BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C
[Candidatus Liberibacter asiaticus str. psy62]
         (616 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|15964924|ref|NP_385277.1| excinuclease ABC subunit C [Sinorhizobium meliloti 1021]
 gi|81634822|sp|Q92QX2|UVRC_RHIME RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|15074103|emb|CAC45750.1| Probable excinuclease ABC subunit C [Sinorhizobium meliloti 1021]
          Length = 674

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 321/614 (52%), Positives = 422/614 (68%), Gaps = 5/614 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+ML+ AG VLYVGKA +L+KR+ +Y     H++RI  M+ +  ++ F  T
Sbjct: 60  KRLPNGPGVYRMLNEAGDVLYVGKARSLKKRVSNYAQGRGHSNRIARMVRETAHMEFVTT 119

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALLLEAN+IKRL+PRFN+LLRDDKSFPYI++T   + PALYKHR + + +G YFG
Sbjct: 120 RTEIEALLLEANLIKRLRPRFNVLLRDDKSFPYIVVTGDTRAPALYKHRGARSRKGDYFG 179

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F LR+C DSVF  RTRPCLL+QIKRCS PCT E+S   Y E 
Sbjct: 180 PFASAGAVGRTINSLQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTNEVSDADYAEL 239

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  IA  M +A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 240 VSEAKDFLSGKSQAVKATIASAMAEASENLDFERAALYRDRLAALSHVQSHQGINPAGVE 299

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+ +H   ++CIQ  FF  GQN G   +F K D     A++LS FL QFY DKPCP
Sbjct: 300 EADVFATHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSIPPAEVLSAFLAQFYDDKPCP 359

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LL    EE  LL  +  ++ GYKV I VP++GEK+ ++E AL NA  +H +KL+   
Sbjct: 360 RQVLLCAPVEEQELLAQALSEKSGYKVSILVPQRGEKKDLVEHALANAREAHGRKLAETA 419

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+ F   F LP++P+RIEIYDNSHIMG +AVG MVV G  GFVK QYRKFN+   
Sbjct: 420 SQGRLLEGFAATFQLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIKST 479

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVILDGGKGQLSAA 479
           D+   DD  MMR V+ RRFS+L+K E   +   +  ++  FP+WPDV+++DGG+GQ++A 
Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRSAEPGEDAGFPAWPDVILIDGGQGQMTAV 539

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + +LK+L +E+ +T I +AKG  R AG E+FF +  E+  L  RDP+LYFIQRLRDEAHR
Sbjct: 540 RTILKELGIEDCVTAIGVAKGVDRDAGRERFFAEGRESFTLPPRDPVLYFIQRLRDEAHR 599

Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI +HR RRKK    +PLDEI GIGP RKR LL  FGT K +SR+    L S+ GIS+ 
Sbjct: 600 FAIGSHRARRKKEMVKNPLDEIAGIGPTRKRALLTHFGTAKAVSRAGINDLMSVNGISET 659

Query: 599 IACKIYNHFHKNTS 612
           +A  +Y HFH++ +
Sbjct: 660 VARIVYEHFHEDAA 673


>gi|307300995|ref|ZP_07580764.1| excinuclease ABC, C subunit [Sinorhizobium meliloti BL225C]
 gi|306903950|gb|EFN34536.1| excinuclease ABC, C subunit [Sinorhizobium meliloti BL225C]
          Length = 674

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 321/614 (52%), Positives = 423/614 (68%), Gaps = 5/614 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+ML+ AG VLYVGKA +L+KR+ +Y     H++RI  M+ +  ++ F  T
Sbjct: 60  KRLPNGPGVYRMLNEAGDVLYVGKARSLKKRVSNYAQGRGHSNRIARMVRETAHMEFVTT 119

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALLLEAN+IKRL+PRFN+LLRDDKSFPYI++T   + PALYKHR + + +G YFG
Sbjct: 120 RTEIEALLLEANLIKRLRPRFNVLLRDDKSFPYIVVTGDTRAPALYKHRGARSRKGDYFG 179

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F LR+C DSVF  RTRPCLL+QIKRCS PCT E+S   Y E 
Sbjct: 180 PFASAGAVGRTINSLQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTNEVSDADYAEL 239

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  IA  M +A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 240 VSEAKDFLSGKSQAVKATIASAMAEASENLDFERAALYRDRLAALSHVQSHQGINPAGVE 299

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D     A++LS FL QFY DKPCP
Sbjct: 300 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSIPPAEVLSAFLAQFYDDKPCP 359

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LL    EE  LL  +  ++ GYKV I VP++GEK+ ++E AL NA  +H +KL+   
Sbjct: 360 RQVLLCAPVEEQELLAQALSEKSGYKVSILVPQRGEKKDLVEHALANAREAHGRKLAETA 419

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+ F   F LP++P+RIEIYDNSHIMG +AVG MVV G  GFVK QYRKFN+   
Sbjct: 420 SQGRLLEGFAATFQLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIKST 479

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVILDGGKGQLSAA 479
           D+   DD  MMR V+ RRFS+L+K E   +   +  ++  FP+WPDV+++DGG+GQ++A 
Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRSAEPGEDAGFPAWPDVILIDGGQGQMTAV 539

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + +LK+L +E+ +T I +AKG  R AG E+FF +  E+  L  RDP+LYFIQRLRDEAHR
Sbjct: 540 RTILKELGIEDCVTAIGVAKGVDRDAGRERFFAEGRESFTLPPRDPVLYFIQRLRDEAHR 599

Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI +HR RRKK    +PLDEI GIGP RKR LL  FGT K +SR+    L S+ GIS+ 
Sbjct: 600 FAIGSHRARRKKEMVKNPLDEIAGIGPTRKRALLTHFGTAKAVSRAGINDLMSVNGISET 659

Query: 599 IACKIYNHFHKNTS 612
           +A  +Y HFH++ +
Sbjct: 660 VARIVYEHFHEDAA 673


>gi|116251353|ref|YP_767191.1| excinuclease ABC subunit C [Rhizobium leguminosarum bv. viciae
           3841]
 gi|119367822|sp|Q1MIX8|UVRC_RHIL3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|115256001|emb|CAK07082.1| putative uvrABC system protein C [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 680

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 320/618 (51%), Positives = 425/618 (68%), Gaps = 9/618 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA +L+KR+ +Y     H++RI  M+ Q  N+ F  T
Sbjct: 62  KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVNNYAVGRVHSNRIAQMVRQTANMEFVTT 121

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  H+ PA++KHR +   +G YFG
Sbjct: 122 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 181

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F +R+C DSVF  RTRPCLL+QIKRCSGPCT E+S   Y E 
Sbjct: 182 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDGGYGEL 241

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  +A  MNQA    D+E A I+RDRLAALSH+Q+H         
Sbjct: 242 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVE 301

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D + ++A++L+ FL QFY DKP P
Sbjct: 302 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPQLSSAEVLNSFLAQFYDDKPVP 361

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + I+LS+  EE  LL  +  ++ G+KV + VP++GEKR +++  + NA  +H +KL+   
Sbjct: 362 KQIMLSQTVEELELLAAALSEKAGHKVSMLVPQRGEKRDLVDHVVGNAREAHGRKLAETA 421

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 422 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 481

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-----FHPKKQEYSFPSWPDVVILDGGKGQ 475
           D+   DD  MM+ V+ RRFS+LIK E   +       P   +  FP+WPDV+++DGG+GQ
Sbjct: 482 DITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQVATPDAADMPFPTWPDVILIDGGQGQ 541

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++A + +L +L + + +T I IAKG  R AG E+FF    E+  L  RDP+LYFIQR+RD
Sbjct: 542 MTAVRAILAELGITDSVTAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFIQRMRD 601

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI +HR RRKK    +PLDEI GIGP RKR LLQ FGT K +SR++   L ++EG
Sbjct: 602 EAHRFAIGSHRARRKKEMIKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 661

Query: 595 ISKKIACKIYNHFHKNTS 612
           IS+ +A ++YNHFH + +
Sbjct: 662 ISEAVARQVYNHFHDDAA 679


>gi|307317729|ref|ZP_07597167.1| excinuclease ABC, C subunit [Sinorhizobium meliloti AK83]
 gi|306896491|gb|EFN27239.1| excinuclease ABC, C subunit [Sinorhizobium meliloti AK83]
          Length = 674

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 322/614 (52%), Positives = 422/614 (68%), Gaps = 5/614 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+ML+ AG VLYVGKA +L+KR+ +Y     H++RI  M+ +  ++ F  T
Sbjct: 60  KRLPNGPGVYRMLNEAGDVLYVGKARSLKKRVSNYAQGRGHSNRIARMVRETAHMEFVTT 119

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALLLEAN+IKRL+PRFN+LLRDDKSFPYI++T   + PALYKHR + + +G YFG
Sbjct: 120 RTEIEALLLEANLIKRLRPRFNVLLRDDKSFPYIVVTGDTRAPALYKHRGARSRKGDYFG 179

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F LR+C DSVF  RTRPCLL+QIKRCS PCT E+S   Y E 
Sbjct: 180 PFASAGAVGRTINSLQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTNEVSDADYAEL 239

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  IA  M +A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 240 VSEAKDFLSGKSQAVKATIASAMAEASENLDFERAALYRDRLAALSHVQSHQGINPAGVE 299

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D     A++LS FL QFY DKPCP
Sbjct: 300 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSIPPAEVLSAFLAQFYDDKPCP 359

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LL    EE  LL  +  ++ GYKV I VP++GEK+ ++E AL NA  +H +KL+   
Sbjct: 360 RQVLLCAPVEEQELLAQALSEKSGYKVSILVPQRGEKKDLVEHALANAREAHGRKLAETA 419

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+ F   F LP++P+RIEIYDNSHIMG +AVG MVV G  GFVK QYRKFN+   
Sbjct: 420 SQGRLLEGFAATFQLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIKST 479

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVILDGGKGQLSAA 479
           D+   DD  MMR V+ RRFS+L+K E   +   +  ++  FP+WPDV+++DGG+GQ++A 
Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRSAEPGEDAGFPAWPDVILIDGGQGQMTAV 539

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + +LK L VE+ +T I +AKG  R AG E+FF +  E+  L  RDP+LYFIQRLRDEAHR
Sbjct: 540 RTILKDLGVEDCVTAIGVAKGVDRDAGRERFFAEGRESFTLPPRDPVLYFIQRLRDEAHR 599

Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI +HR RRKK    +PLDEI GIGP RKR LL  FGT K +SR+    L S+ GIS+ 
Sbjct: 600 FAIGSHRARRKKEMVKNPLDEIAGIGPTRKRALLTHFGTAKAVSRAGINDLMSVNGISET 659

Query: 599 IACKIYNHFHKNTS 612
           +A  +Y HFH++ +
Sbjct: 660 VARIVYEHFHEDAA 673


>gi|209548689|ref|YP_002280606.1| excinuclease ABC subunit C [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534445|gb|ACI54380.1| excinuclease ABC, C subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 680

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 320/618 (51%), Positives = 423/618 (68%), Gaps = 9/618 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA +L+KR+ +Y     H++RI  M+ Q  N+ F  T
Sbjct: 62  KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 121

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  H+ PA++KHR +   +G YFG
Sbjct: 122 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 181

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F +R+C DSVF  RTRPCLL+QIKRCSGPCT E+S   Y E 
Sbjct: 182 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDAGYGEL 241

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  +A  MNQA    D+E A I+RDRLAALSH+Q+H         
Sbjct: 242 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVE 301

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D + + A++L+ FL QFY DKP P
Sbjct: 302 EADVFAIHHEGGVSCIQVFFFRTGQNWGNRAYFPKADPQLSGAEVLNAFLAQFYDDKPVP 361

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + I+LSE  EE  LL  +  ++ G+KV I VP++GEKR +++  + NA  +H +KL+   
Sbjct: 362 KQIMLSETIEEMELLAAALSEKAGHKVAILVPRRGEKRDLVDHVVGNAREAHGRKLAETA 421

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 422 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 481

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS-----FPSWPDVVILDGGKGQ 475
           D+   DD  MM+ V+ RRFS+LIK E   +   +          FP+WPDV+++DGG+GQ
Sbjct: 482 DITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQATAADAADMPFPTWPDVILIDGGQGQ 541

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++A + +L +L + + +T I IAKG  R AG E+FF    E+  L  RDP+LYF+QR+RD
Sbjct: 542 MTAVRAILTELGITDSVTAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFVQRMRD 601

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI +HR RRKK    +PLDEI GIGP RKR LLQ FGT K +SR++   L ++EG
Sbjct: 602 EAHRFAIGSHRARRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 661

Query: 595 ISKKIACKIYNHFHKNTS 612
           IS+ +A ++YNHFH + +
Sbjct: 662 ISEAVAKQVYNHFHDDAA 679


>gi|241203968|ref|YP_002975064.1| excinuclease ABC subunit C [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857858|gb|ACS55525.1| excinuclease ABC, C subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 680

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 320/618 (51%), Positives = 425/618 (68%), Gaps = 9/618 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA +L+KR+ +Y     H++RI  M+ Q  N+ F  T
Sbjct: 62  KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVNNYAVGRVHSNRIAQMVRQTANMEFVTT 121

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  H+ PA++KHR +   +G YFG
Sbjct: 122 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 181

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F +R+C DSVF  RTRPCLL+QIKRCSGPCT E+S   Y E 
Sbjct: 182 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDGGYGEL 241

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  +A  MNQA    D+E A I+RDRLAALSH+Q+H         
Sbjct: 242 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVE 301

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D + ++A++L+ FL QFY DKP P
Sbjct: 302 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPQLSSAEVLNSFLAQFYDDKPVP 361

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + I+LS+  EE  LL  +  ++ G+KV I VP++GEKR +++  + NA  +H +KL+   
Sbjct: 362 KQIMLSQTVEELELLAAALSEKAGHKVSILVPQRGEKRDLVDHVVGNAREAHGRKLAETA 421

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 422 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 481

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-----FHPKKQEYSFPSWPDVVILDGGKGQ 475
           D+   DD  MM+ V+ RRFS+LIK +   +       P   +  FP+WPDV+++DGG+GQ
Sbjct: 482 DITPGDDFGMMKEVMSRRFSRLIKEDGIPDRTAQVATPDAADMPFPTWPDVILIDGGQGQ 541

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++A + +L +L + + +T I IAKG  R AG E+FF    E+  L  RDP+LYFIQR+RD
Sbjct: 542 MTAVRAILAELGITDSVTAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFIQRMRD 601

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI +HR RRKK    +PLDEI GIGP RKR LLQ FGT K +SR++   L ++EG
Sbjct: 602 EAHRFAIGSHRARRKKEMIKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 661

Query: 595 ISKKIACKIYNHFHKNTS 612
           IS+ +A ++YNHFH + +
Sbjct: 662 ISEAVAKQVYNHFHDDAA 679


>gi|327193359|gb|EGE60262.1| excinuclease ABC protein, C subunit [Rhizobium etli CNPAF512]
          Length = 679

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 321/618 (51%), Positives = 424/618 (68%), Gaps = 9/618 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA +L+KR+ +Y     H++RI  M+ Q  N+ F  T
Sbjct: 61  KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 120

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  H+ PA++KHR +   +G YFG
Sbjct: 121 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 180

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F +R+C DSVF  RTRPCLL+QIKRCSGPCT E+S E Y E 
Sbjct: 181 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 240

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  +A  MNQA    D+E A I+RDRLAALSH+Q+H         
Sbjct: 241 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVE 300

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D + + A++L+ FL QFY DKP P
Sbjct: 301 EADVFAIHHEGGVSCIQVFFFRTGQNWGNRAYFPKADPQLSGAEVLNAFLAQFYDDKPVP 360

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + I+LSE  +E  LL  +  ++ G+KV I VP++GEKR +++  + NA  +H +KL+   
Sbjct: 361 KQIMLSETVDELELLAAALSEKAGHKVSILVPQRGEKRDLVDHVVGNAREAHGRKLAETA 420

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 421 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 480

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-----FHPKKQEYSFPSWPDVVILDGGKGQ 475
           D+   DD  MM+ V+ RRFS+LIK E   +           +  FP+WPDV+++DGG+GQ
Sbjct: 481 DITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQAGPADAADMPFPAWPDVILIDGGQGQ 540

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++A + +L +L + + +T I IAKG  R AG E+FF    E+  L  RDP+LYFIQR+RD
Sbjct: 541 MTAVRAILAELGITDSVTAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFIQRMRD 600

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI +HR RRKK    +PLDEI GIGP RKR LLQ FGT K +SR++   L ++EG
Sbjct: 601 EAHRFAIGSHRARRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 660

Query: 595 ISKKIACKIYNHFHKNTS 612
           IS+ +A ++YNHFH + +
Sbjct: 661 ISEAVARQVYNHFHDDAA 678


>gi|150396006|ref|YP_001326473.1| excinuclease ABC subunit C [Sinorhizobium medicae WSM419]
 gi|150027521|gb|ABR59638.1| excinuclease ABC, C subunit [Sinorhizobium medicae WSM419]
          Length = 674

 Score =  601 bits (1550), Expect = e-170,   Method: Composition-based stats.
 Identities = 324/614 (52%), Positives = 422/614 (68%), Gaps = 5/614 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+ML+ AG VLYVGKA +L+KR+ SY     H++RI  M+ +  N+ F  T
Sbjct: 60  KVLPNGPGVYRMLNEAGDVLYVGKARSLKKRVSSYAQGRGHSNRIARMVRETANMEFVTT 119

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALLLEAN+IKRL+PRFN+LLRDDKSFPYI++T   + PALYKHR + + +G YFG
Sbjct: 120 RTEIEALLLEANLIKRLRPRFNVLLRDDKSFPYIVLTGDTRAPALYKHRGARSRKGDYFG 179

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F LR+C DSVF  RTRPCLL QIKRCS PCT EIS + Y E 
Sbjct: 180 PFASAGAVGRTINSLQRAFLLRTCTDSVFETRTRPCLLHQIKRCSAPCTNEISDDDYAEL 239

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  IA  M++A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 240 VSEAKDFLSGKSQAVKATIATAMSEASENLDFERAALYRDRLAALSHVQSHQGINPAGVE 299

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D   T A++LS FL QFY DKPCP
Sbjct: 300 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLTPAEVLSAFLAQFYDDKPCP 359

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ILL    +E  LL  +  ++ GYKV I VP++GEK+ ++E AL NA  +H +KL+   
Sbjct: 360 RQILLCATVDEQDLLAQALSEKSGYKVSILVPQRGEKKDLVEHALGNAREAHGRKLAETA 419

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S + +L+ F   F LP++P+RIEIYDNSHIMG +AVG MVV G  GFVK QYRKFN+   
Sbjct: 420 SQERLLEGFAATFQLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIRST 479

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVILDGGKGQLSAA 479
           D+   DD  MMR V+ RRFS+L+K E   +   +  ++  FP+WPDV+++DGG+GQ++A 
Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRAAEPGEDAGFPAWPDVILIDGGQGQMTAV 539

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + +L +L +E+ +T I +AKG  R AG E+FF    E   L  RDP+LYFIQRLRDEAHR
Sbjct: 540 RTILGELGIEDCVTAIGVAKGVDRDAGRERFFASGREGFTLPPRDPVLYFIQRLRDEAHR 599

Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI +HR RRKK    +PLDEI GIGP RKR LL  FGT K +SR+    L S+ GIS+ 
Sbjct: 600 FAIGSHRARRKKEMVRNPLDEIAGIGPTRKRALLTHFGTAKAVSRAGINDLMSVSGISET 659

Query: 599 IACKIYNHFHKNTS 612
           +A  +Y HFH++ +
Sbjct: 660 VARIVYEHFHEDAA 673


>gi|222148164|ref|YP_002549121.1| excinuclease ABC subunit C [Agrobacterium vitis S4]
 gi|221735152|gb|ACM36115.1| excinuclease ABC C subunit [Agrobacterium vitis S4]
          Length = 690

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 328/622 (52%), Positives = 434/622 (69%), Gaps = 11/622 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M++  G VLYVGKA +L+KR+ +Y     H++R+T M+ +  ++ F  T
Sbjct: 63  KKLPNNPGVYRMMNGDGDVLYVGKARSLKKRVSNYAQGRLHSNRLTRMVRETAHMEFVTT 122

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEALLLEAN+IKRL+PR+N+LLRDDKSFPYILIT   + PA+YKHR +   +G YFG
Sbjct: 123 RTEVEALLLEANLIKRLRPRYNVLLRDDKSFPYILITGDGRAPAIYKHRGARARKGDYFG 182

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F LR+C DSVF  RTRPCLL+QIKRCSGPCT EIS   Y   
Sbjct: 183 PFASAGAVGRTINSLQRAFLLRTCTDSVFESRTRPCLLYQIKRCSGPCTHEISDADYGVL 242

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + N+KE +AR MN+A    D+E A + RDRLA LSH+Q+H         
Sbjct: 243 VKEAKDFLSGKSQNVKEAMARTMNEAAETLDFERAAVFRDRLAGLSHVQSHQGINPAGVE 302

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   L CIQ  FF  GQN G   +F K D + T A++LS FL QFY DKPCP
Sbjct: 303 EADIFAIHHEGGLTCIQVFFFRTGQNWGNRAYFPKADPQMTGAEVLSAFLAQFYDDKPCP 362

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LLSE  +E  LL ++  ++ GYKV I VP++GEK+ ++E    NA  +H +KL+   
Sbjct: 363 RQVLLSEGIDEQDLLSLALSEKAGYKVTILVPQRGEKKDLVEHVHGNAREAHGRKLAETA 422

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S + +LK F + FAL ++P+RIEIYDNSHIMG +AVG MVV G  GFV+NQYRKFN+   
Sbjct: 423 SQERLLKGFAETFALAYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVRNQYRKFNIKST 482

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS-------FPSWPDVVILDGGK 473
           D+   DD  MMR V+ RRFS+L+K E   + +P +   +       FP+WPDV+++DGG+
Sbjct: 483 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRNPNRSTGTEEGADAVFPAWPDVILIDGGQ 542

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQ++A + +LK+L++ + +T I +AKG  R AG E+FF +      L  RDP+LYFIQRL
Sbjct: 543 GQMTAVRAILKELDITDCVTAIGVAKGVDRDAGRERFFAQGKPDFTLPPRDPVLYFIQRL 602

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAI +HR RRKK    +PLDEI GIGP RKR LLQ FGT K +SR++   L ++
Sbjct: 603 RDEAHRFAIGSHRARRKKEMVKNPLDEIGGIGPTRKRALLQHFGTAKAVSRAAMNDLMAV 662

Query: 593 EGISKKIACKIYNHFHKNTSHT 614
           +GIS+ +A +IYNHFH+N+ H+
Sbjct: 663 DGISEAVARQIYNHFHENSGHS 684


>gi|110634325|ref|YP_674533.1| excinuclease ABC subunit C [Mesorhizobium sp. BNC1]
 gi|119367666|sp|Q11GV7|UVRC_MESSB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|110285309|gb|ABG63368.1| Excinuclease ABC subunit C [Chelativorans sp. BNC1]
          Length = 653

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 310/613 (50%), Positives = 411/613 (67%), Gaps = 6/613 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M++  G VLYVGKA +L+KR+ +Y     H++RI  MI +   + F VT
Sbjct: 40  KRLPNAPGVYRMVNTEGDVLYVGKARSLKKRVTNYAQGRGHSNRIERMIRETATMEFVVT 99

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H  P ++KHR + + +G YFG
Sbjct: 100 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGNHPAPGIFKHRGARSRRGDYFG 159

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F LR+C DSVF  RTRPCLL+QIKRCSGPCT EIS E Y   
Sbjct: 160 PFASAGAVGRTINSLQRAFLLRTCTDSVFESRTRPCLLYQIKRCSGPCTREISVEDYATL 219

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K +IA  M +A+   D+E A I+RDRLAALSH+Q+H         
Sbjct: 220 VKEAKDFLSGRSSTVKAEIATAMQEASQALDFERAAIYRDRLAALSHVQSHQGINPQGLE 279

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++      CIQ  FF  GQN G   +F K D    + ++L  FL QFY DKPCP
Sbjct: 280 EADVFAIHQEGGQTCIQVFFFRTGQNWGNRAYFPKADPALGHGEVLGSFLAQFYDDKPCP 339

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ILLS   E+  LL  +   + G KV+++VP +GEK+ + + AL NA  +  ++L+   
Sbjct: 340 RLILLSHPVEDQDLLAEALSARAGRKVQVSVPARGEKKDLTDHALQNAREALGRRLAETS 399

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F L   P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 400 SQARLLEGLAETFGLEAAPRRIEVYDNSHIMGTNAVGAMIVAGPEGFVKNQYRKFNIRSA 459

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEE--NLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
           ++   DD  MMR V++RRF++LIK +         +  + SFP+WPD++++DGG+GQ+SA
Sbjct: 460 EITPGDDFGMMREVMQRRFARLIKEQGLPGNGSEAEDSDASFPAWPDLILIDGGQGQMSA 519

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            + +L  L + + +T I +AKG  R AG E+FF++      L  RDP+LYF+QRLRDEAH
Sbjct: 520 VRQILDDLGIADLVTAIGVAKGVDRDAGRERFFMEGRPPFTLPPRDPVLYFVQRLRDEAH 579

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI +HR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  + GIS+
Sbjct: 580 RFAIGSHRARRKKEMVKNPLDEIAGIGPGRKRALLHHFGTAKAVSRAAVEDLMEVGGISE 639

Query: 598 KIACKIYNHFHKN 610
            IA  IYNHFH++
Sbjct: 640 SIARLIYNHFHES 652


>gi|227821493|ref|YP_002825463.1| excinuclease ABC subunit C [Sinorhizobium fredii NGR234]
 gi|227340492|gb|ACP24710.1| UvrABC system protein C [Sinorhizobium fredii NGR234]
          Length = 673

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 326/613 (53%), Positives = 425/613 (69%), Gaps = 5/613 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+M + AG VLYVGKA +L+KR+ +Y     H++RI  M+ +  N+ F  T
Sbjct: 60  KLLPNGPGVYRMFNEAGDVLYVGKARSLKKRVNNYAQGRGHSNRIARMVRETANMEFVTT 119

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALLLEAN+IKRL+PRFN+LLRDDKSFPYI++T   + PALYKHR + + +G YFG
Sbjct: 120 RTEIEALLLEANLIKRLRPRFNVLLRDDKSFPYIVVTGDSRAPALYKHRGARSRKGDYFG 179

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F LR+C DSVF  RTRPCLL+QIKRCS PCTGEIS   Y E 
Sbjct: 180 PFASAGAVGRTINSLQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTGEISDPDYAEL 239

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           VHEAK FLSG +  +K  IA  M++A+   D+E A ++RDRLAALSH+Q++         
Sbjct: 240 VHEAKDFLSGKSQAVKATIAAAMSEASENLDFERAALYRDRLAALSHVQSYQGINPAGVE 299

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D     A++LS FL QFY DKPCP
Sbjct: 300 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLPAAEVLSAFLAQFYDDKPCP 359

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ILL E  +E  LL  +  ++ GYKV I VP++GEK+ ++E A  NA  +H +KL+   
Sbjct: 360 RQILLCEAVDEQELLGQALSEKSGYKVSILVPQRGEKKDLVEHAQANAREAHGRKLAETA 419

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+ F + F LP +P+RIEIYDNSHIMG +AVG MVV G  GFVK QYRKFN+   
Sbjct: 420 SQSRLLEGFAETFKLPSVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIKST 479

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDGGKGQLSAA 479
           D+   DD  MMR V+ RRFS+L+K E   +   +  E  +FP+WPDV+++DGG+GQ++A 
Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRSSEASEDTAFPAWPDVILIDGGQGQMTAV 539

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + +LK+L+VE+ +T I IAKG  R AG E+FFV+  E+  L  RDP+LYFIQRLRDEAHR
Sbjct: 540 RAILKELDVEDCVTAIGIAKGVDRDAGRERFFVEGKESFTLPPRDPVLYFIQRLRDEAHR 599

Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI +HR RRKK    +PLDEI GIGP RKR LL  FGT K +SR+    L ++ GIS+ 
Sbjct: 600 FAIGSHRARRKKEMVKNPLDEIAGIGPTRKRALLTHFGTAKAVSRAGINDLMAVNGISET 659

Query: 599 IACKIYNHFHKNT 611
           +A  +Y HFH++ 
Sbjct: 660 VARLVYAHFHEDA 672


>gi|190891161|ref|YP_001977703.1| excinuclease ABC protein, C subunit [Rhizobium etli CIAT 652]
 gi|190696440|gb|ACE90525.1| excinuclease ABC protein, C subunit [Rhizobium etli CIAT 652]
          Length = 679

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 322/618 (52%), Positives = 423/618 (68%), Gaps = 9/618 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA +L+KR+ +Y     H++RI  M+ Q  N+ F  T
Sbjct: 61  KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 120

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  H+ PA++KHR +   +G YFG
Sbjct: 121 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 180

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F +R+C DSVF  RTRPCLL+QIKRCSGPCT E+S E Y E 
Sbjct: 181 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYGEL 240

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  +A  MNQA    D+E A I+RDRLAALSH+Q+H         
Sbjct: 241 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVE 300

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D + + A++L+ FL QFY DKP P
Sbjct: 301 EADVFAIHHEGGVSCIQVFFFRTGQNWGNRAYFPKADPQLSGAEVLNAFLAQFYDDKPVP 360

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + I+LSE  EE  LL  +  ++ G+KV I VP++GEKR +++  + NA   H +KL+   
Sbjct: 361 KQIMLSETVEELELLAAALSEKAGHKVSILVPQRGEKRDLVDHVVGNAREGHGRKLAETA 420

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 421 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 480

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS-----FPSWPDVVILDGGKGQ 475
           D+   DD  MM+ V+ RRFS+LIK E   +   +          FP+WPDV+++DGG+GQ
Sbjct: 481 DITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQATAADAADMPFPAWPDVILIDGGQGQ 540

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++A + +L +L + + +T I IAKG  R AG E+FF    E+  L  RDP+LYFIQR+RD
Sbjct: 541 MTAVRAILAELGLTDSVTAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFIQRMRD 600

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI +HR RRKK    +PLDEI GIGP RKR LLQ FGT K +SR++   L ++EG
Sbjct: 601 EAHRFAIGSHRARRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 660

Query: 595 ISKKIACKIYNHFHKNTS 612
           IS+ +A ++YNHFH + +
Sbjct: 661 ISEAVARQVYNHFHDDAA 678


>gi|256060824|ref|ZP_05450984.1| excinuclease ABC subunit C [Brucella neotomae 5K33]
 gi|261324816|ref|ZP_05964013.1| UvrABC system protein C [Brucella neotomae 5K33]
 gi|261300796|gb|EEY04293.1| UvrABC system protein C [Brucella neotomae 5K33]
          Length = 690

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYVDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+ +VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQASVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T+I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTVIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|239831533|ref|ZP_04679862.1| excinuclease ABC, C subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823800|gb|EEQ95368.1| excinuclease ABC, C subunit [Ochrobactrum intermedium LMG 3301]
          Length = 702

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 315/610 (51%), Positives = 416/610 (68%), Gaps = 5/610 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 91  KRLPNNPGVYRMFNGDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 150

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 151 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHRAPGIFKHRGARSRKGDYFG 210

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLLFQIKRCSGPCT EIS E Y E 
Sbjct: 211 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLFQIKRCSGPCTREISDEDYAEL 270

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V+EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 271 VNEAKAFLSGKSQSVKDHLATAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 330

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKP P
Sbjct: 331 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPSP 390

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LLSE  EE SL+  +   + G+KV++ VP++GEK+ +++ AL NA  +  ++L+   
Sbjct: 391 RLVLLSETVEEQSLIAEALSTRAGHKVQVNVPQRGEKKDLVDHALTNAREALGRRLAETS 450

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F L   P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 451 SQARLLQGMAETFGLSQPPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 510

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-EYSFPSWPDVVILDGGKGQLSAA 479
           D+   DD  MMR V+ERRFS+L+K           +   +FP+WPDV+++DGG+GQ+ A 
Sbjct: 511 DITPGDDFGMMREVIERRFSRLVKEHGTPEEPADTEVTDTFPAWPDVILIDGGQGQVGAV 570

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + +L +L + + +  I IAKG  R AG E+FFV+  +A  L  RDP+LYFIQRLRDEAHR
Sbjct: 571 RQILGELGISHLVNAIGIAKGVDREAGRERFFVEGKQAFTLPPRDPVLYFIQRLRDEAHR 630

Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ 
Sbjct: 631 FAIGTHRARRKKEMVKNPLDEIAGIGPSRKRALLHHFGTAKAVSRAAVEDLMQIDGISEA 690

Query: 599 IACKIYNHFH 608
           +A  I++HF 
Sbjct: 691 MARTIHDHFR 700


>gi|306842035|ref|ZP_07474708.1| excinuclease ABC, C subunit [Brucella sp. BO2]
 gi|306287876|gb|EFM59296.1| excinuclease ABC, C subunit [Brucella sp. BO2]
          Length = 690

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 313/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV++TVP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVTVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|307944216|ref|ZP_07659557.1| excinuclease ABC subunit C [Roseibium sp. TrichSKD4]
 gi|307772562|gb|EFO31782.1| excinuclease ABC subunit C [Roseibium sp. TrichSKD4]
          Length = 659

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 307/626 (49%), Positives = 409/626 (65%), Gaps = 19/626 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P  PGVY+M D  G VLYVGKA NL+KR+ SY      ++RI  MI    ++ F 
Sbjct: 34  QVKRLPNSPGVYRMFDENGEVLYVGKARNLKKRVTSYTRLQGQSNRIMRMILSTASMEFV 93

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILI+  H+  A+ KHR +   +G Y
Sbjct: 94  VTQTEPEALLLEANLIKRLRPRFNVLLRDDKSFPYILISGDHEAAAIVKHRGARKRKGDY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFAS  AV++TIN+LQ+ F +R+C+DS + +R+RPCL +QIKRC+GPCTG+IS+E Y 
Sbjct: 154 FGPFASAGAVDRTINALQKAFLIRNCSDSYYENRSRPCLQYQIKRCAGPCTGQISTEGYE 213

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V EAK FLSG +  +KE +AR M QA+   D+E A I RDRLAALSH+Q H       
Sbjct: 214 ALVAEAKAFLSGRSQAVKEDLARQMEQASETLDFERAAICRDRLAALSHVQAHQGINPQT 273

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            +  D F++Y     +C+Q  FF  GQN G   +F K D       IL  FL QFY DKP
Sbjct: 274 VDEADVFAIYQEGGQSCVQVFFFRTGQNWGNRAYFPKADKSMDTESILESFLAQFYDDKP 333

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ ILLS   EE +LL  +  ++ G KV I VPK+GEK+++++ A  NA  +  ++L+ 
Sbjct: 334 APKQILLSHSVEELTLLAEALSERMGRKVDIAVPKRGEKKELVDYASRNAKEALGRRLAE 393

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             S   +LK   + F L   P+RIE+YDNSHIMG +AVG M+V G  G  K  YRKFN+ 
Sbjct: 394 TSSQTKLLKGVAEAFDLETTPRRIEVYDNSHIMGTNAVGGMIVAGPEGLAKAHYRKFNIK 453

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEEN--------------LNFHPKKQEYSFPSWP 464
             D+   DD  MMR VL RRFS+L+K  E                +   +      P+WP
Sbjct: 454 SEDLTPGDDYGMMREVLTRRFSRLLKEHEREAKPDPLPEPDTDQASDAEETPNTDVPAWP 513

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D+V++DGG+GQL+AA+  L++L V + + ++ IAKGP R AG EKFF+    + +L  RD
Sbjct: 514 DLVLIDGGQGQLTAARETLEELGVTD-VPLVGIAKGPDRDAGREKFFITGRPSFMLPERD 572

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           P+LYF+QRLRDEAHRFAI +HR RRKK    +PLDEI GIGP RKR LL+ FGT K +S+
Sbjct: 573 PVLYFVQRLRDEAHRFAIGSHRARRKKDISKNPLDEIAGIGPTRKRALLRHFGTAKAVSK 632

Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609
           +  E L ++ GIS+ +A  +YN+FH+
Sbjct: 633 AGLEDLTAVPGISEAVAKLVYNYFHE 658


>gi|306843659|ref|ZP_07476259.1| excinuclease ABC, C subunit [Brucella sp. BO1]
 gi|306275969|gb|EFM57678.1| excinuclease ABC, C subunit [Brucella sp. BO1]
          Length = 690

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 313/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDENYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV++TVP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVTVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|163759154|ref|ZP_02166240.1| excinuclease ABC subunit C [Hoeflea phototrophica DFL-43]
 gi|162283558|gb|EDQ33843.1| excinuclease ABC subunit C [Hoeflea phototrophica DFL-43]
          Length = 701

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 317/621 (51%), Positives = 421/621 (67%), Gaps = 14/621 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+M++ AG VLYVGKA +L+KR+ +Y     H++RIT MI+Q  N+ F  T
Sbjct: 79  KHLPNQPGVYRMINEAGDVLYVGKARSLKKRVTNYAQGRGHSNRITRMIAQTANMEFVTT 138

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRLKPRFN+L+RDDKSFPYIL+T  H+ PA++KHR + + +GSYFG
Sbjct: 139 RTETEALLLEANLIKRLKPRFNVLMRDDKSFPYILVTADHEAPAIFKHRGARSRKGSYFG 198

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSV+  RTRPCLL+QIKRC+GPCTGEI +E Y   
Sbjct: 199 PFASAGAVGRTINALQRAFLLRTCTDSVYESRTRPCLLYQIKRCAGPCTGEIDAEGYARL 258

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K +++R M  A+   D+E A ++RDRL+ALSH+Q+H         
Sbjct: 259 VSEAKDFLSGRSQTVKAQLSRAMQDASEDLDFERAAVYRDRLSALSHVQSHQGINPQTVE 318

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H+  +ACIQ  FF  GQN G   +F K D      +IL  F+ QFY DKP P
Sbjct: 319 EADVFAIHHDAGMACIQVFFFRTGQNWGNRAYFPKADPSLAPGEILGAFIGQFYDDKPTP 378

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             IL+S + E+  LL  +   +   KV I+ P++GEKR++++Q L NA  +H + L+   
Sbjct: 379 RMILVSNDFEDRPLLAEALSVRMERKVTISEPQRGEKRELVDQVLSNAREAHGRHLAETA 438

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + FALP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 439 SQARLLEGLAETFALPRPPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIKST 498

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEEN----------LNFHPKKQEYSFPSWPDVVILD 470
           D+   DD  MMR V++RRFS+LIK+                     +   P+WPD+V++D
Sbjct: 499 DITPGDDFGMMREVMQRRFSRLIKDHGEEGPNQPDSADDADTDAAAQAGMPAWPDLVLID 558

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ+SA + +L++L +  +IT I +AKG  R AG E+FFV+      L  RDP+LYF+
Sbjct: 559 GGKGQMSAVRKILEELGIAGKITAIGVAKGMDREAGRERFFVEGKPDFTLPPRDPVLYFV 618

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QRLRDEAHRFAI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR+  + L
Sbjct: 619 QRLRDEAHRFAIGTHRARRKKEMIKNPLDEIGGIGPSRKRALLHHFGTAKAVSRAGVDDL 678

Query: 590 ASIEGISKKIACKIYNHFHKN 610
             +EGIS+ +A  IYNHFH++
Sbjct: 679 IKVEGISEAVAELIYNHFHED 699


>gi|254713824|ref|ZP_05175635.1| excinuclease ABC subunit C [Brucella ceti M644/93/1]
 gi|254717118|ref|ZP_05178929.1| excinuclease ABC subunit C [Brucella ceti M13/05/1]
 gi|261218933|ref|ZP_05933214.1| excinuclease ABC subunit C [Brucella ceti M13/05/1]
 gi|261321568|ref|ZP_05960765.1| UvrABC system protein C [Brucella ceti M644/93/1]
 gi|260924022|gb|EEX90590.1| excinuclease ABC subunit C [Brucella ceti M13/05/1]
 gi|261294258|gb|EEX97754.1| UvrABC system protein C [Brucella ceti M644/93/1]
          Length = 690

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGSEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|254701482|ref|ZP_05163310.1| excinuclease ABC subunit C [Brucella suis bv. 5 str. 513]
 gi|261752025|ref|ZP_05995734.1| UvrABC system protein C [Brucella suis bv. 5 str. 513]
 gi|261741778|gb|EEY29704.1| UvrABC system protein C [Brucella suis bv. 5 str. 513]
          Length = 690

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|153009916|ref|YP_001371131.1| excinuclease ABC subunit C [Ochrobactrum anthropi ATCC 49188]
 gi|151561804|gb|ABS15302.1| excinuclease ABC, C subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 691

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 316/610 (51%), Positives = 416/610 (68%), Gaps = 5/610 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 80  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 139

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 140 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHRAPGIFKHRGARSRKGDYFG 199

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLLFQIKRCSGPCT EIS E Y E 
Sbjct: 200 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLFQIKRCSGPCTHEISDEDYAEL 259

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V+EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 260 VNEAKAFLSGKSQSVKDHLATAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 319

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 320 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 379

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LLSE  EE SL+  +   + G+KV++ VP++GEK+ +++ AL NA  +  ++L+   
Sbjct: 380 RLVLLSETVEEQSLIAEALSTRAGHKVQVNVPQRGEKKDLVDHALTNAREALGRRLAETS 439

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F L   P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 440 SQARLLQGMAETFGLSQPPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 499

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-EYSFPSWPDVVILDGGKGQLSAA 479
           D+   DD  MMR V+ERRFS+L+K           +   +FP+WPDV+++DGG+GQ+ A 
Sbjct: 500 DITPGDDFGMMREVIERRFSRLVKEHGTPEEPADAEVTDTFPAWPDVILIDGGQGQVGAV 559

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + +L +L + + +  I IAKG  R AG E+FFV+  +A  L  RDP+LYFIQRLRDEAHR
Sbjct: 560 RQILGELGISHLVNAIGIAKGVDREAGRERFFVEGKQAFTLPPRDPVLYFIQRLRDEAHR 619

Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++   L  IEGIS+ 
Sbjct: 620 FAIGTHRARRKKEMVKNPLDEIAGIGPSRKRALLHHFGTAKAVSRAAVADLMQIEGISEA 679

Query: 599 IACKIYNHFH 608
           +A  I++HF 
Sbjct: 680 MAKTIHDHFR 689


>gi|254704029|ref|ZP_05165857.1| excinuclease ABC subunit C [Brucella suis bv. 3 str. 686]
 gi|261754683|ref|ZP_05998392.1| UvrABC system protein C [Brucella suis bv. 3 str. 686]
 gi|261744436|gb|EEY32362.1| UvrABC system protein C [Brucella suis bv. 3 str. 686]
          Length = 690

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|163842969|ref|YP_001627373.1| excinuclease ABC subunit C [Brucella suis ATCC 23445]
 gi|163673692|gb|ABY37803.1| excinuclease ABC, C subunit [Brucella suis ATCC 23445]
          Length = 690

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|254718836|ref|ZP_05180647.1| excinuclease ABC subunit C [Brucella sp. 83/13]
 gi|265983820|ref|ZP_06096555.1| UvrABC system protein C [Brucella sp. 83/13]
 gi|306838757|ref|ZP_07471591.1| excinuclease ABC, C subunit [Brucella sp. NF 2653]
 gi|264662412|gb|EEZ32673.1| UvrABC system protein C [Brucella sp. 83/13]
 gi|306406159|gb|EFM62404.1| excinuclease ABC, C subunit [Brucella sp. NF 2653]
          Length = 690

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F +T
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVIT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV++TVP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVTVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGIGDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|86357117|ref|YP_469009.1| excinuclease ABC subunit C [Rhizobium etli CFN 42]
 gi|119367821|sp|Q2KA54|UVRC_RHIEC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|86281219|gb|ABC90282.1| excinuclease ABC subunit C protein [Rhizobium etli CFN 42]
          Length = 679

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 324/618 (52%), Positives = 429/618 (69%), Gaps = 9/618 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+ML+  G VLYVGKA +L+KR+ +Y     H++RI  M+ Q  N+ F  T
Sbjct: 61  KRLPNSPGVYRMLNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 120

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  H+ PA++KHR +   +G YFG
Sbjct: 121 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 180

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F +R+C DSVF  RTRPCLL+QIKRCSGPCT E+S E Y E 
Sbjct: 181 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 240

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  +A  MNQA    D+E A I+RDRLAALSH+Q+H        +
Sbjct: 241 VQEAKDFLSGKSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVD 300

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D + ++A++L+ FL QFY DKP P
Sbjct: 301 EADVFAIHHEGGVSCIQVFFFRTGQNWGNRAYFPKADPQLSSAEVLNAFLAQFYDDKPVP 360

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + I+LSE AEE  LL  +  ++ G+KV I VP++GEKR +++  + NA  +H +KL+   
Sbjct: 361 KQIMLSETAEELELLAAALSEKAGHKVSILVPRRGEKRDLVDHVVGNAREAHGRKLAETA 420

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 421 SQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 480

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS-----FPSWPDVVILDGGKGQ 475
           D+   DD  MM+ V+ RRFS+LIK E   +   +          FP+WPDV+++DGG+GQ
Sbjct: 481 DITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQAAAADAADMPFPAWPDVILIDGGQGQ 540

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++A + +L +L + + +T I IAKG  R AG E+FF    E+  L  RDP+LYFIQR+RD
Sbjct: 541 MTAVRAILAELGITDSVTAIGIAKGVDRDAGRERFFAPGRESFTLPPRDPVLYFIQRMRD 600

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI +HR RRKK    +PLDEI GIGP RKR LLQ FGT K +SR++   L ++EG
Sbjct: 601 EAHRFAIGSHRVRRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEG 660

Query: 595 ISKKIACKIYNHFHKNTS 612
           IS+ +A ++YNHFH++ +
Sbjct: 661 ISEAVAKQVYNHFHEDAA 678


>gi|148560017|ref|YP_001258680.1| excinuclease ABC subunit C [Brucella ovis ATCC 25840]
 gi|148371274|gb|ABQ61253.1| excinuclease ABC, C subunit [Brucella ovis ATCC 25840]
          Length = 690

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLVQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|256254719|ref|ZP_05460255.1| excinuclease ABC subunit C [Brucella ceti B1/94]
 gi|261221899|ref|ZP_05936180.1| UvrABC system protein C [Brucella ceti B1/94]
 gi|260920483|gb|EEX87136.1| UvrABC system protein C [Brucella ceti B1/94]
          Length = 690

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 314/609 (51%), Positives = 420/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFASV AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASVGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L K+ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGKMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|260168450|ref|ZP_05755261.1| excinuclease ABC subunit C [Brucella sp. F5/99]
 gi|261757912|ref|ZP_06001621.1| excinuclease ABC subunit C [Brucella sp. F5/99]
 gi|261737896|gb|EEY25892.1| excinuclease ABC subunit C [Brucella sp. F5/99]
          Length = 690

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 313/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L K+ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGKMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|188582246|ref|YP_001925691.1| excinuclease ABC, C subunit [Methylobacterium populi BJ001]
 gi|179345744|gb|ACB81156.1| excinuclease ABC, C subunit [Methylobacterium populi BJ001]
          Length = 700

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 280/632 (44%), Positives = 381/632 (60%), Gaps = 26/632 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D  G VLYVGKA NL+ R+ SY     H++RI  MI+Q   + F  T 
Sbjct: 70  TLPTSPGVYRMFDHKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 129

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T     P + KHR +   +G+Y+GP
Sbjct: 130 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTSDGPAPQIVKHRGARRRKGNYYGP 189

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FA+V AV +T+N+LQR F LR+C+DS + +RTRPCLL+QIKRCSGPCTGEISS+ Y+   
Sbjct: 190 FANVWAVNRTVNALQRAFLLRTCSDSYYENRTRPCLLYQIKRCSGPCTGEISSDDYVALA 249

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
             A+ FLSG ++ +K+++   M  A+   ++E A   RDR+AALS IQ            
Sbjct: 250 DNARAFLSGKSNAVKDRMREEMQAASENLEFERAARFRDRIAALSAIQGTQGVNTQGVEE 309

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F+L       CI+  FF   QN G   +F K D   +  ++L+ F+ QFY DKP P 
Sbjct: 310 ADVFALDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRSMSADEVLASFISQFYDDKPAPR 369

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +L+S   E+  L+  +   +  ++V++  P++GE++ +++ A  NA  +  ++L+   S
Sbjct: 370 LVLVSHTIEDAELMAAALSSRVEHRVEVHQPQRGERKNLVDYAQRNAKEALGRRLADTAS 429

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L   P+RIE+YDNSHI G +AVG M+V G  GF+K  YR FN+   +
Sbjct: 430 QGKLLAALGQSFGLDKPPRRIEVYDNSHISGTAAVGGMIVAGPTGFMKTHYRTFNIKSEE 489

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK---------------------KQEYSF 460
           +   DD  MMR VL RRF +L K                                   +F
Sbjct: 490 LSPGDDFGMMREVLTRRFKRLAKEAPRTPREGDVGEPQAAAEGQAVPAATEALPDDPDAF 549

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
           P+WPD+V++DGG GQL AA+  L ++ V + + ++ IAKG  R AG E FFV       L
Sbjct: 550 PAWPDLVLIDGGAGQLEAARASLAEIGVID-VPLVGIAKGRDRDAGRETFFVPGRTPFKL 608

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579
             RDP LYF+QRLRDEAHRFAI THR RRK+    +PLDEI GIGP RKR LL  FGTVK
Sbjct: 609 PPRDPALYFVQRLRDEAHRFAIGTHRARRKREMTKNPLDEIAGIGPTRKRALLHHFGTVK 668

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I R++ E LA   G++   A  +Y+ FH N 
Sbjct: 669 AIERAALEDLAKAPGVNAATARAVYDFFHANA 700


>gi|163852296|ref|YP_001640339.1| excinuclease ABC, C subunit [Methylobacterium extorquens PA1]
 gi|163663901|gb|ABY31268.1| excinuclease ABC, C subunit [Methylobacterium extorquens PA1]
          Length = 682

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 276/629 (43%), Positives = 382/629 (60%), Gaps = 23/629 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D  G VLYVGKA NL+ R+ SY     H++RI  MI+Q   + F  T 
Sbjct: 55  TLPNSPGVYRMFDAKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 114

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T     P + KHR +   +G+Y+GP
Sbjct: 115 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTSDGPAPQIVKHRGARRRKGNYYGP 174

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FA+V AV +T+N+LQR F +R+C+DS + +RTRPCLL+QIKRCSGPCTGEI+ E Y    
Sbjct: 175 FANVWAVNRTVNALQRAFLMRTCSDSYYENRTRPCLLYQIKRCSGPCTGEIALEDYSALA 234

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
             A+ FLSG ++ +K+++   M +A+   ++E A   RDR+AALS IQ            
Sbjct: 235 DSARAFLSGKSNAVKDRMREEMQRASEALEFERAARFRDRIAALSAIQGVQGVNTQGVEE 294

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F++       CI+  FF   QN G   +F K D   +  ++L+ F+ QFY DKP P+
Sbjct: 295 ADVFAIDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRSMSADEVLASFISQFYDDKPAPK 354

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +L+S   E+  L+  +   +  ++V++  P++GE++ +++ A  NA  +  ++L+   S
Sbjct: 355 LVLVSHTIEDAELVAAALSSRVEHRVEVHQPQRGERKNLVDYAQRNAKEALGRRLADTAS 414

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L   P+R+E+YDNSHI G +AVG M+V G  GF+K  YR FN+   +
Sbjct: 415 QGKLLTALGQAFGLDKPPRRVEVYDNSHISGTAAVGGMIVAGPTGFMKTHYRTFNIKSEE 474

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK------------------KQEYSFPSW 463
           +   DD  MMR VL RRF +L K         +                      +FP+W
Sbjct: 475 LSPGDDFGMMREVLTRRFKRLAKEAPRTPREGEAGEPQTADQAVPAVAEVQDDPDAFPAW 534

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PD+V++DGG GQL AA+  L ++ V   + ++ IAKG  R AG E FFV       L  R
Sbjct: 535 PDLVLIDGGAGQLEAARASLAEIGVTG-VPLVGIAKGRDRDAGRETFFVPGRSPFKLPPR 593

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
           DP+LYF+QRLRDEAHRFAI THR RRK+    +PLDEI GIGP RKR LL  FGTVK I 
Sbjct: 594 DPVLYFVQRLRDEAHRFAIGTHRARRKREMTKNPLDEIAGIGPTRKRALLHHFGTVKAIE 653

Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNT 611
           R++ E LA   G++   A  +Y+ FH N 
Sbjct: 654 RAALEDLAKAPGVNAATARAVYDFFHANA 682


>gi|161618668|ref|YP_001592555.1| excinuclease ABC subunit C [Brucella canis ATCC 23365]
 gi|260566723|ref|ZP_05837193.1| excinuclease ABC subunit C [Brucella suis bv. 4 str. 40]
 gi|161335479|gb|ABX61784.1| excinuclease ABC, C subunit [Brucella canis ATCC 23365]
 gi|260156241|gb|EEW91321.1| excinuclease ABC subunit C [Brucella suis bv. 4 str. 40]
          Length = 690

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 311/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE  L+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQFLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|218531054|ref|YP_002421870.1| excinuclease ABC, C subunit [Methylobacterium chloromethanicum CM4]
 gi|218523357|gb|ACK83942.1| excinuclease ABC, C subunit [Methylobacterium chloromethanicum CM4]
          Length = 682

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 276/629 (43%), Positives = 381/629 (60%), Gaps = 23/629 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D  G VLYVGKA NL+ R+ SY     H++RI  MI+Q   + F  T 
Sbjct: 55  TLPNSPGVYRMFDAKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 114

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T     P + KHR +   +G+Y+GP
Sbjct: 115 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTSDGPAPQIVKHRGARRRKGNYYGP 174

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FA+V AV +T+N+LQR F +R+C+DS + +RTRPCLL+QIKRCSGPCTGEI+ E Y    
Sbjct: 175 FANVWAVNRTVNALQRAFLMRTCSDSYYENRTRPCLLYQIKRCSGPCTGEIALEDYSALA 234

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
             A+ FLSG ++ +K+++   M +A+   ++E A   RDR+AALS IQ            
Sbjct: 235 DSARAFLSGKSNAVKDRMREEMQRASEALEFERAARFRDRIAALSAIQGVQGVNTQGVEE 294

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F++       CI+  FF   QN G   +F K D   +  ++L+ F+ QFY DKP P+
Sbjct: 295 ADVFAIDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRSMSADEVLASFISQFYDDKPAPK 354

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +L+S   E+  L+  +   +  ++V++  P++GE++ +++ A  NA  +  ++L+   S
Sbjct: 355 LVLVSHTIEDAELVAAALSSRVEHRVEVHQPQRGERKNLVDYAQRNAKEALGRRLADTAS 414

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L   P+R+E+YDNSHI G +AVG M+V G  GF+K  YR FN+   +
Sbjct: 415 QGKLLTALGQAFGLDKPPRRVEVYDNSHISGTAAVGGMIVAGPTGFMKTHYRTFNIKSEE 474

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK------------------KQEYSFPSW 463
           +   DD  MMR VL RRF +L K                                +FP+W
Sbjct: 475 LSPGDDFGMMREVLTRRFKRLAKEAPRTPREGDAGEPQAPEKAVPTVAEVQDDPDAFPAW 534

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PD+V++DGG GQL AA+  L ++ V   + ++ IAKG  R AG E FFV       L  R
Sbjct: 535 PDLVLIDGGAGQLEAARASLAEIGVTG-VPLVGIAKGRDRDAGRETFFVPGRSPFKLPPR 593

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
           DP+LYF+QRLRDEAHRFAI THR RRK+    +PLDEI GIGP RKR LL  FGTVK I 
Sbjct: 594 DPVLYFVQRLRDEAHRFAIGTHRARRKREMTKNPLDEIAGIGPTRKRALLHHFGTVKAIE 653

Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNT 611
           R++ E LA   G++   A  +Y+ FH N 
Sbjct: 654 RAALEDLAKAPGVNAATARAVYDFFHANA 682


>gi|254562042|ref|YP_003069137.1| DNA exisiton repair enzyme together with UvrAB [Methylobacterium
           extorquens DM4]
 gi|254269320|emb|CAX25286.1| DNA exisiton repair enzyme together with UvrAB [Methylobacterium
           extorquens DM4]
          Length = 682

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 277/629 (44%), Positives = 383/629 (60%), Gaps = 23/629 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D  G VLYVGKA NL+ R+ SY     H++RI  MI+Q   + F  T 
Sbjct: 55  TLPNSPGVYRMFDAKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 114

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T     P + KHR +   +G+Y+GP
Sbjct: 115 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTSDGPAPQIVKHRGARRRKGNYYGP 174

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FA+V AV +T+N+LQR F +R+C+DS + +RTRPCLL+QIKRCSGPCTGEI+ E Y    
Sbjct: 175 FANVWAVNRTVNALQRAFLMRTCSDSYYENRTRPCLLYQIKRCSGPCTGEIALEDYSALA 234

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
             A+ FLSG ++ +K+++   M +A+   ++E A   RDR+AALS IQ            
Sbjct: 235 DSARAFLSGKSNAVKDRMREEMQRASEALEFERAARFRDRIAALSAIQGVQGVNTQGVEE 294

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F++       CI+  FF   QN G   +F K D   +  ++L+ F+ QFY DKP P+
Sbjct: 295 ADVFAIDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRSMSADEVLASFISQFYDDKPAPK 354

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +L+S   E+  L+  +   +  ++V++  P++GE++ +++ A  NA  +  ++L+   S
Sbjct: 355 LVLVSHTIEDAELVAAALSSRVEHRVEVHQPQRGERKNLVDYAQRNAKEALGRRLADTAS 414

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L   P+R+E+YDNSHI G +AVG M+V G  GF+K  YR FN+   +
Sbjct: 415 QGKLLTALGQAFGLDKPPRRVEVYDNSHISGTAAVGGMIVAGPTGFMKTHYRTFNIKSEE 474

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK------------------KQEYSFPSW 463
           +   DD  MMR VL RRF +L K    +    +                      +FP+W
Sbjct: 475 LSPGDDFGMMREVLTRRFKRLAKEAPRIPREGEAGEPQAPEKAVPAVAEVQDDPDAFPAW 534

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PD+V++DGG GQL AA+  L ++ V   + +I IAKG  R AG E FFV       L  R
Sbjct: 535 PDLVLIDGGAGQLEAARASLAEIGVTG-VPLIGIAKGRDRDAGRETFFVPGRSPFKLPPR 593

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
           DP+LYF+QRLRDEAHRFAI THR RRK+    +PLDEI GIGP RKR LL  FGTVK I 
Sbjct: 594 DPVLYFVQRLRDEAHRFAIGTHRARRKREMTKNPLDEIAGIGPTRKRALLHHFGTVKAIE 653

Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNT 611
           R++ E LA   G++   A  +Y+ FH N 
Sbjct: 654 RAALEDLAKAPGVNAATARAVYDFFHANA 682


>gi|240139632|ref|YP_002964108.1| DNA exisiton repair enzyme together with UvrAB [Methylobacterium
           extorquens AM1]
 gi|240009605|gb|ACS40831.1| DNA exisiton repair enzyme together with UvrAB [Methylobacterium
           extorquens AM1]
          Length = 682

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 276/629 (43%), Positives = 381/629 (60%), Gaps = 23/629 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D  G VLYVGKA NL+ R+ SY     H++RI  MI+Q   + F  T 
Sbjct: 55  TLPNSPGVYRMFDSKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 114

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T     P + KHR +   +G+Y+GP
Sbjct: 115 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTSDGPAPQIVKHRGARRRKGNYYGP 174

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FA+V AV +T+N+LQR F +R+C+DS + +RTRPCLL+QIKRCSGPCTGEI+ E Y    
Sbjct: 175 FANVWAVNRTVNALQRAFLMRTCSDSYYENRTRPCLLYQIKRCSGPCTGEIALEDYSALA 234

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
             A+ FLSG ++ +K+++   M +A+   ++E A   RDR+AALS IQ            
Sbjct: 235 DSARAFLSGKSNAVKDRMREEMQRASEALEFERAARFRDRIAALSAIQGVQGVNTQGVEE 294

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F++       CI+  FF   QN G   +F K D   +  ++L+ F+ QFY DKP P+
Sbjct: 295 ADVFAIDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRSMSADEVLASFISQFYDDKPAPK 354

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +L+S   E+  L+  +   +  ++V++  P++GE++ +++ A  NA  +  ++L+   S
Sbjct: 355 LVLVSHTIEDAELVAAALSSRVEHRVEVHQPQRGERKNLVDYAQRNAKEALGRRLADTAS 414

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L   P+R+E+YDNSHI G +AVG M+V G  GF+K  YR FN+   +
Sbjct: 415 QGKLLTALGQAFGLDKPPRRVEVYDNSHISGTAAVGGMIVAGPTGFMKTHYRTFNIKSEE 474

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK------------------KQEYSFPSW 463
           +   DD  MMR VL RRF +L K                                +FP+W
Sbjct: 475 LSPGDDFGMMREVLTRRFKRLAKEAPRTPREADAGEPQAPEQAVPAVAEVQDDPDAFPAW 534

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PD+V++DGG GQL AA+  L ++ V   + ++ IAKG  R AG E FFV       L  R
Sbjct: 535 PDLVLIDGGAGQLEAARASLAEIGVTG-VPLVGIAKGRDRDAGRETFFVPGRSPFKLPPR 593

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
           DP+LYF+QRLRDEAHRFAI THR RRK+    +PLDEI GIGP RKR LL  FGTVK I 
Sbjct: 594 DPVLYFVQRLRDEAHRFAIGTHRARRKREMTKNPLDEIAGIGPTRKRALLHHFGTVKAIE 653

Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNT 611
           R++ E LA   G++   A  +Y+ FH N 
Sbjct: 654 RAALEDLAKAPGVNAATARAVYDFFHANA 682


>gi|294852061|ref|ZP_06792734.1| excinuclease ABC [Brucella sp. NVSL 07-0026]
 gi|294820650|gb|EFG37649.1| excinuclease ABC [Brucella sp. NVSL 07-0026]
          Length = 702

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 93  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 152

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 153 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 212

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 213 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 272

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 273 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 332

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 333 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 392

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 393 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 452

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 453 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 512

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 513 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 571

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 572 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 631

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 632 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 691

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 692 ARAIHDHFR 700


>gi|119367493|sp|Q8UGA9|UVRC_AGRT5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 681

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 324/619 (52%), Positives = 424/619 (68%), Gaps = 9/619 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+M + AG VLYVGKA +L+KR+ +Y     H++RI  M+    ++ F  T
Sbjct: 63  KHLPNSPGVYRMFNEAGDVLYVGKARSLKKRVGNYAQGRVHSNRIAQMVRFTTHMEFVTT 122

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  ++ PA++KHR +   +G YFG
Sbjct: 123 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITADNRAPAIFKHRGARARKGDYFG 182

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F +R+C DSVF  RTRPCLL+QIKRCSGPCT E+S E Y E 
Sbjct: 183 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 242

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  IAR MN+A+   D+E A I+RDRLAALSH+Q+H         
Sbjct: 243 VKEAKDFLSGKSQAVKTAIARQMNEASEDLDFERAAIYRDRLAALSHVQSHQGINPAGIE 302

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D     ++IL+ FL QFY DKP P
Sbjct: 303 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLPGSEILNAFLAQFYDDKPVP 362

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLSE  EE  LL  +  ++ G+KV I+VP++GEK+ I +  L NA  +H +KL+   
Sbjct: 363 KQILLSETVEEQELLAAALGEKAGHKVTISVPQRGEKKDITDHVLANAREAHGRKLAETS 422

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +LK F + F LP++P+RIEIYDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 423 SQARLLKGFAETFNLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 482

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-----FHPKKQEYSFPSWPDVVILDGGKGQ 475
           D+   DD  MMR V+ RRFS+L+K E   +        +  +  FP+WPDV+++DGG+GQ
Sbjct: 483 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRAQTPTPEEAADLPFPAWPDVILIDGGQGQ 542

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++A + +L +L + + +T I +AKG  R AG E+FF        L  RDP+LYFIQR+RD
Sbjct: 543 MTAVRAILDELGIRDCVTAIGVAKGVDREAGRERFFADGRSDFSLPPRDPVLYFIQRMRD 602

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI +HR RRKK    +PLDEI+GIGP RKR LLQ FGT K +SR+    L ++ G
Sbjct: 603 EAHRFAIGSHRARRKKEMVRNPLDEISGIGPGRKRSLLQHFGTAKAVSRAGLNDLMTVTG 662

Query: 595 ISKKIACKIYNHFHKNTSH 613
           IS+ +A +IYNHFH++ S 
Sbjct: 663 ISETVARQIYNHFHESGSD 681


>gi|254709820|ref|ZP_05171631.1| excinuclease ABC subunit C [Brucella pinnipedialis B2/94]
 gi|261317358|ref|ZP_05956555.1| UvrABC system protein C [Brucella pinnipedialis B2/94]
 gi|261296581|gb|EEY00078.1| UvrABC system protein C [Brucella pinnipedialis B2/94]
          Length = 690

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 311/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT +I +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRIIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|256031311|ref|ZP_05444925.1| excinuclease ABC subunit C [Brucella pinnipedialis M292/94/1]
 gi|265988396|ref|ZP_06100953.1| UvrABC system protein C [Brucella pinnipedialis M292/94/1]
 gi|264660593|gb|EEZ30854.1| UvrABC system protein C [Brucella pinnipedialis M292/94/1]
          Length = 690

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 311/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT +I +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRIIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|225627198|ref|ZP_03785236.1| excinuclease ABC, C subunit [Brucella ceti str. Cudo]
 gi|225618033|gb|EEH15077.1| excinuclease ABC, C subunit [Brucella ceti str. Cudo]
          Length = 702

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 313/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 93  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 152

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 153 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 212

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 213 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 272

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 273 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 332

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 333 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 392

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 393 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 452

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 453 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 512

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 513 DITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 571

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L K+ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 572 QILGKMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 631

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 632 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 691

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 692 ARAIHDHFR 700


>gi|17987534|ref|NP_540168.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M]
 gi|256044391|ref|ZP_05447295.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563743|ref|ZP_05834229.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M]
 gi|265990810|ref|ZP_06103367.1| UvrABC system protein C [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983236|gb|AAL52432.1| excinuclease abc subunit c [Brucella melitensis bv. 1 str. 16M]
 gi|260153759|gb|EEW88851.1| excinuclease ABC subunit C [Brucella melitensis bv. 1 str. 16M]
 gi|263001594|gb|EEZ14169.1| UvrABC system protein C [Brucella melitensis bv. 1 str. Rev.1]
          Length = 685

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 76  KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 135

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 136 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 195

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 196 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 255

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 256 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 315

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 316 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 375

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 376 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 435

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 436 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 495

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K          K   +FP+WPDV+++DGG+GQ+ A +
Sbjct: 496 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 554

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 555 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 614

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 615 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 674

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 675 ARAIHDHFR 683


>gi|161611214|ref|YP_221454.2| excinuclease ABC subunit C [Brucella abortus bv. 1 str. 9-941]
 gi|162002877|ref|YP_414162.2| excinuclease ABC subunit C [Brucella melitensis biovar Abortus
           2308]
 gi|189023910|ref|YP_001934678.1| excinuclease ABC subunit C [Brucella abortus S19]
 gi|254688970|ref|ZP_05152224.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870]
 gi|254693452|ref|ZP_05155280.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|254697105|ref|ZP_05158933.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730000|ref|ZP_05188578.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292]
 gi|256257219|ref|ZP_05462755.1| excinuclease ABC subunit C [Brucella abortus bv. 9 str. C68]
 gi|260545588|ref|ZP_05821329.1| excinuclease ABC subunit C [Brucella abortus NCTC 8038]
 gi|260754460|ref|ZP_05866808.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870]
 gi|260757679|ref|ZP_05870027.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292]
 gi|260761506|ref|ZP_05873849.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883489|ref|ZP_05895103.1| UvrABC system protein C [Brucella abortus bv. 9 str. C68]
 gi|261213706|ref|ZP_05927987.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|297248068|ref|ZP_06931786.1| excinuclease ABC, C subunit [Brucella abortus bv. 5 str. B3196]
 gi|189019482|gb|ACD72204.1| excinuclease ABC subunit C [Brucella abortus S19]
 gi|260096995|gb|EEW80870.1| excinuclease ABC subunit C [Brucella abortus NCTC 8038]
 gi|260667997|gb|EEX54937.1| excinuclease ABC subunit C [Brucella abortus bv. 4 str. 292]
 gi|260671938|gb|EEX58759.1| excinuclease ABC subunit C [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674568|gb|EEX61389.1| excinuclease ABC subunit C [Brucella abortus bv. 6 str. 870]
 gi|260873017|gb|EEX80086.1| UvrABC system protein C [Brucella abortus bv. 9 str. C68]
 gi|260915313|gb|EEX82174.1| excinuclease ABC subunit C [Brucella abortus bv. 3 str. Tulya]
 gi|297175237|gb|EFH34584.1| excinuclease ABC, C subunit [Brucella abortus bv. 5 str. B3196]
          Length = 690

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K          K   +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|118591881|ref|ZP_01549276.1| excinuclease ABC subunit C [Stappia aggregata IAM 12614]
 gi|118435524|gb|EAV42170.1| excinuclease ABC subunit C [Stappia aggregata IAM 12614]
          Length = 659

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 301/627 (48%), Positives = 409/627 (65%), Gaps = 22/627 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+MLD  G VLYVGKA +L+KR+ SY      ++RI  MI     + F VT
Sbjct: 34  KRLPNGPGVYRMLDENGEVLYVGKARSLKKRVTSYTRLQGQSNRIMRMILATAAMEFVVT 93

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYIL+T  H+ PA+ KHR +   +G YFG
Sbjct: 94  QTEPEALLLEANLIKRLRPRFNVLLRDDKSFPYILVTGDHESPAIVKHRGARKRKGDYFG 153

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV++TIN+LQ+ F +R+C+DS + +R+RPCL +QIKRC+GPCTGEI    Y   
Sbjct: 154 PFASAGAVDRTINALQKAFLIRTCSDSYYENRSRPCLQYQIKRCAGPCTGEIDPADYAGL 213

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K ++A+ M  A+   ++E A I+RDRL+ALSHIQ H         
Sbjct: 214 VSEAKAFLSGRSQLIKTQLAKQMEAASADLEFERAAIYRDRLSALSHIQAHQGINPQSVE 273

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++      C+Q  FF  GQN G   +F K D     A IL  FL QFY DKP P
Sbjct: 274 EADVFAIHQEGGQTCVQVFFFRTGQNWGNRAYFPKADKSFEEADILESFLAQFYDDKPAP 333

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ILLS E  E  LL  +  ++ G KV +  PK+GEK+++++ AL NA  +  ++L+   
Sbjct: 334 RQILLSHELSEQDLLAQALTERTGRKVDVACPKRGEKKELVDHALTNAREALGRRLAETS 393

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +LK   + F L   P+RIE+YDNSHIMG +AVG M+V G  GF K QYRKFN+   
Sbjct: 394 SQARLLKGVAEAFDLAQPPRRIEVYDNSHIMGTNAVGGMIVAGLEGFAKGQYRKFNIKSE 453

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF-----------------PSW 463
           D+   DD  MMR VL RRFS+L+K     +  P+  + +                  P+W
Sbjct: 454 DLVPGDDYGMMREVLTRRFSRLLKEHAREDSKPQADDPTLEDADASDLEAVPTDTGVPAW 513

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           P++V++DGG+GQL+AA+  L+ L + + + ++ IAKGP R AG EKFF+   ++ +L  R
Sbjct: 514 PELVLIDGGQGQLTAARETLESLGITD-VPLVGIAKGPDRDAGREKFFIPGRQSFMLPER 572

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
           DP+LYF+QRLRDEAHRFAI +HR RRKK    +PLDEI G+GP RK+ LL+ FGT K +S
Sbjct: 573 DPVLYFVQRLRDEAHRFAIGSHRARRKKDITRNPLDEIAGVGPTRKKALLRHFGTAKAVS 632

Query: 583 RSSPETLASIEGISKKIACKIYNHFHK 609
           ++  + LA++ GIS+ IA  +Y+HFH+
Sbjct: 633 KAGVDDLAAVPGISEAIAKLVYDHFHE 659


>gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254547847|gb|ACT57072.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 616

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 616/616 (100%), Positives = 616/616 (100%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF
Sbjct: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS
Sbjct: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY
Sbjct: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
           MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN
Sbjct: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
           RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP
Sbjct: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI
Sbjct: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN
Sbjct: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ
Sbjct: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
           GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF
Sbjct: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA
Sbjct: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600

Query: 601 CKIYNHFHKNTSHTPT 616
           CKIYNHFHKNTSHTPT
Sbjct: 601 CKIYNHFHKNTSHTPT 616


>gi|90419512|ref|ZP_01227422.1| excinuclease ABC, C subunit, uvrC [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336449|gb|EAS50190.1| excinuclease ABC, C subunit, uvrC [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 688

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 304/621 (48%), Positives = 404/621 (65%), Gaps = 14/621 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++++P  PGVY+M    G VLYVGKA +L+KR+ +Y     HT RI  MI +   + F  
Sbjct: 66  AKRLPNQPGVYRMFGKDGDVLYVGKARSLKKRVANYTRLGGHTQRIARMIRETRQMEFVT 125

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLEAN+IKRL+PR+N+LLRDDKSFPYIL+++ H+ PA+ KHR + + +GSYF
Sbjct: 126 TRTETEALLLEANLIKRLRPRYNVLLRDDKSFPYILVSEDHEAPAIMKHRGARSRKGSYF 185

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +TINSLQR F LR+C DSV+  RTRPCLL QIKRCS PCTGEIS   Y  
Sbjct: 186 GPFASAGAVGRTINSLQRAFLLRTCTDSVYESRTRPCLLHQIKRCSAPCTGEISIADYDG 245

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V EAK FLSG ++ +K  ++  M +A+   D+E A I+RDRLAALSH+Q+H        
Sbjct: 246 LVREAKAFLSGRSNQIKNGMSAAMQEASDDLDFERAAIYRDRLAALSHVQSHQGINPTGI 305

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D F+++    + CIQ  FF  GQN G   +F K DS    +++L  FL QFY DKP 
Sbjct: 306 EEADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLEPSEVLGAFLAQFYDDKPV 365

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  +LL    ++  LL  +   +  ++V+I VP +G KR +++ A  NA  +  ++L+  
Sbjct: 366 PRLVLLPLMVDDGPLLAEALSLKASHRVQIGVPARGLKRDLVDHATANAREALGRRLAET 425

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            S   +LK   + F L   P+RIE+YDNSHIMG +AVG M+V G  GF KN YRKFN+  
Sbjct: 426 SSQARLLKGVAETFGLARTPRRIEVYDNSHIMGTAAVGGMIVAGPQGFAKNHYRKFNIRG 485

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKN----------EENLNFHPKKQEYSFPSWPDVVIL 469
           +D+   DD  MM+ V+ RRFS+LIK           E+  +      + S P+WPD+V++
Sbjct: 486 DDITPGDDFGMMKEVMRRRFSRLIKEHGDVPLSAQTEDEEDPQDALSDSSMPAWPDLVLI 545

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+SA + +L +L + +R+T I +AKG  R AG E+F   + E   L  RDP+LYF
Sbjct: 546 DGGKGQISAVREILDELGIADRVTTIGVAKGVDRDAGRERFVTGEREPFSLPPRDPVLYF 605

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +QRLRDEAHRFAI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++   
Sbjct: 606 LQRLRDEAHRFAIGTHRARRKKELVKNPLDEIGGIGPSRKRALLHHFGTAKAVSRAALSD 665

Query: 589 LASIEGISKKIACKIYNHFHK 609
           L  +EGIS  +A  IY+HFH+
Sbjct: 666 LREVEGISAAMAKSIYDHFHE 686


>gi|161486699|ref|NP_697713.2| excinuclease ABC subunit C [Brucella suis 1330]
          Length = 690

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 311/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKR +PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRSRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 559

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 560 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 619

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 620 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 679

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 680 ARAIHDHFR 688


>gi|225852219|ref|YP_002732452.1| excinuclease ABC subunit C [Brucella melitensis ATCC 23457]
 gi|256264273|ref|ZP_05466805.1| excinuclease ABC subunit C [Brucella melitensis bv. 2 str. 63/9]
 gi|225640584|gb|ACO00498.1| excinuclease ABC, C subunit [Brucella melitensis ATCC 23457]
 gi|263094533|gb|EEZ18342.1| excinuclease ABC subunit C [Brucella melitensis bv. 2 str. 63/9]
 gi|326408718|gb|ADZ65783.1| excinuclease ABC subunit C [Brucella melitensis M28]
 gi|326538442|gb|ADZ86657.1| excinuclease ABC, C subunit [Brucella melitensis M5-90]
          Length = 685

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 76  KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 135

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 136 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 195

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 196 PFASTGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 255

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 256 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 315

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 316 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 375

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 376 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 435

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 436 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 495

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K          K   +FP+WPDV+++DGG+GQ+ A +
Sbjct: 496 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 554

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 555 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 614

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 615 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 674

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 675 ARAIHDHFR 683


>gi|256113234|ref|ZP_05454102.1| excinuclease ABC subunit C [Brucella melitensis bv. 3 str. Ether]
 gi|265994646|ref|ZP_06107203.1| UvrABC system protein C [Brucella melitensis bv. 3 str. Ether]
 gi|262765759|gb|EEZ11548.1| UvrABC system protein C [Brucella melitensis bv. 3 str. Ether]
          Length = 685

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 314/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 76  KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 135

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 136 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 195

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 196 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 255

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 256 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 315

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 316 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 375

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE AEE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 376 KLVLLSETAEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 435

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 436 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 495

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K          K   +FP+WPDV+++DGG+GQ+ A +
Sbjct: 496 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 554

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 555 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 614

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 615 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 674

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 675 ARAIHDHFR 683


>gi|222085474|ref|YP_002544004.1| excinuclease ABC, C subunit [Agrobacterium radiobacter K84]
 gi|221722922|gb|ACM26078.1| excinuclease ABC, C subunit [Agrobacterium radiobacter K84]
          Length = 680

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 323/620 (52%), Positives = 427/620 (68%), Gaps = 11/620 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M + AG VLYVGKA +L+KR+ +Y     H++RI  M+ +  N+ F  T
Sbjct: 60  KRLPNNPGVYRMFNEAGDVLYVGKARSLKKRVANYAMGRVHSNRIARMVRETANMEFVTT 119

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  H+ PA++KHR +   +G YFG
Sbjct: 120 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGNHRAPAIFKHRGARARKGEYFG 179

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F +R+CADSVF  RTRPCLL+QIKRCSGPCT EIS E Y E 
Sbjct: 180 PFASAGAVGRTINSLQRAFLIRTCADSVFETRTRPCLLYQIKRCSGPCTHEISDEGYAEL 239

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + N+K  +A  MN A    D+E A + RDRLAALSH+Q+H         
Sbjct: 240 VQEAKDFLSGKSQNVKAHMAEAMNAAAEDLDFERAAVFRDRLAALSHVQSHQGINPAGVE 299

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D   ++A++L+ FL QFY DKP P
Sbjct: 300 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLSSAEVLNSFLAQFYDDKPVP 359

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLSE  EE  LL  +  ++ G+KV I VP++GEKR +++  + NA  +H +KL+   
Sbjct: 360 KQILLSETVEEIELLAAALGEKAGHKVSILVPQRGEKRDLVDHVVANAREAHGRKLAETA 419

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+ F + F LP++P+RIEIYDNSHIMG +AVG MVV G  GFVK QYRKFN+   
Sbjct: 420 SQSRLLEGFKETFQLPYVPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKGQYRKFNIKST 479

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFH-------PKKQEYSFPSWPDVVILDGGK 473
           D+   DD  MMR V+ RRFS+L+K E   +             + SFP WPDV+++DGG+
Sbjct: 480 DITPGDDFGMMREVMTRRFSRLLKEEGIPDRSGAAEAAAVDAADQSFPVWPDVILIDGGQ 539

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQ++A + +L++L + + +  I +AKG  R AG E+FF    E+  L  RDP+LYFIQR+
Sbjct: 540 GQMTAVRAILEELGITDSVIAIGVAKGVDRDAGRERFFALSRESFTLPPRDPVLYFIQRM 599

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAI +HR RRKK    +PLDEI GIGP RKR LLQ FGT K +SR++   L ++
Sbjct: 600 RDEAHRFAIGSHRARRKKELVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAV 659

Query: 593 EGISKKIACKIYNHFHKNTS 612
           EGIS+ +A ++YNHFH++ +
Sbjct: 660 EGISEAVATQVYNHFHEDAA 679


>gi|325292503|ref|YP_004278367.1| excinuclease ABC subunit C [Agrobacterium sp. H13-3]
 gi|325060356|gb|ADY64047.1| excinuclease ABC subunit C [Agrobacterium sp. H13-3]
          Length = 683

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 320/621 (51%), Positives = 423/621 (68%), Gaps = 11/621 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+M + A  VLYVGKA +L+KR+ +Y     H++RI  M+    ++ F  T
Sbjct: 63  KHLPNSPGVYRMFNEANDVLYVGKARSLKKRVGNYAQGRVHSNRIAQMVRLTAHMEFVTT 122

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  ++ PA++KHR +   +G YFG
Sbjct: 123 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITADNRAPAIFKHRGARARKGDYFG 182

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F +R+C DSVF  RTRPCLL+QIKRCSGPCT E+S E Y E 
Sbjct: 183 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 242

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K  IAR MN+A    D+E A ++RDRLAALSH+Q+H         
Sbjct: 243 VKEAKDFLSGKSQSVKTAIARQMNEAAEDLDFERAAVYRDRLAALSHVQSHQGINPAGIE 302

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D     ++IL+ FL QFY DKP P
Sbjct: 303 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLPGSEILNAFLAQFYDDKPVP 362

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLSE  EE  LL  +  ++ G+KV I+VP++GEK+ I +  L NA  +H +KL+   
Sbjct: 363 KQILLSETVEEQELLAAALGEKAGHKVTISVPQRGEKKDITDHVLANAREAHGRKLAETS 422

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +LK F + F LP++P+RIEIYDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 423 SQARLLKGFAETFNLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 482

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-------FHPKKQEYSFPSWPDVVILDGGK 473
           D+   DD  MMR V+ RRFS+L+K E   +          +  +  FP+WPDV+++DGG+
Sbjct: 483 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRAQTLTPTPEEAADMPFPAWPDVILIDGGQ 542

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQ++A + +L +L++ + +  I +AKG  R AG E+FF        L  RDP+LYFIQR+
Sbjct: 543 GQMTAVRAILDELDIRDSVIAIGVAKGVDREAGRERFFADGRSDFSLPPRDPVLYFIQRM 602

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAI +HR RRKK    +PLDEI+GIGP RKR LLQ FGT K +SR+    L ++
Sbjct: 603 RDEAHRFAIGSHRARRKKEMVRNPLDEISGIGPGRKRSLLQHFGTAKAVSRAGLNDLMNV 662

Query: 593 EGISKKIACKIYNHFHKNTSH 613
            GIS+ +A +IYNHFH+++  
Sbjct: 663 TGISEAVARQIYNHFHESSGD 683


>gi|237815150|ref|ZP_04594148.1| excinuclease ABC, C subunit [Brucella abortus str. 2308 A]
 gi|237789987|gb|EEP64197.1| excinuclease ABC, C subunit [Brucella abortus str. 2308 A]
          Length = 702

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 93  KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 152

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 153 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 212

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 213 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 272

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 273 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 332

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 333 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 392

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 393 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 452

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 453 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 512

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K          K   +FP+WPDV+++DGG+GQ+ A +
Sbjct: 513 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 571

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 572 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 631

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 632 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 691

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 692 ARAIHDHFR 700


>gi|159184627|ref|NP_354147.2| excinuclease ABC subunit C [Agrobacterium tumefaciens str. C58]
 gi|159139925|gb|AAK86932.2| excinuclease ABC chain C [Agrobacterium tumefaciens str. C58]
          Length = 642

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 324/619 (52%), Positives = 424/619 (68%), Gaps = 9/619 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+M + AG VLYVGKA +L+KR+ +Y     H++RI  M+    ++ F  T
Sbjct: 24  KHLPNSPGVYRMFNEAGDVLYVGKARSLKKRVGNYAQGRVHSNRIAQMVRFTTHMEFVTT 83

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  ++ PA++KHR +   +G YFG
Sbjct: 84  RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITADNRAPAIFKHRGARARKGDYFG 143

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F +R+C DSVF  RTRPCLL+QIKRCSGPCT E+S E Y E 
Sbjct: 144 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 203

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K  IAR MN+A+   D+E A I+RDRLAALSH+Q+H         
Sbjct: 204 VKEAKDFLSGKSQAVKTAIARQMNEASEDLDFERAAIYRDRLAALSHVQSHQGINPAGIE 263

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++H   ++CIQ  FF  GQN G   +F K D     ++IL+ FL QFY DKP P
Sbjct: 264 EADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLPGSEILNAFLAQFYDDKPVP 323

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLSE  EE  LL  +  ++ G+KV I+VP++GEK+ I +  L NA  +H +KL+   
Sbjct: 324 KQILLSETVEEQELLAAALGEKAGHKVTISVPQRGEKKDITDHVLANAREAHGRKLAETS 383

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +LK F + F LP++P+RIEIYDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 384 SQARLLKGFAETFNLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIKST 443

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLN-----FHPKKQEYSFPSWPDVVILDGGKGQ 475
           D+   DD  MMR V+ RRFS+L+K E   +        +  +  FP+WPDV+++DGG+GQ
Sbjct: 444 DITPGDDFGMMREVMTRRFSRLLKEEGKPDRAQTPTPEEAADLPFPAWPDVILIDGGQGQ 503

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++A + +L +L + + +T I +AKG  R AG E+FF        L  RDP+LYFIQR+RD
Sbjct: 504 MTAVRAILDELGIRDCVTAIGVAKGVDREAGRERFFADGRSDFSLPPRDPVLYFIQRMRD 563

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI +HR RRKK    +PLDEI+GIGP RKR LLQ FGT K +SR+    L ++ G
Sbjct: 564 EAHRFAIGSHRARRKKEMVRNPLDEISGIGPGRKRSLLQHFGTAKAVSRAGLNDLMTVTG 623

Query: 595 ISKKIACKIYNHFHKNTSH 613
           IS+ +A +IYNHFH++ S 
Sbjct: 624 ISETVARQIYNHFHESGSD 642


>gi|256369133|ref|YP_003106641.1| excinuclease ABC subunit C [Brucella microti CCM 4915]
 gi|255999293|gb|ACU47692.1| excinuclease ABC subunit C [Brucella microti CCM 4915]
          Length = 611

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 312/609 (51%), Positives = 419/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 2   KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 61

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 62  RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 121

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 122 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 181

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 182 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 241

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 242 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 301

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 302 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 361

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 362 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 421

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 422 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 480

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 481 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 540

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 541 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 600

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 601 ARAIHDHFR 609


>gi|75497050|sp|Q57E41|UVRC_BRUAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|62195793|gb|AAX74093.1| UvrC, excinuclease ABC, C subunit [Brucella abortus bv. 1 str.
           9-941]
          Length = 627

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 18  KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 77

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 78  RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 137

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 138 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 197

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 198 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 257

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 258 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 317

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 318 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 377

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 378 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 437

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K          K   +FP+WPDV+++DGG+GQ+ A +
Sbjct: 438 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 496

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 497 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 556

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 557 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 616

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 617 ARAIHDHFR 625


>gi|254503952|ref|ZP_05116103.1| excinuclease ABC, C subunit [Labrenzia alexandrii DFL-11]
 gi|222440023|gb|EEE46702.1| excinuclease ABC, C subunit [Labrenzia alexandrii DFL-11]
          Length = 656

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 300/624 (48%), Positives = 405/624 (64%), Gaps = 19/624 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+MLD  G VLYVGKA +L+KR+ SY      ++RI  MI     + F VT
Sbjct: 34  KRLPNGPGVYRMLDENGEVLYVGKARSLKKRVTSYTRLQGQSNRIMRMILVTTAMEFVVT 93

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKR +PRFN+LLRDDKSFPYIL+T  H+  A+ KHR +   +G YFG
Sbjct: 94  NTEPEALLLEANLIKRFRPRFNVLLRDDKSFPYILVTGDHESAAIVKHRGARKRKGDYFG 153

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV++TIN+LQ+ F +R+C+DS + +RTRPCL +QIKRC+GPCTGEI+ E Y   
Sbjct: 154 PFASAGAVDRTINALQKAFLIRTCSDSYYENRTRPCLQYQIKRCAGPCTGEIAPEDYAGL 213

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +KE++A  M  A+   ++E A I+RDRLAALSH+Q H        +
Sbjct: 214 VSEAKAFLSGRSQLIKEQLASQMETASADLEFERAAIYRDRLAALSHVQAHQGINPQTVD 273

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++     +C+Q  FF  GQN G   +F K D     A IL  FL QFY DKP P
Sbjct: 274 EADVFAIHQEGGQSCVQVFFFRTGQNWGNRAYFPKADKSWDEADILESFLAQFYDDKPAP 333

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLS    E  LL  +  ++   KV++TVPK+GEK++++  A+ NA  +  ++L+   
Sbjct: 334 KQILLSHPLGEQELLGEALSERMSRKVEVTVPKRGEKKELVLHAMTNAREALGRRLAETS 393

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +LK   + F L   P+RIE+YDNSHIMG +AVG M+V G  GF K  YRKFN+   
Sbjct: 394 SQARLLKGVAEAFDLATPPRRIEVYDNSHIMGTNAVGGMIVAGPEGFAKAHYRKFNIKSE 453

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS--------------WPDV 466
           D+   DD  MMR VL RRFS+L+K           +    P               WPD+
Sbjct: 454 DLVPGDDYGMMREVLTRRFSRLMKEHARPEGSKTSKPTDTPEAEEADAPVNTDVPAWPDL 513

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           V++DGG+GQL+AA+  L++L + + + ++ IAKGP R AG EKFF+    + +L  RDP+
Sbjct: 514 VLIDGGQGQLTAARETLEELGLTD-VPLVGIAKGPDRDAGREKFFITGKPSFMLPERDPV 572

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           LYF+QRLRDEAHRFAI +HR RRKK    +PLDEI G+GP RK+ LL  FGT K +S++ 
Sbjct: 573 LYFVQRLRDEAHRFAIGSHRARRKKDIAKNPLDEIAGVGPTRKKALLSHFGTAKAVSKAG 632

Query: 586 PETLASIEGISKKIACKIYNHFHK 609
            + LA++ GIS+ IA  +Y+HFH+
Sbjct: 633 VDDLAAVPGISEAIARLVYDHFHE 656


>gi|170751775|ref|YP_001758035.1| excinuclease ABC, C subunit [Methylobacterium radiotolerans JCM
           2831]
 gi|170658297|gb|ACB27352.1| excinuclease ABC, C subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 688

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 283/624 (45%), Positives = 380/624 (60%), Gaps = 21/624 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D  G VLYVGKA NL+ R+ SY     H++RI  MISQ   + F  T 
Sbjct: 63  TLPSSPGVYRMFDHRGDVLYVGKAKNLKARVGSYARGQAHSNRIARMISQTAAMEFVTTA 122

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+TD    P + KHR +   +G+Y+GP
Sbjct: 123 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILVTDDGPAPQIVKHRGARRRKGNYYGP 182

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FASV AV +T+N+LQR F LR+C DS + +RTRPCLL+QIKRCSGPCT EI  E Y    
Sbjct: 183 FASVWAVNRTVNALQRAFLLRTCTDSYYENRTRPCLLYQIKRCSGPCTNEIGPEDYAAMA 242

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
             A+ FL+G ++ +K+++   M  A+   ++E A   RDR+AALS IQ            
Sbjct: 243 DSARAFLAGKSNAVKDRMRAEMQAASEAMEFERAARFRDRIAALSAIQGVQGVNTQGVEE 302

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F+L       CI+  FF   QN G   +F K D   T  ++L  F+ QFY DKP P 
Sbjct: 303 ADVFALDEQAGQFCIEVFFFRNFQNWGNRAYFPKADRTMTPDEVLGSFIGQFYDDKPAPR 362

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +L S   E+  L+  +   +  Y+V+I  P +GE++ +++ A  NA  +  ++L+   S
Sbjct: 363 TVLTSHAIEDAELVAAALSSRVEYRVEIHRPSRGERKNLVDYAQRNAKEALARRLADTAS 422

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L   P+RIE+YDNSHIMG +AVG M+V G  GF+K  YR FN+   D
Sbjct: 423 QGKLLAALGQAFGLDGAPRRIEVYDNSHIMGTNAVGGMIVAGPTGFMKAHYRTFNIKSED 482

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFH----------------PKKQEYSFPSWPD 465
           +   DD  MMR VL+RRF +L+K                        P ++  +FP+WPD
Sbjct: 483 LTPGDDYGMMREVLQRRFKRLVKEAPRTEREAAASAGEGDVPEPVPAPAEESDAFPAWPD 542

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           +V++DGGKGQL AA+  L+++ V   + ++ +AKG  R AG E FFV       L  RDP
Sbjct: 543 LVLIDGGKGQLEAARAALEEVGVAG-VPLVGVAKGRDRDAGRETFFVPGRPPFKLPPRDP 601

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            LYF+QRLRDEAHRFAI +HR +RK+    +PLDEI GIGP RKR LL  FGTVK I R+
Sbjct: 602 TLYFVQRLRDEAHRFAIGSHRAKRKREMVKNPLDEIAGIGPSRKRALLHHFGTVKAIQRA 661

Query: 585 SPETLASIEGISKKIACKIYNHFH 608
           + E LA   G++   A  +Y+ FH
Sbjct: 662 AFEDLARTPGVNAATARAVYDFFH 685


>gi|319784398|ref|YP_004143874.1| excinuclease ABCsubunit C [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170286|gb|ADV13824.1| excinuclease ABC, C subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 687

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 316/621 (50%), Positives = 423/621 (68%), Gaps = 14/621 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M++ AG VLYVGKA +L+KR+ +Y     HT RI  M+ + + + F VT
Sbjct: 67  KRLPNAPGVYRMMNAAGDVLYVGKARSLKKRVTNYAQGRFHTTRIGRMVRETSTMEFVVT 126

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H  P +YKHR + + +G YFG
Sbjct: 127 RTEIEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHVSPGIYKHRGARSRKGDYFG 186

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F LRSC +S + +RTRPCLL+QIKRC+GPCTGE+S + Y E 
Sbjct: 187 PFASAGAVGRTINSLQRAFLLRSCTNSFYENRTRPCLLYQIKRCAGPCTGEVSHQDYAEL 246

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V+EAK FLSG +  +K +I+  M QA+   D+E A I+RDRLAALSH+Q+H        +
Sbjct: 247 VNEAKDFLSGRSQKVKTEISAAMQQASEALDFERAAIYRDRLAALSHVQSHQGINPATVD 306

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++      CIQ  FF  GQN G   +F K D     A++L  FL QFY DKP P
Sbjct: 307 EADVFAIHQEGGQVCIQVFFFRTGQNWGNRAYFPKADPALEAAEVLGSFLAQFYDDKPTP 366

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
            NILLS   E+  LL  +   + G KV I+VP++GEK+ + + AL NA  +  ++L+   
Sbjct: 367 RNILLSHGVEDQELLAEALSTRAGRKVAISVPQRGEKKDLTDNALQNAREALGRRLAETS 426

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   +L  F + F LP  P RIE+YDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 427 TQGRLLAGFAETFGLPKPPVRIEVYDNSHIMGTNAVGAMVVAGPEGFVKNQYRKFNIRST 486

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ----------EYSFPSWPDVVILD 470
           ++   DD  MMR V+ERRFS+L+K   ++                   SFP+WPDV+++D
Sbjct: 487 EITPGDDFGMMREVMERRFSRLLKEHGDVPAGDAADGSADDMEDDISGSFPAWPDVILID 546

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG+GQ++A + +L  L +E+R+  I IAKG  R AG E+FFVK  ++  L +RDP+LYF+
Sbjct: 547 GGQGQMTAVRKILADLGIEDRVVAIGIAKGQDRDAGRERFFVKGRDSFSLPVRDPVLYFV 606

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QRLRDE HRFAI +HR RRKK    SPLDEI+GIGP RKR LL +FGT K +SR++ E L
Sbjct: 607 QRLRDEVHRFAIGSHRARRKKEMVKSPLDEISGIGPGRKRALLLAFGTAKAVSRAAIEDL 666

Query: 590 ASIEGISKKIACKIYNHFHKN 610
             ++GIS+++A  +YNHFH++
Sbjct: 667 RKVDGISEQVAKLVYNHFHES 687


>gi|328542834|ref|YP_004302943.1| excinuclease ABC subunit C [polymorphum gilvum SL003B-26A1]
 gi|326412580|gb|ADZ69643.1| excinuclease ABC subunit C [Polymorphum gilvum SL003B-26A1]
          Length = 664

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 300/616 (48%), Positives = 403/616 (65%), Gaps = 12/616 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+MLD  G VLYVGKA +L+KR+ SY      ++RI  MI     + F +T
Sbjct: 49  KRLPMGPGVYRMLDENGDVLYVGKARSLKKRVTSYTRLQGQSNRILRMIMATAAMEFVLT 108

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYIL+T  H  PA+ KHR +   +G YFG
Sbjct: 109 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILLTADHAAPAIVKHRGARKRKGDYFG 168

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQ+ F +R+C+DS F +R+RPCLL+QIKRC+GPCTGE   E Y   
Sbjct: 169 PFASAGAVNRTINALQKAFLIRNCSDSYFENRSRPCLLYQIKRCAGPCTGETGPEDYAGL 228

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EA+ FLSG +  +K+ +A  M  A  + D+E A ++RDRLAALSH+Q H         
Sbjct: 229 VAEARAFLSGRSQLVKKDLAAQMEAAAEQLDFEQAAVYRDRLAALSHVQAHQGINPQGVE 288

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++ +    C+Q  FF  GQN G   +F K D     A +L  FL QFY DKP P
Sbjct: 289 EADVFAVHQDGGQTCVQVFFFRTGQNWGNRAYFPKADKSLDEAAVLESFLAQFYDDKPAP 348

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ILLS   EE  LL  +  ++   KV+++VP++GEK+ +++ AL NA  +  ++L+   
Sbjct: 349 RLILLSHAIEEQDLLARALSERSNRKVEVSVPRRGEKKALVDHALTNAREALGRRLAETS 408

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   K F L   P+RIE+YDNSHIMG +AVG M+V G  GF K QYRKFN+   
Sbjct: 409 SQARLLEGVAKVFGLAAPPRRIEVYDNSHIMGTNAVGAMIVAGPEGFAKGQYRKFNIRSQ 468

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-------EYSFPSWPDVVILDGGK 473
           ++   DD  MMR VL RRFS+L+K  +        +           P+WPD+V++DGG+
Sbjct: 469 ELTPGDDYGMMREVLTRRFSRLLKEHQRPGAEVADEALAGAAGASDVPAWPDLVLIDGGQ 528

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQL+A + +L  L V + + +  IAKGP R AG EKFF++   + +L  RDP+LYF+QRL
Sbjct: 529 GQLNAVRDILADLGVTD-VPLAGIAKGPDRDAGREKFFMEGRPSFMLPERDPVLYFVQRL 587

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAI +HR RRKK    +PLDEI GIGP RKR LL+ FGT K +S++  E L ++
Sbjct: 588 RDEAHRFAIGSHRARRKKDIARNPLDEIAGIGPTRKRALLRHFGTAKAVSKAGIEDLVAV 647

Query: 593 EGISKKIACKIYNHFH 608
            GIS+ +A +IY+HFH
Sbjct: 648 AGISEAVAKQIYDHFH 663


>gi|170740870|ref|YP_001769525.1| excinuclease ABC, C subunit [Methylobacterium sp. 4-46]
 gi|168195144|gb|ACA17091.1| excinuclease ABC, C subunit [Methylobacterium sp. 4-46]
          Length = 668

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 291/612 (47%), Positives = 387/612 (63%), Gaps = 6/612 (0%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+MLD  G VLYVGKA NL+ R+ SY     H++RI  MI++  ++ F  T 
Sbjct: 58  TLPPSPGVYRMLDAKGDVLYVGKAKNLKNRVGSYARGQAHSNRIARMIAETASMEFVTTV 117

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IK+LKPRFN+L+RDDKS PYIL+T   + P L KHR +    G YFGP
Sbjct: 118 TETEALLLEANLIKQLKPRFNVLMRDDKSLPYILLTADTEAPQLVKHRGARRRPGHYFGP 177

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FASV AV +T+N+LQR F LRSC+DS + +R+RPCLL+QIKRCSGPCTGEI+   Y    
Sbjct: 178 FASVWAVNRTVNALQRAFLLRSCSDSYYENRSRPCLLYQIKRCSGPCTGEIAPADYALLA 237

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            EA+ FLSG + ++KE++A +M  A    ++E A  +RDR+AAL+ IQ            
Sbjct: 238 DEARAFLSGKSTSVKERLAADMQAAAEAWEFEKAARYRDRIAALAAIQGVQGVNTQDIEE 297

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F+L       CI+  FF   QN G   +F K D   + +++L  F+ QFY DKP P 
Sbjct: 298 ADVFALDEQAGQFCIEVFFFRNWQNWGNRAYFPKADRSMSASEVLGSFIGQFYDDKPAPR 357

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            IL+S E E+  LL  +   +   +V+I  PK+GE++ +I+ A  NA  +  ++L+   S
Sbjct: 358 LILVSHEIEDAELLAAALSTRIDARVEIHQPKRGERKNLIDYAARNAREALARRLADTAS 417

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F LP  P+R+E+YDNSHIMG +AVG MVV G  GF+K  YR F +   D
Sbjct: 418 QGKLLAALGQAFGLPRPPRRVEVYDNSHIMGTNAVGAMVVAGPTGFMKTHYRTFTIKSPD 477

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVILDGGKGQLSAAQ 480
           VK  DD  MMR VL RRF++L+K         +  +  +FP+WPD+V++DGGKGQL AA+
Sbjct: 478 VKPGDDFGMMREVLHRRFARLVKEAPRQEGEAEPADADAFPAWPDLVLIDGGKGQLEAAR 537

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
             L ++ V   + ++ IAKG  R AG E FFV+      L  RDP LYF+QRLRDEAHRF
Sbjct: 538 AALAEVGVTG-VPLVGIAKGRDRDAGRETFFVEGQPPFKLPPRDPTLYFVQRLRDEAHRF 596

Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI  HR +RK+    +PLDEI GIGP RKR LL  FGTVK I R++ E LA   G++   
Sbjct: 597 AIGAHRAKRKRELVKNPLDEIPGIGPTRKRALLHHFGTVKAIERAALEDLAKTPGVNAAT 656

Query: 600 ACKIYNHFHKNT 611
           A  +Y+ FH N 
Sbjct: 657 ARAVYDFFHANA 668


>gi|38258822|sp|Q8YGA9|UVRC_BRUME RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|90111059|sp|Q2YN35|UVRC_BRUA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|82615689|emb|CAJ10676.1| Excinuclease ABC, C subunit, N-terminal:Helix-hairpin-helix
           motif:Excinuclease ABC, C subunit, C-terminal:UvrB/UvrC
           protein:H [Brucella melitensis biovar Abortus 2308]
          Length = 611

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 313/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 2   KRLPNNPGVYRMFNSDGGVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 61

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 62  RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 121

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 122 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 181

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 182 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 241

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 242 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 301

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 302 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 361

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 362 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 421

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K          K   +FP+WPDV+++DGG+GQ+ A +
Sbjct: 422 DITPGDDFGMMREVIERRFSRLVKEH-GTPAGEVKNPDAFPAWPDVILIDGGQGQVGAVR 480

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 481 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 540

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 541 AIGTHRARRKKEIVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 600

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 601 ARAIHDHFR 609


>gi|38258795|sp|Q8G1L5|UVRC_BRUSU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|23347500|gb|AAN29628.1| excinuclease ABC, C subunit [Brucella suis 1330]
          Length = 611

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 311/609 (51%), Positives = 418/609 (68%), Gaps = 5/609 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 2   KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 61

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKR +PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 62  RTETEALLLEANLIKRSRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 121

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 122 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 181

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 182 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 241

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 242 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 301

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 302 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 361

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 362 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 421

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ+ A +
Sbjct: 422 DITPGDDFGMMREVIERRFSRLVKEHGTPAGEVENPD-AFPAWPDVILIDGGQGQVGAVR 480

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRDEAHRF
Sbjct: 481 QILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRDEAHRF 540

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+GIS+ +
Sbjct: 541 AIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDGISEAM 600

Query: 600 ACKIYNHFH 608
           A  I++HF 
Sbjct: 601 ARAIHDHFR 609


>gi|260469598|ref|ZP_05813763.1| excinuclease ABC, C subunit [Mesorhizobium opportunistum WSM2075]
 gi|259028624|gb|EEW29935.1| excinuclease ABC, C subunit [Mesorhizobium opportunistum WSM2075]
          Length = 684

 Score =  585 bits (1507), Expect = e-165,   Method: Composition-based stats.
 Identities = 313/618 (50%), Positives = 422/618 (68%), Gaps = 11/618 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M++ AG VLYVGKA +L+KR+ +Y     HT+RI  M+ + + + F VT
Sbjct: 67  KRLPNAPGVYRMMNAAGDVLYVGKARSLKKRVTNYAQGRFHTNRIGRMVRETSTMEFVVT 126

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H  P +YKHR + + +G YFG
Sbjct: 127 RTEIEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHISPGIYKHRGARSRKGDYFG 186

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F LRSC +S + +R+RPCLL+QIKRC+GPCTGEIS E Y E 
Sbjct: 187 PFASAGAVGRTINSLQRAFLLRSCTNSFYENRSRPCLLYQIKRCAGPCTGEISHEGYAEL 246

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K +I+  M QA+   D+E A I+RDRLAAL+H+Q+H        +
Sbjct: 247 VEEAKDFLSGRSQKVKTEISAAMQQASEDLDFERAAIYRDRLAALAHVQSHQGINPATVD 306

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++      CIQ  FF  GQN G   +F K D     +++L  FL QFY DKP P
Sbjct: 307 EADVFAIHQEGGQVCIQVFFFRTGQNWGNRAYFPKADPALEGSEVLGSFLAQFYDDKPTP 366

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ILLS+  E+  LL  +   + G KV I+VP++GEK+ + + AL NA  +  ++L+   
Sbjct: 367 RAILLSQTVEDQELLAEALSTRAGRKVAISVPQRGEKKDLTDNALQNAREALGRRLAETS 426

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   +L  F + F L   P RIE+YDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 427 TQGRLLAGFAETFGLAKPPVRIEVYDNSHIMGTNAVGAMVVAGPEGFVKNQYRKFNIRST 486

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-------EYSFPSWPDVVILDGGK 473
           ++   DD  MMR V+ERRFS+L+K   ++      +         SFP+WPDV+++DGG+
Sbjct: 487 EITPGDDFGMMREVMERRFSRLLKEHGDVKPDDVTEAADEDDISGSFPAWPDVILIDGGQ 546

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQ++A + +L  L +E+R+  I IAKG  R AG E+FFVK  ++  L +RDP+LYF+QRL
Sbjct: 547 GQMTAVRKILSDLGIEDRVVAIGIAKGQDRDAGRERFFVKGRDSFSLPVRDPVLYFVQRL 606

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE HRFAI +HR RRKK    SPLDEI+GIGP RKR LL  FGT K +SR++ E L  +
Sbjct: 607 RDEVHRFAIGSHRARRKKEMVKSPLDEISGIGPGRKRALLLHFGTAKAVSRAAIEDLRKV 666

Query: 593 EGISKKIACKIYNHFHKN 610
           +GIS+++A  +YNHFH++
Sbjct: 667 DGISEQVAKLVYNHFHES 684


>gi|220923621|ref|YP_002498923.1| excinuclease ABC subunit C [Methylobacterium nodulans ORS 2060]
 gi|219948228|gb|ACL58620.1| excinuclease ABC, C subunit [Methylobacterium nodulans ORS 2060]
          Length = 668

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 289/612 (47%), Positives = 389/612 (63%), Gaps = 6/612 (0%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+MLD  G VLYVGKA NL+ R+ SY     H++RI  MI++  ++ F  T 
Sbjct: 58  TLPPSPGVYRMLDAKGDVLYVGKAKNLKNRVGSYARGQAHSNRIARMIAETASMEFVTTA 117

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IK+LKPRFN+L+RDDKS PYIL+T   + P L KHR +    G YFGP
Sbjct: 118 TETEALLLEANLIKQLKPRFNVLMRDDKSLPYILLTADTEAPQLVKHRGARRRPGHYFGP 177

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FASV AV +T+N+LQR F LRSC+DS + +RTRPCLLFQIKRCSGPCTGEI+ + Y    
Sbjct: 178 FASVWAVNRTVNALQRAFLLRSCSDSYYENRTRPCLLFQIKRCSGPCTGEIAPQDYAALA 237

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            EA+ FLSG ++++KE++A +M  A    ++E A  +RDR+AAL+ IQ            
Sbjct: 238 DEARAFLSGKSNSVKERLAADMQAAADAWEFEKAARYRDRIAALAAIQGVQGVNTQDIEE 297

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F+L       CI+  FF   QN G   +F K D   T +++L  F+ QFY DKP P 
Sbjct: 298 ADVFALDEQAGQFCIEVFFFRNWQNWGNRAYFPKADRTMTASEVLGSFIGQFYDDKPAPR 357

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            IL+S   E+  LL  +   +   +V+I  PK+GE++ +I+ A  NA  +  ++L+   S
Sbjct: 358 LILVSHAIEDAELLAAALSTRTDSRVEIHAPKRGERKNLIDYAARNAKEALGRRLADTAS 417

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L   P+RIE+YDNSHIMG +AVG M+V G  GF+K  YR F +   +
Sbjct: 418 QAKLLAALGQAFGLKRAPRRIEVYDNSHIMGTNAVGAMIVAGPTGFMKTHYRTFTIKSQE 477

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVILDGGKGQLSAAQ 480
           V+  DD  MMR VL RRFS+L+K     +   +  +  +FP+WPD+V++DGGKGQL AA+
Sbjct: 478 VRPGDDYGMMREVLHRRFSRLVKEAPRRDGAEEPADADAFPAWPDLVLIDGGKGQLEAAR 537

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
             L ++ V + + ++ IAKG  R AG E FF++      L  RDP LYF+QRLRDEAHRF
Sbjct: 538 AALAEIGVTD-VPLVGIAKGRDRDAGRETFFMEGQPPFKLPPRDPTLYFVQRLRDEAHRF 596

Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI  HR +RK+    +PLDEI GIGP RKR LL  FGTVK I R++ E L+   G++   
Sbjct: 597 AIGAHRAKRKRELVKNPLDEIPGIGPTRKRALLHHFGTVKAIERAALEDLSRTPGVNAAT 656

Query: 600 ACKIYNHFHKNT 611
           A  +Y+ FH N 
Sbjct: 657 ARAVYDFFHANA 668


>gi|13476555|ref|NP_108125.1| excinuclease ABC subunit C [Mesorhizobium loti MAFF303099]
 gi|81776470|sp|Q984P3|UVRC_RHILO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|14027316|dbj|BAB54270.1| excinuclease ABC subunit C [Mesorhizobium loti MAFF303099]
          Length = 688

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 318/622 (51%), Positives = 421/622 (67%), Gaps = 15/622 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M++ AG VLYVGKA +L+KR+ +Y     HT+RI  M+ + + + F VT
Sbjct: 67  KRLPNAPGVYRMMNAAGDVLYVGKARSLKKRVTNYAQGRFHTNRIGRMVRETSTMEFVVT 126

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H  P +YKHR + + +G YFG
Sbjct: 127 RTEIEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHVSPGIYKHRGARSRKGDYFG 186

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F LRSC +S + +RTRPCLL+QIKRC+GPCTGEIS E Y E 
Sbjct: 187 PFASAGAVGRTINSLQRAFLLRSCTNSFYENRTRPCLLYQIKRCAGPCTGEISHEGYAEL 246

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K +I+  M QA+   D+E A I+RDRLAALSH+Q+H        +
Sbjct: 247 VAEAKDFLSGRSQKVKTEISAAMQQASEDLDFERAAIYRDRLAALSHVQSHQGINPATVD 306

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++      CIQ  FF  GQN G   +F K D     A++L  FL QFY DKP P
Sbjct: 307 EADVFAIHQEGGQVCIQVFFFRTGQNWGNRAYFPKADPALEAAEVLGSFLAQFYDDKPTP 366

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
            NILLS   E+  LL  +   + G KV I+VP++GEK+ + + AL NA  +  ++L+   
Sbjct: 367 RNILLSRGVEDQELLGEALSTRAGRKVTISVPQRGEKKDLTDNALQNAREALGRRLAETS 426

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   +L  F + F L   P RIE+YDNSHIMG +AVG MVV G  GFVKNQYRKFN+   
Sbjct: 427 TQGRLLAGFAETFGLAKPPVRIEVYDNSHIMGTNAVGAMVVAGPEGFVKNQYRKFNIRST 486

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNE-----------ENLNFHPKKQEYSFPSWPDVVIL 469
           ++   DD  MMR V+ERRFS+L+K             E  +        SFP+WPDV+++
Sbjct: 487 EITPGDDFGMMREVMERRFSRLLKEHGDVAPNDAASAEAGDDIEDDISGSFPAWPDVILI 546

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++A + +L  L +E+R+  I IAKG  R AG E+FFVK  ++  L +RDP+LYF
Sbjct: 547 DGGQGQMTAVRKILADLGIEDRVVAIGIAKGQDRDAGRERFFVKGRDSFSLPVRDPVLYF 606

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +QRLRDE HRFAI +HR RRKK    SPLDEI GIGP RKR LL +FGT K +SR++ E 
Sbjct: 607 VQRLRDEVHRFAIGSHRARRKKEMVKSPLDEIAGIGPGRKRALLLAFGTAKAVSRAAIED 666

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           L  ++GIS+++A  +YNHFH++
Sbjct: 667 LRKVDGISEQVAKLVYNHFHES 688


>gi|220935076|ref|YP_002513975.1| excinuclease ABC subunit C [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996386|gb|ACL72988.1| excinuclease ABC subunit C [Thioalkalivibrio sp. HL-EbGR7]
          Length = 609

 Score =  582 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 231/609 (37%), Positives = 345/609 (56%), Gaps = 22/609 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+ML  AG VLYVGKA +L+KR+ SY  SN  + RI  M+SQI+NI  TVT 
Sbjct: 18  TLTHRPGVYRMLGGAGEVLYVGKAKDLKKRVASYFRSNVSSARIRSMVSQIHNIEVTVTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE+N+IK  +PR+N+LLRDDKS+PYIL+T  H  P L  HR +    G YFGP
Sbjct: 78  TEAEALLLESNLIKEHRPRYNVLLRDDKSYPYILVT-DHAFPRLTFHRGARKPGGRYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  AV +T+N LQ+ F +R C DS F++R+RPCL +QI+RC+ PC G ++   Y + V
Sbjct: 137 YPSAGAVRETLNLLQKLFLVRQCEDSFFQNRSRPCLQYQIRRCTAPCVGLVNEATYRQDV 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242
             A +FL G +  +   +   M QA+ +  +E A  +RD++  L  I            +
Sbjct: 197 EHAVQFLEGKSEAVIRDLVVRMEQASERLAFEEAARYRDQITRLRQISEQQYISGAGGDV 256

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  + +     AC+Q  F   G + G    F     +++  +++S FL Q+Y  +  P  
Sbjct: 257 DIIACHQASGQACVQVFFVRGGHHLGNKALFPSVPEDTSAEELISAFLAQYYLSREVPAE 316

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           I+LS   E+  +L     ++ G  V ++   +GE+ + +E A  NA  +   +L++    
Sbjct: 317 IILSHVPEDAEVLTEVLGERRGRAVSLSWNVRGERARWLEMAERNAELALRTRLASRAGM 376

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           +  L+   +   L  +P R+E +D SH  G   V   VV    G VK+ YR+FN+    +
Sbjct: 377 RERLEALAEALDLDELPSRMECFDISHTQGELTVASCVVFDAEGPVKSDYRRFNIEG--I 434

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  L+RR+++L + E                 PDV+ +DGGKGQ+  A  V
Sbjct: 435 TPGDDYAAMRQALQRRYTRLKEGE--------------GRLPDVLFIDGGKGQVRQALEV 480

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFA 541
           L++L V+    +   AKG  R  G+E   +   E   +L      L+ IQ++RDEAHRFA
Sbjct: 481 LEELQVQGVSVVGV-AKGADRKPGLETLVLSDSERPTILPPGSSALHLIQQIRDEAHRFA 539

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR+RR KA   SPL++I G+GP R++ LL+ FG ++ +SR+    L+ + GIS+K+A
Sbjct: 540 ITGHRQRRAKARTASPLEQIPGMGPKRRQQLLKHFGGLRGVSRAGVAELSKVPGISRKLA 599

Query: 601 CKIYNHFHK 609
            +IY+ FH+
Sbjct: 600 QQIYDSFHE 608


>gi|91776156|ref|YP_545912.1| excinuclease ABC subunit C [Methylobacillus flagellatus KT]
 gi|119367669|sp|Q1H0B6|UVRC_METFK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91710143|gb|ABE50071.1| Excinuclease ABC subunit C [Methylobacillus flagellatus KT]
          Length = 599

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 222/611 (36%), Positives = 335/611 (54%), Gaps = 24/611 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M++    V+YVGKA +L+KR+ SY   N  + R   M+S I  I  TV
Sbjct: 8   LKNLPNLPGVYRMINAQDEVIYVGKARDLKKRVSSYFQKNLPSARTRLMVSNIARIETTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLE N+IK   PR+N+L RDDKS+PYI +T     P L  HR +     SYF
Sbjct: 68  TRSEAEALLLENNLIKGFMPRYNVLFRDDKSYPYIALT-GDTFPRLAFHRGAQRKGSSYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +  AV ++I  LQ+ F LR+C ++VF +R+RPCLL QI+RC+ PC G IS E Y  
Sbjct: 127 GPFPNAVAVRESIQLLQKVFRLRTCENTVFANRSRPCLLHQIERCTAPCVGFISEEDYRR 186

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239
            V  A  FL G    + +++   MN+A  K +YE A ++RDR+ +L  +Q          
Sbjct: 187 DVMHASLFLQGKEQQVMDELGEKMNEAAEKMEYELAAVYRDRIQSLRQVQAKQFVSDFNV 246

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           +  D  +    +   C+       G + G  +FF K    +     +  FL Q Y     
Sbjct: 247 SDADVIACAELEGQWCVNLVMIRGGHHLGDKSFFPKNADGADLETTMEAFLEQHYMAGAI 306

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  +++    E  +L E  F +Q G +++I     G+KR  ++ A  NA  + +Q+++ +
Sbjct: 307 PPLLIVGASLETAAL-EEVFSEQAGRRIRINTHPIGDKRVWLKMAHTNAQLALSQRIAQQ 365

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            + Q  L    +   LP   +RIE +D SH MG + V   VV  +     ++YR++N+  
Sbjct: 366 ANQQSRLNALREALGLPESTERIECFDISHTMGEATVASCVVFDKGAMQSSEYRRYNI-- 423

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR VL RR+ ++   E                 PD+V +DGGKGQL  A
Sbjct: 424 TGITPGDDYAAMRDVLTRRYRKVAAGE--------------GKRPDLVFIDGGKGQLGVA 469

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538
             VL ++ + + I ++ IAKG +R  G+E+ FF ++ E + L    P L+ +Q++RDEAH
Sbjct: 470 VEVLNEVGLPD-IQLVGIAKGEERKPGLEQMFFPEREEPVSLKKDHPGLHLLQQIRDEAH 528

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR +R KA  +S L++I+GIG  R++ LL  FG +  +  +S + +A ++GIS 
Sbjct: 529 RFAITGHRAKRGKARMHSSLEDISGIGAKRRKSLLTRFGGLDGVKNASVDEIAQVDGISH 588

Query: 598 KIACKIYNHFH 608
            +A KIY   H
Sbjct: 589 ALAQKIYEELH 599


>gi|83593555|ref|YP_427307.1| excinuclease ABC subunit C [Rhodospirillum rubrum ATCC 11170]
 gi|119367827|sp|Q2RS75|UVRC_RHORT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|83576469|gb|ABC23020.1| Excinuclease ABC subunit C [Rhodospirillum rubrum ATCC 11170]
          Length = 639

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 272/613 (44%), Positives = 375/613 (61%), Gaps = 14/613 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           +   MP  PGVY+M+D  G VLYVGKA NL++R+ +Y   +    RI  MI+    +   
Sbjct: 36  ALRTMPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTMEVL 95

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLE+N+IK+LKPR+NILLRDDKSFPYI IT  H  P + K R +    G Y
Sbjct: 96  TTHTEAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKGGEY 155

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFAS  AV  T+ +LQ+TF LR+CAD+VF  R+RPCLLFQIKRC+ PC   ++   Y 
Sbjct: 156 FGPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVDRVAEADYK 215

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V EA+ FLSG +  L+  +A+ M++A    DYE A I RDR+ AL+++Q+H D     
Sbjct: 216 ALVEEARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDINLPT 275

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  + +      C+Q  FF  G+N G  +FF     +    ++L  FL QFY   P
Sbjct: 276 LGEADVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFYAGFP 335

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  ILL  +     L+E +   + G++V++ VP++G +RK+I+ AL NA  +  ++L+ 
Sbjct: 336 PPREILLLTDIPHHDLVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANAREALGRRLAE 395

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             + + +L+     F L    +R+EIYDNSHI G  AVG MVV G  GF+K  YRKFN+ 
Sbjct: 396 SSAQRTLLEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKAAYRKFNIR 455

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             D+   DD AMMR V+ RRF++  K +          +     WPD+V++DGG GQL+A
Sbjct: 456 SPDITPGDDYAMMREVMIRRFARARKED---------PDRDRGQWPDLVLIDGGLGQLNA 506

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            +  L ++ VE+ + ++ +AKGP R AG E+FFV      +L   DP+LYFIQRLRDEAH
Sbjct: 507 VREALAEIGVED-VPLVGVAKGPDRDAGRERFFVPGRPPFMLRHNDPVLYFIQRLRDEAH 565

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI +HR RR KA   SPLD + GIG  RK+ LL  FG+ K +S++    L ++EGIS 
Sbjct: 566 RFAIGSHRTRRSKAIGVSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEGISA 625

Query: 598 KIACKIYNHFHKN 610
            +A K+Y+HFH  
Sbjct: 626 ALAKKLYDHFHSE 638


>gi|91975761|ref|YP_568420.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisB5]
 gi|119367826|sp|Q13BM0|UVRC_RHOPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91682217|gb|ABE38519.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisB5]
          Length = 695

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 295/607 (48%), Positives = 395/607 (65%), Gaps = 5/607 (0%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+ML+ A  VLYVGKA N++KR+ SY     H  RI  MI+    +    T TE
Sbjct: 87  PTSPGVYRMLNAADDVLYVGKAKNVKKRLSSYARPTGHVVRIARMIAATVTVEIISTATE 146

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT  H  P + KHR + +  G YFGPFA
Sbjct: 147 TEALLLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 206

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           SV AV +TI +LQR F +RSC DS F  RTRPCLL+QI+RC+GPCTGE+    Y E V E
Sbjct: 207 SVGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCAGPCTGEVDFPGYTELVRE 266

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A  FLSG +  +K+++A  M +A+ + ++E+A ++RDRLAALS IQ+            D
Sbjct: 267 ATDFLSGRSRAVKQELAVEMEKASNELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 326

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F+++     +C++  FF  GQN G   +F + +   T  ++L+ FL QFY DKP P+ I
Sbjct: 327 VFAIHQEGGYSCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLASFLAQFYDDKPPPKLI 386

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           LLS + EE  LL  +   + G KV++  PK+GEK++++  AL NA  +  +KL+   +  
Sbjct: 387 LLSHDIEECELLANALCIKAGRKVEVAAPKRGEKKELVAHALTNAREALGRKLADTATQT 446

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
            +++       LP  P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+    + 
Sbjct: 447 RLMQGLATTLGLPRPPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEGLT 506

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD AMMR VL+RRF +L    +      K +E   P WPD+VI+DGG+GQL+AA+GVL
Sbjct: 507 PGDDYAMMREVLQRRFKRLAA-AKAEGDAAKPKEDDTPLWPDLVIIDGGRGQLNAARGVL 565

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
            +L +   +T++ +AKGP R AG E  F+ + EA+ L  RDP+LYFIQRLRDEAHRF I 
Sbjct: 566 TELGLGAEVTLLGVAKGPDRDAGRETLFMPEREAIKLEPRDPVLYFIQRLRDEAHRFVIG 625

Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           +HRK RKK      L EI GIGP RKR LL  FGT+K I R+S   L  + GIS + A +
Sbjct: 626 SHRKLRKKDIREAGLQEIPGIGPTRKRALLHHFGTLKEIERASIGDLGKVPGISAESARR 685

Query: 603 IYNHFHK 609
           I++ FH 
Sbjct: 686 IFDFFHP 692


>gi|313200794|ref|YP_004039452.1| excinuclease ABC subunit C [Methylovorus sp. MP688]
 gi|312440110|gb|ADQ84216.1| excinuclease ABC, C subunit [Methylovorus sp. MP688]
          Length = 600

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 224/611 (36%), Positives = 329/611 (53%), Gaps = 23/611 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M++    V+YVGKA +L+KR+ SY   N  + R   M+SQI  I  TV
Sbjct: 8   LKNLPNLPGVYRMINAEDAVIYVGKARDLKKRVSSYFQKNLPSPRTRMMVSQIARIETTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLE N+IK   PR+N+L RDDKS+PYI +T     P L  HR +     SYF
Sbjct: 68  TRSEAEALLLENNLIKSFMPRYNVLFRDDKSYPYITLT-GDAFPRLAFHRGTQRKGNSYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +  AV ++I  LQ+ F LR+C ++VF +R+RPCL +QI+RC+ PC   IS E Y  
Sbjct: 127 GPFPNAVAVRESIQLLQKVFRLRTCENTVFANRSRPCLQYQIQRCTAPCVNFISEEDYQR 186

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239
            V  A  FL G    + ++++  M QA  +++YE A ++RDR+ +L  +Q          
Sbjct: 187 DVSHATLFLQGREQQVMDELSHKMMQAAEEQEYEMAAVYRDRMQSLRQVQAKQFVSDFTI 246

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           +  D  +        C+       G++ G  + F K    +        FL Q Y  +  
Sbjct: 247 SDADVIACAELHGQLCVNLVMIRGGRHLGDKSHFPKNAEGADARMTAEAFLEQHYMPQNT 306

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  I++  E  ET+ LE    +Q G KVKI     G+KR  ++ A  NA  +  Q+ +  
Sbjct: 307 PPLIIVGVEGMETAELEEVLSEQAGRKVKINTNPIGDKRVWLKMAQTNAELALEQRSAAN 366

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            + Q  L    +   LP   +RIE +D SH MG + V   VV        ++YR++N+  
Sbjct: 367 ANQQARLVALREALDLPESTERIECFDISHTMGEATVASCVVFDRGAMQNSEYRRYNI-- 424

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR  L RR+ ++   E                 PD+V +DGGKGQL  A
Sbjct: 425 TGITPGDDYAAMRDALTRRYKKVAAGE--------------GLLPDLVFIDGGKGQLGVA 470

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538
             V+ ++ + + I ++ IAKG +R  G+E+ FF  +   + L    P L+ +Q++RDEAH
Sbjct: 471 VEVMHEVGLPD-IQLVGIAKGEERKPGLEQMFFPDRDTPVGLRNDHPGLHLLQQIRDEAH 529

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR KA  +S L++I GIG  R++ LL  FG +  +  +S + LA +EGIS 
Sbjct: 530 RFAITGHRARRGKARMHSSLEDIAGIGAKRRQRLLTRFGGLDGVKNASADELAQVEGISP 589

Query: 598 KIACKIYNHFH 608
            +A KIY+  H
Sbjct: 590 ALAQKIYDELH 600


>gi|86748302|ref|YP_484798.1| excinuclease ABC subunit C [Rhodopseudomonas palustris HaA2]
 gi|119367824|sp|Q2J0X3|UVRC_RHOP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|86571330|gb|ABD05887.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris HaA2]
          Length = 695

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/607 (49%), Positives = 397/607 (65%), Gaps = 5/607 (0%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+ML+ A  VLYVGKA N++KR+ SY     H  RI  MI+    +    T TE
Sbjct: 87  PTSPGVYRMLNAAHDVLYVGKAKNVKKRLSSYARPTGHVMRIARMIAATVTVEIISTSTE 146

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT  H  P + KHR + +  G YFGPFA
Sbjct: 147 TEALLLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 206

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           SV AV +TI +LQR F +RSC DS F  RTRPCLL+QI+RCSGPCTGE+    Y E V E
Sbjct: 207 SVGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCSGPCTGEVDFPGYTELVRE 266

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           AK FLSG +  +K+++A  M +A+ + ++E+A ++RDRLAALS IQ+            D
Sbjct: 267 AKDFLSGRSRAVKQELAVEMEKASNELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 326

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F++Y     +C++  FF  GQN G   +F + +   T  ++L+ FL QFY DKP P+ I
Sbjct: 327 VFAIYQEGGYSCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLASFLAQFYDDKPPPKLI 386

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           LLS + E+ +LL  +   +   KV+I+ PK+GEK++++  AL NA  +  +KL+   +  
Sbjct: 387 LLSHDIEDCALLADALCIKADRKVEISTPKRGEKKELVAHALTNAREALGRKLADTATQT 446

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
            +L+       LP  P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+    + 
Sbjct: 447 RLLQGLATTLGLPKPPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEGLT 506

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD AMMR VLERRF +L    +      K  +   P WPD+VI+DGG+GQL+AA+GVL
Sbjct: 507 PGDDYAMMREVLERRFKRLAA-AKAEGEAAKPNDDETPQWPDLVIIDGGRGQLNAARGVL 565

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
            +L ++  +T++ +AKGP R AG E  F+ + EA+ L  RDP+LYFIQRLRDEAHRF I 
Sbjct: 566 TELGLDAEVTLLGVAKGPDRDAGRETLFMPEREAIKLEPRDPVLYFIQRLRDEAHRFVIG 625

Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           +HRK RKK      L EI GIGP RKR LL  FGT+K I R+S   L  + GIS + A +
Sbjct: 626 SHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASLGDLGKVPGISAESARR 685

Query: 603 IYNHFHK 609
           I++ FH 
Sbjct: 686 IFDFFHP 692


>gi|253998716|ref|YP_003050779.1| excinuclease ABC subunit C [Methylovorus sp. SIP3-4]
 gi|253985395|gb|ACT50252.1| excinuclease ABC, C subunit [Methylovorus sp. SIP3-4]
          Length = 600

 Score =  578 bits (1490), Expect = e-163,   Method: Composition-based stats.
 Identities = 224/611 (36%), Positives = 329/611 (53%), Gaps = 23/611 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M++    V+YVGKA +L+KR+ SY   N  + R   M+SQI  I  TV
Sbjct: 8   LKNLPNLPGVYRMINAEDAVIYVGKARDLKKRVSSYFQKNLPSPRTRMMVSQIERIETTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLE N+IK   PR+N+L RDDKS+PYI +T     P L  HR +     SYF
Sbjct: 68  TRSEAEALLLENNLIKSFMPRYNVLFRDDKSYPYITLT-GDAFPRLAFHRGTQRKGNSYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +  AV ++I  LQ+ F LR+C ++VF +R+RPCL +QI+RC+ PC   IS E Y  
Sbjct: 127 GPFPNAVAVRESIQLLQKVFRLRTCENTVFANRSRPCLQYQIQRCTAPCVNFISEEDYRR 186

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239
            V  A  FL G    + ++++  M QA  +++YE A ++RDR+ +L  +Q          
Sbjct: 187 DVSHATLFLQGREQQVMDELSHKMMQAAEEQEYEMAAVYRDRMQSLRQVQAKQFVSDFTI 246

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           +  D  +        C+       G++ G  + F K    +        FL Q Y  +  
Sbjct: 247 SDADVIACAELHGQLCVNLVMIRGGRHLGDKSHFPKNAEGADARMTAEAFLEQHYMPQNT 306

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  I++  E  ET+ LE    +Q G KVKI     G+KR  ++ A  NA  +  Q+ +  
Sbjct: 307 PPLIIVGVEGMETAELEEVLSEQAGRKVKINTNPIGDKRVWLKMAQTNAELALEQRSAAN 366

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            + Q  L    +   LP   +RIE +D SH MG + V   VV        ++YR++N+  
Sbjct: 367 ANQQARLVALREALDLPETTERIECFDISHTMGEATVASCVVFDRGAMQNSEYRRYNI-- 424

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR  L RR+ ++   E                 PD+V +DGGKGQL  A
Sbjct: 425 TGITPGDDYAAMRDALTRRYKKVAAGE--------------GLLPDLVFIDGGKGQLGVA 470

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538
             V+ ++ + + I ++ IAKG +R  G+E+ FF  +   + L    P L+ +Q++RDEAH
Sbjct: 471 VEVMHEVGLPD-IQLVGIAKGEERKPGLEQMFFPDRDTPVGLRNDHPGLHLLQQIRDEAH 529

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR KA  +S L++I GIG  R++ LL  FG +  +  +S + LA +EGIS 
Sbjct: 530 RFAITGHRARRGKARMHSSLEDIAGIGAKRRQRLLTRFGGLDGVKNASADELAQVEGISP 589

Query: 598 KIACKIYNHFH 608
            +A KIY+  H
Sbjct: 590 ALAQKIYDELH 600


>gi|49475349|ref|YP_033390.1| excinuclease ABC subunit C [Bartonella henselae str. Houston-1]
 gi|81648054|sp|Q6G424|UVRC_BARHE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|49238155|emb|CAF27363.1| Excinuclease ABC subunit c [Bartonella henselae str. Houston-1]
          Length = 661

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 316/613 (51%), Positives = 417/613 (68%), Gaps = 7/613 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+M+D  G+VLYVGKA NL+KR+ +Y     H +RIT MI   +++ F VT
Sbjct: 48  KHLPHKPGVYRMVDENGKVLYVGKARNLKKRVSNYTREQGHNNRITRMIRATSHMEFVVT 107

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALLLEAN+IKRL PRFN+LLRDDKSFPYI+ITD H+ PALYKHR + T +  YFG
Sbjct: 108 HTEIEALLLEANLIKRLHPRFNVLLRDDKSFPYIIITDDHRAPALYKHRGARTRKAHYFG 167

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN LQR F LR+C DSV  +RTRPCLL+QIKRCS PCT EIS   Y E 
Sbjct: 168 PFASSSAVTQTINVLQRAFLLRTCTDSVLENRTRPCLLYQIKRCSAPCTHEISDRDYREL 227

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V  AK FLSG + ++K  + + M++A    D+E A  +RDRL+ALSHIQ+H         
Sbjct: 228 VKGAKSFLSGKSQSIKNDMVQAMHKAAKNFDFEQAAAYRDRLSALSHIQSHQGINPQTIE 287

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++   + ++CIQ  FF  GQN G   +F K D   ++++IL+ FL QFY DKP P
Sbjct: 288 EADVFAIAQKEGISCIQVFFFRMGQNWGNRAYFPKADPSFSSSEILASFLSQFYDDKPLP 347

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLSE  E+ +LL  +F  +   K+ +++PKQGE++ ++  A INAH +   KL+   
Sbjct: 348 KLILLSESIEDKTLLAEAFSLKANRKISLSLPKQGERKTLVNYAYINAHETLGHKLAETA 407

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +H  + +   + F LPH P RIEIYDNSHIMG +AVG M+V G+NGF+KNQYRKFN+   
Sbjct: 408 THTKLFQGIAEIFQLPHTPCRIEIYDNSHIMGTNAVGAMIVAGKNGFIKNQYRKFNIRST 467

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFH---PKKQEYSFPSWPDVVILDGGKGQLS 477
           D+   DD  MM+ V++RRFS+LIK     +       K + SFP WPD++++DGGKGQ++
Sbjct: 468 DITPGDDFGMMKEVIKRRFSRLIKEHGLPHESKNIQSKDDASFPIWPDLILIDGGKGQIN 527

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           +   +L +L ++N +T++ IAKG  R AG E+FF+K      L   DPILYF+QRLRDEA
Sbjct: 528 SVHTILSELGLDNFMTVVGIAKGADRRAGRERFFIKGKTPFTLPPCDPILYFLQRLRDEA 587

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI THR +RKK    +PLDEI  IGP RKR LL  FG+ K I+ +S E L  + GIS
Sbjct: 588 HRFAIGTHRAKRKKETLKNPLDEIENIGPTRKRALLHHFGSAKAIASASLEDLTKVIGIS 647

Query: 597 KKIACKIYNHFHK 609
             IA KIYNHF++
Sbjct: 648 TTIAQKIYNHFNE 660


>gi|304391992|ref|ZP_07373934.1| excinuclease ABC subunit C [Ahrensia sp. R2A130]
 gi|303296221|gb|EFL90579.1| excinuclease ABC subunit C [Ahrensia sp. R2A130]
          Length = 659

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 286/610 (46%), Positives = 402/610 (65%), Gaps = 5/610 (0%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVT 63
           ++P+ PGVY+M++ AG VLYVGKA NL+ R+ SY     H  +R   MI++  N+ F  T
Sbjct: 49  RLPKKPGVYRMMNRAGDVLYVGKAKNLKNRVSSYARGVGHGGNRTARMIAETANMEFVTT 108

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PR+N+L+RDDKSFPYIL+T  H  P L+K R + T +G Y+G
Sbjct: 109 NTETEALLLEANLIKRLRPRYNVLIRDDKSFPYILLTSDHDAPGLFKFRGARTRKGDYYG 168

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFA+  +V  TI +LQR F LR+C DS +++RTRPCLL QIKRC+GPCTGE+S + Y + 
Sbjct: 169 PFANAGSVNSTITALQRIFQLRTCTDSFYQNRTRPCLLHQIKRCAGPCTGEVSKDDYADL 228

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V + K FLSG +  +K++ +  M  A+ + D+E A I+RDRLAALSH+  H         
Sbjct: 229 VKQTKDFLSGRSQEIKQRFSTRMQTASDEMDFELAAIYRDRLAALSHVSGHQGINPQHLK 288

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++  +   CIQ  FF  GQN G   +F + D     A++L  F+ QFY DKP P
Sbjct: 289 EADIFAIHEEQGHFCIQVFFFRTGQNWGNRAYFPRADKTFEPAEVLEAFVSQFYDDKPVP 348

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +L S E  +  LL  +   + G+KV ++ P++GEKR+++EQ   NA  +  +KLS   
Sbjct: 349 RMVLTSHELAQEELLAEALSAKAGHKVVVSKPQRGEKRELMEQVARNAREALGRKLSESA 408

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   +L    + F L   P+RIE+YDNSHIMG +AVG M+V G +GF KNQYRKFN+   
Sbjct: 409 TQNKLLAGLQEVFQLDRPPRRIEVYDNSHIMGTNAVGGMIVAGPDGFAKNQYRKFNIKDE 468

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           ++   DD  MM+ V  RRF++L K   N +   +  E + P+WPD+V++DGG GQLSA +
Sbjct: 469 EITPGDDFGMMKEVFTRRFARLKKENGNESPKDESAEDTMPAWPDLVLIDGGAGQLSACR 528

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            ++K+L++E+++T++ +AKG  R AG E+F     +   L +RDP LYFIQRLRDEAHRF
Sbjct: 529 EIMKELDLEDKVTLVGVAKGVDRDAGRERFHQTGKKDFTLPLRDPTLYFIQRLRDEAHRF 588

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR +RKK    +PLDEI GIGP RKR +L  FG+ K   R++ E L  ++G+S+ +
Sbjct: 589 AIGTHRAKRKKDQLKNPLDEIEGIGPSRKRAILHHFGSAKAAGRAAVEDLMEVDGVSENM 648

Query: 600 ACKIYNHFHK 609
           A +I+ HF K
Sbjct: 649 ARRIHAHFQK 658


>gi|319408328|emb|CBI81981.1| excinuclease ABC subunit C [Bartonella schoenbuchensis R1]
          Length = 661

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 312/613 (50%), Positives = 419/613 (68%), Gaps = 7/613 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+M +  G VLYVGKA NL+KR+ SY     H +RI  MIS   ++ F VT
Sbjct: 48  KHLPHKPGVYRMFNENGDVLYVGKARNLKKRVSSYTREQGHNNRIIRMISATYHMEFVVT 107

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL PRFN+LLRDDKSFPYI+ITD H+ PALYKHR + T +  YFG
Sbjct: 108 HTETEALLLEANLIKRLHPRFNVLLRDDKSFPYIIITDDHRAPALYKHRGARTRKAHYFG 167

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+CADSVF +RTRPCLL+QIKRCS PCT EI+   Y++ 
Sbjct: 168 PFASSGAVAQTINALQRAFLLRTCADSVFNNRTRPCLLYQIKRCSAPCTHEINDSDYIKL 227

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V +AK FLSG + ++K+ +A+ M++A+   D+E AI +RDRL+ALSHIQ+H         
Sbjct: 228 VQKAKAFLSGKSQSVKKDMAQAMHKASENLDFEQAIAYRDRLSALSHIQSHQGINPQTVK 287

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++     + CIQ  FF  GQN G   +F K DS  +NA+IL  F+ QFY DKP P
Sbjct: 288 EADVFAIAQQGGMTCIQVFFFRMGQNWGNRAYFPKADSSFSNAEILMSFITQFYDDKPIP 347

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLSE+ EE +LL  +   +  +K+ +++P++GE++ ++  A  NA+ +  +KL+   
Sbjct: 348 KLILLSEKIEEEALLTEALNLKANHKISLSLPQKGERKSLVNHAYTNAYEALGRKLAETA 407

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +H  +L+   + F LPH P+RIEIYDNSHIMG +AVG MVV  + GF+KNQYRKFN+   
Sbjct: 408 THIKLLQGVAETFQLPHTPRRIEIYDNSHIMGTNAVGAMVVFDQTGFIKNQYRKFNIRST 467

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY---SFPSWPDVVILDGGKGQLS 477
           D+   DD  MM+ V+ERRFS+LIK     N +   +     SFP WPD++++DGG+GQ++
Sbjct: 468 DITPGDDFGMMKEVIERRFSRLIKEHGLPNRNKDTKNDSDNSFPIWPDLILIDGGEGQIN 527

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
             + +L +L +++ +T I IAKG  R+AG E+FF+K      L   DPILYF+QRLRDEA
Sbjct: 528 VVRTLLSQLGLDDFVTAIGIAKGANRNAGRERFFIKGKPPFTLPSHDPILYFLQRLRDEA 587

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI THR +RKK    + LDEI  IGP RK  LL  FG+ K I+ +S E L  + GIS
Sbjct: 588 HRFAIETHRAKRKKETFKNLLDEIENIGPTRKSALLNHFGSTKAIANASVEDLNKVAGIS 647

Query: 597 KKIACKIYNHFHK 609
             +A KI+NHF++
Sbjct: 648 TAMAQKIHNHFNE 660


>gi|154252723|ref|YP_001413547.1| excinuclease ABC subunit C [Parvibaculum lavamentivorans DS-1]
 gi|154156673|gb|ABS63890.1| excinuclease ABC, C subunit [Parvibaculum lavamentivorans DS-1]
          Length = 644

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 284/618 (45%), Positives = 398/618 (64%), Gaps = 13/618 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PGVY+M    G +LYVGKA +L+KR+ SY     H++RI  MI+    + F 
Sbjct: 36  KVKLLPDSPGVYRMYGTGGELLYVGKARSLKKRVASYTKLAGHSNRIARMIASTIQMEFI 95

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE +ALLLEAN+IKRLKPR+N+L+RDDKSFPYIL+T  H  P + KHR   +  G Y
Sbjct: 96  STATETDALLLEANLIKRLKPRYNVLMRDDKSFPYILLTGDHDFPQVVKHRGGRSRPGDY 155

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFAS  AV  T+N+LQ+ F LRSC+DSVF  RTRPCLLFQIKRCS PCTGEI  E Y 
Sbjct: 156 YGPFASAGAVTATLNALQKAFLLRSCSDSVFESRTRPCLLFQIKRCSAPCTGEIDRESYA 215

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             + EA+ FL G +   ++++   M +A+   D+E A I+RDR+ AL+ IQ H       
Sbjct: 216 VLLAEARDFLRGRSRKTQQQLVELMEKASADLDFEQASIYRDRIRALTQIQQHQGINPQT 275

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ +      C+Q  FF  GQN G   +F + D E +  ++L  FL QFY D+P
Sbjct: 276 VTEADVFAAWTEGGQTCVQVFFFRAGQNWGNRAYFPRHDKELSTEEVLDAFLAQFYEDRP 335

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  +LLS +    +LL  +   + G KV + +PK+GEKR++++ AL+NA  +  ++L+ 
Sbjct: 336 PPRLVLLSHDVPGRALLAEALTIRAGRKVAVGLPKRGEKRQLVDHALLNAREALGRRLAE 395

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             S + +L+   + F L   P RIE+YDNSHI G  AVG M+V G +GF+KNQYRKFN+ 
Sbjct: 396 SSSQRKLLEGVAEAFGLEQPPARIEVYDNSHISGSQAVGGMIVAGPDGFMKNQYRKFNIK 455

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            +D++  DD AMMR VL RRF++L+K  E              +WPD++++DGG GQL  
Sbjct: 456 GDDIEPGDDYAMMRQVLTRRFTRLLKESEGKPADE--------TWPDLLLIDGGAGQLKV 507

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  VL +L ++N +T + +AKGP+R AG E+FF+      ++  R+P+LY++QRLRDEAH
Sbjct: 508 ALEVLAELGIDN-VTAVGVAKGPERDAGRERFFMAGRPDFMMEPRNPVLYYLQRLRDEAH 566

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           R+AI +HR RR KA   +PLD++ G+GP RKR LLQ FG+ + ++R+    L S+EGIS 
Sbjct: 567 RYAIGSHRARRSKAIGVNPLDDVPGVGPGRKRALLQHFGSARAVARAGLADLESVEGISA 626

Query: 598 KIACKIYNHFHKNTSHTP 615
           K+A  +Y+HFH N    P
Sbjct: 627 KVARAVYDHFHGNPDSAP 644


>gi|126734014|ref|ZP_01749761.1| excinuclease ABC subunit C [Roseobacter sp. CCS2]
 gi|126716880|gb|EBA13744.1| excinuclease ABC subunit C [Roseobacter sp. CCS2]
          Length = 622

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 260/610 (42%), Positives = 381/610 (62%), Gaps = 14/610 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     H+ RIT MI +  ++ F  T 
Sbjct: 22  TLDSSPGVYRMLDADSRVLYVGKARNLKARVSNYARPGQHSPRITRMIRETASMMFLTTR 81

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T  H  P + KHR +   QG+Y+GP
Sbjct: 82  TETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVTKDHAFPMIKKHRGAKKQQGNYYGP 141

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FA   AV +T+N LQR F LR+C+DS F  RTRPCL +QIKRCSGPC G I+   Y   V
Sbjct: 142 FAGAGAVNRTLNQLQRVFLLRNCSDSDFETRTRPCLQYQIKRCSGPCCGLIAEGDYEASV 201

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            +A+KFL G    ++E +A+ M  A+   ++E A   RDR+ AL+ +Q+           
Sbjct: 202 RDAEKFLQGRTKGIQEALAKQMQDASEAMEFERAAALRDRIKALTQVQSAQGINPQNTPE 261

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +L+ +   AC+Q  F    QN G   ++ +   +   ++++  F+ QFY+++  P 
Sbjct: 262 ADVIALHRDGGQACVQVFFIRANQNWGNHDYYPRVSGDEDPSEVMEAFVGQFYSNREPPR 321

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++LS   +   L+  +  ++   KV+I VP++GEK ++++ AL NA  S  +K+S   +
Sbjct: 322 MLILSHGLDSDDLMADALAEKAERKVEIIVPQRGEKAELVQNALRNARESLARKMSETAT 381

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +LK   + F +   P+RIE+YDNSHI G  AVG MVV G +GF KNQYRKFN+  +D
Sbjct: 382 QARLLKGVAEAFEMDRAPQRIEVYDNSHIQGAHAVGAMVVAGPDGFDKNQYRKFNIRGDD 441

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD  MM+ VL RRF +L+K +          E +  +WPD++++DGG+GQ+SA + 
Sbjct: 442 LTPGDDFGMMKEVLTRRFQRLLKED---------PERTLGTWPDLLLIDGGQGQVSAVRE 492

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           ++  L V + I ++ +AKG  R AG E+F       + L   DP+LYFIQR+RDE HRFA
Sbjct: 493 IMNDLGVSD-IPMVGVAKGEDRDAGKEEFHRTGKPVMALRHNDPVLYFIQRMRDEVHRFA 551

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I THR +R KA   +PLD++ G+G  RKR LL  FG+ K ++R++   L +++G+S K+A
Sbjct: 552 IGTHRAKRSKAIGATPLDDVPGVGATRKRALLAHFGSAKAVARANLADLKAVDGVSAKLA 611

Query: 601 CKIYNHFHKN 610
             +Y++FH+N
Sbjct: 612 QTVYDYFHEN 621


>gi|260431637|ref|ZP_05785608.1| excinuclease ABC, C subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415465|gb|EEX08724.1| excinuclease ABC, C subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 626

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 266/609 (43%), Positives = 381/609 (62%), Gaps = 15/609 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     H+ RI  MI+   ++ F  T
Sbjct: 26  KTLDNSPGVYRMLDADSRVLYVGKARNLRARVSNYTRP-GHSPRIERMIASTASMMFLTT 84

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+   H  P + KHR +   +G+YFG
Sbjct: 85  RTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHPFPQIKKHRGAKKEKGAYFG 144

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +T+N LQ+ F LR+C+DS+F  RTRPCLL+QIKRCSGPC G IS   Y E 
Sbjct: 145 PFASAGAVNRTLNQLQKAFLLRNCSDSMFDSRTRPCLLYQIKRCSGPCVGMISQADYAES 204

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240
           V +A++FLSG +  ++E++A  M +A+   ++E A   RDR+ AL+ +Q           
Sbjct: 205 VRDAERFLSGRSTRIQEELAAQMQEASDAMEFERAAALRDRIRALTQVQTAQGINPRGVA 264

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   LY +   AC+Q  F    QN G   F+ +   + + A+++  FL QFY +K  P
Sbjct: 265 EADVIGLYMDSGQACVQVFFIRANQNWGNRDFYPRVGPDVSPAEVMEAFLGQFYDNKEPP 324

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ++LS+  E   L++ +  ++ G KV+I VP++GEK +++  AL NA  +  +++S   
Sbjct: 325 RQLILSDAIENADLMQQALSEKAGRKVEILVPQRGEKLELVSGALRNAREALARRMSESA 384

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   +L+   + F L   P RIE+YDNSHI G +AVG M+V G  GF+KN YRKFN+  +
Sbjct: 385 TQAKLLRGLAEAFDLDAPPNRIEVYDNSHIQGTNAVGAMIVAGPEGFMKNAYRKFNIRGD 444

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MM+ VL RRF++L+K +          + +   WPD++++DGG GQ+SA  
Sbjct: 445 DLTPGDDFGMMKEVLTRRFTRLLKED---------PDRNKGLWPDLLLIDGGAGQVSAVH 495

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +++   VE+ I ++ +AKG  R  G E+F         L   DP+LYFIQRLRDEAHRF
Sbjct: 496 EIMQAHGVED-IPMVGVAKGVDRDHGKEEFHRIGQRPFALKRNDPVLYFIQRLRDEAHRF 554

Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR +R KA   +PLDEI G+G  RKR LL  FG+ K +SR++   L +++GIS  +
Sbjct: 555 AIGTHRAKRAKAMGATPLDEIPGVGAARKRALLAHFGSAKAVSRANLADLKAVDGISAGL 614

Query: 600 ACKIYNHFH 608
           A K+Y+ FH
Sbjct: 615 AQKVYDFFH 623


>gi|299134247|ref|ZP_07027440.1| excinuclease ABC, C subunit [Afipia sp. 1NLS2]
 gi|298590994|gb|EFI51196.1| excinuclease ABC, C subunit [Afipia sp. 1NLS2]
          Length = 683

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 293/612 (47%), Positives = 391/612 (63%), Gaps = 9/612 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + +  P  PGVY+ML+ +G VLYVGKA N++KR+ SY     H  RI  MI+   N+   
Sbjct: 74  AVKLAPTSPGVYRMLNESGDVLYVGKAKNVKKRLSSYARPTGHVVRIARMIAMTVNVEIV 133

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT  H  P L KHR + T  G Y
Sbjct: 134 STETETEALLLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQLVKHRGAQTRPGRY 193

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFASV AV +T+ +LQR F +RSC DS F  RTRPCLLFQIKRC+GPCTGEI    Y 
Sbjct: 194 FGPFASVGAVNRTLTALQRAFLIRSCTDSFFEGRTRPCLLFQIKRCAGPCTGEIDFPAYT 253

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + V EA  FLSG +  +KE++A  M +A+ + ++E A ++RDRLAALS +Q         
Sbjct: 254 QLVREATDFLSGRSRAVKEQLAAEMEKASAELEFERAALYRDRLAALSAVQAQQGINPRT 313

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+++     +C++  FF  GQN G   +F + D   T  ++L  FL QFY  KP
Sbjct: 314 VEEADVFAIHQEGGYSCVEVFFFRTGQNWGNRAYFPRADKSLTAEEVLGSFLSQFYDGKP 373

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ +LLS + EE  LL  +   + G+KV+++ P++GEK++++  AL NA  +  +KL+ 
Sbjct: 374 PPKLVLLSHKIEEGELLASALSVKAGFKVEVSTPQRGEKKELVNHALTNAREALGRKLAD 433

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +   +L        LP  P+RIEIYDNSHI G +AVG MVV G  GF+KNQYRKFN+ 
Sbjct: 434 TATQTRLLDSLVSALQLPQPPRRIEIYDNSHIQGTNAVGAMVVAGPEGFMKNQYRKFNIR 493

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             ++   DD  MMR VL+RRF +L+  E       + ++   P WPD+VI+DGG GQL+A
Sbjct: 494 SENLTPGDDYGMMREVLQRRFKRLLSAE----AGAQAKDDDVPQWPDLVIIDGGLGQLNA 549

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            + +  +L V   ++++S+AKGP R AG E  F+    A+ L  RDP+LYFIQRLRDEAH
Sbjct: 550 VRQIFDELGVTG-VSLMSVAKGPDRDAGRETLFLPDRPAIKLEPRDPVLYFIQRLRDEAH 608

Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RF I +HRK RKK      L EI GIGP RKR LL  FGT+K I R+S   L  + G+S 
Sbjct: 609 RFVIGSHRKLRKKDIREAGLQEIPGIGPARKRALLHHFGTLKEIERASLADLGKVPGVSA 668

Query: 598 KIACKIYNHFHK 609
           + A +I++ FH 
Sbjct: 669 ESARRIHDFFHP 680


>gi|121996832|ref|YP_001001619.1| excinuclease ABC subunit C [Halorhodospira halophila SL1]
 gi|121588237|gb|ABM60817.1| Excinuclease ABC subunit C [Halorhodospira halophila SL1]
          Length = 613

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 223/608 (36%), Positives = 344/608 (56%), Gaps = 22/608 (3%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PGVY+ML   G ++YVGKA NL++R+ SY   +  T +   ++  I +++ TVT T
Sbjct: 22  LPERPGVYRMLSAEGTIIYVGKARNLRRRVSSYFTPSRKTPKTERLVQLIADVQITVTHT 81

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EAL+LE N+IK  +PR+N+LLRDDKS+PYI ++   + P L  HR +    G +FGP+
Sbjct: 82  EAEALILENNLIKEHRPRYNVLLRDDKSYPYIYLSSHQQFPRLGYHRGARQGAGRFFGPY 141

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            + +AV +T+  LQ+ F +R C D+ FR+R+RPCL +QI+RC+ PC G IS E Y   V 
Sbjct: 142 PNSNAVRETLGYLQKVFPIRQCRDTFFRNRSRPCLQYQIRRCTAPCVGYISEEDYRRDVR 201

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF 245
           + + FL G +  +  ++ R M +A    ++E A   RDR+A L HIQ       +R D  
Sbjct: 202 DVEFFLEGRSGEVIAELVRRMEEAAENLEFEQAARLRDRIANLRHIQQRQYVAQDRDDNM 261

Query: 246 ---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
              +     + AC+Q  F   G + G  ++F  T S S  + IL+ FL Q Y  +  P  
Sbjct: 262 DIVACVAEGDTACVQVFFIRGGSSLGNQSYFPNTPSGSRESDILASFLAQHYLGRVAPPE 321

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ++++    E  LLE +     G  V I    +G++R+ +E A  NA  + + + ++  S 
Sbjct: 322 VVINRPVREQRLLEQALRTASGGTVAIRHRVRGDRRRWVEMAEENARYALSARSASTASQ 381

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           Q       +       P+RIE +D SH  G + V   VV    G VK+ YR+FN+   +V
Sbjct: 382 QRRYSALAEVIDSDAPPERIECFDISHTAGEATVASCVVFNREGPVKSDYRRFNIR--NV 439

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A M   L RR+ ++   E                 PD++++DGGKGQ++ A+ V
Sbjct: 440 TAGDDYAAMHQALTRRYRRVKSGE--------------APLPDLLLIDGGKGQVAQARDV 485

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFA 541
           L +L ++  + ++ IAKGP+R  G E   +  GE  + L    P L+ +Q++RDEAHRFA
Sbjct: 486 LDELGIDG-VALMGIAKGPERRPGEETLLLDDGEREIELPADSPALHLLQQVRDEAHRFA 544

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           ++ HR+RR KA   S L+EI G+GP R++ LL+ FG ++ I ++  E LA + GI + +A
Sbjct: 545 VSGHRQRRGKARRESILEEIPGLGPKRRQSLLKHFGGIQGIRQAGIEDLARVPGIHRSLA 604

Query: 601 CKIYNHFH 608
            +IY+ FH
Sbjct: 605 QRIYDTFH 612


>gi|39934246|ref|NP_946522.1| excinuclease ABC subunit C [Rhodopseudomonas palustris CGA009]
 gi|81563723|sp|Q6NAL3|UVRC_RHOPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|39648094|emb|CAE26614.1| putative excinuclease ABC subunit C [Rhodopseudomonas palustris
           CGA009]
          Length = 704

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 290/610 (47%), Positives = 392/610 (64%), Gaps = 8/610 (1%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+ML+    VLYVGKA N++KR+ SY        RI  MI+    +    T TE
Sbjct: 91  PTSPGVYRMLNAERDVLYVGKAKNVKKRLASYARPTGQVLRIARMIALTVEVEVISTTTE 150

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT  H  P + KHR + +  G YFGPFA
Sbjct: 151 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITSDHWAPQILKHRGAQSRPGRYFGPFA 210

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  AV +TI +LQR F +RSC DS F  RTRPCLL+QI+RC+GPCTGE+    Y E V E
Sbjct: 211 SAGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCAGPCTGEVDFPGYSELVRE 270

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A  FLSG +  +KE +A  M +A+ + ++E+A ++RDRLAALS IQ+            D
Sbjct: 271 ATDFLSGRSRAVKELLAAEMEKASGELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 330

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F+++ +   +C++  FF  GQN G   +F + +   T A++L  F+ QFY DKP P+ I
Sbjct: 331 VFAIHQDGGYSCVEVFFFRTGQNWGNRAYFPRAEKSFTPAEVLGAFVAQFYDDKPPPKLI 390

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           LLS E EE  LL  +   + G+KV+ITVPK+GEK++++  A  NA  +  +KL+   +  
Sbjct: 391 LLSHEIEEAELLADALCVKAGHKVEITVPKRGEKKELVAHAQTNAREALGRKLADTATQA 450

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
            +L++      LP  P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+    + 
Sbjct: 451 RLLENLATTLGLPKTPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEGLT 510

Query: 424 TQDDCAMMRMVLERRFSQLI----KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             DD AMMR VL+RRF +L+    + +       K ++   P WPD+VI+DGG+GQL+AA
Sbjct: 511 PGDDYAMMREVLQRRFKRLVTSQAEGDGEAAAKAKPKDDDVPQWPDLVIIDGGRGQLNAA 570

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           +  L  + + +++T++ +AKGP R AG E  F+   +A+ L  RDP+LYFIQRLRDEAHR
Sbjct: 571 REALSGIGLTDQVTLLGVAKGPDRDAGRETLFLPDRDAIKLEPRDPVLYFIQRLRDEAHR 630

Query: 540 FAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           F I +HR  RKK      L EI GIGP RKR LL  FGT+K I R+S   L  + GIS +
Sbjct: 631 FVIGSHRTLRKKDIREAGLQEIPGIGPTRKRALLLHFGTLKEIERASIADLGKVPGISAE 690

Query: 599 IACKIYNHFH 608
            A +I+  FH
Sbjct: 691 SAKRIFEFFH 700


>gi|103486571|ref|YP_616132.1| excinuclease ABC subunit C [Sphingopyxis alaskensis RB2256]
 gi|119367841|sp|Q1GU73|UVRC_SPHAL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|98976648|gb|ABF52799.1| Excinuclease ABC subunit C [Sphingopyxis alaskensis RB2256]
          Length = 644

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 255/609 (41%), Positives = 371/609 (60%), Gaps = 14/609 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+MLD  G VLYVGKA  L+ R+ SY        R+  M++Q   +    T 
Sbjct: 44  KLPARPGVYRMLDARGDVLYVGKARALRNRVTSYTQVARLPQRLQRMVAQTRAMEIVTTT 103

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLEA +IKR +P +N+LLRDDKSFP+IL+   H  P + KHR +   +G Y+GP
Sbjct: 104 SEAEALLLEAQLIKRYRPPYNVLLRDDKSFPFILLRTDHDFPRVQKHRGARRAKGRYYGP 163

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  +V +T+N+LQ+TF LRSC DS F +R+RPCLL+QI+RCS PC   IS E Y   V
Sbjct: 164 FASAGSVARTLNALQKTFLLRSCTDSFFANRSRPCLLYQIRRCSAPCVDRISKEDYAGLV 223

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
            +A+ FL G +  +++++   M +A    D+E A + RDRL AL+ IQ       +    
Sbjct: 224 SDAQDFLEGRSTAVQKRLGEAMTRAADAMDFEQAAVLRDRLKALTFIQGSQSVHADGLGD 283

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F+L       CI   F   GQN G  +FF    +     ++++ FL QFY   P P+
Sbjct: 284 ADVFALAAKGGQLCIAGFFIRGGQNWGHRSFFPAHVAGVPETEVMASFLMQFYEGVPPPK 343

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            IL+  E +E++LL  +  +  G KV+I+VP++G ++++++QA+ NA     ++L+   S
Sbjct: 344 LILVDREPDESALLAEALGETAGRKVEISVPQRGNRKRLLDQAVRNAGEELDRRLAESSS 403

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              + ++    F L + P+RIEIYDNSHI G SA+G MVV G  G++K  YRKFN+   +
Sbjct: 404 QAKLGRELADLFDLENPPQRIEIYDNSHIQGTSALGAMVVAGPEGWMKGAYRKFNIKRAE 463

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
            +  DD AMMR V +RRF++ I+ +          E +   WPD+V++DGGKGQ+SA   
Sbjct: 464 TQPGDDFAMMREVFQRRFARAIEED---------PERTKGEWPDLVLIDGGKGQVSAVAA 514

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           V  +L +++ +  + +AKGP R+AG E F++  G    L   + +L++IQRLRDEAHRFA
Sbjct: 515 VFSELGIDD-LPFVGVAKGPDRNAGRETFYLPDGREFTLPTNNAVLFYIQRLRDEAHRFA 573

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I  HR +R KA   SPLDE+ GIGP RK+ LL  FGT + I  +S E L    G+S  +A
Sbjct: 574 IGAHRAKRAKAMGSSPLDEVPGIGPARKKALLMHFGTTRAIKGASLEDLQKAPGVSAAVA 633

Query: 601 CKIYNHFHK 609
             +Y+ ++ 
Sbjct: 634 QAVYDFYNP 642


>gi|192289772|ref|YP_001990377.1| excinuclease ABC subunit C [Rhodopseudomonas palustris TIE-1]
 gi|192283521|gb|ACE99901.1| excinuclease ABC, C subunit [Rhodopseudomonas palustris TIE-1]
          Length = 704

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 290/610 (47%), Positives = 392/610 (64%), Gaps = 8/610 (1%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+ML+    VLYVGKA N++KR+ SY        RI  MI+    +    T TE
Sbjct: 91  PTSPGVYRMLNAERDVLYVGKAKNVKKRLASYARPTGQVLRIARMIALTVEVEVISTTTE 150

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT  H  P + KHR + +  G YFGPFA
Sbjct: 151 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 210

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  AV +TI +LQR F +RSC DS F  RTRPCLL+QI+RC+GPCTGE+    Y E V E
Sbjct: 211 SAGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCAGPCTGEVDFPGYSELVRE 270

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A  FLSG +  +KE +A  M +A+ + ++E+A ++RDRLAALS IQ+            D
Sbjct: 271 ATDFLSGRSRAVKELLAAEMEKASGELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 330

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F+++ +   +C++  FF  GQN G   +F + +   T A++L  F+ QFY DKP P+ I
Sbjct: 331 VFAIHQDGGYSCVEVFFFRTGQNWGNRAYFPRAEKSFTPAEVLGAFVAQFYDDKPPPKLI 390

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           LLS E EE  LL  +   + G+KV+ITVPK+GEK++++  A  NA  +  +KL+   +  
Sbjct: 391 LLSHEIEEAELLADALCVKAGHKVEITVPKRGEKKELVAHAQTNAREALGRKLADTATQA 450

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
            +L++      LP  P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+    + 
Sbjct: 451 RLLENLATTLGLPKTPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEGLT 510

Query: 424 TQDDCAMMRMVLERRFSQLI----KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             DD AMMR VL+RRF +L+    + +       K ++   P WPD+VI+DGG+GQL+AA
Sbjct: 511 PGDDYAMMREVLQRRFKRLVTSQAEGDGEAAAKAKPKDDDVPQWPDLVIIDGGRGQLNAA 570

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           +  L  + + +++T++ +AKGP R AG E  F+   +A+ L  RDP+LYFIQRLRDEAHR
Sbjct: 571 REALSGIGLTDQVTLLGVAKGPDRDAGRETLFLPDRDAIKLEPRDPVLYFIQRLRDEAHR 630

Query: 540 FAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           F I +HR  RKK      L EI GIGP RKR LL  FGT+K I R+S   L  + GIS +
Sbjct: 631 FVIGSHRTLRKKDIREAGLQEIPGIGPTRKRALLLHFGTLKEIERASIADLGKVPGISAE 690

Query: 599 IACKIYNHFH 608
            A +I+  FH
Sbjct: 691 SAKRIFEFFH 700


>gi|114569323|ref|YP_756003.1| excinuclease ABC subunit C [Maricaulis maris MCS10]
 gi|119367665|sp|Q0ARM2|UVRC_MARMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|114339785|gb|ABI65065.1| excinuclease ABC, C subunit [Maricaulis maris MCS10]
          Length = 633

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 274/611 (44%), Positives = 387/611 (63%), Gaps = 17/611 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M    G VLYVGKA NL+ R+ +Y +   H++RI  MI     + F VT 
Sbjct: 34  NLPPKPGVYRMFGEDGAVLYVGKARNLKNRVSNYANGRGHSNRIALMIGLTRKMEFVVTQ 93

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IK LKPRFNILLRDDKSFPYILI   H    L KHR +   +G YFGP
Sbjct: 94  TETEALLLEANLIKSLKPRFNILLRDDKSFPYILIRKDHPAAQLTKHRGARKAKGDYFGP 153

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FASV AV +T+N+LQ+ F +R+C+DSV+  R+R C+L QIKRC+GPC   I    Y E V
Sbjct: 154 FASVGAVNQTLNTLQKAFLVRTCSDSVYEGRSRACMLHQIKRCAGPCVDLIDPAAYDELV 213

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
            +A  FL G ++ L+E +   M QA+   D+E+A   RDR+ A++ +        +    
Sbjct: 214 GQATDFLRGRSNALREDLQTRMAQASEAMDFETAAKLRDRIRAIAAVTTDQGINPDGVEE 273

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +++ +   +C+Q  FF  GQN G  +FF + D E+  A++L+ F+ QFY DKP P 
Sbjct: 274 ADVVAVHSDGGKSCVQVFFFRAGQNWGNQSFFPRHDMEAEPAEVLAAFIAQFYDDKPAPA 333

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILLS E EE  LL  +   +   KV +  P++GEKRK++++ L NA  +  ++++   S
Sbjct: 334 LILLSHEIEEAELLGEALSLRTERKVSLHTPRRGEKRKLVDRTLTNAREALARRMAESAS 393

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +LK   + F L  +P+RIE+YDNSHI G +A+G M+V G  GF KN YR+FN+  +D
Sbjct: 394 QTQLLKGVQRVFDLTDLPQRIEVYDNSHIQGTNALGAMIVAGPEGFEKNHYRRFNMKGDD 453

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
             T DD AMM+ +L+RRFS+L+K  ++               PD+V++DGGKGQLS+   
Sbjct: 454 AATNDDFAMMKAMLKRRFSRLLKERDD-----------GAPVPDLVLIDGGKGQLSSVME 502

Query: 482 VLKKLNVENR--ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + ++L + +   ITI +IAKGP+R AG E F++       L M+DP+LY++QRLRDEAHR
Sbjct: 503 IAEELGITDETGITIAAIAKGPERDAGREAFYLPGKPPFKLPMKDPVLYYLQRLRDEAHR 562

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI  HR +RKK    +PLD I+GIGP RK+ LL  FG+ K +  ++   L +++GIS+ 
Sbjct: 563 FAIGGHRAKRKKQMTDNPLDGIDGIGPSRKKALLAHFGSAKAVRNAALADLEAVDGISRA 622

Query: 599 IACKIYNHFHK 609
           +A KI++ F K
Sbjct: 623 MARKIHDWFQK 633


>gi|163732842|ref|ZP_02140287.1| excinuclease ABC subunit C [Roseobacter litoralis Och 149]
 gi|161394202|gb|EDQ18526.1| excinuclease ABC subunit C [Roseobacter litoralis Och 149]
          Length = 625

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 268/611 (43%), Positives = 385/611 (63%), Gaps = 14/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ SY     HT RI  MIS   ++ F  
Sbjct: 23  LKTLDVSPGVYRMLDSESRVLYVGKARNLRARVSSYARPTGHTPRIARMISLTASMMFLT 82

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL++  H  P + KHR +   +GSY+
Sbjct: 83  TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVSADHDYPQIKKHRGAKKEKGSYY 142

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LR C++S+F  RTRPCL +QIKRCS PC G+IS ++Y +
Sbjct: 143 GPFASAGAVNRTLNQLQRVFLLRDCSNSMFESRTRPCLQYQIKRCSAPCVGKISPQEYRQ 202

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V +A+KFL+G   +++ ++AR+M+QA+   ++E A   RDR+ AL+ +Q          
Sbjct: 203 TVKDAEKFLTGRTTDIQARLARDMSQASEAMEFERAAALRDRIKALTQVQTAQGINPKGV 262

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +L+     AC+Q  F    QN G   ++ +  ++   A++L  FL QFY  +  
Sbjct: 263 AEADIVALHLENGQACVQVFFIRANQNWGNRDYYPRVGADVDAAEVLEAFLGQFYDTREP 322

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  I+LS + E   L+  +   + G KV++ VPK+GEK ++I+ AL NA  S  +K++  
Sbjct: 323 PRQIILSSDIENPDLMADALSGKLGRKVELIVPKRGEKAELIDGALRNARESLARKMAET 382

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   ++K   + F L   P+R+E+YDNSHI G  AVG M+V G  GF+KNQYRKFN+  
Sbjct: 383 ATQARLMKGLAEAFDLKTPPERVEVYDNSHIQGAFAVGAMIVAGTEGFLKNQYRKFNIRG 442

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            D+   DD  MM+ VL RRF +LIK +          E     WPD++++DGG GQ+SA 
Sbjct: 443 EDLTPGDDFGMMKEVLTRRFKRLIKED---------PERKEGHWPDLLLIDGGAGQVSAV 493

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++++  VE+ I ++ +AKG  R AG E+F+        L   DP+LYFIQR+RDEAHR
Sbjct: 494 ASIMREYGVED-IPMVGVAKGVDRDAGKEEFYRTGSRPFALRHNDPVLYFIQRMRDEAHR 552

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   +PLD++ G+G  RKR LL  FG+ K ++R++   L +++G+S  
Sbjct: 553 FAIGTHRAKRSKAVGATPLDDVPGVGAARKRALLAHFGSAKAVARANLTDLKAVDGVSGA 612

Query: 599 IACKIYNHFHK 609
           +A KIY++FH+
Sbjct: 613 LAEKIYDYFHE 623


>gi|84515713|ref|ZP_01003074.1| excinuclease ABC subunit C [Loktanella vestfoldensis SKA53]
 gi|84510155|gb|EAQ06611.1| excinuclease ABC subunit C [Loktanella vestfoldensis SKA53]
          Length = 622

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 262/609 (43%), Positives = 377/609 (61%), Gaps = 14/609 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     H+ RI  MIS+  ++ F  T 
Sbjct: 22  SLDSSPGVYRMLDADSRVLYVGKARNLRARVSNYARPGPHSPRIARMISETASMMFLTTR 81

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T  H  P + KHR + + +G Y+GP
Sbjct: 82  TETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVTKDHDFPMIRKHRGAKSQKGDYYGP 141

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FA   AV +T++ LQR F LR+C+DS F  RTRPCL +QIKRCSGPC G IS   Y   V
Sbjct: 142 FAGAGAVNRTLSQLQRVFLLRNCSDSDFETRTRPCLQYQIKRCSGPCCGMISKPDYALSV 201

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            EA+ FL G    ++E +A  M  A+ +  +E A   RDR+ AL+ +Q+           
Sbjct: 202 KEAENFLQGRTKGIQEALATQMQAASEEMLFERAAALRDRIKALTQVQSAQGINPQNTAE 261

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +L+ +   AC+Q  F    QN G   ++ +   E   A+++  F+ QFY  +  P 
Sbjct: 262 ADVIALHTDGGQACVQVFFIRANQNWGNHDYYPRISGEEDMAEVMEAFVGQFYAGREPPR 321

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++LS   +   L+  +  ++ G K++I VP++GEK ++++ AL NA  S  +K+S   +
Sbjct: 322 MLILSHGLDNDDLMAAALAEKAGRKIEIVVPQRGEKAELVQNALRNARESLARKMSETAT 381

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +LK   + F LP +P+RIE+YDNSHI G  AVG MVV G +GF KNQYRKFN+   D
Sbjct: 382 QSRLLKGLAEAFDLPKVPQRIEVYDNSHIQGAHAVGAMVVAGPDGFDKNQYRKFNIRGED 441

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD  MM+ VL RRF +LIK +          + S  +WPD++++DGG+GQ+SA + 
Sbjct: 442 LTPGDDFGMMKEVLTRRFQRLIKED---------PDRSTGTWPDLLLIDGGQGQVSAVRQ 492

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           ++  + V + I ++ +AKG  R AG E+F       + L   DP+LYFIQR+RDE HRFA
Sbjct: 493 IMDDMGVSD-IPMVGVAKGLDRDAGKEEFHRTGKPVMALRHNDPVLYFIQRMRDEVHRFA 551

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I THR +R KA   +PLD++ G+G  RKR LL  FG+ K ++R++   L +++G+S  +A
Sbjct: 552 IGTHRAKRSKAIGATPLDDVPGVGATRKRALLAHFGSAKAVARANLADLKAVDGVSANMA 611

Query: 601 CKIYNHFHK 609
             IY++FH+
Sbjct: 612 QVIYDYFHE 620


>gi|254470518|ref|ZP_05083922.1| excinuclease ABC, C subunit [Pseudovibrio sp. JE062]
 gi|211960829|gb|EEA96025.1| excinuclease ABC, C subunit [Pseudovibrio sp. JE062]
          Length = 677

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 301/630 (47%), Positives = 407/630 (64%), Gaps = 25/630 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M D  G VLYVGKA +L+KR+ SY      ++RI  MI     + F  T
Sbjct: 49  KRLPLGPGVYRMFDEDGEVLYVGKARSLKKRVTSYTRLQGQSNRIMRMIMATAAMEFVET 108

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILI+  H+ PAL KHR +   +G YFG
Sbjct: 109 RTEPEALLLEANLIKRLRPRFNVLLRDDKSFPYILISADHEAPALIKHRGARIRKGDYFG 168

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV  TIN++Q+ F +R+C+DS + +R+RPCLL+QIKRC+ PCTGEIS E Y   
Sbjct: 169 PFASAGAVNDTINAMQKAFLIRNCSDSYYSNRSRPCLLYQIKRCAAPCTGEISIEDYKGL 228

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG +  +K+++A+ M +A+   D+E A ++RDR+AALSH+Q+H         
Sbjct: 229 VAEAKSFLSGKSQLIKQELAQAMEKASENLDFEQAAVYRDRIAALSHVQSHQGINPQGIE 288

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+ Y      C+Q  FF  GQN G   +F K D     ++IL  FL QFY DKP P
Sbjct: 289 EADVFATYQEGGQTCVQVFFFRTGQNWGNRAYFPKADKSYEPSEILESFLSQFYEDKPPP 348

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LLS + EE  LL  +   +   KV++  PK+GEKR+++E AL NA  +  ++L+   
Sbjct: 349 RMVLLSHDLEEQDLLAEALTARANRKVEVATPKRGEKRELVEHALTNAKGALGRRLAETS 408

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +LK   + F L   P+RI+++DNSHI G +AVG M+V G +GF K QYRKFN+   
Sbjct: 409 SQLKLLKGVAEAFGLDRTPRRIDVFDNSHISGTNAVGGMIVAGSDGFAKGQYRKFNIKSE 468

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNE--------------------ENLNFHPKKQEYSF 460
           D+   DD  MMR VL RRF++L K                      ++            
Sbjct: 469 DLIPGDDYGMMREVLSRRFARLQKENPEGYEQAARFKAQSKASQEAKSDEQDIAPSNADI 528

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
           P+WPD+V++DGGKGQLSA +  L+++ + + I ++ IAKGP R AG EKFFV   ++ +L
Sbjct: 529 PAWPDLVLIDGGKGQLSAVRETLEEMGITD-IPLVGIAKGPDRDAGREKFFVTGEQSFML 587

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVK 579
             RDP+LYF+QR+RDEAHRFAI +HR RRKKA   +PLDEI GIGP RKR+LL+ FGT K
Sbjct: 588 PERDPVLYFVQRMRDEAHRFAIGSHRARRKKAIVANPLDEIAGIGPARKRVLLRHFGTAK 647

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609
            +S++  + L ++ GIS+ IA  IYNHFH+
Sbjct: 648 AVSKAGIDDLRAVSGISESIAKLIYNHFHE 677


>gi|209965179|ref|YP_002298094.1| excinuclease ABC, C subunit, putative [Rhodospirillum centenum SW]
 gi|209958645|gb|ACI99281.1| excinuclease ABC, C subunit, putative [Rhodospirillum centenum SW]
          Length = 694

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 276/610 (45%), Positives = 388/610 (63%), Gaps = 15/610 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PGVY+ML   G VLYVGKA NL++R+ +Y        R+  M+++   + F  T 
Sbjct: 95  TLPDRPGVYRMLSAEGDVLYVGKARNLKRRVTNYTQVAKLPVRLQRMVAETVTMEFVTTH 154

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TEVEALLLE+N+IKRL PR+N+LLRDDKSFP+ILIT  H  P L KHR +    GSY+GP
Sbjct: 155 TEVEALLLESNLIKRLMPRYNVLLRDDKSFPHILITGDHPFPQLTKHRGARDRAGSYYGP 214

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV + + +LQR F +R+C D+VF  RTRPCL FQIKRC+ PC G +    Y   V
Sbjct: 215 FASAGAVNRVMTALQRAFQIRTCTDTVFASRTRPCLQFQIKRCTAPCVGRVGDAGYAAQV 274

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            EAK FLSG +  ++ ++AR M  A    ++E+A   RDR+ AL+ IQ H D        
Sbjct: 275 AEAKSFLSGRSSEVQARLARAMQDAAEALEFETAAKLRDRIRALTAIQAHQDINVEGVED 334

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  + + +  + CIQ  FF  G+N G   +F   D      ++LS F+ QFY +K  PE
Sbjct: 335 ADVIAAHQDGGVTCIQVFFFRGGRNYGNRAYFPSHDKAQDTPEVLSAFVAQFYENKAAPE 394

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +L+SE+  E +LL+ +   + G++V +  PK+G+KR++++ AL NA  +H ++L+   S
Sbjct: 395 LVLVSEDLPEHALLQEALSVRAGHRVALVAPKRGDKRRVVDHALTNAREAHGRRLAESGS 454

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L   P+RIE+YDNSHI G +AVG M+V G  GF+K+ YRKFN+    
Sbjct: 455 QAKLLAGVAEVFGLAEPPQRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSAYRKFNIKDPA 514

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD AMMR VL RRF + +K +          E +  +WPD++++DGG+GQL+ A  
Sbjct: 515 AAG-DDYAMMREVLTRRFERALKED---------PERTGGTWPDLLLIDGGEGQLAVALE 564

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           VL +L +++ + +  IAKGP R AG E+FF+       L+ + P+LY++QRLRDEAHRFA
Sbjct: 565 VLAELGIDD-VPLAGIAKGPDRDAGRERFFLPGRPPFGLDPKSPVLYYLQRLRDEAHRFA 623

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I THR RR+KA   SPLDEI GIGP RK+ LL  FG+ + +SR+  + LAS+EGIS+ +A
Sbjct: 624 IGTHRARREKALGASPLDEIAGIGPRRKKALLHHFGSARAVSRAGLQDLASVEGISEAVA 683

Query: 601 CKIYNHFHKN 610
             IY+HFH +
Sbjct: 684 RIIYDHFHPD 693


>gi|146278891|ref|YP_001169050.1| excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17025]
 gi|145557132|gb|ABP71745.1| Excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17025]
          Length = 623

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 267/604 (44%), Positives = 369/604 (61%), Gaps = 14/604 (2%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+MLD   +VLYVGKA NL+ R+ +Y   + H+ RI  MI +  ++ F  T TE E
Sbjct: 28  SPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASMMFLTTRTETE 87

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK+LKPR+N+LLRDDKSFP ILI   H  P L KHR   + +GSYFGPFAS 
Sbjct: 88  ALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHAFPMLKKHRGKKSEKGSYFGPFASA 147

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            AV +T+N LQR F LR+C+D+ F  RTRPCLL+QIKRCS PC G I+ E Y   + +A+
Sbjct: 148 GAVNRTLNQLQRVFLLRTCSDATFDSRTRPCLLYQIKRCSAPCVGRITPEDYAGMIGDAE 207

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245
           +FL G    ++  +A  M  A+   ++E A   RDR+ AL+ +Q+            D  
Sbjct: 208 RFLQGRTTKVQANLAEQMRAASEAMEFERAAALRDRIKALTQVQSSQGINPRGVAEADVI 267

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           +++     AC+Q  F    Q+ G   F+ +T + +   +IL  FL QFY DK  P  ILL
Sbjct: 268 AVHLEGGQACVQVFFIRANQSWGNRDFYPRTGAGAEEPEILEAFLAQFYDDKEPPRMILL 327

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           S   +   L+     ++ G KV + VP++GEK +++E A  NA  S  ++++   +   +
Sbjct: 328 SHPVDNPDLVAQLLSQRAGRKVTLGVPQRGEKAELVENAARNARESLARRMAESATQNKL 387

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L    + F L   P RIE+YDNSHI G +AVG M+V G  GF+K+QYRKFN+        
Sbjct: 388 LAGLAEAFDLDAPPCRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRGAAGAQG 447

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD  MM+ VL RRF +L+K +          E    +WPD++++DGG GQ+SA Q +L++
Sbjct: 448 DDFGMMKEVLTRRFERLLKED---------PERKSDAWPDLLLIDGGAGQVSAVQEILQE 498

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L V++ I  I +AKG  R AG E+F         L M DP+LYF+QRLRDEAHR+AI  H
Sbjct: 499 LGVDD-IPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHRWAIGAH 557

Query: 546 RKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R KA   +PLDEI G+G  RKR LL  FG+ K +SR+    L ++EGIS+ +A  I+
Sbjct: 558 RAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVSRAGLPDLCAVEGISETLAQTIH 617

Query: 605 NHFH 608
           +HFH
Sbjct: 618 DHFH 621


>gi|240850242|ref|YP_002971635.1| excinuclease ABC subunit C [Bartonella grahamii as4aup]
 gi|240267365|gb|ACS50953.1| excinuclease ABC subunit C [Bartonella grahamii as4aup]
          Length = 659

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 309/610 (50%), Positives = 409/610 (67%), Gaps = 5/610 (0%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M+   G +LY+GKA NL+KR+ +Y     H +RIT MI    ++ F VT 
Sbjct: 49  HLPHKPGVYRMIGKNGDILYIGKARNLKKRVSNYTREQGHNNRITRMIRATYHMEFIVTH 108

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IKRL P FN+LLRDDKSFPYI+ITD H++P LYKHR + T +  YFGP
Sbjct: 109 TETEALLLEANLIKRLHPHFNVLLRDDKSFPYIMITDDHRVPGLYKHRGARTRKAHYFGP 168

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +T++ LQR F LR+C DSVF +RTRPCLL+QIKRCS PCT EIS   Y E +
Sbjct: 169 FASAGAVTQTVHVLQRAFLLRTCTDSVFENRTRPCLLYQIKRCSAPCTHEISDNDYKELL 228

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
             AK FLSG + ++K  + + M++A    D+E A  +RDRL+ALSHIQ+H          
Sbjct: 229 RGAKAFLSGKDQSVKNNMVQAMHKAAENLDFEQAASYRDRLSALSHIQSHQGINPQTIKE 288

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F++   + + CIQ  FF  GQN G   +F K D   +  +IL+ FL QFY DKP P+
Sbjct: 289 ADVFAIAQKEGMTCIQVFFFRMGQNWGNRAYFPKADPSFSCTEILASFLAQFYDDKPLPK 348

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
           +ILLSEE EE +LL  +   +  +KV +++PKQGE++ ++  A +NAH +   KLS   +
Sbjct: 349 SILLSEEIEEKTLLTEALSLKANHKVSLSLPKQGERKTLVNHAYLNAHEALEHKLSETAT 408

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
           H  +L+   K F LP  P+RIE+YDNSHIMG +AVG M+V G+ GFVKNQYRKFN+   D
Sbjct: 409 HTKLLQGLAKIFQLPFPPRRIEVYDNSHIMGTNAVGAMIVAGQMGFVKNQYRKFNIRSID 468

Query: 422 VKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           +   DD  MM+ V++RRFS+LIK  ++    H  K    FP WPD++++DGG+GQ+++  
Sbjct: 469 ITPGDDFGMMKEVIKRRFSRLIKEHDQPNRSHDIKDNDLFPIWPDLILIDGGEGQINSVH 528

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L +L + +  T++ IAKG  R AG E+FF+K      L  RDPILYF+QRLRDEAHRF
Sbjct: 529 AILAELQLNDLFTVVGIAKGVDRHAGRERFFIKGIPPFTLPPRDPILYFLQRLRDEAHRF 588

Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI  HR +RKK    +PLDEI  IGP RKR LL  FG+ K I+ +S E L  + GIS  I
Sbjct: 589 AIGAHRIKRKKETFKNPLDEIENIGPTRKRALLHHFGSAKAIASASLEDLKKVTGISMTI 648

Query: 600 ACKIYNHFHK 609
           A KI+NHFH+
Sbjct: 649 AQKIHNHFHE 658


>gi|197104065|ref|YP_002129442.1| UvrC, excinuclease ABC, C subunit [Phenylobacterium zucineum HLK1]
 gi|196477485|gb|ACG77013.1| UvrC, excinuclease ABC, C subunit [Phenylobacterium zucineum HLK1]
          Length = 662

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 283/609 (46%), Positives = 391/609 (64%), Gaps = 14/609 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P+ PGVY+M+   G VLYVGKA +L+KR+  Y     HT RI HM+     + F  T 
Sbjct: 63  RLPDRPGVYRMIGEDGEVLYVGKARSLKKRVLQYAQGRFHTQRIAHMVDLTRAMEFVTTR 122

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+LKPRFN+LLRDDKSFP I+I   H  P L KHR + +I+G YFGP
Sbjct: 123 TETDALLLEINLIKQLKPRFNVLLRDDKSFPEIVIRRDHAAPQLRKHRGAHSIKGDYFGP 182

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +T+N+LQ+ F LRSC+DSV+  RTRPC+L QI+RCS PCTG IS E Y   V
Sbjct: 183 FASAWAVNRTLNTLQKAFLLRSCSDSVYETRTRPCMLHQIRRCSAPCTGLISLEDYNALV 242

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            EA  FL G +  + E++A  M  A    ++E A   RDR+ AL+ +           + 
Sbjct: 243 DEAGAFLRGKSRAVMERMAGEMQAAAEDLEFERAARLRDRIRALASVAQEQQINPETVDE 302

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F+L+     AC+Q  FF  GQN G   +F + D    +  ++  FL QFY DKP P 
Sbjct: 303 ADVFALHAEGGQACVQVFFFRAGQNWGNRAYFPRVDKSDEDPDVMGAFLGQFYDDKPIPR 362

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            IL++    E  LL  +F ++ G KV+I+ P++GEKR+I++ AL NA  +  +K++   +
Sbjct: 363 MILVNVVPAECELLSEAFCQKSGRKVEISRPQRGEKRQIVQHALTNAREALGRKMAESSA 422

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L   P+RIE+YDNSHIMG +AVG M+V G  GF K+QYRKFN+  ++
Sbjct: 423 QSKLLAGVCEAFGLEGSPERIEVYDNSHIMGTNAVGGMIVAGPEGFQKSQYRKFNIRSSE 482

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD  MMR VL RRFS+L+K EE      +         PD+V++DGG+GQL AA  
Sbjct: 483 LTPGDDYGMMREVLRRRFSRLVKEEEEGGEAVR---------PDLVLIDGGRGQLDAAME 533

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           V+  L V++ I ++ +AKGP R AG+E+FF+   E  +L  + P+LY++QRLRDEAHRFA
Sbjct: 534 VMADLGVDD-IPVVGVAKGPDRDAGLERFFMPGKEPFMLEPKSPVLYYLQRLRDEAHRFA 592

Query: 542 ITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I +HR RR      +PLDEI+G+GP RKR LL +FG+ + +SR+S   LA +EG+S+ +A
Sbjct: 593 IGSHRTRRAMDMKKNPLDEIDGVGPGRKRALLHTFGSARGVSRASVADLAKVEGVSEALA 652

Query: 601 CKIYNHFHK 609
            +IY+HFHK
Sbjct: 653 QRIYDHFHK 661


>gi|90422420|ref|YP_530790.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisB18]
 gi|119367825|sp|Q21AW5|UVRC_RHOPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|90104434|gb|ABD86471.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisB18]
          Length = 699

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 290/610 (47%), Positives = 389/610 (63%), Gaps = 5/610 (0%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+ML+ A  VLYVGKA N++KR+ SY     H  RI+ MI+   ++    T TE
Sbjct: 91  PTSPGVYRMLNAASDVLYVGKAKNVKKRLASYARPTGHVVRISRMIAATVSVEIISTATE 150

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT  H  P + KHR + +  G YFGPFA
Sbjct: 151 TEALLLEANLIKQLRPRFNVLLRDDKSFPYILITGDHWAPQIIKHRGAQSRPGRYFGPFA 210

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           SV +V +TI +LQR F +RSC D+ F  RTRPCLL+QIKRC+GPCTGEI    Y   V E
Sbjct: 211 SVGSVNRTITALQRAFLMRSCTDAFFESRTRPCLLYQIKRCAGPCTGEIDFPGYTALVRE 270

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A  FLSG +  +K+++A  M +A+ + ++E+A ++RDRLAALS IQ+            D
Sbjct: 271 ATDFLSGRSRLVKQELAGEMEKASAELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 330

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F+++      C++  FF  GQN G   +F + +   T  ++L+ FL QFY DK  P+ I
Sbjct: 331 VFAIHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKTFTVEEVLAAFLAQFYDDKAPPKQI 390

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           LLS   EE  LL  +   + G+KV+I  P++GEK++++  AL NA  +  +KL+   +  
Sbjct: 391 LLSHRIEECELLAEALCIKSGHKVEILTPQRGEKKELVGHALTNAREALGRKLADTATQT 450

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
            +L+       LPH PKRIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+    + 
Sbjct: 451 RLLQGLVTTLKLPHTPKRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEGIT 510

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD  MMR VLERRF +L+           K +   P WPD+VI+DGG+GQL+A Q + 
Sbjct: 511 PGDDYGMMREVLERRFKRLLAPPPEAEAGKPKPDDEVPQWPDLVIIDGGRGQLNAVQEIF 570

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           + L +   +T++++AKGP R AG E  F+     + L  RDP+LYFIQRLRDEAHRF I 
Sbjct: 571 QALGLST-VTLMAVAKGPDRDAGRETLFMPDRLPIKLEPRDPVLYFIQRLRDEAHRFVIG 629

Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           +HRK RKK      L EI GIGP RKR LL  FGT+K I R+S   L  + GIS + A +
Sbjct: 630 SHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASLGDLGKVPGISAESAKR 689

Query: 603 IYNHFHKNTS 612
           I+++FH    
Sbjct: 690 IFDYFHPQPG 699


>gi|121602255|ref|YP_988831.1| excinuclease ABC subunit C [Bartonella bacilliformis KC583]
 gi|120614432|gb|ABM45033.1| excinuclease ABC, C subunit [Bartonella bacilliformis KC583]
          Length = 658

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 307/610 (50%), Positives = 416/610 (68%), Gaps = 5/610 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+M +  G VLYVGKA NL+KR+ +Y H + H +RI  MI   +++ F VT
Sbjct: 49  KHLPHKPGVYRMFNEYGDVLYVGKARNLKKRVSNYTHEHGHNNRIIRMIRATSHMEFVVT 108

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALLLEAN+IKRL+PRFNILLRDDKSFPYI+ITD H+IPALYKHR + T +  YFG
Sbjct: 109 HTEIEALLLEANLIKRLQPRFNILLRDDKSFPYIIITDDHRIPALYKHRGARTRKAHYFG 168

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN LQR F LR+C DSV  +RTRPCLL+QIKRCS PCT EI++  Y++ 
Sbjct: 169 PFASASAVTQTINVLQRAFLLRTCTDSVLENRTRPCLLYQIKRCSAPCTNEINNSDYIKL 228

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EA+ FLSG + ++K+ + + M++A    D+E A  +RDRL+ALSH+Q+H         
Sbjct: 229 VKEARAFLSGKSQSIKQDMVQAMHKAAENLDFERAANYRDRLSALSHVQSHQGINPRTIE 288

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++     + CIQ  FF  GQN G   +F K D   ++A+IL+ F+ QFY +KP P
Sbjct: 289 EADVFAIAQQGGITCIQVFFFRMGQNWGNQAYFPKADPSFSSAEILASFIAQFYDNKPIP 348

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLSEE EE  LL  +   +   K+ +++P+ GE++ +I  A  NAH +  +KLS   
Sbjct: 349 KLILLSEEIEEAVLLTEALSLKAHCKISLSLPRNGERKTLINHAYTNAHEALGRKLSETS 408

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           ++  + ++  + F LP  P R+E+YDNSHIMG +AVG M+V  + GF+KNQYRKFN+   
Sbjct: 409 TYTKLFQNLAEIFQLPRTPNRLEVYDNSHIMGTNAVGIMIVANQTGFIKNQYRKFNIRST 468

Query: 421 DVKTQDDCAMMRMVLERRFSQLIK-NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           D+   DD  MM+ V+ERRFS+LIK           + E SFP WPD++++DGG+GQ +  
Sbjct: 469 DITPGDDLGMMKEVIERRFSRLIKTYGLPTQNKDIEDENSFPMWPDLILIDGGEGQTNIV 528

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + +L KL V++ +T++ IAKG  R AG E+FF++   +  L+ RDPILYF+QRLRDEAHR
Sbjct: 529 RTILSKLGVDDLVTVVGIAKGTDREAGRERFFIQGKPSFTLSPRDPILYFLQRLRDEAHR 588

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +RKK    +PLDEIN IGP RKR LL  FG+ K I+ +S E L  + GIS  
Sbjct: 589 FAIGTHRTKRKKETFKNPLDEINNIGPTRKRALLNYFGSTKAIANASVEDLTKVSGISIT 648

Query: 599 IACKIYNHFH 608
           IA  I+NHF+
Sbjct: 649 IAQNIHNHFN 658


>gi|297537903|ref|YP_003673672.1| excinuclease ABC subunit C [Methylotenera sp. 301]
 gi|297257250|gb|ADI29095.1| excinuclease ABC, C subunit [Methylotenera sp. 301]
          Length = 599

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 227/611 (37%), Positives = 331/611 (54%), Gaps = 24/611 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M++    V+YVGKA +L+KR+ SY + N  + R   M+S I  I  TV
Sbjct: 8   LKNLPNLPGVYRMINATDEVIYVGKAKDLKKRVSSYFNKNLPSPRTRMMVSHIVKIETTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T  E EALLLE N+IK L PR+N+L RDDKS+PYI+IT     P L  HR +      YF
Sbjct: 68  THNEAEALLLENNLIKGLMPRYNVLFRDDKSYPYIVITGDDS-PRLAFHRGTQRKGNQYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +  AV ++I  LQ+ F LR+C ++VF +R+RPCL  QI+RC+ PC G IS E Y  
Sbjct: 127 GPFPNSVAVRESIQLLQKVFKLRTCENTVFANRSRPCLQHQIERCTAPCVGLISDENYKN 186

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239
            VH+A  FL G  + + + +   MN A   ++YE A++ RDR+ AL  +Q          
Sbjct: 187 DVHQAAMFLQGKTNEVIDALGARMNTAAANQEYEMAVVFRDRMQALRQVQAKQFVSDFNV 246

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           +  D  +    +   CI       G++ G  ++  K     T    +  FL Q Y  +  
Sbjct: 247 SDADVIACAELQGQHCINLVMIRGGRHLGDRSYMPKNTEGETLETSMEAFLAQHYVAQNT 306

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  I++  + E   L E    +Q G KVKI     G+KR  ++ A  NA  +  Q+ +T 
Sbjct: 307 PPLIVVGVKIETAVL-EEVLSEQAGRKVKINTNPIGDKRVWLKMAQTNADLALGQRAATS 365

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +    L    +   LP   +RIE +D SH MG + VG  VV        ++YR++N+  
Sbjct: 366 ANQTAKLLALREALHLPDNTERIECFDISHTMGEATVGSCVVFDRGDMQNSEYRRYNV-- 423

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR VL RR+ ++   E                 PD++ +DGGKGQL  A
Sbjct: 424 TGITPGDDYAAMRDVLTRRYKKVAAGE--------------GVRPDLIFIDGGKGQLGVA 469

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538
             V+ ++ +E+ I ++ IAKG +R  G+E   F   GE L L   +  L+ +Q++RDEAH
Sbjct: 470 VEVMAEVGLED-ILLVGIAKGEERRPGLETMIFSDTGEMLNLEKDNKGLHLLQQIRDEAH 528

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR +R KA  +S L++I GIG  R++ LL  FG +  +  +S + +A +EGIS+
Sbjct: 529 RFAITGHRAKRAKARLHSSLEDIEGIGAKRRKALLTRFGGLDGVKGASIDEIAQVEGISQ 588

Query: 598 KIACKIYNHFH 608
            +A KIY   H
Sbjct: 589 SLAEKIYGELH 599


>gi|114705636|ref|ZP_01438539.1| excinuclease ABC subunit C [Fulvimarina pelagi HTCC2506]
 gi|114538482|gb|EAU41603.1| excinuclease ABC subunit C [Fulvimarina pelagi HTCC2506]
          Length = 716

 Score =  572 bits (1473), Expect = e-161,   Method: Composition-based stats.
 Identities = 300/625 (48%), Positives = 402/625 (64%), Gaps = 19/625 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M    G VLYVGKA +L+KR+ SY     HT RI  MI     + F  T
Sbjct: 92  KRLPNQPGVYRMFGSDGDVLYVGKARSLKKRVASYARLGGHTQRIARMIRLTRQMEFVTT 151

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRLKPRFN+L+RDDKSFPYIL+TD H+ PA+ KHR +   +GS+FG
Sbjct: 152 RTETEALLLEANLIKRLKPRFNVLMRDDKSFPYILVTDDHQAPAIVKHRGARNRKGSFFG 211

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV++TINSLQR F LR+C DSVF  RTRPCLL QIKRC+GPCTGEIS E Y   
Sbjct: 212 PFASAGAVDRTINSLQRAFLLRTCTDSVFESRTRPCLLHQIKRCAGPCTGEISQEDYRSL 271

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V +AK FLSG +  +KE +A  M  A+   D+E A + RDRLAALSH+ +H         
Sbjct: 272 VKQAKGFLSGRSGQVKEAMAEQMTSASDDLDFERAALFRDRLAALSHVSSHQGINPQSVE 331

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    L C+Q  FF  GQN G   +F K D       +L  F+ QFY DKP P
Sbjct: 332 EADVFAIHQEGGLTCVQVFFFRTGQNWGNRAYFPKADPSLEPDAVLGAFIAQFYDDKPAP 391

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             IL   + ++ +LL  +   +   KV+I  P +G KR +++ A  NA  +  +KL+   
Sbjct: 392 RLILSQVKLDDEALLAEALAIKAERKVRIEKPARGAKRDLVDHAASNAKEALGRKLAETS 451

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F+L   P+RIE++DNSHIMG +A+G M+V G  GFVKNQYRKFN+   
Sbjct: 452 SQARLLEGLKETFSLERTPRRIEVFDNSHIMGTNAIGAMIVAGPEGFVKNQYRKFNIKST 511

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKN--------------EENLNFHPKKQEYSFPSWPDV 466
           ++   DD  MM+ V+ RRFS+LIK+              +  ++      +  FP+WPD+
Sbjct: 512 EITPGDDFGMMKEVMTRRFSRLIKDHADEMPGAKPEPAPDTEIDEPEDLADTPFPAWPDL 571

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           V++DGGKGQ+SA + +L++L + +++  I +AKG  R AG E+F     +   L  RDP+
Sbjct: 572 VLIDGGKGQMSAVRSILEELGIADKVMTIGVAKGVDREAGRERFIQGAKD-FSLPPRDPV 630

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           LYF+QR+RDEAHRFAI THR +RKK    +PLDEI GIGP RKR LLQ FGT K +SR+ 
Sbjct: 631 LYFVQRMRDEAHRFAIGTHRAKRKKEMIKNPLDEIAGIGPTRKRALLQHFGTAKAVSRAG 690

Query: 586 PETLASIEGISKKIACKIYNHFHKN 610
              L +++GIS+ IA  +Y+HFH+N
Sbjct: 691 LPDLRAVDGISETIAKLVYDHFHEN 715


>gi|254466793|ref|ZP_05080204.1| excinuclease ABC, C subunit [Rhodobacterales bacterium Y4I]
 gi|206687701|gb|EDZ48183.1| excinuclease ABC, C subunit [Rhodobacterales bacterium Y4I]
          Length = 633

 Score =  572 bits (1473), Expect = e-161,   Method: Composition-based stats.
 Identities = 265/611 (43%), Positives = 387/611 (63%), Gaps = 15/611 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y    N + RI  MI+   ++ F  T
Sbjct: 33  KTLDASPGVYRMLDADSRVLYVGKARNLKARVSNYTRPGN-SPRIERMIALTASMMFLTT 91

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+   H  P + KHR +   +GSYFG
Sbjct: 92  RTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHAFPQIKKHRGARKQKGSYFG 151

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +T+N LQ+ F LR+C+DS+F  RTRPCL +QIKRCS PCTG IS   Y   
Sbjct: 152 PFASAGAVNRTLNQLQKAFLLRNCSDSMFETRTRPCLQYQIKRCSAPCTGLISEADYAAS 211

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240
           V +A++FLSG +  ++E++A  M  A+   ++E A   RDR+ AL+ +Q+          
Sbjct: 212 VRDAERFLSGRSTKVQEELAEQMMAASEAMEFERAAALRDRIKALTQVQSSQGINPRGVA 271

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   L+  +  AC+Q  F    QN G   F+ + D++++ A+I+  FL QFYT+K  P
Sbjct: 272 EADVIGLHLERGQACVQVFFIRANQNWGNQDFYPRVDADNSPAEIMEAFLGQFYTNKEPP 331

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ++LS+  E   L+E +  +    KV++ VP++GEK +++  A+ NA  S  ++++   
Sbjct: 332 RQLILSDAIENADLMEQALSESADRKVELLVPQRGEKTELVAFAVRNARESLARRMAESA 391

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   +L+   + F L   P+RIE+YDNSHI G +AVG M+V+G  GF+KN YRKFN+  +
Sbjct: 392 TQAKLLRGLAEAFGLEGPPQRIEVYDNSHIQGTNAVGGMIVMGPEGFLKNAYRKFNIRGD 451

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MM+ VL RRFS+L+K +          +     WPD++++DGG GQ+SA  
Sbjct: 452 DLVPGDDFGMMKEVLHRRFSRLLKED---------PDRDKGLWPDLLLIDGGAGQVSAVA 502

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            ++++  V++ I ++ +AKG  R  G E+F+        L   DP+LYFIQR+RDEAHRF
Sbjct: 503 EIMEEHGVQD-IPMVGVAKGVDRDHGKEEFYRPGAPVFALQRNDPVLYFIQRMRDEAHRF 561

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR +R KA   +PLDE+ G+G  RKR LL  FG+ K +SR++   L ++EGIS+ +
Sbjct: 562 AIGTHRAKRAKAVSATPLDEVPGVGASRKRALLAHFGSAKAVSRANLSDLKAVEGISEAL 621

Query: 600 ACKIYNHFHKN 610
           A +IY+HFH +
Sbjct: 622 AERIYDHFHSS 632


>gi|221640567|ref|YP_002526829.1| excinuclease ABC subunit C [Rhodobacter sphaeroides KD131]
 gi|221161348|gb|ACM02328.1| UvrABC system protein C [Rhodobacter sphaeroides KD131]
          Length = 607

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/612 (43%), Positives = 374/612 (61%), Gaps = 14/612 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   +VLYVGKA NL+ R+ +Y   + H+ RI  MI +  ++ F  
Sbjct: 6   LKTLDGSPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASMMFLT 65

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKPR+N+LLRDDKSFP ILI   H  P L KHR   + +GSYF
Sbjct: 66  TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEKGSYF 125

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LR+C+D+ F  RTRPCLLFQIKRCS PC G + +E Y E
Sbjct: 126 GPFASAGAVNRTLNQLQRVFLLRTCSDATFESRTRPCLLFQIKRCSAPCVGRVPAEDYAE 185

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            + +A++FL G    ++  +A  M  A+   ++E A   RDR+ AL+ +Q+         
Sbjct: 186 LIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQVQSSQGINPRGV 245

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +++     AC+Q  F    Q+ G   FF +T + +   +IL  FL QFY DK  
Sbjct: 246 AEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGAGAEEPEILEAFLAQFYDDKEP 305

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ILLS   +   L+     ++ G KV + VP++GEK +++E A  NA  S  ++++  
Sbjct: 306 PRMILLSHPVDNPDLVGQLLSERAGRKVTLGVPQRGEKAELVENAARNARESLARRMAES 365

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L    + F L   PKRIE+YDNSHI G +AVG M+V G  GF+K+QYRKFN+  
Sbjct: 366 ATQNRLLAGLAEAFELDAAPKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRG 425

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
                 DD  MM+ VL RRF +L+K +          E    +WPD++++DGG GQ+SA 
Sbjct: 426 AAGAQGDDFGMMKEVLTRRFERLLKED---------PERKTDAWPDLLLIDGGAGQVSAV 476

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           Q +L++L V++ +  I +AKG  R AG E+F         L M DP+LYF+QRLRDEAHR
Sbjct: 477 QEILQELGVDD-VPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHR 535

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           +AI  HR +R KA   +PLDEI G+G  RKR LL  FG+ K ++R+    L ++EGIS+ 
Sbjct: 536 WAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEGISET 595

Query: 599 IACKIYNHFHKN 610
           +A  I+++FH +
Sbjct: 596 MAQSIHDYFHGS 607


>gi|77464655|ref|YP_354159.1| excinuclease ABC subunit C [Rhodobacter sphaeroides 2.4.1]
 gi|90111760|sp|Q3IYX6|UVRC_RHOS4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|77389073|gb|ABA80258.1| Excinuclease ABC subunit C [Rhodobacter sphaeroides 2.4.1]
          Length = 623

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/612 (43%), Positives = 374/612 (61%), Gaps = 14/612 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   +VLYVGKA NL+ R+ +Y   + H+ RI  MI +  ++ F  
Sbjct: 22  LKTLDGSPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASMMFLT 81

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKPR+N+LLRDDKSFP ILI   H  P L KHR   + +GSYF
Sbjct: 82  TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEKGSYF 141

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LR+C+D+ F  RTRPCLLFQIKRCS PC G + +E Y E
Sbjct: 142 GPFASAGAVNRTLNQLQRVFLLRTCSDATFESRTRPCLLFQIKRCSAPCVGRVPAEDYAE 201

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            + +A++FL G    ++  +A  M  A+   ++E A   RDR+ AL+ +Q+         
Sbjct: 202 LIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQVQSSQGINPRGV 261

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +++     AC+Q  F    Q+ G   FF +T + +   +IL  FL QFY DK  
Sbjct: 262 AEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGAGAEEPEILEAFLAQFYDDKEP 321

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ILLS   +   L+     ++ G KV + VP++GEK +++E A  NA  S  ++++  
Sbjct: 322 PRMILLSHPVDNPDLVGQLLSERAGRKVTLGVPQRGEKAELVENAARNARESLARRMAES 381

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L    + F L   PKRIE+YDNSHI G +AVG M+V G  GF+K+QYRKFN+  
Sbjct: 382 ATQNRLLAGLAEAFELDAAPKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRG 441

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
                 DD  MM+ VL RRF +L+K +          E    +WPD++++DGG GQ+SA 
Sbjct: 442 AAGAQGDDFGMMKEVLTRRFERLLKED---------PERKTDAWPDLLLIDGGAGQVSAV 492

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           Q +L++L V++ +  I +AKG  R AG E+F         L M DP+LYF+QRLRDEAHR
Sbjct: 493 QEILQELGVDD-VPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHR 551

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           +AI  HR +R KA   +PLDEI G+G  RKR LL  FG+ K ++R+    L ++EGIS+ 
Sbjct: 552 WAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEGISET 611

Query: 599 IACKIYNHFHKN 610
           +A  I+++FH +
Sbjct: 612 MAQSIHDYFHGS 623


>gi|254491452|ref|ZP_05104631.1| excinuclease ABC, C subunit [Methylophaga thiooxidans DMS010]
 gi|224462930|gb|EEF79200.1| excinuclease ABC, C subunit [Methylophaga thiooxydans DMS010]
          Length = 613

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/612 (39%), Positives = 355/612 (58%), Gaps = 22/612 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD  G V+YVGKA NL+KR+ SY      T +   M++QI  I  TV
Sbjct: 19  LKNLTGRPGVYRMLDHTGTVIYVGKAKNLKKRVSSYFRKTGLTAKTQVMVAQIAAIETTV 78

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N+IK L PR+NILLRDDKS+PY+ I+     P L  HR +    G YF
Sbjct: 79  THTENEALILENNLIKELMPRYNILLRDDKSYPYLFIS-GDTFPRLSVHRGAKRKVGKYF 137

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ S  AV +++N LQ+ F +R C DS + +R+RPCL +QIKRC+ PC G +S E Y +
Sbjct: 138 GPYPSAGAVRESLNLLQKLFPVRQCEDSYYYNRSRPCLQYQIKRCTAPCVGLVSEEDYKK 197

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            V     FL G N  + + ++ +M  A+ + D+E A   RD++ AL  +Q          
Sbjct: 198 DVEHTILFLEGKNQQVMDDLSADMEAASQRLDFEQAAAIRDKVIALRRVQERQYVSSEQG 257

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D  +      +A ++ CF   G+N G+ ++F K  ++S+  ++L+ F+ Q+Y  K  P
Sbjct: 258 EFDVLAAIVKDGMAVVEVCFIRGGRNLGSKSYFPKGSADSSPEELLAAFIPQYYLGKNVP 317

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ILLS +A++ SLL+     + G+KV +  PK+G+  + ++ A  NA  S  Q+LS+  
Sbjct: 318 SEILLSHQADDISLLQDVLQTESGHKVSLRQPKRGQGVRWMQMAKTNADISLAQRLSSRS 377

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +     +       L  +PKRIE +D SH  G   V   VV G  G +K  YRKFN+   
Sbjct: 378 NLLQRFEVLQDALELDELPKRIECFDISHTRGERTVASCVVFGLEGAIKADYRKFNIEG- 436

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A M   L RRF++L K E                 PD++++DGGKGQ+  AQ
Sbjct: 437 -ITGGDDYAAMNQALSRRFTRLQKGE--------------GKRPDLLLIDGGKGQIKEAQ 481

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
            VL +LN+ + + I+ IAKGP+R  G E  F V +   + L+   P L+ +Q++RDEAHR
Sbjct: 482 EVLAELNLSD-LPILGIAKGPERKPGEESLFLVGRAGEVTLSADSPALHLLQQVRDEAHR 540

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR+RR KA   S L+ I G+GP R++ LLQ FG ++ + R+  E L+ +EGISK 
Sbjct: 541 FAITGHRQRRAKARKTSTLEHIEGLGPKRRQKLLQQFGGLQEVQRAGVEDLSKVEGISKS 600

Query: 599 IACKIYNHFHKN 610
           +A KIY+ FH +
Sbjct: 601 LAQKIYDVFHGD 612


>gi|159043197|ref|YP_001531991.1| excinuclease ABC subunit C [Dinoroseobacter shibae DFL 12]
 gi|157910957|gb|ABV92390.1| excinuclease ABC [Dinoroseobacter shibae DFL 12]
          Length = 631

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 268/610 (43%), Positives = 378/610 (61%), Gaps = 14/610 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y   + H+ RI  MIS+  ++ F  
Sbjct: 28  LKTLDGSPGVYRMLDAQSRVLYVGKARNLKARVSNYARPSGHSARIARMISETASMMFLT 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+   H  P + KHR     +G+Y+
Sbjct: 88  TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVAKDHAYPQIRKHRGRKATKGAYY 147

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQ+ F LR+C+D++F  RTRPCLL+QIKRCSGPC G IS E Y  
Sbjct: 148 GPFASAGAVNRTLNQLQKAFLLRNCSDAMFESRTRPCLLYQIKRCSGPCVGYISEEDYDA 207

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            V +A++FLSG +  ++E++A  M +A    ++E A   RDR+ A++ +Q+         
Sbjct: 208 SVRDAERFLSGKSTEVQERLAVQMTEAAEAMEFERAAALRDRIRAMTQVQSAQGINPRGV 267

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           +  D  +L+     AC+Q  F    QN G   F+ +T + +   +IL  FL QFY  K  
Sbjct: 268 SEADVIALHLENGQACVQVFFIRANQNWGNRDFYPRTGAGAEAPEILEAFLGQFYDQKDP 327

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ILLS   +   L+  +  ++ G KV+I VPK+GEK ++I  A  NA  S  ++++  
Sbjct: 328 PRQILLSHPIDNHDLMADALGEKRGRKVEILVPKRGEKAELIAGAERNARESLARRMAES 387

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L+   + F L   PKRIE+YDNSHI G  AVG M+V G +GF+K+QYRKFN+  
Sbjct: 388 ATQTKLLRGLAEAFDLDAPPKRIEVYDNSHIQGTDAVGAMIVSGPDGFLKSQYRKFNIRG 447

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            D+   DD  MM+ VL+RRF +L+K + +              WPD++++DGG GQ+SA 
Sbjct: 448 TDLTPGDDFGMMKEVLQRRFQRLLKEDPDRESEA---------WPDLLLIDGGAGQVSAV 498

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             +L  L VE+ +  I +AKG  R AG E+F         L   DP+LYF+QRLRDEAHR
Sbjct: 499 ADILGDLGVED-VPFIGVAKGVDRDAGKEEFHRPGARPTALRHNDPVLYFVQRLRDEAHR 557

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R K+   +PLD++ G+G  RKR LL  FG+ K +SR++   L ++EG+S  
Sbjct: 558 FAIGTHRAKRSKSVSRTPLDDVPGVGAKRKRALLAHFGSAKAVSRANLSDLKAVEGVSAT 617

Query: 599 IACKIYNHFH 608
           +A  IY+ FH
Sbjct: 618 MAQTIYDFFH 627


>gi|126463495|ref|YP_001044609.1| excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17029]
 gi|126105159|gb|ABN77837.1| Excinuclease ABC subunit C [Rhodobacter sphaeroides ATCC 17029]
          Length = 623

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/612 (43%), Positives = 373/612 (60%), Gaps = 14/612 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   +VLYVGKA NL+ R+ +Y   + H+ RI  MI +  ++ F  
Sbjct: 22  LKTLDGSPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASMMFLT 81

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKPR+N+LLRDDKSFP ILI   H  P L KHR   + +GSYF
Sbjct: 82  TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEKGSYF 141

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LR+C+D+ F  RTRPCLLFQIKRCS PC G + +E Y E
Sbjct: 142 GPFASAGAVNRTLNQLQRVFLLRTCSDATFESRTRPCLLFQIKRCSAPCVGRVPAEDYAE 201

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            + +A++FL G    ++  +A  M  A+   ++E A   RDR+ AL+ +Q+         
Sbjct: 202 LIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQVQSSQGINPRGV 261

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +++     AC+Q  F    Q+ G   FF +T + +   +IL  FL QFY DK  
Sbjct: 262 AEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGAGAEEPEILEAFLAQFYDDKEP 321

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ILLS   +   L+     ++ G KV + VP++GEK +++E A  NA  S  ++++  
Sbjct: 322 PRMILLSHPVDNPDLVGQLLSERAGRKVTLGVPQRGEKAELVENAARNARESLARRMAES 381

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L    + F L   PKRIE+YDNSHI G +AVG M+V G  GF+K+QYRKFN+  
Sbjct: 382 ATQNRLLAGLAEAFELDAAPKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRG 441

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
                 DD  MM+ VL RRF +L+K +          E    +WPD++++DGG GQ+SA 
Sbjct: 442 AAGAQGDDFGMMKEVLTRRFERLLKED---------PERKTDAWPDLLLIDGGAGQVSAV 492

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           Q +L++L V++ +  I +AKG  R AG E+F         L M DP+LYF+QRLRDEAHR
Sbjct: 493 QEILQELGVDD-VPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHR 551

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           +AI  HR +R KA   +PLDEI G+G  RKR LL  FG+ K ++R+    L ++EGIS+ 
Sbjct: 552 WAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEGISET 611

Query: 599 IACKIYNHFHKN 610
           +A  I++ FH +
Sbjct: 612 MAQSIHDFFHGS 623


>gi|254438748|ref|ZP_05052242.1| excinuclease ABC, C subunit [Octadecabacter antarcticus 307]
 gi|198254194|gb|EDY78508.1| excinuclease ABC, C subunit [Octadecabacter antarcticus 307]
          Length = 621

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 252/605 (41%), Positives = 382/605 (63%), Gaps = 14/605 (2%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+MLD   RVLYVGKA +L+ R+ +Y   + H+ RI  MIS   ++ F  T TE E
Sbjct: 25  SPGVYRMLDSQARVLYVGKARSLKNRVSNYARPSGHSARIATMISHTASMMFLTTNTETE 84

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK+LKP++N+LLRDDKSFP ILI+  H+ P + KHR +   +G+Y+GPFAS 
Sbjct: 85  ALLLEQNLIKQLKPKYNVLLRDDKSFPNILISGDHEFPRIEKHRGAKRKKGNYYGPFASA 144

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            AV +T+N+LQR F LR+C+DS +  RTRPCL +QIKRCS PC G+++   Y + V +A+
Sbjct: 145 GAVNRTLNTLQRAFLLRNCSDSEYESRTRPCLQYQIKRCSAPCVGKVAQGDYKQLVKDAE 204

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245
           +FL+G +  ++  +A  M QA+   ++E A   RDR+ AL+ +Q             D  
Sbjct: 205 RFLTGKSTEMQASLAARMQQASNDMEFERAAALRDRIKALTQVQTSQGINPRGVTEADVI 264

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           +LY +   AC+Q  F    QN G   ++ +   +   ++++  F+ QFY+D+  P  +LL
Sbjct: 265 ALYRDGGQACVQVFFIRANQNWGNRDYYPRVSGDEDASEVMQAFVGQFYSDREPPRMLLL 324

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           S   ++  L+  +  ++ G KV+I VP++GEK +++  A  NA  S  +K+S   +   +
Sbjct: 325 SHGLDDDDLMTEALSEKAGRKVEIIVPQRGEKAELVSGAARNARESLGRKMSETATQGRL 384

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L+   + F LP +P+R+E+YDNSHI G  AVG M+V G  GF KNQYRKFN+  +D+   
Sbjct: 385 LRGLKEAFDLPEVPQRVEVYDNSHIQGAFAVGAMIVAGPEGFDKNQYRKFNIQGDDLTPG 444

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD  MM+ VL RRF +L+K +          +    +WP ++++DGG GQ+SA + ++++
Sbjct: 445 DDFGMMKEVLMRRFKRLLKED---------PKRELGTWPGLLLIDGGAGQVSAVRAIMEE 495

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L V   + ++ +AKG  R  G E+F+    + + L   DP+LYF+QR+RDEAHRFAI TH
Sbjct: 496 LGV-GDVPMVGVAKGVDRDHGKEEFYRTGKQVMALQRNDPVLYFVQRMRDEAHRFAIGTH 554

Query: 546 RKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R KA   +PLD++ G+G  RKR LLQ FG+ K + R++   L +++GIS  +A  IY
Sbjct: 555 RAKRSKAIGATPLDDVPGVGATRKRALLQHFGSAKAVGRAALADLKAVDGISGNMAETIY 614

Query: 605 NHFHK 609
            +F++
Sbjct: 615 GYFNE 619


>gi|332559548|ref|ZP_08413870.1| excinuclease ABC subunit C [Rhodobacter sphaeroides WS8N]
 gi|332277260|gb|EGJ22575.1| excinuclease ABC subunit C [Rhodobacter sphaeroides WS8N]
          Length = 618

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 266/612 (43%), Positives = 373/612 (60%), Gaps = 14/612 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   +VLYVGKA NL+ R+ +Y   + H+ RI  MI +  ++ F  
Sbjct: 17  LKTLDGSPGVYRMLDAQSQVLYVGKARNLRARVSNYARPSGHSGRIARMIRETASMMFLT 76

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKPR+N+LLRDDKSFP ILI   H  P L KHR   + +GSYF
Sbjct: 77  TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEKGSYF 136

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LR+C+D+ F  RTRPCLLFQIKRCS PC G + +  Y E
Sbjct: 137 GPFASAGAVNRTLNQLQRVFLLRTCSDATFDSRTRPCLLFQIKRCSAPCVGRVPAADYAE 196

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            + +A++FL G    ++  +A  M  A+   ++E A   RDR+ AL+ +Q+         
Sbjct: 197 LIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQVQSSQGINPRGV 256

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +++     AC+Q  F    Q+ G   FF +T + +   +IL  FL QFY DK  
Sbjct: 257 AEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGAGAEEPEILEAFLAQFYDDKEP 316

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ILLS   +   L+     ++ G KV + VP++GEK +++E A  NA  S  ++++  
Sbjct: 317 PRMILLSHPVDNPDLVGQLLSERAGRKVTLGVPQRGEKAELVENAARNARESLARRMAES 376

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L    + F L   PKRIE+YDNSHI G +AVG M+V G  GF+K+QYRKFN+  
Sbjct: 377 ATQNRLLAGLAEAFELDAAPKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRG 436

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
                 DD  MM+ VL RRF +L+K +          E    +WPD++++DGG GQ+SA 
Sbjct: 437 AAGAQGDDFGMMKEVLTRRFERLLKED---------PERKTDAWPDLLLIDGGAGQVSAV 487

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           Q +L++L V++ +  I +AKG  R AG E+F         L M DP+LYF+QRLRDEAHR
Sbjct: 488 QEILQELGVDD-VPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHR 546

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           +AI  HR +R KA   +PLDEI G+G  RKR LL  FG+ K ++R+    L ++EGIS+ 
Sbjct: 547 WAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEGISET 606

Query: 599 IACKIYNHFHKN 610
           +A  I+++FH +
Sbjct: 607 MAQSIHDYFHGS 618


>gi|255262958|ref|ZP_05342300.1| excinuclease ABC, C subunit [Thalassiobium sp. R2A62]
 gi|255105293|gb|EET47967.1| excinuclease ABC, C subunit [Thalassiobium sp. R2A62]
          Length = 630

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 254/611 (41%), Positives = 381/611 (62%), Gaps = 14/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y   + H+ RI  MI     + F  
Sbjct: 28  LKTLDSSPGVYRMLDEQARVLYVGKARNLKARVSNYARPSGHSARIDRMIRNTAAMMFLT 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL+T  H  P + KHR +   +GSY+
Sbjct: 88  TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVTKDHAFPQIKKHRGAKKQKGSYY 147

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +++N LQ+ F LR+C D+ F  RTRPCLL+QIKRC+GPC G I  + Y +
Sbjct: 148 GPFASAGAVNRSLNQLQKVFLLRTCTDATFESRTRPCLLYQIKRCAGPCVGLIEPDDYAK 207

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V +A +FLSG + +++ ++A++M +A+   ++E A   RDR+ A++ +Q          
Sbjct: 208 LVDDASRFLSGKSTSVQGQLAKDMAEASENMEFERAAALRDRIRAMTQMQTQQGINPQGV 267

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +L+     AC+Q  F    QN G   ++ +   +   A+++  F+ QFY+D+  
Sbjct: 268 AEADIIALHMQNGQACVQVFFIRANQNWGNRDYYPRVGDDVDAAEVMQAFVLQFYSDREP 327

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ +L+S   ++  L+  +  ++ G KV + VP++GEK  ++  A+ NA  S  +K+S  
Sbjct: 328 PKAVLMSHGLDDEDLVIDALSQKAGRKVDVAVPQRGEKADLVGGAMRNARESLARKMSET 387

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +LK     F L   PKRIE+YDNSHI G  AVG M+V G +GF KNQYRKFN+  
Sbjct: 388 ATQTKLLKGVADAFDLAEPPKRIEVYDNSHIQGAHAVGAMIVAGPDGFEKNQYRKFNIRG 447

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +++   DD  MM+ VL RRF +L+K +          +     WPD++++DGG GQ+SA 
Sbjct: 448 DELTPGDDFGMMKEVLMRRFKRLLKED---------PDKEKSMWPDLLLIDGGAGQVSAV 498

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + ++ ++ V++ + ++ +AKG  R AG E+F     + + L   DP+LYFIQR+RDEAHR
Sbjct: 499 RQIMTEMGVDD-LAMVGVAKGEDRDAGKEEFHRTGKQVMALRHNDPVLYFIQRMRDEAHR 557

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   +PLD++ G+G  RKR LL  FG+ K + R++   L +++GIS  
Sbjct: 558 FAIGTHRAKRSKAIGATPLDDVPGVGATRKRALLAHFGSAKAVGRANLADLKAVDGISSA 617

Query: 599 IACKIYNHFHK 609
           +A  IY++FH+
Sbjct: 618 MAETIYDYFHE 628


>gi|209886325|ref|YP_002290182.1| excinuclease ABC, C subunit [Oligotropha carboxidovorans OM5]
 gi|209874521|gb|ACI94317.1| excinuclease ABC, C subunit [Oligotropha carboxidovorans OM5]
          Length = 694

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 292/612 (47%), Positives = 394/612 (64%), Gaps = 8/612 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + +  P  PGVY+ML+  G VLYVGKA N++KR+ SY   N H+ RI  MI+    +   
Sbjct: 84  AVKLAPTSPGVYRMLNEGGDVLYVGKAKNVKKRLTSYTRVNGHSARIARMIAATITVEII 143

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT  H  P L KHR + T  G Y
Sbjct: 144 STETETEALLLEANLIKQLRPRFNVLLRDDKSFPYILITSDHWAPQLVKHRGAQTRPGRY 203

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFASV AV +T+ +LQR F +RSC DS F  RTRPCLLFQIKRC+GPCTGEI    Y 
Sbjct: 204 FGPFASVGAVNRTLTALQRAFLIRSCTDSFFEGRTRPCLLFQIKRCAGPCTGEIDFPAYR 263

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             V EA  FLSG +  +K+++A  M +A+   ++E A ++RDRLAALS IQ         
Sbjct: 264 NLVREATDFLSGRSRAVKQELADEMEKASAALEFERAALYRDRLAALSAIQAQQGINPRT 323

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+++     +C++  FF  GQN G   +F + D      ++L+ FL QFY  K 
Sbjct: 324 VEEADVFAIHQEGGYSCVEVFFFRTGQNWGNRAYFPRADKSIAADEVLASFLSQFYDGKQ 383

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ +LLS + EE +LL  +   + G+KV++  P++GEKR++++ AL NA  +  +KL+ 
Sbjct: 384 PPKLVLLSHKIEEEALLASALTVKAGHKVEVATPQRGEKRELVQHALTNAREALGRKLAD 443

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +   +L    +   LP  P+RIE+YDNSHI G +AVG MVV G  GFVKNQYRKFN+ 
Sbjct: 444 AATQTRLLDGLVRALQLPRAPRRIEVYDNSHIQGTNAVGAMVVAGPEGFVKNQYRKFNIR 503

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             ++   DD AMMR VL+RRF +L+ ++E      ++ +   P WPD+VI+DGG GQL+A
Sbjct: 504 SENLTPGDDYAMMREVLQRRFKRLLTSDE---ATARQGDDDVPQWPDLVIIDGGLGQLNA 560

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
             G+ ++L V   ++++S+AKGP R AG E  F+    A+ L  RDP+LYFIQRLRDEAH
Sbjct: 561 VCGIFEELGVTG-VSLMSVAKGPDRDAGRETLFLPDRPAIKLEPRDPVLYFIQRLRDEAH 619

Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RF I +HR  R+K      L EI GIGP RKR LL+ FGT+K I R+S   L  + G+S 
Sbjct: 620 RFVIGSHRNLRRKDIREAGLQEIPGIGPARKRALLRHFGTLKEIERASLADLGKVPGVSA 679

Query: 598 KIACKIYNHFHK 609
           + A +I++ FH 
Sbjct: 680 ESARRIFDFFHP 691


>gi|316932715|ref|YP_004107697.1| excinuclease ABC subunit C [Rhodopseudomonas palustris DX-1]
 gi|315600429|gb|ADU42964.1| excinuclease ABC, C subunit [Rhodopseudomonas palustris DX-1]
          Length = 699

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 287/609 (47%), Positives = 387/609 (63%), Gaps = 7/609 (1%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+ML+    VLYVGKA N++KR+ SY        RI  MI+    +    T TE
Sbjct: 87  PTSPGVYRMLNEGRDVLYVGKAKNVKKRLASYARPTGQVLRIARMIALTVEVEVISTTTE 146

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT  H  P + KHR + +  G YFGPFA
Sbjct: 147 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 206

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  AV +TI +LQR F +RSC DS F  RTRPCLL+QI+RC+GPCTGE+    Y E V E
Sbjct: 207 SAGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCAGPCTGEVDFPGYSELVRE 266

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A  FLSG +  +K+ +A  M +A+ + ++E+A ++RDRLAALS IQ+            D
Sbjct: 267 ATDFLSGRSRAVKQLLAAEMEKASGELEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 326

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F+++ +   +C++  FF  GQN G   +F + +   T A++L  F+ QFY DKP P+ I
Sbjct: 327 VFAIHQDGGYSCVEVFFFRTGQNWGNRAYFPRAEKTFTPAEVLGAFVAQFYDDKPPPKLI 386

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           LLS E +E  LL  +   + G+KV+I VPK+GEK++++  A  NA  +  +KL+   +  
Sbjct: 387 LLSHEIDEAELLADALCVKAGHKVEIMVPKRGEKKELVTHAQTNAREALGRKLADTATQA 446

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
            +L        LP  P+RIE+YDNSHI G +AVG M+V G  GF+KNQYRKFN+    + 
Sbjct: 447 RLLDSLATTLGLPKAPQRIEVYDNSHIQGTNAVGAMIVAGPEGFIKNQYRKFNIRSEGLT 506

Query: 424 TQDDCAMMRMVLERRFSQLIK---NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
             DD AMMR VL+RRF +L     +  +     K ++   P WPD+VI+DGG+GQL+AA+
Sbjct: 507 PGDDYAMMREVLQRRFKRLAALQTDGGDAEPADKSKDDEVPQWPDLVIIDGGRGQLNAAR 566

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
             L  + + +++T++ +AKGP R AG E  F+   +A+ L  RDP+LYFIQRLRDEAHRF
Sbjct: 567 EALSGIGLTDQVTLLGVAKGPDRDAGRETLFMPDRDAIKLEPRDPVLYFIQRLRDEAHRF 626

Query: 541 AITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
            I +HR  RKK      L EI GIGP RKR LL  FGT+K I R+S   L  + GIS + 
Sbjct: 627 VIGSHRTLRKKDIREAGLQEIPGIGPTRKRALLLHFGTLKEIERASIADLGKVPGISAES 686

Query: 600 ACKIYNHFH 608
           A +I+  FH
Sbjct: 687 ARRIFEFFH 695


>gi|288941271|ref|YP_003443511.1| excinuclease ABC subunit C [Allochromatium vinosum DSM 180]
 gi|288896643|gb|ADC62479.1| excinuclease ABC, C subunit [Allochromatium vinosum DSM 180]
          Length = 610

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/612 (35%), Positives = 347/612 (56%), Gaps = 22/612 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+MLD  G VLYVGKA NL++R+ SY      T R   ++S I +I  TVT 
Sbjct: 17  DLPTGPGVYRMLDAGGTVLYVGKAKNLKRRVSSYF-GRTLTPRHARLVSLIADIDVTVTR 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE+ +IK L+PRFN+LLRDDKS+PYI +T +   P L  +R      G  FGP
Sbjct: 76  TEGEALLLESQLIKSLQPRFNVLLRDDKSYPYIQLTTQDDYPRLTFYRGPRQTDGRLFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  AV +T+  LQ+ F +R C D  FRHR+RPCL +QIKRCS PC G ++ E+Y E V
Sbjct: 136 YPSAWAVRETLQILQKLFPVRQCEDGFFRHRSRPCLQYQIKRCSAPCVGLVTPEQYAEDV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242
               KFL G    + +++   M  A+   ++E A  +RDR+ AL  +            +
Sbjct: 196 ARTAKFLDGRAGEVIDELIGAMETASAALEFERAAQYRDRIQALRRVLERQSVIGEDGDL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     ++ C+Q      G++ G   FF K  +++  + +L+ FL QFY     P+ 
Sbjct: 256 DLIACAREADVWCVQVFVVRRGRHLGNTAFFPKAPADTEESALLAGFLAQFYAMHEVPDT 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ++LS   +E  +L  +  ++ G  V++ V  +GE+ + ++ A  NA  +  Q+L ++  +
Sbjct: 316 LILSTRPDEAEILHAALAERAGRTVRLQVDVRGERARWLDMARDNARFALQQRLGSQAGY 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              L+   +   L   P+R+E +D SH  G   V   VV    G  K+ YR+FN+    +
Sbjct: 376 ARRLESLREALELADRPERMECFDISHTQGEHTVASCVVFDGEGARKSDYRRFNI--TGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A +   L RR++++ + E                 PD++++DGG+GQL+A    
Sbjct: 434 TPGDDYAALDQALTRRYTRVGQGE--------------YPIPDLILIDGGRGQLAAVDEA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFA 541
           L++L +   + ++ ++KGP R  G E+ ++   E  ++L    P ++ IQ++RDEAHRFA
Sbjct: 480 LQELGLHG-LNLVGVSKGPDRRPGAERLWLLGREVPVILPSDSPAMHLIQQIRDEAHRFA 538

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR+RR KA   S L++I G+GP R++ LL+ FG ++ + R+  + +A +EGIS+ +A
Sbjct: 539 ITGHRQRRAKARATSALEDIPGLGPKRRQRLLKHFGGLRGLERAGIDDIAGVEGISRPLA 598

Query: 601 CKIYNHFHKNTS 612
            +I+  FH++ +
Sbjct: 599 QRIHAAFHRDQA 610


>gi|23016722|ref|ZP_00056475.1| COG0322: Nuclease subunit of the excinuclease complex
           [Magnetospirillum magnetotacticum MS-1]
          Length = 624

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 274/610 (44%), Positives = 381/610 (62%), Gaps = 14/610 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+ML+  G VLYVGKA +L+KR+ +Y        RI  MI++  ++    T 
Sbjct: 24  TLTGAPGVYRMLNGKGDVLYVGKAKSLKKRVVAYTKPERMPLRIQRMIAETASMEVVTTR 83

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TEVEALLLE+N+IK L PR+NILL+DDKSFP+ILITD H  P + KHR +   +G YFGP
Sbjct: 84  TEVEALLLESNLIKSLGPRYNILLKDDKSFPHILITDDHDWPQVLKHRGARNRKGEYFGP 143

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +T+ +LQR F LRSC+DSVF  RTRPCLLFQIKRCS PC   I  + Y+  V
Sbjct: 144 FASAGAVNQTLAALQRAFLLRSCSDSVFASRTRPCLLFQIKRCSAPCVERIGRDAYLGLV 203

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            EA+ FLSG +  ++  +   M  A    +YE+A + RDR+ AL+ IQ H D        
Sbjct: 204 EEARAFLSGQSRRIQHDLTARMESAAEDMEYEAAAVFRDRIRALTRIQAHQDINPAEVEE 263

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +L+   +  CIQ  FF  G N G+  +F          +I++ FL QFY DK  P 
Sbjct: 264 ADVVALHQAGDGVCIQVFFFRSGCNYGSRAYFPIHAQGEEAPEIMAAFLGQFYADKMPPR 323

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILLS E  E  ++  +  ++ G KV ++VPK+G++ +++E A  NA  +  ++++   +
Sbjct: 324 EILLSLEPAEADIVAQALSEKAGRKVTLSVPKRGDRTRLVEHAQDNARDALGRRMAESGA 383

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            + +L    + F +   P+RIE+YDNSHI G  AVG M+V G +G +K+ YRKFN+   D
Sbjct: 384 QRKLLDGVAELFGMETPPERIEVYDNSHIQGSDAVGAMIVAGPDGLMKSAYRKFNIRSTD 443

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD AMMR VL RRF++  K +          +     WPD+ ++DGGKGQL+AA G
Sbjct: 444 LTPGDDFAMMREVLTRRFARAQKED---------PDRDRGLWPDLALIDGGKGQLNAALG 494

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           VL++L +++ + ++ IAKGP R+AG E+FF+   E + L MR P+LYF+QRLRDEAHRFA
Sbjct: 495 VLEELGIDD-VLLVGIAKGPDRNAGKERFFLAGKEPISLEMRHPVLYFLQRLRDEAHRFA 553

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I THR RR K    S LD + GIGP RK+ LL  FG+ K ++ +    L S+EGIS  +A
Sbjct: 554 IGTHRARRSKGLVQSTLDALPGIGPKRKKALLHHFGSAKAVAEAGLPDLESVEGISHAMA 613

Query: 601 CKIYNHFHKN 610
            KI+++FH  
Sbjct: 614 KKIHDYFHPE 623


>gi|83941423|ref|ZP_00953885.1| excinuclease ABC subunit C [Sulfitobacter sp. EE-36]
 gi|83847243|gb|EAP85118.1| excinuclease ABC subunit C [Sulfitobacter sp. EE-36]
          Length = 621

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 263/611 (43%), Positives = 382/611 (62%), Gaps = 14/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     H+ RI  MIS   ++ F  
Sbjct: 19  LKTIDGSPGVYRMLDSESRVLYVGKARNLRARVSNYARPTGHSGRIARMISNTASMMFLT 78

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL+T  H  P + KHR +   +G+Y+
Sbjct: 79  TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVTATHDYPQIKKHRGAKKEKGNYY 138

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LR C+D++F  R+RPCL  QIKRCS PC G+IS E+Y +
Sbjct: 139 GPFASAGAVNRTLNQLQRVFLLRDCSDAMFESRSRPCLQHQIKRCSAPCVGKISPEEYRK 198

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V +A+KFL+G + +++ ++A  M +A+   ++E A   RDR+ AL+ +Q          
Sbjct: 199 TVQDAEKFLNGKSTDIQGRLATEMAEASEAMEFERAAALRDRIKALTQVQTAQGINPQGV 258

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +L+ ++  AC+Q  F    QN G   ++ +   +   A++L  F+ QFY  +  
Sbjct: 259 AEADIIALHLDQGQACVQVFFIRANQNWGNRDYYPRVGPDVDAAEVLEAFIGQFYDTREP 318

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++LS + E   L+  +   + G KV I VPK+GEK ++++ AL NA  S  +KL+  
Sbjct: 319 PRQLILSNDIESPDLMVEALSGKLGRKVDIVVPKRGEKAELVDGALRNARESLARKLAET 378

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +LK     F LP  P+RIE+YDNSHI G +AVG M+V G +G +KNQYRKFN+  
Sbjct: 379 ATQTNLLKGIADAFDLPAPPQRIEVYDNSHIQGTNAVGGMIVAGPDGMMKNQYRKFNIRG 438

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +D+   DD  MM+ VL RRF +L+K +          +     WPD++++DGG GQ+SA 
Sbjct: 439 DDLTPGDDFGMMKEVLTRRFKRLLKED---------PDRKLGMWPDLLLIDGGAGQVSAV 489

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++++  VE+ I ++ +AKG  R AG E+F+      + L   DP+LYFIQRLRDEAHR
Sbjct: 490 ASIMREYGVED-IPMVGVAKGVDRDAGKEEFYRVGKRPMALRHNDPVLYFIQRLRDEAHR 548

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   +PLD++ G+G  RKR LL  FG+ K + R++   L +++G+S  
Sbjct: 549 FAIGTHRAKRAKAVGATPLDDVPGVGAARKRALLAHFGSAKAVGRANLSDLKAVDGVSVA 608

Query: 599 IACKIYNHFHK 609
           +A +IY  FH+
Sbjct: 609 LAERIYAFFHE 619


>gi|83854900|ref|ZP_00948430.1| excinuclease ABC subunit C [Sulfitobacter sp. NAS-14.1]
 gi|83842743|gb|EAP81910.1| excinuclease ABC subunit C [Sulfitobacter sp. NAS-14.1]
          Length = 621

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 263/611 (43%), Positives = 383/611 (62%), Gaps = 14/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y   + H+ RI  MIS   ++ F  
Sbjct: 19  LKTIDGSPGVYRMLDSESRVLYVGKARNLRARVSNYARPSGHSGRIARMISNTASMMFLT 78

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL+T  H  P + KHR +   +G+Y+
Sbjct: 79  TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVTATHDYPQIKKHRGAKKEKGNYY 138

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LR C+D++F  R+RPCL  QIKRCS PC G+IS E+Y +
Sbjct: 139 GPFASAGAVNRTLNQLQRVFLLRDCSDAMFESRSRPCLQHQIKRCSAPCVGKISPEEYRK 198

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V +A+KFL+G + +++ ++A  M +A+   ++E A   RDR+ AL+ +Q          
Sbjct: 199 TVQDAEKFLNGKSTDIQGRLATEMAEASEAMEFERAAALRDRIKALTQVQTAQGINPQGV 258

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +L+ ++  AC+Q  F    QN G   ++ +   +   A++L  F+ QFY  +  
Sbjct: 259 AEADIIALHLDQGQACVQVFFIRANQNWGNRDYYPRVGPDVDAAEVLEAFIGQFYDTREP 318

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++LS + E   L+  +   + G KV I VPK+GEK ++++ AL NA  S  +KL+  
Sbjct: 319 PRQLILSNDIESPDLMVEALSGKLGRKVDIVVPKRGEKAELVDGALRNARESLARKLAET 378

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +LK     F LP  P+RIE+YDNSHI G +AVG M+V G +G +KNQYRKFN+  
Sbjct: 379 ATQTNLLKGIADAFDLPAPPQRIEVYDNSHIQGTNAVGGMIVAGPDGMMKNQYRKFNIRG 438

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +D+   DD  MM+ VL RRF +L+K +          +     WPD++++DGG GQ+SA 
Sbjct: 439 DDLTPGDDFGMMKEVLTRRFKRLLKED---------PDRKLGMWPDLLLIDGGAGQVSAV 489

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++++  VE+ I ++ +AKG  R AG E+F+      + L   DP+LYFIQRLRDEAHR
Sbjct: 490 ASIMREYGVED-IPMVGVAKGVDRDAGKEEFYRVGERPMALRHNDPVLYFIQRLRDEAHR 548

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   +PLD++ G+G  RKR LL  FG+ K + R++   L +++G+S  
Sbjct: 549 FAIGTHRAKRAKAVGATPLDDVPGVGAARKRALLAHFGSAKAVGRANLSDLKAVDGVSVA 608

Query: 599 IACKIYNHFHK 609
           +A +IY  FH+
Sbjct: 609 LAERIYAFFHE 619


>gi|163745640|ref|ZP_02153000.1| excinuclease ABC subunit C [Oceanibulbus indolifex HEL-45]
 gi|161382458|gb|EDQ06867.1| excinuclease ABC subunit C [Oceanibulbus indolifex HEL-45]
          Length = 622

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 265/611 (43%), Positives = 383/611 (62%), Gaps = 14/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ SY     H+ RI+ MI+   ++ F  
Sbjct: 20  LKSLDSSPGVYRMLDSESRVLYVGKARNLRARVSSYARPTGHSGRISRMIANTASMMFLT 79

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL+T  H  P + KHR +   +GSY+
Sbjct: 80  TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVTADHDYPQIKKHRGAKKEKGSYY 139

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LR C++S+F  RTRPCL  QIKRCS PC G+IS+E Y +
Sbjct: 140 GPFASAGAVNRTLNQLQRVFLLRDCSNSMFDSRTRPCLQHQIKRCSAPCVGKISAEDYRQ 199

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            V +A++FLSG +  ++ ++AR+M +A+   ++E A   RDR+ AL+ +Q          
Sbjct: 200 TVRDAERFLSGKSTEIQGRLARDMAEASEAMEFERAAALRDRIKALTQVQTAQGINPQGV 259

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           N  D  +L+     AC+Q  F    QN G   ++ +  ++   A++L  F+ QFY  +  
Sbjct: 260 NEADIIALHMEGGQACVQVFFIRANQNWGNRDYYPRVGADVDAAEVLEAFIGQFYDTREP 319

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++LS E E   L+  +   + G KV++ VP++GEK ++++ AL NA  S  +K++  
Sbjct: 320 PRQLILSNEIENPDLMAEALSGKIGRKVELLVPQRGEKAELVDGALRNARESLARKMAET 379

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L+   + F LP  P+RIE+YDNSHI G +AVG M+V G  G +KNQYRKFN+  
Sbjct: 380 ATQTKLLQGLVEAFDLPRSPERIEVYDNSHIQGTNAVGAMIVAGPEGMMKNQYRKFNIRG 439

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +D+   DD  MM+ VL RRF +LIK +          + S   WPD++++DGG GQ+SA 
Sbjct: 440 DDLTPGDDFGMMKEVLHRRFKRLIKED---------PDRSRGLWPDLLLIDGGAGQVSAV 490

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++ +  VE+ I ++ +AKG  R AG E+F       + L   DP+LYF+QRLRDEAHR
Sbjct: 491 ASIMAQHGVED-IPMVGVAKGIDRDAGKEEFHRVGKRVMALRHNDPVLYFVQRLRDEAHR 549

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R K    +PLD++ G+G  RKR LL  FG+ K + R++   L ++EG+S  
Sbjct: 550 FAIGTHRAKRAKGISATPLDDVPGVGAARKRALLAHFGSAKAVGRANLSDLKAVEGVSDA 609

Query: 599 IACKIYNHFHK 609
           +A  IY +FH+
Sbjct: 610 LAETIYGYFHE 620


>gi|254509746|ref|ZP_05121813.1| excinuclease ABC, C subunit [Rhodobacteraceae bacterium KLH11]
 gi|221533457|gb|EEE36445.1| excinuclease ABC, C subunit [Rhodobacteraceae bacterium KLH11]
          Length = 624

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/610 (43%), Positives = 379/610 (62%), Gaps = 15/610 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     H+ RI  MI+   ++ F  
Sbjct: 23  AKTLDNSPGVYRMLDADSRVLYVGKARNLKARVSNYTRP-GHSGRIEKMIAATASMMFLT 81

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+   H  P + KHR +   +G+YF
Sbjct: 82  TRTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHAFPQIKKHRGAKKEKGAYF 141

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQ+ F LR+C+DS+F  RTRPCLL+QIKRCSGPC G I  ++Y E
Sbjct: 142 GPFASAGAVNRTLNQLQKAFLLRNCSDSMFESRTRPCLLYQIKRCSGPCVGLIPEDEYRE 201

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            V +A++FLSG +  ++E +A  M  A+   ++E A   RDR+ AL+ +Q          
Sbjct: 202 SVKDAERFLSGRSTKVQEDLATQMMAASEAMEFERAAGLRDRIRALTQVQTSQGINPRGV 261

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D   LY +   AC+Q  F    QN G   F+ +   + + A+ +  FL QFY +K  
Sbjct: 262 TEADVIGLYMDSGQACVQVFFIRANQNWGNRDFYPRVGPDVSPAEAMEAFLGQFYDNKEP 321

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++LS+  E   L++ +  ++ G KV+I VP++GEK+++I  AL NA  S  +++S  
Sbjct: 322 PRQLILSDAIENADLMQAALSEKAGRKVEILVPQRGEKQELIAGALRNARESLARRMSES 381

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L+   + F L   P RIE+YDNSHI G +AVG M+V G  G++KN YRKFN+  
Sbjct: 382 ATQAKLLRGVAEAFDLDTPPGRIEVYDNSHIQGTNAVGGMIVAGPEGYMKNAYRKFNIRG 441

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +D+   DD  MM+ VL RRF++L K +          +     WPD++++DGG GQ+SA 
Sbjct: 442 DDLTPGDDFGMMKEVLTRRFTRLQKED---------PDREKGLWPDLLLIDGGAGQVSAV 492

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++ +  VE+ I ++ +AKG  R  G E+F         L   DP+LYFIQRLRDEAHR
Sbjct: 493 HEIMAQYGVED-IPMVGVAKGVDRDHGKEEFHRIGQRPFALKRNDPVLYFIQRLRDEAHR 551

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   +PLDEI G+G  RKR LL  FG+ K +SR++   L ++EGIS  
Sbjct: 552 FAIGTHRAKRAKAVGATPLDEIPGVGAARKRALLTHFGSAKAVSRANLADLKAVEGISAG 611

Query: 599 IACKIYNHFH 608
           +A K+Y+ FH
Sbjct: 612 LAQKVYDFFH 621


>gi|163868037|ref|YP_001609241.1| excinuclease ABC subunit C [Bartonella tribocorum CIP 105476]
 gi|161017688|emb|CAK01246.1| excinuclease ABC subunit C [Bartonella tribocorum CIP 105476]
          Length = 661

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 305/612 (49%), Positives = 410/612 (66%), Gaps = 7/612 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M+   G +LYVGKA NL+KR+ +Y     H +RIT MI    ++ F VT 
Sbjct: 49  HLPHKPGVYRMIGENGDILYVGKARNLKKRVSNYAREQGHNNRITRMIRATYHMEFIVTH 108

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IKRL P FN+LLRDDKSFPYI+IT+ H+ PALYKHR + T +  YFGP
Sbjct: 109 TETEALLLEANLIKRLHPHFNVLLRDDKSFPYIMITNDHRAPALYKHRGARTQKAHYFGP 168

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +TI+ LQR F LR+C D++F +RTRPCLL QIKRCS PCT EI+   Y E V
Sbjct: 169 FASASAVTQTIHVLQRAFLLRTCTDTIFENRTRPCLLHQIKRCSAPCTHEINDIDYKELV 228

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            EAK FLSG + ++K  + + M++A    D+E A  +RDRL+ALSHIQ+H          
Sbjct: 229 REAKAFLSGKDQSVKNDMVQAMHKAAENLDFEQAASYRDRLSALSHIQSHQGINPQTIKE 288

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F++   + + CIQ  FF  GQN G   +F K D   +  +IL+ FL QFY DKP P+
Sbjct: 289 ADVFAIAQKEGMTCIQVFFFRMGQNWGNRAYFPKADPSFSRTEILASFLTQFYDDKPLPK 348

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
           +ILLSEE EE +LL  +   +  +K+ +++PKQGE++ ++  A +NA  +   KL+   +
Sbjct: 349 SILLSEEIEEKTLLTEALSLKANHKISLSLPKQGERKTLVNHAYLNAQEALEHKLAETAT 408

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
           H  +L+   + F LP  P+RIE+YDNSHIMG ++VG M+V G+ GFVKNQYRKFN+   D
Sbjct: 409 HTKLLQGLAETFQLPFPPRRIEVYDNSHIMGTNSVGAMIVAGQMGFVKNQYRKFNIRSTD 468

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFH---PKKQEYSFPSWPDVVILDGGKGQLSA 478
           +   DD  MM+ V++RRFS+LIK  +  N +     ++   FP WPD++++DGG+GQ+++
Sbjct: 469 ITPGDDFGMMKEVIKRRFSRLIKEHDLPNKNHDIHNQENDLFPIWPDLILIDGGEGQINS 528

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
              +L +L + N IT++ IAKG  R AG E+FF+K         RDPILYF+QRLRDEAH
Sbjct: 529 VHTILTELQLNNLITVVGIAKGVDRHAGRERFFIKGTPPFTFPPRDPILYFLQRLRDEAH 588

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
            FAI THR +RKKA   +PLDEI  IGP RKR LL  FG+ K ++ +S E L  + GIS 
Sbjct: 589 HFAIGTHRIKRKKATFKNPLDEIENIGPTRKRALLHHFGSAKAVADASLEDLKKVTGISA 648

Query: 598 KIACKIYNHFHK 609
            IA KI+NHFH+
Sbjct: 649 AIAQKIHNHFHE 660


>gi|114320518|ref|YP_742201.1| excinuclease ABC subunit C [Alkalilimnicola ehrlichii MLHE-1]
 gi|119367622|sp|Q0A8X6|UVRC_ALHEH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|114226912|gb|ABI56711.1| Excinuclease ABC subunit C [Alkalilimnicola ehrlichii MLHE-1]
          Length = 611

 Score =  568 bits (1464), Expect = e-160,   Method: Composition-based stats.
 Identities = 232/613 (37%), Positives = 362/613 (59%), Gaps = 22/613 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + + PGVY+M+D  G VLYVGKA NL+KR+ SY   +  + RI  M++Q+ +I+ TVT 
Sbjct: 16  SLTQRPGVYRMVDGRGEVLYVGKARNLKKRVASYFTRSRKSARIELMLTQVQDIQVTVTH 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LE  +IK L+PR+N+LLRDDKS+P+I ++     P L  HR +    G +FGP
Sbjct: 76  TEAEALILENTLIKELRPRYNVLLRDDKSYPWIYLSSHQDFPRLSFHRGARKGPGRWFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +T+N+LQ+ F +R C DS F +R+RPCL  QIKRC+ PC G IS E Y E V
Sbjct: 136 FPSGHAVRETLNTLQKVFRIRQCQDSFFSNRSRPCLQHQIKRCTAPCVGYISREAYQEDV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242
             A  FL G ++ + E++   M  A+ + ++E+A  +RDR+ AL  +Q           +
Sbjct: 196 RHAVLFLEGRSNQVIEELGARMEAASERLEFEAAAQYRDRIQALQAVQERQYIVGEKGDL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +   +   AC+   FF  G+N G   F+ +    +  A++L+ FL ++Y  +  P  
Sbjct: 256 DVIACVSDGVTACVTVFFFRQGRNLGNKVFYPRIPEGADEAEVLAAFLARYYIGRKAPPE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +++S    E  +L  +  ++ G++V++T   + E+R+ +E AL NA  + T + ST+   
Sbjct: 316 LVISHTIPEQKVLGEALSRESGHRVRVTHSVRKERRRWLEMALTNARHALTARTSTQAMA 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              L+       LP +P+RIE +D SH  G + V   VV  ++G +K+ YR+FN+    +
Sbjct: 376 LHRLEALQDALQLPALPERIECFDISHTRGEATVAACVVFNQDGPLKSDYRRFNIRG--I 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  L RR+ +L K E                 PD++++DGGKGQ++ A+ V
Sbjct: 434 TPGDDYAAMRQALSRRYQRLKKGE--------------GVLPDILLIDGGKGQVAQAEAV 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFV--KKGEALVLNMRDPILYFIQRLRDEAHRF 540
           L++L V++ + ++ IAKGP+R  G E   +  + G    L    P L  +Q++RDEAHRF
Sbjct: 480 LEELQVDD-VYLVGIAKGPERRPGEETLILSDEDGREKTLGPDAPALQLLQQVRDEAHRF 538

Query: 541 AITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI  HR++R KA   S L++I G+GP R++ LL+ FG +K ++R+  E LA   GIS+ +
Sbjct: 539 AIAGHRQQRGKARTRSALEDIPGLGPKRRQALLRHFGGLKAVARAGVEDLARTPGISRAL 598

Query: 600 ACKIYNHFHKNTS 612
           A K+Y+H+H ++ 
Sbjct: 599 AQKVYDHYHGDSG 611


>gi|89070175|ref|ZP_01157503.1| excinuclease ABC subunit C [Oceanicola granulosus HTCC2516]
 gi|89044191|gb|EAR50342.1| excinuclease ABC subunit C [Oceanicola granulosus HTCC2516]
          Length = 617

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 267/612 (43%), Positives = 383/612 (62%), Gaps = 15/612 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y   +  H+ RI  MI +  ++ F 
Sbjct: 14  LKTLDSSPGVYRMLDDQSRVLYVGKARNLKARVSNYSRPSPQHSARIARMIRETASMMFL 73

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL++ +H  P + KHR +   +GSY
Sbjct: 74  TTRTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVSREHDFPQIKKHRGAKKEKGSY 133

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFAS  AV +T+N LQ+ F LR+C+DS F  RTRPCLL+QIKRCS PC G I    Y 
Sbjct: 134 YGPFASAGAVNRTLNQLQKVFLLRNCSDSTFETRTRPCLLYQIKRCSAPCVGYIDKAGYE 193

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             V +A++FLSG   +++ ++A+ M +A+   ++E A   RDR+ AL+ +Q+        
Sbjct: 194 ALVGDAQRFLSGKTTSVQNQLAQQMQEASEAMEFERAAALRDRIRALTQVQSSQGINPQT 253

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            +  D  +L+ +   AC+Q  F    QN G   ++ +   E   A+I+  F+ QFY ++ 
Sbjct: 254 TSEADVIALHVDGGQACVQVFFIRSNQNWGNHDYYPRISGEEDPAEIIEAFVGQFYANRE 313

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  +LLS   +E  L+  +  +Q G KV+I+VP++GEK +++  AL NA  S  +K+S 
Sbjct: 314 PPRLLLLSHGLDEPDLMAQALCEQRGGKVEISVPQRGEKAELVGSALRNARESLGRKMSE 373

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +   +LK     F LP +P+RIE+YDNSHI G  AVG M+V G  G  KNQYRKFN+ 
Sbjct: 374 TATQGRLLKGLADAFELPAVPQRIEVYDNSHIQGAYAVGAMIVAGPEGLEKNQYRKFNIR 433

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            +++   DD  MM+ VL RRF +L+K +          +    +WPD++++DGG GQ+SA
Sbjct: 434 GDELTPGDDFGMMKEVLTRRFKRLLKED---------PDRQSGTWPDLLLIDGGAGQVSA 484

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
              ++ +L VE+ I +I +AKG  R  G E+F         L   DP+LYF+QRLRDEAH
Sbjct: 485 VHAIMAELGVED-IPMIGVAKGVDRDLGKEEFHRTGRTVKALRHNDPVLYFVQRLRDEAH 543

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI THR +R KA   +PLD+I G+G  RKR LL  FG+ K + R++   L +++GIS+
Sbjct: 544 RFAIGTHRAKRAKAVSANPLDDIAGVGATRKRALLAHFGSAKAVGRAALADLKAVDGISE 603

Query: 598 KIACKIYNHFHK 609
            +A KIY HFH+
Sbjct: 604 TLAEKIYAHFHE 615


>gi|107102107|ref|ZP_01366025.1| hypothetical protein PaerPA_01003156 [Pseudomonas aeruginosa PACS2]
 gi|116050572|ref|YP_790609.1| excinuclease ABC subunit C [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891335|ref|YP_002440202.1| excinuclease ABC subunit C [Pseudomonas aeruginosa LESB58]
 gi|254235571|ref|ZP_04928894.1| excinuclease ABC subunit C [Pseudomonas aeruginosa C3719]
 gi|254241018|ref|ZP_04934340.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 2192]
 gi|122259695|sp|Q02N77|UVRC_PSEAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226732392|sp|B7V4X6|UVRC_PSEA8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|115585793|gb|ABJ11808.1| excinuclease ABC subunit C [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167502|gb|EAZ53013.1| excinuclease ABC subunit C [Pseudomonas aeruginosa C3719]
 gi|126194396|gb|EAZ58459.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 2192]
 gi|218771561|emb|CAW27329.1| excinuclease ABC subunit C [Pseudomonas aeruginosa LESB58]
          Length = 608

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 216/610 (35%), Positives = 339/610 (55%), Gaps = 24/610 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   ++LYVGKA +L+KR+ SY   +    +   ++++I  +  T+T  E 
Sbjct: 16  NRPGVYRMFDADAKLLYVGKAKSLKKRLASYFRKSGLAPKTAALVARIAQVETTITANET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE  +IK  +P +NILLRDDKS+P++ ++ + + P L  HR +   +G YFGP+ S
Sbjct: 76  EALLLEQTLIKEWRPPYNILLRDDKSYPFVFLSSEDEYPRLSLHRGAKKRKGRYFGPYPS 135

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             A+ +++N LQ+ F +R C DS FR+RTRPCL +QIKRC GPC G +S E+Y E V  +
Sbjct: 136 AGAIRESLNLLQKAFLVRQCEDSYFRNRTRPCLQYQIKRCKGPCVGLVSPEEYAEDVRHS 195

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCF 245
             FL G ++ L +++   M QA ++ D+E A   RD++A L  +Q+          +D  
Sbjct: 196 VMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILRRVQDQQSMEGGNGDVDIV 255

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPEN 302
           +       AC+       G+  G+  FF +   E    ++L  FL Q+Y    ++  P  
Sbjct: 256 AAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVLLAFLGQYYLSHQERDLPAE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ++++   E+  +L  +  +  G +++I+   +G + +  + A+ NA ++   +L+     
Sbjct: 316 LIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQLAVTNAEQALGARLANRQHV 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L   P+R+E +D SH  G + V   VV G  G +K+ YR++N+    V
Sbjct: 376 AARFEALAEALDLAEPPQRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--V 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A M   L RRFS+L   E                 PD++++DGGKGQL+ AQ V
Sbjct: 434 TAGDDYAAMHQALTRRFSRLKDGE--------------GKMPDILLVDGGKGQLAMAQEV 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541
           L++L V   I ++ +AKG  R  G+E  ++        L    P L+ IQ++RDEAHRFA
Sbjct: 480 LQELAVAGLI-LLGVAKGVTRKPGLETLYLNDASHEFTLPADSPALHLIQQIRDEAHRFA 538

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR RR KA   S L+++ G+GP R+R LL+ FG ++ +SR+S + LA   GISKK+A
Sbjct: 539 ITGHRARRGKARRTSTLEDVPGVGPKRRRDLLKHFGGLQELSRASIDELAKAPGISKKLA 598

Query: 601 CKIYNHFHKN 610
            +IY   H  
Sbjct: 599 EQIYAVLHSE 608


>gi|146342875|ref|YP_001207923.1| excinuclease ABC subunit C [Bradyrhizobium sp. ORS278]
 gi|146195681|emb|CAL79708.1| excinuclease ABC subunit C [Bradyrhizobium sp. ORS278]
          Length = 688

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 296/611 (48%), Positives = 391/611 (63%), Gaps = 7/611 (1%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCT 65
           P  PGVY+ML+ A  VLYVGKA N++KR+ SY  +N     RI  MI+    +    T T
Sbjct: 80  PTSPGVYRMLNAAHDVLYVGKAKNVKKRLASYARANAPLPARILRMIAATVTVEIVSTTT 139

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLEAN+IK+LKPRFN+ LRDDKSFPYILIT  H  P + KHR + +  G YFGPF
Sbjct: 140 ETEALLLEANLIKQLKPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPF 199

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
           AS  AV +TI +LQR F +RSC DS F  RTRPCLL QI+RC+GPCT EI    Y E V 
Sbjct: 200 ASAGAVNRTITALQRAFLIRSCTDSFFESRTRPCLLHQIRRCAGPCTQEIDFPGYSELVR 259

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           EA  FLSG +  +K  +A  M +A+ + ++E+A ++RDRLAALS I +            
Sbjct: 260 EATDFLSGRSQAVKALLASEMEKASAELEFETAAVYRDRLAALSAISSQQGINPRTVEEA 319

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+++     +C++  FF  GQN G   +F + +   T  ++LS FL QFY DKP P  
Sbjct: 320 DVFAIHQEGGFSCVEVFFFRTGQNWGNRAYFPRAEKTFTQEEVLSAFLSQFYDDKPPPRL 379

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILLS E EE  LL  +   + G+KV+++ PK+GEK+ ++  AL NA  +  +KL+   + 
Sbjct: 380 ILLSHEIEEAELLAEALCVKAGHKVEVSCPKRGEKKDLVTHALTNAREALGRKLADTATQ 439

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
             +L+  T    LP +PKRIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+    +
Sbjct: 440 SRLLEAMTTTLGLPQVPKRIEVYDNSHIQGTNAVGAMIVAGPDGFMKNQYRKFNIKSEGL 499

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD AMM+ VL+RRF +L+   E  +     +E   P WPD+VI+DGG+GQL+A + +
Sbjct: 500 TPGDDYAMMKEVLQRRFKRLVAPSEK-DVARAAKEDDVPQWPDLVIIDGGRGQLNAVREI 558

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
             +L V   + ++S+AKGP R AG E  F+ + EA+ L  RDP+LYFIQRLRDEAHRF I
Sbjct: 559 FTELGV-GNVALMSVAKGPDRDAGRETLFIPEREAIKLEPRDPVLYFIQRLRDEAHRFVI 617

Query: 543 TTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
            +HRK RKK      L EI GIGP RKR LL  FGT+K I R+S   L  + G+S + A 
Sbjct: 618 GSHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASIADLGKVPGVSAESAR 677

Query: 602 KIYNHFHKNTS 612
           KI+ +FH N S
Sbjct: 678 KIFEYFHSNAS 688


>gi|330720119|gb|EGG98525.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC2047]
          Length = 608

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/614 (36%), Positives = 358/614 (58%), Gaps = 25/614 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++   PGVYQMLD AG+VLYVGKA NL+ R+ SY  +   + +   ++++  +++ TVT 
Sbjct: 12  ELTRRPGVYQMLDDAGKVLYVGKAKNLKNRVSSYFRNTGLSIKTQSLMAKAVDVQVTVTA 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK LKP +NILLRDDKS+P+I +TD+H+ P+L  HR +      YFGP
Sbjct: 72  SETEALLLEQNLIKSLKPPYNILLRDDKSYPFIFLTDQHEYPSLGLHRGAKRKNVRYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V AV +T++ LQ++F +R C +S F++R+RPCL +QI+RC  PC   IS + Y E V
Sbjct: 132 FPNVSAVRETLSLLQKSFKVRQCDESHFKNRSRPCLQYQIERCKAPCVEYISKQAYAEDV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC 244
              + FL G +  +  ++   M QA+   D+E A   RD++  L  +Q       +  D 
Sbjct: 192 RHTRMFLEGKDREIITELTTQMEQASAALDFEKAAELRDQVIHLRRVQEQQYVSGHSGDV 251

Query: 245 FSLY--HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKP 298
             +    +    C+Q  F   G+  G+ T++ K +  S+ A++LS F+ QFY        
Sbjct: 252 DVVAGLVSPMGICVQVLFIRAGRILGSRTYYPKVNMVSSLAELLSGFIPQFYLAGSAQHQ 311

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ ++L+ E E+ ++L  +  +   +KV++T   +G++ + ++ A+ NA ++   + ++
Sbjct: 312 IPKEVILNAELEDEAMLADALAQSASHKVQLTSRVRGDRARWLQLAINNAEQNLQGRHAS 371

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
            + +   L        L   PKR+E +D SH  G S V   VV  +NG +K+ YR+FN+ 
Sbjct: 372 NLDYAGRLTALQAALELSESPKRMECFDISHSSGESTVASCVVFDDNGPLKSDYRRFNI- 430

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            + +   DD A M+  L+RR+ +L   E  L              PD++ +DGGKGQL  
Sbjct: 431 -SGITGGDDYAAMQQALKRRYKRLKSGEGKL--------------PDILFIDGGKGQLRM 475

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL +L++ N + ++ +AKG  R AG+E  F+  + + +VL    P L+ IQ +RDEA
Sbjct: 476 AEDVLAELDI-NGVLLVGVAKGVTRKAGLESLFMAGRSDEIVLPPDSPALHLIQHIRDEA 534

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT+HR+ R K    SPL+ I G+GP R+R LL  FG ++ + R+S E +A + GIS
Sbjct: 535 HRFAITSHRQARGKTRRTSPLESIPGVGPKRRRELLTFFGGIQEVERASAEEIAKVPGIS 594

Query: 597 KKIACKIYNHFHKN 610
           K +A +IY      
Sbjct: 595 KSMAEEIYASLRNE 608


>gi|15597781|ref|NP_251275.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PAO1]
 gi|21264128|sp|Q9I0Q1|UVRC_PSEAE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|9948648|gb|AAG05973.1|AE004687_2 excinuclease ABC subunit C [Pseudomonas aeruginosa PAO1]
          Length = 608

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 216/610 (35%), Positives = 339/610 (55%), Gaps = 24/610 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   ++LYVGKA +L+KR+ SY   +    +   ++++I  +  T+T  E 
Sbjct: 16  NRPGVYRMFDAEAKLLYVGKAKSLKKRLASYFRKSGLAPKTAALVARIAQVETTITANET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE  +IK  +P +NILLRDDKS+P++ ++ + + P L  HR +   +G YFGP+ S
Sbjct: 76  EALLLEQTLIKEWRPPYNILLRDDKSYPFVFLSSEDEYPRLSLHRGAKKRKGRYFGPYPS 135

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             A+ +++N LQ+ F +R C DS FR+RTRPCL +QIKRC GPC G +S E+Y E V  +
Sbjct: 136 AGAIRESLNLLQKAFLVRQCEDSYFRNRTRPCLQYQIKRCKGPCVGLVSPEEYAEDVRHS 195

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCF 245
             FL G ++ L +++   M QA ++ D+E A   RD++A L  +Q+          +D  
Sbjct: 196 VMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILRRVQDQQSMEGGNGDVDIV 255

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPEN 302
           +       AC+       G+  G+  FF +   E    ++L  FL Q+Y    ++  P  
Sbjct: 256 AAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVLLAFLGQYYLSHQERDLPAE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ++++   E+  +L  +  +  G +++I+   +G + +  + A+ NA ++   +L+     
Sbjct: 316 LIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQLAVTNAEQALGARLANRQHV 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L   P+R+E +D SH  G + V   VV G  G +K+ YR++N+    V
Sbjct: 376 AARFEALAEALDLAEPPQRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--V 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A M   L RRFS+L   E                 PD++++DGGKGQL+ AQ V
Sbjct: 434 TAGDDYAAMHQALTRRFSRLKDGE--------------GKMPDILLVDGGKGQLAMAQEV 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541
           L++L V   I ++ +AKG  R  G+E  ++        L    P L+ IQ++RDEAHRFA
Sbjct: 480 LQELAVAGLI-LLGVAKGVTRKPGLETLYLNDASHEFTLPADSPALHLIQQIRDEAHRFA 538

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR RR KA   S L+++ G+GP R+R LL+ FG ++ +SR+S + LA   GISKK+A
Sbjct: 539 ITGHRARRGKARRTSTLEDVPGVGPKRRRDLLKHFGGLQELSRASIDELAKAPGISKKLA 598

Query: 601 CKIYNHFHKN 610
            +IY   H  
Sbjct: 599 EQIYAVLHSE 608


>gi|298292426|ref|YP_003694365.1| excinuclease ABC, C subunit [Starkeya novella DSM 506]
 gi|296928937|gb|ADH89746.1| excinuclease ABC, C subunit [Starkeya novella DSM 506]
          Length = 687

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 293/632 (46%), Positives = 388/632 (61%), Gaps = 26/632 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + +  P  PGVY+M+   G VLYVGKA ++++RI +Y      T RI  M++    + F 
Sbjct: 53  AIKHAPNGPGVYRMIGPDGGVLYVGKAKSIKRRIVAYTRPAGLTARIMRMVAATAEMEFV 112

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEAN+IK+L+PRFN+LLRDDKSFPYILIT  H  P + KHR +    G Y
Sbjct: 113 STGTETEALLLEANLIKQLRPRFNVLLRDDKSFPYILITRDHVSPQITKHRGARNRPGDY 172

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFASV AV +TIN+LQ+ F +RSC+DS +  RTRPCLLFQIKRC+GPCTGE+S   Y 
Sbjct: 173 YGPFASVWAVNRTINALQKAFLVRSCSDSFYEARTRPCLLFQIKRCAGPCTGEVSHTDYA 232

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E+V EA+ FLSG +  +KE++A  M +A+   ++E A   RDRLAALS +Q         
Sbjct: 233 EYVREARDFLSGKSRAVKEQMAHEMQEASEALEFERAAALRDRLAALSAVQGTQGINPRS 292

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+++      C+Q  FF  GQN G    + + D      ++L  FL QFY DKP
Sbjct: 293 VEEADVFAIHQEGGATCVQVFFFRTGQNWGNHALYPRADRALEPGEVLESFLAQFYEDKP 352

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
           CP  ILLS +  E  LLE +   + G++V+I  PK+GEKR+++E AL NA  +  +KL+ 
Sbjct: 353 CPRLILLSHDVAERELLEEALSTRAGHRVEIATPKRGEKRELVEHALQNAREALGRKLAE 412

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             S   +L +  + F L   PKRIE+YDNSHIMG +AVG M+V G  GF K+QYRKFN+ 
Sbjct: 413 SASQARLLDELGRAFGLEQTPKRIEVYDNSHIMGTNAVGGMIVAGPEGFAKSQYRKFNIR 472

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENL---------------------NFHPKKQE 457
             D+   DD  MMR VL RRFS+L++                                 +
Sbjct: 473 SADLTPGDDYGMMREVLMRRFSRLLRESPKPVVTVATDGNDMADDATGDVQDVTEDATSD 532

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
            +  +WPD+V++DGG GQL AAQ  L +L V + + ++ +AKGP R AG E F+ +  E 
Sbjct: 533 AASSAWPDLVLIDGGPGQLKAAQETLAELGVSD-VPLVGVAKGPDRDAGRETFYQQGREP 591

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFG 576
             L  RDP+LYF+QRLRDEAHRFAI +HR RRKK    S L EI GIGP RKR LL  FG
Sbjct: 592 FRLEPRDPVLYFVQRLRDEAHRFAIGSHRARRKKDIAQSGLQEIPGIGPTRKRALLHHFG 651

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           T+K I R+S   L  + G++   A  +Y+ FH
Sbjct: 652 TLKAIERASLADLEGVPGVNAATARAVYDFFH 683


>gi|289208765|ref|YP_003460831.1| excinuclease ABC, C subunit [Thioalkalivibrio sp. K90mix]
 gi|288944396|gb|ADC72095.1| excinuclease ABC, C subunit [Thioalkalivibrio sp. K90mix]
          Length = 607

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 228/612 (37%), Positives = 341/612 (55%), Gaps = 24/612 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFT 61
            + + + PGVYQMLD +G VLYVGKA NL+ R+ SY   ++    RI  M+ QI +IR  
Sbjct: 14  LKTLTQSPGVYQMLDASGGVLYVGKARNLRSRVASYFRGSDDRGPRIRSMVRQIADIRVA 73

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE EALLLEAN+IKR +PR+N+LLRDDKS+PYI ++++   P L  HR +      Y
Sbjct: 74  VTHTEAEALLLEANLIKRHRPRYNVLLRDDKSYPYIFVSNQ-DYPRLGFHRGAKKKGVRY 132

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ S  AV +++  LQ+ F +R C DSVF HR+RPCL +QI RC+ PC G I+ E+Y 
Sbjct: 133 FGPYPSAGAVRESLALLQKLFQVRQCEDSVFAHRSRPCLQYQIGRCTAPCVGYITPEEYA 192

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             V  + +FL G +  +   + + M  A+ + D+E A   RD++A L  I          
Sbjct: 193 RDVESSVQFLQGKSEVVIADLMQRMEAASERLDFEHAARLRDQIARLRQISEQQFVSGGE 252

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +L     +  ++  F   GQN G    F      +   +I++  L Q+Y ++  
Sbjct: 253 GDADVIALAQEAGVVAVEIFFVRGGQNLGNRELFPNVPEATDTGEIMAAVLAQYYAERDP 312

Query: 300 PENILLSEEAEETSLLEISFFKQY-GYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
           P  +LLS E E  S LE    ++  G KV++    +G++ + ++ A  NA  +   ++++
Sbjct: 313 PARVLLSHEPEGASALEAFLSERRGGRKVQLAWSLRGDRARWLDMARRNAELALKTRIAS 372

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L   T +  L   PKR+E +D SH  G   V   VV G +G +K+ YR+FN+ 
Sbjct: 373 QAGQTARLDALTAELNLESPPKRMECFDISHTGGERTVASCVVFGPDGPIKSDYRRFNI- 431

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            + ++  DD A M   L RRF++L K E                 PD++ +DGGKGQ++ 
Sbjct: 432 -DGIEPGDDYAAMHQALSRRFARLKKGE--------------GQEPDILFIDGGKGQVTQ 476

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEA 537
           A  VL  L ++  I +I +AKG +R  GME   +   E   +L      L+ IQ++RDEA
Sbjct: 477 ALNVLADLGLD-HIRVIGVAKGEERRPGMETLILSGVEAPSILPAHSGALHLIQQIRDEA 535

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR RR KA   S L+ I G+GP R+  LL+ FG ++ ++R+  + L  + GI 
Sbjct: 536 HRFAITGHRARRAKARKESTLEAIPGLGPKRRSALLRHFGGLRGVARAGVDELTKVPGIH 595

Query: 597 KKIACKIYNHFH 608
           +++A  IY+ FH
Sbjct: 596 RRLAQAIYDQFH 607


>gi|83952485|ref|ZP_00961216.1| excinuclease ABC subunit C [Roseovarius nubinhibens ISM]
 gi|83836158|gb|EAP75456.1| excinuclease ABC subunit C [Roseovarius nubinhibens ISM]
          Length = 620

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/604 (44%), Positives = 380/604 (62%), Gaps = 14/604 (2%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+MLD   RVLYVGKA NL+ R+ +Y     HT RI  MI    ++ F  T TE E
Sbjct: 24  SPGVYRMLDAQARVLYVGKARNLRARVSNYARPTGHTGRIQRMIRDTASMMFLTTATETE 83

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK+LKPR+N+LLRDDKSFP IL+T  H  P + KHR +   +G+Y+GPFAS 
Sbjct: 84  ALLLEQNLIKQLKPRYNVLLRDDKSFPNILVTKAHDYPMIKKHRGAKREKGAYYGPFASA 143

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            AV +T+  LQR F LR+C+D++F  RTRPCL +QIKRC+ PC G IS E Y   V +A+
Sbjct: 144 GAVNRTLAQLQRVFMLRNCSDTMFEGRTRPCLQYQIKRCTAPCVGYISREDYAAQVSDAE 203

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245
           +FLSG +  ++EK+A++M  A+ + ++E A   RDR+ AL+ +Q             D  
Sbjct: 204 RFLSGRSTEIQEKLAQDMQAASDEMEFEKAAALRDRIKALTQVQTAQGINPRTVKDADVI 263

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           +L+  K  AC+Q  F   GQN G   F+ +   +    ++L  F+ QFY  K  P  ++L
Sbjct: 264 ALHLEKGQACVQVFFIRGGQNWGNRDFYPRVGVDVEEPEVLEAFIGQFYDSKEPPRQLIL 323

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           S   E+  L+  +  ++ G KV+I VP +GEK ++++ AL NA  S  +K++   +   +
Sbjct: 324 SHALEDNDLMAAALGERLGRKVEILVPIRGEKAELVDGALRNARESLARKMAESATQAKL 383

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L    + F L   P RIE+YDNSHI G  AVG M+V G +GF+KNQYRKFN+  +++   
Sbjct: 384 LSGLAEAFGLDAPPGRIEVYDNSHIQGAHAVGAMIVAGPDGFLKNQYRKFNIRGDELTPG 443

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD  MM+ VL+RRF +L+K +          E     WPD++++DGG GQ+SA   ++++
Sbjct: 444 DDFGMMKEVLKRRFKRLLKED---------PERDKGLWPDLLLIDGGAGQVSAVASIMRE 494

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           + VE+ I ++ +AKG  R  G E+F       + L   DP+LYF+QRLRDEAHRFAI TH
Sbjct: 495 MGVED-IAMVGVAKGVDRDHGKEEFHRVGTRPMALRHNDPVLYFVQRLRDEAHRFAIGTH 553

Query: 546 RKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R KA   SPLDE+ G+G  RKR LL  FG+ K +SR++   L ++EG+S+ +A ++Y
Sbjct: 554 RAKRSKAVSASPLDEVPGVGAARKRALLAHFGSAKAVSRAALADLKAVEGVSEALAQRVY 613

Query: 605 NHFH 608
           +HFH
Sbjct: 614 DHFH 617


>gi|296388947|ref|ZP_06878422.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PAb1]
 gi|313107618|ref|ZP_07793803.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 39016]
 gi|310880305|gb|EFQ38899.1| excinuclease ABC subunit C [Pseudomonas aeruginosa 39016]
          Length = 608

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 216/610 (35%), Positives = 339/610 (55%), Gaps = 24/610 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   ++LYVGKA +L+KR+ SY   +    +   ++++I  +  T+T  E 
Sbjct: 16  NRPGVYRMFDADAKLLYVGKAKSLKKRLASYFRKSGLAPKTAALVARIAQVETTITANET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE  +IK  +P +NILLRDDKS+P++ ++ + + P L  HR +   +G YFGP+ S
Sbjct: 76  EALLLEQTLIKEWRPPYNILLRDDKSYPFVFLSSEDEYPRLSLHRGAKKRKGRYFGPYPS 135

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             A+ +++N LQ+ F +R C DS FR+RTRPCL +QIKRC GPC G +S E+Y E V  +
Sbjct: 136 AGAIRESLNLLQKAFLVRQCEDSYFRNRTRPCLQYQIKRCKGPCVGLVSPEEYAEDVRHS 195

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCF 245
             FL G ++ L +++   M QA ++ D+E A   RD++A L  +Q+          +D  
Sbjct: 196 VMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILRRVQDQQSMEGGNGDVDIV 255

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPEN 302
           +       AC+       G+  G+  FF +   E    ++L  FL Q+Y    ++  P  
Sbjct: 256 AAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVLLAFLGQYYLSHQERDLPAE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ++++   E+  +L  +  +  G +++I+   +G + +  + A+ NA ++   +L+     
Sbjct: 316 LIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQLAVTNAEQALGARLANRQHV 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L   P+R+E +D SH  G + V   VV G  G +K+ YR++N+    V
Sbjct: 376 AARFEALAEALDLAEPPQRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--V 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A M   L RRFS+L   E                 PD++++DGGKGQL+ AQ V
Sbjct: 434 TAGDDYAAMHQALTRRFSRLKDGE--------------GKMPDILLVDGGKGQLAMAQEV 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541
           L++L V   I ++ +AKG  R  G+E  ++        L    P L+ IQ++RDEAHRFA
Sbjct: 480 LQELAVAGLI-LLGVAKGVTRKPGLETLYLNDASHEFTLPADSPALHLIQQIRDEAHRFA 538

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR RR KA   S L+++ G+GP R+R LL+ FG ++ +SR+S + LA   GISKK+A
Sbjct: 539 ITGHRARRGKARRTSTLEDVPGVGPKRRRDLLKYFGGLQELSRASIDELAKAPGISKKLA 598

Query: 601 CKIYNHFHKN 610
            +IY   H  
Sbjct: 599 EQIYAVLHSE 608


>gi|254454102|ref|ZP_05067539.1| excinuclease ABC, C subunit [Octadecabacter antarcticus 238]
 gi|198268508|gb|EDY92778.1| excinuclease ABC, C subunit [Octadecabacter antarcticus 238]
          Length = 621

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 250/605 (41%), Positives = 377/605 (62%), Gaps = 14/605 (2%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+MLD   RVLYVGKA +L+ R+ +Y   + H+ RI  MIS   ++ F  T TE E
Sbjct: 25  SPGVYRMLDSQARVLYVGKARSLKNRVSNYARPSGHSARIATMISHTASMMFLTTNTETE 84

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK+LKP++N+LLRDDKSFP ILI+  H  P + KHR +   +G+Y+GPFAS 
Sbjct: 85  ALLLEQNLIKQLKPKYNVLLRDDKSFPNILISGDHDFPRIEKHRGAKRKKGNYYGPFASA 144

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            AV +T+N+LQR F LR+C+DS +  RTRPCL +QIKRC+ PC G++  E Y + V +A+
Sbjct: 145 GAVNRTLNTLQRAFLLRNCSDSEYEGRTRPCLQYQIKRCAAPCVGKVKQEDYKQLVKDAE 204

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245
           +FL+G +  ++  +A  M +A+   ++E A   RDR+ AL+ +Q             D  
Sbjct: 205 RFLAGKSTEMQASLAAQMQKASEDMEFERAAALRDRIKALTQVQTSQGINPRGVREADVI 264

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           +L+ +   AC+Q  F    QN G   ++ +   +   ++++  F+ QFY+D+  P  +LL
Sbjct: 265 ALHTDGGQACVQVFFIRANQNWGNHDYYPRVSGDEDASEVMQAFVGQFYSDRDPPPMLLL 324

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           S   ++  L+  +   +   KV+I VP++GEK +++  A  NA  S  +K+S   +   +
Sbjct: 325 SHGLDDEDLVTEALSGKIDRKVEIIVPQRGEKAELVSGAARNARESLGRKMSETATQGRL 384

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L+   + F L  +P+RIE+YDNSHI G  AVG M+V G +GF KNQYRKFN+  +D+   
Sbjct: 385 LRGLKEAFDLAEVPQRIEVYDNSHIQGAFAVGAMIVAGPDGFDKNQYRKFNIRGDDLTPG 444

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD  MM+ VL RRF +L+K + N             +WP ++++DGG GQ+SA + ++ +
Sbjct: 445 DDFGMMKEVLMRRFKRLLKEDPN---------RELGTWPGLLLIDGGAGQVSAVRAIMDE 495

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           + V   + ++ +AKG  R  G E+F+      + L   DP+LYF+QR+RDEAHRFAI TH
Sbjct: 496 VGV-GDVPMVGVAKGVDRDHGKEEFYRTGKPVMALQRNDPVLYFVQRMRDEAHRFAIGTH 554

Query: 546 RKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R KA   +PLD++ G+G  RKR LLQ FG+ K + R++   L ++EGIS  +A  IY
Sbjct: 555 RAKRSKAIGATPLDDVPGVGATRKRALLQHFGSAKAVGRAALADLKAVEGISGNMAETIY 614

Query: 605 NHFHK 609
            +F++
Sbjct: 615 GYFNE 619


>gi|152985488|ref|YP_001347977.1| excinuclease ABC subunit C [Pseudomonas aeruginosa PA7]
 gi|189038074|sp|A6V4J2|UVRC_PSEA7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|150960646|gb|ABR82671.1| excinuclease ABC, C subunit [Pseudomonas aeruginosa PA7]
          Length = 608

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 215/610 (35%), Positives = 338/610 (55%), Gaps = 24/610 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   ++LYVGKA +L+KR+ SY   +    +   ++ +I  +  T+T  E 
Sbjct: 16  NRPGVYRMFDADAKLLYVGKAKSLKKRLASYFRKSGLAPKTAALVVRIAQVETTITANET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE  +IK  +P +NILLRDDKS+P++ ++ + + P L  HR +   +G YFGP+ S
Sbjct: 76  EALLLEQTLIKEWRPPYNILLRDDKSYPFVFLSSEDEYPRLSLHRGAKKRKGRYFGPYPS 135

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             A+ +++N LQ+ F +R C DS FR+RTRPCL +QIKRC GPC G +  E+Y E V  +
Sbjct: 136 AGAIRESLNLLQKAFLVRQCEDSYFRNRTRPCLQYQIKRCKGPCVGLVGPEEYAEDVRHS 195

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCF 245
             FL G ++ L +++   M QA ++ D+E A   RD++A L  +Q+          +D  
Sbjct: 196 VMFLEGRSNALADELNTGMEQAAMRLDFEKAAELRDQVAILRRVQDQQSMEGGNGDVDIV 255

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPEN 302
           +       AC+       G+  G+  FF +   E    ++L  FL Q+Y    ++  P  
Sbjct: 256 AAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVLLAFLGQYYLSHQERDLPAE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ++++   E+  +L  +  +  G +++I+   +G + +  + A+ NA ++   +L+     
Sbjct: 316 LIVNVMHEDFPVLVAAIAEARGRQLEISYRVRGTRARWQQLAVTNAEQALGARLANRQHV 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L   P+R+E +D SH  G + V   VV G  G +K+ YR++N+    V
Sbjct: 376 AARFEALAEALDLAEPPQRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--V 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A M   L RRFS+L + E                 PD++++DGGKGQL+ AQ V
Sbjct: 434 TAGDDYAAMHQALTRRFSRLKEGE--------------GKMPDILLVDGGKGQLAMAQEV 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541
           L++L V   I ++ +AKG  R  G+E  ++        L    P L+ IQ++RDEAHRFA
Sbjct: 480 LQELAVAGLI-LLGVAKGVTRKPGLETLYLNDAAHEFTLPADSPALHLIQQIRDEAHRFA 538

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR RR KA   S L+++ G+GP R+R LL+ FG ++ +SR+S + LA   GISKK+A
Sbjct: 539 ITGHRARRGKARRTSTLEDVPGVGPKRRRDLLKHFGGLQELSRASIDELAKAPGISKKLA 598

Query: 601 CKIYNHFHKN 610
            +IY   H  
Sbjct: 599 EQIYAVLHSE 608


>gi|56698457|ref|YP_168831.1| excinuclease ABC subunit C [Ruegeria pomeroyi DSS-3]
 gi|81348818|sp|Q5LMC7|UVRC_SILPO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56680194|gb|AAV96860.1| UvrABC system protein C [Ruegeria pomeroyi DSS-3]
          Length = 623

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 262/610 (42%), Positives = 375/610 (61%), Gaps = 15/610 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     H+ RI  MI +  ++ F  T 
Sbjct: 25  NLSGAPGVYRMLDAQARVLYVGKARNLKARVSNYARP-GHSPRIERMIRETASMMFLTTR 83

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+   H    + KHR +   +G+YFGP
Sbjct: 84  TETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHSFAQIKKHRGAKKEKGTYFGP 143

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +T+N LQ+ F LR+C D+VF  RTRPCLL+QIKRCS PC G IS + Y   V
Sbjct: 144 FASAGAVNRTLNQLQKAFLLRNCTDAVFESRTRPCLLYQIKRCSAPCVGLISDQDYAAAV 203

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
            +A++FLSG +  ++E++A  M  A+   ++E A   RDR+ AL+ +Q            
Sbjct: 204 KDAERFLSGRSTRVQEELAEQMMAASEAMEFERAAALRDRIRALTTVQGTQGINPRGVAE 263

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +L+     AC+Q  F    QN G   F+ +   + + A+++  FL QFY +K  P 
Sbjct: 264 ADVVALHLENGQACVQVFFIRANQNWGNRDFYPRVGEDVSAAEVMEAFLGQFYDNKEPPR 323

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++LS+  E   L+  +  ++ G KV++ VP++GEK +++  AL NA  S  +++S   +
Sbjct: 324 QLILSDAIENADLMTEALSEKAGRKVELLVPQRGEKAELVSGALRNARESLARRMSESAT 383

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L   P+RIE+YDNSHI G +AVG M+V G  GF+KNQYRKFN+  +D
Sbjct: 384 QTKLLGGLAEAFDLDGPPQRIEVYDNSHIQGTNAVGGMIVAGPEGFLKNQYRKFNIRGDD 443

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD  MM+ VL RRF++L+K +          +     WPD++++DGG GQ+SA   
Sbjct: 444 LTPGDDFGMMKEVLTRRFTRLLKED---------PDRDKGLWPDLLLIDGGAGQVSAVHE 494

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           ++    V++ I ++ +AKG  R  G E+F         L   DP+LYFIQRLRDEAHRFA
Sbjct: 495 IMMAHGVQD-IPMVGVAKGIDRDHGKEEFHRTGQRPFALKRNDPVLYFIQRLRDEAHRFA 553

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I THR +R KA   +PLD+I G+G  RKR LL  FG+ K +SR+    L ++EG+S  +A
Sbjct: 554 IGTHRAKRAKAVSATPLDDIPGVGAARKRALLAHFGSAKAVSRADLADLTAVEGVSAGLA 613

Query: 601 CKIYNHFHKN 610
            KIY+ FH++
Sbjct: 614 QKIYDFFHES 623


>gi|254462934|ref|ZP_05076350.1| excinuclease ABC, C subunit [Rhodobacterales bacterium HTCC2083]
 gi|206679523|gb|EDZ44010.1| excinuclease ABC, C subunit [Rhodobacteraceae bacterium HTCC2083]
          Length = 625

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 260/611 (42%), Positives = 373/611 (61%), Gaps = 14/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     H+ RI  MI+Q   + F  
Sbjct: 23  LKTLDSSPGVYRMLDEQSRVLYVGKARNLRARVSNYARPTGHSGRIATMIAQTTTMMFLT 82

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP++N+LLRDDKSFP IL++  H  P + KHR +   +G+Y+
Sbjct: 83  TKTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVSKNHAYPMISKHRGAKKAKGAYY 142

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LR C+DS F  RTRPCL  QIKRCS PC G+IS   Y E
Sbjct: 143 GPFASAGAVNRTLNQLQRAFQLRDCSDSSFDVRTRPCLQHQIKRCSAPCVGKISEVDYAE 202

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            V +A++FL+G +  L+EK+A  M QA+ + ++E A   RDR+ AL+ +Q          
Sbjct: 203 TVRDAERFLAGKSTELQEKLAGQMAQASEEMEFERAAALRDRIKALTQVQTAQGINPRGV 262

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           +  D  +L+     AC+Q  F    QN G   ++ +  ++    ++L  F+ QFY  K  
Sbjct: 263 SEADVIALHMEGGQACVQVFFIRANQNWGNKDYYPRLAADVDEPEVLEAFMGQFYDTKDP 322

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ILLS       L+  +  ++ G KV++ VP++GEK +I++ A+ NA  S  +K++  
Sbjct: 323 PRQILLSHGLLNEDLMADALAQKLGRKVELIVPQRGEKAEIMDGAVRNARESLARKMAET 382

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +LK   + F L   P+RIE+YDNSHI G  AVG M+V G  GF+KN YRKFN+  
Sbjct: 383 QAQSKLLKGLAEAFGLEKAPQRIEVYDNSHIQGAHAVGGMIVAGPEGFIKNAYRKFNIKG 442

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +D+   DD  MM+ V+ RRF +LIK +          +     WPD++++DGG GQ+SA 
Sbjct: 443 DDLTPGDDFGMMKEVMTRRFKRLIKED---------PDREKGDWPDLLLIDGGAGQVSAV 493

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + +++   V   I ++ +AKG  R AG E+F+        L   DP+LYFIQR+RDE HR
Sbjct: 494 REIMESYGV-GDIPMVGVAKGVDRDAGKEEFYRTGQRPFALRHNDPVLYFIQRMRDEVHR 552

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R K    +PLD++ G+G  RKR LL  FG+ K + R++   L +++GIS  
Sbjct: 553 FAIGTHRAKRSKMIGTTPLDDVPGVGAGRKRALLAHFGSAKAVGRANLVDLKAVDGISAA 612

Query: 599 IACKIYNHFHK 609
           +A  IY++FH+
Sbjct: 613 LAQVIYDYFHE 623


>gi|114764453|ref|ZP_01443678.1| excinuclease ABC subunit C [Pelagibaca bermudensis HTCC2601]
 gi|114543020|gb|EAU46039.1| excinuclease ABC subunit C [Roseovarius sp. HTCC2601]
          Length = 626

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 263/610 (43%), Positives = 382/610 (62%), Gaps = 15/610 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +   PGVY+MLD   RVLYVGKA NL+ R+ +Y   +  H+ RI+ MIS+  ++ F  T
Sbjct: 25  TLDSSPGVYRMLDDQSRVLYVGKARNLRARVSNYSRPSAQHSRRISRMISETASMMFLTT 84

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLE N+IK+LKP+FN+LLRDDKSFP I +T +H  P + KHR + T +G+Y+G
Sbjct: 85  RTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNIQVTTEHPFPQIRKHRGAKTEKGAYYG 144

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +T+N LQ+ F LR+C+DS+F  RTRPCLL+QIKRCS PC G IS   Y E 
Sbjct: 145 PFASAGAVNRTLNQLQKAFLLRNCSDSMFEGRTRPCLLYQIKRCSAPCVGYISEADYAES 204

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240
           V +A++FLSG +  ++E +A  M +A+   ++E A   RDR+ AL+ +Q           
Sbjct: 205 VRDAERFLSGKSTRVQETLAAQMAEASEAMEFERAAALRDRIRALTQVQTVQGINPQTVA 264

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D  +L+     AC+Q  F    QN G   ++ +   +    ++L  FL QFY  K  P
Sbjct: 265 EADVIALHMEGGQACVQVFFIRANQNWGNKDYYPRVGEDVEPQEVLEAFLGQFYDTKEPP 324

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LL+ E E   L+  +   + G KV+I VP +GEK +++E A  NA  S  ++++   
Sbjct: 325 RLLLLNHEIENPDLMCQALSDKLGRKVEIAVPLRGEKAELVEGAARNARESLARRMAETA 384

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   +L+   + FAL   P+RIE+YDNSHIMG +AVG M+V G +GF+KNQYRK+N+   
Sbjct: 385 TQAKLLRGLAEAFALDAPPQRIEVYDNSHIMGTNAVGGMIVAGPDGFMKNQYRKYNIKGE 444

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           ++   DD  MM+ VL RRF++L+K++          +     WPD++++DGG GQ+SA  
Sbjct: 445 ELVPGDDFGMMKEVLTRRFTRLLKDD---------PDREKGLWPDLLLIDGGAGQVSAVA 495

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            ++ +  VE+ + ++ +AKG  R AG E+F         L   DP+LYF+QRLRDEAHRF
Sbjct: 496 EIMHEFGVED-VPMVGVAKGIDRDAGKEEFHRVGQRPFALRHNDPVLYFVQRLRDEAHRF 554

Query: 541 AITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR +R K+   +PLDE+ G+G  RKR LL  FG+ K +SR++   L +++G+S  +
Sbjct: 555 AIGTHRAKRAKSQMANPLDEVPGVGAARKRALLAHFGSAKAVSRANLADLKAVDGVSAAL 614

Query: 600 ACKIYNHFHK 609
           A +IY  FH+
Sbjct: 615 AERIYAFFHE 624


>gi|300023522|ref|YP_003756133.1| excinuclease ABC, C subunit [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525343|gb|ADJ23812.1| excinuclease ABC, C subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 670

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 288/639 (45%), Positives = 390/639 (61%), Gaps = 34/639 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+MLD AG V+YVGKA  L+ R+ +Y   N HT+RI  MI    ++ F  
Sbjct: 29  LKTLPQSPGVYRMLDTAGEVIYVGKARQLKSRVSNYARLNGHTNRIARMILATASMEFVT 88

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             TE EALLLEAN+IKR +PRFN+L+RDDKSFPYILI   H  PA+ KHR +   +G YF
Sbjct: 89  VSTEAEALLLEANLIKRFRPRFNVLMRDDKSFPYILIARDHPAPAVMKHRGARNRKGEYF 148

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV++T+N LQR F LRSC+DSV+  RTRPCLL+QIKRCS PCTGEI  + Y E
Sbjct: 149 GPFASAGAVDRTVNMLQRAFLLRSCSDSVYESRTRPCLLYQIKRCSAPCTGEIQLDDYRE 208

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V EA++FL G + +++    + M +A    ++E+A  +R+RL AL+H+        +  
Sbjct: 209 LVVEAERFLKGESQSVRAMYQQLMQEAADALEFETAAKYRNRLWALAHVTADQAINPDGV 268

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D F+ Y +    CIQ  FF  GQN G   ++ K D       +L  F+ QFY DKP 
Sbjct: 269 EEADVFAAYQDGGQTCIQVFFFRTGQNWGNRAYYPKADRSLDAPDVLDSFIAQFYDDKPV 328

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  IL+S +    +LL  +   +   KV+I VP +G K  ++E AL NA  +  +KL+  
Sbjct: 329 PRLILISHDIPNRALLAEALASKAQRKVEIRVPARGTKSSLVEHALTNAREALGRKLAES 388

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L+   ++FAL   P+RIE++DNSHI G +AVG M+V G  GFVK QYRKFN+  
Sbjct: 389 STQARLLEGVAERFALAAPPRRIEVFDNSHIAGTNAVGAMIVAGPEGFVKGQYRKFNIKS 448

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIK----------------------------NEENLNF 451
            DV   DD AMMR VL RRF ++                               +  +  
Sbjct: 449 PDVTPGDDYAMMREVLTRRFKRIADAEVLEEIETEVAELVADTVSEAIPAALVEQAVVEE 508

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
                + +FP  PD+V++DGG GQLS A+ VL    + + I +I +AKGP R AG E F 
Sbjct: 509 TTADDDVAFPDRPDLVLIDGGLGQLSVAREVLAGFGLHD-IQLIGVAKGPDRDAGREHFH 567

Query: 512 -VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKR 569
              + + ++L  RDP+LYF+QRLRDEAHRFAI THR +R KA   +PLDEI+GIGP RKR
Sbjct: 568 IPGREQPIMLETRDPVLYFVQRLRDEAHRFAIGTHRAKRAKALGVNPLDEIDGIGPTRKR 627

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            LL+ FG+ K +SR+  E L ++EGIS  +A +IY+ FH
Sbjct: 628 ALLKHFGSAKAVSRAGIEDLKAVEGISADMARRIYDFFH 666


>gi|84685236|ref|ZP_01013135.1| excinuclease ABC subunit C [Maritimibacter alkaliphilus HTCC2654]
 gi|84666968|gb|EAQ13439.1| excinuclease ABC subunit C [Rhodobacterales bacterium HTCC2654]
          Length = 620

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 273/612 (44%), Positives = 383/612 (62%), Gaps = 16/612 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+MLD  GRVLYVGKA +L+ R+ +Y +   H+ RI  MISQ  ++ F  T 
Sbjct: 18  QLDNSPGVYRMLDETGRVLYVGKAKSLKNRVTNYANRTGHSARIARMISQTASMMFLTTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK+LKP FN+LLRDDKSFP IL+T  H  P + KHR +   +G+Y+GP
Sbjct: 78  TETEALLLEQNLIKQLKPHFNVLLRDDKSFPNILVTKDHPYPQIRKHRGAKKTKGAYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS DAV +T+N LQ+ F LR+C+DS+F  RTRPCLL+QIKRC+GPC G+IS E Y E V
Sbjct: 138 FASADAVNRTLNQLQKVFLLRNCSDSMFESRTRPCLLYQIKRCAGPCVGKISEEGYGELV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            +A++FLSG    ++ ++A  M  A+   ++E A + RDR+AAL+ +Q+           
Sbjct: 198 GDAERFLSGKTTKVQSELAAEMQAASEAMEFERAAVLRDRIAALTKVQSSQGINPRGVTE 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTDKPC 299
            D  +L+     AC+Q  F    QN G   F+ +T   + +  A++L  F+ QFY  K  
Sbjct: 258 ADVIALHMEGGQACVQVFFIRANQNWGNRDFYPRTGAGAGADEAEVLRGFIGQFYDQKEP 317

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
              +LLS + EE  L+  +  ++ G KV I VP++GEK +++  A  NA  S  +KL+  
Sbjct: 318 ARLLLLSHDIEERELMSEALAEKLGRKVAIEVPQRGEKMELVSNAARNARESLGRKLAET 377

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L    + F L   PKRIE+YDNSHI G  AVG M+V G  GF+K+QYRKFN+  
Sbjct: 378 ATQAKLLAGLAEAFDLDEAPKRIEVYDNSHIQGAHAVGGMIVAGPEGFMKSQYRKFNIKG 437

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            D+   DD  MM+ VL RRF +L+K + +              WPD++++DGG GQ+SA 
Sbjct: 438 EDLTPGDDFGMMKEVLTRRFKRLLKEDPDRESDA---------WPDLLLIDGGAGQVSAV 488

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             +++ L VE+ I +I +AKG  R  G E+F   K     L   DP+LYF+QR+RDEAHR
Sbjct: 489 NEIMEDLGVED-IAMIGVAKGVDRDHGKEEFHRPKQRPFALKRNDPVLYFVQRMRDEAHR 547

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   +PLD++ G+G  RK+ LL  FG+ K ++ +S   L +++GIS  
Sbjct: 548 FAIGTHRAKRTKAISANPLDDVPGVGAGRKKALLAHFGSAKAVTTASLSDLKAVKGISAS 607

Query: 599 IACKIYNHFHKN 610
           +A  IY HFH+N
Sbjct: 608 LAETIYGHFHEN 619


>gi|115522949|ref|YP_779860.1| excinuclease ABC subunit C [Rhodopseudomonas palustris BisA53]
 gi|115516896|gb|ABJ04880.1| Excinuclease ABC subunit C [Rhodopseudomonas palustris BisA53]
          Length = 680

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 288/610 (47%), Positives = 386/610 (63%), Gaps = 7/610 (1%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+ML+    VLYVGKA N++KR+ SY     H  RI+ MI+   ++    T TE
Sbjct: 74  PTSPGVYRMLNAGNDVLYVGKAKNVKKRLASYARPTGHVMRISRMIAATVSVEIISTATE 133

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEAN+IK+L+PRFN+LLRDDKSFPYILI+  H  P + KHR + +  G YFGPFA
Sbjct: 134 TEALLLEANLIKQLRPRFNVLLRDDKSFPYILISGDHWAPQILKHRGAQSRPGRYFGPFA 193

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           SV AV +TI +LQR F +RSC DS F  RTRPCLL+QIKRC+GPCTGE+    Y   VHE
Sbjct: 194 SVGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIKRCAGPCTGEVDFPGYTALVHE 253

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A  FLSG +  +K+++A  M +A+   ++E+A ++RDRLAALS IQ+            D
Sbjct: 254 ATDFLSGRSRVVKQQLAGEMEKASDALEFETAALYRDRLAALSAIQSQQGINPRTVEEAD 313

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F+++      C++  FF  GQN G   +F + +   +  ++L  FL QFY DK  P  I
Sbjct: 314 VFAVHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKTFSAEEVLGAFLAQFYDDKQAPRQI 373

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           LLS + EE  LL  +   + G+KV+I  P++GEK++++  AL NA  +  +KL+   +  
Sbjct: 374 LLSHKIEECELLAEALCIKAGHKVEILTPQRGEKKELVFHALTNAREALGRKLADTATQT 433

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
            +L+       LP  P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+    + 
Sbjct: 434 RLLEALVTTLELPRTPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYRKFNIRSEAIT 493

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD  MMR VLERRF +L+            ++   P WPD+VI+DGG+GQL+A   + 
Sbjct: 494 PGDDYGMMREVLERRFKRLL--APPAEGAAAPKDDEVPQWPDLVIIDGGRGQLNAVSEIF 551

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
            KL ++   T++++AKGP R AG E  F+   EA+ L  RDP+LYFIQRLRDEAHRF I 
Sbjct: 552 AKLGLDQA-TLMAVAKGPDRDAGRETLFMPGREAIKLEPRDPVLYFIQRLRDEAHRFVIG 610

Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           +HRK RKK      L EI GIGP RKR LL  FGT+K I R+S   L  + GIS + A +
Sbjct: 611 SHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASLGDLGKVPGISAESARR 670

Query: 603 IYNHFHKNTS 612
           I++ FH    
Sbjct: 671 IFDFFHPQPG 680


>gi|260427615|ref|ZP_05781594.1| excinuclease ABC, C subunit [Citreicella sp. SE45]
 gi|260422107|gb|EEX15358.1| excinuclease ABC, C subunit [Citreicella sp. SE45]
          Length = 625

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 269/612 (43%), Positives = 382/612 (62%), Gaps = 16/612 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            + +   PGVY+MLD   RVLYVGKA NL+ R+ SY   +  H+ RI  MIS+  ++ F 
Sbjct: 23  LKTLDSSPGVYRMLDDQSRVLYVGKARNLKARVSSYSRPSAQHSRRIARMISETASMMFL 82

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLE N+IK+LKP+FN+LLRDDKSFP I++T  H  P + KHR + T +G+Y
Sbjct: 83  TTRTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNIMVT-DHAFPQIRKHRGAKTEKGAY 141

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFAS  AV +T+N LQ+ F LR+C+DS+F  RTRPCLL+QIKRCS PC G +S E Y 
Sbjct: 142 YGPFASAGAVNRTLNQLQKVFLLRNCSDSMFEGRTRPCLLYQIKRCSAPCVGYVSPEDYA 201

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             V +A++FLSG +  ++E +A  M +A+   ++E A   RDR+ AL+ +Q         
Sbjct: 202 ASVRDAQRFLSGKSTAVQETLAAQMMEASEAMEFERAAALRDRIRALTQVQTVQGINPRS 261

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +L+     AC+Q  F    QN G   ++ +   +   A++L  F+ QFY  K 
Sbjct: 262 VAEADVIALHMENGQACVQVFFIRANQNWGNKDYYPRVGEDVDAAEVLEAFVGQFYDTKE 321

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  +LLS E E   L+  +   + G KV+I VP +GEK ++IE A  NA  S  +++S 
Sbjct: 322 PPRLLLLSHEIENPDLMCEALTGKLGRKVEIAVPLRGEKAELIEGAARNARESLARRMSE 381

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +   +L+   + F L   P+RIE+YDNSHIMG +AVG MVV G +GF+KNQYRK+N+ 
Sbjct: 382 TATQAKLLRGVAEAFGLDGPPQRIEVYDNSHIMGTNAVGAMVVAGPDGFMKNQYRKYNIR 441

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             D+   DD  MM+ VL RRF++L+K +          E     WPD++++DGG GQ+SA
Sbjct: 442 GEDLVPGDDFGMMKEVLSRRFTRLLKED---------PERDKGLWPDLLLIDGGAGQVSA 492

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
              ++++  VE+ + ++ +AKG  R AG E+F         L   DP+LYFIQRLRDEAH
Sbjct: 493 VAEIMREHGVED-VPMVGVAKGIDRDAGKEEFHRVGQRPFALRHNDPVLYFIQRLRDEAH 551

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI THR +R K+   +PLDE+ G+G  RKR LL  FG+ K +SR++   L +++G+S 
Sbjct: 552 RFAIGTHRAKRAKSQMANPLDEVPGVGASRKRALLAHFGSAKAVSRANLADLRAVDGVSA 611

Query: 598 KIACKIYNHFHK 609
            +A +IY  FH+
Sbjct: 612 ALAERIYAFFHE 623


>gi|89056410|ref|YP_511861.1| excinuclease ABC subunit C [Jannaschia sp. CCS1]
 gi|119367660|sp|Q28KC6|UVRC_JANSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|88865959|gb|ABD56836.1| Excinuclease ABC subunit C [Jannaschia sp. CCS1]
          Length = 631

 Score =  565 bits (1455), Expect = e-159,   Method: Composition-based stats.
 Identities = 261/607 (42%), Positives = 373/607 (61%), Gaps = 14/607 (2%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+MLD   RVLYVGKA  L++R+ SY   + H+ RI  MI    ++ F  T TE E
Sbjct: 35  SPGVYRMLDSQSRVLYVGKARALKRRVASYAKPSGHSPRIARMIRDTASMMFLTTRTETE 94

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK+LKP+FN+LLRDDKSFP IL++D+H  P + KHR S   +GSYFGPFAS 
Sbjct: 95  ALLLEQNLIKQLKPKFNVLLRDDKSFPNILVSDEHAFPQIKKHRGSKKEKGSYFGPFASA 154

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            AV +T+N LQ+ F LR+C D+VF  RTRPCLL+QIKRCSGPC G IS E Y   V +A 
Sbjct: 155 GAVNRTLNQLQKVFLLRNCTDAVFESRTRPCLLYQIKRCSGPCVGHISEEDYGASVKDAV 214

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245
           +FL G + +L+ ++A  M  A+   ++E A   RDR+ AL+++Q+            D  
Sbjct: 215 RFLKGDSTDLQRQLADGMAAASEAMEFERAAALRDRIRALTNVQSAQGINPQGVKEADVI 274

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           +L+     AC+Q  F    QN G   F+ +  ++    ++L  FL QFY  K  P+ +LL
Sbjct: 275 ALHMEGGQACVQVFFIRANQNWGNRDFYPRVGADIEEPEVLEAFLGQFYDQKEPPKQLLL 334

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           S   E   L+  +   + G KV+I VP++GEK ++++ A  NA  S  +K++   +   +
Sbjct: 335 SHPVESMDLMVDALSGKRGTKVEILVPQRGEKAELVDGARRNARESLGRKMAETQAQGKL 394

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L      F L   PKR+E+YDNSHI G  AVG M+V G  G++K+QYRKFN+    +   
Sbjct: 395 LDGLAGAFGLDGPPKRVEVYDNSHIQGAHAVGAMIVAGPEGYLKSQYRKFNIKGGSLTPG 454

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD  MM+ VL RRF++L+K + +              WPD++++DGG GQ+SA + ++  
Sbjct: 455 DDFGMMKEVLTRRFARLLKEDPDRETEA---------WPDLLLIDGGAGQISAVKEIMDD 505

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L V++ +  I +AKG  R  G E+F+        L   DP+LYF+QR+RDEAHRFAI  H
Sbjct: 506 LGVDD-VPFIGVAKGIDRDQGKEEFYRPGQPVFALKRNDPVLYFVQRMRDEAHRFAIGAH 564

Query: 546 RKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R KA   +PLD++ G+G  RKR LL  FG+ K ++R++   L +++G+S+ +A KIY
Sbjct: 565 RAKRSKAVSATPLDDVPGVGAGRKRALLAHFGSAKAVARANLSDLTAVDGVSEGLAQKIY 624

Query: 605 NHFHKNT 611
           + FH   
Sbjct: 625 DFFHDQA 631


>gi|27382581|ref|NP_774110.1| excinuclease ABC subunit C [Bradyrhizobium japonicum USDA 110]
 gi|81734657|sp|Q89DG9|UVRC_BRAJA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|27355753|dbj|BAC52735.1| excinuclease ABC chain C [Bradyrhizobium japonicum USDA 110]
          Length = 686

 Score =  565 bits (1455), Expect = e-159,   Method: Composition-based stats.
 Identities = 293/611 (47%), Positives = 392/611 (64%), Gaps = 9/611 (1%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTCT 65
           P  PGVY+ML+    VLYVGKA N++KR+ +Y   S     RI  MI+    +    T T
Sbjct: 80  PTSPGVYRMLNANADVLYVGKAKNVKKRLSNYARQSAPQPARILRMIAATVTVEIVSTNT 139

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT  H  P + KHR + T  G YFGPF
Sbjct: 140 ETEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQTRPGRYFGPF 199

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
           AS  AV +TI +LQR F +RSC DS F  R+RPCLL+QI+RC+GPCT EI    Y   V 
Sbjct: 200 ASAGAVNRTITALQRAFLIRSCTDSFFESRSRPCLLYQIRRCAGPCTREIDFPGYTTLVR 259

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           EA  FLSG +H +K+++A  M +A  + ++E+A ++RDRLAALS IQ+            
Sbjct: 260 EATDFLSGKSHAVKQELAGEMEKAANELEFETAALYRDRLAALSAIQSQQGINPRTVEEA 319

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+++     +C++  FF  GQN G   +F + +   T  ++L  FL QFY DKP P+N
Sbjct: 320 DVFAIHQEGGFSCVEVFFFRTGQNWGNRAYFPRAEKTFTPEEVLGSFLAQFYDDKPPPKN 379

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILLS E EE+ LL  +   + G+K+++T PK+GEK++++  AL NA  +  +KL+   + 
Sbjct: 380 ILLSHEIEESELLANALSIKAGHKIEVTAPKRGEKKELVAHALTNAREALGRKLADTATQ 439

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
             +L       +LPH PKRIE+YDNSHI G +AVG M+V G +GFVKNQYRKFN+    +
Sbjct: 440 GRLLDAMATTLSLPHAPKRIEVYDNSHIQGTNAVGAMIVAGPDGFVKNQYRKFNIKSEGL 499

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD  MMR VLERRF +LI          K ++  FP WPD+VI+DGG+GQL+A + +
Sbjct: 500 TPGDDYGMMREVLERRFKRLI---NPPEEGAKVKDDDFPQWPDLVIIDGGRGQLNAVREI 556

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
              L +  +++++S+AKGP R AG E  F+ + EA+ L  RDP+LYFIQRLRDEAHRF I
Sbjct: 557 FANLGLT-QVSLMSVAKGPDRDAGRETLFMPEREAIKLEPRDPVLYFIQRLRDEAHRFVI 615

Query: 543 TTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
            +HRK RKK      L EI GIGP RKR LL  FGT+K I R+S   L  + G+S + A 
Sbjct: 616 GSHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASIADLGKVPGVSAESAR 675

Query: 602 KIYNHFHKNTS 612
           +I+ +FH    
Sbjct: 676 RIFEYFHPQPG 686


>gi|292493086|ref|YP_003528525.1| excinuclease ABC, C subunit [Nitrosococcus halophilus Nc4]
 gi|291581681|gb|ADE16138.1| excinuclease ABC, C subunit [Nitrosococcus halophilus Nc4]
          Length = 604

 Score =  565 bits (1455), Expect = e-159,   Method: Composition-based stats.
 Identities = 230/610 (37%), Positives = 345/610 (56%), Gaps = 22/610 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD  G+VLYVGKA NL++R+ SY        +   ++SQI +I  TV
Sbjct: 12  LKNLTSRPGVYRMLDAEGKVLYVGKARNLKRRLSSYFRKTGLATKTHRLVSQIFDIEITV 71

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N+IK L+PR+N+LLRDDKS+PYI ++     P L  HR +    G YF
Sbjct: 72  THTENEALILENNLIKALQPRYNVLLRDDKSYPYIFLS-ADDFPRLGFHRGAKRTPGQYF 130

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ SV A+ +T+  LQ  F +R C DS +R+R+RPCL +QIKRC+ PC G I  E+Y +
Sbjct: 131 GPYPSVGAMRQTLRLLQEVFPVRQCEDSFYRNRSRPCLQYQIKRCTAPCVGLIDKERYHQ 190

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V  A  FL G +  + +++   M +A+ +  +E A  +RDR+A+L  IQ         +
Sbjct: 191 DVQHAVMFLEGRDQQVIDELVARMEEASQQLAFEQAAYYRDRIASLRRIQERQYISGKEV 250

Query: 243 DCF--SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
           D          + AC++  F   G+N G  TF  K     T  ++LS F+ Q+Y ++  P
Sbjct: 251 DIDVLGATVKGSTACVEVFFIRGGRNLGNKTFLPKFQGNLTPRELLSAFIPQYYLNREIP 310

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ++LS + E+  LL     +Q G K+ +  P +G K + ++ AL NA  +  + L  + 
Sbjct: 311 PTLVLSHQPEDMELLTEVLSEQAGRKIMLLRPTRGSKIRWVKMALTNAEINLNRCLVKKT 370

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S     K   +     ++P+R+E +D SH  G + V   VV    G     YR+FN+   
Sbjct: 371 SIVERFKSLQQLLGWTNLPQRLECFDISHTRGEATVASCVVFDREGPNSTDYRRFNIEG- 429

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            V   DD A +R  L RR+ +L K E                 PD++++DGGKGQL+ A 
Sbjct: 430 -VTPGDDYAALRQALTRRYRRLKKGE--------------GILPDLLVIDGGKGQLAQAV 474

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHR 539
            VL+++ +E   T++ IAKGP+R AG E   +  +   +++    P L+ +Q +RDEAHR
Sbjct: 475 TVLREIGIEET-TVLGIAKGPERKAGQETLLLAGRDTPVIVAPDSPALHLLQHIRDEAHR 533

Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT+HRKRR K    SPL+ I G+GP R++ LL   G ++ ++R+  E LA + GIS  
Sbjct: 534 FAITSHRKRRIKGHKISPLETIPGLGPKRRQRLLTQLGGLREVARAGVEELARVPGISPG 593

Query: 599 IACKIYNHFH 608
           +A +IY+ FH
Sbjct: 594 LAQRIYDSFH 603


>gi|258542181|ref|YP_003187614.1| excinuclease ABC subunit C [Acetobacter pasteurianus IFO 3283-01]
 gi|256633259|dbj|BAH99234.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636318|dbj|BAI02287.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639371|dbj|BAI05333.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642427|dbj|BAI08382.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645482|dbj|BAI11430.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648535|dbj|BAI14476.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651588|dbj|BAI17522.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654579|dbj|BAI20506.1| excinuclease UvrABC subunit C UvrC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 637

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 276/613 (45%), Positives = 377/613 (61%), Gaps = 15/613 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + + MP  PGVY+ML   G VLYVGKA  L+KR+ SY H N    R+  M+S+   +   
Sbjct: 32  ALKTMPLSPGVYRMLGAKGEVLYVGKALALKKRVTSYTHINRLPERLRRMVSETVAMEIV 91

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEAN IKR+KPRFNILLRDDKS+P++++TD H  P + KHR  +    S 
Sbjct: 92  TTHTEAEALLLEANYIKRMKPRFNILLRDDKSYPWLMLTDAHAFPQIAKHRGKAVKGSSL 151

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFAS  AV +T+N +QR F LRSC D+VF  RTRPCLL+QIKRCSGPC   I  E Y 
Sbjct: 152 WGPFASAWAVNQTLNLIQRVFLLRSCTDAVFNSRTRPCLLYQIKRCSGPCVDRIDQESYG 211

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           + V +A++FLSG +  L+E + + MN A    D+E A + RDR+ AL+ +Q  +      
Sbjct: 212 QLVEQAREFLSGKDTALRETLGQEMNAAAEALDFERAAVLRDRIRALAQMQESSVINPAS 271

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +L+     ACIQ  F   G+N G+ +FF     ++T A +LS F+ QFY DKP
Sbjct: 272 LQDADVLALWQEAGHACIQVFFIRGGRNNGSRSFFPAHTQDATPADVLSAFIAQFYDDKP 331

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
           CP  IL++ E  E+ LL  +   + G KV+I  P++GEK+++++ A+ NA  + ++KL+ 
Sbjct: 332 CPAQILVNYELPESLLLTEALSLRRGRKVEILAPQRGEKKQVLDHAVTNARDALSRKLAE 391

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                 +L+       L   P+RIE+YDNSHI G  A G M+V G  GF +  YRKF + 
Sbjct: 392 TAGQAKLLQGVADVLGLDAPPERIEVYDNSHIQGSHAYGVMIVGGPEGFNRKAYRKFKIK 451

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD  MMR VLERRF + +K  E  +           +WPDV+++DGG GQ SA
Sbjct: 452 GPVTPG-DDFGMMREVLERRFGRALKEAEEGDT---------SNWPDVLLIDGGAGQYSA 501

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            + VL  L V   + ++ IAKGP R AG E F+ +  E   L++RDP+LY++QRLRDEAH
Sbjct: 502 VRSVLDDLGVTG-VKLVGIAKGPDRDAGKEWFYTEDKEPFQLDLRDPVLYYLQRLRDEAH 560

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAITTHR  R K    S LD++ GIGP RK+LLL +FG+ + I ++    L +  GIS+
Sbjct: 561 RFAITTHRSGRSKTLVKSELDDVPGIGPARKKLLLNTFGSARAIKQAGLAELEAAPGISR 620

Query: 598 KIACKIYNHFHKN 610
           + A  IY HFH +
Sbjct: 621 ETARAIYGHFHPD 633


>gi|254487302|ref|ZP_05100507.1| excinuclease ABC, C subunit [Roseobacter sp. GAI101]
 gi|214044171|gb|EEB84809.1| excinuclease ABC, C subunit [Roseobacter sp. GAI101]
          Length = 621

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 261/611 (42%), Positives = 384/611 (62%), Gaps = 14/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y  S+ H+ RI  MIS   ++ F  
Sbjct: 19  LKTIDSSPGVYRMLDSESRVLYVGKARNLRARVSNYARSSGHSGRIARMISNTASMMFLT 78

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP+FN+LLRDDKSFP IL+T     P + KHR +   +G+Y+
Sbjct: 79  TKTETEALLLEQNLIKQLKPKFNVLLRDDKSFPNILVTADGDYPQIKKHRGAKKEKGNYY 138

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LR C++++F  RTRPCL  QIKRCS PC G+IS E+Y +
Sbjct: 139 GPFASAGAVNRTLNQLQRVFLLRDCSNAMFDSRTRPCLQHQIKRCSAPCVGKISPEEYRK 198

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            V +A+KFL+  + +++ ++A +M  A+   ++E A   RDR+ AL+ +Q          
Sbjct: 199 TVQDAQKFLNSKSTDIQVRLAADMAAASEAMEFERAAALRDRIKALTQVQTAQGINPQGV 258

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           +  D  +L+ ++  AC+Q  F    QN G   ++ +   +   A++L  F+ QFY  +  
Sbjct: 259 SEADIIALHLDQGQACVQVFFIRANQNWGNRDYYPRVGPDVDAAEVLEAFIGQFYDTREP 318

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++LS E E   L+  +   + G KV++ VP++GEK ++++ AL NA  S  +KL+  
Sbjct: 319 PRQLILSNEIENPDLMADALSGKLGRKVELLVPQRGEKAELVDGALRNARESLARKLAET 378

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +LK     F LP  P+RIE+YDNSHI G +AVG MVV G +G +KNQYRKFN+  
Sbjct: 379 ATQTNLLKGLADAFELPASPQRIEVYDNSHIQGTNAVGGMVVAGPDGMMKNQYRKFNIRG 438

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +++   DD  MM+ VL RRF +L+K +          +     WPD++++DGG GQ+SA 
Sbjct: 439 DELTPGDDFGMMKEVLTRRFKRLLKED---------PDRKLGMWPDLLLIDGGAGQVSAV 489

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++++  VE+ I ++ +AKG  R AG E+F       + L   DP+LYFIQR+RDEAHR
Sbjct: 490 ASIMREYGVED-IPMVGVAKGVDRDAGKEEFHRVGKRPMALRHNDPVLYFIQRMRDEAHR 548

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   +PLDE+ G+G  RKR LL  FG+ K + R++   L +++G+S+ 
Sbjct: 549 FAIGTHRAKRAKAVGATPLDEVPGVGAARKRALLAHFGSAKAVGRANLSDLLAVDGVSRA 608

Query: 599 IACKIYNHFHK 609
           +A +IY  FH+
Sbjct: 609 LAERIYAFFHE 619


>gi|192361497|ref|YP_001982263.1| excinuclease ABC subunit C [Cellvibrio japonicus Ueda107]
 gi|190687662|gb|ACE85340.1| excinuclease ABC, C subunit [Cellvibrio japonicus Ueda107]
          Length = 612

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 225/610 (36%), Positives = 345/610 (56%), Gaps = 24/610 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           + PGVYQM +  G +LYVGKA NL+ R+ SY   +  + +   ++S+I N++ T+T +E 
Sbjct: 20  QQPGVYQMFNAQGHILYVGKAKNLKARLSSYFRKSGLSPKTQALVSRIANVQVTITPSET 79

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL+LE N+IK  +P +NILLRDDKS+PYI I+     P +  HR +   +G Y+GP+ +
Sbjct: 80  EALILEQNLIKSNRPPYNILLRDDKSYPYIFISSGEDFPRIATHRGAKKKRGDYYGPYPN 139

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
           V AV+ ++N LQ+TF +R C DSVF +RTRPCL +QIKRC+ PC   IS ++Y   +   
Sbjct: 140 VGAVKDSLNFLQKTFRVRQCEDSVFNNRTRPCLQYQIKRCTAPCVDYISPDEYQLDLRHT 199

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
           + FLSG N +L  ++A  M Q+     +E A  +RD+++AL  +Q+       R D   +
Sbjct: 200 RMFLSGQNDDLLVELANQMEQSAQSLHFEKAAAYRDQISALRTVQSQQVMEEGRGDIDVI 259

Query: 248 YHNKNLA--CIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPEN 302
             +   A  C+   F   G+  G+ +F+  T    T AQ+L+ F+ QFY     +  P  
Sbjct: 260 AADMRAAAICVHILFVRQGRILGSRSFYPPTTLAETPAQVLAEFIPQFYLANQGRDIPRE 319

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           I++SE  EE  LL  +  +  G  V I+   +  + + ++ A   A ++    ++++ S 
Sbjct: 320 IIVSEPLEEAELLANALQQSVGRVVVISQQVRSHRAQWLQMATTAAQQNLIGHINSKKSS 379

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
                   +  +L   P+R+E +D SH  G   V   VV   NG +K+ YR+FN+    +
Sbjct: 380 LDRFVALQEALSLEETPQRLECFDISHSSGELTVASCVVFDTNGPLKSDYRRFNIEG--I 437

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A M   L RR+++L   E                 PD++++DGGKGQL  A  V
Sbjct: 438 TPGDDYAAMEQALTRRYTRLQNGE--------------GKMPDILLIDGGKGQLGKAIEV 483

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541
           L +L V+  + +I +AKG  R AG E  F    GE +VL    P L+ IQ +RDE+HRFA
Sbjct: 484 LGELGVQG-VQLIGVAKGTTRKAGFETLFDGDTGEEIVLPGDSPALHLIQHIRDESHRFA 542

Query: 542 ITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT H++RR KK   S L++I G+G  R+R LL+ FG ++ + ++S   LA + GIS K+A
Sbjct: 543 ITGHKQRRDKKRRTSSLEDIPGVGATRRRELLRHFGGLQEVQKASVVELAKVPGISHKLA 602

Query: 601 CKIYNHFHKN 610
            +IY+ FH +
Sbjct: 603 EEIYSFFHND 612


>gi|126740607|ref|ZP_01756294.1| excinuclease ABC subunit C [Roseobacter sp. SK209-2-6]
 gi|126718408|gb|EBA15123.1| excinuclease ABC subunit C [Roseobacter sp. SK209-2-6]
          Length = 622

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 262/610 (42%), Positives = 381/610 (62%), Gaps = 15/610 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y    N + RI  MI+   ++ F  T
Sbjct: 22  KTLDASPGVYRMLDSESRVLYVGKARNLKARVSNYTRPGN-SPRIERMIALTASMMFLTT 80

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+   H+ P + KHR +   +GSYFG
Sbjct: 81  RTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKNHRFPQIKKHRGARKEKGSYFG 140

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +T++ LQ+ F LR+C+D++F  RTRPCL +QIKRC+ PCTGEIS   Y+  
Sbjct: 141 PFASAGAVNRTLSQLQKAFLLRNCSDAMFESRTRPCLQYQIKRCTAPCTGEISESDYLLS 200

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240
           V +A++FLSG +  ++E++A  M  A+   ++E A   RDR+ AL+ +Q+          
Sbjct: 201 VRDAERFLSGRSTKIQEELAEEMMAASEAMEFERAAALRDRIKALTQVQSSQGINPRGVA 260

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   L+  +  AC+Q  F    QN G   F+ + D++   A+++  FL QFY +K  P
Sbjct: 261 EADIVGLHMERGQACVQVFFIRANQNWGNQDFYPRVDADMNPAEVMEAFLGQFYDNKEPP 320

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ++LS+  E   L+  +   + G +V+I VP +GEK +++  A+ NA  S  ++++   
Sbjct: 321 RQLILSDAIENADLMAEALSGKAGRRVEILVPLRGEKTELVAGAVRNARESLARRMAESA 380

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   +L+   + F L   P+RIE+YDNSHI G +AVG M+V G  GF+KN YRKFN+  +
Sbjct: 381 TQAKLLRGIAEAFGLEASPQRIEVYDNSHIQGTNAVGAMIVAGPEGFMKNAYRKFNIKGD 440

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MM+ VL RRFS+L K +          +     WPD++++DGG GQ+SA  
Sbjct: 441 DLVPGDDFGMMKEVLHRRFSRLKKED---------PDRDKGHWPDLLLIDGGAGQVSAVA 491

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            ++++  VE+ I ++ +AKG  R  G E+F+     A  L   DP+LYFIQR+RDEAHRF
Sbjct: 492 EIMQEHGVED-IPMVGVAKGVDRDHGKEEFYRPGENAFALQRNDPVLYFIQRMRDEAHRF 550

Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR +R KA   +PLDE+ G+G  RKR LL  FG+ K +SR+    L ++EGIS  +
Sbjct: 551 AIGTHRAKRAKAIGATPLDEVPGVGASRKRALLAHFGSAKAVSRADLADLKAVEGISSAL 610

Query: 600 ACKIYNHFHK 609
           A  IY+ FH+
Sbjct: 611 AETIYDFFHE 620


>gi|320159933|ref|YP_004173157.1| uvrABC system protein C [Anaerolinea thermophila UNI-1]
 gi|319993786|dbj|BAJ62557.1| uvrABC system protein C [Anaerolinea thermophila UNI-1]
          Length = 620

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 211/615 (34%), Positives = 325/615 (52%), Gaps = 17/615 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PG Y   + AG V+YVGKA NL+ R++SY + +    +   ++  I +I + V
Sbjct: 12  LDNLPTRPGCYIYKNEAGEVIYVGKAVNLRNRVRSYFNESPKDFKTRQLVRHIAHIDWIV 71

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E+EAL+LE N+IK+ +PR+NI L+DDK +PYI +      P +   R        YF
Sbjct: 72  VESELEALILEMNLIKKYRPRYNIRLKDDKRYPYIKVHWAAPFPKVTVTRQMVQDGSRYF 131

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ SV AV +T++ L+R F   +C   +     R CL + IK C+ PC G I   +Y  
Sbjct: 132 GPYTSVWAVHQTLDVLRRIFPYLTCDREITGKDARACLYYDIKLCAAPCIGAIGQAEYRR 191

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            + +   FL G    +  ++ + M  A     +E A   RD++ A+  I      I ++ 
Sbjct: 192 MIEDLCDFLQGRTEPIVTRLQKEMEDAAEALQFERAAAIRDQIFAIEKIVEKQRVISSKQ 251

Query: 243 ---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KP 298
              D  ++      AC+Q  F   G+  G   F L+   E   A+I+S F++QFY++   
Sbjct: 252 MDSDVIAIARANGEACVQIFFIRSGKLIGREYFILEGTHEEQEAEIVSQFIKQFYSEAAT 311

Query: 299 CPENILLSEEAEETSLLEIS-FFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HT 353
            P+ +LL  E EE  ++E     ++ G KV++ VP  GE+R+++E A  NA  +      
Sbjct: 312 LPDQVLLPHEVEEAQIIEQWLKSRRGGEKVQLVVPGHGEERELVEMATENAIETLAALRA 371

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           Q  +     Q  L +  +   LP  P +IE +D S+  G + V  MVV  +    K  YR
Sbjct: 372 QWEADTNKQQQALAEIQQALNLPAPPNKIECFDISNTQGTATVASMVVFEQGVPSKKNYR 431

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
            FN+    V+  DD A M   L RRF +    +E       K + +F   PD++I+DGGK
Sbjct: 432 HFNIRS--VQGPDDFASMEEALTRRFKRWQAAQEGQFEPGAKLDPAFTILPDLLIVDGGK 489

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQLS A  VL+   +  ++ ++ +AK  +     E F  ++ E+++L      LY +QR+
Sbjct: 490 GQLSRAVKVLESFGLLGKVPVVGLAKQNE-----ELFLPERSESILLPRHSQGLYLLQRI 544

Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT HRK+R K    S LD I GIGP R+R LLQ FG+++ I ++S E L + 
Sbjct: 545 RDEAHRFAITAHRKQRTKQGMASVLDSIPGIGPARRRWLLQHFGSLEAIRQASLEELTAA 604

Query: 593 EGISKKIACKIYNHF 607
            GI+K++A KI  H 
Sbjct: 605 PGITKELAQKIKEHL 619


>gi|148253258|ref|YP_001237843.1| excinuclease ABC subunit C [Bradyrhizobium sp. BTAi1]
 gi|146405431|gb|ABQ33937.1| Excinuclease ABC subunit C [Bradyrhizobium sp. BTAi1]
          Length = 688

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 295/611 (48%), Positives = 390/611 (63%), Gaps = 7/611 (1%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCT 65
           P  PGVY+ML+ A  VLYVGKA N++KR+ SY  +N     RI  MI+    +    T T
Sbjct: 80  PTSPGVYRMLNAAHDVLYVGKAKNVKKRLSSYARANAPLPARILRMIAATVAVEIVSTTT 139

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLEAN+IK+LKPRFN+ LRDDKSFPYILIT  H  P + KHR + +  G YFGPF
Sbjct: 140 ETEALLLEANLIKQLKPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPF 199

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
           AS  AV +TI +LQR F +RSC DS F  RTRPCLL QI+RC+GPCT EI    Y E V 
Sbjct: 200 ASAGAVNRTITALQRAFLIRSCTDSFFESRTRPCLLHQIRRCAGPCTQEIDFPGYTELVR 259

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           EA  FLSG +  +K  +A  M +A+ + ++E+A ++RDRLAALS I +            
Sbjct: 260 EATDFLSGRSQAVKALLAAEMEKASSELEFETAAVYRDRLAALSAISSQQGINPRTVEEA 319

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+++      C++  FF  GQN G   +F + +   T  ++LS FL QFY DKP P  
Sbjct: 320 DVFAVHQEGGFFCVEVFFFRTGQNWGNRAYFPRAEKTFTPEEVLSAFLSQFYDDKPPPRL 379

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +LLS E EE  LL  +   + G+KV+++ PK+GEK+ ++  AL NA  +  +KL+   + 
Sbjct: 380 VLLSHEIEEAELLAEALCVKAGHKVEVSTPKRGEKKDLVTHALTNAREALGRKLADTATQ 439

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
             +L+  T    LP IPKRIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+    +
Sbjct: 440 SRLLEAMTTTLGLPQIPKRIEVYDNSHIQGTNAVGAMIVAGPDGFMKNQYRKFNIKSEGL 499

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD AMM+ VL+RRF +L+   E  +     +E   P WPD+VI+DGG+GQL+A + +
Sbjct: 500 TPGDDYAMMKEVLQRRFKRLVAPSEK-DVARAAKEDDVPQWPDLVIIDGGRGQLNAVREI 558

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
             +L V N + ++S+AKGP R AG E  F+ +  A+ L  RDP+LYFIQRLRDEAHRF I
Sbjct: 559 FTELGVTN-VALMSVAKGPDRDAGRETLFIPERAAIKLEPRDPVLYFIQRLRDEAHRFVI 617

Query: 543 TTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
            +HRK RKK      L EI GIGP RKR LL  FGT+K I R+S   L  + G+S + A 
Sbjct: 618 GSHRKLRKKDIREAGLQEIPGIGPSRKRALLHHFGTLKEIERASIADLGKVPGVSAESAR 677

Query: 602 KIYNHFHKNTS 612
           KI+ +FH + S
Sbjct: 678 KIFEYFHSSAS 688


>gi|144899719|emb|CAM76583.1| Excinuclease ABC subunit c [Magnetospirillum gryphiswaldense MSR-1]
          Length = 631

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 273/609 (44%), Positives = 382/609 (62%), Gaps = 14/609 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+ML+  G VLYVGKA +L+KR+ +Y      T RI  MI++   +    T 
Sbjct: 31  TLPATPGVYRMLNQRGDVLYVGKAKSLKKRVVAYTKPERQTLRIQRMIAETAFMEVITTH 90

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TEVEALLLE+N+IK L PR+NILL+DDK+FP+IL+T  H  P + KHR + + +G YFGP
Sbjct: 91  TEVEALLLESNLIKTLGPRYNILLKDDKTFPHILLTGDHDWPQVVKHRGARSRRGEYFGP 150

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +T+++LQR F LRSC DSVF  RTRPCLLFQIKRCS PC   I   +YM+ V
Sbjct: 151 FASAGAVNQTLSALQRAFLLRSCTDSVFSSRTRPCLLFQIKRCSAPCVDRIDHAEYMDLV 210

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            +A+ FLSG +  ++  +A+ M  +    +YE A ++RDR+ ALS IQ H D        
Sbjct: 211 AQARAFLSGQSQAIQRDLAKRMEASAEAMEYEQAAVYRDRIRALSRIQAHQDINPADVAE 270

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +L+      C+Q  FF  G N G   +F +  +E+  +++++ FL QFY DK  P 
Sbjct: 271 ADVVALHQAGGQTCVQVFFFRSGCNYGNRAYFPQHAAEAEASEVMAAFLGQFYADKQPPR 330

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILLS+E  E  ++  +   + G KV ++VPK+G+++++IE A  NA  +  ++++   +
Sbjct: 331 EILLSQEPAEAEIVAAALSAKAGRKVIVSVPKRGDRKRLIEHAYDNAREALGRRMAESSA 390

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L   P RIE+YDNSHI G +AVG M+V G +G +K  YRKFN+   +
Sbjct: 391 QGTLLDGVAELFGLDARPNRIEVYDNSHIQGTNAVGGMIVAGPDGLMKAAYRKFNIRSTE 450

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD AMMR VL RRF +  K +          +     WPD+V++DGG GQL+A   
Sbjct: 451 LTPGDDFAMMREVLTRRFQRAQKED---------PDRDRGQWPDLVLIDGGLGQLNATVE 501

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           VL  L +++ + ++SIAKGP R+AG E+FF+   E   L M+DP+LYF+QRLRDEAHRFA
Sbjct: 502 VLADLGIDD-VALVSIAKGPDRNAGRERFFMPGKEPFSLPMKDPVLYFLQRLRDEAHRFA 560

Query: 542 ITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I  HR RR      SPLDEI+GIG  RK+ LL  FG+ +  + +    L ++ GISK +A
Sbjct: 561 IGAHRTRRAGDMVRSPLDEIDGIGAARKKALLHHFGSAREAAAAGLADLEAVPGISKSMA 620

Query: 601 CKIYNHFHK 609
            KIY+HFH 
Sbjct: 621 KKIYDHFHP 629


>gi|307294418|ref|ZP_07574262.1| excinuclease ABC, C subunit [Sphingobium chlorophenolicum L-1]
 gi|306880569|gb|EFN11786.1| excinuclease ABC, C subunit [Sphingobium chlorophenolicum L-1]
          Length = 637

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 260/611 (42%), Positives = 372/611 (60%), Gaps = 16/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M D  G VLYVGKA  L+ R+ +Y   +    R+  M++Q  ++    
Sbjct: 37  LKTLPTRPGVYRMQDARGDVLYVGKARALRNRVTNYTQVDRLPRRLQRMVAQTRSMTIVT 96

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLEA +IKR +P +N+LLRDDKSFP+IL+ + H  P + KHR +   +G Y+
Sbjct: 97  TNSEAEALLLEAQLIKRFRPPYNVLLRDDKSFPFILLREDHAFPRVQKHRGARKYKGRYY 156

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  +V +TIN+LQ+ F LRSC DS F +R+RPCLL+QI+RCS PC G I    Y E
Sbjct: 157 GPFASAGSVTRTINALQKLFLLRSCTDSFFANRSRPCLLYQIRRCSAPCVGRIDDAHYAE 216

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            V +A+ FL G +  +++K+   M  A+   D+E A + RDRL AL+ IQ          
Sbjct: 217 LVQDAQDFLGGKSTAVQKKLGEAMQAASDAMDFEQAAVLRDRLKALTFIQGSQAINAEGL 276

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D F+L       CIQ  F   GQN G  +FF    +E    ++LS F+ QFY + P 
Sbjct: 277 GDADIFALATRGGAMCIQAFFIRGGQNWGHRSFFPVHTAEVAEDEVLSSFMAQFYEEVPP 336

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ IL      E  L+  +  ++ G KV+I VP++G++ ++I+QA  NA  +  ++L+  
Sbjct: 337 PKLILSDRAPAECELMAQALTERIGSKVRIEVPQRGDRTRLIKQAQRNAVEALDRRLAET 396

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   IL++  + F L  +P RIEIYDNSHI G  A+G MVV G  GF KN YRKFN+  
Sbjct: 397 TTQAKILEEMVETFGLDGVPDRIEIYDNSHIQGAHALGAMVVAGPEGFRKNAYRKFNMK- 455

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           N   + DD AMMR + ERRF +  + +          +     WPD+V++DGGKGQLSAA
Sbjct: 456 NPETSNDDFAMMREMFERRFGRAARED---------PDRDSGEWPDLVLIDGGKGQLSAA 506

Query: 480 QGVLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           + +L+ + +E+ + +I IAKGP     G E F +  G  ++L +  P+L+++QRLRDEAH
Sbjct: 507 RAILEDMGIED-VCMIGIAKGPHHGREGREVFHMPDGREIMLPLNHPVLFYLQRLRDEAH 565

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HR++R KA   S LDE+ GIGP RK+ LL  FGT + +  ++ E L    G+SK
Sbjct: 566 RFAIGAHRQKRSKAITVSSLDEVPGIGPSRKKALLMHFGTARAVKSAALEDLLKAPGVSK 625

Query: 598 KIACKIYNHFH 608
            +A +IY++FH
Sbjct: 626 AVAQQIYDYFH 636


>gi|327480699|gb|AEA84009.1| excinuclease ABC subunit C [Pseudomonas stutzeri DSM 4166]
          Length = 607

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 213/609 (34%), Positives = 332/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   ++LYVGKA NL+KR+ SY        +   ++++I  +  T+T  E E
Sbjct: 17  RPGVYRMFDAQAKLLYVGKAKNLKKRLASYFRKTGQAPKTAALVAKIAQVETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK+ +P +NILLRDDKS+PY+ ++     P L  HR +    G YFGP+ S 
Sbjct: 77  ALLLEQTLIKQWRPPYNILLRDDKSYPYVFLSAGE-FPRLSIHRGAKKEPGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+ FF+R C DS FR+RTRPCL +QIKRC  PC   +  ++Y E V  + 
Sbjct: 136 GAIRESLSLLQKAFFVRQCEDSYFRNRTRPCLQYQIKRCKAPCVKLVDPQEYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L E+++RNM +A +  D+E A   RD++  L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALAEELSRNMEKAAMNLDFERAAEIRDQIGILRRVQDQQSMEGGSGNVDIVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
              +   AC+       G+  G+  FF +   E + +++L  FL Q+Y    ++  P  +
Sbjct: 256 AVVSPGGACVHLITVRGGRVLGSKNFFPQVAIEESVSEVLQAFLEQYYLGATERDLPSEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+ + L  +  +  G ++ IT   +  + +  + AL NA ++   +L+      
Sbjct: 316 IVNAVHEDFATLIDAISELRGVELNITHRVRATRARWQQLALTNAEQALGARLANRQHLS 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   +   L   P R+E +D SH  G + V   VV G  G +K+ YR++N+    V 
Sbjct: 376 ARFEALAEALELDEPPMRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RRF +  + E  L              PD++++DGGKGQL+ A+ VL
Sbjct: 434 AGDDYAAMHQALSRRFRKAAEGEGKL--------------PDILLVDGGKGQLNMAREVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
           ++L V   I ++ +AKG  R  G+E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 EELAVPELI-LLGVAKGVTRKPGLETLYLNDAAHEFTLPADSPALHLIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR KA   S L+++ GIGP R+R LL  FG ++ + R+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKARRTSTLEDVPGIGPKRRRELLTHFGGLQELCRASLDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY   H  
Sbjct: 599 SIYAALHSE 607


>gi|253996148|ref|YP_003048212.1| excinuclease ABC subunit C [Methylotenera mobilis JLW8]
 gi|253982827|gb|ACT47685.1| excinuclease ABC, C subunit [Methylotenera mobilis JLW8]
          Length = 599

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 225/611 (36%), Positives = 328/611 (53%), Gaps = 24/611 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M++ +  V+YVGKA +L+KR+ SY + N  + R   M+S I  I  TV
Sbjct: 8   LKNLPNLPGVYRMINASDEVIYVGKAKDLKKRVSSYFNKNLPSPRTRMMVSNIARIETTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLE N+IK L PR+N+L RDDKS+PYI +T       L  HR +      YF
Sbjct: 68  TRSEAEALLLENNLIKGLMPRYNVLFRDDKSYPYITLTGDE-YSRLAFHRGAQRKGNQYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +  AV ++I  LQ+ F LR+C ++VF +R+RPCL  QI RC+ PC   IS+E Y  
Sbjct: 127 GPFPNSVAVRESIQLLQKVFKLRTCENTVFANRSRPCLQHQIARCTAPCVNFISAEDYRN 186

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239
            VH+A  FL G    + + IA  M+ A  K+ YE A + RDR+ AL  +Q          
Sbjct: 187 DVHQAAMFLQGKTTEVIDSIAEQMSAAAAKQSYELAAVFRDRIQALHQVQAKQFVSDFNI 246

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           +  D  +    +   CI       G++ G  ++  K     T    +  FL Q Y  +  
Sbjct: 247 SDADVIASAELQGQHCINLVMIRGGRHLGDRSYMPKNTDGETLETTVQAFLAQHYVAQNT 306

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  I++  + E   L E    +Q G KVKI     G+KR  +  A  NA  +  Q+ +T 
Sbjct: 307 PPLIVVGVKIET-ELFEEVLSEQAGRKVKINTNPIGDKRVWLRMAQTNAELALGQRAATT 365

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            + +  L    +   LP   +R+E +D SH MG + V   VV        ++YR++N+  
Sbjct: 366 ANQEAKLLALREALRLPDSTERMECFDISHTMGEATVASCVVFDRGDMQNSEYRRYNI-- 423

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR VL RR+ ++   E                 PD+V +DGGKGQL  A
Sbjct: 424 TGITPGDDYAAMRDVLTRRYKKVAAGE--------------GKRPDLVFIDGGKGQLGVA 469

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538
             V+ ++ +++ I +I IAKG +R  G+E   F   GE + L   +  L+ +Q++RDEAH
Sbjct: 470 MEVMAEVGLDD-ILLIGIAKGEERKPGLETMIFSDTGEMVNLEKDNKGLHLLQQIRDEAH 528

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR +R KA   S L++I G+G  R++ LL  FG +  +  +S + LAS+EGIS+
Sbjct: 529 RFAITGHRAKRAKARLQSSLEDIEGVGAKRRKALLTRFGGLDGVKNASIDELASVEGISQ 588

Query: 598 KIACKIYNHFH 608
            +A KIY   H
Sbjct: 589 SLAEKIYGELH 599


>gi|92118613|ref|YP_578342.1| excinuclease ABC subunit C [Nitrobacter hamburgensis X14]
 gi|119367677|sp|Q1QIR5|UVRC_NITHX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91801507|gb|ABE63882.1| Excinuclease ABC subunit C [Nitrobacter hamburgensis X14]
          Length = 690

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 288/607 (47%), Positives = 390/607 (64%), Gaps = 6/607 (0%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+M++ A  VLYVGKA N++KR+ SY        RI  MI+  + I    T TE
Sbjct: 81  PTSPGVYRMMNAARDVLYVGKAKNVRKRLSSYARPTGQVMRIARMIAATSTIEIVSTETE 140

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT  H  P + KHR + +  G YFGPFA
Sbjct: 141 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 200

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  AV +TI +LQR F +RSC DS F  RTRPCLL+QIKRC+GPCTGEI    Y   V E
Sbjct: 201 SAGAVGRTITALQRAFLVRSCTDSFFEGRTRPCLLYQIKRCAGPCTGEIDFPGYTALVRE 260

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A  FLSG +  +KE++AR M +A+    +E A ++RDRLAALS IQ+            D
Sbjct: 261 ATDFLSGRSRAVKEELAREMEKASGDLAFERAALYRDRLAALSAIQSQQGINPRTVEEAD 320

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F+++     +C++  FF  GQN G   +F + +   T  ++L  FL QFY DKP P+ I
Sbjct: 321 VFAIHQEGGYSCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLGAFLAQFYDDKPPPKVI 380

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           LLS   EE+ LL  +   + G+KV + +P++GEK++++  AL NA  +  +KL+   +  
Sbjct: 381 LLSHRIEESELLADALSIKAGHKVGVLMPQRGEKKELVAHALTNAREALGRKLADTATQS 440

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
            +L+       LPH P+RIE+YDNSHI G +AVG M+V G  G +KNQYRKFN+   ++ 
Sbjct: 441 RLLQGLATVLGLPHAPRRIEVYDNSHIQGTNAVGAMIVAGPEGLLKNQYRKFNIRSENLT 500

Query: 424 TQDDCAMMRMVLERRFSQLIKNE-ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
             DD AMMR VLERRF +L+  +  + +   + ++ + P WPD+VI+DGG GQL+A +G+
Sbjct: 501 PGDDYAMMREVLERRFKRLLTQKAADPDKADEPEKDAVPQWPDLVIIDGGLGQLNAVRGI 560

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
              L +  +++++++AKGP R AG E  F+    A+ L  RDP+LYFIQRLRDEAHRF I
Sbjct: 561 FDALGLS-QVSLMAVAKGPDRDAGRETLFLPDRPAIKLEPRDPVLYFIQRLRDEAHRFVI 619

Query: 543 TTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
            +HRK R+K      L E+ GIGP RKR LL  FGT+K I R+S   L  + GIS + A 
Sbjct: 620 GSHRKLRRKDIREAGLQEVPGIGPARKRALLHHFGTLKEIERASVADLGKVPGISAESAR 679

Query: 602 KIYNHFH 608
           KI++ FH
Sbjct: 680 KIFDFFH 686


>gi|34496760|ref|NP_900975.1| excinuclease ABC subunit C [Chromobacterium violaceum ATCC 12472]
 gi|81656372|sp|Q7NYG9|UVRC_CHRVO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|34102615|gb|AAQ58980.1| excinuclease ABC subunit C [Chromobacterium violaceum ATCC 12472]
          Length = 601

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 228/612 (37%), Positives = 327/612 (53%), Gaps = 28/612 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+MLD AG+VLYVGKA +L++R+ SY   N+ + RI  M+ QI +I  TV
Sbjct: 12  LQNLPTLPGVYRMLDAAGKVLYVGKAIDLKRRVSSYFQKNDLSPRIQLMVRQIASIETTV 71

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N+IK L PR+NIL RDDKS+PY++ +  H  P +  +R        YF
Sbjct: 72  TRSEAEALILENNLIKALAPRYNILFRDDKSYPYLMFS-GHAFPQMAYYRGEPKKPNQYF 130

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV ++I  LQ+ F LR+C D+VF +R+RPCLL+QIKRCSGPC   IS E+Y  
Sbjct: 131 GPYPNGYAVRESIQILQKVFRLRTCEDAVFANRSRPCLLYQIKRCSGPCVDHISKEEYAA 190

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241
            V  A  FL+G    L  ++ R M  A     +E A   RD++ AL+ +Q       N+ 
Sbjct: 191 DVASAVAFLNGRQSELINELTRRMTAAAEAMAFEQAAELRDQIQALARVQEKQFVASNQS 250

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +      + C+       G++ G  + F       T  +IL  F+ Q Y    
Sbjct: 251 QQDCDVVAARVRDGVPCVNLVMIRGGRHLGDKSHFPIGGEADTEQEILEAFIGQHYQHAG 310

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  ++++   +    L+    ++ G KV I     GE+R  +E A  NA  +  Q+L +
Sbjct: 311 VPAALVVNGVVD--DALQQFLQERAGRKVYIVGNPIGERRVWLEMAEKNAELAILQRLGS 368

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           + +    L    +   L     R E +D SH MG + V   VV  +      +YR+FN+ 
Sbjct: 369 KATQAQRLAQLNEVLELEDAG-RFECFDISHTMGEATVASCVVYDKGAMQPTEYRRFNIT 427

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD A MR VL RR+ +L + E                 PD V +DGGKGQ+  
Sbjct: 428 TA--APGDDYAAMREVLSRRYGKLAEGE--------------GRLPDAVFIDGGKGQVGV 471

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL +L +   + I+ IAKG +R  G+E        + L L    P L+ IQ +RDEA
Sbjct: 472 ALEVLGELGL--NLPIVGIAKGEERKPGLETLILPYLEKTLQLRQDHPALHLIQTVRDEA 529

Query: 538 HRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR RR KA  S  L++I GIG  R++ LL  FG ++ ++ +S + LA +EGIS
Sbjct: 530 HRFAITGHRARRAKARTSSTLEDIPGIGAKRRQQLLTRFGGLRGVATASVDDLAQVEGIS 589

Query: 597 KKIACKIYNHFH 608
           + +A KIYN  H
Sbjct: 590 RTLAEKIYNALH 601


>gi|294012246|ref|YP_003545706.1| excinuclease ABC subunit C [Sphingobium japonicum UT26S]
 gi|292675576|dbj|BAI97094.1| excinuclease ABC subunit C [Sphingobium japonicum UT26S]
          Length = 637

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 260/611 (42%), Positives = 371/611 (60%), Gaps = 16/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M D  G VLYVGKA  L+ R+ SY   +    R+  M++Q  ++    
Sbjct: 37  LKALPTRPGVYRMQDARGDVLYVGKARALRNRVTSYTQVDRLPKRLQRMVAQTRSMTIVT 96

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLEA +IKR +P +N+LLRDDKSFP+IL+ + H  P + KHR +   +G Y+
Sbjct: 97  TNSEAEALLLEAQLIKRFRPPYNVLLRDDKSFPFILLREDHDFPRVQKHRGARKYKGRYY 156

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  +V +TIN+LQ+ F LRSC DS F +R+RPCLL+QI+RCS PC G I    Y E
Sbjct: 157 GPFASAGSVTRTINALQKLFLLRSCTDSFFANRSRPCLLYQIRRCSAPCVGRIDDAAYGE 216

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            V +A+ FL G +  +++K+   M  A+   D+E A + RDRL AL+ IQ          
Sbjct: 217 LVKDAQDFLGGKSTAVQKKLGEAMQAASDAMDFEQAAVLRDRLKALTFIQGSQAINAEGL 276

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D F+L       CIQ  F   GQN G  +FF    +E    ++L+ F+ QFY + P 
Sbjct: 277 GDADIFALAARGGAMCIQAFFIRGGQNWGHRSFFPVHTAEVAEDEVLASFMAQFYEEVPP 336

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ IL      E  L+  +  ++ G +V+I VPK+GE+ ++I+QA  NA  +  ++L+  
Sbjct: 337 PKLILADRAPAECELMAQALTERIGSRVRIEVPKRGERTRLIKQAQRNAVEALDRRLAET 396

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L++  + F L  +P RIEIYDNSHI G  A+G MVV G  GF KN YRKFN+  
Sbjct: 397 TTQAKVLEEMVEAFGLEGVPDRIEIYDNSHIQGSHALGAMVVAGPEGFRKNAYRKFNMK- 455

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           N   +QDD AMMR + ERRF +  + +          +     WPD+V++DGGKGQLSAA
Sbjct: 456 NPATSQDDFAMMREMFERRFGRAARED---------PDRDSGEWPDLVLIDGGKGQLSAA 506

Query: 480 QGVLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           + +L+ + +E+ + +I IAKGP     G E F +  G  +   +  P+L+++QRLRDEAH
Sbjct: 507 RAILEDMGIED-VCMIGIAKGPHHGREGREVFHMPDGREISFPLNHPVLFYLQRLRDEAH 565

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HR++R KA   S LDE+ GIGP RK+ LL  FGT K +  ++ E L    G+SK
Sbjct: 566 RFAIGAHRQKRSKAITVSSLDEVPGIGPSRKKALLMHFGTAKAVKSAALEDLLKAPGVSK 625

Query: 598 KIACKIYNHFH 608
            +A ++Y++FH
Sbjct: 626 AVAQQVYDYFH 636


>gi|99082360|ref|YP_614514.1| excinuclease ABC subunit C [Ruegeria sp. TM1040]
 gi|119367839|sp|Q1GDL4|UVRC_SILST RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|99038640|gb|ABF65252.1| Excinuclease ABC subunit C [Ruegeria sp. TM1040]
          Length = 635

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 259/610 (42%), Positives = 383/610 (62%), Gaps = 15/610 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     HT RI  MISQ + + F  
Sbjct: 35  LKTLDSSPGVYRMLDHESRVLYVGKARNLRARVSNYTRP-GHTQRIETMISQTSRMMFLT 93

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP++N+LLRDDKSFPYI+++  H  P L KHR +   + S+F
Sbjct: 94  TRTETEALLLEQNLIKQLKPKYNVLLRDDKSFPYIMVSKNHAFPQLKKHRGARKGKASFF 153

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQ+ F LR+C D++F +RTRPCL +QIKRCSGPC G+IS   Y +
Sbjct: 154 GPFASAGAVNRTLNQLQKAFLLRNCTDTMFENRTRPCLQYQIKRCSGPCVGKISQADYAD 213

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            V +A++FL+G +  ++E++   M  A+   +YE A   RDR+ AL+ +Q+         
Sbjct: 214 SVRDAERFLAGRSTKIQEELGAEMQAASEAMEYERAAALRDRIKALTQVQSAQGINPRGV 273

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           +  D   L+    LAC+Q  F    QN G   F+ +   + + A+++  F+ QFY +K  
Sbjct: 274 SEADIIGLHLENGLACVQVFFIRANQNWGNQDFYPRVAEDMSAAEVMEAFIGQFYDNKDV 333

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++LS++ E   L+ ++  ++   KV+I VP++GEK +++  A+ NA  S  +++S  
Sbjct: 334 PRQLILSDDIENADLMAVALSEKARRKVEIVVPQRGEKTELVASAVRNARESLARRMSES 393

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L+     F L   P RIE+YDNSHI G +AVG M+V+G  GF+KN YRKFN+  
Sbjct: 394 ATQAKLLRGIADAFGLEAPPNRIEVYDNSHIQGTNAVGGMIVMGPEGFMKNAYRKFNIKD 453

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            +V   DD  MM+ VL RRFS+L+K +          +     WPD++++DGG GQ+SA 
Sbjct: 454 GEVIAGDDFGMMKAVLNRRFSRLLKED---------PDRQKGMWPDLLLIDGGAGQVSAV 504

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++++  V++ I ++ +AKG  R  G E+F+     A  L   DP+LYFIQR+RDEAHR
Sbjct: 505 AEIMEEHGVQD-IPMVGVAKGVDRDHGKEEFYRPGENAFALQRNDPVLYFIQRMRDEAHR 563

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R K+   +PLD+I G+G  RK+ LL  FG+ K +SR++   L +++G+S  
Sbjct: 564 FAIGTHRAKRAKSLVANPLDDIPGVGARRKKALLTHFGSAKAVSRANLSDLKAVDGVSDA 623

Query: 599 IACKIYNHFH 608
           +A  IYN+F 
Sbjct: 624 LAETIYNYFQ 633


>gi|254514446|ref|ZP_05126507.1| excinuclease ABC, C subunit [gamma proteobacterium NOR5-3]
 gi|219676689|gb|EED33054.1| excinuclease ABC, C subunit [gamma proteobacterium NOR5-3]
          Length = 615

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/610 (36%), Positives = 336/610 (55%), Gaps = 23/610 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVYQM D  G +LYVGKA NL+ R+ SY  ++    +   ++ +I +I+ TVT 
Sbjct: 19  TLTTRCGVYQMYDGEGELLYVGKARNLKNRVSSYFRNSGLNAKTVALVMRIRDIQVTVTS 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK  KP +NILLRDDKS+PYI ++ + + P L  HR     +G YFGP
Sbjct: 79  TEADALLLEHNLIKTHKPPYNILLRDDKSYPYIFLSSEDRFPRLTVHRGRKRKKGRYFGP 138

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  AV ++++ LQ+ F +R C DS FR+R+RPCL  QI RC+ PC   +S+++Y E V
Sbjct: 139 YPSAGAVRQSMHFLQKVFKVRQCEDSYFRNRSRPCLQHQIDRCTAPCVDLVSAQEYAEQV 198

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242
            + + FL G +  L+ ++A +M +A  +  YE A + RD++  L  +QN       +  +
Sbjct: 199 EKTELFLLGKSRELQIRLADDMEKAAAELAYEKAALLRDQIQHLQQVQNTQGIEGGHGDL 258

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKPCP 300
           D  +        C+Q  F    +  G+ +F+ K   EST A++L  FL QFY    +  P
Sbjct: 259 DVVAASMEGGRCCLQVLFVRDARVLGSKSFYPKLRLESTEAEVLEAFLPQFYLSGQQRIP 318

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LLS   +  + L   F  + G KV +    +  + + ++ A+  A  +    L+ + 
Sbjct: 319 PEVLLSHSPDNAATLSEVFSGRAGRKVVLRERVREARARWLQLAVQTAQTNLIAHLAGKQ 378

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           + Q  L+   +   +   P+RIE +D SH  G + V   VV   +G  K+ YR+FN+   
Sbjct: 379 TTQERLQLLQETLEMEVHPQRIECFDISHSSGEATVASCVVFDASGARKSDYRRFNI--E 436

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           +++  DD A M   L RRF +L                   + PD++++DGGKGQ++ A 
Sbjct: 437 NIEGGDDYAAMHQALTRRFRRLRDEG--------------ATVPDILLIDGGKGQVTQAL 482

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHR 539
            VL+ L+V+  I ++ +AKG  R AG E   +   G  L L   +P L+ IQ++RDEAHR
Sbjct: 483 SVLEDLDVKG-IEVVGVAKGTTRKAGFETLILGDSGRELQLPSDNPALHLIQQIRDEAHR 541

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR RR K    S L+ I G+G  R+R LL+ FG+   +  +S E L  I GIS  
Sbjct: 542 FAITGHRNRRDKQRRQSSLESIAGVGAKRRRELLRHFGSAGAVENASVEELRKIPGISAN 601

Query: 599 IACKIYNHFH 608
           IA  IY+H H
Sbjct: 602 IAQTIYDHLH 611


>gi|84499782|ref|ZP_00998070.1| excinuclease ABC subunit C [Oceanicola batsensis HTCC2597]
 gi|84392926|gb|EAQ05137.1| excinuclease ABC subunit C [Oceanicola batsensis HTCC2597]
          Length = 630

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 272/611 (44%), Positives = 379/611 (62%), Gaps = 17/611 (2%)

Query: 6   MPE---CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +P     PGVY+MLD   RVLYVGKA NL+ R+ +Y   + H+ RIT MI +  ++ F  
Sbjct: 28  LPTLDSSPGVYRMLDADSRVLYVGKARNLRARVSNYARPSGHSGRITRMIRETASMMFLT 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T  H    + KHR +   +GSY+
Sbjct: 88  TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVTKDHDFAQIVKHRGAKKRKGSYY 147

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFA   AV +T+N LQ+ F LR+C+DS+F  RTRPCLL+QIKRCS PCTGEIS   Y  
Sbjct: 148 GPFAGAGAVNRTLNQLQKVFLLRNCSDSMFAGRTRPCLLYQIKRCSAPCTGEISKADYAA 207

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V +A++FL G +  ++E +   M  A+   ++E A   RDR+ AL+ +Q+         
Sbjct: 208 SVADAERFLQGRSTQVQETLGAEMAAASEAMEFERAAALRDRIRALTQVQSAQGVNPRTT 267

Query: 243 ---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +L+     AC+Q  F    QN G   F+ +  +E + A++L  FL QFY  K  
Sbjct: 268 PEADVIALHMEGGQACVQVFFIRANQNWGNRDFYPRAGAEVSEAEVLEAFLGQFYDTKDP 327

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
              ILLS   E   L+E +   + G KV++ VP++GEK +++E A  NA  S  +K+S  
Sbjct: 328 ARLILLSHPIENADLMEQALGDKLGRKVEVAVPQRGEKAELVENAARNARESLGRKMSES 387

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L    + F L  +P+RIE+YDNSHIMG +AVG M+V G +GF+K+QYRKFN+  
Sbjct: 388 ATQARLLAGVQEAFGLERVPQRIEVYDNSHIMGTNAVGAMIVAGPDGFMKSQYRKFNIKG 447

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +D+   DD  MM+ VL RR ++L+K +          + +   WPD++++DGG GQ+SA 
Sbjct: 448 DDLTPGDDFGMMKEVLTRRLTRLLKED---------PDGTNGLWPDLLLIDGGAGQVSAV 498

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           Q +L+++ V   + +  +AKG  R  G E+F         L M DP+LYFIQRLRDEAHR
Sbjct: 499 QSILEEMGV-GDLPMAGVAKGVDRDHGKEEFHRPGRSPFALRMNDPVLYFIQRLRDEAHR 557

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   +PLDEI G+G  RKR LL  FG+ K +SR+    L +++GIS  
Sbjct: 558 FAIGTHRAKRAKAVSATPLDEIPGVGATRKRALLAHFGSAKAVSRAGLSDLKAVDGISDA 617

Query: 599 IACKIYNHFHK 609
           +A  IY HFH+
Sbjct: 618 MAETIYAHFHE 628


>gi|319898743|ref|YP_004158836.1| excinuclease ABC subunit C [Bartonella clarridgeiae 73]
 gi|319402707|emb|CBI76254.1| excinuclease ABC subunit C [Bartonella clarridgeiae 73]
          Length = 643

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 305/611 (49%), Positives = 421/611 (68%), Gaps = 5/611 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+ML+  G +LYVGKA NL+KR+ +Y     H +RITHMI + N++ F VT
Sbjct: 32  KNLPHKPGVYRMLNENGDILYVGKAQNLKKRVSNYTREQGHNNRITHMIRETNHMEFVVT 91

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL PRFN+LLRDDK+FPYI+ITD H+ PALYKHR + T +  YFG
Sbjct: 92  DTETEALLLEANLIKRLHPRFNVLLRDDKTFPYIIITDDHRAPALYKHRGARTRKAHYFG 151

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS +AV +TIN LQR F LR+C DSV  + TRPCLL+QIKRCS PCT EIS   Y++ 
Sbjct: 152 PFASSEAVTQTINVLQRAFLLRTCTDSVLENCTRPCLLYQIKRCSAPCTYEISDSDYLQL 211

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V +AK FLSG + ++K  + + M++A    D+E AI +RDRL+ALSHIQ+H         
Sbjct: 212 VKKAKAFLSGKSQSVKNDMIQAMHKAAENLDFEQAIAYRDRLSALSHIQSHQSINPQIVK 271

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++   + + CIQ  FF  GQN G  ++F K D   ++A+IL+ FL QFY +KP P
Sbjct: 272 EADVFAIAQQEGMTCIQVFFFRMGQNWGNQSYFPKADPSFSSAEILASFLTQFYDNKPIP 331

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLS+  EE +LL  +   +  +K+ +++PK+GE++ ++  A  NA+ +  +KL    
Sbjct: 332 KLILLSDTIEEKALLTEALSLKANHKISLSLPKKGERKALVNHAYTNAYEALKRKLFETS 391

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +H+ +L+   + F L H P+RIE+YDNSHI G +AVG M+V  + GFVKNQYRKFN+   
Sbjct: 392 THKKLLQSIVETFQLSHTPRRIEVYDNSHITGTNAVGVMIVFDQTGFVKNQYRKFNIRST 451

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK-KQEYSFPSWPDVVILDGGKGQLSAA 479
           ++K  DD  MM+ V+ERRF  LIK     N +     E S P WPD++++DGG+GQ++  
Sbjct: 452 NIKPGDDLGMMKEVIERRFLCLIKTYGLPNKNKNIGYESSCPLWPDLILIDGGQGQINIT 511

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             VL +L +++ +T+I IAKG  R AG+E+FF+K  +   L+  DPILYF+QRLRDEAHR
Sbjct: 512 STVLSELGLDDFVTVIGIAKGVDRKAGLERFFIKGKQPFTLSPHDPILYFLQRLRDEAHR 571

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA+ TH+ +RKK    +PLDEI  IGP+RKR LL  FG+ K +SR+S E L  ++GIS  
Sbjct: 572 FAVGTHKAKRKKETFKNPLDEIEKIGPIRKRALLNYFGSSKAVSRASVEDLKKVQGISNA 631

Query: 599 IACKIYNHFHK 609
           IA KI+N+F++
Sbjct: 632 IAQKIHNYFNE 642


>gi|315121799|ref|YP_004062288.1| excinuclease ABC subunit C [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495201|gb|ADR51800.1| excinuclease ABC subunit C [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 615

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 497/614 (80%), Positives = 557/614 (90%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           S+Q+PE PGVYQMLD AG+VLYVGKAYNLQKR+KSY   NNHTHRI  MI+Q  N+ FT 
Sbjct: 2   SKQIPESPGVYQMLDAAGKVLYVGKAYNLQKRVKSYTQLNNHTHRIMCMINQTRNLNFTT 61

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TEVEALLLEA+MIKRLKPRFNILLRDDKSFPYI+ITD+HKIP+LYKHR    ++GSYF
Sbjct: 62  TRTEVEALLLEASMIKRLKPRFNILLRDDKSFPYIIITDEHKIPSLYKHRGPPVMKGSYF 121

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFASVDAVEKTINSLQR FFLRSC+D++F  RTRPCLLFQIKRCSGPCTGEIS+EKYME
Sbjct: 122 GPFASVDAVEKTINSLQRAFFLRSCSDNIFGCRTRPCLLFQIKRCSGPCTGEISAEKYME 181

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
           FV+EAK FLSG NH+LK KIA+ MN+ATL+EDYESAIIHRDRL ALSHIQNH++SI   M
Sbjct: 182 FVYEAKDFLSGRNHDLKRKIAQKMNKATLEEDYESAIIHRDRLVALSHIQNHSESINETM 241

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           DCFSLYH+KN+ACIQT FF FGQNRG+ TFFLKTD +STNAQI SYFLRQFY DKPCPE+
Sbjct: 242 DCFSLYHDKNIACIQTFFFRFGQNRGSYTFFLKTDPQSTNAQIFSYFLRQFYEDKPCPES 301

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILLSE+AEE+ LLEISF ++YG+KVKIT+PKQGEK+KIIEQALINA  SH QK++ EISH
Sbjct: 302 ILLSEKAEESQLLEISFCEKYGHKVKITIPKQGEKKKIIEQALINARNSHAQKIALEISH 361

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           Q ++KDF +KFALP+IPKRIEIYDNSH+MGCSAVGCMVV GE+G +KNQYRKFNLHP+DV
Sbjct: 362 QAMIKDFAEKFALPYIPKRIEIYDNSHVMGCSAVGCMVVAGESGLIKNQYRKFNLHPDDV 421

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           KTQDDCAMMR+VLERRFSQLIKNEEN NF PKKQEYSFPSWPDVVILDGG+GQLSAAQ V
Sbjct: 422 KTQDDCAMMRVVLERRFSQLIKNEENSNFPPKKQEYSFPSWPDVVILDGGRGQLSAAQSV 481

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
            KKLN+ENRITIISIAKG +R+AGMEKFFV+ G+ L+L+MRDP+LYFIQ+LRDEAHRFA+
Sbjct: 482 FKKLNIENRITIISIAKGQQRNAGMEKFFVENGKELMLHMRDPVLYFIQKLRDEAHRFAV 541

Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           TTHRKRRKKA+Y+PL+EINGIGPLRKR LLQSFGTVKMISRSSPETLAS EGISKKIACK
Sbjct: 542 TTHRKRRKKASYNPLEEINGIGPLRKRSLLQSFGTVKMISRSSPETLASTEGISKKIACK 601

Query: 603 IYNHFHKNTSHTPT 616
           IY HFHKNT    T
Sbjct: 602 IYTHFHKNTQCKST 615


>gi|88705103|ref|ZP_01102815.1| UvrABC system protein C [Congregibacter litoralis KT71]
 gi|88700798|gb|EAQ97905.1| UvrABC system protein C [Congregibacter litoralis KT71]
          Length = 627

 Score =  562 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/612 (36%), Positives = 332/612 (54%), Gaps = 23/612 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +    GVYQM D AG +LYVGKA NL+ R+ SY  ++    +   ++ +I +I+ TV
Sbjct: 29  LKTLTSRCGVYQMYDGAGELLYVGKARNLKNRVSSYFRNSGLNAKTVALVMRIRDIQVTV 88

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE +ALLLE N+IK  KP +NILLRDDKS+PYI ++ + + P L  HR     +G YF
Sbjct: 89  TSTEADALLLEHNLIKTHKPPYNILLRDDKSYPYIFLSSEDRFPRLAVHRGRKRKKGRYF 148

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ S  AV ++++ LQ+ F +R C DS FR+R+RPCL  QI RC+ PC   +S E+Y E
Sbjct: 149 GPYPSAGAVRQSMHFLQKVFKVRQCEDSYFRNRSRPCLQHQIDRCTAPCVDLVSPEEYGE 208

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            V + + FL G +  L+ ++A +M QA  +  YE A + RD++  L  +QN       + 
Sbjct: 209 QVEKTELFLLGKSRELQVRLADDMEQAAAELAYEKAAVLRDQIQHLQQVQNTQGIEGGHG 268

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-- 298
            +D  +        C+Q  F    +  G+ +F+ K   ES   ++L  FL QFY +    
Sbjct: 269 DLDVVAAAMEGGQCCLQVLFVRDARVLGSKSFYPKLRLESAEKEVLEAFLPQFYLNGEQR 328

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  +++S   +  + L   F  + G KV +    +  + + ++ A   A  +    L+ 
Sbjct: 329 LPPELIVSHVPDNAATLAEVFTDKAGRKVVLRERVREARARWLQLAAQTAETNLIAHLAG 388

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           + + Q  L+   +   +   P+RIE +D SH  G + V   VV    G  K+ YR+FN+ 
Sbjct: 389 KQTTQERLQVLQEALEMEVHPQRIECFDISHSSGEATVASCVVFDGGGARKSDYRRFNIE 448

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              ++  DD A M   L RRF +L     +L              PD++++DGGKGQ++ 
Sbjct: 449 G--IEGGDDYAAMHQALTRRFRRLRDEGASL--------------PDILLIDGGKGQVTQ 492

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEA 537
           A  VLK L V N + ++ +AKG  R AG E   +   G  L L   +P L+ IQ++RDEA
Sbjct: 493 ALTVLKDLQV-NGVEVVGVAKGTTRKAGFETLILGDSGRELQLPGDNPALHLIQQIRDEA 551

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR RR K    S L+ I G+G  R+R LL+ FG+   +  +S E L  I GIS
Sbjct: 552 HRFAITGHRNRRDKQRKQSSLESIAGVGAKRRRELLRHFGSAAGVENASVEELRKISGIS 611

Query: 597 KKIACKIYNHFH 608
             +A  IY+H H
Sbjct: 612 ANMAQTIYDHLH 623


>gi|209542234|ref|YP_002274463.1| excinuclease ABC subunit C [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529911|gb|ACI49848.1| excinuclease ABC, C subunit [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 629

 Score =  562 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 272/613 (44%), Positives = 367/613 (59%), Gaps = 11/613 (1%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           ++ + MP  PGVY+ML   G VLYVGKA  L++R+ SY H +    R+  M+S+   +  
Sbjct: 19  LALQTMPLSPGVYRMLGEKGEVLYVGKARILKRRVTSYTHLSKLPERLRRMVSETVTMEI 78

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE EALLLEAN IKR+KPRFNILLRDDKS+P+I++TD  + P + KHR       S
Sbjct: 79  VTTHTEAEALLLEANYIKRMKPRFNILLRDDKSYPWIMLTDGAEFPQVTKHRGKPVKGAS 138

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPFAS  AV +T+N +QR F LR+C+DSVF  RTRPCLLFQIKRCS PC   I   +Y
Sbjct: 139 YWGPFASAWAVNQTLNLIQRVFLLRTCSDSVFASRTRPCLLFQIKRCSAPCVARIGQAEY 198

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238
              V +A+ FLSG    ++E++ R M  A    ++E A   RDR+   + +Q+ +     
Sbjct: 199 AHLVEQARAFLSGQRGGIREELVREMEAAAASLEFERAATIRDRIRGFAAMQDSSVINPA 258

Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
             +  D  ++      +CIQ  F   G+N G   FF     +     I+  FL QFY DK
Sbjct: 259 SLDDADIVAIAQAAGHSCIQVFFIRGGRNNGNRAFFPAHARDEAAPDIVGAFLAQFYDDK 318

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
           P P  ILL+ E  E  L+  +   + G KV+I VPK+GEKR ++E A  NA  +  +KL+
Sbjct: 319 PPPAQILLNCEIAEHDLMADALGIKRGRKVEILVPKRGEKRAVVEHAETNAREALERKLA 378

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              +   +L+     F L   P+RIEIYDNSHIMG +A G MVV G  GF K  YRKF++
Sbjct: 379 ESTAQARLLEGMADLFGLDAPPRRIEIYDNSHIMGTNAYGVMVVAGPEGFDKRSYRKFSI 438

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   DD AMMR VLERRFS+ ++  ++              WPD+V++DGG GQ S
Sbjct: 439 RGPITPG-DDFAMMREVLERRFSRALRERDDSAGASSP-----ADWPDIVLIDGGAGQYS 492

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A + VL +L V + +T+++IAKGP R AG E F +       L  RDP+LY++QRLRDEA
Sbjct: 493 AVRAVLDELGVTD-VTLVAIAKGPDRDAGREWFHMADRPPFQLPPRDPVLYYLQRLRDEA 551

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAITTHR  R KA   S LDEI G+G  RKR LL  FG+ + + ++    L + +GI+
Sbjct: 552 HRFAITTHRAGRSKALVKSELDEIPGVGAARKRALLNQFGSARGVRQAGLAELEATQGIN 611

Query: 597 KKIACKIYNHFHK 609
           ++ A  +Y HFH 
Sbjct: 612 RETARVVYGHFHP 624


>gi|162147602|ref|YP_001602063.1| excinuclease ABC subunit C [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786179|emb|CAP55761.1| putative UvrABC system protein C (Protein uvrC) (Excinuclease ABC
           subunit C) [Gluconacetobacter diazotrophicus PAl 5]
          Length = 637

 Score =  562 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 272/613 (44%), Positives = 367/613 (59%), Gaps = 11/613 (1%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           ++ + MP  PGVY+ML   G VLYVGKA  L++R+ SY H +    R+  M+S+   +  
Sbjct: 27  LALQTMPLSPGVYRMLGEKGEVLYVGKARILKRRVTSYTHLSKLPERLRRMVSETVTMEI 86

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE EALLLEAN IKR+KPRFNILLRDDKS+P+I++TD  + P + KHR       S
Sbjct: 87  VTTHTEAEALLLEANYIKRMKPRFNILLRDDKSYPWIMLTDGAEFPQVTKHRGKPVKGAS 146

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPFAS  AV +T+N +QR F LR+C+DSVF  RTRPCLLFQIKRCS PC   I   +Y
Sbjct: 147 YWGPFASAWAVNQTLNLIQRVFLLRTCSDSVFASRTRPCLLFQIKRCSAPCVARIGQAEY 206

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238
              V +A+ FLSG    ++E++ R M  A    ++E A   RDR+   + +Q+ +     
Sbjct: 207 AHLVEQARAFLSGQRGGIREELVREMEAAAASLEFERAATIRDRIRGFAAMQDSSVINPA 266

Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
             +  D  ++      +CIQ  F   G+N G   FF     +     I+  FL QFY DK
Sbjct: 267 SLDDADIVAIAQAAGHSCIQVFFIRGGRNNGNRAFFPAHARDEAAPDIVGAFLAQFYDDK 326

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
           P P  ILL+ E  E  L+  +   + G KV+I VPK+GEKR ++E A  NA  +  +KL+
Sbjct: 327 PPPAQILLNCEIAEHDLMADALGIKRGRKVEILVPKRGEKRAVVEHAETNAREALERKLA 386

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              +   +L+     F L   P+RIEIYDNSHIMG +A G MVV G  GF K  YRKF++
Sbjct: 387 ESTAQARLLEGMADLFGLDAPPRRIEIYDNSHIMGTNAYGVMVVAGPEGFDKRSYRKFSI 446

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   DD AMMR VLERRFS+ ++  ++              WPD+V++DGG GQ S
Sbjct: 447 RGPITPG-DDFAMMREVLERRFSRALRERDDSAGASSP-----ADWPDIVLIDGGAGQYS 500

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A + VL +L V + +T+++IAKGP R AG E F +       L  RDP+LY++QRLRDEA
Sbjct: 501 AVRAVLDELGVTD-VTLVAIAKGPDRDAGREWFHMADRPPFQLPPRDPVLYYLQRLRDEA 559

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAITTHR  R KA   S LDEI G+G  RKR LL  FG+ + + ++    L + +GI+
Sbjct: 560 HRFAITTHRAGRSKALVKSELDEIPGVGAARKRALLNQFGSARGVRQAGLAELEATQGIN 619

Query: 597 KKIACKIYNHFHK 609
           ++ A  +Y HFH 
Sbjct: 620 RETARVVYGHFHP 632


>gi|49474108|ref|YP_032150.1| excinuclease ABC subunit C [Bartonella quintana str. Toulouse]
 gi|81647123|sp|Q6G041|UVRC_BARQU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|49239612|emb|CAF25970.1| Excinuclease ABC subunit c [Bartonella quintana str. Toulouse]
          Length = 678

 Score =  562 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 304/613 (49%), Positives = 409/613 (66%), Gaps = 7/613 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+M D  G VLY+GKA NL+KR+ +Y     H +RIT MI    ++ F VT
Sbjct: 65  KHLPHKPGVYRMFDENGNVLYIGKARNLKKRVSNYTCEQRHNNRITRMIRATYHMEFVVT 124

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL PRFN+LLRDDKSFPYI+IT+ H+ PALYKHR + T +  YFG
Sbjct: 125 HTETEALLLEANLIKRLHPRFNVLLRDDKSFPYIIITENHRAPALYKHRGARTRKAHYFG 184

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN LQR F LR+C DSV  +RTRPCLL+QIKRCS PCT EI+   Y E 
Sbjct: 185 PFASSSAVTQTINVLQRAFLLRTCTDSVLENRTRPCLLYQIKRCSAPCTHEINENDYREL 244

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V  AK FLSG + ++K  + + M++A    D+E A ++RDRL+ALSHIQ+H         
Sbjct: 245 VRGAKAFLSGKSQSVKNDMIQAMHKAAEDLDFEQAAVYRDRLSALSHIQSHQGINPQTIE 304

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++     + CIQ  FF   QN G  ++F K D   + ++IL+ FL QFY DKP P
Sbjct: 305 EADVFAIAQKGGITCIQVFFFRMRQNWGNRSYFPKADPSFSRSEILASFLAQFYDDKPLP 364

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLSEE EE +LL  +F  +   K+ +++PKQGE++ ++  A INA+ +   KL+   
Sbjct: 365 KLILLSEEIEEKTLLAEAFSLKANRKIFLSLPKQGERKTLVNHAYINAYEALGHKLAETA 424

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +H  +L+   + F LP  P RIE+YDNSH+MG +AVG M+V  + GF+KNQYRKFN+   
Sbjct: 425 THTKLLQGIAEVFQLPQTPHRIEVYDNSHLMGTNAVGAMIVADQMGFLKNQYRKFNIRST 484

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEE---NLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
           D+   DD  MM+ V++RRFS+LIK        N    + E  F  WP+++++DGG+GQ++
Sbjct: 485 DITPGDDFGMMKEVIKRRFSRLIKEHGLPHESNSIKGEDEDCFSIWPNLILIDGGEGQIN 544

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           +   +L +L +++ IT++ IAKG  R AG E+FF+K      L   DPILYF+QRLRDEA
Sbjct: 545 SVHTILSELKLDDFITVVGIAKGADRGAGHERFFIKGKTPFTLPPHDPILYFLQRLRDEA 604

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI THR +RKKA   +PLDEI  IG  RKR LL  FG+ K+++ +S E L  + GIS
Sbjct: 605 HRFAIKTHRIKRKKATLKNPLDEIKNIGSTRKRALLHHFGSAKIVASASLEDLTKVTGIS 664

Query: 597 KKIACKIYNHFHK 609
             IA KI+NHF++
Sbjct: 665 VTIAQKIHNHFNE 677


>gi|254474587|ref|ZP_05087973.1| excinuclease ABC, C subunit [Ruegeria sp. R11]
 gi|214028830|gb|EEB69665.1| excinuclease ABC, C subunit [Ruegeria sp. R11]
          Length = 653

 Score =  562 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 262/610 (42%), Positives = 380/610 (62%), Gaps = 15/610 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     H+ RI  MIS   ++ F  
Sbjct: 52  LKTLDNSPGVYRMLDSESRVLYVGKARNLRARVSNY-SRPGHSPRIEKMISLTASMMFLT 110

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+   H  P + KHR +   +GSYF
Sbjct: 111 TRTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHAFPQIKKHRGTRREKGSYF 170

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQ+ F LR+C++++F  RTRPCL +QIKRC+ PCTGEIS+E Y  
Sbjct: 171 GPFASAGAVNRTLNQLQKAFLLRNCSNAMFESRTRPCLQYQIKRCTAPCTGEISAEDYAA 230

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V +A++FLSG +  ++E++A  M +A+   ++E A   RDR+ AL+ +Q          
Sbjct: 231 SVRDAERFLSGRSTKIQEELAEQMAEASEAMEFERAAALRDRIKALTQVQTSQGINPRGV 290

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D   L+ +   AC+Q  F    QN G   F+ +   +   A+++  FL QFY +K  
Sbjct: 291 AEADVIGLHIDSGQACVQVFFIRANQNWGNQDFYPRLSGDVAAAEVMEAFLGQFYDNKEP 350

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++LS+E E   L+E +  ++ G KV+I VP++GEK +++  A+ NA  S  ++++  
Sbjct: 351 PRQLILSDEIENCDLMEQALSEKAGRKVEILVPQRGEKTELVAGAVRNARESLARRMAES 410

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L+     F L   P+RIE+YDNSHI G  AVG M+V G  GF+KN YRKFN+  
Sbjct: 411 ATQAKLLRGVADAFGLEGPPQRIEVYDNSHIQGSHAVGAMIVSGPEGFMKNAYRKFNIKG 470

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +++   DD  MM+ VL RRFS+L+K +          +     WPD++++DGG GQ+SA 
Sbjct: 471 DELTPGDDFGMMKEVLNRRFSRLLKED---------PDKEKGLWPDLLLIDGGAGQVSAV 521

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++ +  V++ I ++ +AKG  R  G E+F         L   DP+LYF+QRLRDEAHR
Sbjct: 522 AEIMAERGVDD-IPMVGVAKGVDRDHGKEEFHRLGERPFALQRNDPVLYFVQRLRDEAHR 580

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   +PLDE+ G+G  RKR LL  FG+ K +SR++   L ++EG+S  
Sbjct: 581 FAIGTHRAKRAKAMGANPLDEVPGVGAARKRALLAHFGSAKAVSRANLADLTAVEGVSAA 640

Query: 599 IACKIYNHFH 608
           +A +IY+ FH
Sbjct: 641 LAQRIYDFFH 650


>gi|323701485|ref|ZP_08113158.1| excinuclease ABC, C subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323533494|gb|EGB23360.1| excinuclease ABC, C subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 617

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 210/620 (33%), Positives = 332/620 (53%), Gaps = 18/620 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PGVY   D   R++YVGKA +L+ R++SY  S + + ++  M+ +  +I + 
Sbjct: 6   KIKNIPARPGVYLYKDEEDRIIYVGKAVSLKNRVRSYFQSGDQSPKVKAMLKRAVDIEYI 65

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +EVEAL+LE N+IK  +P++N+LL+DDK++PYI IT + + P L   R        Y
Sbjct: 66  VTDSEVEALILENNLIKEHRPKYNVLLKDDKTYPYIKITLQEEFPRLVITRRVIKDGARY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF +V AV +TI  L++ F LR+C       R RPCL F IKRC GPC   +   +Y 
Sbjct: 126 FGPFTNVGAVNETIRLLKKIFPLRTCKQRELAPRDRPCLNFHIKRCLGPCCNLVDRARYR 185

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + V+E   FL G   +L +++   M +A    ++E A   RD+L A+  +      +   
Sbjct: 186 DMVNEVVLFLEGRQEDLIKRLRLRMEEAAENLEFEKAAELRDQLLAIEKVVERQKVVSTD 245

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  ++    + AC+   F   G+  G   +FL+        +++S F+++FY+   
Sbjct: 246 LVDQDVIAMARGFDEACLTVFFVRGGKLIGREPYFLEGTDNMERGEVMSSFIQRFYSQTE 305

Query: 299 -CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHT 353
             P  ILLSE+ E+  L+        G KV I VP++G+K K++E A  NA     ++  
Sbjct: 306 FVPAEILLSEDIEDKQLISTWLSGLRGSKVTIKVPQRGDKHKLVEMAAQNALLSLEQAQL 365

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           ++ +   +    L + T    L   P+R+E YD S+  G  +V  MVV  E    K+QYR
Sbjct: 366 ERQAGRDAIDGALAELTAALGLERPPRRMECYDISNTQGTESVASMVVFEEGKPAKDQYR 425

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDGG 472
           +F +    V+  +D A M+  L RR ++  + +  ++          F   PD++I+DGG
Sbjct: 426 RFKIRT--VEGPNDFASMKETLSRRLAKAREEQTLIDAGQLPAGRAKFSRLPDLIIIDGG 483

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQLSAA+  + +      I    +AK  +       F   + + + L      L  +QR
Sbjct: 484 KGQLSAAREAMLEQGFA-HIPTFGLAKEEEL-----LFAPGRPDPIRLPRESRGLQMLQR 537

Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFA+T HR+ RKK    S LDEI GIGP+R+R L +++ T++ I ++S E LA 
Sbjct: 538 LRDEAHRFAVTYHRQLRKKRNLKSVLDEIEGIGPVRRRELYKAYKTLEAIKQASVEELAR 597

Query: 592 IEGISKKIACKIYNHFHKNT 611
           + G++ K A  +Y +F + T
Sbjct: 598 VPGMNSKSAEAVYRYFREET 617


>gi|148557385|ref|YP_001264967.1| excinuclease ABC subunit C [Sphingomonas wittichii RW1]
 gi|148502575|gb|ABQ70829.1| Excinuclease ABC subunit C [Sphingomonas wittichii RW1]
          Length = 642

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 262/610 (42%), Positives = 368/610 (60%), Gaps = 14/610 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M D  G VLYVGKA  L+ R+ +Y        R++ M++Q  ++    
Sbjct: 40  LKTLPARPGVYRMQDARGDVLYVGKARALKNRVANYTQVARLPKRLSRMVAQTRSMTIVT 99

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLEA +IKR +P +N+LLRDDKSFP+IL+ + H  P + KHR +   +G YF
Sbjct: 100 TNSEAEALLLEAQLIKRYRPPYNVLLRDDKSFPFILLREDHAFPRIQKHRGARRAKGQYF 159

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  +V +T+N+LQ+ F LRSC DS F +R RPCLL+QIKRCS PC G I    Y E
Sbjct: 160 GPFASAGSVTRTLNALQKLFLLRSCTDSFFANRDRPCLLYQIKRCSAPCVGRIDEADYAE 219

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V ++K FL+G +  +++K+   M+ A    DYE A ++RDRL AL+ IQ          
Sbjct: 220 LVDDSKAFLAGKSTQVQKKLGEAMSAAAEAMDYELAAVYRDRLRALTFIQGSQAINAEGV 279

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D F+L       CIQ  F   GQN G   FF    ++    ++L+ FL QFY + P 
Sbjct: 280 ADADVFALDCKAGTVCIQAFFIRGGQNWGHRAFFPAHTADVPEPEVLASFLMQFYEEVPP 339

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  +L+  E  E  LL  +  ++ G KV+I VP++GE+RK++EQA  NA  +  ++L+  
Sbjct: 340 PRLVLVGGEPAEAELLAQALGERAGRKVQIKVPQRGEQRKLMEQARRNAREALDRRLAES 399

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   I ++    F L   P RIE+YDNSHIMG + VG M+V G  GF K  YRKFN+  
Sbjct: 400 TTQGRIFQEMADLFELEGPPDRIEVYDNSHIMGTNMVGAMIVAGPEGFRKGSYRKFNIKR 459

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            +    DD AMMR VLERRF++L K +          E     WPD++++DGGKGQL A 
Sbjct: 460 PETAPGDDFAMMREVLERRFARLEKED---------PERRSGEWPDLLLIDGGKGQLGAV 510

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             VL+++ V++ + ++ I+KGP R+AG E F +  G   +L    P+L+ +QRLRDEAHR
Sbjct: 511 CEVLEEMGVQD-VPVVGISKGPDRNAGREHFHLPGGREAMLPPNSPLLFHLQRLRDEAHR 569

Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI  HR +R  +   SPLD++ GIGP RK+ LL  FGT + +  +S E L    G+S  
Sbjct: 570 FAIGAHRTKRAASFTKSPLDDVPGIGPARKKALLMHFGTARAVRAASLEDLERAPGVSSA 629

Query: 599 IACKIYNHFH 608
           +A  I++HFH
Sbjct: 630 MARAIHDHFH 639


>gi|329113352|ref|ZP_08242133.1| UvrABC system protein C [Acetobacter pomorum DM001]
 gi|326697177|gb|EGE48837.1| UvrABC system protein C [Acetobacter pomorum DM001]
          Length = 637

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 275/613 (44%), Positives = 377/613 (61%), Gaps = 15/613 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + + MP  PGVY+ML   G VLYVGKA  L+KR+ SY H N    R+  M+S+   +   
Sbjct: 32  ALKTMPLSPGVYRMLGAKGEVLYVGKALALKKRVTSYTHINRLPERLRRMVSETVAMEIV 91

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEAN IKR+KPRFNILLRDDKS+P++++TD H  P + KHR  +    S 
Sbjct: 92  TTHTEAEALLLEANYIKRMKPRFNILLRDDKSYPWLMLTDAHAFPQIAKHRGKAIKGASL 151

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFAS  AV +T+N +QR F LRSC D+VF  RTRPCLL+QIKRCSGPC   I  E Y 
Sbjct: 152 WGPFASAWAVNQTLNLIQRVFLLRSCTDAVFNARTRPCLLYQIKRCSGPCVDRIDQEAYG 211

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           + V +A++FLSG +  L+E + + MN A    D+E A + RDR+ AL+ +Q  +      
Sbjct: 212 KLVEQAREFLSGKDTALRETLGQEMNAAAEALDFERAAVLRDRIRALAQMQESSVINPAS 271

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +L+     ACIQ  F   G+N G+ +FF     +++ A +LS F+ QFY DKP
Sbjct: 272 LQDADVLALWQEAGHACIQVFFIRGGRNNGSRSFFPAHTQDASPADVLSAFIAQFYDDKP 331

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
           CP  IL++ E  E+ LL  +   + G KV+I  P++GEK+++++ A+ NA  + ++KL+ 
Sbjct: 332 CPAQILVNYELPESLLLTEALSLRRGRKVEILAPQRGEKKQVLDHAVSNARDALSRKLAE 391

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                 +L+       L   P+RIE+YDNSHI G  A G M+V G  GF +  YRKF + 
Sbjct: 392 TAGQAKLLQGVADVLGLDAPPERIEVYDNSHIQGSHAYGVMIVGGPEGFNRKAYRKFKIK 451

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD  MMR VLERRF + +K  E  +           +WPDV+++DGG GQ SA
Sbjct: 452 GPVTPG-DDFGMMREVLERRFGRALKEAEEGDT---------SNWPDVLLIDGGAGQYSA 501

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            + VL  L V   + ++ IAKGP R AG E F+ +  E   L++RDP+LY++QRLRDEAH
Sbjct: 502 VRSVLDDLGVTG-VKLVGIAKGPDRDAGKEWFYTEDKEPFQLDLRDPVLYYLQRLRDEAH 560

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAITTHR  R K    S LD++ GIGP RK+LLL +FG+ + I ++    L +  GIS+
Sbjct: 561 RFAITTHRSGRSKTLVKSELDDVPGIGPARKKLLLNTFGSARAIKQAGLAELEAAHGISR 620

Query: 598 KIACKIYNHFHKN 610
           + A  IY HFH +
Sbjct: 621 ETARAIYGHFHPD 633


>gi|332982397|ref|YP_004463838.1| Excinuclease ABC subunit C [Mahella australiensis 50-1 BON]
 gi|332700075|gb|AEE97016.1| Excinuclease ABC subunit C [Mahella australiensis 50-1 BON]
          Length = 622

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 205/618 (33%), Positives = 336/618 (54%), Gaps = 21/618 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            + +P+ PGVY M D  GR++Y+GKA +L+ R++ Y  S+ NH+ RI  MI+ I +  + 
Sbjct: 12  LKDLPDKPGVYIMRDKDGRIIYIGKAVSLKNRVRQYFRSSTNHSPRIRSMIAHIADFEYI 71

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T +EVEAL+LE ++IK   P++N+ LRDDK +PYI IT     P +   R +      Y
Sbjct: 72  LTDSEVEALVLECSLIKEYHPKYNVSLRDDKHYPYIKITVNEPYPRIMLARSTEPDGARY 131

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           FGP+ +  AV++TI +L+  F +R+C  +   + + RPCL + I +C  PC  +I +E+Y
Sbjct: 132 FGPYPNSAAVKETIETLKGLFPVRTCKRNLNSKKKERPCLDYYIGQCMAPCQKDIPAEQY 191

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + + +   FL G   ++ +K+   M  A    ++E A + RD++ A+  +Q     +  
Sbjct: 192 ADVIRQVCDFLDGRQEDIIDKLKEQMRNAIDALNFEKAAVLRDKINAILSLQEKQKVVST 251

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
                D   ++     + +Q  F   G+  G   F L+       A +L+ F+ QFY+  
Sbjct: 252 ELIDQDVIGVFQQDEDSMVQVFFIRGGRMIGAEHFLLEDTGHDDTASLLASFMEQFYSGI 311

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK- 355
              P  +LL    E+   +E     + G ++++ VP +GEKR+++E A  NA  +  +  
Sbjct: 312 NFIPSEVLLPVWPEDGQTIEKWLSDKKGLRIQLKVPIKGEKRELVEMAEENAREALERFS 371

Query: 356 ---LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
               + +   Q  L+   +   L  +P RIE +D SHI G   V  MVV        + Y
Sbjct: 372 LKIKADKQRTQGALEQLAEILGLDQMPWRIEAFDISHIQGTDTVASMVVAEGGRPKNSDY 431

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF-HPKKQEYSFPSWPDVVILDG 471
           R+F +    +   DD A M  V++RR+S+ +  +  L       ++  F ++PD++++DG
Sbjct: 432 RRFRI---SMPQNDDFASMAEVVDRRYSKGLSEKRQLAAKGLDIKDGKFSAFPDLILIDG 488

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G+GQL+AA+ VL +L ++  I II +AK  +     E +   + E LVL    P L  +Q
Sbjct: 489 GRGQLNAARQVLARLGLD-YIPIIGLAKENE-----EIYIPDRSEPLVLPKDSPALQLLQ 542

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R+RDEAHRFAI+ HR  R K+   S LD I GIG  R++ L++ FG+V+ I R+  E LA
Sbjct: 543 RIRDEAHRFAISYHRSLRGKSALQSVLDNIPGIGDKRRKALMEYFGSVESIKRAGVEELA 602

Query: 591 SIEGISKKIACKIYNHFH 608
           SI+ ++   A K+Y +FH
Sbjct: 603 SIKAMNISAAKKVYEYFH 620


>gi|330875459|gb|EGH09608.1| excinuclease ABC subunit C [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330968112|gb|EGH68372.1| excinuclease ABC subunit C [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 607

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 218/609 (35%), Positives = 333/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGKA NL+KR+ SY     H  +   ++++I  I  T+T  E E
Sbjct: 17  RPGVYRMFDADATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVARIAQIETTITNNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDS-TYPRLSIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++R RPCL +QIKRC GPC G +  + Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSFFKNRNRPCLQYQIKRCKGPCVGLVEPDVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGVDRELPSEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+   L  +  +  G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVNEDFPALIDAIEESRGREMTISHRVRGTRARWQQLAVTNAEQALAARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +       L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFEALAVVLNLDEPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ I G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGIAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|302189905|ref|ZP_07266578.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae 642]
          Length = 607

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/609 (36%), Positives = 335/609 (55%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E E
Sbjct: 17  RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   ++      +  +  G ++ I+   +G + +  + A+ NA ++ T +L+      
Sbjct: 316 IVNVINDDFPAFVDAIEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   K   L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|330980421|gb|EGH78524.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 607

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/609 (36%), Positives = 335/609 (55%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E E
Sbjct: 17  RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   ++      +  +  G ++ I+   +G + +  + A+ NA ++ T +L+      
Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   K   L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|326388848|ref|ZP_08210430.1| excinuclease ABC subunit C [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206448|gb|EGD57283.1| excinuclease ABC subunit C [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 671

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 258/605 (42%), Positives = 355/605 (58%), Gaps = 14/605 (2%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+MLD  G VLYVGKA  L+ R+ +Y   +   +R+  M+S   ++    T +E E
Sbjct: 77  QPGVYRMLDARGDVLYVGKARALKNRVANYTQVDRLPNRLRRMVSLTRSMTIVTTNSEAE 136

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLEA +IKR +P +N+LLRDDKSFP+IL+   H  P + KHR +   +G+Y+GPFAS 
Sbjct: 137 ALLLEAQLIKRYRPAYNVLLRDDKSFPFILLRSDHAFPRIMKHRGARKAKGNYYGPFASA 196

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +V  TIN+LQ+ F LRSC D     R RPCLL+QI+RCS PC G I  E Y E V +A+
Sbjct: 197 GSVNTTINALQKLFLLRSCNDGFMARRDRPCLLYQIRRCSAPCVGRIDEEGYAELVRQAR 256

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245
            FLSG +  ++ +I   M++A    D+E A + RDRL A + IQ             D F
Sbjct: 257 DFLSGKSGAVQREIEAQMSEAAEALDFERAAMLRDRLRAATFIQGSQAINAEGVGNADVF 316

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           ++        IQ  F   GQN G   FF         A++L+ FL QFY D P P  IL+
Sbjct: 317 AVAAKGGHVGIQAFFIRGGQNWGHRAFFPTHTDGLEEAEVLTSFLAQFYEDVPPPRLILV 376

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
                E  LL  +     G KV+I+VP++G++R+++EQA  NA  +  ++L+   +   I
Sbjct: 377 DRLLPEADLLAEALQGGAGGKVEISVPQRGDRRRLMEQAERNAVEALDRRLAETGTKAKI 436

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            ++      L   P RIEIYDNSHI G +AVG MVV G  GF K QYRKFN+   + +  
Sbjct: 437 FREIADFLELGDPPDRIEIYDNSHIQGTNAVGGMVVAGPEGFRKGQYRKFNIKRPETQPG 496

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD AMMR V+ RRFS+    +          E     WPD+V++DGGKGQ++A +  L++
Sbjct: 497 DDFAMMREVMARRFSRAQDED---------PERDKGMWPDLVLIDGGKGQMTAVRETLEE 547

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L +E+ + +I ++KGP R+AG E F    G   +L +  P+L+ +Q+LRDEAHRFAI  H
Sbjct: 548 LGIED-VPLIGVSKGPDRNAGREVFHFPDGREKMLPINSPMLFHLQQLRDEAHRFAIGAH 606

Query: 546 RKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R +A   SPLDEI GIGP RKR LL  FGT   +  +S E L    G+S  +A  IY
Sbjct: 607 RAKRSRAITASPLDEIPGIGPARKRALLLHFGTAGKVRAASLEDLQRAPGVSAAVAQTIY 666

Query: 605 NHFHK 609
           + +H 
Sbjct: 667 DFYHP 671


>gi|28870199|ref|NP_792818.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|32130288|sp|Q880X7|UVRC_PSESM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|28853445|gb|AAO56513.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331015423|gb|EGH95479.1| excinuclease ABC subunit C [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 607

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 219/609 (35%), Positives = 333/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGKA NL+KR+ SY     H  +   ++++I  I  T+T  E E
Sbjct: 17  RPGVYRMFDADATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVARIAQIETTITNNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-TYPRLSIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++R RPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSFFKNRNRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGVDRELPSEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+   L  +  +  G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVNEDFPALIDAIEESRGREMTISHRVRGTRARWQQLAVTNAEQALAARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +       L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFEALAVVLNLDEPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ I G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGIAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|83312899|ref|YP_423163.1| excinuclease ABC subunit C [Magnetospirillum magneticum AMB-1]
 gi|119367664|sp|Q2W0M1|UVRC_MAGMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|82947740|dbj|BAE52604.1| Nuclease subunit of the excinuclease complex [Magnetospirillum
           magneticum AMB-1]
          Length = 624

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 270/610 (44%), Positives = 382/610 (62%), Gaps = 14/610 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+ML   G VLYVGKA +L+KR+ +Y   +    RI  MI++  ++    T 
Sbjct: 24  TLPLSPGVYRMLSGKGDVLYVGKAKSLKKRVVAYTRPDRMPLRIQRMIAETASMEVVTTR 83

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TEVEALLLE+N+IK L PR+NILL+DDK+FP+ILIT  H  P + KHR +   +G YFGP
Sbjct: 84  TEVEALLLESNLIKSLGPRYNILLKDDKTFPHILITADHDWPQVLKHRGARNRKGEYFGP 143

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +T+ +LQR F LRSC+DSVF  RTRPCLLFQIKRCS PC   I  ++Y+  V
Sbjct: 144 FASAGAVNQTLAALQRAFLLRSCSDSVFASRTRPCLLFQIKRCSAPCVERIDRDEYLALV 203

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            EA+ FLSG +  ++  +   M  A    +YE+A + RDR+ AL+ IQ H D        
Sbjct: 204 EEARAFLSGQSRRVQHDLTARMESAAEAMEYEAAAVFRDRIRALTRIQAHQDINPAEVEE 263

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +L+   +  CIQ  FF  G N G   +F          QI++ FL QFY DK  P 
Sbjct: 264 ADVVALHQAGDGVCIQVFFFRSGCNYGNRAYFPVHAQGEEAPQIMAAFLGQFYADKTPPR 323

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILLS E +E +++  +  ++ G KV ++VPK+G++++++E A  NA  +  ++++   +
Sbjct: 324 EILLSLEPDEVAIVAQALSEKAGRKVTLSVPKRGDRKRLVEHAHDNARDALGRRMAESGA 383

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            + +L+   + F +   P+RIE+YDNSHI G  AVG M+V G +G +K+ YRKFN+   D
Sbjct: 384 QRKLLEGVAELFGMESAPERIEVYDNSHIQGSDAVGAMIVAGPDGLMKSAYRKFNIRSTD 443

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD  MMR VL RRF++  K +          +     WPD+ ++DGG+GQL+AA G
Sbjct: 444 LTPGDDFGMMREVLTRRFARAQKED---------PDRDRGLWPDLALIDGGRGQLNAALG 494

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           VL +L +++ + ++ IAKGP R+AG E+FF+   E + L  R P+LYF+QRLRDEAHRFA
Sbjct: 495 VLAELGIDD-VMLVGIAKGPDRNAGRERFFLAGKEPISLESRHPVLYFLQRLRDEAHRFA 553

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I THR RR K    S LD + GIGP RK+ LL  FG+ + ++ +    L S+EGIS  +A
Sbjct: 554 IGTHRARRSKGLVQSTLDALPGIGPKRKKALLHHFGSARAVAEAGLPDLESVEGISHAMA 613

Query: 601 CKIYNHFHKN 610
            KI+++FH  
Sbjct: 614 KKIHDYFHPE 623


>gi|88813713|ref|ZP_01128939.1| excinuclease ABC subunit C [Nitrococcus mobilis Nb-231]
 gi|88789032|gb|EAR20173.1| excinuclease ABC subunit C [Nitrococcus mobilis Nb-231]
          Length = 606

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 236/608 (38%), Positives = 355/608 (58%), Gaps = 21/608 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PGVY+MLD AG+V+YVGKA  L+ R+ SY     H  +   M++Q+++++ T+T 
Sbjct: 15  TLPQRPGVYRMLDGAGKVIYVGKARKLKHRVSSYFTRTMHDAKTRAMLAQVHDVQITLTH 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK L+PR+N+LLRDDKS+PYI ++ +   P L  HR      G YFGP
Sbjct: 75  TEAEALLLENNLIKELRPRYNVLLRDDKSYPYIFLSKQQHFPRLAFHRGPRKPPGRYFGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +T+N L++ F LR C DS F +R+RPCL +QIKRC+ PC G IS E Y   V
Sbjct: 135 FPSAGAVRQTLNHLKKVFPLRQCRDSFFNNRSRPCLQYQIKRCTAPCVGYISEEAYAVDV 194

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRM 242
              + FL G  + + +++ + M  A+   +YE A   RDR++AL  IQ           +
Sbjct: 195 RHVELFLEGHRNQVIDELVQRMEGASEALEYEQAARLRDRISALRRIQERQYVAGARGDV 254

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +   +  L CIQ      G+N G  TFF +    ++ A+ L  F+ + Y  +  P  
Sbjct: 255 DVIACLAHSELICIQVFMIRDGRNLGNQTFFPRIPEGTSEAEALYAFIARHYLGRDIPME 314

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +L+S + E+ +LLE +  +  G++V+I    +GE+R+ +E A  NA  + T +++T    
Sbjct: 315 LLVSHDFEDRALLEEALARDAGHRVRIQWRLRGERRRWLEMAASNARHALTAQIATRAGM 374

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           +   ++      L  +P+RIE +D SH  G + V   VV    G +K+ YR+FN+    +
Sbjct: 375 ERRFEELQLALDLDGMPERIECFDISHTQGEATVASCVVFNRAGPLKSDYRRFNV--AGI 432

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           +  DD A +R  LERR+++L + E                 PD++++DGG+GQL  AQ V
Sbjct: 433 ERGDDYAALRQALERRYTRLKRGE--------------APIPDILLIDGGRGQLKQAQIV 478

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           L++L VE+ + +I IAKGP+R AG E  F+  +   L L    P L+ +Q +RDEAHRFA
Sbjct: 479 LRELQVED-VQLIGIAKGPRRRAGEETLFIAGRPGVLQLAPDSPALHLLQHVRDEAHRFA 537

Query: 542 ITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR RR +K   S L+EI G+GP R++ LL+  G +  + R+  E LA + GIS+ +A
Sbjct: 538 ITGHRVRRGRKRTTSMLEEIPGLGPKRRQSLLKQLGGLHGVRRAGIEDLARVPGISQALA 597

Query: 601 CKIYNHFH 608
            +IY   H
Sbjct: 598 ERIYQTLH 605


>gi|319407079|emb|CBI80716.1| excinuclease ABC subunit C [Bartonella sp. 1-1C]
          Length = 659

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 310/611 (50%), Positives = 423/611 (69%), Gaps = 5/611 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+ML+  G +LY+GKA NL+KR+  Y   + H +RIT MI + N++ F VT
Sbjct: 48  KNLPHKPGVYRMLNENGDILYIGKAQNLKKRVSHYTREHGHNNRITRMIRETNHMEFVVT 107

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDK+ PYI+ITD H+ PALYKHR + T +  YFG
Sbjct: 108 HTETEALLLEANLIKRLQPRFNVLLRDDKTLPYIIITDDHRAPALYKHRGARTRKAHYFG 167

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS +AV +TIN LQR F LR+C DSV  + TRPCLL+QIKRCS PCT EISS  Y++ 
Sbjct: 168 PFASSEAVTQTINVLQRAFLLRTCTDSVLENCTRPCLLYQIKRCSAPCTHEISSSDYLQL 227

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V +AK FLSG + ++K  + + M++A    D+E AI +RDRL+ALSHIQ+H         
Sbjct: 228 VKKAKAFLSGKSQSVKNDMVQAMHKAAENLDFERAITYRDRLSALSHIQSHQSINPQTVK 287

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++   + + CIQ  FF  GQN G  ++F K D   ++++IL+ FL QFY +KP P
Sbjct: 288 EADVFAIAQQEGMTCIQVFFFRMGQNWGNRSYFPKADPSFSSSEILASFLIQFYDNKPIP 347

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLS   +E  LL  +   +  +K+ +++PKQGE++ ++  A  NA+ +  +KLS   
Sbjct: 348 KLILLSNTIDEEILLTEALSLKANHKISLSLPKQGERKALVNHAYTNAYEALQRKLSETS 407

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +H+  L +  K F L H P+RIE+YDNSH+MG +AVG M+VV + GFVKNQYRKFN+   
Sbjct: 408 AHKKFLCNIVKTFQLSHTPRRIEVYDNSHLMGTNAVGVMIVVDQTGFVKNQYRKFNICST 467

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK-KQEYSFPSWPDVVILDGGKGQLSAA 479
           D+K  DD  MM+ V+ERRF +L+K     N +     E S+P WPD++++DGG+GQ++  
Sbjct: 468 DIKPGDDLGMMKEVIERRFLRLLKTYGLPNKNKNIGYEDSYPLWPDLILIDGGQGQINIT 527

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             VL +L +++ IT+I IAKGP R AG+E+FF+K  +   L   DPILYF+QRLRDEAHR
Sbjct: 528 NTVLSELGLDDFITVIGIAKGPDRKAGLERFFMKGKQPFTLPPHDPILYFLQRLRDEAHR 587

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI TH+ +RKK    +PLDEI  IGP RKR LL  FG+ K +SR+S E L  + GISK+
Sbjct: 588 FAIGTHKAKRKKETFKNPLDEIENIGPTRKRALLNYFGSSKAVSRASVEDLTKVTGISKE 647

Query: 599 IACKIYNHFHK 609
           IA KI+N+F+K
Sbjct: 648 IAYKIHNYFNK 658


>gi|90021698|ref|YP_527525.1| excinuclease ABC subunit C [Saccharophagus degradans 2-40]
 gi|119367831|sp|Q21J16|UVRC_SACD2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|89951298|gb|ABD81313.1| Excinuclease ABC subunit C [Saccharophagus degradans 2-40]
          Length = 612

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 232/614 (37%), Positives = 338/614 (55%), Gaps = 23/614 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + + + PGVYQM D  G +LYVGKA NL+ R+ SY  +   T +   ++ +I  I  TV
Sbjct: 16  LKNVTKLPGVYQMYDADGAILYVGKAKNLKNRLSSYFRATGLTPKTHALVKRIQAIEVTV 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N+IK  KP FNILLRDDKSFPYI I++    P L  HR     +G YF
Sbjct: 76  TPSEAEALVLEHNLIKSQKPPFNILLRDDKSFPYIFISEGEPYPKLAFHRGPKKKKGQYF 135

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +  AV++T+N LQRTF +R C DSVFR RTRPCL +QI RC+GPC   IS E Y  
Sbjct: 136 GPFPNASAVKETLNFLQRTFRVRQCEDSVFRSRTRPCLQYQIGRCTGPCVEAISVEDYAV 195

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            +     FL G +  L++++   M QA+   D+E A++ RD++  L  +Q        Y+
Sbjct: 196 DLAHTAMFLDGKSEVLQQELQVEMEQASQALDFERAVVVRDQITDLRQVQAQQVMEAGYS 255

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK--- 297
             D  +      + CI   +   G+  G+ ++  KT  +ST   +LS FL   Y      
Sbjct: 256 NQDVVACASESGVHCIHILYVRQGRIVGSKSYLPKTKLDSTEEDVLSAFLAHHYLGGAAM 315

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P +I++S +  +  ++  +  K  G ++K+T   +  + K +  AL  A ++    L+
Sbjct: 316 DVPPHIIISHKLADQLIIGEAVEKATGKQLKLTHNVRTYRAKWLAMALEAARQNLKNHLN 375

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + +     +       L   P RIE +D SH  G   VG  VV  +NG  K+ YR+FN+
Sbjct: 376 NKQTLVARFESLQDILGLDETPNRIECFDISHSSGELTVGSCVVFDQNGAKKSDYRRFNI 435

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +K  DD A M  VL RR+++L K                 S PD+V++DGGKGQLS
Sbjct: 436 EG--IKAGDDYAAMEQVLTRRYTRLQKE--------------SSSMPDLVLIDGGKGQLS 479

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            A+ V+++L + + + +I +AKG  R  G E   +  G   VL      L+ IQ++RDEA
Sbjct: 480 KAKAVVEELGIHD-MMLIGVAKGTTRKPGFETLVLTSGAERVLKADSAALHLIQQIRDEA 538

Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT H++RR KK   S L+ I G+GP R++ LL  FG ++ + R++ + LA    IS
Sbjct: 539 HRFAITGHKQRRDKKRRTSVLEGIPGVGPKRRKELLVHFGGLQEVLRANVDDLAKAPSIS 598

Query: 597 KKIACKIYNHFHKN 610
           KK+A +IYN  H  
Sbjct: 599 KKMAQEIYNVLHSE 612


>gi|330970024|gb|EGH70090.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 607

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/609 (36%), Positives = 334/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E E
Sbjct: 17  RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   ++      +  +  G ++ I+   +G + +  + A+ NA ++ T +L+      
Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   K   L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V   I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPELI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|66046127|ref|YP_235968.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae
           B728a]
 gi|76803829|sp|Q52377|UVRC_PSEU2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|63256834|gb|AAY37930.1| Excinuclease ABC, C subunit [Pseudomonas syringae pv. syringae
           B728a]
          Length = 607

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/609 (36%), Positives = 334/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E E
Sbjct: 17  RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   ++      +  +  G ++ I+   +G + +  + A+ NA ++ T +L+      
Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   K   L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V   I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPELI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|298486859|ref|ZP_07004915.1| Excinuclease ABC subunit C [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158726|gb|EFH99790.1| Excinuclease ABC subunit C [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 607

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/609 (36%), Positives = 334/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E E
Sbjct: 17  RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGVDRELPSEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   ++   L  +  +  G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVNDDFPALIDAIEELRGREMVISHRVRGTRARWQQMAVTNAEQALAARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
                  K   L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFDALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|104782488|ref|YP_608986.1| excinuclease ABC subunit C [Pseudomonas entomophila L48]
 gi|122402746|sp|Q1I833|UVRC_PSEE4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|95111475|emb|CAK16195.1| excinuclease ABC subunit C [Pseudomonas entomophila L48]
          Length = 607

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 211/609 (34%), Positives = 332/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+KR+ SY        +   ++ +I  +  T+T  E E
Sbjct: 17  RPGVYRMFDAEARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVGRIAQVETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPC G ++ E+Y E V  + 
Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCVGLVTPEEYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G +  L  ++   M +A +  ++E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALNFEKAAELRDQIALLRRVQDQQYMEGGSGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303
            + N   AC+       G+  G+  FF +   E   A++++ FL Q+Y        P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+   +  +     G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVHEDFDAITEAVQTLRGRELSISHRVRGTRARWQQLAVTNAEQALNARLANRQHMA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   +   L  +P+R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 ARFEALAQVLDLDEVPQRLECYDISHSSGEATVASCVVFGPEGPLKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L+RR+ ++   E  L              PDV+++DGGKGQL+ A+ V+
Sbjct: 434 AGDDYAAMHQALQRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVM 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
           ++L     +T++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 QELGF-GDLTLLGVAKGVTRKAGFETLYLNDVAHEFTLKGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR KA   S L+++ G+GP R+R LL+ FG ++ ++R+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKARRTSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY   H  
Sbjct: 599 SIYASLHSE 607


>gi|259418135|ref|ZP_05742054.1| excinuclease ABC, C subunit [Silicibacter sp. TrichCH4B]
 gi|259347041|gb|EEW58855.1| excinuclease ABC, C subunit [Silicibacter sp. TrichCH4B]
          Length = 630

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 260/610 (42%), Positives = 378/610 (61%), Gaps = 15/610 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     HT RI  MISQ   + F  
Sbjct: 30  LKTLDSSPGVYRMLDHESRVLYVGKARNLRARVSNYTRP-GHTPRIEKMISQTTRMMFLT 88

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+   H  P L KHR +   +GSYF
Sbjct: 89  TRTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVGKNHAYPQLKKHRGARKEKGSYF 148

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQ+ F LR+C+D++F +RTRPCL +QIKRCSGPC G IS + Y +
Sbjct: 149 GPFASASAVNRTLNQLQKAFLLRNCSDTMFENRTRPCLQYQIKRCSGPCVGLISHDDYSD 208

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V +A++FL+G +  ++E++   M  A+   +YE A   RDR+ AL+ +Q+         
Sbjct: 209 SVRDAERFLAGRSTKIQEELGAQMMAASEAMEYERAAALRDRIKALTQVQSAQGINPRGV 268

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D   L+    LAC+Q  F    QN G   F+ +   + + A+++  F+ QFY +K  
Sbjct: 269 AEADIIGLHLENGLACVQVFFIRANQNWGNQDFYPRVADDMSAAEVMEAFIGQFYDNKDV 328

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++LS++ E   L+  +   + G KV+I +P++GEK +++  A+ NA  S  ++++  
Sbjct: 329 PRQLILSDDIENADLMAAALGDKAGRKVEILIPQRGEKTELVASAVRNARESLARRMAES 388

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L+     F L   P RIE+YDNSHI G +AVG M+V+G  GF+KN YRKFN+  
Sbjct: 389 ATQAKLLRGIADAFGLEGPPNRIEVYDNSHIQGTNAVGGMIVMGPEGFMKNAYRKFNIRD 448

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            +    DD  MM+ VL RRFS+L+K +          +     WPD++++DGG GQ+SA 
Sbjct: 449 GETIAGDDFGMMKAVLNRRFSRLLKED---------PDRQKGMWPDLLLIDGGAGQVSAV 499

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++++  V++ I +I +AKG  R  G E+F+     A  L   DP+LYFIQR+RDEAHR
Sbjct: 500 AEIMEEHGVQD-IPMIGVAKGVDRDHGKEEFYRPGENAFALQRNDPVLYFIQRMRDEAHR 558

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R K+   +PLD I G+G  RK+ LL  FG+ K +SR++   L +++G+S  
Sbjct: 559 FAIGTHRAKRAKSLVANPLDGIPGVGARRKKALLTHFGSAKAVSRANLSDLKAVDGVSDA 618

Query: 599 IACKIYNHFH 608
           +A  IYN+F 
Sbjct: 619 LAETIYNYFQ 628


>gi|320324326|gb|EFW80405.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320328551|gb|EFW84553.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 607

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/609 (36%), Positives = 334/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E E
Sbjct: 17  RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++   M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNATMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   ++      +  +  G ++ I+   +G + +  + A+ NA ++ T +L+      
Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   K   L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|71733411|ref|YP_274534.1| excinuclease ABC subunit C [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|92058693|sp|Q48J96|UVRC_PSE14 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|71553964|gb|AAZ33175.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 607

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/609 (36%), Positives = 334/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E E
Sbjct: 17  RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++   M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNATMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGATGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   ++      +  +  G ++ I+   +G + +  + A+ NA ++ T +L+      
Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   K   L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|289650302|ref|ZP_06481645.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330867008|gb|EGH01717.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330890124|gb|EGH22785.1| excinuclease ABC subunit C [Pseudomonas syringae pv. mori str.
           301020]
          Length = 607

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/609 (36%), Positives = 335/609 (55%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E E
Sbjct: 17  RPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   ++      +  +  G ++ I+   +G + +  + A+ NA ++ T +L+      
Sbjct: 316 IVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   K   L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|213970620|ref|ZP_03398746.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. tomato T1]
 gi|301386327|ref|ZP_07234745.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato Max13]
 gi|302060908|ref|ZP_07252449.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato K40]
 gi|302133961|ref|ZP_07259951.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213924617|gb|EEB58186.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. tomato T1]
          Length = 607

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 218/609 (35%), Positives = 332/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGKA NL+KR+ SY     H  +   ++++I  I  T+T  E E
Sbjct: 17  RPGVYRMFDADATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVARIAQIETTITNNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-TYPRLSIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++R RPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSFFKNRNRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++  +M +A +   +E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALHFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGVDRELPSEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+   L  +  +  G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVNEDFPALIDAIEESRGREMTISHRVRGTRARWQQLAVTNAEQALAARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +       L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFEALAVVLNLDEPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ I G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGIAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|224826429|ref|ZP_03699531.1| excinuclease ABC, C subunit [Lutiella nitroferrum 2002]
 gi|224601530|gb|EEG07711.1| excinuclease ABC, C subunit [Lutiella nitroferrum 2002]
          Length = 601

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 229/609 (37%), Positives = 328/609 (53%), Gaps = 27/609 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+MLD AG+VLYVGKA +L+KR+ SY   N+ + RI  M+ QI  I  TVT 
Sbjct: 15  HLPNLPGVYRMLDAAGKVLYVGKAIDLKKRVSSYFQKNDLSPRIQLMVRQIAAIETTVTR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+IK L PR+NIL RDDKS+PY++++  H  P L   R        YFGP
Sbjct: 75  SEAEALILENNLIKALAPRYNILFRDDKSYPYLMLS-AHAYPQLAYFRGDPKKPHQYFGP 133

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  AV ++I  LQ+ F LR+C D+VF +R+RPCLL+QIKRCSGPC   I    Y   V
Sbjct: 134 YPNSYAVRESIQILQKVFRLRTCEDAVFANRSRPCLLYQIKRCSGPCVEHIDEAAYRADV 193

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
             A  FL G  + L + +   M  A+   ++E A   RD++ ALS +Q          + 
Sbjct: 194 ANAVAFLQGKQNELIDSLTERMLAASEAMEFEQAAALRDQIQALSRVQEKQFVSSNVSHD 253

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  ++   + + C+       G++ G  +FF      S  +  L  FL Q Y   P P 
Sbjct: 254 ADVVAVAEQQGVVCVNLVMVRGGRHLGDKSFFPLNSEGSDASANLEAFLAQHYLGAPLPP 313

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I+++     T  L     +Q   ++ I     GE+R  +E A  NA  +  QKL++  +
Sbjct: 314 VIIVNGAISPT--LRDYLEQQAERRLAIVGNPIGERRVWLEMAEKNAQLAIQQKLASHAT 371

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L    +   L  +  R+E +D SH +G + V   VV        ++YR++N+    
Sbjct: 372 QSQRLARLNEVLELEGVE-RLECFDISHTLGEATVASCVVYDRGDMQPSEYRRYNITTA- 429

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
            K  DD   MR VL RR+S+L + E  L              PDVV++DGGKGQ+  A  
Sbjct: 430 -KAGDDYGAMREVLTRRYSKLAEGEGKL--------------PDVVLIDGGKGQVGVALE 474

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHRF 540
           V   + +   + I+ +AKG +R  G+E      + + L L    P L+ IQ +RDEAHRF
Sbjct: 475 VFADIGL--NLPIVGVAKGEERKPGLETLILPYREKTLQLPHDHPALHLIQTVRDEAHRF 532

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR RR KA   S L+EING+G  R++ LL  FG ++ +  +S + LA +EGIS+ +
Sbjct: 533 AITGHRARRGKARTASSLEEINGVGAKRRQRLLTRFGGLRGVMAASIDDLAQVEGISQTL 592

Query: 600 ACKIYNHFH 608
           A KIYN  H
Sbjct: 593 AEKIYNALH 601


>gi|114798753|ref|YP_761643.1| excinuclease ABC subunit C [Hyphomonas neptunium ATCC 15444]
 gi|119367659|sp|Q0BY00|UVRC_HYPNA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|114738927|gb|ABI77052.1| excinuclease ABC, C subunit [Hyphomonas neptunium ATCC 15444]
          Length = 614

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 262/612 (42%), Positives = 384/612 (62%), Gaps = 14/612 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + + +P  PGVY+M   AG VLYVGKA +L+ R+ +Y     HT RI  MIS    + F 
Sbjct: 10  NLKHLPSRPGVYRMFGEAGEVLYVGKARDLKARVSNYTRMGGHTQRIARMISLTRAMEFV 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE EALLLEA+++K LKPRFN+LLRDDKSFPYILI   H+ P + K+R S   +G Y
Sbjct: 70  VTETETEALLLEASLVKSLKPRFNVLLRDDKSFPYILIRRNHEAPQIKKYRGSKQDEGDY 129

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFA+  AV +T+++LQ+ F LR+C DSV+  RTRPC+L QIKRC+ PC G +S E Y 
Sbjct: 130 FGPFANAGAVMRTLDTLQKAFLLRTCEDSVYSARTRPCMLHQIKRCAAPCVGLVSKEDYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
               EA  FL G    L++++A  M  A+   ++E+A   RDR+ A++H+++  D   + 
Sbjct: 190 ALADEAADFLRGKAGELQKRLASEMEAASEAMEFETAARLRDRIRAIAHVRSTQDVNPDG 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F++  +  ++C+Q  F   GQN G    F + + + T  +IL+ FL QFY  +P
Sbjct: 250 IEEADVFAIAMDGGVSCVQVFFIRAGQNWGASAHFPRHEKDQTAPEILAAFLVQFYDKRP 309

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ IL+SE  ++  L+E +   + G ++++  P++G KR ++ QA  NA  + ++KL+ 
Sbjct: 310 PPKLILVSEPPDQADLIEEALALKAGRRIELRRPERGTKRDLLTQAERNASEALSRKLAE 369

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             S + +L +  K F L   P+RIE+YDNSHI G +AVG M+V G  GF K  YRKFN+ 
Sbjct: 370 SASQERLLTEVQKVFDLAEAPQRIEVYDNSHIQGTNAVGGMIVAGPEGFRKQAYRKFNIK 429

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             ++   DD  MMR V+ RRF++ +K +            +   WPD+V++DGG GQL+A
Sbjct: 430 DTEITPGDDYGMMREVMRRRFARAMKEK---------VAGNVSDWPDLVLIDGGLGQLNA 480

Query: 479 AQGVLKKLNV-ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
               L +L +  + +T++SIAKG  R+AG E+FF        L    P+LY++QRLRDEA
Sbjct: 481 TLETLAELGLTPDDVTLVSIAKGVDRNAGREQFFRPGKAPFKLPENAPVLYYLQRLRDEA 540

Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HR+AI  HR++R  +AA SPLDEI GIGP RK+ LL  FG+ + +SR+    L  ++G++
Sbjct: 541 HRWAIGAHRQKRAAEAARSPLDEIEGIGPTRKKALLHHFGSARGVSRAKVADLMEVDGVN 600

Query: 597 KKIACKIYNHFH 608
           + +A +IY HF+
Sbjct: 601 EALAIRIYGHFN 612


>gi|288958390|ref|YP_003448731.1| excinuclease ABC subunit C [Azospirillum sp. B510]
 gi|288910698|dbj|BAI72187.1| excinuclease ABC subunit C [Azospirillum sp. B510]
          Length = 659

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/613 (44%), Positives = 383/613 (62%), Gaps = 16/613 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+ML   G VLYVGKA NL++R+ +Y        R+  M+++   + F  
Sbjct: 57  LKTLPQTPGVYRMLAGDGAVLYVGKARNLKRRVTNYTQVGKLPVRLQRMVAETETMEFVN 116

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TEVEALLLE+N+IK+L PR+N+LLRDDK+FP+I+IT  H  P L KHR +      YF
Sbjct: 117 THTEVEALLLESNLIKKLMPRYNVLLRDDKTFPHIMITRDHDYPQLTKHRGARGRDADYF 176

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +TI +LQR F LR+CAD+VF  RTRPCL +QIKRC+ PC   +S  +Y  
Sbjct: 177 GPFASAGAVNRTITALQRAFLLRNCADTVFASRTRPCLQYQIKRCTAPCVERVSPAEYRA 236

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---- 238
            V +A+ FLSG + +++ + A  M  A+   D+E+A  +RDR+ AL+ IQ H D      
Sbjct: 237 QVDQARAFLSGKSRDIQTEFAERMMAASDAMDFETAARYRDRIRALTAIQAHQDINVEGV 296

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  + Y      C+Q  FF  G+N G   +F   D  +   ++L+ F+ QFY +K 
Sbjct: 297 VEDADVIAAYAEGGTTCVQVFFFRGGRNYGNRAYFPSHDKVAETEEVLAAFIAQFYENKA 356

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  +L+S    E  LL  +   + G+KV++  PK+GEKR+++E ALINA  +H ++L+ 
Sbjct: 357 APPLVLVSHALPELELLTEALAIRAGHKVELAEPKRGEKRRLVEHALINAREAHGRRLAE 416

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             S   +L+     F +   P+R+E+YDNSHI G  A+G M+V G +GF+KN YRKFN+ 
Sbjct: 417 SSSQARLLEGVAAAFGMDSAPERVEVYDNSHIQGAHAIGAMIVAGPDGFIKNAYRKFNIR 476

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD AMMR VL RRF + +K +          E S  SWPD+V++DGG GQL+ 
Sbjct: 477 SEGAAG-DDFAMMREVLTRRFGRAVKED---------PERSLGSWPDLVLIDGGIGQLNV 526

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  V  +L +++ +T++ IAKGP R AG E F ++      +  RDP+LYF+QRLRDEAH
Sbjct: 527 ALEVFAELGIDD-VTLVGIAKGPDRDAGREHFLMENRPPFQMEPRDPVLYFLQRLRDEAH 585

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI THR +R KA   SP+DEI GIGP RK+ LL  FG+   +SR+    L ++EGI++
Sbjct: 586 RFAIGTHRAKRTKAIGKSPIDEIAGIGPARKKALLHHFGSGAAVSRAGLADLEAVEGINR 645

Query: 598 KIACKIYNHFHKN 610
            +A KIY+HFH +
Sbjct: 646 AVAKKIYDHFHPD 658


>gi|330503310|ref|YP_004380179.1| excinuclease ABC subunit C [Pseudomonas mendocina NK-01]
 gi|328917596|gb|AEB58427.1| excinuclease ABC subunit C [Pseudomonas mendocina NK-01]
          Length = 607

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 221/609 (36%), Positives = 336/609 (55%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D  GR+LYVGKA NL+KR+ SY        +   ++++I  I  T+T  E E
Sbjct: 17  RPGVYRMFDGEGRLLYVGKAKNLKKRLSSYFRKTGQAPKTAALVARIAQIETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS +++RTRPCL +QIKRC GPC G +S E+Y E V  + 
Sbjct: 136 LAIRESLSLLQKTFLVRQCEDSYYKNRTRPCLQYQIKRCKGPCVGLVSPEEYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLY 248
            FL G ++ L E+++ +M +A++  ++E A   RD++A L  +Q+         D   + 
Sbjct: 196 MFLDGRSNALSEELSASMEKASMALEFERAAELRDQIAMLRRVQDQQSMEGGTGDVDVVA 255

Query: 249 HN--KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303
                  AC+       G+  G+  FF +   E     +L  FL Q+Y        P  +
Sbjct: 256 VMLTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEGGDVLMAFLAQYYLGNAERDLPSEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++ + E+   L  +     G  + I++  +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVQHEDFPTLIEAIESLRGRSISISLRVRGTRARWQQLAVTNAEQALAARLANRQHLA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +       +   P+R+E +D SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 ERFEALATVLEMDEPPQRMECFDISHSSGEATVASCVVFGPEGPLKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RRFS++   E  L              PDV+++DGGKGQL+ A+ VL
Sbjct: 434 AGDDYAAMHQALTRRFSKIKDGEGKL--------------PDVLLVDGGKGQLAMAREVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAI 542
           ++L V + I ++ +AKG  R  G+E  ++   E    L    P L+ IQ++RDE+HRFAI
Sbjct: 480 QELAVPDLI-LLGVAKGTTRKPGLEVLYLNDAEHEFTLPGNSPALHLIQQIRDESHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR KA   S L+E+ GIGP R+R LL  FG ++ +SR+S E +A   GISKK+A 
Sbjct: 539 TGHRARRGKARRTSTLEEVAGIGPKRRRELLNHFGGLQELSRASAEEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY+  H  
Sbjct: 599 LIYDTLHSE 607


>gi|330988831|gb|EGH86934.1| excinuclease ABC subunit C [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331008144|gb|EGH88201.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 607

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/609 (36%), Positives = 336/609 (55%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   ++LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E E
Sbjct: 17  RPGVYRMFDAEAKLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGTKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   ++      +  +  G ++ I+   +G + +  + A+ NA ++ T +L+      
Sbjct: 316 IVNVINDDFPAFVDAVEELRGVELVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   K   L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 SRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|94496331|ref|ZP_01302908.1| excinuclease ABC, C subunit [Sphingomonas sp. SKA58]
 gi|94424077|gb|EAT09101.1| excinuclease ABC, C subunit [Sphingomonas sp. SKA58]
          Length = 637

 Score =  558 bits (1438), Expect = e-157,   Method: Composition-based stats.
 Identities = 262/611 (42%), Positives = 370/611 (60%), Gaps = 16/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M D  G VLYVGKA  L+ R+ +Y   +    R+  M++Q  ++    
Sbjct: 37  LKTLPIRPGVYRMHDARGDVLYVGKARALKNRVANYTQVDRLPKRLQRMVAQTRSMTIVT 96

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLEA +IKR +P +N+LLRDDKSFP+IL+ D H  P + KHR +   QG Y+
Sbjct: 97  TNSEAEALLLEAQLIKRYRPPYNVLLRDDKSFPFILLRDDHAFPRVQKHRGARKYQGRYY 156

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  +V +TIN+LQ+ F LRSC DS F +R+RPCLL+QIKRCS PC   I    Y E
Sbjct: 157 GPFASAGSVTRTINALQKLFLLRSCTDSFFANRSRPCLLYQIKRCSAPCVDRIDEAGYAE 216

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            V +A+ FL G +  +++K+   M QA+   D+E A + RDRL AL+ IQ          
Sbjct: 217 LVRDAQDFLGGKSTAVQKKLGAAMQQASDAMDFEQAAVIRDRLKALTFIQGSQAINAEGL 276

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D F+L       CIQ  F   GQN G  +FF    ++    ++L  F+ QFY + P 
Sbjct: 277 GDADIFALAEKGGAMCIQAFFIRGGQNWGHRSFFPVHTADVATEEVLESFMAQFYEEVPP 336

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  IL   +  E  L+ ++  ++ G KV+I VP++GE+ ++I+QA  NA  +  ++L+  
Sbjct: 337 PRLILADRQPAECELMALALSERAGGKVRIEVPQRGERTRLIKQAQRNAVEALDRRLAET 396

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            S   IL +  + F L  +P RIEIYDNSHI G  A+G MVV G  GF KN YRKFN+  
Sbjct: 397 TSQGRILDEMVETFGLEGVPDRIEIYDNSHIQGAHALGAMVVAGPEGFRKNAYRKFNMKN 456

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            ++ + DD AMMR + ERRF +  + +          +     WPD+V++DGGKGQLSAA
Sbjct: 457 PEI-SNDDFAMMREMFERRFGRAARED---------PDRDSGEWPDLVLIDGGKGQLSAA 506

Query: 480 QGVLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           +G+L+ L +E+ + +I +AKGP     G E F +  G  +   +  P+L+++QRLRDEAH
Sbjct: 507 RGILEDLGIED-VCMIGVAKGPHHGREGREVFHLMDGREITFPLNHPVLFYLQRLRDEAH 565

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HR +R KA   S LDE+ GIGP RK+ LL  FGT + +  ++ E LA   G+SK
Sbjct: 566 RFAIGAHRAKRSKAITVSSLDEVPGIGPARKKALLMHFGTARAVRDAALEDLAKAPGVSK 625

Query: 598 KIACKIYNHFH 608
            +A ++Y+ FH
Sbjct: 626 AVAQQVYDFFH 636


>gi|163738849|ref|ZP_02146262.1| excinuclease ABC subunit C [Phaeobacter gallaeciensis BS107]
 gi|161387654|gb|EDQ12010.1| excinuclease ABC subunit C [Phaeobacter gallaeciensis BS107]
          Length = 629

 Score =  558 bits (1438), Expect = e-157,   Method: Composition-based stats.
 Identities = 261/610 (42%), Positives = 381/610 (62%), Gaps = 15/610 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     H+ RI  MI+   ++ F  
Sbjct: 28  LKTLDSSPGVYRMLDSESRVLYVGKARNLRARVSNY-SRPGHSPRIERMIAATASMMFLT 86

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+   H  P + KHR +   +GSYF
Sbjct: 87  TRTETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVAKDHAFPQIKKHRGTRREKGSYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQ+ F LR+C +++F  RTRPCL +QIKRC+ PCTGEIS+E Y  
Sbjct: 147 GPFASAGAVNRTLNQLQKAFLLRNCTNAMFESRTRPCLQYQIKRCTAPCTGEISAEDYAS 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V +A++FLSG +  ++E++A  M  A+   ++E A   RDR+ AL+ +Q          
Sbjct: 207 SVRDAERFLSGRSTKIQEELAEQMAAASEAMEFERAAALRDRIKALTQVQTSQGINPRGV 266

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D   L+ +   AC+Q  F    QN G   F+ + + + + A+++  F+ QFY +K  
Sbjct: 267 AEADVIGLHLDSGQACVQVFFIRANQNWGNQDFYPRINGDVSPAEVMEAFIGQFYDNKEP 326

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++LS+E E   L+E +   + G +V+I VP++GEK +++  A+ NA  S  ++++  
Sbjct: 327 PRQLILSDEIENGDLMEQALSDKAGRRVEILVPQRGEKTELVAGAVRNARESLARRMAES 386

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +L+   + F L   P+RIE+YDNSHI G  AVG M+V G  GF+KN YRKFN+  
Sbjct: 387 ATQAKLLRGVAEAFGLEGPPQRIEVYDNSHIQGSHAVGGMIVAGPEGFMKNAYRKFNIRG 446

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +D+   DD  MM+ VL RRFS+L+K +          +     WPD++++DGG GQ+SA 
Sbjct: 447 DDLTPGDDFGMMKEVLNRRFSRLLKED---------PDREKGLWPDLLLIDGGAGQVSAV 497

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++ +  V++ I +I +AKG  R  G E+F      A  L   DP+LYF+QR+RDEAHR
Sbjct: 498 AEIMAEHGVQD-IPMIGVAKGVDRDHGKEEFHRLGAPAFALQRNDPVLYFVQRMRDEAHR 556

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   +PLDE+ G+G  RKR LL  FG+ K +SR++   L ++EG+S  
Sbjct: 557 FAIGTHRAKRAKAMGATPLDEVPGVGAARKRALLAHFGSAKAVSRANLSDLKAVEGVSAA 616

Query: 599 IACKIYNHFH 608
           +A +IY+ FH
Sbjct: 617 LAQRIYDFFH 626


>gi|291613959|ref|YP_003524116.1| excinuclease ABC, C subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584071|gb|ADE11729.1| excinuclease ABC, C subunit [Sideroxydans lithotrophicus ES-1]
          Length = 602

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 236/609 (38%), Positives = 335/609 (55%), Gaps = 25/609 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+MLD AG+VLYVGKA  L+KR+ SY   +N + RI  M+S I  I  TVT 
Sbjct: 14  SLPLQPGVYRMLDEAGQVLYVGKANQLKKRVGSYFQQSNLSPRIRLMVSHIARIEVTVTR 73

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK LKPR+NIL RDDKS+PYI++T     P L  +R ++  +  YFGP
Sbjct: 74  SEAEALLLENNLIKSLKPRYNILFRDDKSYPYIVLTGS-PSPRLTYYRGATDKRNQYFGP 132

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  A +++IN LQ+ F LR+C + VF +RTRPCLL QI RCS PC G IS+E Y   V
Sbjct: 133 YPNAQAAKESINLLQKVFRLRTCEEGVFNNRTRPCLLHQIHRCSAPCVGLISAEDYATDV 192

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A   L G    +++++   M QA     YE A   RD+L AL  +Q        R   
Sbjct: 193 RNAGLLLQGKFDEVEKRLREAMEQAAEAMHYEHAAALRDQLQALHTVQQKQFVESGRDTD 252

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  ++   +   C+       G++ G   FF +      +A++L  FL Q Y +   P 
Sbjct: 253 ADIVAVVEAEGAICLNLAVVRGGRHLGDKPFFPQNVQGQDSAEVLEAFLAQHYLESNVPS 312

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I+ S E  + +L E    +Q G+KV+I     GE+R+ +E A  NA  +  Q+   +  
Sbjct: 313 LIITSAEISDETL-EALLSEQAGHKVQIRHAVTGERRQWLEMAQGNALLALRQQAGLQAG 371

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
             + L+      +LP +  RIE +D SH MG + V   VV  +      +YR++N+    
Sbjct: 372 QALRLEALRTALSLPDLK-RIECFDISHTMGEATVASCVVYDDLAIRPQEYRRYNI--GG 428

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A MR  L+RR+ +L   E                 PD++++DGG GQL  A  
Sbjct: 429 ITPGDDYAAMRQALQRRYQKLQAGE--------------GKRPDLILIDGGAGQLGMAVE 474

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRF 540
           V+ +  + + I +I +AKG +R  G E+      E  L L    P L+ IQ++RDEAHRF
Sbjct: 475 VMAEFGLSD-IALIGVAKGVERKPGKEQLLRPGAEKPLQLTPDSPALHLIQQVRDEAHRF 533

Query: 541 AITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI+ HR RR KA   S L++I G+G  R+R LL  FG +K + ++S E LA +EGIS  +
Sbjct: 534 AISGHRARRGKARTTSSLEDIEGVGEKRRRNLLTHFGGLKGVQQASIEELARVEGISPLL 593

Query: 600 ACKIYNHFH 608
           A KIY H H
Sbjct: 594 AEKIYQHLH 602


>gi|329895078|ref|ZP_08270823.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC3088]
 gi|328922523|gb|EGG29861.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC3088]
          Length = 606

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 222/612 (36%), Positives = 338/612 (55%), Gaps = 23/612 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +Q+ + PGVYQML   G +LYVGKA NL+ R+ SY  ++  T +   ++++I +I+ TV
Sbjct: 8   LKQLTQRPGVYQMLGSEGEILYVGKAKNLKARVSSYFRASGLTTKTMALVAKIVDIQVTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TEV+ALLLE N+IK  KP +NILL+DDKS+PYI ++ +   P L  HR S   +G YF
Sbjct: 68  TSTEVDALLLEHNLIKEHKPPYNILLKDDKSYPYIFLSTQDTFPRLAFHRGSKRKKGQYF 127

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181
           GP+ S  AV ++++ LQ+TF +R C D+ FR+R+RPCL  QI RC+GPC    ++ E+Y 
Sbjct: 128 GPYPSSGAVRESLHFLQKTFRVRQCEDAYFRNRSRPCLQHQIGRCTGPCVPGFVTEEEYA 187

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           E V   + FL G +  L  K+A +M     + ++E A + RD+L  +  +Q+        
Sbjct: 188 EQVESTRLFLQGKSQELMAKLADDMEACAERLEFEKAAVLRDQLGHIQQVQSSQGIEGVR 247

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDK 297
             +D  +       AC+   F   G+  G+ +++     + T A  LS F+ Q+Y   ++
Sbjct: 248 GDLDIIACATRHGKACVHVLFVREGRVIGSRSYYPALAIDDTEASTLSAFVLQYYLANER 307

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
           P P+ +++S E +E   L     ++   KV +    +  + + ++ A+  A  +    L 
Sbjct: 308 PVPQEVIVSHELDEVQALNELLTQRAKVKVSVKHRVREARARWLQLAVQTADTNLMAHLE 367

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + + +  L    K   L   P+RIE +D SH  G   V   VV G +G  K+ YRKFN+
Sbjct: 368 AKETTRARLLALQKAAQLGAFPERIECFDISHSSGAQTVASCVVFGVDGAKKSDYRKFNI 427

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M+  LERRF +L   E                 PDV+++DGGKGQ+S
Sbjct: 428 EG--ITGGDDYAAMQQALERRFKRLKNGE--------------GVKPDVLLIDGGKGQVS 471

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDE 536
            A GVL+ L +E+ I +I +AKG  R AG E       G+   L   DP L+ IQ +RDE
Sbjct: 472 QAMGVLEALQIED-IVVIGVAKGTTRKAGFETLINGATGKEWQLQSDDPALHLIQYIRDE 530

Query: 537 AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           +HRFAIT HR RR K   S L+ I G+G  R+R LL+ FG+ + +  ++ E L  + GI+
Sbjct: 531 SHRFAITGHRARRAKQHQSALESIPGVGAKRRRDLLRHFGSAQGVKGANIEELIKVPGIN 590

Query: 597 KKIACKIYNHFH 608
           + +A +I  H  
Sbjct: 591 RALAEQIVEHLQ 602


>gi|146307397|ref|YP_001187862.1| excinuclease ABC subunit C [Pseudomonas mendocina ymp]
 gi|189038075|sp|A4XUW4|UVRC_PSEMY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|145575598|gb|ABP85130.1| Excinuclease ABC subunit C [Pseudomonas mendocina ymp]
          Length = 607

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 220/609 (36%), Positives = 336/609 (55%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+KR+ SY        +   ++++I  +  T+T  E E
Sbjct: 17  RPGVYRMFDADARLLYVGKAKNLKKRLSSYFRKTGQAPKTAALVARIAQVETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS +R+RTRPCL +QIKRC GPC G +S E+Y E V  + 
Sbjct: 136 LAIRESLSLLQKTFLVRQCEDSYYRNRTRPCLQYQIKRCKGPCVGLVSPEEYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLY 248
            FL G ++ L E+++ +M +A++  ++E A   RD+++ L  +Q+         D   + 
Sbjct: 196 MFLEGRSNALSEELSASMEKASMALEFERAAELRDQISMLRRVQDQQSMEGGSGDVDVVA 255

Query: 249 HN--KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303
                  AC+       G+  G+  FF +   E    ++L  FL Q+Y        P  +
Sbjct: 256 VMLNPGGACVHLISVRGGRVLGSKNFFPQVAIEEEGGEVLMAFLAQYYLGNAERDLPSEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++ + E+ S L  +     G  + I++  +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVQHEDFSTLIEAVESLRGRSLSISLRVRGTRARWQQLAVTNAEQALAARLANRQHLA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +       +   P+R+E +D SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 ERFEALATVLEMDEPPQRMECFDISHSSGEATVASCVVFGPEGPLKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RRFS++   E  L              PDV+++DGGKGQL+ A+ VL
Sbjct: 434 PGDDYAAMHQALTRRFSKIKDGEGKL--------------PDVLLVDGGKGQLAMAREVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAI 542
           ++L V + I ++ +AKG  R  G+E  ++   E    L    P L+ IQ++RDE+HRFAI
Sbjct: 480 QELAVPDLI-LLGVAKGTTRKPGLEVLYLNDAEHEFTLPGNSPALHLIQQIRDESHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR KA   S L+E+ GIGP R+R LL  FG ++ +SR+S E +A   GISKK+A 
Sbjct: 539 TGHRARRGKARRTSTLEEVAGIGPKRRRELLNHFGGLQELSRASAEEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY   H  
Sbjct: 599 LIYATLHSE 607


>gi|85716039|ref|ZP_01047016.1| excinuclease ABC subunit C [Nitrobacter sp. Nb-311A]
 gi|85697237|gb|EAQ35118.1| excinuclease ABC subunit C [Nitrobacter sp. Nb-311A]
          Length = 693

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 291/607 (47%), Positives = 383/607 (63%), Gaps = 6/607 (0%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+M++ A  VLYVGKA N++KR+ SY        RI  MI+    +    T TE
Sbjct: 84  PTSPGVYRMMNAACDVLYVGKAKNVRKRLSSYARPTGQVMRIARMIAATAAVEIVSTETE 143

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT  H  P + KHR + +  G YFGPFA
Sbjct: 144 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQILKHRGAQSRPGRYFGPFA 203

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  AV +TI +LQR F +RSC DS F  RTRPCLL+QIKRC+GPCTGEI    Y   V E
Sbjct: 204 SAGAVGRTITALQRAFLVRSCTDSFFESRTRPCLLYQIKRCAGPCTGEIDFPGYTALVRE 263

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A  FLSG +  +KE +AR M +A+    +E A ++RDRLAALS IQ+            D
Sbjct: 264 ATDFLSGRSRAVKEDLARAMERASADLAFERAALYRDRLAALSAIQSQQGINPRTVEEAD 323

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F+++      C++  FF  GQN G   +F + +   T  ++L  FL QFY DKP P  I
Sbjct: 324 VFAIHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLGSFLAQFYDDKPPPGLI 383

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           LLS   EE  LL  +   + G++VK+ VP++GEK++++  AL NA  +  +KL+   +  
Sbjct: 384 LLSHPIEEGELLADALSIKAGHRVKVLVPQRGEKKELVAHALTNAREALGRKLAETATQS 443

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
            +L+       LP  P+RIE+YDNSHI G +AVG M+V G  GF+KNQYRKFN+    + 
Sbjct: 444 RLLQGLAAVLGLPRTPRRIEVYDNSHIQGANAVGAMIVAGPEGFLKNQYRKFNIKSESLT 503

Query: 424 TQDDCAMMRMVLERRFSQLIKNE-ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
             DD AMMR VLERRF +L+  +  +     + ++ S P WPD+VI+DGG GQL+AA GV
Sbjct: 504 PGDDYAMMREVLERRFKRLLAQKSADPYPVAESEKDSVPQWPDLVIIDGGLGQLNAACGV 563

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L +  +++++++AKGP R AG E  F+     + L  RDPILYFIQRLRDEAHRF I
Sbjct: 564 LDALGLS-QVSLMAVAKGPDRDAGRETLFLPDRPGIKLEPRDPILYFIQRLRDEAHRFVI 622

Query: 543 TTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
            +HRK R K      L E+ GIGP RKR LL  FGT+K I R+S   L  + GIS + A 
Sbjct: 623 GSHRKLRSKDIREAGLQEVPGIGPARKRALLHHFGTIKEIERASVADLGKVPGISAESAR 682

Query: 602 KIYNHFH 608
           +I++ FH
Sbjct: 683 RIFDFFH 689


>gi|302391083|ref|YP_003826903.1| excinuclease ABC subunit C [Acetohalobium arabaticum DSM 5501]
 gi|302203160|gb|ADL11838.1| Excinuclease ABC subunit C [Acetohalobium arabaticum DSM 5501]
          Length = 607

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 208/622 (33%), Positives = 336/622 (54%), Gaps = 34/622 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+  GVY M + AG V+YVGKA +L+KR++SY   + NH+ +   ++ +I +I +
Sbjct: 6   QLDNLPDASGVYLMKNKAGEVIYVGKAKSLRKRVRSYFQKSRNHSFKTEALVKRIADIDY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +EVEAL+LEA MIK+  P+FNI L+DDK++PYI +T     P ++K R        
Sbjct: 66  IITDSEVEALILEATMIKKHNPKFNIRLKDDKTYPYIKVTTNEDYPRVFKTRIVKKDGDR 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS--VFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+  V+AV KT+  L+  F LR C  +      + R CL + I++C GPC   +  +
Sbjct: 126 YFGPYTDVNAVHKTLKLLRDLFPLRDCKKNISCKEKKDRACLNYHIEKCLGPCVNSVDVD 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y   V E   FL G   NL E++   M QA  ++++E A   RD++ A+  +  +    
Sbjct: 186 EYKSMVDEVCLFLKGKQQNLIEELKEEMEQAADRQEFEQAAELRDQIEAIKKVTENQKVV 245

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +   D  +  H  +LAC+Q      G+  G   F ++  +     + L+ FL+Q+Y 
Sbjct: 246 SSDFADQDVMATSHQDDLACVQVMAVRNGRLVGEEDFIMEGTTPEAIDETLTAFLKQYYM 305

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           +    P+ ILL  E E+  ++E    ++ G +V +  P+ G KR++I  A  NA  +   
Sbjct: 306 NINYIPKEILLEIEIEDKEIMEDWLNEKRGSRVYLKTPQHGAKRQLINMAQRNAKYNLKD 365

Query: 355 KL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
            L             +K+      L   P RIE +D S+I G   V  +VV       K 
Sbjct: 366 YLIKSDYKSRKPLKAVKELQTYLDLEEPPVRIEGFDISNIQGTDPVASLVVFENGTAQKG 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR+F +    V+  DD  MM+ V++RR+S+L++ +                 PD++++D
Sbjct: 426 DYRRFKIKT--VEGPDDFGMMQEVVKRRYSRLLEED--------------IKLPDLILID 469

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQL+A   VL +L ++N+  +I +AK  +     E F   + E ++L      LY +
Sbjct: 470 GGKGQLNAVLEVLDELGIDNQ-PVIGLAKKEE-----EIFVEGQSEPIILPRDSEALYLL 523

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDEAHRFA+  HRK R +   +S LD+I GIG  R+  LLQ FG++  + ++S E L
Sbjct: 524 QRVRDEAHRFAVNYHRKLRSRRVTHSMLDDIPGIGQKRRERLLQYFGSLDKVRKASVEEL 583

Query: 590 ASIEGISKKIACKIYNHFHKNT 611
           + ++GIS++IA  +YN+  ++T
Sbjct: 584 SEVKGISEQIATTVYNYLREHT 605


>gi|70730923|ref|YP_260664.1| excinuclease ABC subunit C [Pseudomonas fluorescens Pf-5]
 gi|92058694|sp|Q4KAR9|UVRC_PSEF5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|68345222|gb|AAY92828.1| UvrABC system, C protein [Pseudomonas fluorescens Pf-5]
          Length = 607

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 216/609 (35%), Positives = 332/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+ R+ SY        +   ++++I  I  T+T  E E
Sbjct: 17  RPGVYRMFDSDARLLYVGKAKNLKNRLSSYFRKTGQAPKTAALVARIAQIETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P    HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-DFPRFSIHRGAKKQKGKYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS +++RTRPCL +QIKRC  PC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFMVRQCEDSYYKNRTRPCLQYQIKRCKAPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L ++++  M  A    D+E A   RD+++ L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALTDELSTAMEAAASTLDFEKAAELRDQISLLRRVQDQQSMEGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303
            + N   AC+       G+  G+  FF +   E   A+++S FL Q++   P    P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEDVAEVMSAFLGQYFVSSPERDLPSEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+   L  +  +  G ++ I+   +G + +  + A+ NA ++ + +L+      
Sbjct: 316 IVNVVHEDFPTLIAAIDELRGRELTISHRVRGTRARWQQLAVTNAEQALSARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   +   L   P+R+E YD SH  G + V   VV G  G +K+ YR++N+    V 
Sbjct: 376 ARFEALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RRFS+L   E  L              PD++++DGGKGQLS A+ VL
Sbjct: 434 AGDDYAAMHQALTRRFSKLKDGEGKL--------------PDILLVDGGKGQLSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELAVPDLI-LLGVAKGATRKAGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPKRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 LIYANLHSE 607


>gi|319404068|emb|CBI77656.1| excinuclease ABC subunit C [Bartonella rochalimae ATCC BAA-1498]
          Length = 634

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 307/611 (50%), Positives = 420/611 (68%), Gaps = 5/611 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+ML+  G +LY+GKA NL+KR+  Y   + H  RIT MI + N++ F VT
Sbjct: 23  KNLPHKPGVYRMLNENGDILYIGKARNLKKRVSHYTREHGHNDRITRMIRETNHMEFVVT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDK+ PYI+ITD H+ PALYKH  + T +  YFG
Sbjct: 83  HTETEALLLEANLIKRLQPRFNVLLRDDKTLPYIIITDDHRAPALYKHHGARTRKAHYFG 142

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS +AV +TIN LQR F LR+C DSV  + TRPCLL+QIKRCS PCT EISS  Y++ 
Sbjct: 143 PFASSEAVTQTINVLQRAFLLRTCTDSVLENCTRPCLLYQIKRCSAPCTHEISSSDYLQL 202

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V +AK FLSG + ++K  + + M++A    D+E AI +RDRL+ALSHIQ+H         
Sbjct: 203 VKKAKAFLSGKSQSVKNDMVQAMHKAAENLDFERAITYRDRLSALSHIQSHQSINPQTVK 262

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++   + + CIQ  FF  GQN G  ++F K D   ++++IL+ FL QFY +KP P
Sbjct: 263 EADVFAIAQQEGMTCIQVFFFRMGQNWGNRSYFPKADPSFSSSEILASFLIQFYDNKPIP 322

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLS   +E  LL  +   +  +K+ +++PKQGE++ ++  A  NA+ +  +KLS   
Sbjct: 323 KLILLSNTIDEEILLTEALSLKANHKISLSLPKQGERKALVNHAYTNAYEALQRKLSETS 382

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +H+  L +  K F L H P+RIE+YDNSH+MG +AVG M+VV + GFVKNQYRKFN+   
Sbjct: 383 AHKKFLCNIVKTFQLSHTPRRIEVYDNSHLMGTNAVGVMIVVDQTGFVKNQYRKFNICST 442

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK-KQEYSFPSWPDVVILDGGKGQLSAA 479
           D+K  +D  MM+ V+ERRF +L+K     N +     E S+P WPD++++DGG+ Q++  
Sbjct: 443 DIKPGNDLGMMKEVIERRFLRLLKTYGLPNKNKNIGYEDSYPLWPDLILIDGGQEQINIT 502

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             VL +L +++ IT+I IAKGP R AG+E+FF+K  +   L   DPILYF+QRLRDEAHR
Sbjct: 503 NTVLSELGLDDFITVIGIAKGPDRKAGLERFFMKGKQPFTLPPHDPILYFLQRLRDEAHR 562

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI TH+ +RKK    +PLDEI  IGP RKR LL  FG+ K +SR+S E L  + GISK+
Sbjct: 563 FAIGTHKAKRKKETFKNPLDEIENIGPTRKRALLNYFGSSKAVSRASIEDLTKVTGISKE 622

Query: 599 IACKIYNHFHK 609
           IA KI+N+F+K
Sbjct: 623 IAYKIHNYFNK 633


>gi|119385043|ref|YP_916099.1| excinuclease ABC subunit C [Paracoccus denitrificans PD1222]
 gi|119374810|gb|ABL70403.1| Excinuclease ABC subunit C [Paracoccus denitrificans PD1222]
          Length = 623

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 270/611 (44%), Positives = 377/611 (61%), Gaps = 14/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD  G VLYVGKA NL+ R+ +Y   + H+ RI  MI +  ++ F  
Sbjct: 22  LKTLDGSPGVYRMLDQQGAVLYVGKARNLRARVSNYARGSGHSARIARMIRETCSMMFLT 81

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+   H    + KHR +   +G Y+
Sbjct: 82  TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVAKSHPFAQIKKHRGAKAEKGDYY 141

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LRSC D+ F  RTRPCLL+QIKRCS PC G I  E+Y  
Sbjct: 142 GPFASAGAVNRTLNQLQRVFLLRSCTDATFSSRTRPCLLYQIKRCSAPCVGRIGLEEYNA 201

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V +A+ FL G +  ++ ++AR M +A    +YE A   RDR+ AL+ +Q+         
Sbjct: 202 LVADAELFLQGKSTAIQAQLAREMAEAAEAMEYERAAALRDRIKALTAVQSVQAINPRGV 261

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +L+     AC+Q  F    Q+ G   F+ + +   +  +++  FL QFY  K  
Sbjct: 262 PEADVIALHMEGGQACVQVFFIRGNQSWGNRDFYPRLNGVESADEVMQAFLAQFYDGKVP 321

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ILLS   E+  L+  +  ++ G KV + VP++GEK +++E AL NA  S  +++S  
Sbjct: 322 PRLILLSHGIEDPDLMTEALSEKAGRKVTLGVPRRGEKAELVENALRNARESLARRMSES 381

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            + Q +L+   +   LP +P+RIE+YDNSHI G +AVG MVV G  G++K+QYRKFN+  
Sbjct: 382 AAQQRLLEGLAEALDLPAVPQRIEVYDNSHIQGTNAVGGMVVAGPEGWIKSQYRKFNIKG 441

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            ++   DD  MM+ VL RRFS+L+K + +              WPD++++DGG GQ+SA 
Sbjct: 442 TEITPGDDFGMMKEVLTRRFSRLLKEDPDRQTDA---------WPDLLLIDGGAGQVSAV 492

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++ ++ VE+ I +I +AKG  R  G E+F         L M DP+LYFIQRLRDEAHR
Sbjct: 493 HEIMAEMGVED-IPMIGVAKGEDRDHGKEEFHRHGQRPFALRMNDPVLYFIQRLRDEAHR 551

Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           +AI THR +R KA   +PLDEI GIG  RKR LL  FG+ K +SR+    L ++EGIS+ 
Sbjct: 552 WAIGTHRAKRAKAVMANPLDEIAGIGAARKRALLAHFGSAKAVSRAGLADLVAVEGISEA 611

Query: 599 IACKIYNHFHK 609
           +A KI +HFHK
Sbjct: 612 MAQKIVDHFHK 622


>gi|119505767|ref|ZP_01627835.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2080]
 gi|119458401|gb|EAW39508.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2080]
          Length = 608

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 224/612 (36%), Positives = 328/612 (53%), Gaps = 23/612 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVYQM    G +LYVGKA NL+ R+ SY  ++  T +   ++++I +I+ TV
Sbjct: 10  LKSLTTRPGVYQMYGKEGDLLYVGKAKNLKNRVTSYFRASGLTAKTMALVNRIQDIQVTV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TEV+ALLLE N+IK  +P +NI L+DDKS+PYI ++   + P L  HR     +G YF
Sbjct: 70  TSTEVDALLLEHNLIKEHRPPYNISLKDDKSYPYIYLSSHDRWPRLALHRGPKRRKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ S  AV  T++ LQ+   +R C DS FR+R+RPCL +QI RCSGPC G +S E Y E
Sbjct: 130 GPYPSAGAVRSTLHLLQKVLKVRQCQDSYFRNRSRPCLQYQIGRCSGPCVGLVSDENYAE 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            V + + FL G +  L  ++A  M  A     +E A   RD+L  L  +Q+         
Sbjct: 190 QVEKTELFLKGKSQELMGRLADEMESAATDLRFEEAAERRDQLMQLQKVQSVQGIEGVRG 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKP 298
            +D  ++      AC+Q  F    +  G+ T++  T  +     +L  F+  FY    + 
Sbjct: 250 NLDVLAVAVAGGSACVQVLFIREARVLGSRTYYPPTRLDEDVNAVLEAFMPLFYLSGKQV 309

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I++++  E    L  +   +   KV+I    +  + + +E A   A  + T  LS 
Sbjct: 310 IPHEIIVTDLPEGAESLAEALSIRAERKVEIRSKVREARARWLEMAQQTADTNLTAHLSG 369

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           + +    L+   ++  L   P R+E +D SH  G + V   VV   +G  K  YRKFN+ 
Sbjct: 370 KQTMAGRLESLRRELDLDTPPSRMECFDISHSSGEATVASCVVFDNSGPRKADYRKFNVE 429

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              ++  DD A M+  LERR+ +L   E               S PDV+ +DGGKGQ+S 
Sbjct: 430 G--IQPGDDYAAMQQALERRYKRLAAGE--------------GSLPDVLFIDGGKGQVSQ 473

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEA 537
           A  VL    +EN + ++ +AKG  R AG E     + G+  VL   +P L+ IQ++RDEA
Sbjct: 474 AMSVLGNYGIEN-VRVLGVAKGTTRKAGFETLVDGETGKESVLRGDNPALHLIQQIRDEA 532

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR RR KA   S L+ I G+G  R+R LL+ FG+   +S +  E L  IEGIS
Sbjct: 533 HRFAITGHRARRAKARKTSTLEGIPGVGAKRRRELLRHFGSASGVSGARVEELVKIEGIS 592

Query: 597 KKIACKIYNHFH 608
             +A  IY+H H
Sbjct: 593 SSLAQTIYDHLH 604


>gi|310815055|ref|YP_003963019.1| excinuclease ABC, C subunit [Ketogulonicigenium vulgare Y25]
 gi|308753790|gb|ADO41719.1| excinuclease ABC, C subunit [Ketogulonicigenium vulgare Y25]
          Length = 618

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 266/610 (43%), Positives = 371/610 (60%), Gaps = 14/610 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +++   PGVY+MLD   RVLYVGKA NL+ R+ +Y     H+ RI  MI +   + F  
Sbjct: 16  LKRLDGSPGVYRMLDGESRVLYVGKAKNLRARVSNYAREGGHSVRIDRMIRETRAMMFLT 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TEVEALLLE N+IK+LKP +N+LLRDDKSFP I I+  H  P + KHR +   +  YF
Sbjct: 76  TKTEVEALLLEQNLIKQLKPHYNVLLRDDKSFPNIRISRDHAFPQIAKHRGARNEKADYF 135

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQ+ F LR C DS F +R+RPCLL QIKRCS PC G+IS+  Y  
Sbjct: 136 GPFASAGAVNRTLNQLQKAFQLRVCEDSSFNNRSRPCLLHQIKRCSAPCVGKISAADYAA 195

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V EAK FL G +  ++E++   M  A+   ++E A   RDR+ AL+ +Q          
Sbjct: 196 EVAEAKLFLQGRSAAIQERLGAEMAAASEAMEFERAAALRDRIRALTAVQTSQGINPRTV 255

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +L+     AC+Q  F    QN G   F+ K + E+   +++  F+ QFY ++  
Sbjct: 256 PEADVIALHMEHGQACVQVFFIRANQNWGNHDFYPKLNEETDAGEVMQAFVGQFYANRDP 315

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
              +LLS+  ++  L+  +  ++ G K++I VP++GE+ +++E AL NA  S  +++S  
Sbjct: 316 ARVVLLSQGLDDPDLMAQALSEKAGRKIEIAVPQRGERAELVEGALRNARESLGRRMSET 375

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            + + +L    + F L   P+RIE+YDNSHI G  A+G MVV G  GF KNQYRKFN+  
Sbjct: 376 ATQRRLLDGLAEAFDLDGPPRRIELYDNSHIQGAHAIGAMVVAGPEGFEKNQYRKFNIKD 435

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            +    DD AMMR VL RRF +L++ +          +     WPD++ +DGG GQ+SA 
Sbjct: 436 PNTTPGDDFAMMREVLTRRFQRLLRED---------PDRQTAEWPDLLFIDGGAGQVSAV 486

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
            GVL +L VE+ + +I IAKG  R  G E+F+      + L   DP+LYFIQR+RDE HR
Sbjct: 487 HGVLVELGVED-VAMIGIAKGEDRDLGKEEFYRHGRPVMALRHNDPVLYFIQRMRDEVHR 545

Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   + LDE+ G+GP RKR LLQ FG+ K +S +  E L ++ GIS  
Sbjct: 546 FAIGTHRAKRSKAFTTNALDELPGVGPARKRALLQHFGSAKDVSNAHLEDLKAVPGISDA 605

Query: 599 IACKIYNHFH 608
           +A KIYN+FH
Sbjct: 606 MAEKIYNYFH 615


>gi|325277353|ref|ZP_08142978.1| excinuclease ABC subunit C [Pseudomonas sp. TJI-51]
 gi|324097543|gb|EGB95764.1| excinuclease ABC subunit C [Pseudomonas sp. TJI-51]
          Length = 607

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 210/609 (34%), Positives = 335/609 (55%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D+  R+LYVGKA NL+KR+ SY        +   ++++I  +  T+T  E E
Sbjct: 17  RPGVYRMFDVDARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVARIAQVETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQNLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPCT  +S+++Y E V  + 
Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCTDLVSAQEYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G +  L  ++   M +A +  D+E A   RD+++ L  +Q+          +D  +
Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALDFEKAAELRDQISLLRRVQDQQYIEGGTGDVDVIA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303
            + N   AC+       G+  G+  FF +   E   A++++ FL Q+Y        P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEDLAEVMAAFLSQYYLGNAERELPGEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+ + +  +     G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVHEDFAAITEALHTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHMA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   +   L  +P+R+E YD SH  G + V   VV G  G +K+ YR+FN+    + 
Sbjct: 376 ARFEALAEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--IT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+ ++   E  L              PDV+++DGGKGQL+ A+ V+
Sbjct: 434 AGDDYAAMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVM 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
           ++L     +T++ +AKG  R AG E  ++        L      L+ IQ++RDEAHRFAI
Sbjct: 480 QELGFS-ELTLLGVAKGVTRKAGFETLYLNDVHHEFTLKGDSAALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR KA   S L+++ G+GP R+R LL+ FG ++ ++R+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY   H  
Sbjct: 599 SIYASLHSE 607


>gi|26990793|ref|NP_746218.1| excinuclease ABC subunit C [Pseudomonas putida KT2440]
 gi|32130289|sp|Q88FJ7|UVRC_PSEPK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|24985797|gb|AAN69682.1|AE016604_4 excinuclease ABC, C subunit [Pseudomonas putida KT2440]
          Length = 607

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 212/609 (34%), Positives = 335/609 (55%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+KR+ SY        +   ++++I  +  T+T  E E
Sbjct: 17  RPGVYRMFDGEARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVARIAQVETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQNLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPCT  +++E+Y E V  + 
Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCTDLVTAEEYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G +  L  ++   M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALDFEKAAELRDQIALLRRVQDQQYIEGGSGDVDVIA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303
            + N   AC+       G+  G+  FF +   E   A++++ FL Q+Y        P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+ + +  +     G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVHEDFNAITEALHTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHMA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   +   L  +P+R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 ARFEALAEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIED--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+ ++   E  L              PDV+++DGGKGQL+ A+ V+
Sbjct: 434 AGDDYAAMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVM 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
           ++L   + +T++ +AKG  R AG E  ++        L      L+ IQ++RDEAHRFAI
Sbjct: 480 QELGFTD-LTLLGVAKGVTRKAGFETLYLNDVHHEFTLKGDSSALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR KA   S L+++ G+GP R+R LL+ FG ++ ++R+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY   H  
Sbjct: 599 SIYASLHSE 607


>gi|296116317|ref|ZP_06834933.1| excinuclease ABC subunit C [Gluconacetobacter hansenii ATCC 23769]
 gi|295977136|gb|EFG83898.1| excinuclease ABC subunit C [Gluconacetobacter hansenii ATCC 23769]
          Length = 641

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 266/614 (43%), Positives = 356/614 (57%), Gaps = 15/614 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + + MP  PGVY+ML   G VLYVGKA  L+KR+ SY   +    R+  M+S+   +   
Sbjct: 34  ALQTMPLSPGVYRMLGRKGEVLYVGKALALKKRVTSYTQVHRLPERLRRMVSETAYMEIV 93

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEAN IKR++PR+NILLRDDKS+P+I++TD+H+ P + KHR       SY
Sbjct: 94  TTHTEAEALLLEANYIKRMQPRYNILLRDDKSYPWIILTDRHEFPQIAKHRGKPVKGASY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFAS  +V +T+N LQ+ F LRSC DSV + RTRPCLL QI RCS PC   IS E Y 
Sbjct: 154 WGPFASAWSVNQTLNLLQKAFLLRSCTDSVLQSRTRPCLLHQIHRCSAPCVDLISQEDYG 213

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---- 237
             V +A+ FLSG N  + E++ R M +A     +E A   RDR+  LS +Q         
Sbjct: 214 ALVQQARDFLSGKNPRMHEELVRQMEEAAGALQFERAAAIRDRIRGLSAMQQDASVINPT 273

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
             +  D  +++     +CI+  F   G+N G   FF     +   A +L+ FL QFY DK
Sbjct: 274 TMSDADIVAIWQIAGQSCIEVFFIRGGRNNGNRAFFPSHARDEGAADVLAAFLAQFYDDK 333

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
           P P  IL++    +  LL  +   + G +V+I  P++GEKR ++E A +NA  +  +KL+
Sbjct: 334 PPPGQILVNHAISDNELLGRALELRRGKRVEIIHPQRGEKRAVLEHAELNAREALERKLA 393

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                  +L+     F L + P RIE YDNSHIMG  A G MVV G  GF K  YRKF +
Sbjct: 394 ESAGQARLLRGVADLFGLANPPGRIETYDNSHIMGSHAYGVMVVAGPEGFEKRAYRKFAI 453

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   DD  MMR VLERRFS+ +++ E               WPD++++DGG GQ S
Sbjct: 454 KGPVTPG-DDFGMMREVLERRFSRALRDREEGIRPD--------DWPDILLIDGGAGQYS 504

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A + VL +L V + +T++ IAKG  R AG E F         L  RDP+LY++QRLRDEA
Sbjct: 505 AVRAVLDELGVTD-VTLVGIAKGIDRDAGREWFHTATRPPFQLPPRDPVLYYLQRLRDEA 563

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAITTHR  R K    S LD+I G+GP RKR LL  FG+ + + ++    L S  GIS
Sbjct: 564 HRFAITTHRAGRSKTLVKSELDDIPGVGPARKRALLNRFGSARGVRQAGLGELESAPGIS 623

Query: 597 KKIACKIYNHFHKN 610
           +  A  IY  FH +
Sbjct: 624 RDTARTIYGFFHPD 637


>gi|312960119|ref|ZP_07774631.1| UvrABC system protein C [Pseudomonas fluorescens WH6]
 gi|311285613|gb|EFQ64182.1| UvrABC system protein C [Pseudomonas fluorescens WH6]
          Length = 607

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 217/609 (35%), Positives = 336/609 (55%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+ R+ SY   +    +   ++++I  +  T+T  E E
Sbjct: 17  RPGVYRMFDSEARLLYVGKAKNLKNRLASYFRKSGLAPKTAALVARIAQVETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-DFPRLSIHRGAKKAKGKYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TFF+R C DS +++RTRPCL +QIKRC  PC G + S +Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFFVRQCEDSFYKNRTRPCLQYQIKRCKAPCVGLVDSAEYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L ++++  M QA    D+E A   RD+++ L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALTDELSSAMEQAAGTLDFERAAELRDQISLLRRVQDQQSMEGGTGDVDVIA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303
            + N   AC+       G+  G+  FF +T  +   A++++ FL Q+Y   P    P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQTGIDEDVAEVMAAFLGQYYVSSPERDLPSEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+   L  +  +    ++ I+   +G + +  + A+ NA ++ + +L+      
Sbjct: 316 IVNVVHEDFPTLIEAIHELRDRELDISHRVRGTRARWQQLAVTNAEQALSARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
                  +   L   P+R+E YD SH  G + V   VV G  G +K+ YR++N+    V 
Sbjct: 376 ARFDALAEVLKLDEPPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRYNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RRFS+L   E  L              PD++++DGGKGQLS A+ VL
Sbjct: 434 AGDDYAAMHQALTRRFSKLKDGEGKL--------------PDILLVDGGKGQLSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELAVPDLI-LLGVAKGATRKAGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 LIYANLHSE 607


>gi|229589686|ref|YP_002871805.1| excinuclease ABC subunit C [Pseudomonas fluorescens SBW25]
 gi|259710344|sp|C3K7T2|UVRC_PSEFS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229361552|emb|CAY48428.1| excinuclease uvrABC system protein C [Pseudomonas fluorescens
           SBW25]
          Length = 607

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 217/609 (35%), Positives = 335/609 (55%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+ R+ SY   +    +   ++++I  +  T+T  E E
Sbjct: 17  RPGVYRMFDSEARLLYVGKAKNLKNRLASYFRKSGLAPKTAALVARIAQVETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-NFPRLSIHRGAKKQKGKYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TFF+R C DS +++RTRPCL +QIKRC  PC G +   +Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFFVRQCEDSFYKNRTRPCLQYQIKRCKAPCVGLVDPAEYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L ++++  M QA    D+E A   RD+++ L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALTDELSGAMEQAASTLDFERAAELRDQISLLRRVQDQQSMEGGTGDVDVIA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303
            + N   AC+       G+  G+  FF +T  +   A++++ FL Q+Y   P    P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQTGIDEEVAEVMAAFLGQYYVSSPERDLPSEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+   L  +  +  G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVHEDFPTLIEAIHELRGRELDISHRVRGTRARWQQLAVTNAEQALGARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
                  +   L   P+R+E YD SH  G + V   VV G  G +K+ YR++N+    V 
Sbjct: 376 ARFDALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRYNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RRFS+L   E  L              PD++++DGGKGQLS A+ VL
Sbjct: 434 AGDDYAAMHQALTRRFSKLKDGEGKL--------------PDILLVDGGKGQLSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELAVPDLI-LLGVAKGATRKAGFETLYLNDSAHEFTLKGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 LIYANLHSE 607


>gi|148547004|ref|YP_001267106.1| excinuclease ABC subunit C [Pseudomonas putida F1]
 gi|189038076|sp|A5W1B2|UVRC_PSEP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|148511062|gb|ABQ77922.1| Excinuclease ABC subunit C [Pseudomonas putida F1]
          Length = 607

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 212/609 (34%), Positives = 334/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+KR+ SY        +   ++++I  +  T+T  E E
Sbjct: 17  RPGVYRMFDGEARLLYVGKAKNLKKRLASYFRKAGLAPKTAALVARIAQVETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQNLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPCT  +++E+Y E V  + 
Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCTDLVTAEEYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G +  L  ++   M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALDFEKAAELRDQIALLRRVQDQQYIEGGSGDVDVIA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303
            + N   AC+       G+  G+  FF +   E   A++++ FL Q+Y        P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+ + +  +     G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVHEDFNAITEALHTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHMA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   +   L  +P+R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 ARFEALAEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+ ++   E  L              PDV+++DGGKGQL+ A+ V+
Sbjct: 434 AGDDYAAMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVM 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
           + L   + +T++ +AKG  R AG E  ++        L      L+ IQ++RDEAHRFAI
Sbjct: 480 QALGFTD-LTLLGVAKGVTRKAGFETLYLNDVHHEFTLKGDSSALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR KA   S L+++ G+GP R+R LL+ FG ++ ++R+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY   H  
Sbjct: 599 SIYASLHSE 607


>gi|260576439|ref|ZP_05844429.1| excinuclease ABC, C subunit [Rhodobacter sp. SW2]
 gi|259021322|gb|EEW24628.1| excinuclease ABC, C subunit [Rhodobacter sp. SW2]
          Length = 632

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 262/610 (42%), Positives = 369/610 (60%), Gaps = 14/610 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+ML+ A  VLYVGKA NL+ R+ +Y  ++ H+ RI  MIS+  ++ F  
Sbjct: 30  LKGLDGSPGVYRMLNSASEVLYVGKARNLRARVSNYARASGHSGRIARMISETASMMFLT 89

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKPR+N+LLRDDKSFP I+I   H  P + KHR   +  GSYF
Sbjct: 90  TRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPDIVIPSGHPFPMIRKHRGKRSEPGSYF 149

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T+N LQR F LR+C D+VF  RTRPCLL+QIKRC+ PC G+++ E Y  
Sbjct: 150 GPFASAGAVNRTLNQLQRVFLLRTCTDAVFDGRTRPCLLYQIKRCAAPCVGKVTPEDYAT 209

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            + +A KFL G +  ++  +AR M +A+   ++E A   RDR+ AL+ +Q+         
Sbjct: 210 LLADATKFLQGRSTTVQANLARAMAEASEAMEFERAAALRDRIKALTQVQSAQGINPRGV 269

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +L+     AC+Q  F    Q+ G   F+ +T + +   +I+  FL QFY DK  
Sbjct: 270 AEADVIALHLEGGQACVQVFFIRANQSWGNRDFYPRTGAGAEAPEIMEAFLAQFYDDKEP 329

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ILLS   +   L+      + G KV + VP++GEK +++E A  NA  S  +K++  
Sbjct: 330 PRLILLSHPVDNPDLVTQLLSDRAGRKVTLGVPQRGEKAELVENAARNARESLARKVAEG 389

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            S   +L    + F L   PKRIE+YDNSHI G +AVG M+V G  GF+K+QYRKFN+  
Sbjct: 390 ASQNRLLAGLAEAFDLDAPPKRIEVYDNSHIQGSNAVGGMIVAGAEGFLKSQYRKFNIKS 449

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +     DD  MM+ VL RRF +L+K + +              WPD++++DGG GQ+S  
Sbjct: 450 DAGANSDDFGMMKEVLTRRFERLLKEDPDRKSDA---------WPDLLLIDGGAGQVSVV 500

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++  L V++ I ++ +AKG  R AG E+F         L M DP+LYF+QRLRDEAHR
Sbjct: 501 AEIMAGLGVDD-IAMVGVAKGVDRDAGKEEFHRPGQRPFALRMNDPVLYFVQRLRDEAHR 559

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           +AI  HR +R KA   +PLDEI G+G  RK+ LL  FG+ K +SR+    L ++ GIS  
Sbjct: 560 WAIGAHRAKRAKAVSATPLDEIPGVGAARKKALLAHFGSAKAVSRAGISDLMAVTGISAA 619

Query: 599 IACKIYNHFH 608
           +A  I +HF+
Sbjct: 620 MAQTISDHFN 629


>gi|149203063|ref|ZP_01880034.1| excinuclease ABC subunit C [Roseovarius sp. TM1035]
 gi|149143609|gb|EDM31645.1| excinuclease ABC subunit C [Roseovarius sp. TM1035]
          Length = 622

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 264/609 (43%), Positives = 379/609 (62%), Gaps = 15/609 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+MLD   RVLYVGKA NL+ R+ +Y     HT RI  MIS+  ++ F  T 
Sbjct: 23  TLDASPGVYRMLDAQARVLYVGKARNLRARVANYARPTGHTGRIARMISETASMMFLTTA 82

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T  H+ P + KHR +   +G+Y+GP
Sbjct: 83  TETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVT-GHEFPMIKKHRGAKREKGAYYGP 141

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +T+  LQR F LR+C D++F  RTRPCL +QIKRC+ PC G+I   +Y   V
Sbjct: 142 FASAGAVNRTLAQLQRVFQLRNCTDAMFESRTRPCLQYQIKRCTAPCVGKIDRAEYATQV 201

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            +A+++LSG +  ++EK+A  M +A    +YE A   RDR+ A++ +Q          + 
Sbjct: 202 SDAERYLSGRSTEIQEKLAVQMAEAAEAMEYERAAALRDRIKAMTQVQTAQGINPRTVDE 261

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +L+  +  AC+Q  F   GQN G   F+ +   +   A+ L  F+ QFY  K  P 
Sbjct: 262 ADVIALHLEQGQACVQVFFIRGGQNWGNQDFYPRVGVDVEEAEALEAFIGQFYDSKEPPR 321

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +LLS   E   L++ +   + G KV + VP +GEK ++++ A+ NA  S  +K++   +
Sbjct: 322 ALLLSHPIENADLMQQALSDKLGRKVTLNVPLRGEKAELVDAAMRNARESLARKMAETAT 381

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L+   + F LP  P+RIE+YDNSHI G  AVG M+V G  G +KN YRKFN+  +D
Sbjct: 382 TGKLLRGLAEAFDLPGPPQRIEVYDNSHIQGTDAVGAMIVAGPEGMMKNHYRKFNIRGDD 441

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD  MM+ VL RRF +L+K +          + S   WPD++++DGG GQ+SA   
Sbjct: 442 ITPGDDFGMMKEVLTRRFKRLLKED---------PDRSQGHWPDLLLIDGGAGQVSAVAS 492

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +++++ VE+ I ++ +AKG  R AG E+F       + L   DP+LYF+QRLRDEAHRFA
Sbjct: 493 IMREMGVED-IPMVGVAKGVDRDAGKEEFHRVGKHPMALRHNDPVLYFVQRLRDEAHRFA 551

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I THR +R KA   +PLDE+ GIG  RKR LL  FG+ K +SR++   L ++EG+S  +A
Sbjct: 552 IGTHRAKRAKAVGATPLDEVPGIGAARKRALLAHFGSAKAVSRANLADLRAVEGVSDAMA 611

Query: 601 CKIYNHFHK 609
            K+Y+ FH+
Sbjct: 612 QKLYDFFHE 620


>gi|313498052|gb|ADR59418.1| UvrC [Pseudomonas putida BIRD-1]
          Length = 607

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/609 (34%), Positives = 334/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+KR+ SY        +   ++++I  +  T+T  E E
Sbjct: 17  RPGVYRMFDGEARLLYVGKAKNLKKRLASYFRKAGLAPKTAALVARIAQVETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQNLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC  PCT  +++E+Y E V  + 
Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKAPCTDLVTAEEYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G +  L  ++   M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALDFEKAAELRDQIALLRRVQDQQYIEGGSGDVDVIA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENI 303
            + N   AC+       G+  G+  FF +   E   A++++ FL Q+Y        P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+ + +  +     G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVHEDFNAITEALHTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHMA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   +   L  +P+R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 ARFEALAEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+ ++   E  L              PDV+++DGGKGQL+ A+ V+
Sbjct: 434 AGDDYAAMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVM 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
           ++L   + +T++ +AKG  R AG E  ++        L      L+ IQ++RDEAHRFAI
Sbjct: 480 QELGFTD-LTLLGVAKGVTRKAGFETLYLNDVHHEFTLKGDSSALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR KA   S L+++ G+GP R+R LL+ FG ++ ++R+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY   H  
Sbjct: 599 SIYASLHSE 607


>gi|27262180|gb|AAN87371.1| exconuclease ABC subunit C [Heliobacillus mobilis]
          Length = 630

 Score =  555 bits (1429), Expect = e-156,   Method: Composition-based stats.
 Identities = 220/627 (35%), Positives = 338/627 (53%), Gaps = 22/627 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             + +P+ PGVY M D  GRV+YVGKA NL+ R++SY  S  N T +   ++++I ++  
Sbjct: 8   KLKNLPDRPGVYLMKDETGRVIYVGKAINLKNRVRSYFQSAKNLTAKTQALVARIQDLET 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  KPR+NI+LRDDK++PY+ +T +   P L   R      G 
Sbjct: 68  IVTDSELEALILECNLIKEHKPRYNIMLRDDKTYPYLKVTLQETYPRLLMTRRLEKDGGK 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ S  AV +T+N L+  F LR+C+   F  R RPCL + I RC  PC G++S ++Y
Sbjct: 128 YFGPYTSAGAVRETLNLLRSIFPLRTCSRKDFDQRKRPCLNYHIGRCLAPCFGKVSRDEY 187

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
           M  +     FL G   +L  ++   M+QA    ++E A   R+R+ AL  +      +  
Sbjct: 188 MHMLKNIIAFLEGKEDDLLRRLREEMHQAAEDLEFERAAELRNRIQALEQVMEKQKVVST 247

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++    N  C+Q  F   G+  G   F L+   E   +++++ F++Q+Y+  
Sbjct: 248 DLEDQDVIAMARGFNQVCVQIFFIRGGKLIGREHFILEGTDEMERSEVITAFVKQYYSRS 307

Query: 298 PCPENILL----SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349
                 +L     E  EE  +L     ++   KV+I VPK+G+K K+IE    NA     
Sbjct: 308 EFVPREILLQEPLESQEEEEVLSRFLKEKRKGKVEIRVPKRGDKLKLIEMVAKNALLTLE 367

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +   ++   +   +  + D  +  AL   P RIE +D S+ MG  +V  MVV        
Sbjct: 368 QLQNEQQRKKSMTEEAVLDLQRYLALEEPPWRIECFDISNTMGKESVASMVVFEGGAPKN 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVI 468
            +YR+F +    V   +D A M+ VL RRFS+  +  + +           F   PD++I
Sbjct: 428 AEYRRFRIKT--VDGPNDFASMQEVLNRRFSRAREEAQAVEEGQLDPMSAKFAVLPDLII 485

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQLS+A+  L+++   + I    +AK  +       F     E ++L      LY
Sbjct: 486 VDGGKGQLSSARETLRRVG-YDYIPTFGLAKENEW-----LFHESSSEPIILPRGSRSLY 539

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +QR+RDEAHRFAIT HRK R +A   S LDEI+GIGP RK  LL+ FG+VK I+ ++ E
Sbjct: 540 LVQRIRDEAHRFAITYHRKLRAQAQTASVLDEISGIGPKRKTALLRHFGSVKKIAEATLE 599

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHT 614
            LA+++G++ +IA ++ NHF      T
Sbjct: 600 QLAAVDGMNVEIAERVLNHFRAREKET 626


>gi|85705901|ref|ZP_01036997.1| excinuclease ABC subunit C [Roseovarius sp. 217]
 gi|85669489|gb|EAQ24354.1| excinuclease ABC subunit C [Roseovarius sp. 217]
          Length = 622

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 265/609 (43%), Positives = 376/609 (61%), Gaps = 15/609 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+MLD   RVLYVGKA NL+ R+ +Y   + HT RI  MIS+  ++ F  T 
Sbjct: 23  SLDASPGVYRMLDAQARVLYVGKARNLRARVSNYARPSGHTGRIARMISETASMMFLTTA 82

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T  H  P + KHR +   +GSY+GP
Sbjct: 83  TETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVT-GHDFPMIKKHRGAKREKGSYYGP 141

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +T+  LQR F LR+C D++F  RTRPCL  QIKRC+ PC G+IS   Y   V
Sbjct: 142 FASAGAVNRTLAQLQRVFQLRNCTDAMFESRTRPCLQHQIKRCTAPCVGKISRADYAVQV 201

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            +A+++LSG +  ++EK+A  M +A    ++E A   RDR+ A++ +Q          + 
Sbjct: 202 SDAERYLSGRSTEIQEKLAAQMAEAAEAMEFERAAALRDRIKAMTQVQTAQGINPRTVDE 261

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +L+     AC+Q  F   GQN G   F+ +   +   A+ L  F+ QFY  K  P 
Sbjct: 262 ADVIALHLENGQACVQVFFIRGGQNWGNQDFYPRVGVDVEEAEALEAFIGQFYDSKEPPR 321

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +LLS   E+  L++ +   + G KV +TVP +GEK ++I+ A+ NA  S  +KL+   +
Sbjct: 322 GLLLSHPIEDADLMQQALSDKLGRKVTLTVPLRGEKAELIDAAMRNARESLARKLAETAT 381

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L+   + F L   P+RIE+YDNSHI G  AVG M+V G  G +KNQYRKFN+  + 
Sbjct: 382 QGKLLRGLAEAFDLAGPPQRIEVYDNSHIQGTDAVGAMIVAGPEGMMKNQYRKFNIRGDA 441

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD  MM+ VL RRF +L+K +          + S   WPD++++DGG GQ+S    
Sbjct: 442 LTPGDDFGMMKEVLTRRFKRLLKED---------PDRSQGQWPDLLLIDGGAGQVSVVAS 492

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +++++ VE+ I ++ +AKG  R  G E+F       + L   DP+LYF+QRLRDEAHRFA
Sbjct: 493 IMREMGVED-IPMVGVAKGVDRDHGKEEFHRVGKHPMALRHNDPVLYFVQRLRDEAHRFA 551

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I THR +R KA   +PLDE+ GIG  RKR LL  FG+ K +SR++   L ++EG+S  +A
Sbjct: 552 IGTHRAKRAKAVGATPLDEVPGIGAARKRALLAHFGSAKAVSRANLADLRAVEGVSDAMA 611

Query: 601 CKIYNHFHK 609
            K+Y+ FH+
Sbjct: 612 QKLYDFFHE 620


>gi|319405510|emb|CBI79129.1| excinuclease ABC subunit C [Bartonella sp. AR 15-3]
          Length = 659

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 307/611 (50%), Positives = 419/611 (68%), Gaps = 5/611 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY+ML+  G +LYVGKA NL+KR+  Y H + H +RI  MI + N++ F VT
Sbjct: 48  KNLPHKPGVYRMLNENGDILYVGKARNLKKRVSHYSHEHGHNNRIIRMIRETNHMEFVVT 107

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL PRFN+LLRDDK+ PYI+ITD H+ PALYKHR + T +  YFG
Sbjct: 108 HTETEALLLEANLIKRLHPRFNVLLRDDKTLPYIIITDDHRAPALYKHRGARTRKAHYFG 167

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS +AV +TIN LQR F LR+C DSV  + TRPCLL+QIKRCS PCT EIS+  Y++ 
Sbjct: 168 PFASSEAVTQTINVLQRAFLLRTCTDSVLENCTRPCLLYQIKRCSAPCTYEISNSDYLQL 227

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V +AK FLSG + ++K  + + M++A    D+E AI +R+RL+ALS+IQ+          
Sbjct: 228 VKKAKAFLSGKSQSIKNDMVQAMHKAAENLDFERAITYRNRLSALSYIQSRQSINPQTVK 287

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++   + + CIQ  FF  GQN G  ++F K D   ++++IL+ FL QFY +KP P
Sbjct: 288 EADVFAIAQQEGMTCIQVFFFRMGQNWGNRSYFPKADPSFSSSEILASFLIQFYDNKPIP 347

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ILLS   EE  L+  +   +  +K+ +++PKQGE++ ++  A  NAH +  +KLS   
Sbjct: 348 KLILLSNTIEEEILITQALSLKANHKIVLSLPKQGERKALVNHAYTNAHEALQRKLSETS 407

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +H+ +L    K F L H P+RIE+YDNSHIMG +AVG M+VV + GFVKNQYRKFN+   
Sbjct: 408 AHKKLLHSIVKTFQLSHTPRRIEVYDNSHIMGTNAVGVMIVVDQTGFVKNQYRKFNICST 467

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK-KQEYSFPSWPDVVILDGGKGQLSAA 479
           ++K  DD  MM+ V+ERRF +L+K     N +     E S P WPD++++DGG+GQ++  
Sbjct: 468 NIKPGDDLGMMKEVIERRFLRLLKTYGLPNKNKNIGYEDSCPPWPDLILIDGGQGQINIT 527

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             VL +L++ + IT+I IAKG  R AG+E+FFVK  +   L   +PILYF+QRLRDEAHR
Sbjct: 528 NAVLSELDLGDFITVIGIAKGVDRKAGLERFFVKGKQPFTLPPDNPILYFLQRLRDEAHR 587

Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA+ TH+ +RKK A  +PLDEI  IGP RKR LL  FG+ K +SR+S E L  + GISK 
Sbjct: 588 FAVETHKAKRKKEAFKNPLDEIEKIGPTRKRALLNYFGSSKAVSRASVEDLTKVVGISKA 647

Query: 599 IACKIYNHFHK 609
           IA KI+N+F+K
Sbjct: 648 IAYKIHNYFNK 658


>gi|1174921|sp|P32966|UVRC_PSEFL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|472402|gb|AAA98758.1| UVR excinuclease subunit C [Pseudomonas fluorescens]
          Length = 607

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 217/609 (35%), Positives = 333/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+ R+ SY        +   ++ +I  I  T+T  E E
Sbjct: 17  RPGVYRMFDSDTRLLYVGKAKNLKSRLASYFRKTGLAPKTAALVGRIAQIETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P    HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRFSIHRGAKKQKGKYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS +++RTRPCL +QIKRC  PC G + +E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFMVRQCEDSYYKNRTRPCLQYQIKRCKAPCVGLVEAEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L ++++  M QA    D+E A   RD+++ L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALTDELSAGMEQAASTLDFEKAAELRDQISLLRRVQDQQSMEGGSGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303
            + N   AC+       G+  G+  FF +   E   A+++S FL Q++   P    P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMSAFLGQYFLSSPERDLPSEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+   L  +  +  G ++ I+   +G + +  + A+ NA ++ + +L+      
Sbjct: 316 IVNVVHEDFPALIAAIQELRGRELSISHRVRGTRARWQQLAVTNAEQALSARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   +   L   P+R+E YD SH  G + V   VV G  G +K+ YR++N+    V 
Sbjct: 376 ARFEALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RRFS+L   E  L              PD++++DGGKGQLS A+ VL
Sbjct: 434 AGDDYAAMHQALTRRFSKLKDGEGKL--------------PDILLVDGGKGQLSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R  G E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELAVPDLI-LLGVAKGATRKTGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+++ G+GP R+R LL+ FG ++ +SR+S E +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEDVAGVGPKRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 LIYANLHSE 607


>gi|58040698|ref|YP_192662.1| excinuclease ABC subunit C [Gluconobacter oxydans 621H]
 gi|81351338|sp|Q5FNP1|UVRC_GLUOX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|58003112|gb|AAW62006.1| UvrC, excinuclease ABC subunit C [Gluconobacter oxydans 621H]
          Length = 645

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 269/613 (43%), Positives = 369/613 (60%), Gaps = 17/613 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + + +P  PGVY+ML   G VLYVGKA +L+KR+ SY+  N    R+  M+S   ++   
Sbjct: 34  ALKTIPYSPGVYRMLSEKGEVLYVGKALSLKKRVSSYIRINQLPERLRRMVSMTVSMEIV 93

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T TE +ALLLEAN IKR+KPRFNILLRDDKS+P++++T+ H+ P + K R       +Y
Sbjct: 94  ITRTEADALLLEANYIKRMKPRFNILLRDDKSYPWLMLTESHEFPQITKQRGKPVKGATY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFA+  AV +T+N +QR+F LRSC+D+V   RTRPCLL+QIKRCS PC   IS E Y 
Sbjct: 154 WGPFANAWAVNQTLNLVQRSFLLRSCSDAVLNSRTRPCLLYQIKRCSAPCVDRISKEDYA 213

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E V EA++FLSG +  L++++   M QA+ + +YE A   RDR+   + IQ  +      
Sbjct: 214 ELVSEARQFLSGHSTELQQRLVAEMEQASQELNYERAASIRDRIRGFASIQGSSTINPTS 273

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            N  D  +++     +CIQ  F    +N G   F+     E T A +LS F+ QFY +KP
Sbjct: 274 INDADIMTIWQEAGQSCIQVFFIRGSRNNGNRAFYPAHAEEETAADVLSAFMIQFYDNKP 333

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P +IL++ E  E  L+E +   + G KV+I  P++GEK+ ++E A +NA  +  +KL+ 
Sbjct: 334 PPPSILVNCELPEPKLVEEALSIRRGQKVEILRPQRGEKKDVVEHAALNAREALERKLAE 393

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
               + +L+   + F LP IP+RIE YDNSHIMG +  G MVV G  GF K  YRK+ + 
Sbjct: 394 NTGQRRLLEGVAEVFGLPEIPQRIETYDNSHIMGQAPYGVMVVGGPEGFNKRAYRKYAIK 453

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD  MMR V+ERRF    +N E               WPD++++DGG GQ +A
Sbjct: 454 GPVTPG-DDFGMMREVMERRFGHRSENGERPE-----------DWPDLLLIDGGLGQFNA 501

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            + VL  L V   I I++IAKGP R AG E FF +      L  RDP+LY++QRLRDEAH
Sbjct: 502 VRAVLADLGVTG-IPIVAIAKGPDRDAGREWFFTETKSPFQLPPRDPVLYYLQRLRDEAH 560

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAITTHR  R K    S LD + GIG  RK+ LL  FG+ K + ++S E L +  GIS 
Sbjct: 561 RFAITTHRAGRSKGLRSSELDHVPGIGAARKKALLNHFGSAKSVRQASLEELENAPGISS 620

Query: 598 KIACKIYNHFHKN 610
             A  IY HFH  
Sbjct: 621 STATAIYGHFHPE 633


>gi|167648233|ref|YP_001685896.1| excinuclease ABC subunit C [Caulobacter sp. K31]
 gi|167350663|gb|ABZ73398.1| excinuclease ABC, C subunit [Caulobacter sp. K31]
          Length = 634

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 272/616 (44%), Positives = 381/616 (61%), Gaps = 20/616 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P+ PGVY+M+     VLYVGKA +L+KR+  Y     HT+RI HM+    ++ F  T 
Sbjct: 29  RLPDSPGVYRMIGEDDEVLYVGKAKSLKKRVVQYAQGRFHTNRIAHMVDATRSMEFVTTR 88

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK LKPRFN+LLRDDKSFP I+I   H  P L KHR + TI+G YFGP
Sbjct: 89  TEADALLLEINLIKSLKPRFNVLLRDDKSFPEIMIRRDHDAPQLRKHRGAHTIKGDYFGP 148

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +T+N+LQ+ F LRSC+DSV+  R+RPC+L QIKRC+ PCTG I  + Y   V
Sbjct: 149 FASAWAVNRTLNTLQKAFLLRSCSDSVYETRSRPCMLHQIKRCAAPCTGLIGKDDYQALV 208

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            +A+ FL G +  +   +A+ M +A    ++E A   RDR+ AL+ +   +       + 
Sbjct: 209 DQAEDFLRGKSRAVMATMAKAMEEAAEDLEFERAARLRDRIRALAAVAQESQINPETVDE 268

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL------KTDSESTNAQILSYFLRQFYT 295
            D  +L+     AC+Q  FF  GQN G   +F       + +  S  AQ ++ FL QFY 
Sbjct: 269 ADVVALHIEGGQACVQVFFFRAGQNWGNRAYFPRITGAAEEEGVSEEAQAMTAFLGQFYD 328

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           DKP P  IL + E  E  LL  +F  + G KV+I  PK+GEK  ++  AL NA  +  +K
Sbjct: 329 DKPIPRLILTNIEPAERDLLAEAFCLKSGRKVEIATPKRGEKADLVGHALTNAREALGRK 388

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           ++   +   +L    + F L   P+RIE+YDNSHI G +AVG M+V G  GF+K QYRKF
Sbjct: 389 MAEGSAQTKLLAGVGEAFGLDGPPERIEVYDNSHIQGTNAVGGMIVAGPEGFMKGQYRKF 448

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+   ++   DD  MM+ VL+RRF++L+K EE  +   +         PD+V++DGGKGQ
Sbjct: 449 NIKSTELTPGDDYGMMKEVLKRRFARLVKEEEEGDSSAR---------PDLVLVDGGKGQ 499

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           L A   V+  L V++ I ++ +AKGP R AG+E+FF+      +L  + P+LY++QRLRD
Sbjct: 500 LDAVIEVMADLGVDD-IAVVGVAKGPDRDAGLERFFMPDKTPFMLEPKSPVLYYLQRLRD 558

Query: 536 EAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI  HR RR      +PLDEI G+GP RKR LL +FG+ K +SR+  E L  +EG
Sbjct: 559 EAHRFAIGAHRTRRSMDLKKNPLDEIEGVGPGRKRALLNAFGSAKGVSRAGVEDLMKVEG 618

Query: 595 ISKKIACKIYNHFHKN 610
           +S+ +A +I+  F K+
Sbjct: 619 VSQPLAERIHAFFRKS 634


>gi|114328891|ref|YP_746048.1| excinuclease ABC subunit C [Granulibacter bethesdensis CGDNIH1]
 gi|119367654|sp|Q0BPX7|UVRC_GRABC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|114317065|gb|ABI63125.1| excinuclease ABC subunit C [Granulibacter bethesdensis CGDNIH1]
          Length = 644

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 267/614 (43%), Positives = 369/614 (60%), Gaps = 14/614 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+MLD  G  LYVGKA +L+KR+ SY   +    R+  M+S+  ++    
Sbjct: 37  LKLLPDRPGVYRMLDGQGEALYVGKARSLKKRVASYTQIHRLPERLRRMVSETVSMEIVT 96

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSY 121
           T TE EALLLEAN+IKRLKPRFNI+LRDDKS+P++++T+ H  P + KHR +      SY
Sbjct: 97  THTEAEALLLEANLIKRLKPRFNIVLRDDKSYPWLMLTEDHAFPQIMKHRGAQTRKAASY 156

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFAS  AV +T+ ++QR F LRSC+DSVF +R+RPCLLFQI+RCS PC   IS E Y 
Sbjct: 157 WGPFASAWAVNQTVTAMQRIFLLRSCSDSVFANRSRPCLLFQIRRCSAPCVDRISQEDYA 216

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E V +A+ FLSG    ++  +AR M QA    ++E A   RDR+  L+H+Q         
Sbjct: 217 ELVDQARAFLSGRGTEIQRDLARQMEQAAEALEFERAAAIRDRIRGLTHVQGTAVVNPAS 276

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +++ +   +C+Q  F   G N G   F+    S  T   +L  F+ QFY DKP
Sbjct: 277 IGNADVIAVWQDAGQSCVQVFFIRGGHNNGNRAFYPAHTSAETAQDVLGAFIAQFYDDKP 336

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  +LL+    E  L+  +   + G +V++ VP +GEKR ++  A  NA  +  +KL+ 
Sbjct: 337 PPPLLLLNHTIAEQELVSEALSLKAGRRVELHVPVRGEKRAVVAHAETNAREALERKLAE 396

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                 +L    + F LP  P RIEIYDNSHIMG +  G MVV G  G+ K+ YRKF++ 
Sbjct: 397 SAGQNRLLDGVAELFDLPTRPNRIEIYDNSHIMGTNPYGVMVVAGPEGWNKSAYRKFSIR 456

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD AMMR +LERRFS+ +K                 +WPD+V++DGG GQLSA
Sbjct: 457 GPITPG-DDFAMMREMLERRFSRGLKERAEGPEGE-------ANWPDLVLIDGGAGQLSA 508

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            +G+L ++ V + + +++IAKGP R AG E F  +      L  RDP+LY++QRLRDEAH
Sbjct: 509 VRGILDEIGVTD-VKLVAIAKGPDRDAGREWFHTEGQAPFQLPPRDPVLYYLQRLRDEAH 567

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAITTHR  R K    S LD+I+GIG  RKR LL  FG+ + + ++    L +  GISK
Sbjct: 568 RFAITTHRAGRSKTLVRSELDDIDGIGAARKRALLNHFGSARGVKQAGLAALEATPGISK 627

Query: 598 KIACKIYNHFHKNT 611
           + A +IY HFH   
Sbjct: 628 ETARRIYAHFHPGA 641


>gi|254786407|ref|YP_003073836.1| excinuclease ABC subunit C [Teredinibacter turnerae T7901]
 gi|237683988|gb|ACR11252.1| excinuclease ABC, C subunit [Teredinibacter turnerae T7901]
          Length = 619

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 231/614 (37%), Positives = 340/614 (55%), Gaps = 23/614 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVYQM D  G +LYVGKA NL+ R+ SY  ++  T +   ++S+I NI  TV
Sbjct: 23  LKNLTTKPGVYQMYDAEGGILYVGKAKNLKNRVSSYFRNSGLTIKTQALVSRIRNIEITV 82

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N+IK  KP FNILLRDDKSFPYI ++     P L  HR +    G YF
Sbjct: 83  TPSEAEALVLEHNLIKSQKPPFNILLRDDKSFPYIFLSSGEPHPRLALHRGAKKKVGRYF 142

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +V AV +++N LQ+TF +R C DSV+R+RTRPCLL+QI+RCSGPC   +S  +Y  
Sbjct: 143 GPFPNVSAVRESLNFLQKTFGVRQCEDSVYRNRTRPCLLYQIERCSGPCVEAVSEREYAA 202

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241
            V +   FL G N +L++ +A  M QA+    +E A ++RDR+ AL  +Q        + 
Sbjct: 203 DVEQTVLFLEGKNDSLQKNLAGAMEQASANLAFEQAALYRDRITALRQVQAQQVIESGQM 262

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK--- 297
            MD  +       AC+   +   G+  G+  ++ K   E+  A +LS F+   Y      
Sbjct: 263 NMDVVACAAEAGAACVHILYVRQGRVVGSKNYYPKDRLENDEATVLSAFISHHYLGGTSM 322

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P ++++S   ++   +  +       +V+IT   +  + K +  AL  A  +   KL+
Sbjct: 323 DIPPSVIVSHALDDEKAIGDAVALNSNKQVQITSNVRTYRAKWVAMALQAARLNLRSKLN 382

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
           +  S     +   K       P+RIE +D SH  G   V   VV  +NG  K+ YR+FN+
Sbjct: 383 SAQSLLQRFEQLQKIMGFDEAPERIECFDISHSSGEKTVASCVVFDQNGPRKSDYRRFNI 442

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M   L RR+S+L K  + L              PD++++DGGKGQL 
Sbjct: 443 EG--ITAGDDYAAMEQALNRRYSRLQKEGKKL--------------PDLLLIDGGKGQLG 486

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            A  VL +L ++  +T++ +AKG  R AG E      G   V+    P L+ IQ++RDEA
Sbjct: 487 KAIEVLAELGIQ-EVTLLGVAKGTTRKAGFETLVKPDGTEQVMAADSPALHLIQQVRDEA 545

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT H++RR +A   S L+ I GIGP R+R +L  FG ++ + R+S + LA + GIS
Sbjct: 546 HRFAITGHKQRRDQARRTSTLENIPGIGPKRRREMLHYFGGLQEVMRASIDDLAKVPGIS 605

Query: 597 KKIACKIYNHFHKN 610
           KK+A ++Y+  H  
Sbjct: 606 KKMAEEVYSALHSE 619


>gi|163794446|ref|ZP_02188417.1| Nuclease subunit of the excinuclease complex [alpha proteobacterium
           BAL199]
 gi|159180170|gb|EDP64693.1| Nuclease subunit of the excinuclease complex [alpha proteobacterium
           BAL199]
          Length = 649

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 278/620 (44%), Positives = 395/620 (63%), Gaps = 24/620 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MP  PGVY+MLD  G VLYVGKA +L+KR+ +Y H     +RI  MIS+   +    T 
Sbjct: 39  TMPSAPGVYRMLDEDGDVLYVGKARSLKKRVINYTHPAKLPNRIFRMISETARMEVVTTH 98

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TEVEALLLE+N+IKRLKPR+N+LLRDDKSFP+IL+T  H  P + KHR + + +G YFGP
Sbjct: 99  TEVEALLLESNLIKRLKPRYNVLLRDDKSFPHILMTGDHTYPQIVKHRGARSRKGDYFGP 158

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +TI +LQR F LR+C DSVF  RTRPCL +QIKRCS PC G +   +Y E V
Sbjct: 159 FASAGAVNRTIAALQRAFLLRNCTDSVFSARTRPCLQYQIKRCSAPCVGFVEQAEYAELV 218

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
            EA++FL+G +H++++++A  M +A    ++E+A I+R+R+ AL+ IQ H D   +    
Sbjct: 219 DEARRFLTGRSHDVQQQLAVKMQEAAEALEFETAAIYRNRIRALTAIQAHQDINVDGIEE 278

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +L+     +CIQ  FF  G N G   +F   D E+ +  +LS FL QFY DKP P 
Sbjct: 279 ADVIALHGEGGHSCIQVFFFRAGSNFGNRAYFPSHDKETEDGDVLSAFLGQFYDDKPPPW 338

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            IL+S    E SL+  +   + G KV +  P++G KRK++E A +NA  +  ++++   S
Sbjct: 339 LILISHPVPEASLMAEALSTRAGRKVVLLAPQRGSKRKLMEHATLNAREALGRRMAESAS 398

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP-- 419
            + +L+   + F L   P+R+E+YDNSH  G ++VG M+V G  GF+K  YRKFN+    
Sbjct: 399 QRRLLEGVAQVFGLEATPERVEVYDNSHTGGTNSVGGMIVAGPEGFIKAAYRKFNIRNVD 458

Query: 420 --------NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
                   ++++  DD AMMR VL RRF++ +K +          E    +WPD+V++DG
Sbjct: 459 DGAQDDRVDELEAGDDYAMMRQVLIRRFARALKED---------PERKSGTWPDLVLIDG 509

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G   L+ A  V  +L +++ + + SIAKGP R AG E+FF+   E  +L  RDP+LYF+Q
Sbjct: 510 GAAHLAVAHEVFAELGIDD-LAVASIAKGPDRDAGRERFFMAGREPFMLERRDPVLYFLQ 568

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           RLRDEAHRFAI THR RR KA   +PLDEI+GIG  RK+ LL  FG+ + ++R+    L 
Sbjct: 569 RLRDEAHRFAIETHRARRTKALGGNPLDEISGIGARRKKALLHHFGSARGVARAGLADLN 628

Query: 591 SIEGISKKIACKIYNHFHKN 610
           +++GIS  +A ++Y+ FH +
Sbjct: 629 AVDGISTAVAKRVYDFFHDD 648


>gi|220932457|ref|YP_002509365.1| excinuclease ABC, C subunit [Halothermothrix orenii H 168]
 gi|219993767|gb|ACL70370.1| excinuclease ABC, C subunit [Halothermothrix orenii H 168]
          Length = 607

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 221/621 (35%), Positives = 350/621 (56%), Gaps = 33/621 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P+ PGVY M D  G V+YVGKA +L++R++SY    NHT +   M+  I +  + 
Sbjct: 7   QLKRLPDRPGVYLMKDETGEVIYVGKAKSLRRRVRSYFRKGNHTFKTKIMVKHIADFDYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TEVEA +LEAN+IK+  P+FNI L+DDK++PYI +T +   P ++K R        Y
Sbjct: 67  VTDTEVEAFILEANLIKKYNPKFNIRLKDDKTYPYIKVTVQEDFPRIFKTRLVKNDGNRY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179
           FGPF  V+A+ KTI+ L+  F LR+C  ++   +   RPCL + I +C GPC G I    
Sbjct: 127 FGPFTDVNAIYKTIDVLKDLFSLRTCKKNLEAGKPEKRPCLNYHIGKCVGPCIGAIDRNS 186

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E V     FLSG    L  ++ + M QA  K+++E A   RD + AL +I      + 
Sbjct: 187 YRELVDRVCLFLSGKQDELINEVEKEMYQAAEKKNFEKAARFRDAVRALKNISAQQKVMS 246

Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           +     D  +L   +  AC+Q  F   G+  G   F ++   E +N  I+  FL+Q+Y  
Sbjct: 247 SKNINQDIIALVEEEGEACVQVLFIRNGRLIGQEYFLMEGVDEESNTDIMVSFLQQYYEQ 306

Query: 297 KP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            P  P+ I+++    +T LLE    ++ G KVKI +P +GEK++++E A  NA ++  ++
Sbjct: 307 APEIPQEIVINTHVSQTELLEDWLQQKKGKKVKILIPLKGEKKRLVEMASKNASQNLKKE 366

Query: 356 L----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
           L      +  ++  L    +   L   P  IE +D S+I G   V  MVV  +    K  
Sbjct: 367 LIRRKYQKQRNEKALDQLVEYLVLSSKPVHIEGFDISNIQGSDPVASMVVFKDGVPSKAD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR+F +    V   +D AMM+ V++RR+S+L++ E +L              PD++++DG
Sbjct: 427 YRRFRIKT--VSGPNDFAMMQEVVKRRYSRLLEEEGDL--------------PDLILIDG 470

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQL+AA  VLK++N++  + I  +AK  +     E F   + E +++  + P L+ +Q
Sbjct: 471 GKGQLNAALEVLKEMNLD-YLDIAGLAKREE-----EVFLPGQKEPVIIPRKSPALHLLQ 524

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R+RDEAHRFA++ HRK R +   ++ LDEI G+GP R++ LL  FG++  I +++   L 
Sbjct: 525 RVRDEAHRFAVSYHRKLRSRRLTHTMLDEIPGVGPKRRKALLSHFGSLGAIRKATIGQLK 584

Query: 591 SIEGISKKIACKIYNHFHKNT 611
            ++GIS K A  IY++  ++T
Sbjct: 585 EVDGISNKTARVIYDYLREHT 605


>gi|71907666|ref|YP_285253.1| excinuclease ABC subunit C [Dechloromonas aromatica RCB]
 gi|90111065|sp|Q47EE8|UVRC_DECAR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|71847287|gb|AAZ46783.1| Excinuclease ABC subunit C [Dechloromonas aromatica RCB]
          Length = 603

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 224/611 (36%), Positives = 329/611 (53%), Gaps = 25/611 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + E PGVY+MLDI G VLYVGKA NL+KR+ SY   N  + RI HM+SQI +I  T T 
Sbjct: 11  TLTELPGVYRMLDIGGNVLYVGKAKNLKKRVASYFRENLSSPRIAHMVSQIASIETTATR 70

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK L PR+NIL RDDKS+PYI+++   K P L   R +   +  YFGP
Sbjct: 71  TEAEALLLENNLIKSLAPRYNILFRDDKSYPYIVLSKG-KFPRLGFFRGNPDRKADYFGP 129

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  AV  +I+ +Q+ F LR+C D+VF +R+RPCLL+QIKRCSGPC G IS++ Y   +
Sbjct: 130 YPSSWAVRDSIHLMQKMFRLRTCEDTVFSNRSRPCLLYQIKRCSGPCVGFISADDYAADI 189

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A  FL G    +  ++ ++M +A+ K  +E A + RD++ +L  +Q       +    
Sbjct: 190 QLAAMFLLGKQQEVTRRLTKSMEEASAKLAFEQAAVFRDQIQSLHQVQEKQFVSSSKGED 249

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
           +D           C+       G++ G   FF    ++S  +   + F+RQ Y   P P 
Sbjct: 250 VDVLVAIKEAGQLCVNLAMVRGGRHLGDRPFFPTNAADSEPSDACAAFIRQHYAAHPAPA 309

Query: 302 NILLSEEAEETS--LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
            IL      E      E++  +  G  V +   +    +  +E A+ NA  +   K    
Sbjct: 310 RILSYPLPSEDEAGETEVALAELAGRPVPVQEGRGATHKAWVEMAIQNARLAILAKNQAT 369

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
              +  L        LP    RIE +D SH MG + V   VV   N   K+ YR+FN+  
Sbjct: 370 AQQEQRLAALQDALQLPEPIARIECFDISHTMGEATVASCVVYEGNRMKKSDYRRFNIRD 429

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             ++  DD A MR  + RR+  +   E               + PD++++DGGKGQ+S+A
Sbjct: 430 --IQAGDDYAAMRQAVSRRYDSIAGGE--------------GTAPDLILIDGGKGQVSSA 473

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAH 538
              L  L +   + +I +AKG +R  G+E   F +  E L L  + P L+ IQ +RDEAH
Sbjct: 474 FSALADLGLT-HLPMIGVAKGEERKPGLETLIFPEGREPLQLPPQHPALHLIQEIRDEAH 532

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR +R KA   S L+ + GIGP R++ L+  FG +  +  +S + LA + G+S+
Sbjct: 533 RFAITGHRAQRGKARKTSKLESLPGIGPARRKALVARFGGLPGVLAASIDQLAEVPGVSR 592

Query: 598 KIACKIYNHFH 608
           ++A KI++  H
Sbjct: 593 EMAEKIHSALH 603


>gi|89095317|ref|ZP_01168236.1| excinuclease ABC subunit C [Oceanospirillum sp. MED92]
 gi|89080436|gb|EAR59689.1| excinuclease ABC subunit C [Oceanospirillum sp. MED92]
          Length = 613

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 220/614 (35%), Positives = 338/614 (55%), Gaps = 23/614 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +Q+ + PGVYQM D   ++LY+GKA NL+ R+ SY  +   + +   ++S+I +++ TV
Sbjct: 16  LKQLTKRPGVYQMYDAQEKLLYIGKAKNLKNRVSSYFRATGLSVKTRSLVSKIADVQITV 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLE N+IK  +P +NILLRDDKS+PYI I+DK   PA+   R +    G YF
Sbjct: 76  TNSETEALLLEQNLIKEYRPPYNILLRDDKSYPYIFISDKDTYPAVRFSRGAKRKSGKYF 135

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ S  AV  ++N LQ+ F +R C +S F++R+RPCL +QIKRC+ PC   IS ++Y E
Sbjct: 136 GPYPSGGAVRDSLNLLQKIFRIRQCEESFFKNRSRPCLQYQIKRCTAPCVEAISPQEYQE 195

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            +  A  FL G N  + ++IA+ M  A+ + ++E A ++RD+L +L  +Q          
Sbjct: 196 DIKHAAMFLEGKNKAVMDEIAQEMEAASEQLNFEQAALYRDQLVSLQKVQEQQYVTGLQG 255

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDKP 298
             D           C+   F   G+  G+ + + K   E T  +I+S F+ Q+Y    + 
Sbjct: 256 DADVIGCDLQPGGVCLHMLFVRGGRVIGSKSHYPKVSIEETRDEIVSAFIAQWYLGAQRE 315

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I+   E  +   L+ +  +    KV ++   +GE+    + A  NA +  +  L+ 
Sbjct: 316 IPAYIITPFELSDEDCLKAALAEARDKKVALSHNVRGERSGWQKLAQTNAEQQLSSYLAN 375

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           + +      +  +   L  IP R+E +D SH  G + V   VV  +NG +K+ YR FN+ 
Sbjct: 376 KKNIYNRYLELQELLGLDDIPTRLECFDISHSSGEATVASCVVFDKNGPLKSDYRHFNIE 435

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   DD A M   L RR+S++ K E  L              PD++I+DGGKGQ++ 
Sbjct: 436 G--ITPGDDYAAMYQALHRRYSRIKKEEAKL--------------PDLLIVDGGKGQVTQ 479

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEA 537
           A  VL +L +  ++ +I IAKGP R AG E       G+  VL      L+ +Q +RDEA
Sbjct: 480 AMEVLDELQIA-QVLVIGIAKGPTRKAGFEVLISGDTGDETVLENDSGALHLLQHIRDEA 538

Query: 538 HRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT H  +R K    S L++I G+GP R+R LL+ FG ++ I R+S E +A +  IS
Sbjct: 539 HRFAITGHRARRGKARKRSVLEDIPGVGPKRRRELLRHFGGIQEIQRASVEEIAKVSTIS 598

Query: 597 KKIACKIYNHFHKN 610
             IA +IY+  H +
Sbjct: 599 LTIAEEIYSALHPD 612


>gi|86139077|ref|ZP_01057648.1| UvrABC system protein C [Roseobacter sp. MED193]
 gi|85824308|gb|EAQ44512.1| UvrABC system protein C [Roseobacter sp. MED193]
          Length = 643

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 265/609 (43%), Positives = 379/609 (62%), Gaps = 15/609 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y    N + RI  MI+    + F  T
Sbjct: 43  KTLDASPGVYRMLDSESRVLYVGKARNLRARVSNYTRPGN-SPRIERMIALTTRMMFLTT 101

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+   H    L KHR +   +GSYFG
Sbjct: 102 RTETEALLLEQNLIKQLKPKYNVLLRDDKSFPSILVAKDHAFAQLKKHRGARKQKGSYFG 161

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFA   AV +T+N LQ+ F LR C++++F  RTRPCL FQIKRCS PCTGEIS E+Y   
Sbjct: 162 PFAGAGAVNRTLNQLQKAFLLRDCSNAMFESRTRPCLQFQIKRCSAPCTGEISEEEYSLS 221

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240
           V +A++FL+G +  ++E++A  M +A+   ++E A   RDR+ AL+ +Q+          
Sbjct: 222 VRDAERFLAGRSTKIQEELAAEMMKASEAMEFERAAALRDRIKALTQVQSVQGINPRGVA 281

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   L+  +  AC+Q  F    QN G   F+ + +++ + A+++  FL QFY +K  P
Sbjct: 282 EADIIGLHMERGQACVQVFFIRANQNWGNQDFYPRVEADMSAAEVMEAFLGQFYDNKEPP 341

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + ++LS+  E T L+E +   +   KV+I VP +GEK +++  A+ NA  S  ++++   
Sbjct: 342 KQLILSDAIENTDLMEEALSGKAERKVEILVPLRGEKTELVAGAVRNARESLARRMAESA 401

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   +LK   + F L   P+RIE+YDNSHI G +AVG M+V G  GFVKN YRKFN+  +
Sbjct: 402 TQARLLKGLAEAFGLKAPPQRIEVYDNSHIQGTNAVGGMIVAGPEGFVKNAYRKFNIKGD 461

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D+   DD  MM+ VL RRFS+L K +                WPD++++DGG GQ+SA  
Sbjct: 462 DLVPGDDFGMMKEVLNRRFSRLKKED---------PVREKGLWPDLLLIDGGAGQVSAVA 512

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            ++ +  VE+ I ++ +AKG  R  G E+F  +   A  L   DP+LYF+QRLRDEAHRF
Sbjct: 513 EIMAEHGVED-IPMVGVAKGVDRDHGKEEFHRQGENAFALQRNDPVLYFVQRLRDEAHRF 571

Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR +R KA   +PLDE+ G+G  RKR LL+ FG+ K +SR+    L +++GIS  +
Sbjct: 572 AIGTHRAKRAKAVGATPLDEVPGVGAGRKRALLKHFGSAKAVSRADLLDLKAVDGISNAL 631

Query: 600 ACKIYNHFH 608
           A  IY+ FH
Sbjct: 632 AETIYDFFH 640


>gi|330808751|ref|YP_004353213.1| uvrABC system protein C [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376859|gb|AEA68209.1| uvrABC system protein C [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 607

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 218/609 (35%), Positives = 332/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+KR+ SY        +   ++ +I  I  T+T  E E
Sbjct: 17  RPGVYRMFDGDARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVGRIAQIETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-AFPRLSIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TFF+R C DS +++RTRPCL +QIKRC  PC G +  + Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFFVRQCEDSYYKNRTRPCLQYQIKRCKAPCVGFVEPQVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L ++++  M  A +  ++E A   RD+++ L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALTDELSAAMEDAAVNLEFERAAELRDQISLLRRVQDQQSMEGGSGDVDVIA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303
            + N   AC+       G+  G+  FF +   E   A++++ FL Q+Y   P    P  +
Sbjct: 256 AFINPGGACVHLISVRGGRVLGSKNFFPQVGIEEDVAEVMAAFLGQYYISSPERDLPAEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+   L  +  K  G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVHEDFPALIEAIDKLRGRELTISHRVRGTRARWQQLAVTNAEQALGARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +       L   P+R+E YD SH  G + V   VV G  G +K+ YR++N+    V 
Sbjct: 376 ARFEALADVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRYNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RRF +L   E  L              PD++++DGGKGQLS A+ VL
Sbjct: 434 PGDDYAAMHQALMRRFGKLKDGEGKL--------------PDILLVDGGKGQLSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELMVPDLI-LLGVAKGATRKAGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S E +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|149912752|ref|ZP_01901286.1| excinuclease ABC subunit C [Roseobacter sp. AzwK-3b]
 gi|149813158|gb|EDM72984.1| excinuclease ABC subunit C [Roseobacter sp. AzwK-3b]
          Length = 622

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 261/611 (42%), Positives = 377/611 (61%), Gaps = 15/611 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   RVLYVGKA NL+ R+ +Y   + HT RI  MI +  ++ F  
Sbjct: 21  LKTLDSSPGVYRMLDAQARVLYVGKARNLRARVSNYARPSGHTARIDRMIRETASMMFLT 80

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKPR+N+LLRDDKSFP IL+T  H+ P + KHR +   +G Y+
Sbjct: 81  TSTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVT-GHEFPMIKKHRGAKKEKGHYY 139

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T++ LQR F LR+C D+ F  RTRPCL +QIKRC+ PC G I    Y  
Sbjct: 140 GPFASAGAVNRTLSHLQRAFQLRNCTDTQFESRTRPCLQYQIKRCTAPCVGYIDKADYAA 199

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            V +A+++LSG +  ++ K+   M +A    +YE A   RDR+ AL+ +Q          
Sbjct: 200 AVKDAERYLSGRSTEIQTKLKAEMAEAAEAMEYERAAALRDRIKALTQVQTAQGINPRTV 259

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D  +L+  K  AC+Q  F   GQN G   F+ +  ++   A++L  F+ QFY  K  
Sbjct: 260 TEADILALHLEKGQACVQVFFIRAGQNWGNRDFYPRVGADVEEAEVLEAFIGQFYDSKDP 319

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
              ++LS   E   L+  +   + G KV++ VP++GEK ++++ AL NA  S  +K++  
Sbjct: 320 ARQLILSHPIENADLMTEALSGKLGRKVELLVPQRGEKAELVDAALRNARESLARKMAET 379

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +LK   + F LP  PKR+E+YDNSHI G  AVG M+V G +GF+KN YRKFN+  
Sbjct: 380 ATQAKLLKGLAEAFDLPDPPKRVEVYDNSHIQGAHAVGAMIVAGPDGFMKNSYRKFNIRG 439

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           +++   DD  MM+ VL RRF +L+K +          E     WPD++++DGG GQ+SA 
Sbjct: 440 DELTPGDDFGMMKEVLTRRFKRLLKED---------PERDQGHWPDLLLIDGGAGQVSAV 490

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             ++++L VE+ I ++ +AKG  R  G E+F       + L   DP+LYF+QR+RDEAHR
Sbjct: 491 AQIMRELGVED-IPMVGVAKGVDRDHGKEEFHRTGKRPMALQRNDPVLYFVQRMRDEAHR 549

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR +R KA   +PLD+I G+G  RKR LL  FG+ K +SR++   L ++EG+S+ 
Sbjct: 550 FAIGTHRAKRAKAMGATPLDDIPGVGAARKRALLAHFGSAKAVSRANLSDLKAVEGVSEG 609

Query: 599 IACKIYNHFHK 609
           +A K+Y+ FH+
Sbjct: 610 LAQKVYDFFHE 620


>gi|119370543|sp|Q607S4|UVRC_METCA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 610

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 243/612 (39%), Positives = 345/612 (56%), Gaps = 21/612 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+MLD  G V+YVGKA NL+KR+ S+      + +   M++++  I  TVT 
Sbjct: 16  TLTGAPGVYKMLDRNGEVIYVGKAKNLKKRVASHFAQRGSSPKQNAMVARVQAIEVTVTR 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE  +IKR KPR+NI LRDDKS+PYI ++   + P L  HR S    G +FGP
Sbjct: 76  TEGEALLLENQLIKRHKPRYNINLRDDKSYPYIYVSTHQEFPRLAFHRGSRARPGRFFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV  ++ +LQ+ F +R C DS F +RTRPCL +QI+RC+GPC G + +E Y E V
Sbjct: 136 FPSAAAVRDSLKTLQKIFPVRQCEDSYFVNRTRPCLQYQIERCTGPCVGLVGAETYGEDV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242
                FL G    L +++A+ M QA  + ++E A  +RD+++ L  +            +
Sbjct: 196 TNTLLFLEGRGEALIDRLAQRMEQAAQRLEFEKAARYRDQISNLRTVLAKQLVAGEQGDL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     N+AC+   F   GQ  G  +FF +   E   A +L  F+ QFY DK  P  
Sbjct: 256 DMIACAIKGNIACVHVVFVRNGQQIGDRSFFPRMQDEHDAAAVLGAFIPQFYLDKEIPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +LLS E  E  L E    +Q G  VKI+   +GE+ K +E A  NA  + T +L+++ + 
Sbjct: 316 LLLSHEIRELELFESVLGQQAGRPVKISWRLRGERAKRLELARANAECALTTRLASQQTI 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              L+  T+   L   PKR+E +D SH  G   V   VV    G +K+ YR+FN+    +
Sbjct: 376 ADRLRHLTEMLGLAEPPKRMECFDISHTQGDQTVASCVVFDRTGPLKSAYRRFNIEG--I 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A M   L RR+ ++   E                 PD++ +DGGKGQ+ AA   
Sbjct: 434 TGGDDYAAMAQALSRRYQRIRAGE--------------VEAPDILFIDGGKGQIHAAART 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           L +L VEN I II IAKGP R  GME  F     + +V+   +P    IQ +RDEAHRFA
Sbjct: 480 LAELGVEN-IRIIGIAKGPDRKPGMETLFQTGCSDPIVVKPDNPGSLLIQHIRDEAHRFA 538

Query: 542 ITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR+RR K    SPL  I G+GP R++ LL+ FG ++ ISR+  E L+S+EGI++++A
Sbjct: 539 ITGHRQRRAKTVTRSPLQAIAGLGPKRRQRLLRQFGGLRQISRADVEALSSVEGINRQLA 598

Query: 601 CKIYNHFHKNTS 612
            +IY+ FH + +
Sbjct: 599 QRIYDLFHDHGA 610


>gi|302390002|ref|YP_003825823.1| Excinuclease ABC subunit C [Thermosediminibacter oceani DSM 16646]
 gi|302200630|gb|ADL08200.1| Excinuclease ABC subunit C [Thermosediminibacter oceani DSM 16646]
          Length = 606

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/618 (34%), Positives = 340/618 (55%), Gaps = 31/618 (5%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTV 62
           E  PE PGVY M D  G+V+YVGKA +L+ R++SY    ++   +++ M+S I++I + V
Sbjct: 8   ESFPEKPGVYIMKDKNGKVIYVGKAVSLKNRVRSYFKAGDSLPPKVSSMVSHIDDIEYIV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +EVEAL+LE N+IK  KP++NILL+DDK +PYI IT     P +   R        YF
Sbjct: 68  TDSEVEALILECNLIKFYKPKYNILLKDDKQYPYIKITLNEPFPRIEVVRKIKKDGARYF 127

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKY 180
           GP+ +  A+ + I+ L++ F +RSC   + R   + RPCL + I RC  PC G +  E+Y
Sbjct: 128 GPYVNAGAMREAIDVLRKIFPVRSCKKDLSRVPLKERPCLNYHINRCLAPCQGNLQKEEY 187

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E +     FL G    L   +   M QA    D+E+A ++R+++ AL  +      +  
Sbjct: 188 GELIKNVVMFLEGRQEALLNHLREKMEQAAQSLDFETAAVYRNQIQALQKLLEKQKIVST 247

Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
            M   D  ++    + AC+   F   G+      F LK    +   +IL+ F++QFY   
Sbjct: 248 DMVDQDVIAMARGFDTACVMVFFVREGKLTEREPFILKNTDGAERKEILTSFIKQFYDTA 307

Query: 298 P-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P+ I+L EE ++   +E     + G KVKIT+PK+GEK+++ E    NA     +  
Sbjct: 308 SFIPKEIILEEEIDDRDTIESWLSGKKGSKVKITIPKRGEKKQLAEMVAENARAYLEQRE 367

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
           + +    I +Q  +++      L  IP+RIE +D S+  G  +V  MVV  E    K  Y
Sbjct: 368 SAEERERIRNQKAMEELKISLGLEDIPRRIEAFDISNTQGSESVASMVVFEEGIPKKEDY 427

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RKF +    V+  +D   M+  + RRF + ++ +E            F  +PD++++DGG
Sbjct: 428 RKFRIKT--VEGPNDFESMKEAVYRRFKRGLEGDE-----------KFRDFPDLLVIDGG 474

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQL  A+  L++LN++  I  I +AK  +       F   + E L+L      LY +QR
Sbjct: 475 KGQLRYAREALRELNLD-YIPTIGLAKEFEH-----IFIEGRDEPLILPRDSQALYLLQR 528

Query: 533 LRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDEAHRFA+T HRK R ++   S L++I GIG  R++ LL++FG+++ I +++PE L+ 
Sbjct: 529 VRDEAHRFAVTYHRKLRTRRNLKSVLEDIPGIGEARRKALLKAFGSLEAIKKATPEELSK 588

Query: 592 IEGISKKIACKIYNHFHK 609
           + G++KK A  +Y +FHK
Sbjct: 589 VPGMNKKAAVAVYEYFHK 606


>gi|170722539|ref|YP_001750227.1| excinuclease ABC subunit C [Pseudomonas putida W619]
 gi|229557935|sp|B1JB85|UVRC_PSEPW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|169760542|gb|ACA73858.1| excinuclease ABC, C subunit [Pseudomonas putida W619]
          Length = 607

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/610 (34%), Positives = 336/610 (55%), Gaps = 25/610 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   R+LYVGKA NL+KR+ SY        +   ++ +I  +  T+T  E 
Sbjct: 16  ARPGVYRMFDSETRLLYVGKAKNLKKRLASYFRKTGLAPKTAALVGRIAQVETTITANET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N+IK+ +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S
Sbjct: 76  EALLLEQNLIKQWRPPYNILLRDDKSYPYVFLSDGQ-FPRLGIHRGAKKAKGRYFGPYPS 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPC G + +E+Y E V  +
Sbjct: 135 AGAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCVGLVDAEEYAEDVRHS 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCF 245
             FL G +  L  ++   M +A +  ++E A   RD++A L  +Q+          +D  
Sbjct: 195 VMFLEGRSQQLGNELNAEMEKAAMALNFEKAAELRDQIALLRRVQDQQYMEGGSGDVDVV 254

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPEN 302
           + + N   AC+       G+  G+  FF +   E   A++++ FL Q+Y        P  
Sbjct: 255 AAFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGE 314

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ++++   E+ + +  +     G ++ I+   +G + +  + A+ NA ++   +L+     
Sbjct: 315 LIVNVVHEDFAAISEALQTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHM 374

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L  +P+R+E YD SH  G + V   VV G  G +K+ YR+FN+    V
Sbjct: 375 AARFEALAEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPLKSDYRRFNIEG--V 432

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A M   L RR+ ++   E  L              PDV+++DGGKGQL+ A+ V
Sbjct: 433 TAGDDYAAMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMAREV 478

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541
           +++L   + +T++ +AKG  R AG E  ++        L   +P L+ IQ++RDEAHRFA
Sbjct: 479 MQELAFTD-LTLLGVAKGVTRKAGFETLYLNDVAHEFTLKGDNPALHLIQQIRDEAHRFA 537

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR RR KA   S L+++ G+GP R+R LL+ FG ++ ++R+S + +A   GISKK+A
Sbjct: 538 ITGHRARRGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLA 597

Query: 601 CKIYNHFHKN 610
             IY   H  
Sbjct: 598 ESIYASLHSE 607


>gi|126730491|ref|ZP_01746302.1| excinuclease ABC subunit C [Sagittula stellata E-37]
 gi|126709224|gb|EBA08279.1| excinuclease ABC subunit C [Sagittula stellata E-37]
          Length = 629

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 268/606 (44%), Positives = 378/606 (62%), Gaps = 15/606 (2%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+MLD   RVLYVGKA NL+ R+ +Y   N H+ RI  MI +  ++ F  T TE 
Sbjct: 33  TSPGVYRMLDDHSRVLYVGKARNLKARVSNYARLNGHSRRIERMIRETASMMFLTTRTET 92

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N+IK+LKP+FN+LLRDDKSFP I++T+ H  P + KHR + + +G YFGPFAS
Sbjct: 93  EALLLEQNLIKQLKPKFNVLLRDDKSFPNIIVTN-HAFPQIKKHRGAKSEKGQYFGPFAS 151

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV + +N LQ+ F LR+C DS F  RTRPCLL QIKRCS PC G+IS E Y   V +A
Sbjct: 152 AGAVNRVLNQLQKAFLLRNCTDSQFEGRTRPCLLHQIKRCSAPCVGKISEEDYAASVRDA 211

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244
            ++LSG +  ++EK+A +M  A+   ++E A   RDR+ AL+ +Q             D 
Sbjct: 212 ARYLSGKSTEIQEKLAADMMDASEAMEFERAAALRDRIRALTQVQTAQGINPQTTAEADV 271

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
            +LY     AC+Q  F    QN G   F+ +   +   A+++  FL QFY  K     +L
Sbjct: 272 IALYMENGQACVQVFFIRANQNWGNKDFYPRVGDDVGPAEVMEAFLGQFYDQKEPARLLL 331

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           LS   E+  L+  +   + G KV+I+VP++GEK +++E AL NA  S  +K+S   +   
Sbjct: 332 LSHAIEDEDLMCQALSDKLGRKVEISVPQRGEKAELVEGALRNAKESLGRKMSETATQAK 391

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
           +L+   + F L   P+RIE+YDNSHI G +AVG M+V G +GF+KNQYRKFN+  +D+  
Sbjct: 392 LLRGLAEAFGLDGPPQRIEVYDNSHIQGTNAVGAMIVSGPDGFMKNQYRKFNIKGDDLVP 451

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD  MM+ VL RR  +L K++          + S   WPD++++DGG GQ+SA   +++
Sbjct: 452 GDDFGMMKEVLNRRLVRLKKDD---------PDRSKGLWPDLMLIDGGAGQVSAVAEIMR 502

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +  VE+ +  + +AKG  R  G E+F      A  L   DP+LYF+QRLRDEAHRFAI T
Sbjct: 503 EQGVED-VPFVGVAKGVDRDHGKEEFHRVGERAFALRHNDPVLYFVQRLRDEAHRFAIGT 561

Query: 545 HRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR +R KA   +PLDE+ G+G  RKR LLQ FG+ K +SR++   L +++G+S+ +A +I
Sbjct: 562 HRAKRAKAQMANPLDEVQGVGAARKRALLQHFGSAKAVSRANLADLKAVDGVSEALAERI 621

Query: 604 YNHFHK 609
           Y  FH+
Sbjct: 622 YAFFHE 627


>gi|119367679|sp|Q3SPL2|UVRC_NITWN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 689

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 291/606 (48%), Positives = 384/606 (63%), Gaps = 6/606 (0%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+M++ A  VLYVGKA N++KR+ SY        RI  MI+    +    T TE
Sbjct: 82  PTSPGVYRMMNAARDVLYVGKAKNVRKRLSSYARPTGQVMRIARMIAATAAVEIVSTGTE 141

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT  H  P L KHR + +  G YFGPFA
Sbjct: 142 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQLLKHRGAQSRPGRYFGPFA 201

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  AV +TI +LQR F +RSC DS F  RTRPCLL+QIKRC+GPCTGEI    Y   V E
Sbjct: 202 SAGAVGRTITALQRAFLVRSCTDSFFESRTRPCLLYQIKRCAGPCTGEIDFPGYTALVRE 261

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A  FLSG +  +KE +AR M QA     +E A ++RDRLAALS IQ+            D
Sbjct: 262 ATDFLSGRSRAVKEDLARAMEQAAADLAFERAALYRDRLAALSAIQSQQGINPRTVEEAD 321

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F+++      C++  FF  GQN G   +F + +   T  ++L  FL QFY DKP P  I
Sbjct: 322 VFAIHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLGSFLAQFYDDKPPPRLI 381

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           LLS   EE+ LL  +   + G KV ++ P++GEK++++  AL NA  +  +KL+   +  
Sbjct: 382 LLSHRIEESELLAHALSIKAGCKVVVSTPQRGEKKELVAHALTNAREALGRKLADTATQS 441

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
            +L+       LP  P+R+E+YDNSHI G +AVG M+V G  GF+KNQYRKFN+    + 
Sbjct: 442 RLLQGLAALLGLPQPPQRVEVYDNSHIQGANAVGAMIVAGPEGFLKNQYRKFNIRSESLT 501

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD AMMR VLERRF +L+  ++  +     ++ S P WPD+VI+DGG GQL+AA+GV+
Sbjct: 502 PGDDYAMMREVLERRFKRLLT-QKAADSRAAAEQDSAPQWPDLVIIDGGLGQLNAARGVV 560

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
             L +  R++++++AKGP R AG E  F+    A+ L  RDP+LYFIQRLRDEAHRF I 
Sbjct: 561 DALGLS-RVSLMAVAKGPDRDAGRETLFLPDRPAIKLEPRDPVLYFIQRLRDEAHRFVIG 619

Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           +HRK R+K      L E+ GIGP RKR LL  FGT+K I R+S   L  + GIS + A +
Sbjct: 620 SHRKLRRKDIREAGLQEVPGIGPARKRALLHHFGTLKEIERASLADLGKVPGISAESARR 679

Query: 603 IYNHFH 608
           I++ FH
Sbjct: 680 IFDFFH 685


>gi|323138227|ref|ZP_08073299.1| excinuclease ABC, C subunit [Methylocystis sp. ATCC 49242]
 gi|322396479|gb|EFX99008.1| excinuclease ABC, C subunit [Methylocystis sp. ATCC 49242]
          Length = 662

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 284/612 (46%), Positives = 391/612 (63%), Gaps = 10/612 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +  P  PGVY+M+   G VLYVGKA N++KR+ SY     H +RI  MIS   ++ F   
Sbjct: 57  KHAPNSPGVYRMIAENGEVLYVGKAKNVRKRVASYTRLAGHVNRIARMISATASMMFISV 116

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE +ALLLEAN+IK+LKPRFN+L+RDDKSFPYILI   H+ P + KHR +   +G YFG
Sbjct: 117 ETETDALLLEANLIKQLKPRFNVLMRDDKSFPYILIAKDHEAPQITKHRGARVRKGQYFG 176

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFASV AV + +N+L+R F LRSC+ S + +RTRPCLL+QIKRC+GPCTGEIS E Y E 
Sbjct: 177 PFASVWAVNRALNALERAFLLRSCSQSFYDNRTRPCLLYQIKRCAGPCTGEISIEDYKEL 236

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EA  FLSG + +++E +AR M  A  + ++E A   RDR++ALS +Q           
Sbjct: 237 VREACDFLSGKSRSVREHLAREMTDAAERLEFERAARLRDRISALSAVQGAQGVNPRTIE 296

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++  +    CI+  FF   QN G  ++F + D+  T A++L  FL QFY + P  
Sbjct: 297 EADVFAIAKDAGRFCIEAFFFRAFQNWGNRSYFPRADASLTEAEVLDAFLAQFYDEHPSA 356

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +L+S   E+++LLE +   +   +V++  P++GEKR++++ AL NA ++  +KL+ + 
Sbjct: 357 PLVLISHAIEDSALLEEALTAKTRRRVEVIAPQRGEKRELVDHALTNARQALGRKLAEDA 416

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S Q +L    + F LP  P+RIE+YDNSH  G  A+G MVV G +GF+K  YR FN+  +
Sbjct: 417 SQQRLLAAIGQVFRLPETPRRIEVYDNSHTGGAQAIGAMVVAGPSGFMKAHYRTFNIRNS 476

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           ++   DD AMMR VL RRF++L K  E           +FPS PD+V++DGG+GQ  AA+
Sbjct: 477 EITPGDDYAMMREVLTRRFARLSKETEK-----DSDPDAFPSKPDLVLIDGGRGQFEAAR 531

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
             + ++ VE  + + SIAKG  R AG E FFV+  E   L   DP LYF+QRLRDEAHRF
Sbjct: 532 AAMLEVGVEG-VALASIAKGRDRDAGRETFFVEGREPFRLPPHDPALYFVQRLRDEAHRF 590

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI THR RRKK    +PLDEI GIGP RKR LL +FG+ K +SR++   L    GI+K  
Sbjct: 591 AIGTHRARRKKEFTKNPLDEIPGIGPSRKRALLLAFGSAKGVSRAALSDLEKTPGINKAT 650

Query: 600 ACKIYNHFHKNT 611
           A  +++HF +  
Sbjct: 651 ARLVFDHFQRGD 662


>gi|75676710|ref|YP_319131.1| excinuclease ABC subunit C [Nitrobacter winogradskyi Nb-255]
 gi|74421580|gb|ABA05779.1| Excinuclease ABC subunit C [Nitrobacter winogradskyi Nb-255]
          Length = 666

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 291/606 (48%), Positives = 384/606 (63%), Gaps = 6/606 (0%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+M++ A  VLYVGKA N++KR+ SY        RI  MI+    +    T TE
Sbjct: 59  PTSPGVYRMMNAARDVLYVGKAKNVRKRLSSYARPTGQVMRIARMIAATAAVEIVSTGTE 118

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEAN+IK+L+PRFN+ LRDDKSFPYILIT  H  P L KHR + +  G YFGPFA
Sbjct: 119 TEALLLEANLIKQLRPRFNVQLRDDKSFPYILITGDHWAPQLLKHRGAQSRPGRYFGPFA 178

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  AV +TI +LQR F +RSC DS F  RTRPCLL+QIKRC+GPCTGEI    Y   V E
Sbjct: 179 SAGAVGRTITALQRAFLVRSCTDSFFESRTRPCLLYQIKRCAGPCTGEIDFPGYTALVRE 238

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A  FLSG +  +KE +AR M QA     +E A ++RDRLAALS IQ+            D
Sbjct: 239 ATDFLSGRSRAVKEDLARAMEQAAADLAFERAALYRDRLAALSAIQSQQGINPRTVEEAD 298

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F+++      C++  FF  GQN G   +F + +   T  ++L  FL QFY DKP P  I
Sbjct: 299 VFAIHQEGGYFCVEVFFFRTGQNWGNRAYFPRAEKSFTPEEVLGSFLAQFYDDKPPPRLI 358

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           LLS   EE+ LL  +   + G KV ++ P++GEK++++  AL NA  +  +KL+   +  
Sbjct: 359 LLSHRIEESELLAHALSIKAGCKVVVSTPQRGEKKELVAHALTNAREALGRKLADTATQS 418

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
            +L+       LP  P+R+E+YDNSHI G +AVG M+V G  GF+KNQYRKFN+    + 
Sbjct: 419 RLLQGLAALLGLPQPPQRVEVYDNSHIQGANAVGAMIVAGPEGFLKNQYRKFNIRSESLT 478

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD AMMR VLERRF +L+  ++  +     ++ S P WPD+VI+DGG GQL+AA+GV+
Sbjct: 479 PGDDYAMMREVLERRFKRLLT-QKAADSRAAAEQDSAPQWPDLVIIDGGLGQLNAARGVV 537

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
             L +  R++++++AKGP R AG E  F+    A+ L  RDP+LYFIQRLRDEAHRF I 
Sbjct: 538 DALGLS-RVSLMAVAKGPDRDAGRETLFLPDRPAIKLEPRDPVLYFIQRLRDEAHRFVIG 596

Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           +HRK R+K      L E+ GIGP RKR LL  FGT+K I R+S   L  + GIS + A +
Sbjct: 597 SHRKLRRKDIREAGLQEVPGIGPARKRALLHHFGTLKEIERASLADLGKVPGISAESARR 656

Query: 603 IYNHFH 608
           I++ FH
Sbjct: 657 IFDFFH 662


>gi|53804040|ref|YP_114124.1| excinuclease ABC subunit C [Methylococcus capsulatus str. Bath]
 gi|53757801|gb|AAU92092.1| excinuclease ABC, C subunit [Methylococcus capsulatus str. Bath]
          Length = 626

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/612 (39%), Positives = 345/612 (56%), Gaps = 21/612 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+MLD  G V+YVGKA NL+KR+ S+      + +   M++++  I  TVT 
Sbjct: 32  TLTGAPGVYKMLDRNGEVIYVGKAKNLKKRVASHFAQRGSSPKQNAMVARVQAIEVTVTR 91

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE  +IKR KPR+NI LRDDKS+PYI ++   + P L  HR S    G +FGP
Sbjct: 92  TEGEALLLENQLIKRHKPRYNINLRDDKSYPYIYVSTHQEFPRLAFHRGSRARPGRFFGP 151

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV  ++ +LQ+ F +R C DS F +RTRPCL +QI+RC+GPC G + +E Y E V
Sbjct: 152 FPSAAAVRDSLKTLQKIFPVRQCEDSYFVNRTRPCLQYQIERCTGPCVGLVGAETYGEDV 211

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242
                FL G    L +++A+ M QA  + ++E A  +RD+++ L  +            +
Sbjct: 212 TNTLLFLEGRGEALIDRLAQRMEQAAQRLEFEKAARYRDQISNLRTVLAKQLVAGEQGDL 271

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     N+AC+   F   GQ  G  +FF +   E   A +L  F+ QFY DK  P  
Sbjct: 272 DMIACAIKGNIACVHVVFVRNGQQIGDRSFFPRMQDEHDAAAVLGAFIPQFYLDKEIPRE 331

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +LLS E  E  L E    +Q G  VKI+   +GE+ K +E A  NA  + T +L+++ + 
Sbjct: 332 LLLSHEIRELELFESVLGQQAGRPVKISWRLRGERAKRLELARANAECALTTRLASQQTI 391

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              L+  T+   L   PKR+E +D SH  G   V   VV    G +K+ YR+FN+    +
Sbjct: 392 ADRLRHLTEMLGLAEPPKRMECFDISHTQGDQTVASCVVFDRTGPLKSAYRRFNIEG--I 449

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A M   L RR+ ++   E                 PD++ +DGGKGQ+ AA   
Sbjct: 450 TGGDDYAAMAQALSRRYQRIRAGE--------------VEAPDILFIDGGKGQIHAAART 495

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           L +L VEN I II IAKGP R  GME  F     + +V+   +P    IQ +RDEAHRFA
Sbjct: 496 LAELGVEN-IRIIGIAKGPDRKPGMETLFQTGCSDPIVVKPDNPGSLLIQHIRDEAHRFA 554

Query: 542 ITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR+RR K    SPL  I G+GP R++ LL+ FG ++ ISR+  E L+S+EGI++++A
Sbjct: 555 ITGHRQRRAKTVTRSPLQAIAGLGPKRRQRLLRQFGGLRQISRADVEALSSVEGINRQLA 614

Query: 601 CKIYNHFHKNTS 612
            +IY+ FH + +
Sbjct: 615 QRIYDLFHDHGA 626


>gi|226941543|ref|YP_002796617.1| excinuclease ABC subunit C [Laribacter hongkongensis HLHK9]
 gi|226716470|gb|ACO75608.1| UvrABC system protein C [Laribacter hongkongensis HLHK9]
          Length = 606

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 226/610 (37%), Positives = 333/610 (54%), Gaps = 27/610 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+MLD  G+VLYVGKA +L++R+  Y   ++ + RI  M+ QI  I  TV  
Sbjct: 18  SLPALPGVYRMLDTEGQVLYVGKAVDLKRRVSQYFQKSDLSPRIELMVRQIAAIETTVVR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+IK L P++NIL RDDKS+PY++++ +H  P L  +R +   Q  YFGP
Sbjct: 78  SEAEALVLENNLIKSLAPKYNILFRDDKSYPYLMLS-RHAYPQLAYYRGALDHQHQYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  AV + I  LQR F LR+C DSVF +R+RPCLL+QIKRCS PC G +  + Y   V
Sbjct: 137 YPNGYAVREAIAILQRVFRLRTCEDSVFANRSRPCLLYQIKRCSAPCVGLVGEKDYAADV 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---- 240
             A +FLSG  H L E + R+M  A+   ++E A   RD++ AL+ +Q     +      
Sbjct: 197 RRAAEFLSGRQHALTEDMTRDMLAASEALEFEKAAELRDQIQALARVQERQFVMSTSSDI 256

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +     L C+       G   G   FF     +  ++ +L  FL Q Y+ +P P
Sbjct: 257 DCDVVGIAREGGLVCVNLVMIRGGSQLGDKRFFPDNADDLDDSGVLEAFLLQHYSHQPAP 316

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             + +S       ++  +       +V +     GE+R  +E A  NA  S  QKL++  
Sbjct: 317 GTVYVSTAVNP--VMGEALSAIAERRVSVISHTLGERRIWVEMAEKNARLSIQQKLASRS 374

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           + +M +    +      +  R+E +D SH MG + V   VV        ++YR FN+  +
Sbjct: 375 TQEMRIAALAEALGYDQVE-RLECFDISHTMGEATVASCVVYDHGQMRPSEYRHFNI--S 431

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A MR  L RR+ +L   E  L              PD++++DGGKGQ+  A 
Sbjct: 432 GITPGDDYAAMREALTRRYQKLAAGEGKL--------------PDILLIDGGKGQVGVAV 477

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHR 539
            VL +L + N + I+ +AKG  R  G+E    V++ + L L    P L+ IQ +RDEAHR
Sbjct: 478 EVLAELGL-NELPIVGVAKGEARKPGLETLVLVREQKTLQLPADHPALHLIQTVRDEAHR 536

Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR RR KA   S L+EI G+GP R++ LL  FG +K ++ +S E +A +EGI++ 
Sbjct: 537 FAITGHRARRAKARTTSTLEEIPGVGPKRRQRLLTRFGGLKGLAAASVEDIALVEGINRV 596

Query: 599 IACKIYNHFH 608
           +A KIY   H
Sbjct: 597 LAEKIYAALH 606


>gi|78485489|ref|YP_391414.1| excinuclease ABC, C subunit [Thiomicrospira crunogena XCL-2]
 gi|119367857|sp|Q31GI3|UVRC_THICR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78363775|gb|ABB41740.1| Excinuclease ABC subunit C [Thiomicrospira crunogena XCL-2]
          Length = 613

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 225/615 (36%), Positives = 339/615 (55%), Gaps = 24/615 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + + E PGVY M D +G+++YVGKA NL++R+ SY    +   +   ++SQ+ +I  TV
Sbjct: 15  LKHLTERPGVYLMYDASGQIIYVGKAKNLKRRVSSYFKKRHEEIKTETLVSQVASIEVTV 74

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE  +IKR KPR+NIL RDDKS+PYI ++   K P+L  HR +    G YF
Sbjct: 75  TDTESEALILENTLIKRHKPRYNILFRDDKSYPYIFVSTGKKFPSLSYHRGAKRKVGRYF 134

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+++LQ+ F +R C +SVF HR+RPCL +QIKRCSGPC    ++  +Y 
Sbjct: 135 GPFPNASAVHQTLHALQKIFPVRQCTESVFNHRSRPCLQYQIKRCSGPCVEGLVTEAEYN 194

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E V     FL G + ++ E +   M QA+ + ++E A ++RD+++AL  IQ+ +      
Sbjct: 195 EDVQHTIAFLEGKSFDVIESLGHKMQQASDEFEFEKAALYRDKISALRAIQSQHLINQPG 254

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES-TNAQILSYFLRQFYTDK 297
               D  +L    N  C+    +  G   G+  +F K   +S    +I+S F+ Q Y D 
Sbjct: 255 SKDTDVVALAEEANQVCVSIMMYRGGNLWGSQNYFPKIGGQSINPGEIISAFITQHYIDL 314

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
           P P+ IL+S+  E+ S LE    +Q   KV I        + +++ AL NA     Q+L+
Sbjct: 315 PIPQMILVSDVLEDKSSLETWLSEQKKAKVSIRKAVSQTHKGLMKLALTNAQSGLKQQLT 374

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + S    +K      AL   P  +E +D SH  G   V   VV  E     + YRKFN+
Sbjct: 375 QKASQAERVKSLQDVLALASPPNHMECFDISHTQGNQTVASCVVFNEGVPNTSAYRKFNI 434

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               ++  DD A M   + RR+S++ K                   PD++++DGGKGQL+
Sbjct: 435 EG--IQPGDDYAAMHQAITRRYSRVKKEG--------------LPLPDLIVIDGGKGQLN 478

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDE 536
            A  V K L ++N + ++S+AKG  R AG+E  +    E  + L   D  L+ +  +RDE
Sbjct: 479 KAIDVFKTLELDN-LPLVSVAKGEGRKAGLEILYTPFNEEGIDLEADDIALHLLNYIRDE 537

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT+HR RR+KA  +S L++I G+G   +  LL  FG +  +  ++   L  + GI
Sbjct: 538 AHRFAITSHRSRRQKAQTHSRLEDIPGVGAKTRHKLLTHFGGLTEVKNAAVSELQKVPGI 597

Query: 596 SKKIACKIYNHFHKN 610
           S +IA  IY+ FH  
Sbjct: 598 SARIAQTIYDFFHGE 612


>gi|83858529|ref|ZP_00952051.1| excinuclease ABC subunit C [Oceanicaulis alexandrii HTCC2633]
 gi|83853352|gb|EAP91204.1| excinuclease ABC subunit C [Oceanicaulis alexandrii HTCC2633]
          Length = 636

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 268/610 (43%), Positives = 381/610 (62%), Gaps = 16/610 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + + + PGVY+M    G VLYVGKA  L+ R+ +Y  S  HT+RI  MIS   ++ F +T
Sbjct: 39  KNLSQGPGVYRMYGEDGEVLYVGKAKKLKNRVSNYAKSGGHTNRIALMISLTRSMEFVLT 98

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRLKPRFNILLRDDKSFPYILI   H+   L KHR +   +G YFG
Sbjct: 99  RTETEALLLEANLIKRLKPRFNILLRDDKSFPYILIRRDHESAQLTKHRGARKAKGDYFG 158

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV  T+N+LQ+ F +R+C DSV+  RTRPC+L+QIKRC+GPC   +S   Y E 
Sbjct: 159 PFASPSAVNNTLNTLQKAFGIRTCTDSVYEGRTRPCMLYQIKRCAGPCVDLVSPSDYDEL 218

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240
           V EAK FLSG +++L++++   M  A+   D+E+A   RDR+ A++ + +  D   +   
Sbjct: 219 VREAKDFLSGRSNSLRQRLQDEMTAASENLDFETAAKLRDRIRAIAAVTSQQDVNPDGVE 278

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D  +L+      C+Q  FF  GQN G    + K + ++   ++LS F+ QFY DKP P
Sbjct: 279 DADVIALHQEGGKTCVQIFFFRAGQNWGNRALYPKHEQDAAPDEVLSAFIAQFYDDKPAP 338

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             IL S + ++  LL  +   + G+ V+I  PK+G K+ ++E A  NA  +  + L+   
Sbjct: 339 RLILTSSDPQQAELLAEALTLRAGHPVEIRTPKRGSKKALVEAAERNAKEALGRNLAESR 398

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L    + F L   P+RIE+YDNSHI G +A+G M+V G  GF K  YR+FN+  +
Sbjct: 399 SQAQLLDGVARVFGLEERPERIEVYDNSHIQGTNALGAMIVAGPEGFEKQSYRRFNMKGD 458

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D  T DD AMM+ ++ RRF++L K  E                PD++++DGGKGQLS+  
Sbjct: 459 DAATNDDFAMMQAMIRRRFTRLQKEREE-----------GAPVPDLILIDGGKGQLSSVM 507

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            V+++L V++       AKGP R AG E F++     + + M DP+LY++QR+RDEAHRF
Sbjct: 508 EVMEELGVDDVAVAAV-AKGPDRDAGREVFYMPGKPPIRMPMNDPVLYYLQRIRDEAHRF 566

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR +R K    +PLDEI+G+G  RK  LL+ FG+ K +SR++   L ++EG+S+ +
Sbjct: 567 AITGHRAKRAKQMRENPLDEIDGVGATRKSALLKHFGSAKAVSRANLADLEAVEGVSRAL 626

Query: 600 ACKIYNHFHK 609
           A KIY HFH+
Sbjct: 627 ARKIYEHFHE 636


>gi|329119770|ref|ZP_08248447.1| excinuclease ABC subunit C [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464115|gb|EGF10423.1| excinuclease ABC subunit C [Neisseria bacilliformis ATCC BAA-1200]
          Length = 647

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 224/617 (36%), Positives = 332/617 (53%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ QI +I  TV
Sbjct: 47  LKNLPNLPGVYRFFDSGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQIRHIETTV 106

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H  P +  +R +      YF
Sbjct: 107 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHAFPQMAYYRGTLKKPNQYF 165

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV  +I  LQ+ F LR+C D+VF +R RPCLL+QIKRC+ PC G I    Y +
Sbjct: 166 GPYPNGTAVRDSIQILQKVFMLRTCEDNVFANRDRPCLLYQIKRCTAPCVGHIGEADYRD 225

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----- 237
            V  A  FL+G    + + + R M QA    ++E A   RD++ AL  +Q+         
Sbjct: 226 SVRRAAAFLNGKTDGVIQDLQRKMQQAADNLEFEEAARCRDQIQALGIMQSSQFIDSKNP 285

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
              N +D  +L  +  L C+       G++ G  +FF    ++      +    F+ Q Y
Sbjct: 286 YNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDLKNDPDPQGQEYAEAFVAQHY 345

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+ I++S      SL E    + +G +++      GE++  +  A  NA  +  Q
Sbjct: 346 LGKAKPD-IIISNFPIPESLREALESE-HGRQIQFVNKTIGERKVWLNMAEQNAMIAIGQ 403

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +       Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 404 RRLQHTGQQQRISELAKILNMDADGLNRLECFDISHTQGEATIASCVVYDEQNIRPDQYR 463

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E                WPDVV++DGGK
Sbjct: 464 RYNITTA--KPGDDYAAMREVLTRRYGKMQQAE---------AAGETVKWPDVVLIDGGK 512

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 513 GQIGVAVAVWEELGLT--IPLVGIAKGPERKAGMEELILPFTGETFRLPPNSPALHLLQT 570

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ ++ +S E LA 
Sbjct: 571 VRDESHRFAITGHRKKRDKARITSSLSDIPGVGGKRRQALLTRFGGLRGVTAASKEDLAQ 630

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A KIY H H
Sbjct: 631 VEGISKALAEKIYEHLH 647


>gi|296134219|ref|YP_003641466.1| excinuclease ABC, C subunit [Thermincola sp. JR]
 gi|296032797|gb|ADG83565.1| excinuclease ABC, C subunit [Thermincola potens JR]
          Length = 619

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 204/618 (33%), Positives = 330/618 (53%), Gaps = 21/618 (3%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVTC 64
           +P+ PGVY M +  G ++YVGKA +L+ R++SY  S+  H+ ++  M++Q+ +  + +T 
Sbjct: 10  LPDKPGVYLMKNADGDIIYVGKAVSLKSRVRSYFQSSRAHSPKVRSMVAQVEDFEYILTD 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E+EAL+LE N+IK+ +PR+N+ L+DDKS+PY+ +T   + P L+  R        Y+GP
Sbjct: 70  SEIEALILECNLIKKHRPRYNVRLKDDKSYPYLKLTVDEEFPRLFMTRRVVRDGARYYGP 129

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  AV +T+  L++ F LRSC         RPCL + IK+C GPC  +IS + Y + V
Sbjct: 130 YTNAGAVHETLRVLKQVFPLRSCKKKNVDRNARPCLNYHIKKCLGPCNNQISVKDYRDMV 189

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNR 241
           +E   FL G    L ++I   M +A  + ++E A ++RD+  AL  I             
Sbjct: 190 NEIVLFLEGRQEELIKQIEAKMTKAAEQMEFERAALYRDQAKALRAIVEKQKVVVADLTD 249

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300
            D   L       C    F   G+  G   + L+   +   A+IL  F++Q+Y      P
Sbjct: 250 QDFIGLAREGEDCCASVFFVRSGKLLGREHYILEGVGDDPPAEILGDFIKQYYLQVEYVP 309

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + IL S    E SL+E    ++ G KV++ VP++G+K K++E    NA     +      
Sbjct: 310 KEILCSVRPAEISLIEKWLTERRGNKVQVKVPQRGDKAKLVELVEKNAREELARHRLEME 369

Query: 361 SHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             +      L    +   LP +P+RIE YD S+  G  +VG MVV  +     ++YR+F 
Sbjct: 370 KSRARTEGALLGLEEYLDLPRVPRRIECYDISNTQGRESVGSMVVFQDGEPKNSEYRRFK 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDGGKGQ 475
           +    V+  +D A M+ V+ RRF +  +  E +     +  +  F   PD+VI+DGGKGQ
Sbjct: 430 IKT--VEGPNDFASMQEVIGRRFGKAREEFEAIEEGMLEPAKAKFAKIPDLVIIDGGKGQ 487

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLR 534
           L+AA+ V+  L     I    +AK        E  F +   + +VL      LY +QR+R
Sbjct: 488 LNAAREVMINLG-YGFIPTFGLAKEE------ELLFAEDRTDPIVLPRNSESLYLLQRIR 540

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HR  R K +  S LD+I GIG  R++ ++Q F + + + ++S   +A +E
Sbjct: 541 DEAHRFAITYHRHLRGKHSLKSILDDIPGIGVKRRKAIIQHFRSFEKLLKASAAEIAEVE 600

Query: 594 GISKKIACKIYNHFHKNT 611
           GIS+ +A +++ + H + 
Sbjct: 601 GISEALAEQVWEYLHHHD 618


>gi|254293456|ref|YP_003059479.1| excinuclease ABC subunit C [Hirschia baltica ATCC 49814]
 gi|254041987|gb|ACT58782.1| excinuclease ABC, C subunit [Hirschia baltica ATCC 49814]
          Length = 655

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 264/612 (43%), Positives = 367/612 (59%), Gaps = 12/612 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P   GVY+M  I G +LYVGKA +L+ R+ +Y     HT RI  MIS   ++ F V
Sbjct: 51  LKHLPSKSGVYRMYGIDGDLLYVGKAKSLKNRVANYAKLGGHTQRIARMISLTRSMEFVV 110

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLEA++IK+LKPRFNILLRDDKSFPYILI   H  P + KHR +   +G YF
Sbjct: 111 TESETEALLLEASLIKKLKPRFNILLRDDKSFPYILIRRDHDAPQILKHRGAKKTKGEYF 170

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFAS  AV +T++ LQ+ F LR+C+DSV+  R+R C+  QIKRCS PC   IS + Y +
Sbjct: 171 GPFASGYAVNETLDILQKAFLLRTCSDSVYEGRSRACMQHQIKRCSAPCVDIISKKDYND 230

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239
              +A +FL+G  + L+E +A+ M  A+   ++E A I RDR+ AL+ ++          
Sbjct: 231 LADQAAQFLNGKVNTLQEDMAKEMEAASQDMEFEKAAILRDRIRALAAVRASQSINPANL 290

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           N  D F +       C+Q  FF  GQN G   ++ + D + T  +IL+ FL QFY ++P 
Sbjct: 291 NEADIFGIETKAGQTCVQAFFFRAGQNWGATAYYPRHDVDDTPEEILAAFLVQFYDNRPV 350

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  IL S E ++   +  +   +  YKV I  P +GEK   ++QA  NA  +  +KL+  
Sbjct: 351 PRLILTSVELDQAKFIAEALELRTDYKVYIHKPSRGEKLGFVKQAHTNAREALARKLAQT 410

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            S   IL    K F L   PKRIE+YDNSHI G +AVG M+V    GF K+ YRKFN+  
Sbjct: 411 QSQGKILSAVQKVFDLDEPPKRIEVYDNSHIQGSNAVGGMIVANSEGFDKSSYRKFNIKD 470

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            +++  DD  MMR V+ RRF++L K        P        +WPD+V++DGG GQLSA 
Sbjct: 471 TEIEPGDDYGMMREVMRRRFARLKKEAAGRETKPD-------TWPDLVLIDGGLGQLSAV 523

Query: 480 QGVLKKLNV-ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
              + ++    N + +I+IAKGP R+AG E+FF        L + DP LY++QRLRDEAH
Sbjct: 524 IEAIGEVGFGPNDLNLIAIAKGPDRNAGREQFFRPNRAPFQLPINDPALYYLQRLRDEAH 583

Query: 539 RFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           R+AI  HR +R      +PLDEI GIGP RK+ LL  FG+ K +S +  + L  ++G+S 
Sbjct: 584 RWAIGAHRAKRSADIVKNPLDEIGGIGPSRKKALLHHFGSAKGVSNAKLKDLEGVDGVSA 643

Query: 598 KIACKIYNHFHK 609
            +A KIY++F  
Sbjct: 644 ALAQKIYDYFQN 655


>gi|254428531|ref|ZP_05042238.1| excinuclease ABC, C subunit [Alcanivorax sp. DG881]
 gi|196194700|gb|EDX89659.1| excinuclease ABC, C subunit [Alcanivorax sp. DG881]
          Length = 610

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/609 (36%), Positives = 334/609 (54%), Gaps = 23/609 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+MLD  G VLYVGKA NLQ R+ SY   N  + +   ++ +I +I+ TVT +E 
Sbjct: 18  RKPGVYRMLDGDGGVLYVGKARNLQARLNSYFQKNVSSAKTRALVGRIRDIQTTVTGSEA 77

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE ++IK LKP +NILLRDDKS+PYI IT   + P +  HR +      YFGP+ S
Sbjct: 78  EALLLEQSLIKELKPPYNILLRDDKSYPYIRITSADRFPRVTFHRGTRRAGSQYFGPYPS 137

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV + ++ +++ F +R+C+DS FR+RTRPCL  QI RC+ PC G +S   Y   V  A
Sbjct: 138 GGAVREALSLIEKVFRVRNCSDSYFRNRTRPCLQHQINRCTAPCVGLVSEADYARQVKMA 197

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCF 245
             FL G +  + E+++ +M  A++  ++E A I RD+LAA+  +Q    +   +   D  
Sbjct: 198 ADFLDGRSREVVEQLSADMEAASVALEFEKAAILRDQLAAIQSVQQKQYAETGQGDLDVV 257

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPE 301
           ++     LA I+      G+  G  TF   T  E   ++IL  FL Q+Y     D   P+
Sbjct: 258 AIETRHGLAVIEVLMIRDGRILGHRTFRPDTRGEEDRSEILEAFLSQYYLGDREDPVKPQ 317

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILLS E      L+ +   Q+G KV++    + ++   I  A  NA +S   +L+    
Sbjct: 318 EILLSMEIPGADALQQALESQWGKKVRLAWRVRSDRAAWITMAQTNAQQSMAAELAAREH 377

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +                +RIE +D SH  G  AV   VV  + G  K +YR FN++P  
Sbjct: 378 MEARFLALETLLESSEPVRRIECFDISHTQGEKAVASCVVFDQQGARKQEYRHFNVNPA- 436

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   +   + RR+ +++K +                 PD++++DGGKGQ+     
Sbjct: 437 -AGGDDYEALEEAIRRRYQRVLKEQ--------------GRLPDLLLIDGGKGQMQRGWK 481

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           V+++L+++ R+ ++ I KGP R  G E  ++  G+ +V    D  L+ +Q++RDEAHRFA
Sbjct: 482 VIQELDLQARVRVMGIGKGPSRRPGFEALYLPCGKEMVPGPADSALHLLQQVRDEAHRFA 541

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           +T HR RR KA   S LDEI GIGP R++ LL  FG +K +  +S   LA + GI+ ++A
Sbjct: 542 LTGHRARRGKARKQSTLDEIPGIGPKRRKALLTHFGGLKQMRNASASELARVPGINAQMA 601

Query: 601 CKIYNHFHK 609
             +Y+ FH+
Sbjct: 602 QTLYDWFHQ 610


>gi|325198477|gb|ADY93933.1| excinuclease ABC, C subunit [Neisseria meningitidis G2136]
          Length = 628

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 224/617 (36%), Positives = 338/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N+IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRCS PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCSAPCVGHISEEDYHD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVREASTFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RCLQQSSQQHRIDELAKILNMNSDDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEQ 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|294675950|ref|YP_003576565.1| UvrABC system protein C [Rhodobacter capsulatus SB 1003]
 gi|294474770|gb|ADE84158.1| UvrABC system protein C [Rhodobacter capsulatus SB 1003]
          Length = 631

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 266/604 (44%), Positives = 372/604 (61%), Gaps = 14/604 (2%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+ML+ A  VLYVGKA NL+ R+ +Y  +  H+ RI  MIS+  ++ F  T TE E
Sbjct: 35  SPGVYRMLNAAQEVLYVGKARNLKARVSNYARTTGHSGRIARMISETTHMMFLTTRTETE 94

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK+LKPR+N+LLRDDKSFPYILI   H  P + KHR + T++G+YFGPFAS 
Sbjct: 95  ALLLEQNLIKQLKPRYNVLLRDDKSFPYILIAGDHPFPMIRKHRGARTVKGAYFGPFASA 154

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            AV +T+N L+R F LR+C+D++F  RTR CL +QIKRCSGPC G+IS + Y   V +A+
Sbjct: 155 SAVNRTLNHLERAFQLRNCSDAMFSSRTRACLQYQIKRCSGPCVGKISEDDYRRTVADAQ 214

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245
           +FL G + ++++ +A  M+ A+   +YE A   RDR+ AL+ +Q             D  
Sbjct: 215 RFLEGKSSSIQQDLAAEMSAASEAMEYERAAALRDRIGALTTVQQSQGINPRSVAEADVV 274

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           +++     AC+Q  F    Q+ G   F+ +T + +  A++L  FL QFY  K  P+ ILL
Sbjct: 275 AVHLEGGQACVQVFFIRAHQSWGNHDFYPRTGAGAEEAEVLEAFLAQFYDAKEPPKTILL 334

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           S E E+  L+      + G KV++ VPK+GEK +++E AL NA  S  +K+S   +   +
Sbjct: 335 SHEIEDADLMIDLLSTRAGRKVELAVPKRGEKAELVENALRNARESLGRKMSESAAQAKL 394

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L      F LP  P RIE+YDNSHI G  AVG M+V G  G +K+ YRKFN+   D+   
Sbjct: 395 LLGVAAAFGLPKPPDRIEVYDNSHIQGAHAVGGMIVAGPEGLMKSSYRKFNIKGEDLTPG 454

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD  MM+ VL RRF +L++ +          E     WPD++++DGG GQ+SA   ++  
Sbjct: 455 DDFGMMKEVLTRRFERLLRED---------PERKTDLWPDLLLIDGGAGQVSAVHEIMVA 505

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L V + I ++ +AKG  R  G E+F       + L  +DP+LY+IQRLRDEAHR+AI  H
Sbjct: 506 LGVAD-IAMVGVAKGIDRDLGKEEFHRIGHRPMALPRQDPVLYYIQRLRDEAHRWAIGAH 564

Query: 546 RKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R KA   +PLDEI GIG  RKR LL  FG+ K +SR+    L  + GIS  +A  I+
Sbjct: 565 RAKRAKATMANPLDEIPGIGATRKRALLAHFGSAKAVSRAGESDLMEVPGISAAMAETIW 624

Query: 605 NHFH 608
           N F+
Sbjct: 625 NFFN 628


>gi|302878760|ref|YP_003847324.1| excinuclease ABC, C subunit [Gallionella capsiferriformans ES-2]
 gi|302581549|gb|ADL55560.1| excinuclease ABC, C subunit [Gallionella capsiferriformans ES-2]
          Length = 601

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 227/609 (37%), Positives = 330/609 (54%), Gaps = 26/609 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+  D  G +LYVGKA  L+KR+ SY    N + RI  M+S I  I  TVT 
Sbjct: 14  SLPLLPGVYRYYDDKGALLYVGKAVQLKKRVSSYFQKTNVSPRIRLMVSHIARIETTVTR 73

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK LKPR+NIL RDDKS+PYI++T     P L  +R +   Q  YFGP
Sbjct: 74  SEAEALLLENNLIKSLKPRYNILFRDDKSYPYIVLTGDE-FPRLTYYRGTPNKQHQYFGP 132

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  A  +TI  LQR F +R+C DSV+ +RTRPCL  QI RC+ PC   IS+  Y   +
Sbjct: 133 YPNSYAARETIQLLQRIFRIRTCEDSVYNNRTRPCLQHQINRCTAPCVNLISALDYQADI 192

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY----N 240
           H A   L G +  ++  +   M+QA   + YE A + RD+L AL  +Q            
Sbjct: 193 HRAVLLLQGKHQEVERTLRDAMDQAAENQHYEQAAVLRDQLRALHTVQQKQFVESTGGTT 252

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D  +L  +  L C+       G++ G  +FF +      + +I+  F+ Q Y D   P
Sbjct: 253 DADIIALAQSGGLVCLNLAMVRGGRHLGDKSFFPEHAEGLASDEIVVAFIAQHYLDLAVP 312

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LL+ +  + +L      +Q G+ VKI+    GE+R+ +E A  NA  +  Q++  + 
Sbjct: 313 PILLLASDCTDKTL-AQLLSEQAGHAVKISTATTGERRQWLEMAQRNAELALGQRVMQQG 371

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
             Q  L    +   +P   +RIE +D SHIMG + V   VV        +QYR++N+  +
Sbjct: 372 GQQQRLDRLREWLEMP-TVQRIECFDISHIMGEATVASCVVYENLDMRSSQYRRYNI--S 428

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A MR  L RR+ ++   E               + PD+V++DGG GQL  A 
Sbjct: 429 GITPGDDYAAMRQALTRRYQKIRTGE--------------GARPDLVLIDGGLGQLHVAM 474

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            V+ +L ++  + ++ +AKG +R  GME+     G A  L   DP L+ IQ++RDEAHRF
Sbjct: 475 EVMAELALD--LALVGVAKGVERKPGMEQLIFPDGTARQLPADDPALHLIQQIRDEAHRF 532

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           A+  HR RR K    S L+EI G+G  R+R LL  FG ++ ++++S E L  +EGISK +
Sbjct: 533 AVAGHRARRGKTRTASSLEEIAGVGDKRRRSLLTHFGGLREVAQASVEQLCQVEGISKSL 592

Query: 600 ACKIYNHFH 608
           A  IY   H
Sbjct: 593 AQVIYQRLH 601


>gi|226944590|ref|YP_002799663.1| excinuclease ABC subunit C [Azotobacter vinelandii DJ]
 gi|259710334|sp|C1DIK7|UVRC_AZOVD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226719517|gb|ACO78688.1| excinuclease ABC, C subunit [Azotobacter vinelandii DJ]
          Length = 607

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 216/608 (35%), Positives = 333/608 (54%), Gaps = 25/608 (4%)

Query: 10  PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69
           PGVY+MLD  G +LYVGKA NL+KR+ SY  ++    +   ++++I  +  T+T  E EA
Sbjct: 18  PGVYRMLDAKGELLYVGKAKNLRKRLSSYFRTSGLAPKTAALVARIAQVETTITANETEA 77

Query: 70  LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVD 129
           LLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  
Sbjct: 78  LLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-AFPRLGIHRGAKQRKGRYFGPYPSAG 136

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
           ++ +++  LQ+ F +R C DS FR+RTRPCL  QI+RC  PC G +   +Y E V  +  
Sbjct: 137 SIRESLGLLQKAFQVRQCEDSYFRNRTRPCLQHQIRRCKAPCVGLVEPAEYAEDVRHSVM 196

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSL 247
           FL G ++ L E+++  M +A +  D+E A   RD++A L  +Q+          +D  + 
Sbjct: 197 FLEGRSNALAEELSAAMERAAVHLDFERAAELRDQIALLRRVQDQQSMEGGSGDVDVLAA 256

Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENIL 304
                 AC+       G+  G+  FF +   E     +L+ FL Q+Y   P    P  I+
Sbjct: 257 VVKPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGDVLAAFLGQYYLANPERDLPGEII 316

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           ++   E+   L ++  +Q   ++ I    +  + +  + A+ NA ++ + +L+       
Sbjct: 317 VNATHEDFPALVLALTEQRSRELHIRHRVRATRARWQQLAIANAEQALSARLAHRQHLAA 376

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
             +   +   L   P R+E +D SH  G + V   VV G  G +K +YR++N+    V  
Sbjct: 377 RFEALAEALDLDAPPLRMECFDISHSSGEATVASCVVFGPEGALKGEYRRYNIEG--VTA 434

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A M+  L RRF +L + E  L              PD++++DGGKGQL+ AQ VL+
Sbjct: 435 GDDYAAMQQALTRRFGKLREGEGKL--------------PDILLVDGGKGQLAIAQEVLR 480

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAIT 543
           +L V + I ++ +AKG  R  G+E  ++        L    P L+ IQ++RDEAHRFAIT
Sbjct: 481 ELAVPDLI-LLGVAKGVTRKPGLETLYLNDAVHEFTLPADSPALHLIQQIRDEAHRFAIT 539

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR RR KA   S L+E+ G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A  
Sbjct: 540 GHRARRGKARRTSSLEEVAGVGPKRRRELLKFFGGLQELSRASIDEIAKAPGISKKLADS 599

Query: 603 IYNHFHKN 610
           IY   H  
Sbjct: 600 IYAALHSE 607


>gi|326402663|ref|YP_004282744.1| UvrABC system protein C [Acidiphilium multivorum AIU301]
 gi|325049524|dbj|BAJ79862.1| UvrABC system protein C [Acidiphilium multivorum AIU301]
          Length = 634

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 263/611 (43%), Positives = 366/611 (59%), Gaps = 15/611 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MP  PGVY+MLD++G  LYVGKA +L+KR+ +Y        R+  M+S+ + +    T 
Sbjct: 22  SMPAAPGVYRMLDLSGNALYVGKARSLKKRVTTYTQIARLPERLRRMVSETSTVEIITTH 81

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IKRLKP++NILLRDDKS+P+++IT+    P L KHR +   +G Y+GP
Sbjct: 82  TEAEALLLEANLIKRLKPKYNILLRDDKSYPWLVITEDGDFPQLAKHRGAQVRKGRYWGP 141

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  +V +TI +LQR F LR+C D+VF +RTRPCLLFQIKRCS PC G I +E Y   V
Sbjct: 142 FASAWSVNQTIQALQRVFLLRTCPDTVFANRTRPCLLFQIKRCSAPCVGRIDAEAYGALV 201

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            +A  FLSG    ++  +A  M  A    +YE A   RDR+  L+HI+  +         
Sbjct: 202 RQASDFLSGRAGTVQHDLAAAMAAAADVMEYERAAAIRDRIRGLAHIRGGDVINPESVGD 261

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +++     +C+Q  F   G+N G  +FF      +T   +L  F+ QFY DK  P 
Sbjct: 262 ADVIAIHQAAGQSCLQVFFIRGGRNYGNRSFFPTQAQGATPGDVLGAFIAQFYDDKTPPP 321

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILLS    +  LL+ +   + GYKV++ VP++GEKR ++E A  NA  +  +KL+    
Sbjct: 322 LILLSNTVPQADLLKDALGLKAGYKVELAVPQRGEKRHVVEHAATNAREALERKLAESAG 381

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            + +L      F L   P+RIE+YDNSHIMG +A G M+V G  GF+K  YR+F++    
Sbjct: 382 QEKLLAATAALFGLEGNPERIEVYDNSHIMGTNAYGVMIVAGPEGFIKPAYRRFSIKGPI 441

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD AMMR VL RRF +    +               +WPD+V++DGG GQLSAA+ 
Sbjct: 442 TPG-DDFAMMREVLTRRFVRATAED---------PSREDGTWPDLVVIDGGAGQLSAARA 491

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           VL +L V + + +++IAKGP R AG E F +       L  RDP+LYF+QRLRDEAHR+A
Sbjct: 492 VLDELGVSD-VPLVAIAKGPDRDAGREWFHLPDRSPFQLPPRDPVLYFLQRLRDEAHRYA 550

Query: 542 ITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           ITTHR  R  K   S LD I GIG  RK+ LL  FG+ + + ++  + L ++ GI++  A
Sbjct: 551 ITTHRASRSRKITTSELDGIPGIGSARKKALLNHFGSARGVRQAGLKDLEAVSGINRTTA 610

Query: 601 CKIYNHFHKNT 611
             IY +F+ + 
Sbjct: 611 RLIYGYFNPDA 621


>gi|241761301|ref|ZP_04759389.1| excinuclease ABC, C subunit [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374208|gb|EER63705.1| excinuclease ABC, C subunit [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 664

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 264/617 (42%), Positives = 374/617 (60%), Gaps = 17/617 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M D  G +LYVGKA  L+ R+ +Y   +  + RI  M+SQ  ++    
Sbjct: 58  LKTLPLRPGVYRMYDSKGNILYVGKARALRNRVANYTQISGLSRRIQRMVSQTRSMTIVT 117

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQG 119
           T TE EALLLEA +IKR +P +NILLRDDKSFPYIL+ +    P    L +HR     +G
Sbjct: 118 TVTESEALLLEAQLIKRYRPPYNILLRDDKSFPYILLKEDGTFPQFPSLQRHRGVKRAKG 177

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GPFAS D+V  T+NSLQ+ F LRSC+DS FR+R RPCLL+QIKRCS PC G IS + 
Sbjct: 178 KYYGPFASADSVTLTLNSLQKLFLLRSCSDSFFRNRKRPCLLYQIKRCSAPCVGRISEDD 237

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y +   + + FLSG + ++++K+   M QA+   +YE A ++RDRL AL+ IQ+H     
Sbjct: 238 YRDLAVDTRDFLSGKSTHVQKKLVTAMEQASNDLNYELAAVYRDRLKALAFIQSHQSINS 297

Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D F +     LACIQ  F    QN G   ++L    E     ++  FL QFY D
Sbjct: 298 GNLRNADIFGIECRAGLACIQVFFIRNRQNWGHHAYYLNHIDEQPLEDVMQSFLGQFYED 357

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           K  P++IL +    + ++LE +   Q  Y+V+   P++G+ +K+++QA+ NA  +  ++L
Sbjct: 358 KIAPKDILTNYLPSDKNVLEDALSSQRDYRVRFYQPQRGDLKKLVDQAVRNAKEAIDRRL 417

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           +   + + +LK+    F L  IP RIE+YDNSHIMG + VG M+V G  GF +N YRKFN
Sbjct: 418 AEASTQKQLLKEMVNLFHLDKIPDRIEVYDNSHIMGSNMVGGMIVAGPEGFRRNSYRKFN 477

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD  MMR VL RRFS+L              ++S   WPD++++DGGKGQ+
Sbjct: 478 IKSPSINPGDDFEMMREVLTRRFSRL---------ERSDPDHSSSEWPDLLLIDGGKGQV 528

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
            A + +L K  + + I I+ I+KGP R+AG E F +  G    L     +L+++QRLRDE
Sbjct: 529 HAVKDILAKQGISD-IAIVGISKGPDRNAGREHFHLVDGSEYALPPNSGLLFYLQRLRDE 587

Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAI THR +R K    SPLDE+ GIGP RK+ LL  FGT + +  +S   L  + GI
Sbjct: 588 AHRFAIGTHRAKRAKNLTSSPLDEVPGIGPSRKKALLLHFGTARDVKNASLSELEKVNGI 647

Query: 596 SKKIACKIYNHFHKNTS 612
           S  IA +IY+ FH++ +
Sbjct: 648 SSAIARQIYDFFHRSPA 664


>gi|254419221|ref|ZP_05032945.1| excinuclease ABC, C subunit [Brevundimonas sp. BAL3]
 gi|196185398|gb|EDX80374.1| excinuclease ABC, C subunit [Brevundimonas sp. BAL3]
          Length = 621

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 275/613 (44%), Positives = 384/613 (62%), Gaps = 14/613 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            + + P+ PGVY+M    G  LYVGKA +L+KRI  Y     HT RI  M++Q  ++   
Sbjct: 19  EARRAPDKPGVYRMYGEDGSCLYVGKAKSLKKRIVQYAQGRFHTQRIGLMVAQTRSMELV 78

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +E EALLLE+N IK+LKPRFN+LLRDDKSF  ++I   H+ P + KHR + T  G Y
Sbjct: 79  VTASETEALLLESNFIKKLKPRFNVLLRDDKSFAELMIRSDHRAPQVKKHRGAHTTPGHY 138

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFAS  AV +T+N+LQ+ F LRSC+DSV+  RTRPC+L QIKRCS PCTG IS E Y 
Sbjct: 139 FGPFASTWAVNRTLNTLQKAFLLRSCSDSVYETRTRPCMLHQIKRCSAPCTGLISLEDYG 198

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E V EA++FL G +  +  ++++ M  A+   D+E A   RDR+ ALS I   N    + 
Sbjct: 199 ELVTEAEQFLRGKSRAVIGRLSQEMQAASDAMDFEQAARVRDRIRALSAISMENSVSADS 258

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+L+ +   AC+Q  F+  GQN G   +F + D   T+ +IL+ FL QFY DKP
Sbjct: 259 VAEGDVFALHSDGGQACVQVFFYRAGQNWGGRAYFPRVDKTDTDPEILAAFLGQFYEDKP 318

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  IL +    E  LLE +F  +   +++I  P +GEK  +++ AL NA  +  ++L+ 
Sbjct: 319 IPRLILSNVRPHELELLEEAFSMKADRRIEIVRPMRGEKLALVDHALTNAREALGRRLAE 378

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +   IL +  + F L   P+RIEIYDN+HI G +AVG MVV G +GF K+QYRKFN+ 
Sbjct: 379 SSAQGKILDEVCEAFGLETRPERIEIYDNAHIQGTNAVGGMVVAGPDGFQKSQYRKFNIR 438

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             D+   DD  MMR V+ RRF++L+K+EE      +         PD++++DGG GQL+ 
Sbjct: 439 GEDLTPGDDYGMMREVMRRRFARLVKDEEEGEDAVR---------PDLLLIDGGAGQLAE 489

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
              VL  L +++ I ++ +AKGP R AGMEKFF+      +L ++ P LY++QRLRDEAH
Sbjct: 490 VLAVLADLGLDD-IAVVGVAKGPDRDAGMEKFFMPGKPPFMLPLKSPALYYLQRLRDEAH 548

Query: 539 RFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFA   H KRR      +PLDEI G+GP RK+ LL +FG+ K +SR+S   L  I+GI++
Sbjct: 549 RFANGAHAKRRSMDIKKNPLDEIEGVGPGRKKALLHAFGSAKGVSRASVADLLKIDGINQ 608

Query: 598 KIACKIYNHFHKN 610
            +A +I+  F K+
Sbjct: 609 ALAERIHAFFRKS 621


>gi|260752833|ref|YP_003225726.1| excinuclease ABC subunit C [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552196|gb|ACV75142.1| excinuclease ABC, C subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 664

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 263/613 (42%), Positives = 371/613 (60%), Gaps = 17/613 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M D  G +LYVGKA  L+ R+ +Y   +  + RI  M+SQ  ++    
Sbjct: 58  LKTLPLRPGVYRMYDSKGNILYVGKARALRNRVANYTQVSGLSRRIQRMVSQTRSMTIVT 117

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQG 119
           T TE EALLLEA +IKR +P +NILLRDDKSFPYIL+ +    P    L +HR     +G
Sbjct: 118 TVTESEALLLEAQLIKRYRPPYNILLRDDKSFPYILLKEDGIFPQFPSLQRHRGVKRAKG 177

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GPFAS D+V  T+NSLQ+ F LRSC+DS FR+R RPCLL+QIKRCS PC G IS + 
Sbjct: 178 KYYGPFASADSVTLTLNSLQKLFLLRSCSDSFFRNRKRPCLLYQIKRCSAPCVGRISEDD 237

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y +   + + FL+G + ++++K+   M QA+   +YE A ++RDRL AL+ IQ+H     
Sbjct: 238 YRDLAVDTRDFLAGKSTHVQKKLVTAMEQASNDFNYELAAVYRDRLKALAFIQSHQSINS 297

Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D F +     LACIQ  F    QN G   ++L    E     ++  FL QFY D
Sbjct: 298 GNLRNADIFGIECRAGLACIQVFFIRNRQNWGHHAYYLNHIDEQPLEDVMQSFLGQFYED 357

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           K  P++IL +    + ++LE +   Q  Y+VK   P++G+ +K+++QA+ NA  +  ++L
Sbjct: 358 KIAPKDILTNYPPSDKNVLEDALSSQRDYQVKFYQPQRGDLKKLVDQAVRNAKEAIDRRL 417

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           +   + + +LK+    F L  IP RIE+YDNSHIMG + VG M+V G  GF +N YRKFN
Sbjct: 418 AEASTQKQLLKEMVNLFHLDKIPDRIEVYDNSHIMGSNMVGGMIVAGPEGFRRNSYRKFN 477

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD  MMR VL RRFS+L              ++S   WPD++++DGGKGQ+
Sbjct: 478 IKSPSINPGDDFEMMREVLTRRFSRL---------ERSDPDHSSSEWPDLLLIDGGKGQV 528

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
            A + +L +  + + I I+ I+KGP R+AG E F +  G    L     +L+++QRLRDE
Sbjct: 529 HAVKDILAEQGISD-IAIVGISKGPDRNAGREHFHLVDGSEYALPPNSGLLFYLQRLRDE 587

Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAI THR +R K    SPLDE+ GIGP RK+ LL  FGT + +  +S   L  + GI
Sbjct: 588 AHRFAIGTHRAKRAKNLTSSPLDEVPGIGPSRKKALLLHFGTARDVKNASLSELEKVNGI 647

Query: 596 SKKIACKIYNHFH 608
           S  IA +IY+ FH
Sbjct: 648 SSAIARQIYDFFH 660


>gi|225075863|ref|ZP_03719062.1| hypothetical protein NEIFLAOT_00886 [Neisseria flavescens
           NRL30031/H210]
 gi|224952809|gb|EEG34018.1| hypothetical protein NEIFLAOT_00886 [Neisseria flavescens
           NRL30031/H210]
          Length = 613

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 224/617 (36%), Positives = 336/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  D    VLYVGKA NL++R+ SY   N+H+ RI  M+ Q+++I  T+
Sbjct: 13  LKNLPNLPGVYRFFDEDNNVLYVGKAVNLKRRVSSYFQKNDHSPRIALMVKQVHHIETTI 72

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 73  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 131

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 132 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 191

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 192 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 251

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  + +L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 252 NNPNDIDLLALAVSDDLVCVHWVSIRGGRHVGDKSFFPDTKNDPDPNGQDYAEAFVAQHY 311

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 312 LGKSKPD--IIISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 369

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 370 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 429

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++++ E N              WPDVV++DGGK
Sbjct: 430 RYNITTA--KPGDDYAAMREVLTRRYGKMLEAEANGES---------VKWPDVVLIDGGK 478

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 479 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 536

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L EI GIG  R++ LL  FG ++ +  +S E L  
Sbjct: 537 VRDESHRFAITGHRKKRDKARVTSSLSEIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 596

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 597 VEGISKALAETIYEHLH 613


>gi|148259437|ref|YP_001233564.1| excinuclease ABC subunit C [Acidiphilium cryptum JF-5]
 gi|146401118|gb|ABQ29645.1| Excinuclease ABC subunit C [Acidiphilium cryptum JF-5]
          Length = 620

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 263/611 (43%), Positives = 367/611 (60%), Gaps = 15/611 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MP  PGVY+MLD++G  LYVGKA +L+KR+ +Y        R+  M+S+ + +    T 
Sbjct: 8   SMPAAPGVYRMLDLSGNALYVGKARSLKKRVTTYTQIARLPERLRRMVSETSTVEIITTH 67

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IKRLKP++NILLRDDKS+P+++IT+  + P L KHR +   +G Y+GP
Sbjct: 68  TEAEALLLEANLIKRLKPKYNILLRDDKSYPWLVITEDGEFPQLAKHRGAQVRKGRYWGP 127

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  +V +TI +LQR F LR+C D+VF +RTRPCLLFQIKRCS PC G I +E Y   V
Sbjct: 128 FASAWSVNQTIQALQRVFLLRTCPDTVFANRTRPCLLFQIKRCSAPCVGRIDAEAYGALV 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            +A  FLSG    ++  +A  M  A    +YE A   RDR+  L+HI+  +         
Sbjct: 188 RQASDFLSGRAGTVQHDLAAAMAAAADVMEYERAAAIRDRIRGLAHIRGGDVINPESVGD 247

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +++     +C+Q  F   G+N G  +FF      +T   +L  F+ QFY DK  P 
Sbjct: 248 ADVIAIHQAAGQSCLQVFFIRGGRNYGNRSFFPTQAQGATPGDVLGAFIAQFYDDKTPPP 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILLS    +  LL+ +   + GYKV++ VP++GEKR ++E A  NA  +  +KL+    
Sbjct: 308 LILLSNTVPQADLLKDALGLKAGYKVELAVPQRGEKRHVVEHAATNAREALERKLAESAG 367

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            + +L      F L   P+RIE+YDNSHIMG +A G M+V G  GF+K  YR+F++    
Sbjct: 368 QEKLLAATAALFGLEGNPERIEVYDNSHIMGTNAYGVMIVAGPEGFIKPAYRRFSIKGPI 427

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD AMMR VL RRF +    +               +WPD+V++DGG GQLSAA+ 
Sbjct: 428 TPG-DDFAMMREVLTRRFVRATAED---------SSREDGTWPDLVVIDGGAGQLSAARA 477

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           VL +L V + + +++IAKGP R AG E F +       L  RDP+LYF+QRLRDEAHR+A
Sbjct: 478 VLDELGVSD-VPLVAIAKGPDRDAGREWFHLPDRSPFQLPPRDPVLYFLQRLRDEAHRYA 536

Query: 542 ITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           ITTHR  R  K   S LD I GIG  RK+ LL  FG+ + + ++  + L ++ GI++  A
Sbjct: 537 ITTHRASRSRKITTSELDGIPGIGSARKKALLNHFGSARGVRQAGLKDLEAVSGINRTTA 596

Query: 601 CKIYNHFHKNT 611
             IY +F+ + 
Sbjct: 597 RLIYGYFNPDA 607


>gi|254282877|ref|ZP_04957845.1| excinuclease ABC, C subunit [gamma proteobacterium NOR51-B]
 gi|219679080|gb|EED35429.1| excinuclease ABC, C subunit [gamma proteobacterium NOR51-B]
          Length = 608

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 216/612 (35%), Positives = 331/612 (54%), Gaps = 23/612 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +++   PGVYQM+D+ G++LYVGKA NL+ R+ SY  ++  T +   ++ +I++I+ TV
Sbjct: 10  LKRLTTRPGVYQMMDVDGQLLYVGKAKNLKNRVTSYFRASGLTAKTMALVRRIHDIQVTV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE++ALLLE N+IK+ KP FNILL+DDKS+PY+ ++ + + P L  HR     +G YF
Sbjct: 70  TTTEIDALLLEHNLIKQHKPPFNILLKDDKSYPYVYLSSQDRWPRLSLHRGPKRRKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ S  AV  T++ LQ+ F +R C DS F +R+RPCL  QI RC+ PC G +S + Y E
Sbjct: 130 GPYPSAGAVRSTMHILQKVFKVRQCEDSYFSNRSRPCLQHQIGRCTAPCVGLVSDDAYAE 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240
            V  +  FL G +  L  ++A +M  A  + DYE A   RD+LA L  +Q        + 
Sbjct: 190 QVKNSVLFLKGRSQELMVRLADDMEAAAAELDYERAADLRDQLAQLQQVQASQGIEGEHG 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298
            +D  +       AC+Q  F    +  G+ +++     +     +L  F+ QFY    + 
Sbjct: 250 DLDIIAASARGGHACVQVLFVREARVLGSRSYYPPIKLDEEEGAVLEAFIPQFYLSGRQT 309

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  +L+S   E+  +L  +   Q   +V I    +  + + ++ A+  A  + T  LS 
Sbjct: 310 IPREVLVSTPLEDAEILAEALSVQSERRVTIRHRVREARARWLQLAVQTAENNLTSHLSG 369

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           + +     +    +  L   P R+E +D SH  G + V   VV   NG  K  YR+FN+ 
Sbjct: 370 KQTMAGRFEALRLQLQLDEPPARMECFDISHSSGEATVASCVVFDANGANKADYRRFNI- 428

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            + ++  DD A M   L RR+ +++  E  L              PD++ +DGGKGQ+S 
Sbjct: 429 -DGIEPGDDYAAMHQALSRRYRRIVSGEGKL--------------PDILFIDGGKGQVSQ 473

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEA 537
           A  VL +L +   + +I +AKG  R AG E       E   VL   +P L+ IQ++RDE+
Sbjct: 474 AMSVLSELEITT-VRVIGVAKGTTRKAGFETLIDGDTERETVLRGDNPALHLIQQIRDES 532

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR RR KA   S L+ I G+G  R+R LL+ FG+ K +  +S   L  + GI+
Sbjct: 533 HRFAITGHRARRGKARNTSTLESIPGVGSKRRRELLRHFGSAKGVENASITELRKVSGIN 592

Query: 597 KKIACKIYNHFH 608
             +A  IY+  H
Sbjct: 593 ANLAQTIYDTLH 604


>gi|319410592|emb|CBY90961.1| UvrABC system protein C (UvrC protein; excinuclease ABC subunit C)
           [Neisseria meningitidis WUE 2594]
          Length = 628

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 218/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N+IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  + C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSNQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPD V++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 612 VEGISKALAETIYEHLH 628


>gi|182678685|ref|YP_001832831.1| excinuclease ABC, C subunit [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182634568|gb|ACB95342.1| excinuclease ABC, C subunit [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 692

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 291/618 (47%), Positives = 398/618 (64%), Gaps = 13/618 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +  P  PGVY+M+  +G VLYVGKA +++KRI +Y+    HT+RI  MIS   ++ F  T
Sbjct: 73  QHAPHGPGVYRMIGESGEVLYVGKAKSVRKRIANYLREGGHTNRIARMISLTASMVFVST 132

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLE N IK++KPRFN+L+RDDKSFPYIL++  H+ P L KHR + + +G YFG
Sbjct: 133 ATETEALLLETNYIKQMKPRFNVLMRDDKSFPYILLSRDHEAPQLTKHRGARSRKGDYFG 192

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFASV AV +T+N+LQR F LRSC DS + +RTRPCLL+QIKRCS PCTGEIS   Y   
Sbjct: 193 PFASVWAVNRTLNALQRAFLLRSCTDSYYENRTRPCLLYQIKRCSAPCTGEISLHDYDHL 252

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
             EA+ FLSG +  ++E +AR M QA     +E A   RDR++ALS IQ           
Sbjct: 253 ASEARDFLSGKSRAVRELLAREMEQAAENLAFEQAARLRDRISALSTIQGAQGINPKTVE 312

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++       C++  FF   QN G   +F + D   + +++L  FL QFY+DKP  
Sbjct: 313 EADVFAIVEEAGHFCVEVFFFRASQNWGNRAYFPRADKSLSLSEVLDAFLAQFYSDKPAA 372

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LLSEE E   +L  +  ++ G+KV+I VP++GEK+ ++E A  N   + +++LS + 
Sbjct: 373 RLLLLSEEIENADVLAQALSERSGHKVEIAVPQRGEKKDLVEAARQNGRETLSRQLSEQA 432

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S + +L +  K F L  + +R+E+YDNSHIMG +AVG M+V G +GF+K  YR FN+   
Sbjct: 433 SQEKLLAELAKAFGLERVLRRVEVYDNSHIMGTNAVGAMIVAGPSGFMKTHYRTFNIKGE 492

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNE--------ENLNFHPKKQEYSFPSWPDVVILDGG 472
           ++   DD  MMR VL RRFS+L++ +        E+    P ++  +FP WPD++++DGG
Sbjct: 493 ELTPGDDYGMMREVLRRRFSRLLREDPIAPSPEAESEEAPPSEKNEAFPQWPDLILIDGG 552

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           +GQ  AA+ +L +L ++N + + SIAKG  R AG E FFV       L  RDP LYF+QR
Sbjct: 553 QGQFDAARAILDELGIDN-VALASIAKGVDRDAGRETFFVTGRPPFRLPPRDPALYFVQR 611

Query: 533 LRDEAHRFAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFAI THR KRRK+   SPLDEI GIGP RKR LL +FGT K ISR++   L  
Sbjct: 612 LRDEAHRFAIGTHRAKRRKEFTKSPLDEIAGIGPARKRALLNAFGTAKAISRAALPDLEK 671

Query: 592 IEGISKKIACKIYNHFHK 609
           + GI+   A  IY+ FH+
Sbjct: 672 VPGINAASAKLIYDFFHE 689


>gi|241760546|ref|ZP_04758639.1| excinuclease ABC subunit C [Neisseria flavescens SK114]
 gi|241319050|gb|EER55552.1| excinuclease ABC subunit C [Neisseria flavescens SK114]
          Length = 613

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 224/617 (36%), Positives = 334/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  D    VLYVGKA NL++R+ SY   N+H+ RI  M+ Q+++I  T+
Sbjct: 13  LKNLPNLPGVYRFFDKDNNVLYVGKAVNLKRRVSSYFQKNDHSPRIALMVKQVHHIETTI 72

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 73  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 131

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 132 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 191

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 192 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 251

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 252 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 311

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 312 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 369

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 370 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 429

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 430 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGES---------VKWPDVVLIDGGK 478

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 479 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 536

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L EI GIG  R++ LL  FG ++ +  +S E L  
Sbjct: 537 VRDESHRFAITGHRKKRDKARVTSSLSEIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 596

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 597 VEGISKALAETIYEHLH 613


>gi|77459288|ref|YP_348795.1| excinuclease ABC subunit C [Pseudomonas fluorescens Pf0-1]
 gi|92058695|sp|Q3KBQ0|UVRC_PSEPF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|77383291|gb|ABA74804.1| excinuclease uvrABC system protein C [Pseudomonas fluorescens
           Pf0-1]
          Length = 607

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 218/609 (35%), Positives = 334/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA +L+KR+ SY        +   ++ +I  +  T+T  E E
Sbjct: 17  RPGVYRMFDSDARLLYVGKAKSLKKRLASYFRKTGLAPKTAALVGRIAQVETTITSNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGQ-FPRLSIHRGAKKAKGKYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TFF+R C DS +++RTRPCL +QIKRC  PC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFFVRQCEDSYYKNRTRPCLQYQIKRCKAPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G +H L  +++  M +A +  ++E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSHALTNELSTAMEEAAINLEFERAAELRDQIALLRRVQDQQSMEGGTGDIDVIA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENI 303
            + N   AC+       G+  G+  FF +   E   A++++ FL Q++   P    P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLGQYFISSPERDLPSEL 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+   L  +     G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVHEDFPALIEAIQALRGRELSISHRVRGTRARWQQLAVTNAEQALGARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +   +   L   P+R+E YD SH  G + V   VV G  G +K+ YR++N+    V 
Sbjct: 376 ARFEALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGAIKSDYRRYNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RRFS+L + E  L              PD++++DGGKGQLS A+ VL
Sbjct: 434 AGDDYAAMHQALTRRFSKLKEGEGKL--------------PDILLVDGGKGQLSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELAVPDLI-LLGVAKGATRKAGFETLYLNDAANEFTLRGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S E +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|313668463|ref|YP_004048747.1| excinuclease ABC subunit C [Neisseria lactamica ST-640]
 gi|313005925|emb|CBN87382.1| excinuclease ABC subunit C [Neisseria lactamica 020-06]
          Length = 628

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 225/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  TV
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTV 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y  
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRN 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVREAATFLNGKTDELTRTLQHKMQAAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+ I+ +        L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPDIIISNFPIP--DALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSNRQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I GIG  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|120554119|ref|YP_958470.1| excinuclease ABC, C subunit [Marinobacter aquaeolei VT8]
 gi|120323968|gb|ABM18283.1| Excinuclease ABC subunit C [Marinobacter aquaeolei VT8]
          Length = 619

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 222/615 (36%), Positives = 342/615 (55%), Gaps = 26/615 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +Q+ E PGVY+M D  G +LYVGKA NL+KR+ SY   +    +   ++ +I  I  T+
Sbjct: 20  LKQLTERPGVYRMYDDTGGILYVGKARNLRKRVSSYFRKSGLAPKTEALVGKIAAIEVTI 79

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSY 121
           T +E EALLLE N+IK L+P +NILLRDDKS+PYI ++     P+L   R  +    G +
Sbjct: 80  TGSETEALLLEQNLIKSLRPPYNILLRDDKSYPYIYLSSHSDYPSLTFRRGRTKKGGGIW 139

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S  AV++++N LQ+ F +RSC++S FR+RTRPCL +QI RC+ PC G IS E+Y 
Sbjct: 140 FGPFPSSGAVKESLNILQKVFRIRSCSESYFRNRTRPCLQYQINRCTAPCVGFISPEEYQ 199

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239
           E +  A  FL G N  + + + ++M  A+   ++E A  +RD++  L H+Q         
Sbjct: 200 EDIRHASMFLEGKNPAIIQDLMQSMEDASRALEFEKAAAYRDQINNLRHVQEQQSVDGEG 259

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
              D  ++  +  + CI       G+  GT  +F +   E T  ++L+ FL Q+Y    T
Sbjct: 260 GDADVIAIAQDAGVVCIVVIIVRGGRVLGTKDYFPRYSLEQTEGELLASFLGQYYFGGDT 319

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +IL+    +   LL  +  +    + +I    +GE+R+ +E A+ NA ++    
Sbjct: 320 RREIPRDILVPVAVDGQELLSQALSEAARRETRIRGNVRGERRRWLELAMTNARQTLLTH 379

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+++ +    L        L   P R+E +D SH  G + V   VV  ENG +K+ YR +
Sbjct: 380 LASKETVYRRLLALRDLLELTETPSRMECFDISHSHGENTVASCVVFDENGPLKSDYRLY 439

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A MR VL RR+ +++  E                 PD+V +DGGKGQ
Sbjct: 440 NIQD--ITAGDDYAAMRQVLTRRYRRMVSGE--------------GKRPDLVFIDGGKGQ 483

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           L+ A+ V ++L + + I +I +AKG  R AGME+      G    +    P L+ IQ +R
Sbjct: 484 LNVAREVFEELGISD-IPLIGVAKGVTRRAGMEQLIDALTGAVFRVPADSPALHLIQHIR 542

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE+HRFAI+ HR  R KK   S L+ I G+GP R+R L++ FG ++ + ++S + +A ++
Sbjct: 543 DESHRFAISGHRAGRDKKRRQSTLEGIEGVGPKRRRELIRYFGGIQELRKASVDEMAKVQ 602

Query: 594 GISKKIACKIYNHFH 608
           GISK +A  IY   H
Sbjct: 603 GISKSLAETIYAALH 617


>gi|56551568|ref|YP_162407.1| excinuclease ABC subunit C [Zymomonas mobilis subsp. mobilis ZM4]
 gi|81355285|sp|Q5NPR4|UVRC_ZYMMO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56543142|gb|AAV89296.1| excinuclease ABC, C subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 664

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 264/617 (42%), Positives = 373/617 (60%), Gaps = 17/617 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M D  G +LYVGKA  L+ R+ +Y   +  + RI  M+SQ  ++    
Sbjct: 58  LKTLPLRPGVYRMYDSKGNILYVGKARALRNRVANYTQISGLSRRIQRMVSQTRSMTIVT 117

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQG 119
           T TE EALLLEA +IKR +P +NILLRDDKSFPYIL+ +    P    L +HR     +G
Sbjct: 118 TVTESEALLLEAQLIKRYRPPYNILLRDDKSFPYILLKEDGTFPQFPSLQRHRGVKRAKG 177

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GPFAS D+V  T+NSLQ+ F LRSC+DS FR+R RPCLL+QIKRCS PC G IS + 
Sbjct: 178 KYYGPFASADSVTLTLNSLQKLFLLRSCSDSFFRNRKRPCLLYQIKRCSAPCVGRISEDD 237

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y +   + + FL+G + ++++K+   M QA+   +YE A ++RDRL AL+ IQ+H     
Sbjct: 238 YRDLAVDTRDFLAGKSTHVQKKLVTAMEQASNDLNYELAAVYRDRLKALAFIQSHQSINS 297

Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D F +     LACIQ  F    QN G   ++L    E     ++  FL QFY D
Sbjct: 298 GNLRNADIFGIECRAGLACIQVFFIRNRQNWGHHAYYLNHIDEQPLEDVMQSFLGQFYED 357

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           K  P++IL +    + ++LE +   Q  Y+VK   P++GE +K+++QA+ NA  +  ++L
Sbjct: 358 KIAPKDILTNYLPSDKNVLEDALSSQRDYRVKFYQPQRGELKKLVDQAVRNAKEAIDRRL 417

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           +   + + +LK+    F L  IP RIE+YDNSHIMG + VG M+V G  GF +N YRKFN
Sbjct: 418 AEASTQKQLLKEMVNLFHLDKIPDRIEVYDNSHIMGSNMVGGMIVAGPEGFRRNSYRKFN 477

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD  MMR VL RRFS+L              ++S   WPD++++DGGKGQ+
Sbjct: 478 IKSPSINPGDDFEMMREVLTRRFSRL---------ERSDPDHSSSEWPDLLLIDGGKGQV 528

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
            A + +L +  + + I I+ I+KGP R+AG E F +  G    L     +L+++QRLRDE
Sbjct: 529 HAVKDILAEQGISD-IAIVGISKGPDRNAGREHFHLVDGSEYALPPNSGLLFYLQRLRDE 587

Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAI THR +R K    SPLDE+ GIGP RK+ LL  FGT + +  +S   L  + GI
Sbjct: 588 AHRFAIGTHRAKRAKNLTSSPLDEVPGIGPSRKKALLLHFGTARDVKNASLSELEKVNGI 647

Query: 596 SKKIACKIYNHFHKNTS 612
           S  IA +IY+ FH + +
Sbjct: 648 SSAIARQIYDFFHHSPA 664


>gi|330958463|gb|EGH58723.1| excinuclease ABC subunit C [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 607

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 217/609 (35%), Positives = 331/609 (54%), Gaps = 25/609 (4%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D    +LYVGK  NL+K + SY     H  +   ++++I  I  T+T  E E
Sbjct: 17  RPGVYRMFDADATLLYVGKPKNLKKSLASYFRKTGHAPKTGALVARIAQIETTITGNETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDS-AFPRLSIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G ++ L +++   M +A +  D+E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSNALSDELNTAMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENI 303
            + N   AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  +
Sbjct: 256 AFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEV 315

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +++   E+   L  +  +  G ++ I+   +G + +  + A+ NA ++   +L+      
Sbjct: 316 IVNVVNEDFPALIDAIEELRGVEMVISHRVRGTRARWQQMAVTNAEQALAARLANRQHVA 375

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
              +       L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V 
Sbjct: 376 ARFEALAVVLGLDDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VT 433

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL
Sbjct: 434 AGDDYAAMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAI
Sbjct: 480 NELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAI 538

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A 
Sbjct: 539 TGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598

Query: 602 KIYNHFHKN 610
            IY + H  
Sbjct: 599 SIYANLHSE 607


>gi|309379255|emb|CBX22212.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 617

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 224/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  TV
Sbjct: 17  LKNLPKLPGVYRFFDKGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTV 76

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 77  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 135

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 136 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 195

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FLSG    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 196 SVRQAATFLSGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 255

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 256 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 315

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+ I+ +        L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 316 LGKSKPDIIISNFPIP--DALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 373

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 374 RRLQQSNRQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 433

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  +D A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 434 RYNITTA--KPGNDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 482

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 483 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 540

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I GIG  R++ LL  FG ++ +  +S E L  
Sbjct: 541 VRDESHRFAITGHRKKRDKARVTSSLSDIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 600

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 601 VEGISKALAETIYNHLH 617


>gi|319638199|ref|ZP_07992962.1| UvrABC system protein C [Neisseria mucosa C102]
 gi|317400472|gb|EFV81130.1| UvrABC system protein C [Neisseria mucosa C102]
          Length = 613

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 223/617 (36%), Positives = 334/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  D    VLYVGKA NL++R+ SY   ++H+ RI  M+ Q+++I  T+
Sbjct: 13  LKNLPNLPGVYRFFDEDNNVLYVGKAVNLKRRVSSYFQKSDHSPRIALMVKQVHHIETTI 72

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 73  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 131

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 132 GPYPNSNAVRDSIQLLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGYISEEDYRD 191

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 192 SVREAATFLNGKTDELTHTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 251

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 252 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 311

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 312 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 369

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 370 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 429

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 430 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGEA---------VKWPDVVLIDGGK 478

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 479 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 536

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L EI GIG  R++ LL  FG ++ +  +S E L  
Sbjct: 537 VRDESHRFAITGHRKKRDKARVTSSLSEIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 596

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 597 VEGISKALAETIYEHLH 613


>gi|149374951|ref|ZP_01892724.1| excinuclease ABC subunit C [Marinobacter algicola DG893]
 gi|149360840|gb|EDM49291.1| excinuclease ABC subunit C [Marinobacter algicola DG893]
          Length = 625

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 226/617 (36%), Positives = 344/617 (55%), Gaps = 26/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +Q+ E PGVY+M D AG VLYVGKA NL+KR+ SY   +    +   ++S+IN+I  T+
Sbjct: 26  LKQLTERPGVYRMYDTAGNVLYVGKARNLKKRVTSYFRKSGLAPKTEALVSRINSIEVTI 85

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSY 121
           T +E EALLLE N+IK L+P +NILLRDDKS+PYI ++     P+L   R  +    G++
Sbjct: 86  TGSETEALLLEQNLIKSLRPPYNILLRDDKSYPYIYLSSHDDYPSLTFRRGRTKKGGGTW 145

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
            GPF S  AV++++N LQ+ F +RSC++S FR+RTRPCL +QI RC+ PC G IS E Y 
Sbjct: 146 HGPFPSSGAVKESLNILQKIFRIRSCSESYFRNRTRPCLQYQINRCTAPCVGFISPEDYR 205

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239
           E +  A  FL G N  + + +   M  A    ++E A ++RD++  L H+Q         
Sbjct: 206 EDMRHATMFLEGKNPAILQDLMAAMETAAKNLEFEKAGVYRDQINHLRHVQEQQSVDGEG 265

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
              D  ++  +  + CI       G+  GT  +F +   E + A++LS FL Q+Y    T
Sbjct: 266 GDADVVAISQDAGVVCIVVIIVRGGRVLGTKDYFPRYSIEQSEAELLSAFLGQYYFGGST 325

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +IL+  +     LL  +  +  G   ++    +GE+R+ ++ A+ NA ++    
Sbjct: 326 RREIPPDILVPVDVGGQELLSQALTESAGRDTRVRKNVRGERRRWLDLAMTNARQTLLTH 385

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+++ +    L        L   P R+E +D SH  G + V   VV  ENG +K+ YR +
Sbjct: 386 LASKETVYRRLLALRDLLDLAETPSRMECFDISHSHGENTVASCVVFDENGPLKSDYRLY 445

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    V   DD   MR VL RR+ +++  E                 PD+V +DGGKGQ
Sbjct: 446 NIEG--VTGGDDYGAMRQVLTRRYKRMVAGE--------------GKRPDLVFIDGGKGQ 489

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           L+ A+ V  +L V + I +I +AKG  R AGME+      G+   +    P L+ IQ +R
Sbjct: 490 LNIAREVFDELGVTD-IPLIGVAKGVTRRAGMEQLIDAMTGDLYRVPADSPALHLIQHIR 548

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE+HRFAIT HR RR KK   S L+ I G+GP R+R L++ FG ++ + ++S + ++ ++
Sbjct: 549 DESHRFAITGHRARRDKKRRQSTLEGIEGVGPKRRRDLIRYFGGIQELRKASIDEMSKVQ 608

Query: 594 GISKKIACKIYNHFHKN 610
           GIS+ +A  IY   H  
Sbjct: 609 GISRNLAETIYAVLHDE 625


>gi|88800063|ref|ZP_01115633.1| excinuclease ABC subunit C [Reinekea sp. MED297]
 gi|88777189|gb|EAR08394.1| excinuclease ABC subunit C [Reinekea sp. MED297]
          Length = 611

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 216/613 (35%), Positives = 333/613 (54%), Gaps = 25/613 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D    +LYVGKA NL+ R+ SY      T++   ++ +I++I  T+T 
Sbjct: 17  NLTSRPGVYRMYDADDTLLYVGKAKNLKNRVASYFRGRGLTNKTVALVQRIHHIETTITH 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +I R KP +NILL DDKS+PY+ ++  H  P L+ HR     +  +FGP
Sbjct: 77  SETEALLLEQTLINRHKPPYNILLVDDKSYPYLKLSRSHTWPGLFVHRGKRNSKDEFFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F +R C DSVF +R +PCL +QIKRC  PC G +  E+Y + +
Sbjct: 137 FPSAHAVRESLVLLQKAFRIRQCEDSVFENRKKPCLQYQIKRCKAPCVGYVDPEEYEQDL 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242
            + + FL+G +  L + I   M++A    DYE A  +RD+L  L  +Q           +
Sbjct: 197 DKTRAFLNGKSQQLIDTIEIEMDKAAEVYDYEQAAEYRDQLLFLRKVQEQQYVSGSKGNV 256

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PC 299
           D F++       CI       G+  G+ +FF K   E     I++ FL Q+Y  +    C
Sbjct: 257 DVFAVVQQPGGVCIHFLMVRDGRMIGSRSFFPKPGIEDDARLIMTGFLAQYYLARHQGDC 316

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P ++L +    +   LE +  +Q G  V+I    + +  K ++ A  NA      +LS  
Sbjct: 317 PGSVLTNVPLPDAGSLEAALKEQMGRTVQIQHSVRSQNAKWLQLAETNAAEQLQMRLSHG 376

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
           +     L+   +   L  +P+R+E +D SH  G + V   VV  + G  K+ YRKFN+  
Sbjct: 377 LQVTQRLEALREALELEQLPQRLECFDISHSSGEATVASCVVFDQEGPNKSMYRKFNIEG 436

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   + RR+S+L K E+ +              PD++I+DGGKGQ+S A
Sbjct: 437 --ITEGDDYAAMTQAISRRYSRLQKEEQAM--------------PDLLIVDGGKGQMSMA 480

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAH 538
           + V+ +L +   I ++ +AKG  R  GME  F +   + ++L    P L+ IQ +RDEAH
Sbjct: 481 REVMNELGIA--IPLLGVAKGETRKPGMETLFFETPDQVILLPNHSPALHLIQHIRDEAH 538

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR KA   S LD+I  +GP R+R L++ FG+ + +  +S + ++ + GISK
Sbjct: 539 RFAITGHRARRGKARVGSLLDDIPQVGPGRRRALIRHFGSAQAVKSASVDEISKVSGISK 598

Query: 598 KIACKIYNHFHKN 610
            +A  IY+  H +
Sbjct: 599 GLARDIYDFLHSS 611


>gi|146282443|ref|YP_001172596.1| excinuclease ABC subunit C [Pseudomonas stutzeri A1501]
 gi|145570648|gb|ABP79754.1| excinuclease ABC subunit C [Pseudomonas stutzeri A1501]
          Length = 585

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 209/603 (34%), Positives = 327/603 (54%), Gaps = 25/603 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D   ++LYVGKA NL+KR+ SY        +   ++++I  +  T+T  E EALLLE 
Sbjct: 1   MFDAQAKLLYVGKAKNLKKRLASYFRKTGQAPKTAALVAKIAQVETTITANETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
            +IK+ +P +NILLRDDKS+PY+ ++     P L  HR +    G YFGP+ S  A+ ++
Sbjct: 61  TLIKQWRPPYNILLRDDKSYPYVFLSAGE-FPRLSIHRGAKKEPGRYFGPYPSAGAIRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ LQ+ FF+R C DS FR+RTRPCL +QIKRC  PC   +  ++Y E V  +  FL G 
Sbjct: 120 LSLLQKAFFVRQCEDSYFRNRTRPCLQYQIKRCKAPCVKLVDPQEYAEDVRHSVMFLEGR 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252
           ++ L E+++RNM +A +  D+E A   RD++  L  +Q+          +D  +   +  
Sbjct: 180 SNALAEELSRNMEKAAMNLDFERAAEIRDQIGILRRVQDQQSMEGGSGNVDIVAAVVSPG 239

Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLSEEA 309
            AC+       G+  G+  FF +   E + +++L  FL Q+Y    ++  P  ++++   
Sbjct: 240 GACVHLITVRGGRVLGSKNFFPQVAIEESVSEVLQAFLEQYYLGATERDLPSELIVNAVH 299

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369
           E+ + L  +  +  G ++ IT   +  + +  + AL NA ++   +L+         +  
Sbjct: 300 EDFATLIDAISELRGVELTITHRVRATRARWQQLALTNAEQALGARLANRQHLSARFEAL 359

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429
            +   L   P R+E +D SH  G + V   VV G  G +K+ YR++N+    V   DD A
Sbjct: 360 AEALELDEPPMRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRYNIEG--VTAGDDYA 417

Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
            M   L RRF +  + E  L              PD++++DGGKGQL+ A+ VL++L V 
Sbjct: 418 AMHQALSRRFRKAAEGEGKL--------------PDILLVDGGKGQLNMAREVLEELAVP 463

Query: 490 NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
             I ++ +AKG  R  G+E  ++        L    P L+ IQ++RDEAHRFAIT HR R
Sbjct: 464 ELI-LLGVAKGVTRKPGLETLYLNDAAHEFTLPADSPALHLIQQVRDEAHRFAITGHRAR 522

Query: 549 RKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R KA   S L+++ GIGP R+R LL  FG ++ + R+S + +A   GISKK+A  IY   
Sbjct: 523 RGKARRTSTLEDVPGIGPKRRRELLTHFGGLQELCRASLDEIAKAPGISKKLAESIYAAL 582

Query: 608 HKN 610
           H  
Sbjct: 583 HSE 585


>gi|119478435|ref|ZP_01618420.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2143]
 gi|119448521|gb|EAW29768.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2143]
          Length = 625

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/616 (35%), Positives = 338/616 (54%), Gaps = 26/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PG+YQM    G +LY GKA NL+ R+ SY        +   ++S+I +I+ T+
Sbjct: 26  LKSVTTKPGIYQMYGADGNILYTGKAKNLKNRLSSYFRKQGLAIKTAALVSKIASIQVTI 85

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE+EALLLE N+IK  +P +NILLRDDKSFP+I ++ +H+ P L  HR +   +G YF
Sbjct: 86  TNTEIEALLLEHNLIKAQRPPYNILLRDDKSFPFIYLSTQHEFPRLSIHRGAKKTKGRYF 145

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ S  AV+++++ LQ+ F +R C DS +++R+RPCL  QI RCS PC  ++S+++Y  
Sbjct: 146 GPYPSSGAVKESLSFLQKVFKVRQCEDSYYKNRSRPCLQHQINRCSAPCVNKVSADEYHR 205

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            V     FL G N NL +++A  M+ A+   ++E+A  +RD++  L  +Q          
Sbjct: 206 AVRHTTMFLEGKNKNLIKELADQMDSASADLNFETAAEYRDQIQHLQQVQASQFIDGESG 265

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----- 295
            +D  +  +   +ACIQ  F   G+  G+ ++F K   +    QIL  FL Q+Y      
Sbjct: 266 DIDIAACEYKAGVACIQVLFVRGGRVLGSKSYFPKAYLDEDEEQILEAFLSQYYLVDSAR 325

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P  I++S   E   LL  +F ++ G K  I    +  + K +  A+  A ++ T  
Sbjct: 326 GDNMPREIVVSHTLEHAELLSKAFTEKLGRKTTINARVRSNRAKWLALAVETAKQNLTGH 385

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +     +   +   LP  PKR+E +D SH  G + V   VV   NG +K+ YR+F
Sbjct: 386 LSNKQTIFQRYESLQEALKLPEKPKRLECFDISHSSGEATVASCVVFDANGPLKSDYRRF 445

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   L RR++++   E                 PDV+ +DGGKGQ
Sbjct: 446 NIEG--ITGGDDYAAMHQALTRRYTRIKTGE--------------GVLPDVLFIDGGKGQ 489

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLR 534
           +S A  VL++L + N + ++ +AKG  R AG E  F     E  V+      L+ +Q +R
Sbjct: 490 VSQAVAVLEELQITN-LLVVGVAKGTTRKAGFEVLFRADTREEFVMPSDSAGLHLVQHIR 548

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE+HRFAIT H++RR KK   SPL+ I G+GP R+R LL+ FG  + +  +S + LA+I 
Sbjct: 549 DESHRFAITGHKQRRDKKRRESPLEGIPGVGPKRRRELLRHFGGWQEVKAASADDLANIP 608

Query: 594 GISKKIACKIYNHFHK 609
           GIS K+A  I    H 
Sbjct: 609 GISDKLARDIVAALHN 624


>gi|325142559|gb|EGC64959.1| excinuclease ABC, C subunit [Neisseria meningitidis 961-5945]
          Length = 628

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 219/617 (35%), Positives = 337/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N+IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  + C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSNQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPD V++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEQ 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|94499637|ref|ZP_01306174.1| excinuclease ABC subunit C [Oceanobacter sp. RED65]
 gi|94428391|gb|EAT13364.1| excinuclease ABC subunit C [Oceanobacter sp. RED65]
          Length = 600

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 212/613 (34%), Positives = 341/613 (55%), Gaps = 26/613 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G +LYVGKA NL+ R+ SY  SN   ++   ++ +I++I  T+
Sbjct: 9   LKHLSTKPGVYRMYDSEGLILYVGKAKNLKNRVSSYFASNGLNNKTMALVQRIDDIEVTI 68

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLE N+IK+ KPR+NILL+DDKS+PYI  +  H+ P L   R      G YF
Sbjct: 69  TGSETEALLLEQNLIKKHKPRYNILLKDDKSYPYIFCS-DHQYPLLAYVRGKRKKGGEYF 127

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S  AV +++N LQ+ F LR+C DS F +R+RPCL  QI RCS PC G IS E Y +
Sbjct: 128 GPFPSTYAVRESLNFLQKVFKLRNCEDSYFSNRSRPCLQHQIGRCSAPCVGLISPEDYAK 187

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            ++ A+ FL G N++L   +  +M++A+ + D+E A   RD++  L  IQ          
Sbjct: 188 DLYHAQMFLRGKNNDLISDLQMDMDRASEQLDFEKAAEFRDQIQHLRKIQESQSIEASDG 247

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKP 298
            +D F+++  + +  +       G+  G+ +F+ K + +      L+ F+ QFY   ++ 
Sbjct: 248 DLDLFAIHIEQGICVVHVINIREGRMLGSRSFYPKLNMDEDEDAALTAFISQFYLQFNRE 307

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ ++ S    +T +L  +  +  G KVK++   + ++ + ++  + NA  S   K   
Sbjct: 308 IPDEVVCSHTLSDTQVLSGALSEYRGKKVKLSFQVRAQRLRWLQLGINNAKESCRIKSQG 367

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +       +      ++    +R+E +D SH  G + V   VV  + G +K+ YRKFN+ 
Sbjct: 368 KQHIAQQYQALQSFLSMEQPIERMECFDISHSHGEATVASCVVFNQEGPLKSDYRKFNIE 427

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR  L RRF +L+ +++                PD++++DGGKGQ + 
Sbjct: 428 G--VEAGDDYGAMRQALTRRFKKLVDDKK----------------PDLLLIDGGKGQTNI 469

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  VL  L++   I ++ ++KG  R AGME     +G+   L+   P L+ IQ++RDE+H
Sbjct: 470 ALDVLAGLDISG-IHVLGVSKGVTRKAGMEVLLY-RGKEFTLDKSSPALHLIQQIRDESH 527

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR K    S L++I GIG  R++ LL+ FG +  +  ++ + +A + GIS+
Sbjct: 528 RFAITGHRARRGKVRGRSVLEDIPGIGAKRRKELLRFFGDLAQVKAANIDEIAKVPGISR 587

Query: 598 KIACKIYNHFHKN 610
           + A +IY+  H  
Sbjct: 588 QKATEIYSALHDE 600


>gi|311694459|gb|ADP97332.1| excinuclease ABC subunit C [marine bacterium HP15]
          Length = 620

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 222/617 (35%), Positives = 339/617 (54%), Gaps = 26/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +Q+ E PGVY+M D  G VLYVGKA NL+KR+ SY        +   ++ +I +I  T+
Sbjct: 21  LKQLTERPGVYRMYDEGGSVLYVGKARNLKKRVGSYFRKTGLAPKTEALVGKIASIEVTI 80

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSY 121
           T +E EALLLE N+IK L+P +NILLRDDKS+PYI ++     P+L   R  +    G++
Sbjct: 81  TGSETEALLLEQNLIKSLRPPYNILLRDDKSYPYIYLSSHSDYPSLTFRRGRTKKGGGTW 140

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S  AV++++N LQ+ F +R+C++S FR+RTRPCL +QI RC+ PC   I+ E+Y 
Sbjct: 141 FGPFPSSGAVKESLNVLQKIFRIRNCSESFFRNRTRPCLQYQINRCTAPCVEYITPEEYQ 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239
           + +  A  FL G N  +   +   M  A+   ++E A  +RD++  L H+Q         
Sbjct: 201 QDIRHATMFLEGKNPAILHDLMNAMEAASKNLEFEKAAAYRDQINHLRHVQEQQSVDGEG 260

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
              D  ++  +  + CI       G+  GT  +F +   E T  ++LS FL Q+Y    T
Sbjct: 261 GDADVIAIAQDAGIVCIVVIIVRGGRVLGTKDYFPRYSIEQTEGELLSAFLGQYYFGGNT 320

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +IL+  E E   LL  +  +    + +I    +GE+R+ +E A+ NA ++    
Sbjct: 321 RREIPRDILVPVEVEGQELLAQALSESANRETRIRGNVRGERRRWLELAMTNARQTLLTH 380

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+++ +    L        L   P R+E +D SH  G + V   VV  ENG +K+ YR +
Sbjct: 381 LASKETVYRRLLALRDLLELSETPSRMECFDISHSHGENTVASCVVFDENGPLKSDYRLY 440

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    V   DD A MR VL RR+ +++  E                 PD+V +DGGKGQ
Sbjct: 441 NIEG--VTAGDDYAAMRQVLSRRYKRMVAGE--------------GKRPDLVFIDGGKGQ 484

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           L+ A+ V  +L + + I +I +AKG  R AGME+      G+   +    P L+ IQ +R
Sbjct: 485 LNIAREVFDELEISD-IPLIGVAKGVTRRAGMEQLIDAMTGDVFRVPADSPALHLIQHIR 543

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE+HRFAIT HR RR KK   S L+ I G+GP ++R L++ FG ++ + ++  + +  ++
Sbjct: 544 DESHRFAITGHRARRDKKRRQSTLEGIEGVGPKKRRDLIRYFGGIQELRKAGVDEMTKVQ 603

Query: 594 GISKKIACKIYNHFHKN 610
           GISK +A  IY   H  
Sbjct: 604 GISKSLAETIYAALHDE 620


>gi|330994643|ref|ZP_08318566.1| UvrABC system protein C [Gluconacetobacter sp. SXCC-1]
 gi|329758284|gb|EGG74805.1| UvrABC system protein C [Gluconacetobacter sp. SXCC-1]
          Length = 598

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 261/603 (43%), Positives = 365/603 (60%), Gaps = 15/603 (2%)

Query: 13  YQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLL 72
           Y+ML   G VLYVGKA NL+KR+ SY H +  T R+  M+S+ + +    T TE EALLL
Sbjct: 2   YRMLGAKGDVLYVGKALNLKKRVTSYTHVSRLTERLRRMVSETHGMEIVTTHTEAEALLL 61

Query: 73  EANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVE 132
           E+N IKR++PR+NILLRDDKS+P+I++TD+H+ P + KHR       SY+GPFAS  +V 
Sbjct: 62  ESNYIKRMQPRYNILLRDDKSYPWIMLTDRHEFPQISKHRGKPVKGASYWGPFASAWSVN 121

Query: 133 KTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLS 192
           +T+N LQRTF LRSC+DS  + RTRPCLL QI RCS PCT  IS E Y     +A+ FL+
Sbjct: 122 QTLNLLQRTFLLRSCSDSEMQGRTRPCLLHQIHRCSAPCTDRISREDYAGLAAQARDFLA 181

Query: 193 GGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYNRMDCFSLY 248
           G N +++E++ R M +A    ++E A   RDR+  LS +Q  +           D  +++
Sbjct: 182 GRNPHMREQLGREMEEAAGALEFERAAAIRDRIRGLSALQQDSSVINPSTVTDADIIAIW 241

Query: 249 HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEE 308
                +CIQ  F   G+N G   FF     +     +L+ F+ QFY DKP P  +L++++
Sbjct: 242 QIAGQSCIQVFFIRAGRNNGNRAFFPSHARDENAPDVLAAFIGQFYDDKPPPAQVLVNQD 301

Query: 309 AEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKD 368
             E  +L  +   + G KV+I  P++GEKR +IE A INA  +  ++++       +L+ 
Sbjct: 302 LPELDVLTAALGLRRGRKVEIIHPRRGEKRGVIEHAEINAREALERRMAESAGQARLLQG 361

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
               F L   P+RIE YDNSHI G +A G MVV G  GF K  YRKF++        DD 
Sbjct: 362 VADLFGLAEPPRRIETYDNSHIQGANAYGVMVVGGPEGFDKRAYRKFSIKGPVTPG-DDF 420

Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488
           AMMR VLERRF + +K+ E               WPD++++DGG GQ +A +GVL +L V
Sbjct: 421 AMMREVLERRFRRALKDREEGVRPE--------DWPDILLIDGGAGQYTAVRGVLDELGV 472

Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
              +T+++IAKGP R AG E F  +      L  RDP+LY++QRLRDEAHRFAITTHR  
Sbjct: 473 TG-VTLVAIAKGPDRDAGREWFHTEGRAPFQLPSRDPVLYYLQRLRDEAHRFAITTHRAG 531

Query: 549 RKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R K    S LD+I G+GP RKR LL+ FG+ + + ++    L +  GI++ +A  IY +F
Sbjct: 532 RSKTLVRSELDDIPGVGPARKRALLKHFGSARSVRQAGLGELENAPGINRDMARAIYGYF 591

Query: 608 HKN 610
           H +
Sbjct: 592 HPD 594


>gi|30248937|ref|NP_841007.1| uvrC nuclease subunit of the excinuclease complex [Nitrosomonas
           europaea ATCC 19718]
 gi|81436207|sp|Q820N6|UVRC_NITEU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|30138554|emb|CAD84844.1| uvrC Nuclease subunit of the excinuclease complex [Nitrosomonas
           europaea ATCC 19718]
          Length = 604

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/611 (38%), Positives = 341/611 (55%), Gaps = 27/611 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+ML+ AG V+YVGKA +L+KR+ SY   +  + RI  M+SQI  I  TVT 
Sbjct: 14  TLPAQPGVYRMLNAAGDVIYVGKAIDLRKRVSSYFQKSGLSPRIQLMVSQIAGIETTVTR 73

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+L+T +H  P L  +R +   +  YFGP
Sbjct: 74  SEAEALLLENNLIKSLAPRYNILFRDDKSYPYLLLT-RHIFPRLAFYRGALDDRHQYFGP 132

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +   V+ +I  LQ+ F LR+C +SVF HRTRPCLL+QIKRCSGPC G I+ E Y + V
Sbjct: 133 FPNAGVVKSSIQLLQKVFRLRTCENSVFDHRTRPCLLYQIKRCSGPCVGLITPEAYQQDV 192

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A  FL G    + + I + M  A+ ++DYE A   RD++ AL  IQ            
Sbjct: 193 KSAAMFLQGKQDEVLKTIEQKMFTASDQQDYEQAAQLRDQMQALRKIQEKQFVDSGKALD 252

Query: 242 MDCFSLYHNKNLACIQTC--FFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
            D  +     +   +         G++ G  TFF +   E+  + +L  F+ Q Y ++  
Sbjct: 253 ADVIACAIEPDSHAVAVNLVMIRSGRHLGDKTFFPQNVYEADISTVLEAFVTQHYLNRSV 312

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  I+L ++    +LL+     Q G+K+ +T    GE+RK ++ A  NA  +  Q L  +
Sbjct: 313 PPLIILGQKI-RVTLLQKLLSDQAGHKITLTTNPIGERRKWLDMAAENAQLALQQMLIQQ 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            S +  L+   +   LP +  RIE +D SH MG + +   VV         +YR++N+  
Sbjct: 372 ASQEDRLQALQEALNLPGLA-RIECFDISHTMGEATIASCVVYDRFAMRNGEYRRYNI-- 428

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR VL+RR+++L   E  L              PD++++DGGKGQ+  A
Sbjct: 429 TGIVPGDDYAAMRDVLQRRYAKLAMEEGKL--------------PDLILIDGGKGQIRVA 474

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAH 538
             V+ +L + N I ++ +AKG  R  G+E+     + EAL L    P L+ IQ++RDEAH
Sbjct: 475 SEVMIELGL-NDIPLVGVAKGETRKPGLEQLILPWQEEALHLPDDHPALHLIQQIRDEAH 533

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HR +R K    S L++I+GIG  R++ LL  FG +K +  +S E L   EGIS+
Sbjct: 534 RFAIQGHRAKRAKTRKISTLEQISGIGTKRRQSLLTRFGGLKGVKNASIEELQQTEGISR 593

Query: 598 KIACKIYNHFH 608
            +A KIY    
Sbjct: 594 SLAEKIYRELR 604


>gi|114771344|ref|ZP_01448764.1| excinuclease ABC subunit C [alpha proteobacterium HTCC2255]
 gi|114548269|gb|EAU51156.1| excinuclease ABC subunit C [alpha proteobacterium HTCC2255]
          Length = 599

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 267/604 (44%), Positives = 373/604 (61%), Gaps = 14/604 (2%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+ML+  G VLYVGKA NL++R+ SY     H+ RI  MIS  +++ F  T TE E
Sbjct: 3   SPGVYRMLNQDGEVLYVGKARNLKRRVSSYAKPTGHSARIGRMISNTSSMMFLTTQTETE 62

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK+LKPR+N+LLRDDKSFP I+I+  H+ P + KHR   +    YFGPFASV
Sbjct: 63  ALLLEQNLIKQLKPRYNVLLRDDKSFPNIMISSSHEFPKIAKHRGRRSKGSEYFGPFASV 122

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +V +T++ LQR F LR+C D+ F  RTR CL +QI RCSGPC G+ISS  Y + V +A+
Sbjct: 123 TSVNRTLHHLQRIFLLRTCTDNDFSSRTRACLQYQIARCSGPCVGKISSNNYNQLVDDAR 182

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245
           KFL G +  ++E +A+ M +A+    +E A   RDR+ AL+++Q+         N  D  
Sbjct: 183 KFLQGKSTKIQESMAKEMAEASRDLQFEKAASLRDRIRALTNVQSSQGINPQTVNEADIV 242

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           SLY   + ACIQ  F    QN G   F+ +  S +   +++  FL QFY +K  P+ IL+
Sbjct: 243 SLYMEGDQACIQVFFIRANQNWGNRAFYPRNTSGADADEVMESFLAQFYDNKTPPKLILV 302

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           S       LL  +   + G KV+I  PK+GE+ +++  A  NA  S  +K+S   +   +
Sbjct: 303 SCTVSNLDLLVDALSSKRGNKVEIIQPKRGERAELVFNAERNARESLARKMSESATQAKL 362

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           LK  +  F+L + PKRIE+YDNSHI G  AVG M+  G +G++K+ YRK+N+   D    
Sbjct: 363 LKGVSDAFSLENTPKRIEVYDNSHIQGAFAVGAMIASGPDGYMKSSYRKYNIRYEDTVAG 422

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD  MM+ VLERRF  LIK +          +    +WPD++++DGG GQ+SA   +L +
Sbjct: 423 DDFGMMKEVLERRFKSLIKED---------PDKKTENWPDLLLIDGGAGQVSAVAEILTE 473

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L + N +  + +AKG  R  G E+F  K      L   DP+LYFIQRLRDEAHRFAITTH
Sbjct: 474 LGI-NDVPFVGVAKGIDRDQGKEEFHCKGKPVFALQRNDPVLYFIQRLRDEAHRFAITTH 532

Query: 546 RKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R KA   + LDE+ G+G  RKR +L  FG+ K  SR+S + L ++EG+S K+A  IY
Sbjct: 533 RAKRSKAIGITTLDEVPGVGAARKRAILAHFGSAKSASRASLKDLKAVEGLSSKMAQIIY 592

Query: 605 NHFH 608
           + +H
Sbjct: 593 DFYH 596


>gi|254805125|ref|YP_003083346.1| putative excinuclease ABC subunit C [Neisseria meningitidis
           alpha14]
 gi|254668667|emb|CBA06357.1| putative excinuclease ABC subunit C [Neisseria meningitidis
           alpha14]
          Length = 628

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/617 (35%), Positives = 337/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N+IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  SL  +  + C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLSLAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPDPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPD V++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|254480717|ref|ZP_05093964.1| excinuclease ABC, C subunit [marine gamma proteobacterium HTCC2148]
 gi|214039300|gb|EEB79960.1| excinuclease ABC, C subunit [marine gamma proteobacterium HTCC2148]
          Length = 591

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 222/600 (37%), Positives = 338/600 (56%), Gaps = 24/600 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D AG++LYVGKA NL+ R+ SY  ++  T +   ++S+I++I+ TVT TEV+ALLLE 
Sbjct: 1   MYDEAGKLLYVGKAKNLKNRVGSYFRASGLTDKTLALVSRIHDIQVTVTSTEVDALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N+IK  +P +NILL+DDKSFPYI I+   K P +  HR +   +G YFGP+ S  AV ++
Sbjct: 61  NLIKNYQPPYNILLKDDKSFPYIYIST-DKYPRISLHRGAQKGKGHYFGPYPSAGAVRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ LQ+ F +R C +S FR+R+RPCL  QI RC+ PC   ++ + Y + V     FL G 
Sbjct: 120 LHFLQKVFKVRQCENSYFRNRSRPCLQHQIDRCTAPCVDIVTEDDYGQQVENTSLFLRGK 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252
           +  L  ++A +M QA  K ++ESA + RD+LA L H+Q           +D  +   +  
Sbjct: 180 SQQLMVRLADDMEQAAAKLEFESAAVLRDQLAQLQHVQASQGIEGVKGDLDILAAAVDTG 239

Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCPENILLSEEAE 310
            AC+Q  F    +  G+ T++     E +  ++L+ F+ Q+Y +  +  P  I+++EE +
Sbjct: 240 RACVQVLFVRGARVLGSKTYYPPLKLEESPGEVLAAFVPQYYLNGTRAVPGEIIVNEEPD 299

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370
             S L  +   Q   KV++    +  + + +  A   A  +    L+ + + Q  L+   
Sbjct: 300 SVSALAEALSVQAERKVQLRSRVRDARARWLRLAQQTAETNLAAHLAGKQTVQARLQALQ 359

Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430
           +  +LP +P+R+E +D SH  G + V   VV  +NG  K+ YRKFN+    +   DD A 
Sbjct: 360 ECLSLPEVPERMECFDISHSSGEATVASCVVFDQNGARKSDYRKFNIEG--ITGGDDYAA 417

Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490
           M+  LERR+ +L   E               + PD++ +DGGKGQ+S A GVL+ L +  
Sbjct: 418 MQQALERRYKRLKSGE--------------GTQPDILFIDGGKGQVSQAMGVLEDLQISG 463

Query: 491 RITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549
            + +I +AKG  R AG E       G    L    P L+ IQ++RDEAHRFAIT HR RR
Sbjct: 464 -VLVIGVAKGATRKAGFETLIDGATGRESQLPGDSPALHLIQQIRDEAHRFAITGHRARR 522

Query: 550 KKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            KA   S L++I G+G  R+R LL+ FG+   +  +S E L  I GIS  +A +IY+H H
Sbjct: 523 DKARQRSVLEDIPGVGAKRRRELLRHFGSASGVVNASVEELKKISGISATMAAQIYDHLH 582


>gi|158425590|ref|YP_001526882.1| excinuclease ABC C subunit [Azorhizobium caulinodans ORS 571]
 gi|158332479|dbj|BAF89964.1| excinuclease ABC C subunit [Azorhizobium caulinodans ORS 571]
          Length = 718

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 291/661 (44%), Positives = 390/661 (59%), Gaps = 55/661 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           +++  P  PGVY+ML   G VLYVGKA +++KRI SY     HT+RI  MI+   ++ F 
Sbjct: 54  AAKHAPTGPGVYRMLGADGTVLYVGKAKSIKKRILSYTRLVGHTNRIARMIAATASMEFV 113

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEAN+IK+LKPRFN+LLRDDKSFPYILIT  H  P + KHR + +  G Y
Sbjct: 114 STATEPEALLLEANLIKQLKPRFNVLLRDDKSFPYILITADHPAPQILKHRGARSRPGDY 173

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFASV AV++TIN+LQR F LRSC+DS + +R+RPCLL+QIKRCSGPCTGE+S+  Y 
Sbjct: 174 YGPFASVWAVDRTINALQRAFLLRSCSDSYYENRSRPCLLYQIKRCSGPCTGEVSTTDYA 233

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E V EA+ FL+G +  +KE++A+ M  A  + ++E A   RDRLAALS +Q         
Sbjct: 234 ELVREARAFLAGRSRAIKEELAKEMEAAAEELEFERAARLRDRLAALSAVQGSQGINPRS 293

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ +      CI+  FF  GQN G   ++ + D       +L  FL QFY DKP
Sbjct: 294 VEEADVFACHQQGGATCIEVFFFRTGQNWGNRAYYPRADRSLDEKDVLGPFLSQFYEDKP 353

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
           CP  ILLS E EE  L+  +  ++ GYKV+I+ PK+GEKR +++ AL NA  +  +KL+ 
Sbjct: 354 CPRLILLSHEVEEQDLIAEALSQKAGYKVEISAPKRGEKRDLVDHALQNAREALGRKLAE 413

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +   +L      F L   P+RIE+YDNSHIMG +AVG M+V G  GF K+QYRKFN+ 
Sbjct: 414 TATQGKLLDGVAAAFKLEKPPQRIEVYDNSHIMGTNAVGGMIVAGPEGFRKSQYRKFNIK 473

Query: 419 PNDVKTQDDCAMMRMV------------------------------------------LE 436
             D+   DD  MMR V                                           E
Sbjct: 474 SADLVPGDDYGMMREVLRRRFSRLLREAPRGGAAPAVAPLAPAPTDLPAPPPAPTAAAQE 533

Query: 437 RRFSQLIKNEENLNFHPKKQEYSF--------PSWPDVVILDGGKGQLSAAQGVLKKLNV 488
              ++    E  ++  P     +           WPD+V++DGG GQL+AA+ V+ +L +
Sbjct: 534 TWRTRGEPGEIPVDPAPLPPTPAEVQEAADEASPWPDLVLIDGGLGQLNAARAVMDELGI 593

Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
            + + ++ IAKG  R AG E+FF+   +   +  RDP+LYFIQRLRDEAHRFAI +HR R
Sbjct: 594 TD-VPMVGIAKGLDREAGREQFFIPGQQPFRMEPRDPVLYFIQRLRDEAHRFAIGSHRAR 652

Query: 549 RKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           RKK      L  I G+GP RKR LL+ FGT+K I R+S   L  + G++   A  IY +F
Sbjct: 653 RKKDISDAGLQAIPGVGPTRKRALLRHFGTLKAIERASLADLEQVPGVNASTARAIYEYF 712

Query: 608 H 608
           H
Sbjct: 713 H 713


>gi|297184225|gb|ADI20343.1| nuclease subunit of the excinuclease complex [uncultured alpha
           proteobacterium EB080_L27A02]
          Length = 625

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/610 (44%), Positives = 376/610 (61%), Gaps = 14/610 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+ML+  G VLYVGKA NL++R+ SY     H+ RI  MIS  +++ F  
Sbjct: 23  LKTLDGSPGVYRMLNQDGEVLYVGKARNLKRRVSSYAKPTGHSARIGRMISNTSSMMFLT 82

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+LKPR+N+LLRDDKSFP I+I+  H+ P + KHR   +    YF
Sbjct: 83  TQTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNIMISSSHEFPKIAKHRGRRSKGSEYF 142

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPFASV +V +T++ LQR F LR+C DS F  RTR CL +QI RCSGPC G+ISS  Y +
Sbjct: 143 GPFASVTSVNRTLHHLQRIFLLRTCTDSDFSSRTRACLQYQIARCSGPCVGKISSNNYNQ 202

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            V +A+KFL G +  ++E +A+ M +A+    +E A   RDR+ AL+++Q+         
Sbjct: 203 LVDDARKFLQGKSTKIQESMAKEMAEASRDLQFEKAASLRDRIRALTNVQSSQGINPQTV 262

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           N  D  SLY   + ACIQ  F    QN G   F+ +  S +   +++  FL QFY +K  
Sbjct: 263 NEADIVSLYMEGDQACIQVFFIRANQNWGNRAFYPRNTSGADADEVMESFLAQFYDNKTP 322

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ IL+S       LL  +   + G KV+I  PK+GE+ +++  A  NA  S  +K+S  
Sbjct: 323 PKLILVSCTVSNLDLLVDALSSKRGNKVEIIQPKRGERAELVFNAERNARESLARKMSES 382

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +   +LK  +  F+L +IPKRIE+YDNSHI G  AVG M+  G +G++K+ YRK+N+  
Sbjct: 383 ATQAKLLKGVSDAFSLENIPKRIEVYDNSHIQGAFAVGAMIASGPDGYMKSSYRKYNIRY 442

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            D    DD  MM+ VLERRF  LIK +          +    +WPD++++DGG GQ+SA 
Sbjct: 443 EDTVAGDDFGMMKEVLERRFKSLIKED---------PDKKTENWPDLLLIDGGAGQVSAV 493

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             +L +L + N +  + +AKG  R  G E+F  K      L   DP+LYFIQRLRDEAHR
Sbjct: 494 AEILTELGI-NDVPFVGVAKGIDRDQGKEEFHCKGKPVFALQRNDPVLYFIQRLRDEAHR 552

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAITTHR +R KA   + LDE+ G+G  RKR +L  FG+ K  SR+S + L ++EG+S K
Sbjct: 553 FAITTHRAKRSKAIGITTLDEVPGVGAARKRAILAHFGSAKSASRASLKDLKAVEGLSSK 612

Query: 599 IACKIYNHFH 608
           +A  IY+ +H
Sbjct: 613 MAQIIYDFYH 622


>gi|218768346|ref|YP_002342858.1| excinuclease ABC subunit C [Neisseria meningitidis Z2491]
 gi|11278017|pir||G81845 excinuclease ABC subunit C NMA1540 [imported] - Neisseria
           meningitidis (strain Z2491 serogroup A)
 gi|121052354|emb|CAM08686.1| excinuclease ABC subunit C [Neisseria meningitidis Z2491]
          Length = 628

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 219/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQILQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSNQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPD V++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 612 VEGISKALAETIYEHLH 628


>gi|258517046|ref|YP_003193268.1| excinuclease ABC subunit C [Desulfotomaculum acetoxidans DSM 771]
 gi|257780751|gb|ACV64645.1| excinuclease ABC, C subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 624

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 213/625 (34%), Positives = 334/625 (53%), Gaps = 23/625 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P  PGVY   D+AG ++YVGKA +L+ R++SY  S+ N T ++  M+ +I ++ +
Sbjct: 6   KLQYLPAKPGVYIYRDMAGEIIYVGKAVSLKNRVRSYFQSSANLTPKVRAMVPKIADLEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +EVEAL+LE+N+IK  +PR+N+ L+DDKS+PY+ IT     P +Y  R        
Sbjct: 66  IVTDSEVEALILESNLIKEHRPRYNVFLKDDKSYPYLKITLNEDFPRVYITRRVIKDGAR 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+  V AV +T+  L++ F  R+C       R RPCL   IKRC GPC G    ++Y
Sbjct: 126 YFGPYTRVGAVHETLRLLKKLFPFRTCKQKEPPVRDRPCLNHYIKRCLGPCCGLTGKQEY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            + V E   FL G   +L + + + M +A     +E A   RD+L A++ +      ++ 
Sbjct: 186 RKAVDEICLFLEGRQEDLVKHLKKRMEEAAEALRFEQAAELRDQLRAVNEVMEKQKIVFA 245

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++    +  C+   F   G+  G   + L+   +    ++++ F++Q+Y   
Sbjct: 246 GPEDRDVVAMARGISETCVMIFFIRGGKLTGREHYLLQGTEDMDRREVVTAFIKQYYHQA 305

Query: 298 P-CPENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------- 348
              P  +LL    EE  +++     ++ G +V + VPK+GEKR ++E A  NA       
Sbjct: 306 DFLPREVLLPGMVEEEAAVISRWLSEKKGSRVNLRVPKRGEKRGLLEMAEKNALLLLDQI 365

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
            +        + + +  L +      L   P R+E YD S+  G   V  MVV       
Sbjct: 366 EQEKLSARQDKDNLEAALGELAGALGLAKPPYRLECYDISNTQGTETVASMVVFEAGRPQ 425

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVV 467
           K+QYR+F +    V   +D A M+ V+ RRF +  +  E +N      +E  F   PD V
Sbjct: 426 KDQYRRFKIKT--VDGPNDFASMQEVIGRRFKRGKEERELINTGQLSTKEAKFHRLPDCV 483

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           I+DGGKGQLSAA+ V+++L     I    +AK  +       F   + E + L      L
Sbjct: 484 IIDGGKGQLSAARSVMQELGFA-HIPAFGLAKQEEL-----LFKEGEKEPVFLPRDSHAL 537

Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           Y +QRLRDEAHRFA+T HR+ R K    S LDE++GIGP R+R LL++FG+++ ISR+  
Sbjct: 538 YLVQRLRDEAHRFAVTYHRQLRSKRNLKSLLDEVDGIGPKRRRELLKAFGSLEDISRAGL 597

Query: 587 ETLASIEGISKKIACKIYNHFHKNT 611
             L+++EG++KK A  +YN+FH+  
Sbjct: 598 GELSAVEGMNKKAAEAVYNYFHQKE 622


>gi|85707930|ref|ZP_01038996.1| excinuclease ABC subunit C [Erythrobacter sp. NAP1]
 gi|85689464|gb|EAQ29467.1| excinuclease ABC subunit C [Erythrobacter sp. NAP1]
          Length = 653

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 255/610 (41%), Positives = 359/610 (58%), Gaps = 10/610 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +   PGVY+MLD  G VLYVGKA +L+ R+ +Y   N  T R+  M+SQ  ++    T
Sbjct: 46  KTLKPVPGVYRMLDARGDVLYVGKARSLKARVANYTQVNQLTTRLMRMVSQCRSMEIVTT 105

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EALLLEA +IKR +P FN+LLRDDKSFP+IL+   H+ P ++KHR +   +G+Y+G
Sbjct: 106 NSEAEALLLEAQLIKRFRPPFNVLLRDDKSFPFILLRADHEFPRIHKHRGARRAKGNYYG 165

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  +V  T+N+LQ+ F LRSC DS F +R RPCLL+QIKRCS PC   IS E Y   
Sbjct: 166 PFASAGSVNTTLNALQKLFLLRSCTDSFFNNRDRPCLLYQIKRCSAPCVDRISVEDYDAL 225

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V +AK FL+G +  ++  + + M +A  + D+E+A I RDRL A + IQ           
Sbjct: 226 VSQAKDFLAGKSSQVQADLEKQMAKAAEELDFETAAILRDRLRAATFIQGSQAINAKAVG 285

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+L       C+Q  F   GQN G   FF     +   AQ+L+  + QFY + P P
Sbjct: 286 DADVFALAAKGGQICVQAFFIRGGQNWGHRAFFPSHTKDVGEAQVLADVMLQFYEEVPPP 345

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +L+  +  E  L+E +  +    KV+I++P++G++RK++ QA  NA  +  ++L+   
Sbjct: 346 PMVLVDRDLPEGELMEAALTEIADKKVQISIPQRGDRRKLMAQASRNAVDALDRRLAETG 405

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   + ++  +   L   P+RIE+YDNSHI G  AVG MVV    GF K+QYRKFN+   
Sbjct: 406 TKAKVNRELAEFLELGEPPERIEVYDNSHIQGAKAVGAMVVASPEGFEKSQYRKFNIREA 465

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
                DD  MMR V+ RRF  L    EN +    K+      WPD+V++DGGKGQ+S+  
Sbjct: 466 QT--NDDFGMMREVMRRRFRNL---AENPDGESGKKNSHETIWPDLVLIDGGKGQVSSVM 520

Query: 481 GVLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
            VL++L + + + ++ IAKGP     G E F    G    L    P+L++ QRLRDE HR
Sbjct: 521 EVLEELGIADEVPVVGIAKGPHHGREGREVFHFPDGREKTLPTNSPVLFYAQRLRDEVHR 580

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           + I  HR +R KA   SPLDEI GIGP RKR LL  FGT   +  ++ E L    G+S  
Sbjct: 581 YVIGAHRAKRSKAITASPLDEIPGIGPARKRALLLHFGTASKVRAAALEDLQRAPGVSDA 640

Query: 599 IACKIYNHFH 608
           +A KIY+ +H
Sbjct: 641 VARKIYDFYH 650


>gi|307822420|ref|ZP_07652652.1| excinuclease ABC, C subunit [Methylobacter tundripaludum SV96]
 gi|307736986|gb|EFO07831.1| excinuclease ABC, C subunit [Methylobacter tundripaludum SV96]
          Length = 613

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 220/615 (35%), Positives = 335/615 (54%), Gaps = 21/615 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PG+Y+M +  G ++Y+GKA NL+ R+ SY      + +   M+++I NI  TV
Sbjct: 16  LKNLTTRPGIYKMFNDQGEIIYIGKAKNLKNRVSSYFKKQTASTKQQAMVARIANIEVTV 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE   IKR KPR+NI LRDD+S+PYI ++ +H  P +  HR +   +G YF
Sbjct: 76  THTEGEALLLECQQIKRHKPRYNICLRDDRSYPYIFLSSEHDFPQITLHRGAKKRKGKYF 135

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+  + A+++++  LQR F +R C DS++ +R+RPCL  QI+RC+ PC G I    Y +
Sbjct: 136 GPYPGIGAIKESLKLLQRIFPIRQCDDSIYNNRSRPCLQHQIERCTAPCVGLIDKAAYAQ 195

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            V     FL G    L +++   M QA  K +YE A   RD++  L  +   +       
Sbjct: 196 DVDSTVLFLEGKGGLLIDQLIVKMEQAAAKLEYERAAGFRDQILKLRSVLEKHFVHGERG 255

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
            +D  +      +AC+Q  F   GQ+ G   FF K   E   A I+  F+ Q+Y DK  P
Sbjct: 256 DVDIIACATKAGVACVQVFFIRNGQHLGNKVFFPKITDEHDPAAIVQAFIPQYYLDKQVP 315

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +++S + EE  LL      Q  + V I+   +GE+ K ++ A  NA  S   KLS + 
Sbjct: 316 HELIVSHQPEEAELLMEVLAVQAKHAVAISHNVRGERLKWLQMACTNAENSLLSKLSDKQ 375

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
                     ++     +PKR+E +D SH  G   V   VV    G VK+ YR+FN+   
Sbjct: 376 GIYARFLSLQEELGCTELPKRLECFDISHTQGDQTVASCVVFDREGPVKSAYRRFNIEG- 434

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A +   + RRF +L + E               + PD++++DGGKGQ+  AQ
Sbjct: 435 -ITGGDDYAAIHQAVFRRFKRLKQGE--------------HTAPDILLIDGGKGQVHEAQ 479

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHR 539
             L +L++ N + I+ ++KGP R  GMEK  +   E  + +      L  IQ +RDEAHR
Sbjct: 480 KALAELDI-NNVMIVGVSKGPDRKPGMEKLILVDQEQPIDIKPGASGLLLIQHIRDEAHR 538

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR+RR KA   S ++ I G+GP R+++LL+ FG ++ IS++  + L S++GIS+ 
Sbjct: 539 FAITGHRQRRGKAKKQSAMEAIPGLGPKRRQILLKQFGGLQGISQAGVDALCSVDGISRH 598

Query: 599 IACKIYNHFHKNTSH 613
           +A +IY  FH    +
Sbjct: 599 LAQRIYELFHHQDDN 613


>gi|304387362|ref|ZP_07369554.1| excision endonuclease subunit UvrC [Neisseria meningitidis ATCC
           13091]
 gi|304338613|gb|EFM04731.1| excision endonuclease subunit UvrC [Neisseria meningitidis ATCC
           13091]
          Length = 628

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 221/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G I+ E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRARPCLLYQIKRCTAPCVGHINEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RCLQQSSQQHRIDELAKILNMNSDDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 612 VEGISKALAETIYEHLH 628


>gi|295688387|ref|YP_003592080.1| excinuclease ABC, C subunit [Caulobacter segnis ATCC 21756]
 gi|295430290|gb|ADG09462.1| excinuclease ABC, C subunit [Caulobacter segnis ATCC 21756]
          Length = 634

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 270/618 (43%), Positives = 380/618 (61%), Gaps = 23/618 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P+ PGVY+M+     VLYVGKA +L+KR+  Y     HT+RI HM+    ++ F  T 
Sbjct: 26  RLPDAPGVYRMIGEGDEVLYVGKAKSLKKRVIQYAQGRFHTNRIAHMVDATRSMEFVTTR 85

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK LKPRFN+LLRDDKSFP I+I   H  P L KHR + TI+G YFGP
Sbjct: 86  TEADALLLEINLIKSLKPRFNVLLRDDKSFPEIVIRRDHDAPQLRKHRGAHTIKGDYFGP 145

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +T+N+LQ+ F LRSC+DSV+  R RPC+L QIKRC+ PCTG I  + Y   V
Sbjct: 146 FASAWAVNRTLNTLQKAFLLRSCSDSVYETRDRPCMLHQIKRCAAPCTGLIGKDDYQALV 205

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            +A+ FL G +  +   +A+ M  A    ++E A   RDR+ ALS +             
Sbjct: 206 DQAEAFLRGKSRAVIASMAKQMEDAAEDLEFERAARLRDRIRALSSVAQETQINPETVEE 265

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292
            D  +L+     AC+Q  FF  GQN G   +F +    +  ++         I++ FL Q
Sbjct: 266 ADVVALHVEGGQACVQVFFFRAGQNWGNRAYFPRITGAADESEEEGVTEEQRIITAFLGQ 325

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
           FY DKP P  IL + +  E+ LL  +F  + G KV+I+VPK+GEK  +++ AL NA  + 
Sbjct: 326 FYDDKPIPRLILANIQPAESELLSEAFALKSGRKVEISVPKRGEKADLVQHALTNAKEAL 385

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +K++   +   +L    + F L   P+RIE+YDNSHI G +AVG M+V G  GF+K QY
Sbjct: 386 GRKMAESGAQTKLLAGVCEAFKLEASPERIEVYDNSHIQGTNAVGGMIVAGPEGFMKGQY 445

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RKFN+   ++   DD  MM+ VL RRF++L+K EE  +   +         PD+V++DGG
Sbjct: 446 RKFNIKSTELTPGDDYGMMKEVLRRRFARLVKEEEEGDSENR---------PDLVLVDGG 496

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQL AA  ++  L V++ I ++ +AKGP R AG+E+FF+      +L  + P+LY++QR
Sbjct: 497 KGQLDAALEIMADLGVDD-IAVVGVAKGPDRDAGLERFFLPGQPPFMLEPKSPVLYYLQR 555

Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFAI  HR RR      +PLDEI G+GP RK+ LL +FG+ K + R+S E L  
Sbjct: 556 LRDEAHRFAIGAHRTRRSMDLKKNPLDEIEGVGPGRKKALLHAFGSAKGVGRASVEDLVK 615

Query: 592 IEGISKKIACKIYNHFHK 609
           +EG+S+ +A +I+  F K
Sbjct: 616 VEGVSQALAERIHGFFRK 633


>gi|24212618|sp|Q9JU21|UVRC_NEIMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 617

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 219/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 17  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 76

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 77  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 135

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 136 GPYPNSNAVRDSIQILQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 195

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 196 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 255

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 256 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 315

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 316 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 373

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 374 RRLQQSNQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 433

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPD V++DGGK
Sbjct: 434 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 482

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 483 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 540

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 541 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 600

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 601 VEGISKALAETIYEHLH 617


>gi|56478596|ref|YP_160185.1| excinuclease ABC subunit C [Aromatoleum aromaticum EbN1]
 gi|81356713|sp|Q5P080|UVRC_AZOSE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56314639|emb|CAI09284.1| Excinuclease ABC subunit C [Aromatoleum aromaticum EbN1]
          Length = 602

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 213/608 (35%), Positives = 317/608 (52%), Gaps = 25/608 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY+M+    RVLYVGKA NL++R+ SY      + RI  M++QI  +  T T 
Sbjct: 16  TVPEEPGVYRMIGADERVLYVGKAKNLKRRVSSYFQRTQPSPRIAMMVAQILRVDITPTR 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDK++PYI ++     P L  HR + T    YFGP
Sbjct: 76  SEAEALLLENNLIKSLAPRYNILFRDDKTYPYIELSGDE-FPRLAYHRGAFTKGARYFGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V AV ++I+ LQ+TF LR+C + VF++R+RPCLL QIKRC+ PC G I  E Y   V
Sbjct: 135 FPNVWAVRESIHLLQKTFRLRTCENPVFQNRSRPCLLHQIKRCTAPCVGLIDKEAYAADV 194

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + + +   M+ A  +  +E A   RD++  L  +         +   
Sbjct: 195 RLAARFLEGRASEVIDDLTARMHAAAERLAFEEAAACRDQVRVLQAVLARQFVDSRKDED 254

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +     ++ C+       G++ G    F    +          F+ Q Y +   P 
Sbjct: 255 VDIIAAVEEGSVTCVNIAMVRGGRHLGDRPQFPSATAGIGMLDAALAFIEQHYREHELPA 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +L+        +L     +       + VP+   ++  +  A  NA  +   +      
Sbjct: 315 KLLVDVPLAPVRVL---MDEICDKPCTLLVPRLQAEKVWMGMAENNARLAIIARARDTGR 371

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +M L+   +   L   P+RIE +D SH MG + V   VV  +     ++YR++N+    
Sbjct: 372 AEMRLEALRETLDLAEAPRRIECFDISHTMGEATVASCVVSVDGAMKNSEYRRYNI--TG 429

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A MR VLERR+ ++   E                 PD++++DGGKGQ+S+A+ 
Sbjct: 430 ITPGDDFAAMRQVLERRYGKVAAGE--------------GVCPDLILIDGGKGQVSSARS 475

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           VL  + +E  I ++ +AKG +R  G+E      G    L +  P L+ IQ +RDEAHRFA
Sbjct: 476 VLADVGLE-SIAMVGVAKGEERKPGLETLVFPDGRMQNLAIDHPALHLIQEIRDEAHRFA 534

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR RR KA   S L++I GIGP+R+R LL SFG +  +  ++ E L  + G+S+K A
Sbjct: 535 ITGHRARRAKARIGSRLEDIPGIGPMRRRNLLASFGGLDGVRAATVEDLCRVGGVSRKTA 594

Query: 601 CKIYNHFH 608
             IYN  H
Sbjct: 595 EAIYNALH 602


>gi|240013906|ref|ZP_04720819.1| excinuclease ABC subunit C [Neisseria gonorrhoeae DGI18]
 gi|240121475|ref|ZP_04734437.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID24-1]
 gi|240125959|ref|ZP_04738845.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-92-679]
 gi|268684551|ref|ZP_06151413.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-92-679]
 gi|268624835|gb|EEZ57235.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-92-679]
          Length = 628

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 224/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKTLSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL------SHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD++ AL        I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSDQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  + TQ
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|59801009|ref|YP_207721.1| excinuclease ABC subunit C [Neisseria gonorrhoeae FA 1090]
 gi|240128470|ref|ZP_04741131.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-93-1035]
 gi|268686861|ref|ZP_06153723.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-93-1035]
 gi|293398872|ref|ZP_06643037.1| excinuclease ABC, C subunit [Neisseria gonorrhoeae F62]
 gi|59717904|gb|AAW89309.1| putative excinuclease ABC subunit C [Neisseria gonorrhoeae FA 1090]
 gi|268627145|gb|EEZ59545.1| excinuclease ABC subunit C [Neisseria gonorrhoeae SK-93-1035]
 gi|291610286|gb|EFF39396.1| excinuclease ABC, C subunit [Neisseria gonorrhoeae F62]
          Length = 628

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  + TQ
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|329940820|ref|ZP_08290100.1| excinuclease ABC subunit C [Streptomyces griseoaurantiacus M045]
 gi|329300114|gb|EGG44012.1| excinuclease ABC subunit C [Streptomyces griseoaurantiacus M045]
          Length = 681

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 193/635 (30%), Positives = 315/635 (49%), Gaps = 32/635 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           Q+P+ PGVY+  D   RV+YVGKA +L++R+ +Y     N   R   M++   ++ +TV 
Sbjct: 13  QIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLANLHPRTRSMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R        YFG
Sbjct: 73  STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKKKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+  T++ L R F +R+C+  VF++     RPCLL  I +CS PC   IS+E +
Sbjct: 133 PYAHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVERISAEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E   E   F++G       ++   M +A    +YE A   RD + AL      N  +  
Sbjct: 193 RELAEEFCDFMTGRTGTYIRRLEARMAEAAEDMEYERAARLRDDIGALKKAMEKNAVVLA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++  ++  A +Q      G+ RG   +      + T   ++ + L+Q Y ++
Sbjct: 253 DATDADLVAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEDITTGALVEHALQQLYGEE 312

Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ +L+    E    ++     + G  V + VP++G+K+ ++E    NA ++   
Sbjct: 313 TGDSVPKEVLVPALPEPVEPVQEWLTTRRGAHVSLRVPQRGDKKSLMETVQRNAQQALVL 372

Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             +   S        L++  +   L   P RIE YD SH+ G   V  MVV  +    K+
Sbjct: 373 HKTKRASDLTTRSRALEEIAEALGLDSAPLRIECYDISHLQGEDVVASMVVFEDGLQRKS 432

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF---------HPKKQEYSFP 461
           +YR+F +     + QDD   M  VL RRF + + ++E                 +   F 
Sbjct: 433 EYRRFQIRG--FEGQDDVRSMHEVLGRRFRRYLADKEKTGEWSDGEAALTEEDGRPKRFA 490

Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521
             P +V++DGG+ Q++AAQ  L +L +++ I +  +AK  +     E +   + + +VL 
Sbjct: 491 YPPQLVVVDGGQPQVAAAQRALDELGIDD-IAVCGLAKRLE-----EVWLPGEDDPVVLP 544

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKM 580
                LY +QR+RDEAHRFAIT  R +R K   S PLD++ G+G  RK+ L++ FG+VK 
Sbjct: 545 RTSEGLYLLQRIRDEAHRFAITYQRTKRAKRLRSGPLDDVPGLGETRKQALIKHFGSVKR 604

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           +  ++ + +  + GI +K A  I     ++    P
Sbjct: 605 LRAATLDQIQEVPGIGRKTAETIAVALARSAPAAP 639


>gi|285018580|ref|YP_003376291.1| excinuclease ABC subunit c protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473798|emb|CBA16301.1| putative excinuclease abc subunit c protein [Xanthomonas
           albilineans]
          Length = 619

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 228/607 (37%), Positives = 342/607 (56%), Gaps = 17/607 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M      +LYVGKA  L+KR+ SY  ++    R   M++Q+  +  TVT 
Sbjct: 17  NLSTAPGVYRMYAADDTLLYVGKAGALRKRVSSYFSASPKNARTMTMLAQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T +   P +  HR    + G YFGP
Sbjct: 77  SEGEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVPGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC   +++++Y E V
Sbjct: 136 YPGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVALVAADEYAEAV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E++ + M  A+ + ++E A   RD L+AL  +Q           +
Sbjct: 196 RRAMLFLDGRSDQLGEELVQAMQMASERLEFERAARLRDLLSALRSMQTRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +       AC+    F  G+N GT TFF KT+ E + A++L  F+ Q+Y + P P  
Sbjct: 256 DVLACATQGAHACVLLLAFRDGRNLGTRTFFPKTNGEDSAAEVLGAFVSQYYAEHPPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +LL  E  + +L+E +       K+++    +GE+   +E A  NA  S   +LS+  + 
Sbjct: 316 VLLDREIADAALIEAALSSAAERKIQLKWNVRGERAGYLELASRNAQASLVSELSSYQAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V++QYR++N+  + +
Sbjct: 376 HARSEALREMLELEEPVKRVECFDISHTMGEATVASCVVFDASGPVRSQYRRYNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           +  DD A MR  +ERRF + ++ E            + P  PDV+++DGG GQL+ A   
Sbjct: 434 EPGDDYAAMRQAIERRFRRALEGE----------VKTEPVLPDVLLIDGGAGQLAQASAA 483

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VE  + +I +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 484 LIALGVEG-VRLIGVAKGVERRAGHETLVMPDGRELRPGAASPALQFIQQVRDEAHRFAI 542

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A ++GI+  +A 
Sbjct: 543 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLAGLKAAGEAEIARVDGINDALAA 602

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 603 RIYANLH 609


>gi|308389444|gb|ADO31764.1| excinuclease ABC subunit C [Neisseria meningitidis alpha710]
 gi|325130436|gb|EGC53200.1| excinuclease ABC, C subunit [Neisseria meningitidis OX99.30304]
 gi|325136171|gb|EGC58779.1| excinuclease ABC, C subunit [Neisseria meningitidis M0579]
 gi|325201964|gb|ADY97418.1| excinuclease ABC, C subunit [Neisseria meningitidis M01-240149]
 gi|325208285|gb|ADZ03737.1| excinuclease ABC, C subunit [Neisseria meningitidis NZ-05/33]
          Length = 628

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 224/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  + +G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPNLPGVYRFFNESGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSESEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRCS PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCSAPCVGHISEEDYHD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVREASTFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  + C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+ I++S      +L E    + +G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD-IIISNFPMPDALKEALESE-HGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLMRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 612 VEGISKALAETIYEHLH 628


>gi|194098903|ref|YP_002001968.1| excinuclease ABC subunit C [Neisseria gonorrhoeae NCCP11945]
 gi|240113165|ref|ZP_04727655.1| excinuclease ABC subunit C [Neisseria gonorrhoeae MS11]
 gi|254493957|ref|ZP_05107128.1| excinuclease ABC subunit C [Neisseria gonorrhoeae 1291]
 gi|268599244|ref|ZP_06133411.1| excinuclease ABC subunit C [Neisseria gonorrhoeae MS11]
 gi|193934193|gb|ACF30017.1| excinuclease ABC subunit C [Neisseria gonorrhoeae NCCP11945]
 gi|226512997|gb|EEH62342.1| excinuclease ABC subunit C [Neisseria gonorrhoeae 1291]
 gi|268583375|gb|EEZ48051.1| excinuclease ABC subunit C [Neisseria gonorrhoeae MS11]
          Length = 628

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 224/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL------SHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD++ AL        I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSDQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  + TQ
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|161870201|ref|YP_001599371.1| excinuclease ABC subunit C [Neisseria meningitidis 053442]
 gi|161595754|gb|ABX73414.1| excinuclease ABC subunit C [Neisseria meningitidis 053442]
          Length = 628

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 221/617 (35%), Positives = 338/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N+IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  + C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|240016347|ref|ZP_04722887.1| excinuclease ABC subunit C [Neisseria gonorrhoeae FA6140]
 gi|240080467|ref|ZP_04725010.1| excinuclease ABC subunit C [Neisseria gonorrhoeae FA19]
 gi|240118219|ref|ZP_04732281.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID1]
 gi|240123768|ref|ZP_04736724.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID332]
 gi|268596604|ref|ZP_06130771.1| excinuclease ABC subunit C [Neisseria gonorrhoeae FA19]
 gi|268603930|ref|ZP_06138097.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID1]
 gi|268682393|ref|ZP_06149255.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID332]
 gi|268550392|gb|EEZ45411.1| excinuclease ABC subunit C [Neisseria gonorrhoeae FA19]
 gi|268588061|gb|EEZ52737.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID1]
 gi|268622677|gb|EEZ55077.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID332]
          Length = 628

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKIFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  + TQ
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|325204325|gb|ADY99778.1| excinuclease ABC, C subunit [Neisseria meningitidis M01-240355]
          Length = 628

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 225/617 (36%), Positives = 338/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQILQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  + C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+ I++S      +L E    + +G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD-IIISNFPMPDALKEALESE-HGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L EI GIG  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSEIPGIGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 612 VEGISKALAETIYEHLH 628


>gi|225175308|ref|ZP_03729303.1| excinuclease ABC, C subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225169060|gb|EEG77859.1| excinuclease ABC, C subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 620

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 213/615 (34%), Positives = 325/615 (52%), Gaps = 17/615 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
           ++P  PGVY M D  G+++YVGKA +L++R++SY  S    + ++  ++ +I ++ +TVT
Sbjct: 13  RLPRRPGVYLMKDQRGKIIYVGKAVDLRQRVRSYFQSAQKLSPKVRALVEKIADLDYTVT 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL+LE+N+IK  KPR+NI L+DDK +PY+ +T +   P ++  R        YFG
Sbjct: 73  DTEVEALILESNLIKEYKPRYNIDLKDDKHYPYLRVTVQEPFPRIHVARRVEKDGARYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           P+ +  AV +TI  ++R F LR C          RPCL   I RC  PC GE+  E+Y +
Sbjct: 133 PYTNAGAVRETIRLIRRLFPLRHCRGPVDPAKSGRPCLNRHIDRCLAPCDGEVGEEEYRK 192

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239
            V E   FL G    L  ++A  M +A    ++E A   RD+  A+  I+          
Sbjct: 193 LVDEVLLFLEGKQDRLLHELAARMEEAAQNLEFEKAARLRDQYQAVEAIREKQKIALTEG 252

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-P 298
              D  +L   ++L C Q      G+  G   F L   +    A++L+ FLR++YT    
Sbjct: 253 GDRDIIALAAGEDLGCAQLFAVRGGKLTGREHFLLTNPTGEDEAEMLAAFLRRYYTHAGE 312

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  ILLS E  + +LLE     + G +V+I VP++G K+ +   AL NA     Q++  
Sbjct: 313 IPPEILLSGEIPDAALLEEWLRGKRGGRVRIHVPQRGAKKDLARMALDNAAMFLEQEVLR 372

Query: 359 E--ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           +     Q  L+  T+  +L   P RIE YD SH+ G   V  MVV        + YR+F 
Sbjct: 373 QRARDPQAALRALTEALSLEEPPCRIEGYDISHLHGEGTVAAMVVFENGVAKPSDYRRFR 432

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    V   DD A MR  L RRF++L    +     P+  E  F   PD++++DGG GQL
Sbjct: 433 VRS--VDKPDDYASMRETLSRRFARLAALRD-AGEPPENMEDPFLLVPDLILIDGGIGQL 489

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           +AA+  +++    N + +IS+AK  +       F   + E L L      L  +QR+RDE
Sbjct: 490 NAARQAMEEAG-YNDVPMISLAKEEEL-----VFVTGRREPLRLPRNSAALQLLQRVRDE 543

Query: 537 AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           AHRF IT  RKRR     S L ++ GIG  R++ LL+ FG++  + R+S E LA +EG++
Sbjct: 544 AHRFVITYQRKRRPGVRGSLLLDVPGIGEARRKALLKHFGSIAEMRRASVEQLAEVEGMN 603

Query: 597 KKIACKIYNHFHKNT 611
           + +A  +Y +  +  
Sbjct: 604 EAVAATLYEYLREED 618


>gi|119370544|sp|Q5F928|UVRC_NEIG1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 617

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 17  LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 76

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 77  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 135

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 136 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 195

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 196 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 255

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 256 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 315

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  + TQ
Sbjct: 316 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 373

Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 374 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 433

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 434 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 482

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 483 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 540

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 541 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 600

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 601 VEGISKALAETIYNHLH 617


>gi|317164475|gb|ADV08016.1| excinuclease ABC subunit C [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 628

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  + TQ
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|239996121|ref|ZP_04716645.1| excinuclease ABC subunit C [Alteromonas macleodii ATCC 27126]
          Length = 605

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 207/614 (33%), Positives = 332/614 (54%), Gaps = 25/614 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA NL+KR+ SY  SN    +   ++SQI N+  TV
Sbjct: 10  LKNLTSQPGVYRMYNSQEEVIYVGKAKNLKKRVSSYFRSNLDNAKTRSLVSQIANMDVTV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E EA LLE N IK+ KPR+N+++RDDKS+P+I ++  H+ P L  HR     +G YF
Sbjct: 70  VNSETEAFLLENNFIKKYKPRYNVVMRDDKSYPFIFLS-DHEHPRLSFHRGPQKKKGEYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181
           GP+ S  +V +++ S+QR F +R C DS +R R+RPCL +Q++RCS PC    +S E+Y 
Sbjct: 129 GPYPSAWSVRESLRSMQRIFPVRQCEDSYYRARSRPCLQYQMQRCSAPCVEGYVSDEEYK 188

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
           E V+ A+ FL G N  +   +   M  A+   ++E+A  +RD++ AL  +Q         
Sbjct: 189 EQVNFARLFLKGKNQQVIGGLVEKMEAASEALNFEAAARYRDQINALRKVQERQWVAGTQ 248

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DK 297
           + MD F      N+ACIQ  F   GQ  G+  +F K  + +   ++   F  QFY   +K
Sbjct: 249 DEMDVFGFAFKGNMACIQVMFIREGQLLGSKAYFPKVPNTADEQEVFESFFLQFYLAGNK 308

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I+LS    +   +      + G+KV+     + EKRK ++ A  NA  +   + S
Sbjct: 309 VIPKQIVLSNTLTDEDAIADVLASEAGHKVQFFKGAREEKRKYLQLAQSNAQTALDAQYS 368

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + S      D      +    +R+E +D SH  G   V   VV    G  K+ YR++N+
Sbjct: 369 QQKSVFARYLDLEAALEVDTPIQRMECFDISHTSGQQTVASCVVFNREGPHKSDYRRYNI 428

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M   L+RR+  + + ++                PD++++DGGKGQL+
Sbjct: 429 EG--ITPGDDYAAMAQALKRRYKSVKEVQK---------------IPDLLLIDGGKGQLA 471

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDE 536
            A+   +    + +  ++ +AKG  R  G+E   +    + L ++   P L+ IQ +RDE
Sbjct: 472 QAEAFFEDWPHDKKPMLLGVAKGTTRKPGLETLILAGSHQVLPMDSHSPGLHLIQHIRDE 531

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           +HRFAIT HR RR+K    S L+ I GIG  R++ LL+  G ++ + ++S + ++++ GI
Sbjct: 532 SHRFAITGHRNRRQKVKTTSSLESIPGIGAKRRQTLLKFMGGLQGLKKASKDEISNVPGI 591

Query: 596 SKKIACKIYNHFHK 609
           S ++A  IY+H H+
Sbjct: 592 SPELAETIYDHLHQ 605


>gi|240115922|ref|ZP_04729984.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID18]
 gi|268601591|ref|ZP_06135758.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID18]
 gi|268585722|gb|EEZ50398.1| excinuclease ABC subunit C [Neisseria gonorrhoeae PID18]
          Length = 628

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 224/617 (36%), Positives = 337/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL------SHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD++ AL        I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSDQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  + TQ
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVITASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|294669354|ref|ZP_06734433.1| excinuclease ABC subunit C [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308764|gb|EFE50007.1| excinuclease ABC subunit C [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 659

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 221/617 (35%), Positives = 334/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 59  LKNLPNLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 118

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 119 TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 177

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 178 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 237

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 238 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 297

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 298 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 357

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 358 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 415

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 416 RRLQQSSQQHRIDELAKILNMNSDDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 475

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 476 RYNISTA--KPGDDYAAMREVLTRRYGKMQEAEANGEA---------VKWPDVVLIDGGK 524

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 525 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGETFRLPPNSPALHLLQT 582

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 583 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 642

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 643 VEGISKALAETIYEHLH 659


>gi|260440264|ref|ZP_05794080.1| excinuclease ABC subunit C [Neisseria gonorrhoeae DGI2]
 gi|291043558|ref|ZP_06569274.1| excinuclease ABC subunit C [Neisseria gonorrhoeae DGI2]
 gi|291012021|gb|EFE04010.1| excinuclease ABC subunit C [Neisseria gonorrhoeae DGI2]
          Length = 628

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEVGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKTLSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  + TQ
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|298368881|ref|ZP_06980199.1| excinuclease ABC subunit C [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282884|gb|EFI24371.1| excinuclease ABC subunit C [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 613

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 222/617 (35%), Positives = 336/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 13  LKNLPNLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 72

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 73  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 131

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 132 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 191

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 192 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 251

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 252 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 311

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+ I+ +        L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 312 LGKSKPDIIISNFTVP--DALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 369

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 370 RRLQQSSQQHRIDELAKILNMNSDDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 429

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 430 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 478

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 479 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGETFRLPPNSPALHLLQT 536

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 537 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 596

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A KIY + H
Sbjct: 597 VEGISKALAEKIYEYLH 613


>gi|114331403|ref|YP_747625.1| excinuclease ABC, C subunit [Nitrosomonas eutropha C91]
 gi|122313779|sp|Q0AG72|UVRC_NITEC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|114308417|gb|ABI59660.1| Excinuclease ABC subunit C [Nitrosomonas eutropha C91]
          Length = 604

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 232/611 (37%), Positives = 346/611 (56%), Gaps = 27/611 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+ML+ AG V+YVGKA +L+KR+ SY   +N + RI  M+SQI  I  TVT 
Sbjct: 14  TLPSQPGVYRMLNAAGDVIYVGKAIDLRKRVSSYFQKSNLSPRIQLMVSQITGIETTVTR 73

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+L+T+ H  P L  +R +   +  YFGP
Sbjct: 74  SEAEALLLENNLIKSLAPRYNILFRDDKSYPYLLLTN-HAFPRLAFYRGALDNRHQYFGP 132

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +   V+ +I  LQ+ F LR+C +SVF +RTRPCLL QIKRCS PC   I+ E Y E V
Sbjct: 133 FPNAGVVKSSIQLLQKVFRLRTCENSVFNNRTRPCLLHQIKRCSAPCVNLITPEAYREDV 192

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR--- 241
           + A  FL G    + + I + M +A+ ++ YE A++ RD++ AL  IQ       +R   
Sbjct: 193 NSAALFLQGKQDEVLKTIEQKMFEASDRQAYEQAVLFRDQMQALRMIQEKQFVDSSRALD 252

Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
             +   +   +K+   +       G++ G  TFF +   E + + +L  F+ Q Y ++  
Sbjct: 253 ADVIACTTGTDKHTVAVNLVMIRSGRHLGDKTFFPQNTHEDSISTVLEAFVSQHYLNRSV 312

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  I+L ++    +LL+    +Q G+KV +T+   GE+RK ++ A  NA  +  QK   +
Sbjct: 313 PPLIILGKKI-RVTLLQKLLSEQAGHKVTLTINPIGERRKWLDMATENAQLALRQKQIQQ 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            S +  L+   +   LP +  RIE +D SH MG + +   VV         +YR++N+  
Sbjct: 372 ASQEDRLQALQEVLNLPGLA-RIECFDISHTMGEATMASCVVYDHYAMRNGEYRRYNI-- 428

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR VL+RR++++   E  L              PD++++DGGKGQ+  A
Sbjct: 429 TGITPGDDYAAMRDVLQRRYAKIAMEEGKL--------------PDLILIDGGKGQIGVA 474

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAH 538
             V+ +L + N I ++ +AKG  R  G+E+     + E L L    P L+ IQ++RDEAH
Sbjct: 475 SEVMIELGL-NDIPLVGVAKGEARKPGLEQLILPWQEETLHLPNDHPALHLIQQIRDEAH 533

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HR +R K    S L++I GIG  R++ LL  FG +K +  +S E L   EG+S+
Sbjct: 534 RFAIQGHRAKRAKTRKTSSLEQIAGIGSKRRQNLLTRFGGLKGVKNASIEELQQTEGVSR 593

Query: 598 KIACKIYNHFH 608
            +A KIY    
Sbjct: 594 ALAEKIYRELR 604


>gi|325128377|gb|EGC51260.1| excinuclease ABC, C subunit [Neisseria meningitidis N1568]
          Length = 628

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 224/617 (36%), Positives = 338/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  + C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+ I++S      +L E    + +G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD-IIISNFPMPDALKEALESE-HGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|156933492|ref|YP_001437408.1| excinuclease ABC subunit C [Cronobacter sakazakii ATCC BAA-894]
 gi|189038051|sp|A7MJG4|UVRC_ENTS8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|156531746|gb|ABU76572.1| hypothetical protein ESA_01310 [Cronobacter sakazakii ATCC BAA-894]
          Length = 610

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 216/618 (34%), Positives = 337/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D +G V+YVGKA +L+KR+ SY  SN  + +   +++QI+NI  TV
Sbjct: 11  LKTVTSQPGVYRMYDASGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIHNIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-GDTHPRLAIHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEDYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V   + FL+G +  +  ++   M QA+    +E A   RD++ A+  +        N 
Sbjct: 190 QQVEYVRLFLAGKDDQVINQLVSRMEQASQNLAFEEAARLRDQIQAVRRVTEKQFVSNNG 249

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
              D   +     +AC+   F   G+  G+ +++ K  + +  A+++  F+ QFY     
Sbjct: 250 DDLDVIGVAFESGMACLHVLFIRQGKVLGSRSYYPKVPNGTELAEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL        LL  +  +  G +V +    +G++ + ++ A  NA  + T +
Sbjct: 310 MRTLPGEILLDFPLTTPELLAETLTEIAGRRVNVQTRPRGDRARYLKLARTNAATALTTR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L    +   LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTISQRLTALAQALHLPEIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PD++++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------VPDIILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V  +L+V   ++   ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LGQAKSVFAELDVPWDKHHPLLLGVAKGSDRKAGLETLFLEPEGEGFALPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HRK+R K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHNHAITGHRKKRAKVKNTSTLETIEGIGPKRRQMLLKYMGGLQPLLNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KIY    
Sbjct: 592 KVPGISQALAEKIYYSLK 609


>gi|51891309|ref|YP_074000.1| excinuclease ABC subunit C [Symbiobacterium thermophilum IAM 14863]
 gi|81389794|sp|Q67T37|UVRC_SYMTH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|51854998|dbj|BAD39156.1| excinuclease ABC subunit C [Symbiobacterium thermophilum IAM 14863]
          Length = 629

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 205/628 (32%), Positives = 323/628 (51%), Gaps = 39/628 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64
           +P+ PG Y   D +GR++YVGKA NL+ R++ Y  S+ N T ++  M+ QI  I   VT 
Sbjct: 10  LPDRPGCYLFKDASGRIIYVGKARNLKNRVRQYFQSSRNLTAKVLAMVGQIVEIEHIVTD 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LE+N+IK+ KP++NI LRDDK +PY+ +T   + P L   R        YFGP
Sbjct: 70  TETEALVLESNLIKKHKPKYNIRLRDDKHYPYLRLTLTEQWPRLVVARSMKKDGSRYFGP 129

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + S  A+ +T+   +R F LR+C D       R CL + I RC GPC        +Y E 
Sbjct: 130 YTSSQAMWETMKLARRLFPLRTCNDP--SRYPRGCLQYHIGRCLGPCLPDFDRHREYAEA 187

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242
           V + + FL G    + E++   M QA  + ++E A   RD++ A+  +      I + M 
Sbjct: 188 VRDLQAFLEGRTQEVLERLRARMEQAAERLEFERAAELRDQIRAIEKVTEKQKIIAHTMV 247

Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299
             D  +     + A +Q  F   G+  G   F +    E T  +IL+ F++Q Y+     
Sbjct: 248 DLDVIAYARLYDEAGVQVFFVRQGKLVGRDQFLMSGADEMTGGEILAAFIQQHYSQTDFV 307

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ IL+SE+  +  ++      + G +V +  PK+GEKR ++E    NA  + T++    
Sbjct: 308 PKEILVSEDLPDADVIAEWLSAKRGSRVALRCPKRGEKRALVEMVAQNAQEAMTERRQQR 367

Query: 360 I----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                + + +L++      LP +P RIE +D SH+ G   V  MVV       K+ YR+F
Sbjct: 368 ELELAATEGVLRELQAYLDLPRLPHRIECFDVSHVQGAEVVASMVVFEGGRPKKSDYRRF 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIK-------------NEENLNFHPKKQEYSFPS 462
            +    V   +D A M   + RRF + +               E  +     +    F  
Sbjct: 428 KMK---VDQNNDFANMAEAVGRRFRRGLAERAAQVEGRVRDLEEGRVAEGGAEYGGKFAD 484

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA--LVL 520
           +PD++I+DGGKGQLS A+ V+++L V+  I    +AK  +           +     + L
Sbjct: 485 FPDLLIIDGGKGQLSYARAVMRELGVD-HIPTFGLAKENE-------LLCTEDRPDWIEL 536

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579
                 L+ +QR+RDEAHRFAIT HRK  ++ + +S LD++ GIGP RK+ LLQ FG++K
Sbjct: 537 PRGSQALFLLQRIRDEAHRFAITYHRKLHRRASTHSRLDDVPGIGPKRKKALLQHFGSLK 596

Query: 580 MISRSSPETLASIEGISKKIACKIYNHF 607
            I  +S E +A + GI+ ++A ++    
Sbjct: 597 AIREASVEEVAQVPGITLELAERVKEAL 624


>gi|121635037|ref|YP_975282.1| excinuclease ABC subunit C [Neisseria meningitidis FAM18]
 gi|120866743|emb|CAM10496.1| excinuclease ABC subunit C [Neisseria meningitidis FAM18]
 gi|325132474|gb|EGC55167.1| excinuclease ABC, C subunit [Neisseria meningitidis M6190]
 gi|325138248|gb|EGC60817.1| excinuclease ABC, C subunit [Neisseria meningitidis ES14902]
          Length = 628

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 220/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSESEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  + C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPDPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPD V++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|261377538|ref|ZP_05982111.1| excinuclease ABC subunit C [Neisseria cinerea ATCC 14685]
 gi|269146276|gb|EEZ72694.1| excinuclease ABC subunit C [Neisseria cinerea ATCC 14685]
          Length = 628

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 220/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  D +G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPNLPGVYRFFDESGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C D+VF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDNVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSSQQHRIDELAKILNMNSDDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILSFTGETFRLPPHSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 612 VEGISKALAETIYEHLH 628


>gi|72162420|ref|YP_290077.1| excinuclease ABC subunit C [Thermobifida fusca YX]
 gi|90111761|sp|Q47NB5|UVRC_THEFY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|71916152|gb|AAZ56054.1| Excinuclease ABC subunit C [Thermobifida fusca YX]
          Length = 656

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 196/645 (30%), Positives = 320/645 (49%), Gaps = 37/645 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P  PGVY+  D  GRV+YVGKA NL+ R+ SY    +    R   MIS   ++ +
Sbjct: 10  KPGSIPTDPGVYRFRDEHGRVIYVGKAKNLRARLSSYFQDFSALHPRTQTMISTAADVDW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      
Sbjct: 70  TVVNTEVEALQLEYSWIKEYSPRFNVRYRDDKSYPYLAVTLNEEFPRVQVMRGARRRGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP++   A+  T++ L R F +R+C+  VF+      RPCLL  I +CS PC G I  
Sbjct: 130 YFGPYSYAWAIRDTVDLLLRVFPVRTCSAGVFKRARSSGRPCLLGYIDKCSAPCVGRIGV 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E+Y     +   F++G       ++   M QA   ++YE A   RD + AL  +      
Sbjct: 190 EEYRALAEDFCAFMAGETGRFLRQLEAEMKQAAAAQEYERAARIRDDIQALRTVMEKQAV 249

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q  +   G+ RG   + +    + +  +++  FL Q Y
Sbjct: 250 VLGDSTDCDVIAIAEDQLEAAVQVFYVRGGRIRGERGWVVDKVEDVSTGKLVEQFLAQTY 309

Query: 295 TDKP-------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
                       P  +L+S E  +   +     K+ G  V + VP++G+KR ++E  L N
Sbjct: 310 GGADDEESTTAIPREVLVSAEPADRDAVVAWLSKRRGAAVDVRVPQRGDKRALMETVLKN 369

Query: 348 AHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
           A ++  +  S   S        L +  +   L   P RIE +D S + G   V  MVV  
Sbjct: 370 AEQTLARHKSQRASDLTTRSKALAEIAEALGLAEAPLRIECFDISTLQGEHTVASMVVFE 429

Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-----------EENLNFH 452
           +    K++YR+F++   +     D A M  V+ RRF++ ++            E      
Sbjct: 430 DGLARKSEYRRFSIRGAEG-ADSDVAAMYEVISRRFTRYLEESQRVGELDTLGESGAPQG 488

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
            +++   F   P++V++DGG+ Q++AAQ  L  L +E+ + +  +AK  +     E +  
Sbjct: 489 AERKAPRFAYPPNLVVVDGGRPQVAAAQRALDDLGIED-VAVCGLAKRLE-----EVWLP 542

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLL 571
            + + ++L      LY +QR+RDEAHRFAI+ HR++R KA   S LD+I G+GP+R+  L
Sbjct: 543 GEEDPIILPRTSEGLYLLQRVRDEAHRFAISYHRRKRAKALTASVLDDIPGLGPVRRAAL 602

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           L+ FG+V+ +++++   +A + GI ++ A  IY           T
Sbjct: 603 LKHFGSVRRLAQATAAEIAEVPGIGERTAQTIYERLTSVEGGQRT 647


>gi|329890764|ref|ZP_08269107.1| excinuclease ABC, C subunit [Brevundimonas diminuta ATCC 11568]
 gi|328846065|gb|EGF95629.1| excinuclease ABC, C subunit [Brevundimonas diminuta ATCC 11568]
          Length = 632

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 271/613 (44%), Positives = 382/613 (62%), Gaps = 14/613 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            + + P+ PGVY+M    G  LYVGKA +L+KR+  Y     HT RI  M+S   ++   
Sbjct: 30  EARRAPDKPGVYRMYGEDGACLYVGKAKSLKKRVVQYAQGRFHTQRIGLMVSLTRSMELV 89

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +E EALLLE+N IK+LKPRFN+LLRDDKSF  ++I   H+ P + KHR + TI G Y
Sbjct: 90  VTASETEALLLESNFIKKLKPRFNVLLRDDKSFAELMIRRDHRAPQVRKHRGAHTIPGDY 149

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFAS  AV  T+N+LQ+ F LRSC+DSV+  RTRPC+L QIKRCS PCTG IS E+Y 
Sbjct: 150 FGPFASTWAVNHTLNTLQKAFLLRSCSDSVYETRTRPCMLHQIKRCSAPCTGLISLEEYG 209

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + V EA++FL G +  +  ++++ M  A+   D+E+A   RDR+ ALS I   N      
Sbjct: 210 DLVTEAEQFLRGKSRAVIGRLSQEMQAASDDLDFETAARVRDRIRALSAIAMENSVNAEG 269

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+L+     AC+Q  F+  GQN G   +F + D   ++ +IL+ FL QFY DKP
Sbjct: 270 VAEADVFALHAEGGQACVQVFFYRAGQNWGGRAYFPRVDKSDSDPEILAAFLGQFYEDKP 329

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  IL +    E  LLE +F  +  ++V+I  P++G K  +++ ALINA  +  +KL+ 
Sbjct: 330 VPRLILSNIRPHELELLEEAFSMKAEHRVEIARPQRGGKASLVDHALINAREALGRKLAE 389

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +   IL +  + F L   P+RIE+YDN+HI G +AVG M+V G  GF KNQYRKFN+ 
Sbjct: 390 NSAQSKILDEVCEAFGLDARPERIEVYDNAHIQGTNAVGGMIVAGPEGFRKNQYRKFNIR 449

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             D+   DD  MMR V+ RRF +++K+EE      +         PD++++DGG GQL+ 
Sbjct: 450 GEDLTPGDDYGMMREVMRRRFGKMVKDEEAGEAVER---------PDLLLVDGGAGQLAE 500

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
              V+  L V++ I ++ +AKGP R AG E FF+      +L ++ P LY+IQRLRDEAH
Sbjct: 501 VLAVMADLGVDD-IAVVGVAKGPDRDAGKEHFFMPGKPPFMLPLKSPALYYIQRLRDEAH 559

Query: 539 RFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFA   H KRR      +PLDEI G+GP RK+ LL +FG+ K +SR+S   L  ++G+++
Sbjct: 560 RFANGAHAKRRSMDIKKNPLDEIEGVGPGRKKALLHAFGSAKGVSRASVADLVKVDGVNQ 619

Query: 598 KIACKIYNHFHKN 610
            +A +I+  FHK+
Sbjct: 620 SLAERIHGFFHKS 632


>gi|254669948|emb|CBA04566.1| putative excinuclease ABC subunit C [Neisseria meningitidis
           alpha153]
          Length = 628

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 223/617 (36%), Positives = 339/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  + +L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDDLVCVHWVSIRGGRHVGDKSFFPDTKNDPDPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++++ E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMLEAEANGES---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|87199082|ref|YP_496339.1| excinuclease ABC subunit C [Novosphingobium aromaticivorans DSM
           12444]
 gi|119367680|sp|Q2G9G8|UVRC_NOVAD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|87134763|gb|ABD25505.1| Excinuclease ABC subunit C [Novosphingobium aromaticivorans DSM
           12444]
          Length = 658

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/607 (41%), Positives = 357/607 (58%), Gaps = 17/607 (2%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+MLD  G VLYVGKA  L+ R+ +Y       +R+  M+SQ  ++    T +E E
Sbjct: 63  KPGVYRMLDARGDVLYVGKARALKNRVANYTQVERLPNRLRRMVSQTRSMTIVTTNSEAE 122

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLEA +IKR +P +N+LLRDDKSFP+IL+   H  P + KHR +   +G+Y+GPFAS 
Sbjct: 123 ALLLEAQLIKRFRPPYNVLLRDDKSFPFILLRGDHAFPRISKHRGARKAKGNYYGPFASA 182

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +V  TIN+LQ+ F LRSC D     R RPCLL+QI+RCS PC G IS   Y E V +AK
Sbjct: 183 GSVNTTINALQKLFLLRSCNDGFMARRDRPCLLYQIRRCSAPCVGRISEADYGELVRQAK 242

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245
            FL G +  ++ +I   M++A    D+E A + RDRL A + IQ             D F
Sbjct: 243 DFLGGKSGAVQREIEAQMHKAAEDLDFERAAMLRDRLRAATFIQGSQAINAEGVGNADVF 302

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           ++        +Q  F   GQN G   FF       +  ++++ FL QFY + P    IL+
Sbjct: 303 AMATKGGQVAVQAFFIRGGQNWGHRAFFPSHTEGLSEEEVMTSFLAQFYEEVPPARLILV 362

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
                E  LL  +  +  G KV+I+VP++G++R+++EQA  NA  +  ++++   +   +
Sbjct: 363 DRALPEADLLAEALCEAAGGKVEISVPQRGDRRRLMEQAQRNAVEALDRRMAESGTKAKV 422

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           +++  +   LP +P+RIEIYDNSHI G +A+G MVV G  GFVK QYRK+N+     +T 
Sbjct: 423 MRELAEFLELPEVPQRIEIYDNSHIQGTNALGAMVVAGPEGFVKGQYRKWNIK--LAQTN 480

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD AMMR V+ RRF +  + +          +    +WPD+V++DGGKGQ+SA +  L +
Sbjct: 481 DDFAMMREVMTRRFGRAQEED---------PDRESGNWPDLVLIDGGKGQMSAVKEALGE 531

Query: 486 LNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           L +E+ + +++IAKGP     G E F    G   +L +  P+L+ +Q +RDE HRFAI  
Sbjct: 532 LGIED-VPLVAIAKGPHHGREGREVFHFPDGREKMLPVNSPVLFQLQVMRDEVHRFAIGA 590

Query: 545 HRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR +R +A   SPLDEI GIGP RKR LL  FGT   +  +S E L    G+S  +A  I
Sbjct: 591 HRAKRSRAITASPLDEIPGIGPARKRALLLHFGTAGKVRAASLEDLQRAPGVSAAVAQTI 650

Query: 604 YNHFHKN 610
           Y+ +H +
Sbjct: 651 YDFYHPS 657


>gi|83589125|ref|YP_429134.1| excinuclease ABC subunit C [Moorella thermoacetica ATCC 39073]
 gi|119367672|sp|Q2RLU8|UVRC_MOOTA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|83572039|gb|ABC18591.1| Excinuclease ABC subunit C [Moorella thermoacetica ATCC 39073]
          Length = 613

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 197/622 (31%), Positives = 319/622 (51%), Gaps = 30/622 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P+ PGVY M D  G ++YVGKA +L+ R++SY    +   R   M+S + +  + +T 
Sbjct: 9   RLPDHPGVYIMHDANGAIIYVGKAASLRNRVRSYFRGQHQ-PRTQAMVSHVADFEYILTD 67

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            EVEAL+LE N+IK+ +PR+N+ L+DDKS+PYI IT +   P +   R  +     YFGP
Sbjct: 68  NEVEALILECNLIKQHRPRYNVSLKDDKSYPYIKITTQEDFPRIQITRSVTRDGSRYFGP 127

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  ++++T+  L+  F +R+C D+  + R+RPCL   I RC  PC G++  E Y E V
Sbjct: 128 YTSAGSLKETLKLLRGLFPIRTCRDTPLQPRSRPCLNAHIGRCLAPCAGQVDRETYREAV 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYNR 241
                FL G +  L +++   M  A  + ++E A   RD+L A+  +        +    
Sbjct: 188 DNVIMFLEGRHTALVKELKEQMEAAAARLEFEKAARLRDQLRAVQEVCEKQKLAAASGED 247

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300
            D  +       A     F   G+  G   FFL      +  ++++  L+++Y+     P
Sbjct: 248 ADAIAFAREGEAALGLIFFSRGGKVIGRDHFFLTGSEGLSRGEVMAALLKEYYSRGVEIP 307

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKL 356
             ILL +E E+ + +     +  G +V + VPK+G K K++     NA          + 
Sbjct: 308 PEILLHDEPEDAATIASWLSRLRGGRVNLRVPKRGTKLKLLRLVHENAVSLLQEHLLTRR 367

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             E   +  L +  +   LP +P+R+E YD S+  G S VG M V  +   + + YR+F 
Sbjct: 368 RQEEGSRAALLELQEILELPRLPRRMEAYDISNFQGSSQVGAMAVFVDGRPLPSAYRRFQ 427

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    V+  +D A ++ VL RRF +  + +             F   PD V++DGG GQL
Sbjct: 428 IKT--VRGPNDFASLQEVLSRRFRRAAEQD-----------PHFADLPDFVLIDGGLGQL 474

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
            AA+  ++ + V   I    +AK  +       F V   E + L      L  +Q LRDE
Sbjct: 475 HAARETMEAMGV-GYIPTFGLAKEEEL-----LFRVGTSEPIRLPRESKALQILQHLRDE 528

Query: 537 AHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            HRFAIT HR++R+K A  S LD+I G+GP RK+ LL+ FG+V  IS+++ E L ++EG+
Sbjct: 529 VHRFAITYHRQKREKTAYRSVLDDIPGVGPKRKKALLRHFGSVAAISKATLEDLLAVEGM 588

Query: 596 SKKIACKIYNHF-HKNTSHTPT 616
           ++ +A +I      ++     T
Sbjct: 589 NRTVAARILAGLGRRSDGEDST 610


>gi|74316719|ref|YP_314459.1| excinuclease ABC subunit C [Thiobacillus denitrificans ATCC 25259]
 gi|119367858|sp|Q3SKW8|UVRC_THIDA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|74056214|gb|AAZ96654.1| Excinuclease ABC, C subunit [Thiobacillus denitrificans ATCC 25259]
          Length = 598

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 225/609 (36%), Positives = 329/609 (54%), Gaps = 25/609 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M+D AG VLYVGKA +L+KR+ SY    + + RI  M+  +++I  TVT 
Sbjct: 10  SLPTLPGVYRMVDAAGAVLYVGKAKDLRKRVGSYFLKTDQSPRIRLMLKSVDHIDTTVTR 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK LKPRFNIL RDDKS+PY+L+T  H  P L   R +   +   FGP
Sbjct: 70  TEAEALLLENNLIKGLKPRFNILFRDDKSYPYLLLT-GHGYPRLAYFRGAPKKRDQAFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  AV ++I  LQ+ F LR+C D+VF +R+RPCLL QIKRCS PC   +S+E Y   V
Sbjct: 129 YPNSYAVRESIQLLQKVFQLRTCEDTVFGNRSRPCLLHQIKRCSAPCVSLVSAETYARDV 188

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---- 240
            EA   L G    L E+I   MN A    D+E+A   RDRL  L+ ++            
Sbjct: 189 AEAMLLLKGEATALTEEITAQMNAAAENLDFETAAYLRDRLRMLATVREKQFVDTTGSEA 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D  ++     +  +       G++ G  +FF +    +   + L  F+ Q Y D P P
Sbjct: 249 DADVVAVAEVGGVIAVNLTMIRGGRHLGDRSFFPQHGEGAALGEALEAFVAQHYLDHPIP 308

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             IL+SE  +  +L  +   +Q G KV +     GE+R  I  A  NA  S  ++ +   
Sbjct: 309 ARILVSEAIDSAALQTL-LSEQAGKKVTLQHRVTGERRVWIAMAQANARLSAERRSADRA 367

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +    L        LP +  RIE +D SH MG + +   VV   +   K+ YR++N+   
Sbjct: 368 NQSQRLAALRDTLELPTLN-RIECFDISHTMGEATIASCVVYEGDDLKKSDYRRYNIEG- 425

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A M   L +RF + ++                   PD++++DGGKGQ++ A 
Sbjct: 426 -ITPGDDYAAMHAALIKRFHRTVEEN--------------GVLPDLLLIDGGKGQVAMAV 470

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
             L +L +++ + ++ +AKG  R  G+E      G  L L    P  + IQ++RDEAHRF
Sbjct: 471 EALAELGIDD-VLLLGVAKGESRKPGLETLIFADGRELKLARDHPGFHLIQQVRDEAHRF 529

Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR +R KA   S L++I GIGP R++ LL+ FG ++ +  +  + LAS+ GIS+++
Sbjct: 530 AITGHRAKRGKARVQSTLEDIAGIGPKRRKQLLEHFGGLQGVRNAGVDALASVNGISREL 589

Query: 600 ACKIYNHFH 608
           A  IYN  H
Sbjct: 590 AEIIYNALH 598


>gi|239999187|ref|ZP_04719111.1| excinuclease ABC subunit C [Neisseria gonorrhoeae 35/02]
 gi|268595016|ref|ZP_06129183.1| excinuclease ABC subunit C [Neisseria gonorrhoeae 35/02]
 gi|268548405|gb|EEZ43823.1| excinuclease ABC subunit C [Neisseria gonorrhoeae 35/02]
          Length = 628

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 221/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL  DDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFCDDKSYPYLMLS-GHQYPQMAYYRGTLKNPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYCD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIIQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  + TQ
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAITQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHI-PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RHLQQSNQQHRIDELAKILGMNSDGINRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPDVV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKIQEAEANGES---------VKWPDVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGIAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGELFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|258545961|ref|ZP_05706195.1| excinuclease ABC subunit C [Cardiobacterium hominis ATCC 15826]
 gi|258518839|gb|EEV87698.1| excinuclease ABC subunit C [Cardiobacterium hominis ATCC 15826]
          Length = 607

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/606 (35%), Positives = 326/606 (53%), Gaps = 23/606 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVYQM D  G+VLYVGKA NL+ R+ SY   +  + +   ++ Q+ +I  T+T TE 
Sbjct: 20  TLPGVYQMRDAEGKVLYVGKAKNLRNRLSSYFRDSGMSAKTRALMRQVVDIDTTITHTET 79

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL+LE N+IK   P+FNILLRDDKS+PYI+++  H  P L  HR +   QG +FGPF +
Sbjct: 80  EALILENNLIKAHLPKFNILLRDDKSYPYIVLS-AHAFPRLSLHRGARK-QGEFFGPFPN 137

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
           V A   ++  L + F +R C DS F  R+RPCL +QI+RC  PC G I  + Y E V   
Sbjct: 138 VQAARYSLEVLAKVFRVRQCEDSFFAARSRPCLQYQIERCYAPCVGFIDEKAYAETVAHT 197

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF-- 245
           + FL+G +  L +++   M  A     YE A + RD+L  L  I      +    D    
Sbjct: 198 RDFLNGRSEVLLQELTAKMEVAAEARAYEQAALLRDQLVQLRKITEKQHMVAGEADADVL 257

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           ++      AC+Q  F+  G +  +  FF +   E+  A++L+ F+ QFY ++  P  +++
Sbjct: 258 AVATAYGEACVQVLFYRDGHSVSSQAFFPRLPEETPEAEVLAAFITQFYHERNVPPQLVI 317

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           S   E    +     ++ G KV +    +  +RK +E A  NA  S   +LS +++ Q  
Sbjct: 318 SHALEGGETIAAWLGEKSGRKVSLNAKPREARRKWLELAEENARLSLGLRLSGKLTMQQR 377

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
                + FA P +P+R+E  D SH  G + V   VV    G +K+ YR++N+    V   
Sbjct: 378 FAALAEAFAWPDVPERLECIDISHTQGEATVASCVVFDRRGALKSDYRRYNIRE--VTAG 435

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A +R  + RRF ++ K E                 PDV+ +DGGKGQL  A  V  +
Sbjct: 436 DDYAAIRQTVSRRFERIQKGE--------------GVLPDVLFIDGGKGQLRQAVEVFNE 481

Query: 486 LNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           L++   + ++ +AKG  R AG+E+F F  +     L      +  I ++RDEAHRFAIT 
Sbjct: 482 LSISG-VHLVGVAKGQGRKAGLEQFWFPHEDAPRYLPSDSQAMQLIVQIRDEAHRFAITG 540

Query: 545 HRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR  R K +  S L++I G+G  R++ LL+ FG +  I R+  E LA + G+S+ +A +I
Sbjct: 541 HRAGRAKNSKRSLLEQIPGVGAKRRQALLKYFGGLAQIRRAGVEDLAKVPGVSETLAKEI 600

Query: 604 YNHFHK 609
           Y   H+
Sbjct: 601 YAVLHE 606


>gi|261392394|emb|CAX49936.1| UvrABC system protein C (UvrC protein; excinuclease ABC subunit C)
           [Neisseria meningitidis 8013]
          Length = 617

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 220/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+ +I  T+
Sbjct: 17  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTI 76

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 77  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 135

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 136 GPYPNSNAVRDSIQILQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 195

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 196 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 255

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  + C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 256 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 315

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 316 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 373

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 374 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 433

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPD V++DGGK
Sbjct: 434 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 482

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 483 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQT 540

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 541 VRDESHRFAITGHRKKRDKARVTSSLGDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 600

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 601 VEGISKALAETIYNHLH 617


>gi|318075147|ref|ZP_07982479.1| excinuclease ABC subunit C [Streptomyces sp. SA3_actF]
          Length = 790

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 192/641 (29%), Positives = 315/641 (49%), Gaps = 38/641 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           Q+P+ PGVY+  D   RV+YVGKA +L++R+ +Y     +   R   M++   ++ +TV 
Sbjct: 13  QIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAHLHPRTRTMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P     R +      YFG
Sbjct: 73  STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRAQVMRGAKRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+  T++ L R F +R+C+  VF++     RPCLL  I +CS PC G IS E +
Sbjct: 133 PYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIDKCSAPCVGRISPEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +   +   F++G   +   ++   M +A     YE A   RD + AL+     +  +  
Sbjct: 193 RDLAEDFCHFMAGHTGHYLRRLEERMTEAAEDMAYERAARLRDDIGALTRAMEKSAVVLA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +L  ++  A +Q      G+ RG   +        T A ++ + L+Q Y ++
Sbjct: 253 DATDADLIALAQDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVTTADLVEHALQQLYGEE 312

Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ +L+    E    ++    ++ G +V + VP++G+KR ++E    NA +S   
Sbjct: 313 RGDAVPKEVLVPALPEPVQPVQEWLSERRGAQVSLRVPQRGDKRALMETVERNAQQSLAL 372

Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             +   S        L++      L  +P RIE YD SH+ G   V  MVV  +    K+
Sbjct: 373 HKTKRASDLTTRSRALEEIAAALDLDGVPLRIECYDISHLQGDDVVASMVVFEDGLARKS 432

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE---------------ENLNFHPKK 455
           +YR+F +     + QDD   M  V+ RRF + +                  E        
Sbjct: 433 EYRRFQIKG--FQGQDDVRSMHEVITRRFRRYLAERERTGEWTEEELDGPVEPGGLDEDG 490

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
           +   F   P ++++DGG+ Q++AA+  L +L +++ + +  +AK  +     E +   + 
Sbjct: 491 RPKRFAYPPQLLVVDGGQPQVAAARRALDELGIDD-VAVCGLAKRLE-----EVWVPGEE 544

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQS 574
           + +VL      LY +QR+RDEAHRFAIT  R +R K     PLDE+ G+G  RK+ LL+ 
Sbjct: 545 DPVVLPRSSEGLYLLQRVRDEAHRFAITYQRSKRAKRFRAGPLDEVPGLGQARKQALLKH 604

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           FG+VK +  ++ E +  + GI +K A  I   F ++    P
Sbjct: 605 FGSVKKLRAATIEQICEVPGIGRKTAETILATFARSEPGAP 645


>gi|217977613|ref|YP_002361760.1| excinuclease ABC, C subunit [Methylocella silvestris BL2]
 gi|217502989|gb|ACK50398.1| excinuclease ABC, C subunit [Methylocella silvestris BL2]
          Length = 679

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 284/611 (46%), Positives = 383/611 (62%), Gaps = 7/611 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q P+ PGVY+M+   G VLYVGKA +++KRI SYM    H +RI  MI+   ++ F  T 
Sbjct: 67  QAPQGPGVYRMIAADGEVLYVGKAKSVRKRIASYMRPLGHNNRIARMIALTASMVFISTS 126

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N IK++KPRFN+L+RDDKSFPYIL+T  H  P + KHR +   +G YFGP
Sbjct: 127 TETEALLLETNYIKQMKPRFNVLMRDDKSFPYILLTGDHAAPQILKHRGARNRKGDYFGP 186

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FASV AV +T+N+L+R F LRSC+DS + +RTRPCLL QIKRCS PCTGEI  + Y   V
Sbjct: 187 FASVWAVNRTMNALERAFLLRSCSDSYYENRTRPCLLHQIKRCSAPCTGEIDLDDYRRLV 246

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            EA+ FLSG +  +++ +A  M  A+   ++E A   RDR+AALS IQ            
Sbjct: 247 GEARDFLSGKSRAVRDLLATEMTSASDALEFERAARLRDRIAALSAIQGAQGVNPKTVEE 306

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F++       C++  FF   QN G   +F + D    +A++L  FL QFY DKP P 
Sbjct: 307 ADVFAIVEEAGQFCVEAFFFRTYQNWGNRAYFPRADKSLASAEVLDAFLAQFYADKPAPR 366

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILLS E E  ++L  +   + G++++I  P++GEK +++E A  NA  + +++LS   S
Sbjct: 367 LILLSHEIENGAVLSEALSLRTGHRIEIARPQRGEKHELVEHACQNAREAMSRRLSETAS 426

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            + +L        L    +R+EIYDNSHIMG +AVG MVV G  GF+K  YR FN+   D
Sbjct: 427 QEKLLAALAAALGLSAPLRRVEIYDNSHIMGTNAVGAMVVAGPAGFMKAHYRTFNIKGED 486

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS--FPSWPDVVILDGGKGQLSAA 479
           +   DD  MMR VL RRF +L K+E   +    + +    FP  PD++++DGG+GQ  AA
Sbjct: 487 LTPGDDYGMMREVLRRRFLRLAKDEAAADGPSTRDDDEDIFPQRPDLILIDGGQGQFDAA 546

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             +L +L+V   + +  IAKG  R+AG E FFV       L+ RDP LYF+QRLRDEAHR
Sbjct: 547 NAILDELSVTG-VAVAGIAKGVDRNAGRESFFVAGKAPFRLSPRDPALYFVQRLRDEAHR 605

Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI THR RRKK    SPLDEI G+GP RKR LL +FGT K IS+++   L  + G++  
Sbjct: 606 FAIGTHRARRKKEFTRSPLDEIAGVGPARKRALLHAFGTAKAISKAALSDLEKVAGVNAA 665

Query: 599 IACKIYNHFHK 609
            A  +YN+FH+
Sbjct: 666 TARLVYNYFHE 676


>gi|16127113|ref|NP_421677.1| excinuclease ABC subunit C [Caulobacter crescentus CB15]
 gi|221235911|ref|YP_002518348.1| excinuclease ABC subunit C [Caulobacter crescentus NA1000]
 gi|81534644|sp|Q9A4F3|UVRC_CAUCR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|13424497|gb|AAK24845.1| excinuclease ABC, subunit C [Caulobacter crescentus CB15]
 gi|220965084|gb|ACL96440.1| excinuclease ABC subunit C [Caulobacter crescentus NA1000]
          Length = 640

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 266/618 (43%), Positives = 381/618 (61%), Gaps = 23/618 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P+ PGVY+M+  A  VLYVGKA +L+KR+  Y     HT+RI +M+     + F  T 
Sbjct: 32  RLPDAPGVYRMIGEADEVLYVGKAKSLKKRVVQYAQGRFHTNRIANMVDATRAMEFITTR 91

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+LKPRFN+LLRDDKSFP I+I   H  P L KHR + TI+G YFGP
Sbjct: 92  TEADALLLEINLIKQLKPRFNVLLRDDKSFPEIVIRRDHDAPQLRKHRGAHTIKGDYFGP 151

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV +T+N+LQ+ F LRSC+DSV+  R RPC+L+QIKRC+ PCTG I  + Y   V
Sbjct: 152 FASAWAVNRTLNTLQKAFLLRSCSDSVYDSRDRPCMLYQIKRCAAPCTGLIGKDDYQALV 211

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            +A+ FL G +  +   +A+ M +A  + ++E A   RDR+ ALS +             
Sbjct: 212 DQAEAFLRGKSRAVMATMAKAMEEAAEELEFERAARLRDRIRALSAVAQETQINPETVEE 271

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI---------LSYFLRQ 292
            D  +L+     AC+Q  FF  GQN G   +F +    + + +          ++ FL Q
Sbjct: 272 ADVVALHVEGGQACVQVFFFRAGQNWGNRAYFPRITGAADDPEDETVTEEQRIITAFLGQ 331

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
           FY DKP P  IL + +  E+ LL  +F  + G KV+I VPK+GEK  +++  L NA  + 
Sbjct: 332 FYDDKPIPRLILANVQPAESELLSEAFALKSGRKVEIAVPKRGEKADLVQHVLTNAREAL 391

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +K++   +   +L    + F L   P+RIE+YDNSHI G +AVG M+V G  GF+K QY
Sbjct: 392 GRKMAEGSAQTKLLAGVAEAFKLDAPPERIEVYDNSHIQGANAVGGMIVAGPEGFMKGQY 451

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RKFN+   ++   DD  MM+ VL RRF++L+K EE  +   +         PD+V++DGG
Sbjct: 452 RKFNIKSTELTPGDDYGMMKEVLRRRFARLVKEEEEGDDANR---------PDLVLVDGG 502

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           +GQL AA  ++  L V++ I ++ +AKGP R AG+E+FF+      +L  + P+LY++QR
Sbjct: 503 QGQLDAAIEIMADLGVDD-IAVVGVAKGPDRDAGLERFFIPGQTPFMLEPKSPVLYYLQR 561

Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFAI  HR RR      +PLDEI G+GP RK+ LL +FG+ K + R+S E L  
Sbjct: 562 LRDEAHRFAIGAHRTRRSMDLKKNPLDEIEGVGPGRKKALLHAFGSAKGVGRASVEDLVK 621

Query: 592 IEGISKKIACKIYNHFHK 609
           ++G+S+ +A +I+  F K
Sbjct: 622 VDGVSQALAERIFGFFRK 639


>gi|318056352|ref|ZP_07975075.1| excinuclease ABC subunit C [Streptomyces sp. SA3_actG]
          Length = 930

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 192/641 (29%), Positives = 315/641 (49%), Gaps = 38/641 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           Q+P+ PGVY+  D   RV+YVGKA +L++R+ +Y     +   R   M++   ++ +TV 
Sbjct: 13  QIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAHLHPRTRTMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P     R +      YFG
Sbjct: 73  STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRAQVMRGAKRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+  T++ L R F +R+C+  VF++     RPCLL  I +CS PC G IS E +
Sbjct: 133 PYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIDKCSAPCVGRISPEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +   +   F++G   +   ++   M +A     YE A   RD + AL+     +  +  
Sbjct: 193 RDLAEDFCHFMAGHTGHYLRRLEERMTEAAEDMAYERAARLRDDIGALTRAMEKSAVVLA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +L  ++  A +Q      G+ RG   +        T A ++ + L+Q Y ++
Sbjct: 253 DATDADLIALAQDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVTTADLVEHALQQLYGEE 312

Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ +L+    E    ++    ++ G +V + VP++G+KR ++E    NA +S   
Sbjct: 313 RGDAVPKEVLVPALPEPVQPVQEWLSERRGAQVSLRVPQRGDKRALMETVERNAQQSLAL 372

Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             +   S        L++      L  +P RIE YD SH+ G   V  MVV  +    K+
Sbjct: 373 HKTKRASDLTTRSRALEEIAAALDLDGVPLRIECYDISHLQGDDVVASMVVFEDGLARKS 432

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE---------------ENLNFHPKK 455
           +YR+F +     + QDD   M  V+ RRF + +                  E        
Sbjct: 433 EYRRFQIKG--FQGQDDVRSMHEVITRRFRRYLAERERTGEWTEEELDGPVEPGGLDEDG 490

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
           +   F   P ++++DGG+ Q++AA+  L +L +++ + +  +AK  +     E +   + 
Sbjct: 491 RPKRFAYPPQLLVVDGGQPQVAAARRALDELGIDD-VAVCGLAKRLE-----EVWVPGEE 544

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQS 574
           + +VL      LY +QR+RDEAHRFAIT  R +R K     PLDE+ G+G  RK+ LL+ 
Sbjct: 545 DPVVLPRSSEGLYLLQRVRDEAHRFAITYQRSKRAKRFRAGPLDEVPGLGQARKQALLKH 604

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           FG+VK +  ++ E +  + GI +K A  I   F ++    P
Sbjct: 605 FGSVKKLRAATIEQICEVPGIGRKTAETILATFARSEPGAP 645


>gi|316984129|gb|EFV63107.1| excinuclease ABC, C subunit [Neisseria meningitidis H44/76]
 gi|325134434|gb|EGC57079.1| excinuclease ABC, C subunit [Neisseria meningitidis M13399]
 gi|325140450|gb|EGC62971.1| excinuclease ABC, C subunit [Neisseria meningitidis CU385]
 gi|325200049|gb|ADY95504.1| excinuclease ABC, C subunit [Neisseria meningitidis H44/76]
 gi|325205902|gb|ADZ01355.1| excinuclease ABC, C subunit [Neisseria meningitidis M04-240196]
          Length = 628

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 221/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  + +G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPNLPGVYRFFNESGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSESEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVRLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPD V++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 612 VEGISKALAETIYNHLH 628


>gi|240171790|ref|ZP_04750449.1| excinuclease ABC subunit C [Mycobacterium kansasii ATCC 12478]
          Length = 647

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 191/639 (29%), Positives = 310/639 (48%), Gaps = 35/639 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   M++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDAHGRVIYVGKAKSLRSRLTSYFADVAHLHPRTRQMVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  NTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPALAVTLNEEFPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSTGVFKRHKQIERPCLLGYIDKCSAPCVGRVSAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG       ++ R+M+ A  + D+E A   RD L+AL         +  
Sbjct: 193 RQIVEDFCDFLSGQTDRYARELERHMSAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK---TDSESTNAQILSYFLRQFY 294
                D  +   ++  A +Q      G+ RG   + ++      +S   Q++  FL QFY
Sbjct: 253 DGTDADVMAFADDELEAAVQVFHVRGGRVRGQRGWIVEKSGDPGDSGEEQLVEQFLTQFY 312

Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
            +             P P  +L+      +  L        G +V + VP++G+KR + E
Sbjct: 313 GEQAELGSAADESVNPVPREVLVPCLPSNSEELSSWLSGLRGSRVTLRVPRRGDKRALAE 372

Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398
               NA  +  Q               L++  +   L   P RIE  D SH+ G   VG 
Sbjct: 373 TVQRNAKEALQQHKLKRAGDFNARSAALQNIQEALGLADAPLRIECVDISHVQGTDVVGS 432

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQ 456
           +VV  +    K+ YR F +     + + DD A +  V  RRF + + ++ + N   P+ +
Sbjct: 433 LVVFEDGLPRKSDYRHFGIREAAGQGRSDDVASIAEVTRRRFLRHVSDQSDPNLLSPEGK 492

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
              F   P++ ++DGG  Q++AA+ VL +L V + + +I +AK  +     E +   + +
Sbjct: 493 SRRFAYPPNLYVVDGGAPQVNAAKAVLDELGVSD-VAVIGLAKRLE-----EVWVPSEPD 546

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575
            +++      LY +QR+RDEAHRFAIT HR +R K    S LD + G+G  R++ L+  F
Sbjct: 547 PVIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSKRMTASALDGVPGLGEHRRKALVTHF 606

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           G++  +  ++ + + ++ GI    A  +      + S  
Sbjct: 607 GSIARLKEATVDQITAVPGIGVATATAVLEALRPDRSEA 645


>gi|308049925|ref|YP_003913491.1| Excinuclease ABC subunit C [Ferrimonas balearica DSM 9799]
 gi|307632115|gb|ADN76417.1| Excinuclease ABC subunit C [Ferrimonas balearica DSM 9799]
          Length = 612

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 213/616 (34%), Positives = 340/616 (55%), Gaps = 30/616 (4%)

Query: 5   QMPECPGVYQMLD-IAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +   PGVY+M D   G VLYVGKA +L+KR+ SY  SN  + +   +++QI +I  TVT
Sbjct: 14  SVTSEPGVYRMYDTPGGTVLYVGKAKDLKKRLSSYFRSNLPSTKTRALVAQIGHIEVTVT 73

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EAL+LE + IK+  PR+N+LLRDDKS+PYI ++  H+ P L  HR +   +G YFG
Sbjct: 74  HTETEALILEHDYIKQYMPRYNVLLRDDKSYPYIFLS-DHQHPRLAFHRGAKRAKGHYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ +  AV ++++ +Q+ F +R C D  +++R+RPCL +Q+KRCSGPCTG IS E Y + 
Sbjct: 133 PYPNGGAVRESLHLMQKLFPIRQCEDGFYKNRSRPCLQYQLKRCSGPCTGMISDEDYAQQ 192

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242
           V  A+ FL G +  +  ++A  M QA++   +E A  +RD++ AL  +Q       ++  
Sbjct: 193 VKLARLFLQGQSQTVIGQLAEQMEQASMALAFEKAAQYRDQIQALRTVQEQQGVQGHQAE 252

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDK 297
            D   ++    +AC    F   G+  G+ ++F K   ++   +++S FL QFY     ++
Sbjct: 253 LDIIGIHLEGGMACCHLLFVRQGKILGSRSYFPKVPRDTDMDELISSFLLQFYLGGGEER 312

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I+L+   +E   LE    ++   KV I    +GE+ +    A  NA  + + +L+
Sbjct: 313 HIPKEIVLNVACDELPALEAMLSERGQGKVSIKTRVRGERAQFQRLAETNARSALSSRLA 372

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + +     +   +   L    +R+E +D SH MG   V   VV    G  K +YR++N+
Sbjct: 373 HKSTVAERFRQLAEALELEQPIRRMECFDISHTMGEKTVASCVVFNAEGPAKPEYRRYNI 432

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
             + +   DD A M   L+RR+ ++ + +                 PD++ +DGGKGQLS
Sbjct: 433 --SGITPGDDYAAMGQALKRRYEKVAEADN---------------LPDILFIDGGKGQLS 475

Query: 478 AAQGVLKKLNVENRIT---IISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533
            A+ V++    E+ +    ++ +AKG  R  G+E   +    E + L    P L+ IQ +
Sbjct: 476 MAEAVMEAALAESGLPQPLMVGVAKGESRKPGLETLILGFTREVIHLPADAPALHLIQHI 535

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAI+ HR  R KA   S L+ I GIG  R++ LL+  G ++ + R+S   LA +
Sbjct: 536 RDEAHRFAISGHRAARGKARGQSVLESIPGIGAKRRQQLLKFLGGMQELKRASVAELAKV 595

Query: 593 EGISKKIACKIYNHFH 608
            GIS ++A KIY+   
Sbjct: 596 PGISPQLAQKIYDALR 611


>gi|325144534|gb|EGC66833.1| excinuclease ABC, C subunit [Neisseria meningitidis M01-240013]
          Length = 628

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 220/617 (35%), Positives = 334/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  + +G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPNLPGVYRFFNESGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSESEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVRLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPD V++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 612 VEGISKALAETIYEHLH 628


>gi|83646747|ref|YP_435182.1| excinuclease ABC subunit C [Hahella chejuensis KCTC 2396]
 gi|119367656|sp|Q2SF17|UVRC_HAHCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|83634790|gb|ABC30757.1| excinuclease ABC, C subunit [Hahella chejuensis KCTC 2396]
          Length = 612

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 219/617 (35%), Positives = 332/617 (53%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +Q+   PGVY+M+D  G VLYVGKA NL+ R+ SY  +   + +   ++ +I +I  T+
Sbjct: 13  LKQLTTRPGVYRMMDARGEVLYVGKARNLKNRVSSYFRNTGVSIKTRALVEKIADIEITI 72

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK--HRDSSTIQGS 120
           T +E EALLLE N+IK LKP +NILLRDDKS+PYI ++   + P+L     R   T +G 
Sbjct: 73  THSETEALLLEQNLIKTLKPPYNILLRDDKSYPYIYLSSHDEYPSLTFRRVRQKKTGKGR 132

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           +FGP+ S  AV +++  LQ+ F +R C DS F +R+RPCL  QI RCS PC G I  + Y
Sbjct: 133 FFGPYTSAAAVRESLALLQKIFRIRQCEDSFFSNRSRPCLQHQIGRCSAPCVGLIDPQSY 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E +  A  FL G N  +  +  + M  A+ + D+E A + RD++  L  +Q        
Sbjct: 193 AEDMSHATMFLEGRNPEIINETIQQMEVASAQLDFERAAVLRDQVDYLRRVQEQQAIEGV 252

Query: 241 RMDCFSLYHNKNLACIQTC--FFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             D  +   + +L  +     F   G+  G+ +F+L    ES +  +LS FL Q+Y  + 
Sbjct: 253 ARDIDAFALSSSLELVVVHGLFIRAGRVVGSKSFYLSERLESDDGDLLSSFLNQYYFGEH 312

Query: 299 ----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ I  +    +   L+ +F + +   V+I    +  + + +  A  NA+++ + 
Sbjct: 313 AIYGLPQEITTTVGLTDKDALKAAFKEVFNRNVRIEHNVRSNRAEWLHLAQTNANQALST 372

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           ++ ++ +     + F     L    KR+E +D SH  G + V   VV G  G +K+ YR+
Sbjct: 373 RMQSQDAQLQRWQSFCDALNLEASVKRVECFDVSHTFGEATVASCVVFGPEGAIKDLYRR 432

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +N+    V   DD   M   L RR+S+L  ++  L              PD++++DGGKG
Sbjct: 433 YNIKD--VPAGDDYHAMEQALTRRYSKLKDSDVGL--------------PDIILIDGGKG 476

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533
           QL  A  V  +L +   +T+I +AKG  R  GME  F+      L L      L+ IQ++
Sbjct: 477 QLGIAHQVFDELQITG-VTLIGVAKGVTRKPGMETLFISADNSILNLPGDSTALHLIQQI 535

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT HR +R KK   S LD + GIGP R+R LL  FG+V+ I R+S E +  +
Sbjct: 536 RDEAHRFAITGHRNQRNKKRTQSVLDAVPGIGPKRRRDLLNYFGSVRNIERASLEEIKRV 595

Query: 593 EGISKKIACKIYNHFHK 609
            GIS+ IA  IY  FH+
Sbjct: 596 PGISEVIAQTIYAAFHE 612


>gi|332188711|ref|ZP_08390425.1| excinuclease ABC, C subunit [Sphingomonas sp. S17]
 gi|332011275|gb|EGI53366.1| excinuclease ABC, C subunit [Sphingomonas sp. S17]
          Length = 639

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 256/609 (42%), Positives = 368/609 (60%), Gaps = 15/609 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D  G VLY+GKA  L+ R+ +Y   +    R+  M+SQ  ++    T 
Sbjct: 39  TLPLRPGVYRMQDARGDVLYIGKARALKNRVANYTQVDRLPKRLQRMVSQTRSMTIVTTN 98

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EALLLEA +IKR +P FN+LLRDDKSFP+IL+ + H  P + KHR +    G+Y+GP
Sbjct: 99  NEAEALLLEAQLIKRYRPAFNVLLRDDKSFPFILLRNDHDFPRIQKHRGARRAVGNYYGP 158

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  +V  T+N+LQ+ F LRSC DS F+ R RPCLL+QIKRCS PC G I    Y E V
Sbjct: 159 FASAGSVNNTLNALQKLFLLRSCTDSFFKGRDRPCLLYQIKRCSAPCVGRIDEAAYAELV 218

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            +AK FL G +  ++ K+ + M  A    D+E A I RDRL AL+ IQ            
Sbjct: 219 ADAKNFLGGKSTQVQAKLGKQMQDAAEAMDFELAAILRDRLKALTFIQGTQAINAEGVGD 278

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F+L     +  IQ  F   GQN G  +FF    ++    ++L+ FL QFY + P  +
Sbjct: 279 ADIFALACRDGVMGIQAFFIRGGQNWGHRSFFPAHTTDVPEEEVLTSFLSQFYEEVPPAK 338

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILL  E  E +LL  +  ++ GYKV++ VP++G++R++++QA  NA  +  ++L+   +
Sbjct: 339 MILLDRELPEGALLTEALGERAGYKVQLAVPQRGDRRRLLDQAKRNAVEALDRRLAESTT 398

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L++    F L   P+RIE+YDNSHI G +A+G MVV G  GF K QYRKFN+  N+
Sbjct: 399 QAKLLREVADFFDLSEPPQRIEVYDNSHIQGTNALGAMVVAGPEGFQKGQYRKFNIKGNE 458

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
             T DD  MMR V  RRF++ ++            +    +WPD+V++DGG+GQL+AA+ 
Sbjct: 459 AATNDDFGMMREVFRRRFARQLEE---------NPDRDDATWPDLVLIDGGRGQLNAAKA 509

Query: 482 VLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
           VL+ L +E+ + ++ +AKGP     G E F +  G   +L +  P+L+++QRLRDE HRF
Sbjct: 510 VLEDLGIED-VCLVGVAKGPHHGREGREVFHMMDGSERMLPVNAPLLFYLQRLRDEVHRF 568

Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
            I  HR +R KA   SPLDE+ GIGP RK+ LL  FGT + +  +S E L    G+S+ +
Sbjct: 569 VIGAHRDKRAKAIGASPLDEVPGIGPARKKALLMHFGTGRAVRNASLEDLRKAPGVSQAV 628

Query: 600 ACKIYNHFH 608
           A ++Y+ +H
Sbjct: 629 AQQVYDFYH 637


>gi|41407244|ref|NP_960080.1| excinuclease ABC subunit C [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81414507|sp|Q741E5|UVRC_MYCPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|41395595|gb|AAS03463.1| UvrC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 647

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 191/639 (29%), Positives = 307/639 (48%), Gaps = 35/639 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     N   R   M++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADVANLHPRTRQMVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  NTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCSAPCIGRVSAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG       ++ + MN A  + D+E A   RD L AL         +  
Sbjct: 193 RQIVDDFCDFLSGKTDRFARELEQQMNAAAAELDFERAARLRDDLGALKRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK---TDSESTNAQILSYFLRQFY 294
                D  +   ++  A +Q      G+ RG   + ++      +S   Q++  FL QFY
Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKSADPGDSGEEQLVEQFLTQFY 312

Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
            +             P P  +L+         L        G +V + VP++G+KR + E
Sbjct: 313 GEQAELGGAADESVNPVPREVLVPCLPSNADELTSWLSGLRGSRVALRVPRRGDKRALAE 372

Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398
               NA  +  Q               L++  +   L   P RIE  D SH+ G   VG 
Sbjct: 373 TVQRNAKEALQQHKLKRAGDFNARSAALQNIQEALGLSEAPLRIECVDISHVQGTDVVGS 432

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQ 456
           +VV  +    K+ YR F +     + + DD A +  V  RRF++ +  + + N   P+ +
Sbjct: 433 LVVFEDGLPRKSDYRHFAIREAAGQGRSDDVASIAEVTRRRFARHLSEQNDPNMLSPEGK 492

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
              F   P++ ++DGG  Q++AA  VL++L + + + +I +AK  +     E +   + +
Sbjct: 493 SRRFAYPPNLYVVDGGAPQVNAASAVLEELGITD-VAVIGLAKRLE-----EVWVPSEPD 546

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575
            +++      LY +QR+RDEAHRFAIT HR +R K    S LD + G+G  R++ L+  F
Sbjct: 547 PVIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSKRMTASVLDSVPGLGEHRRKALVSHF 606

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           G++  +  ++ + + ++ GI    A  +      + S  
Sbjct: 607 GSIARLKEATVDQITAVPGIGVATATAVLEALRPDESKA 645


>gi|237808305|ref|YP_002892745.1| excinuclease ABC, C subunit [Tolumonas auensis DSM 9187]
 gi|237500566|gb|ACQ93159.1| excinuclease ABC, C subunit [Tolumonas auensis DSM 9187]
          Length = 614

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/618 (34%), Positives = 342/618 (55%), Gaps = 30/618 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + + E PGVY+M D  G ++YVGKA NL+KR+ SY  +N  + +   ++S I +I+ TV
Sbjct: 15  LKVVTEQPGVYRMTDNTGCIIYVGKAKNLKKRLSSYFRTNVDSAKTRALVSNIADIQITV 74

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N+IK+ +P++NILLRDDKS+PYI ++  H  P L  HR +   +G YF
Sbjct: 75  TLTETEALILEHNLIKQHRPKYNILLRDDKSYPYIFLS-SHPHPRLSLHRGARKQKGEYF 133

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+ S  AV+++++++Q+ F +R C DS + +R+RPCLL+Q+KRCSGPC    +S  +YM
Sbjct: 134 GPYPSGYAVKESLHAMQKIFPIRQCEDSFYANRSRPCLLYQLKRCSGPCVPGLVSDAQYM 193

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E V+ A+ FL G +  +   +A  M QA+ +  +E A   RD++  +  IQ         
Sbjct: 194 EQVNLARMFLQGKDQQVIALLANKMEQASTELRFEDAAKLRDQIQNMRKIQEQQSVSGNI 253

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---- 294
           ++ +D         +A +   F   G+  G+  +F    ++S  +++L  F++QFY    
Sbjct: 254 FDDLDIIGTAIRNGIASVHVLFIRQGKVLGSRNYFPSLPADSDISELLYAFVQQFYLSDI 313

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           + K  P+ I+L  E E+   L     +  G KV+IT   + E+ +  + A  NA  +   
Sbjct: 314 SGKQLPKEIILDHELEDEDGLSEMLSQISGAKVRITSRTRSERARYCQLATTNAEAALNS 373

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           KL+ + + +   +   +   L    +R+E +D SH  G + V   VV    G   ++YR 
Sbjct: 374 KLAHKTTVEQRFRQLQEILNLTTPVQRMECFDISHTQGEATVASCVVFDREGPRNSEYRL 433

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +N+    +   DD A M+  L RRFS+    E+                PD++ +DGG G
Sbjct: 434 YNIEG--ITPGDDYAAMKQALFRRFSKQQDAEK---------------IPDILFIDGGLG 476

Query: 475 QLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           QL  A+ V+  L   V+ +  +I IAKG  R  G+E        E + L    P L+ IQ
Sbjct: 477 QLKQAESVVSDLIHLVQKQPLLIGIAKGESRKPGLETLIFGNTHEEIHLPADMPALHLIQ 536

Query: 532 RLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+HRFAIT HR+RR KK   S L+++ G+G  R++ LL+  G ++ I R++P+ LA
Sbjct: 537 HIRDESHRFAITGHRQRRNKKRTESLLEKVPGVGAKRRQALLKYLGGMQEIIRATPDELA 596

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A  IY+  H
Sbjct: 597 KVPGISPALARVIYDTLH 614


>gi|260598407|ref|YP_003210978.1| excinuclease ABC subunit C [Cronobacter turicensis z3032]
 gi|260217584|emb|CBA31833.1| UvrABC system protein C [Cronobacter turicensis z3032]
          Length = 610

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 218/618 (35%), Positives = 337/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D +G V+YVGKA +L+KR+ SY  SN  + +   +++QI NI  TV
Sbjct: 11  LKTVTSQPGVYRMYDASGTVIYVGKAKDLKKRLASYFRSNLASRKTEALVAQIQNIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-GDTHPRLATHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEDYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V   + FL+G +  +  ++   M QA+    +E A   RD++ A+  +        N 
Sbjct: 190 QQVEYVRLFLAGKDDQVINQLVSRMEQASQNLAFEEAARLRDQIQAVRRVTEKQFVSNNG 249

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
              D   +     +AC+   F   G+  G+ +++ K  S +  A+++  F+ QFY     
Sbjct: 250 DDLDVIGVAFESGMACLHVLFIRQGKVLGSRSYYPKVPSGTELAEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL        LL  +  +  G +V +    +G++ + ++ A  NA  + T +
Sbjct: 310 MRTLPGEILLDFPLTTPELLAETLTEIAGRRVNVQTRPRGDRARYLKLARTNAATALTTR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L    +   LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTISQRLTALAQALHLPEIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PD++++DGGKGQ
Sbjct: 429 NITD--ITPGDDYAAMNQVLRRRYGKAIEESK---------------VPDIILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           LS A+ V  +L+V   ++   ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LSQAKTVFAELDVPWDKHHPLLLGVAKGSDRKAGLETLFLEPEGEGFALPSDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HRK+R K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHNHAITGHRKKRAKVKNTSTLETIEGIGPKRRQMLLKYMGGLQPLLNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KIY    
Sbjct: 592 KVPGISQALAEKIYYSLK 609


>gi|15677192|ref|NP_274345.1| excinuclease ABC subunit C [Neisseria meningitidis MC58]
 gi|24212619|sp|Q9JZ26|UVRC_NEIMB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|7226569|gb|AAF41701.1| excinuclease ABC, subunit C [Neisseria meningitidis MC58]
          Length = 617

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 221/617 (35%), Positives = 335/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  + +G VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 17  LKNLPNLPGVYRFFNESGNVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 76

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 77  TRSESEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 135

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 136 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 195

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 196 SVREAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 255

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  L C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 256 NNPNDIDLLALAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 315

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 316 LGKSKPD--IIISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVRLKMAEQNAQMAIAQ 373

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 374 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 433

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WPD V++DGGK
Sbjct: 434 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPDAVLIDGGK 482

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P L+ +Q 
Sbjct: 483 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQT 540

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 541 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEK 600

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IYNH H
Sbjct: 601 VEGISKALAETIYNHLH 617


>gi|296284355|ref|ZP_06862353.1| excinuclease ABC subunit C [Citromicrobium bathyomarinum JL354]
          Length = 651

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 258/611 (42%), Positives = 361/611 (59%), Gaps = 11/611 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+MLD  G VLYVGKA +L+ R+ +Y   N  T+R+  M+SQ  ++    T 
Sbjct: 47  TLPPRPGVYRMLDARGDVLYVGKARSLKARVANYTQINALTNRLQRMVSQTRSMEIVTTN 106

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E  ALLLEA  IKR +P FN+LLRDDKSFP+IL+   H  P ++KHR +   +G+Y+GP
Sbjct: 107 SEAGALLLEAQFIKRYRPPFNVLLRDDKSFPFILLRADHSFPRIHKHRGARRAKGNYYGP 166

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  +V KT+N+LQ+ F LRSC DS F +R RPCLL+QIKRCS PC G I  + Y E V
Sbjct: 167 FASAGSVNKTLNALQKLFLLRSCTDSFFNNRDRPCLLYQIKRCSAPCVGRIDEDGYEELV 226

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            +AK FL G + ++++ + + M +A  K D+E+A I RDRL A + IQ            
Sbjct: 227 QQAKDFLGGKSSSVQQDLEKQMAEAAEKLDFETAAILRDRLRAATFIQGAQAVNATGVGD 286

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F+L        +Q  F   GQN G   FF     +    ++L+  + QFY + P P 
Sbjct: 287 ADVFALAAKGGQIAVQAFFIRGGQNWGHRAFFPTHTQDVDKDEVLARVIMQFYEEVPPPR 346

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +L+  E  E  LL  +  +   +KV+I+VP++G++R+++EQA  NA  +  ++L+   +
Sbjct: 347 TLLVDRELPEAELLTQALCEMAEHKVEISVPQRGDRRRLMEQAQRNAVDALDRRLAETGT 406

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              + +D  +   L   P+RIEIYDNSHI G  AVG MVV G  GF K QYRKFN+    
Sbjct: 407 KAKLNRDLAEFLELEEPPQRIEIYDNSHIQGAKAVGAMVVAGPEGFEKGQYRKFNIKSAQ 466

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD  MMR V++RRF  L    EN +    K+      WPD+V+LDGGKGQ+S  + 
Sbjct: 467 T--NDDFGMMREVMQRRFRNL---AENPDGEEGKRNTHETVWPDLVLLDGGKGQMSTVRD 521

Query: 482 VLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            L ++ ++N + +I+IAKGP     G E F    G    L +  P+L+ +Q LRDE HR+
Sbjct: 522 TLAEMGIDN-VPLIAIAKGPDHGREGREVFHFPDGREKTLPVNSPLLFHLQNLRDEVHRY 580

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
            I  HR +R +A   SPLDEI GIGP RKR LL  FGT   +  ++ + L    GIS  +
Sbjct: 581 VIGAHRAKRSRAITASPLDEIPGIGPARKRALLLHFGTAGKVRAAALDDLKRAPGISDAV 640

Query: 600 ACKIYNHFHKN 610
           A +IY+ +H N
Sbjct: 641 AQQIYDFYHAN 651


>gi|167034667|ref|YP_001669898.1| excinuclease ABC subunit C [Pseudomonas putida GB-1]
 gi|166861155|gb|ABY99562.1| excinuclease ABC, C subunit [Pseudomonas putida GB-1]
          Length = 585

 Score =  538 bits (1386), Expect = e-151,   Method: Composition-based stats.
 Identities = 208/603 (34%), Positives = 329/603 (54%), Gaps = 25/603 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D   R+LYVGKA NL+KR+ SY        +   ++++I  +  T+T  E EALLLE 
Sbjct: 1   MFDGEARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVARIAQVETTITANETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N+IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  A+ ++
Sbjct: 61  NLIKEWRPPYNILLRDDKSYPYVFLSDGE-FPRLGIHRGAKKAKGRYFGPYPSAGAIRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ LQ+ F +R C DS + +RTRPCL +QIKRC GPCT  +S+E+Y E V  +  FL G 
Sbjct: 120 LSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCTDLVSAEEYAEDVRHSVMFLEGR 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252
           +  L  ++   M +A +  ++E A   RD++A L  +Q+          +D  + + N  
Sbjct: 180 SQQLGNELNAEMEKAAMALNFEKAAELRDQIALLRRVQDQQYIEGGNGDVDVIAAFVNPG 239

Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENILLSEEA 309
            AC+       G+  G+  FF +   E   A++++ FL Q+Y        P  ++++   
Sbjct: 240 GACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYLGNAERELPGELIVNVVH 299

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369
           E+   +  +     G ++ I+   +G + +  + A+ NA ++   +L+         +  
Sbjct: 300 EDFDAITEALHTLRGRELTISHRVRGTRARWQQLAVTNAEQALNARLANRQHMAARFEAL 359

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429
            +   L  +P+R+E YD SH  G + V   VV G  G +K+ YR+FN+    V   DD A
Sbjct: 360 AEVLGLDEVPQRLECYDISHSSGEATVASCVVFGPEGPLKSDYRRFNIEG--VTAGDDYA 417

Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
            M   L RR+ ++   E  L              PDV+++DGGKGQL+ A+ V+++L   
Sbjct: 418 AMHQALTRRYGRIKDGEGKL--------------PDVLLVDGGKGQLNMARDVMQELGFT 463

Query: 490 NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
           + +T++ +AKG  R AG E  ++        L      L+ IQ++RDEAHRFAIT HR R
Sbjct: 464 D-LTLLGVAKGVTRKAGFETLYLNDVHHEFTLKGDSSALHLIQQIRDEAHRFAITGHRAR 522

Query: 549 RKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R KA   S L+++ G+GP R+R LL+ FG ++ ++R+S + +A   GISKK+A  IY   
Sbjct: 523 RGKARRVSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAESIYASL 582

Query: 608 HKN 610
           H  
Sbjct: 583 HSE 585


>gi|183598704|ref|ZP_02960197.1| hypothetical protein PROSTU_02116 [Providencia stuartii ATCC 25827]
 gi|188020895|gb|EDU58935.1| hypothetical protein PROSTU_02116 [Providencia stuartii ATCC 25827]
          Length = 610

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 218/619 (35%), Positives = 336/619 (54%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  +N  + +   ++  I +I  TV
Sbjct: 11  LKTVTNQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRTNVSSRKTEQLVKNIASIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++ K   P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-KETHPRLSMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  +Q+ F +R C DSV+++R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNSYAVRETLALMQKLFPIRQCEDSVYKNRSRPCLQYQIGRCLGPCVKGLVSDEEYE 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
           + V+  + FL+G +  +   +   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVNYVRLFLTGKDQQVLTGLIERMEKASQALRFEEAARFRDQIQAVRAVTEQQFVSGDS 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
           + +D   +     LACI   F   G+  G+ +++ K  +++   +++  FL QFY     
Sbjct: 250 DDLDVIGVAFEAGLACIHVLFIRQGKVLGSRSYYPKIPADTLLEEVVQTFLGQFYLQGSE 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           ++  P  ILL     E +LL  S     G K++I    +G + + ++ A  NA  +   K
Sbjct: 310 NRTLPGEILLDFALPEKTLLADSLSHIAGRKIQIQTQPRGARARYLKLARTNASTALLTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+ + +    +    K   L  I  R+E +D SH MG   V   VV  +NG VK++YR++
Sbjct: 370 LAQQSTIHQRMSSLAKTVGLDSIA-RMECFDISHTMGEQTVASCVVFDKNGPVKSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I   +                PD++ +DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMHQVLTRRYGKHIDESK---------------VPDIIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V   L+V+   NR  +I +AKG  R AG+E  F   +GE + L    P L+ IQ
Sbjct: 472 LGQAKDVFNSLDVDWDKNRPLLIGVAKGSDRKAGLETLFFKPEGEGVALPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHNHAITGHRQRRAKVKNTSALESIEGVGPKRRQMLLKYMGGLQPLKNASIEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            +  IS  +A KIYN   +
Sbjct: 592 KVPSISYALAEKIYNALKQ 610


>gi|217970707|ref|YP_002355941.1| excinuclease ABC subunit C [Thauera sp. MZ1T]
 gi|217508034|gb|ACK55045.1| excinuclease ABC, C subunit [Thauera sp. MZ1T]
          Length = 605

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 201/609 (33%), Positives = 313/609 (51%), Gaps = 26/609 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + E PGVY+M+    +VLYVGKA NL++R+ SY      + RI  M++Q+  +  T T 
Sbjct: 18  TLTEEPGVYRMIGADDKVLYVGKAKNLKRRVSSYFQKTVSSPRIAMMVAQVLRVDITATR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+IK L PR+NIL RDDK++PYI ++     P L  HR + T    YFGP
Sbjct: 78  SEAEALILENNLIKSLAPRYNILFRDDKTYPYIELSADE-FPRLAYHRGAFTKGARYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +  AV ++I+ LQ+TF LR+C ++VF +R+RPCLL QIKRC+ PC   +    Y   V
Sbjct: 137 FPNAWAVRESIHLLQKTFQLRTCENTVFANRSRPCLLHQIKRCTAPCVSLVEPAAYAADV 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + + +   M  A  +  +E A   RD++  L  + +       +   
Sbjct: 197 KLATRFLDGQASEVIDDLTNRMQAAAERLAFEEAAACRDQVRVLQAVLHKQFVDSRKDED 256

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +      L C+       G++ G    F    + S     L  F+ Q Y+  P P 
Sbjct: 257 VDVLAAIEADGLTCVNIAMVRGGRHLGDRPQFPSGAAVSGAVDSLLAFVEQHYSQHPIPA 316

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            IL++   E       +  +       +  P+   ++  +E A  NAH +   +      
Sbjct: 317 RILVNLPPEAVK---ETLAEITERPPGVVSPRFEAEKAWMEMAEKNAHLAIQARARDTGR 373

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +  L+   +   +   P+RIE +D SH MG + V   VV       + +YR++N+    
Sbjct: 374 IEQRLEALREALGMDEAPQRIECFDISHTMGEATVASCVVCEAGAMKRAEYRRYNI--AG 431

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A MR  LERR+ ++   E                 PD++++DGGKGQ+SAA+ 
Sbjct: 432 ITGGDDFAAMRQALERRYGKVAAGE--------------GVCPDLILIDGGKGQVSAARA 477

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRF 540
           +L ++ +E  + ++ +AKG  R AG+E      G   L L      L+ I  +RDEAHRF
Sbjct: 478 ILAEVGLE-AVAMVGVAKGEGRKAGLETLIFPDGREGLALGGESAALHLIVEIRDEAHRF 536

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR +R KA   S L+++ G+GP R+R LL +FG +  +  ++ E L  +EG+S+K+
Sbjct: 537 AITGHRAKRAKARVGSKLEDVPGVGPSRRRNLLAAFGGLDGVREATVEDLCRVEGVSRKL 596

Query: 600 ACKIYNHFH 608
           A +I+    
Sbjct: 597 AEQIHAALR 605


>gi|254775803|ref|ZP_05217319.1| excinuclease ABC subunit C [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 647

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 191/639 (29%), Positives = 307/639 (48%), Gaps = 35/639 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     N   R   M++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADVANLHPRTRQMVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  NTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLIVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCSAPCIGRVSAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG       ++ + MN A  + D+E A   RD L AL         +  
Sbjct: 193 RQIVDDFCDFLSGKTDRFARELEQQMNAAAAELDFERAARLRDDLGALKRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK---TDSESTNAQILSYFLRQFY 294
                D  +   ++  A +Q      G+ RG   + ++      +S   Q++  FL QFY
Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKSADPGDSGEEQLVEQFLTQFY 312

Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
            +             P P  +L+         L        G +V + VP++G+KR + E
Sbjct: 313 GEQAELGGAADESVNPVPREVLVPCLPSNADELTSWLSGLRGSRVALRVPRRGDKRALAE 372

Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398
               NA  +  Q               L++  +   L   P RIE  D SH+ G   VG 
Sbjct: 373 TVQRNAKEALQQHKLKRAGDFNARSAALQNIQEALGLSEAPLRIECVDISHVQGTDVVGS 432

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQ 456
           +VV  +    K+ YR F +     + + DD A +  V  RRF++ +  + + N   P+ +
Sbjct: 433 LVVFEDGLPRKSDYRHFAIREAAGQGRSDDVASIAEVTRRRFARHLSEQNDPNMLSPEGK 492

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
              F   P++ ++DGG  Q++AA  VL++L + + + +I +AK  +     E +   + +
Sbjct: 493 SRRFAYPPNLYVVDGGAPQVNAASAVLEELGITD-VAVIGLAKRLE-----EVWVPSEPD 546

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575
            +++      LY +QR+RDEAHRFAIT HR +R K    S LD + G+G  R++ L+  F
Sbjct: 547 PVIMPRNSEELYLLQRVRDEAHRFAITYHRSKRSKRMTASVLDSVPGLGEHRRKALVSHF 606

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           G++  +  ++ + + ++ GI    A  +      + S  
Sbjct: 607 GSIARLKEATVDQITAVPGIGVATATAVLEALRPDESKA 645


>gi|90416100|ref|ZP_01224033.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2207]
 gi|90332474|gb|EAS47671.1| excinuclease ABC subunit C [marine gamma proteobacterium HTCC2207]
          Length = 607

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 221/616 (35%), Positives = 342/616 (55%), Gaps = 25/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + + + PG+YQM +  G +LYVGKA NL+ R+ SY      + +   ++ +I  I  TV
Sbjct: 9   LKSLTQRPGIYQMFNGEGEILYVGKAKNLKNRVSSYFRKTGLSPKTAALVKRIEQIDVTV 68

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N+IK+ +P FNIL+RDDKS+PYIL+TDK K P L  HR +   +G+YF
Sbjct: 69  TETETEALILEHNLIKQRRPPFNILMRDDKSYPYILLTDKDKWPRLAFHRGAKKAKGTYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF SV AV +T++ LQ+TF +R C DS F +R+RPCL +QIKRC+ PC   +S E Y  
Sbjct: 129 GPFPSVYAVRETMSFLQKTFKVRQCEDSFFSNRSRPCLQYQIKRCTAPCVEFVSPEDYAA 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241
            V+  + +L G    + +++  +M +A     +E A   RD++AAL  IQ        + 
Sbjct: 189 DVNVTRLYLDGKGDKILKQLEGDMVKAAEALAFEKAAETRDQIAALRQIQTQQVIEKGKG 248

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296
            +D  +   N   AC+   +   G+  G+ +++ K        ++L  FL   Y      
Sbjct: 249 TIDVVAGAINNGQACVHMLYIRQGRILGSRSYYPKAPLAQNVGELLDDFLPLLYLAGGGR 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ ILL+ E +    L  +   Q   K++I    +G + K IE A   A ++   KL
Sbjct: 309 PDLPKEILLNAEIDSAETLTEALELQVQRKLEIRHSVRGFRAKWIELAERTAEQNLAGKL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           +++ S +  ++   +   L  +P+RIE +D SH  G + V   VV   +G VK+ YR+FN
Sbjct: 369 ASKQSQEKRMESLRETLELESLPERIECFDISHSSGEAVVASCVVFDASGAVKSDYRRFN 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M   + RR+++L+K E  L              P+++++DGGKGQ+
Sbjct: 429 IEG--ITGGDDYAAMEQAIRRRYTRLMKGEGKL--------------PEILLIDGGKGQI 472

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRD 535
             A+ VL  L V   + I+ +AKG  R AG E   +      ++   +   L+ IQ++RD
Sbjct: 473 GIAKEVLADLGVVG-VMILGVAKGTTRKAGFETLILADQNNRVIARPQQAALHLIQQIRD 531

Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT H+ RR KK   SPL+ I G+GP R+R LL+ FG ++ + ++S   L  +  
Sbjct: 532 EAHRFAITGHKARRDKKRRTSPLEGIPGVGPTRRRDLLKHFGGIREVQKASVADLMKVPN 591

Query: 595 ISKKIACKIYNHFHKN 610
           ISKK+A +IY+  + +
Sbjct: 592 ISKKVADEIYSALYND 607


>gi|183982240|ref|YP_001850531.1| excinuclease ABC (subunit c-nuclease) UvrC [Mycobacterium marinum
           M]
 gi|229558460|sp|B2HP72|UVRC_MYCMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|183175566|gb|ACC40676.1| excinuclease ABC (subunit c-nuclease) UvrC [Mycobacterium marinum
           M]
          Length = 647

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 188/638 (29%), Positives = 300/638 (47%), Gaps = 35/638 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   M++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADIAHLQPRTRQMVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P + +T     P L  +R        YFG
Sbjct: 73  NTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEDFPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S E++
Sbjct: 133 PYSHAWAIRETVDLLTRVFPARTCSMGVFKRHKQIDRPCLLGYIDKCSAPCIGRVSKEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG       ++ + MN A    D+E A   RD  +AL         +  
Sbjct: 193 RQIVDDFCDFLSGKTDRYARELEQQMNAAAENLDFERAARLRDDRSALKRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST---NAQILSYFLRQFY 294
                D  +   ++  A +Q      G+ RG   + ++  S        Q++  FL QFY
Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWVVEKPSAPDVSVEEQLVEQFLAQFY 312

Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
            D             P P  +L+         L        G +V + VP++G+KR + E
Sbjct: 313 GDQAELGGAADESVNPVPREVLVPCLPSNADQLSSWLSGLRGSRVTLRVPRRGDKRALAE 372

Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398
               NA  +  Q               L++  +   L   P RIE  D SH+ G   V  
Sbjct: 373 TVQRNAKEALQQHKLKRAGDFNARSAALQNIQEALGLADAPLRIECVDISHVQGTDVVAS 432

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQ 456
           +VV  +    K+ YR F +     + + DD A +  V  RRF + +  + + N   P+ +
Sbjct: 433 LVVFEDGLPRKSDYRHFAIREAAGQGRSDDVASIAEVTRRRFQRHLSEQNDPNLLSPEGK 492

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
              F   P++ ++DGG  Q++AA  VL++L + + + +I +AK  +     E +   + +
Sbjct: 493 SRRFAYPPNLYVVDGGAPQVNAASAVLEELGIVD-VAVIGLAKRLE-----EVWVPSEPD 546

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575
            +++      LY +QR+RDEAHRFAIT HR +R K    S LD + G+G  R++ L+  F
Sbjct: 547 PIIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSKRMTASALDAVPGLGEHRRKALVTHF 606

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           G++  +  ++ + + ++ GI    A  +      +   
Sbjct: 607 GSIARLKEATVDQITAVPGIGVATATAVLEALRPDQPG 644


>gi|296314486|ref|ZP_06864427.1| excinuclease ABC subunit C [Neisseria polysaccharea ATCC 43768]
 gi|296838789|gb|EFH22727.1| excinuclease ABC subunit C [Neisseria polysaccharea ATCC 43768]
          Length = 628

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 222/617 (35%), Positives = 338/617 (54%), Gaps = 27/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNFIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V EA  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVREAVTFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  + C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTQNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+ I++S      +L E    + +G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD-IIISNFPMPDALKEALESE-HGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + S Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSSQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+     K  DD A MR VL RR+ ++ + E N              WP+VV++DGGK
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGET---------VKWPNVVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           GQ+  A  V ++L +   I ++ IAKGP+R AGME+  +    E   L+   P L+ +Q 
Sbjct: 494 GQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTSEVFRLHPHSPALHLLQT 551

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFAIT HRK+R KA   S L +I G+G  R++ LL  FG ++ +  +S E L  
Sbjct: 552 VRDESHRFAITGHRKKRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQ 611

Query: 592 IEGISKKIACKIYNHFH 608
           +EGISK +A  IY H H
Sbjct: 612 VEGISKALAETIYEHLH 628


>gi|325983074|ref|YP_004295476.1| UvrABC system protein C [Nitrosomonas sp. AL212]
 gi|325532593|gb|ADZ27314.1| UvrABC system protein C [Nitrosomonas sp. AL212]
          Length = 605

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 224/612 (36%), Positives = 337/612 (55%), Gaps = 28/612 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M++  G V+YVGKA +L+KR+ SY   +N   R   M+SQI  I  TVT 
Sbjct: 14  SLPLQPGVYRMINAKGEVIYVGKAVSLKKRVASYFQKSNLAPRTQLMVSQITGIETTVTR 73

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK LKPR+NIL RDDKS+PY++++  H+ P L  +R +      YFGP
Sbjct: 74  SEAEALLLENNLIKSLKPRYNILFRDDKSYPYVILS-GHEFPRLGFYRGALDKTHQYFGP 132

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +   V ++I  LQ+ F LR+C DSVF +RTR CLL+QIKRCS PC   IS ++Y   V
Sbjct: 133 YPNAGMVRESIQLLQKVFRLRTCEDSVFSNRTRACLLYQIKRCSAPCISRISRQEYQTDV 192

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY----- 239
             A+ FL G    + E I   M QA+ + +YE A   RD++ AL  I+            
Sbjct: 193 KNAEMFLQGKQTEVMEMINVKMQQASERLEYEQAAALRDQVQALRRIREKQFVDSGKALD 252

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            + + C          C+       G++ G  +FF +   + +   ++  FL Q Y ++ 
Sbjct: 253 ADVVVCVVSPDGSGKVCVNLAMIRGGRHLGDKSFFPQNADDYSAVNVVEAFLAQHYLNRS 312

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I++ E+ E  +L  +   ++ G+K+ + +   GEKR  ++ A  NAH +  Q +S 
Sbjct: 313 VPPLIIVGEKIEREALQTL-LTEECGHKITLQLNPVGEKRVWLDMATENAHLALKQMMSR 371

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             + +  L    ++  +P   +RIE +D SH +G + V   VV        N+YR++N+ 
Sbjct: 372 HANQEKRLLALQQELQMP-GLQRIECFDISHTLGEATVASCVVYDNFAMRNNEYRRYNIE 430

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   DD A MR  L RR+ ++I  E                 PD++++DGGKGQ+SA
Sbjct: 431 G--ITPGDDYAAMREALSRRYQKVISGE--------------GQLPDLILIDGGKGQVSA 474

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEA 537
           AQ  L++L + +  +++ +AKG +R  G+E+       + L L      L+ IQ++RDEA
Sbjct: 475 AQEALQELGINDA-SLLGVAKGEQRKPGLEQLISPLFEKPLQLPSEHAALHLIQQIRDEA 533

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI  HR RR KA   S L+ I G+G  R++ LL  FG +K +  +S E L   EGIS
Sbjct: 534 HRFAIQGHRGRRGKARTSSSLETIEGVGAKRRQRLLGRFGGLKGVLTASIEELQQTEGIS 593

Query: 597 KKIACKIYNHFH 608
           +K+A KIY   H
Sbjct: 594 RKLAEKIYRELH 605


>gi|297561956|ref|YP_003680930.1| excinuclease ABC, C subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846404|gb|ADH68424.1| excinuclease ABC, C subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 675

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 188/643 (29%), Positives = 315/643 (48%), Gaps = 46/643 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D +GRV+YVGKA NL+ R+ SY         R   M+S   ++ +T+ 
Sbjct: 13  SIPTDPGVYRFRDSSGRVIYVGKAKNLRSRLSSYFRDFAGLHPRTQQMVSTAADVDWTIV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK+  PRFN+  RDDKS+PY+ +T + + P +   R +      YFG
Sbjct: 73  GTEVEALQLEYSWIKQYDPRFNVKYRDDKSYPYLAVTLQEEFPRVQVMRGAKRRGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F +R+C+  VF   R+  RPCLL  I +C  PC G+ S E +
Sbjct: 133 PYSHAWAIRETVDLLLRVFPVRTCSPGVFRGARNSGRPCLLGYIGKCVAPCVGKASPEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
                +   FL+G       ++   M +A  + +YE A   RD + AL            
Sbjct: 193 RALAEDFCSFLAGDTGRFLRELEGRMREAAGEMEYERAARIRDDIEALRAALEKQAVVLP 252

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  ++  ++  A +Q      G+ RG   + +   ++    ++++ FL Q Y   
Sbjct: 253 DSTDCDVIAVADDQLEAAVQIFHVRGGRIRGQRGYVVDKVADDGPGELIATFLGQIYGPT 312

Query: 295 --------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
                   T    P  +L+S E  +   +     +  G  V + VP++G+K+ ++E    
Sbjct: 313 RGDDESGGTGTAVPREVLVSHEPADPEAMAAWLSEHRGSSVDLRVPQRGDKKSLMETVAK 372

Query: 347 NAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402
           NA  S  +  +       +    L++  +   LP  P RIE +D S++ G   V  MVV 
Sbjct: 373 NAAESLARHKTHRAGDLSTRGRALQEIQEALELPEAPLRIECFDISNLQGEHVVASMVVF 432

Query: 403 GENGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNF--------- 451
            +    K++YR+F++  +      Q D A M  V+ RRF + ++                
Sbjct: 433 EDGLARKSEYRRFSVRGSGEGGREQHDVAAMYEVVHRRFRRYLEESARSGEVARMGETGD 492

Query: 452 ------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505
                   +     F   P++V++DG + Q  AA+  L +L +E+ + +  +AK  +   
Sbjct: 493 HGGHQSDDEPSPGKFAYPPNLVVVDGARPQAEAARRALDELGIED-VAVCGLAKRLE--- 548

Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIG 564
             E +     + ++L      LY +QR+RDEAHRFAI  HR +R KA   S LDE+ G+G
Sbjct: 549 --EVWLPGDEDPVILPRAGEGLYLLQRVRDEAHRFAIQYHRHKRAKALTGSSLDELPGLG 606

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           P R+  L+++FG+V+ ++ ++ E +A++ GI  K+A  ++ H 
Sbjct: 607 PSRRTALIKAFGSVRRLASATAEEIAAVPGIGPKLAEAVHAHL 649


>gi|308177691|ref|YP_003917097.1| excinuclease ABC subunit C [Arthrobacter arilaitensis Re117]
 gi|307745154|emb|CBT76126.1| excinuclease ABC subunit C [Arthrobacter arilaitensis Re117]
          Length = 647

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 198/633 (31%), Positives = 318/633 (50%), Gaps = 31/633 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA  L+ R+ SY  + +  T +   M+    ++ +
Sbjct: 10  KTSDIPTKPGVYRFRDEHGRVIYVGKAKVLRNRLTSYFANPDRLTPKTRAMVFTAGSVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  +E+EAL LE + IK   PRFNI+ RDDK++PY+ IT   K P     R        
Sbjct: 70  TVVGSELEALQLEYSWIKEYNPRFNIVFRDDKTYPYLAITLNEKYPRALVMRGDKRKGVK 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGPF    A+ +T+++L R F +RSCA  VF+      RPCLL  I +CS PC G IS 
Sbjct: 130 YFGPFYPAKAIRETLDTLLRVFPVRSCAPGVFKRAEASGRPCLLGYIDKCSAPCVGRISE 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E + +   +   F+SG      + +   M +A  + +YE A  +RD +AAL  +   N  
Sbjct: 190 EDHRQLADDLCTFMSGEATKFTKALTVKMQEAVAELEYEKAARYRDDIAALKKVFERNAV 249

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +     D F ++ ++  A +Q      G+ R    + ++  +++T A+ +   L Q Y
Sbjct: 250 VLDDRTEADIFGIHDDELEAAVQVFHVRDGRIRSQRGWVVEKVADTTEAEFVEQLLTQVY 309

Query: 295 TDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
            D     P+ IL+    EE   +     +  G KV + V ++G+K  +      NA ++ 
Sbjct: 310 ADHADRIPKEILVPALPEEIEDVTTWLTELRGSKVSLRVAQRGDKAALASTVEENAEQAL 369

Query: 353 TQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
               S       +  + +++            RIE YD SH  G + V  MVV  +    
Sbjct: 370 RLHKSKRAGDITTRSLAMQELQDALGAEQALLRIECYDASHTQGTNVVASMVVFEDGLPK 429

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE---------ENLNFHPKKQEYS 459
           K++YRKF++  +    +DD A M  V+ RRFS+ +K +         E      ++++  
Sbjct: 430 KSEYRKFSITGD--AARDDTASMYDVIYRRFSRYLKEKVDPASFATGEVEGESGEQEKKK 487

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519
           F   P +VI+DGG  Q++AAQ  +  L +++ I ++ +AK  +     E +       ++
Sbjct: 488 FSYPPSLVIVDGGPPQVAAAQKAMDDLGIDD-IPVVGLAKRLE-----ELWLPDDPFPVI 541

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTV 578
           L      LY +QRLRDEAHRFAIT HR +R K+  S  LD I G+G  ++  L + FG++
Sbjct: 542 LPRASAALYLVQRLRDEAHRFAITFHRAKRAKSMISSDLDAIPGLGKSKQAALRKHFGSM 601

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           K I  +S E L  + G+ +K+A  I +    ++
Sbjct: 602 KKIRAASVEELMDVPGVGEKLATSIKDSLEDSS 634


>gi|158321277|ref|YP_001513784.1| excinuclease ABC subunit C [Alkaliphilus oremlandii OhILAs]
 gi|189038017|sp|A8MJ06|UVRC_ALKOO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|158141476|gb|ABW19788.1| excinuclease ABC, C subunit [Alkaliphilus oremlandii OhILAs]
          Length = 621

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 199/622 (31%), Positives = 338/622 (54%), Gaps = 21/622 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
               +PE PGVY M +    ++YVGKA +L+ R++ Y  S+ NH  ++  M+S I    +
Sbjct: 7   KLRTLPEKPGVYMMRNDKNEIIYVGKAISLKNRVRQYFQSSKNHPPKVKAMVSHIVTFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK  +P++N+LLRDDK++PYI IT   + P + K R     +  
Sbjct: 67  IVTDTELEALILECNLIKENRPKYNVLLRDDKTYPYIKITTNEEYPRILKTRKVIKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+ ++ A+ +T++ +   + +R+C  ++ R   ++ RPCL + IK+C GPCTG ++ 
Sbjct: 127 YFGPYTNIGALNETLDVIHTIYPIRTCNKNIERMIANKERPCLNYHIKKCIGPCTGLVTK 186

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN-- 235
           E+Y + +H+   FL G    L  KI   M  A +  D+E+A  +RD++ AL++I      
Sbjct: 187 EEYHQMIHDIILFLDGKEDELVRKIEEKMKAAAISMDFENAARYRDQIIALNNIVEKQKI 246

Query: 236 -DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                   D  ++  N+    IQ  F   G+      F LK   + +N +I++ FL+QFY
Sbjct: 247 VSVAEQDQDVIAMAKNEGNTWIQVFFIRKGKLVQREHFILKDTEDDSNQEIIASFLKQFY 306

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349
           +     P+ IL+ E  E+ ++LE     + G KV I VP++G+K+++++    NA     
Sbjct: 307 SGATFVPKEILIEESVEDLNVLEEWLSGKRGNKVSIKVPQKGDKKELLDMVKKNALMTME 366

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           ++ T     +   +  L +  +   L  +P RIE YD S+I G  +VG MVV        
Sbjct: 367 QATTVIQLEKEKTEDTLIELAQLLDLEEVPYRIESYDISNIQGVESVGSMVVFEGGKSKN 426

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVI 468
             YR+F +    VK  +D A +  ++ RRF + ++  +++     +  E  F  +PD+++
Sbjct: 427 KDYRRFKIKT--VKGPNDYASLEEIITRRFKRGLEETQDIIEQSLEVSEGKFAIFPDLIM 484

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGG GQ+++ +  L  LN+   I +  + K  +         V +GE L +     +  
Sbjct: 485 VDGGFGQVTSVKKALHSLNL--NIPVCGMIKDDRHRTKG---LVYEGEELSIEKTSHLFR 539

Query: 529 FIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            I +++DE HRFAIT HR  RKK    S L+EI G+G  R++ L+  FG++  I  ++ E
Sbjct: 540 LITKIQDEVHRFAITYHRSLRKKTTLQSILEEIPGVGEARRKALMIHFGSIDKIKNATVE 599

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            L  ++G+++K+A  I  + +K
Sbjct: 600 ELLEVQGMNRKVAENIVEYLNK 621


>gi|117925176|ref|YP_865793.1| excinuclease ABC subunit C [Magnetococcus sp. MC-1]
 gi|117608932|gb|ABK44387.1| Excinuclease ABC subunit C [Magnetococcus sp. MC-1]
          Length = 617

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/615 (39%), Positives = 350/615 (56%), Gaps = 23/615 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             +Q+P  PGVY+  D AG++LYVGKA  L+KR+ SY +    H+ +   M+ QI  + F
Sbjct: 18  DVKQLPLKPGVYRFYDDAGQLLYVGKAKALRKRVSSYFNHLAGHSPKTVVMVKQIMRLEF 77

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T T  E +AL+LEAN+IK  +PR+N+LL+D+KS+PY+ +T  H  P L  +R     +G 
Sbjct: 78  TTTANENDALVLEANLIKAHQPRYNVLLKDNKSYPYLHLTTDHAYPRLALYRGDRKARGR 137

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           +FGP+ S  AV +T+N LQ+ F +R C DS F HR+RPCL +QI RC GPC   I    Y
Sbjct: 138 FFGPYPSAHAVRETLNWLQKIFPVRQCEDSQFNHRSRPCLQYQIHRCGGPCCDRIDVTSY 197

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V +   FL G +  L   +   M QA    D+E A   RDR+A + H+Q       +
Sbjct: 198 GAMVSQVTLFLEGKDKQLVNTLKEAMWQAAQARDFEGAARLRDRIAGIEHVQERRRLNLS 257

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
               +D  S+      A +Q  F   G N G   FFL+   E   ++IL  F+ QFY DK
Sbjct: 258 GEIDLDVMSVAVGLKKAVVQVFFIRAGINLGNRAFFLERGEEDDPSEILQAFVSQFYLDK 317

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
           P P  ILL    ++  +LE +   + G  VK+  P++GE+R+++E A+ NA ++  Q  S
Sbjct: 318 PPPPEILLEHLPQQQEMLEEALSARLGKAVKLRQPQRGERRRLLEMAVENAQQALKQYQS 377

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
           +    +  L+   + F L   P+RIEIYDNSHI    AVG MVV G +GF KNQYRKFNL
Sbjct: 378 SRDHVRTQLEALQELFNLAEPPQRIEIYDNSHIQDQHAVGAMVVFGADGFEKNQYRKFNL 437

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
             +     DD A M  VL RRF +L + E                WPD+V+LDGG  QL+
Sbjct: 438 EAS--SAPDDTARMIEVLTRRFKRLKEGE--------------GRWPDLVLLDGGIAQLN 481

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDE 536
           AA  V+++L ++  +   +IAKGP+R AG E+ F   +   L+L    P+L+F+Q +RDE
Sbjct: 482 AAMKVVEELQIDG-VAFSAIAKGPQRHAGREQLFLPDRPNPLILPHDAPLLHFLQVVRDE 540

Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           +HRF I  HR RR K    S LD I G+G  RK+ L++ FG+VK + +++   +A++ G 
Sbjct: 541 SHRFVIGYHRTRRAKGQTSSRLDGIAGVGAQRKKALIKQFGSVKGVRQATLAEIAALPGF 600

Query: 596 SKKIACKIYNHFHKN 610
           S ++A  I     ++
Sbjct: 601 STELAATILATLDEH 615


>gi|302382202|ref|YP_003818025.1| excinuclease ABC, C subunit [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192830|gb|ADL00402.1| excinuclease ABC, C subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 632

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 273/619 (44%), Positives = 372/619 (60%), Gaps = 18/619 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            + + P+ PGVY+M    G  LYVGKA +++KRI  Y     HT RI  M+S   ++   
Sbjct: 21  EARRAPDKPGVYRMYGEDGTCLYVGKARSIKKRILQYAQGRFHTQRIGLMVSLTRSMELV 80

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +E EALLLE+N IK+LKPRFN++LRDDKSF  ++I   H+ P + KHR S T  G Y
Sbjct: 81  VTASETEALLLESNFIKKLKPRFNVVLRDDKSFAELMIRKDHRAPQVRKHRGSHTTPGDY 140

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFAS  AV +T+N+LQ+ F LRSC+DSV+  RTRPC+L QIKRCS PCTG IS E Y 
Sbjct: 141 FGPFASTWAVNRTLNTLQKAFLLRSCSDSVYETRTRPCMLHQIKRCSAPCTGLISLEDYA 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             V EA  FL G +  +  +++  M  A    D+E A   RDR+ ALS I   N    + 
Sbjct: 201 GLVEEASLFLRGKSRAVISRLSGEMTAAAEAMDFEQAARVRDRIRALSAIAMENSVSADS 260

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +++     AC+Q  F+  GQN G   +F + D   T+A+ILS FL QFY DKP
Sbjct: 261 VAEADVLAVFSEGGQACVQVFFYRGGQNWGGRAYFPRVDKSDTDAEILSAFLGQFYEDKP 320

Query: 299 CPENILLSEEAEETSLLEISFFK-----QYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
            P  IL +    E  LLE +F            V I  P +G+K  +++ AL NA  +  
Sbjct: 321 VPRLILSNVVPFEKELLEEAFSMKAREVDGRRVVSIERPLRGDKHALVDHALTNAREALG 380

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +K++   +   IL +  + F L   P+RIE+YDN+HI G +AVG M+V G  GF K+QYR
Sbjct: 381 RKMAEGSAQGKILAEVCEAFGLDGTPERIEVYDNAHIQGTNAVGGMIVAGPEGFQKSQYR 440

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           KFN+   D+   DD  MMR V+ RRFS+L+K+EE       +        PD++++DGG 
Sbjct: 441 KFNIRGVDLTPGDDYGMMREVMRRRFSRLVKDEEEGAEEVVR--------PDLLLIDGGA 492

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQL+  Q VL  L +++ I  + +AKGP R AGME+FFV      +L ++ P LY+IQRL
Sbjct: 493 GQLAEVQAVLADLGLDD-ILAVGVAKGPDRDAGMERFFVPGKPPFMLPLKSPALYYIQRL 551

Query: 534 RDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFA   HR RR      +PLDEI G+GP RK+ LL +FG+ K + R++   L  +
Sbjct: 552 RDEAHRFANGAHRTRRSMDIKKNPLDEIEGVGPGRKKALLHAFGSAKGVGRAAVVDLEKV 611

Query: 593 EGISKKIACKIYNHFHKNT 611
           +GI++ +A +IY  FH  T
Sbjct: 612 DGINRALAERIYGFFHPQT 630


>gi|157961777|ref|YP_001501811.1| excinuclease ABC subunit C [Shewanella pealeana ATCC 700345]
 gi|189038093|sp|A8H3Y9|UVRC_SHEPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157846777|gb|ABV87276.1| excinuclease ABC, C subunit [Shewanella pealeana ATCC 700345]
          Length = 609

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 206/616 (33%), Positives = 326/616 (52%), Gaps = 28/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY   N    +   ++S I NI  TV
Sbjct: 11  LKTVTSSPGVYRMYDAKDAVIYVGKAKDLKKRLSSYFRKNLANVKTQALVSHIANIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E +AL+LE + IK+  P++N+LLRDDKS+PYIL+++ H+ P L  HR     +G YF
Sbjct: 71  THSETDALILENDYIKQYMPKYNVLLRDDKSYPYILLSN-HQHPRLAYHRGPKRDKGQYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV ++++ +Q+ F +R C D  ++ R+RPCL +QI RCS PC   +S E Y E
Sbjct: 130 GPYPNGGAVRESLHLMQKIFPIRQCDDLYYKSRSRPCLQYQIGRCSAPCVDLVSEEDYQE 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            V  A  FL G N  +   + + M QA+    YE A ++RD++ AL  +    +      
Sbjct: 190 QVRLATLFLKGKNQQVMSVLVQKMEQASSDMRYEQAALYRDQITALRRVSEQQEVSNASG 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC- 299
            MD    Y+   +AC    F   G+  G+ +++ K    +  +++L  F+ QFY +    
Sbjct: 250 DMDVIGAYYASGVACFHLLFIREGKIFGSRSYYPKVPVNTEVSEVLRSFMLQFYLNSDSQ 309

Query: 300 ---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ IL+S+  EE + L  +       KV+I    +GE+   +  AL NA  +   +L
Sbjct: 310 RLTPKEILISDAFEEQAELADAIQSAQNKKVEIKTQVRGERASFLRLALTNATNAVNTRL 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +       +     +  +R+E +D SH MG S V   VV    G  K  YR++N
Sbjct: 370 SHKNTIEQRFLLLEEAIESTNKIQRMECFDISHTMGESTVASCVVFNREGPSKADYRRYN 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M+  + RRF ++ +  +                PD++ +DGG GQL
Sbjct: 430 I--TGITPGDDYAAMKQAITRRFDKITEKGK---------------IPDILFIDGGIGQL 472

Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRL 533
             AQ V+ +  + ++N  T+I +AKG  R  G+E     + E    L      L+ IQ +
Sbjct: 473 RIAQKVVDEQFVALDNAPTLIGVAKGEGRKPGLETLIYGESEESFSLPADSGALHLIQHI 532

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR +R+K    S L+ I G+GP R++ LLQ  G ++ +  +S   LA +
Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLETIAGVGPKRRKALLQYLGGLQEVKGASVSELAKV 592

Query: 593 EGISKKIACKIYNHFH 608
            GIS ++A  I++   
Sbjct: 593 PGISLEMAQTIHDALR 608


>gi|291300464|ref|YP_003511742.1| excinuclease ABC subunit C [Stackebrandtia nassauensis DSM 44728]
 gi|290569684|gb|ADD42649.1| excinuclease ABC, C subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 708

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 198/629 (31%), Positives = 313/629 (49%), Gaps = 30/629 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA +L++R+ SY         R   M+    ++ + V 
Sbjct: 27  TIPESPGVYRFRDTDGRVIYVGKAKSLRQRLNSYFADPTKLHPRTYQMVHTATSVDWVVL 86

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK+  PRFN++ RDDKS+PY+ +T   + P L   R        YFG
Sbjct: 87  ATEVEALQLEYTWIKKYDPRFNVMYRDDKSYPYLAVTLDEEYPRLQVMRGDRRKGVRYFG 146

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C  SVF   R   RPCLL  I +C+ PC G +S+ ++
Sbjct: 147 PYSHAWAIRETLDLLLRVFPARTCGASVFNRARKINRPCLLGDIGKCAAPCVGRVSAAEH 206

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E V E   F++G      +++   M++A+   D+E A   RD LAAL         +  
Sbjct: 207 REIVDEFCAFMAGKTDTFVKRVEAEMHEASEALDFERAARRRDDLAALHRALEKQLVVLA 266

Query: 240 ----NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY- 294
                 +D   ++ ++  A +Q      G+  G   + +      T+  ++     QFY 
Sbjct: 267 EDKGTDIDVVEMFDDELQAAVQVFHVRGGRVTGQRGWIVDKPEGVTDGDLVHSLCTQFYG 326

Query: 295 --TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
             + K  P+ +L+    E+ + L     +  G KV + +P++G+K+ + E    NA ++ 
Sbjct: 327 GRSGKDIPKEVLVPALPEDATALTDWLSELRGSKVGVRIPQRGDKKALAETVKRNAEQAL 386

Query: 353 TQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
            Q      S        L++  +   LP  P RIE +D S + G   V  MVV  +    
Sbjct: 387 VQHKLKRASDLTTRGKALEELAEALDLPGAPLRIECFDVSQMQGTDVVASMVVFEDGLPR 446

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K +YR+F +        DD A M  VL RR S++  +E         ++  F   P +++
Sbjct: 447 KAEYRRFVVRGERT---DDLASMHEVLTRRLSKV--DESAPLIDEDGKKRRFAYPPQLLV 501

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGG  Q++ A  VL +  ++  + +  +AK  +     E +   +   ++L  R   LY
Sbjct: 502 VDGGAPQVAVADNVLAEQGIDT-VNVCGLAKRLE-----EVWLPGEEYPVILPRRSEALY 555

Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +QR+RDEAHRFAI+ HRKRR KK   S LD + G+GP R++ LL+ FG+VK I  ++ +
Sbjct: 556 LLQRVRDEAHRFAISLHRKRRGKKVTASALDSVPGLGPTRRKALLRHFGSVKKIREATVD 615

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTPT 616
            +A + GI   +A  I          TPT
Sbjct: 616 EIAEVTGIGPALAATITASL--TEGATPT 642


>gi|119716752|ref|YP_923717.1| excinuclease ABC subunit C [Nocardioides sp. JS614]
 gi|119537413|gb|ABL82030.1| Excinuclease ABC subunit C [Nocardioides sp. JS614]
          Length = 666

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 197/639 (30%), Positives = 316/639 (49%), Gaps = 34/639 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P  PGVY+  D  GRV+YVGKA NL+ R+ SY     +   R   M++   ++ +
Sbjct: 19  QPGSIPTQPGVYRFRDARGRVIYVGKAKNLRARLSSYFQDVAHLHPRTATMVTTAASVEW 78

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+P++ +T   + P +   R +      
Sbjct: 79  TVVKTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPWLAVTVGEEFPRVMVGRGAKRKGTR 138

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP++   A+ +T++ L R F +RSC++ VF+      RPCLL  I +C+ PC G +++
Sbjct: 139 YFGPYSHAWAIRETVDLLLRVFPMRSCSNGVFKRSAQIGRPCLLGYIDKCAAPCVGNVTA 198

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++   V +   F++G      ++I R M  A+   D+E A   RD L AL+        
Sbjct: 199 EEHRAIVDDFCDFMAGHTTAFVKRIEREMYAASDALDFEKAARLRDDLGALNKALEKQAV 258

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  +L  +     +Q  +   G+ RG   +      E   A+++  FL Q Y
Sbjct: 259 VLGDGTDADVIALAEDPLEVAVQIFYVRGGRIRGQRGWVADRVDEGGTAELVDDFLLQLY 318

Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                   P  IL+     + +  E       G KV I VP++G+KR + E    NA ++
Sbjct: 319 AGAGADEIPREILVPALPPDVATYESLLGDLRGSKVAIRVPQRGDKRNLQETVAQNAGQA 378

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++      L  +P RIE YD S++ G   V  MVV  +   
Sbjct: 379 LALHKTKRASDLTTRNRALEEIQDALGLDEVPLRIECYDVSNLQGTEVVASMVVFEDGLA 438

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN-----------LNFHPKKQ 456
            K++YR+F +    V  Q+D A M  V+ RRF +L+  +             L      +
Sbjct: 439 RKSEYRRFVIRG--VDGQNDVASMDEVITRRFRRLLDEQGTSQSVVTESGPMLVDPETGR 496

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
              F   P +V++DGG  Q++AAQ  L +L + + I +  +AK  +     E +   + +
Sbjct: 497 PRKFAYAPGLVVVDGGPPQVAAAQRALSELGIVD-IPVCGLAKRLE-----EVWLPGQED 550

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSF 575
            ++L      LY +QR+RDEAHRFAIT HR RR K+   S LD++ G+G +R++ LL+ F
Sbjct: 551 PVILPRSSEGLYLLQRIRDEAHRFAITHHRSRRSKSMVESLLDDVPGLGEVRRKTLLKHF 610

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           G++K +  ++ + +A + GI  + A  I +   + +  T
Sbjct: 611 GSLKRLRAATVDEIALVPGIGPRTAGAIKDALARTSRET 649


>gi|212709568|ref|ZP_03317696.1| hypothetical protein PROVALCAL_00610 [Providencia alcalifaciens DSM
           30120]
 gi|212687906|gb|EEB47434.1| hypothetical protein PROVALCAL_00610 [Providencia alcalifaciens DSM
           30120]
          Length = 610

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 213/619 (34%), Positives = 335/619 (54%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY   N  + +   ++  I +I  TV
Sbjct: 11  LKTVTNQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRENLGSRKTEQLVKNIASIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++     P +  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-SETHPRISSHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF S  AV +T+  +Q+ F +R C DSV+R+R+RPCL +QI RC GPC    ++ E+Y 
Sbjct: 130 GPFPSSYAVRETLALMQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLGPCVKGLVTDEEYE 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239
           + V+  + FL+G +  +   +   M +A+ +  +E A   RD++ A+  +          
Sbjct: 190 QQVNYVRLFLTGKDKQVLTGLVERMEKASQELRFEDAARFRDQIQAVRAVTEEQYVSGGD 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
           + +D   +  +  LAC+   F   G+  G+ +++ K  + +   +++  FL QFY     
Sbjct: 250 DDLDVIGVAFDSGLACVHVLFIRQGKVLGSRSYYPKIPAGTLLEEVVQTFLGQFYLQGSE 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           ++  P  ILL     E  LL  S     G K++I    +G + + ++ A  NA  + + K
Sbjct: 310 NRTLPGEILLDFPLTEKELLAESLSDIAGRKIQIQSQPRGTRARYLKLARTNASIALSTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+ + + Q  +   +K   + +I  R+E +D SH MG   V   VV  + G VK++YR++
Sbjct: 370 LAQQSTIQQRMAALSKVVNIDNIS-RMECFDISHTMGEQTVASCVVFDKTGPVKSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + +   +                PD++ +DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMHQVLTRRYGKHLDESK---------------VPDIIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V   L V+   N   +I +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LGQAKDVFDSLEVDWDKNHPLLIGVAKGSDRKAGLETLFLKPEGEGFALPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHNHAITGHRQRRAKVKNTSALESIEGVGPKRRQMLLKYMGGLQPLRNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            +  IS  +A KIYN   +
Sbjct: 592 KVPSISYALAEKIYNALKQ 610


>gi|296445664|ref|ZP_06887619.1| excinuclease ABC, C subunit [Methylosinus trichosporium OB3b]
 gi|296256909|gb|EFH03981.1| excinuclease ABC, C subunit [Methylosinus trichosporium OB3b]
          Length = 668

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 276/619 (44%), Positives = 385/619 (62%), Gaps = 12/619 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +  P  PGVY+M+   G VLYVGKA N++KRI SY     H +RI  MIS   ++ F   
Sbjct: 51  KNAPNGPGVYRMIAGNGEVLYVGKAKNVRKRIASYTRLAGHVNRIARMISATASMMFISV 110

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLE N+IK++KPRFN+L+RDDKSFPYILI   H  P + KHR +   +G YFG
Sbjct: 111 DTETEALLLETNLIKQMKPRFNVLMRDDKSFPYILIARDHAAPQIAKHRGARARKGDYFG 170

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFA+  AV + +N+LQR F LRSC DS + +RTRPCLL+QIKRC+GPCTGEIS + Y   
Sbjct: 171 PFANAGAVGRALNALQRAFLLRSCTDSFYENRTRPCLLYQIKRCAGPCTGEISIDDYAAL 230

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240
           V EA  FL+G + +++E +A+ M +A  + ++E A   RDR++ALS IQ           
Sbjct: 231 VQEAHDFLTGKSRSVRESLAKEMTEAAERLEFERAARLRDRISALSLIQGTQGVNPRSVE 290

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++       CI+  FF   QN G   +F + D      ++L  F+ QFY + P  
Sbjct: 291 EADVFAIAKEAGRFCIEAFFFRAFQNWGDRAYFPRADQSLGEEEVLGSFVAQFYGEHPPA 350

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LLS   E+  +L  +   + G KV++  P++GEKR++++ AL NA ++ T+KL+ + 
Sbjct: 351 PLVLLSHVIEDRDILAEALTDKLGRKVEVATPQRGEKRELVDNALTNAKQTLTRKLTEDA 410

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S + +L    + F +   P+R+E+YDNSH  G  A+G M+V G  GF+K  YR FN+   
Sbjct: 411 SQEKLLVALGEMFGMATPPRRVEVYDNSHTGGQQAIGAMIVAGPTGFMKTHYRTFNIKGA 470

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFH-------PKKQEYSFPSWPDVVILDGGK 473
           ++   DD AMMR VL RRF+++ K++E  +          ++   +FPS PD+V++DGG+
Sbjct: 471 EITPGDDYAMMREVLRRRFARIAKDDEKKDAEKKDGETAAEEASDAFPSKPDLVLIDGGR 530

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQ  AA+ V  ++ +E  + I SIAKG  R+AG E FFV+  E   L   DP LYF+QRL
Sbjct: 531 GQFDAARAVAAEIGLEGVV-IASIAKGADRNAGRETFFVEGREPFRLPPHDPALYFVQRL 589

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAI THR RRKK  A +PLDEI GIGP RKR LL +FGT K ++ ++   L   
Sbjct: 590 RDEAHRFAIGTHRARRKKEFAKNPLDEIAGIGPSRKRALLLAFGTAKAVAGAALCDLEKA 649

Query: 593 EGISKKIACKIYNHFHKNT 611
            GI+K  A  +Y+HF +  
Sbjct: 650 PGINKATARLVYDHFQRGE 668


>gi|157145295|ref|YP_001452614.1| excinuclease ABC subunit C [Citrobacter koseri ATCC BAA-895]
 gi|189038036|sp|A8AFB5|UVRC_CITK8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157082500|gb|ABV12178.1| hypothetical protein CKO_01032 [Citrobacter koseri ATCC BAA-895]
          Length = 610

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 210/618 (33%), Positives = 336/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S ++Y 
Sbjct: 130 GPFPNGYAVRETLALLQKVFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEDEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K  + +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPNGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRINVQTKPRGDRARYLKLARTNAATALISK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALASVLKLPAVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LGQAKAVFAELDVPWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI+ HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAISGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KI+    
Sbjct: 592 KVPGISQGLAEKIFYSLK 609


>gi|312116178|ref|YP_004013774.1| excinuclease ABC, C subunit [Rhodomicrobium vannielii ATCC 17100]
 gi|311221307|gb|ADP72675.1| excinuclease ABC, C subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 689

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 283/653 (43%), Positives = 386/653 (59%), Gaps = 49/653 (7%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +   PGVY+M+D+AG V+YVGKA NL+ R+++Y     HT+RI  MI     + F  T
Sbjct: 35  KHLGTGPGVYRMVDLAGEVIYVGKARNLKNRVQNYTRMGGHTNRIAAMIRATATMEFVNT 94

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKR KPR+N+  RDDKSFPYI+I    +   + KHR + T++G YFG
Sbjct: 95  RTEAEALLLEANLIKRFKPRYNVSFRDDKSFPYIVIRRDQEAAQIAKHRGARTVKGDYFG 154

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+CADSV+  RTRPCLLFQIKRC+GPCT EI  + Y + 
Sbjct: 155 PFASAGAVNRTINTLQRAFLLRTCADSVYDSRTRPCLLFQIKRCAGPCTREIPLDDYSKL 214

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EA  FLSG    ++ K+   M +A    ++E A  +R+RL AL+H+Q H         
Sbjct: 215 VDEATAFLSGKTDAVQRKLNTLMEEAAEALEFERAAKYRNRLWALAHVQAHQGINPKGVE 274

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F++       CI+  FF  GQN G   +F + D   + A++L  F+ QFY DK  P
Sbjct: 275 EADVFAIAQQGGQTCIEVFFFRSGQNWGNRAYFPRADKSLSPAEVLGSFISQFYDDKLVP 334

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             + LSEE  E SL+  +   + G KV +  P++GEKR++++ A  NA  +  +KL+   
Sbjct: 335 RCVFLSEEVPEQSLISEALSTKLGRKVDVVTPRRGEKRELVDYAHQNAREALGRKLAETT 394

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S+  +L    + F L  +P+RIE+YDNSHIMG +AVG M+V G  GF KN YRKFN+   
Sbjct: 395 SNARLLAGVAQVFGLERVPRRIEVYDNSHIMGTNAVGGMIVAGPEGFAKNHYRKFNIRTA 454

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNE---------------------------------- 446
           D+   DD  MMR VL RRF +L+K                                    
Sbjct: 455 DLTPGDDFGMMREVLTRRFKRLLKEHGLPAGETAASGDTPPEAAVAAAEAGAVAAVDTSS 514

Query: 447 ----------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496
                     E  N     Q     +WPD++++DGG GQLSAA+ VL +L +   + I  
Sbjct: 515 LSPPVEEEYTEEENGDAAAQGGDLGAWPDLLLIDGGAGQLSAAREVLAELGLHG-LAIAG 573

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYS 555
           IAKGP R+AG E+FF+       L + DP+LYF+QRLRDEAHRFAI +HR +RKK    +
Sbjct: 574 IAKGPDRNAGRERFFMPGKPPFSLPLNDPVLYFVQRLRDEAHRFAIGSHRAKRKKAMTEN 633

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            LD I GIGP RKR LL+ FG+ K +SR+    L +++GIS  +A +IY+ ++
Sbjct: 634 ELDGIPGIGPTRKRALLKHFGSAKAVSRAGLSDLRAVDGISAAMAQQIYDWYN 686


>gi|125975219|ref|YP_001039129.1| excinuclease ABC subunit C [Clostridium thermocellum ATCC 27405]
 gi|256003119|ref|ZP_05428111.1| excinuclease ABC, C subunit [Clostridium thermocellum DSM 2360]
 gi|281419193|ref|ZP_06250209.1| excinuclease ABC, C subunit [Clostridium thermocellum JW20]
 gi|189038042|sp|A3DJ07|UVRC_CLOTH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|125715444|gb|ABN53936.1| Excinuclease ABC subunit C [Clostridium thermocellum ATCC 27405]
 gi|255992810|gb|EEU02900.1| excinuclease ABC, C subunit [Clostridium thermocellum DSM 2360]
 gi|281407059|gb|EFB37321.1| excinuclease ABC, C subunit [Clostridium thermocellum JW20]
 gi|316939383|gb|ADU73417.1| excinuclease ABC, C subunit [Clostridium thermocellum DSM 1313]
          Length = 625

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 200/626 (31%), Positives = 335/626 (53%), Gaps = 23/626 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             +++P+ PGVY M D  G ++YVGKA  L+ R++ Y  S +N T ++  M++ I    +
Sbjct: 7   ELKKLPDKPGVYIMKDENGEIIYVGKAVVLKNRVRQYFQSLSNQTPKVRAMVAHIKEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ +P+FNILL+DDK++PYI +T     P +   R        
Sbjct: 67  IVTDTELEALILECNLIKKHRPKFNILLKDDKNYPYIKVTMNEDFPRILMTRRVEKDGAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV +TI+ +++ F +++C+  + R   + RPCL + I +C GPC G +S E
Sbjct: 127 YFGPYTSAYAVRETIDLVKKLFPVKTCSKVLPRDIGKGRPCLNYHIYQCLGPCQGNVSKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   + +   FL G   ++ +K+ ++M +A    ++E A   RD++ +L HI      I
Sbjct: 187 EYRFMMQDVCNFLGGRQEDIIKKLEKDMKEAADNLEFERAARIRDKINSLKHIAEKQKII 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +   ++  +CIQ  F   G+  G   F L+  S+ +++++++ F++QFY+
Sbjct: 247 STAMEDQDVIAFAKSETDSCIQVFFIRGGKLIGREHFILEGTSDVSDSELMTAFVKQFYS 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  I+L E+ +E  ++E     + G K  I VP++GEK K++E    NA     Q
Sbjct: 307 SAAYVPGQIILQEDIDEMEIIEKWLSGKRGTKTYIKVPRRGEKLKLVEMVSKNALIELNQ 366

Query: 355 KLSTEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                     +    ++   +   L  +P+RIE YD S+      VG MVV       K+
Sbjct: 367 FKERIKKEAALAKEGMEKLKELLNLDRLPRRIEAYDISNTGSTEIVGSMVVFENGSPKKS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN----EENLNFHPKKQEYSFPSWPDV 466
            YR+F +   +V  Q+D   M+ V+ RR  +  K     +E       ++   F + PDV
Sbjct: 427 DYRRFKIKSINV--QNDYQSMQEVIFRRLKRAQKEMTEKDEGGGKDVGEKGAGFGTLPDV 484

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGG G ++A + VL++L+    I +  + K            V       L+    +
Sbjct: 485 LLVDGGTGHVNAVRSVLEELDF--NIPVYGMVKDDNHRTRG---LVTGEREFDLSKDIVL 539

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L F+  ++DEAHRFA+  +RK R K  + S LD I G+GP RK+ L++ FG+VK I  + 
Sbjct: 540 LRFVTAIQDEAHRFALEYNRKLRAKRYSGSVLDNIEGVGPKRKKELIRHFGSVKAIKEAE 599

Query: 586 PETLASIEGISKKIACKIYNHFHKNT 611
           P  +A ++GIS+ +A KIY++F +  
Sbjct: 600 PGEIAKVKGISRDLAQKIYDYFRQQE 625


>gi|117620499|ref|YP_857278.1| excinuclease ABC, C subunit [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561906|gb|ABK38854.1| excinuclease ABC, C subunit [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 616

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 207/614 (33%), Positives = 337/614 (54%), Gaps = 31/614 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D  G V+YVGKA +L+KR+ SY  +N  + +   ++ QI +++ TVT TE 
Sbjct: 19  HQSGVYRMYDSGGTVIYVGKAKDLKKRLASYFRANVDSIKTRTLVRQIADVQVTVTHTET 78

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL+LE N+IK+ +PR+N+LLRDDKS+P+I+IT  H+ P +  HR +  ++G YFGP+ S
Sbjct: 79  EALILEHNLIKQYQPRYNVLLRDDKSYPWIIIT-AHQHPRIGVHRGARKVKGEYFGPYPS 137

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHE 186
             AV ++++ +Q+ F +R C D+V+ +R+RPCLL+Q+KRC+GPC    +S  +Y + V  
Sbjct: 138 GGAVRESLHLMQKIFPVRQCEDAVYANRSRPCLLYQLKRCAGPCVAGLVSEAEYAQQVEL 197

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMD 243
           AK FL+G N  +  ++   M  A+    +E A  +RD++ AL  +           + +D
Sbjct: 198 AKLFLAGKNQQVIGELVGKMESASGDLRFEEAARYRDQIQALRRVTEQQSVSGNVLDELD 257

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----DKPC 299
              +   +  ACI   F   G+  G+ ++F K  +++   +++  FL QFY      +  
Sbjct: 258 VVGVAFEQGTACIHVLFIRQGKVLGSRSYFPKVPADTQLDEVVQSFLLQFYLSGQGGRQI 317

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  +LL    E+ +++  +  +  GYKV++    + E+ + I+ A INA  +   +L+ +
Sbjct: 318 PSEVLLDVALEDENVIAETLSQTAGYKVRVVSRTRAERARFIKLASINAQTALRSRLAHK 377

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +         +   L     R+E +D SH MG   V   VV    G + ++YR+FN+  
Sbjct: 378 STTTARYDQLEELLELERPIARMECFDISHTMGERTVASCVVFNREGPLSSEYRRFNI-- 435

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA- 478
           + +   DD A M   LERRF +  + ++                PDV+ +DGG GQL   
Sbjct: 436 DGITGGDDYAAMEQALERRFGKQQEPDK---------------VPDVLFIDGGLGQLRRA 480

Query: 479 --AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRD 535
                   +        ++ IAKG  R AG+E   + +  E L L    P L+ IQ +RD
Sbjct: 481 EEILARQLEFLGGKYPLLVGIAKGVTRKAGLETLILGESHEELHLPADMPALHLIQHIRD 540

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+HRFAIT HR RR KA   S L++I G+GP R++ LL+  G ++ + ++  E LA + G
Sbjct: 541 ESHRFAITGHRARRAKARTTSTLEDIPGVGPKRRQALLKYLGGLQEVKKAGVEELAKVPG 600

Query: 595 ISKKIACKIYNHFH 608
           IS+++A  I++  H
Sbjct: 601 ISQELAQSIHDALH 614


>gi|300818664|ref|ZP_07098872.1| excinuclease ABC subunit C [Escherichia coli MS 107-1]
 gi|300528836|gb|EFK49898.1| excinuclease ABC subunit C [Escherichia coli MS 107-1]
          Length = 610

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 214/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   M++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEAMVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|304321236|ref|YP_003854879.1| excinuclease ABC subunit C [Parvularcula bermudensis HTCC2503]
 gi|303300138|gb|ADM09737.1| excinuclease ABC subunit C [Parvularcula bermudensis HTCC2503]
          Length = 650

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 274/632 (43%), Positives = 376/632 (59%), Gaps = 33/632 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P  PGVY+M++  G VLYVGKA +L+ R+ SY   N H+ RI  MI +   + F 
Sbjct: 28  ELKRLPPRPGVYRMMNAEGDVLYVGKAKSLKARVASYATLNGHSTRIARMILETAAMEFV 87

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE E+LLLEAN+IK LKPR+N+LLRDDKSF  ILI   H+ P + KHR + T  G Y
Sbjct: 88  VTDTETESLLLEANLIKSLKPRYNVLLRDDKSFANILIATDHETPRIMKHRGAHTRPGHY 147

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFAS  AV +T+N+LQ+ F LRSC D+V   R+RPCLL QIKRCS PC   IS++ Y 
Sbjct: 148 FGPFASAGAVNRTLNTLQKAFLLRSCTDNVLESRSRPCLLHQIKRCSAPCVDLISTDDYS 207

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             V EA+ FL G N +++  ++R M  A    D+E A   RDR+ AL+++Q       + 
Sbjct: 208 ALVEEARAFLKGKNRDVQAALSRQMEDAAGDLDFERAAALRDRIRALTYVQESQGINISS 267

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+++ +   ACIQ+ FF  GQN G  + F +   E   A IL  F+ QFY  K 
Sbjct: 268 LEEADVFAIHADGGQACIQSFFFRAGQNLGALSHFPRHGQEEPPADILESFIAQFYDGKA 327

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  IL+SE  E  SLL  +     G++V +  P++GEK ++I Q   NA  +  ++LS 
Sbjct: 328 PPRLILVSERLENQSLLADALSTTAGHRVDVLRPERGEKAQLIVQTRNNAREALGRRLSE 387

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             S   +L     +  L   PKRIE+YDNSHI G +A+G MVV  + GF KNQYR FN+ 
Sbjct: 388 TASQTKLLMAVQDQLDLSAPPKRIEVYDNSHISGTNAIGAMVVATDEGFRKNQYRTFNIK 447

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             D+   DD  MMR VL+RRF +L+K E+  + +          WP +V++DGG GQL+A
Sbjct: 448 AEDISAGDDFGMMREVLDRRFKRLVKEEQPGSEN----------WPSLVVIDGGLGQLNA 497

Query: 479 AQGVLKKLNV-------ENRITIISIAK----------GPKRSAGM--EKFFVKKGEALV 519
           A+ VL+   +          I ++SIAK             R+A    E+FF+       
Sbjct: 498 AKSVLEDHGLLIGGDIEAGEICLLSIAKGRRENERGERRADRTAAATGEQFFLPGQTPFT 557

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTV 578
           L  R  +LY++QRLRDEAHRFAI THR +R + A  +PLD+I GIG  RK+ LL  FG+ 
Sbjct: 558 LPPRSEVLYYLQRLRDEAHRFAIGTHRAKRSREATRTPLDDIEGIGAKRKKALLHHFGSA 617

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           K ++R+  + LA++EGIS  +A +IY HFH  
Sbjct: 618 KAVARAKAKDLAAVEGISAALADRIYAHFHPE 649


>gi|330830187|ref|YP_004393139.1| UvrABC system protein C [Aeromonas veronii B565]
 gi|328805323|gb|AEB50522.1| UvrABC system protein C [Aeromonas veronii B565]
          Length = 617

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 210/614 (34%), Positives = 338/614 (55%), Gaps = 31/614 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D  G V+YVGKA +L+KR+ SY  +N  + +   ++ QI +I+ TVT TE 
Sbjct: 20  HQSGVYRMYDSGGTVIYVGKAKDLKKRLASYFRTNVDSIKTRTLVRQIADIQVTVTHTET 79

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL+LE N+IK+ +PR+N+LLRDDKS+P+I+IT  H+ P +  HR +  ++G YFGP+ S
Sbjct: 80  EALILEHNLIKQYQPRYNVLLRDDKSYPWIIIT-AHQHPRIGVHRGARKVKGEYFGPYPS 138

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHE 186
             AV ++++ +Q+ F +R C D+V+ +RTRPCLL+Q+KRC+GPC    +S  +Y + V  
Sbjct: 139 GGAVRESLHLMQKIFPVRQCEDAVYANRTRPCLLYQLKRCAGPCVAGLVSEAEYAQQVEL 198

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMD 243
           AK FL+G N  +  ++   M  A+    +E A  +RD++ AL  +           + +D
Sbjct: 199 AKLFLAGKNQQVIGELVGKMESASGDLRFEEAARYRDQILALRRVTEQQSVSGNVLDELD 258

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----DKPC 299
              +   +  ACI   F   G+  G+ ++F K  +++   +++  FL QFY      +  
Sbjct: 259 VVGVAFQQGAACIHVLFIRQGKVLGSRSYFPKVPADTQLDEVVQSFLLQFYLSGQGGRQI 318

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  +LL    E+ S++  +  +  GYKV++    + E+ + I+ A INA  +   +L+ +
Sbjct: 319 PSEVLLDVALEDESVIAETLSQTAGYKVRVVSRTRAERARFIKLASINAETALRSRLAHK 378

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +         +   L     R+E +D SH MG   V   VV    G + ++YR+FN+  
Sbjct: 379 STITARYDQLEELLELERPIARMECFDISHTMGERTVASCVVFNREGPLSSEYRRFNI-- 436

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA- 478
           + +   DD A M   LERRF +  + ++                PDV+ +DGG GQL   
Sbjct: 437 DGITGGDDYAAMEQALERRFGKQQEPDK---------------VPDVLFIDGGLGQLRRA 481

Query: 479 --AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRD 535
                   +        ++ IAKG  R AG+E   + +  E L L    P L+ IQ +RD
Sbjct: 482 EEILARQLEFLGGKYPLLVGIAKGVTRKAGLETLIMGESHEELHLPADMPALHLIQHIRD 541

Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+HRFAIT HR RR KA   S L++I G+GP R++ LL+  G ++ + ++S + LA + G
Sbjct: 542 ESHRFAITGHRARRAKARTSSSLEDIPGVGPKRRQALLKYLGGLQEVKKASVDELAKVPG 601

Query: 595 ISKKIACKIYNHFH 608
           IS+++A  I++  H
Sbjct: 602 ISQELAQTIHDGLH 615


>gi|257093161|ref|YP_003166802.1| excinuclease ABC subunit C [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045685|gb|ACV34873.1| excinuclease ABC, C subunit [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 603

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 216/610 (35%), Positives = 322/610 (52%), Gaps = 25/610 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + E PGVY+MLD AG VLYVGKA NL+KR+ SY   N+ + RI  M++QI  +  TVT 
Sbjct: 13  TLTELPGVYRMLDRAGNVLYVGKAKNLRKRVASYFRENHASPRIALMVAQIARVETTVTR 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PYI+++     P L   R ++  +  YFGP
Sbjct: 73  SEAEALLLENNLIKSLSPRYNILFRDDKSYPYIVLS-HDSAPRLGFFRGATDKRADYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV  +I+ LQ+ F LR+C + VF +R+RPCLL QIKRCSGPC G I  E+Y E V
Sbjct: 132 FPSSSAVRDSIHLLQKMFRLRTCENPVFNNRSRPCLLHQIKRCSGPCVGLIEPERYAEDV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A  FL G   ++  +++  M++A  K  +E A ++RD++ +L  +Q            
Sbjct: 192 QMAVMFLQGRQQDVIGRLSTAMDEAAEKLAFEQAAVYRDQIQSLRQVQEKQYVESGTDAD 251

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +      L C+       G++ G    F    ++S+  + L+ FL Q Y   P P 
Sbjct: 252 VDIVAAVDGDGLICVNLAMVRGGRHLGDRPQFPANTADSSPHEALAAFLYQHYLAHPIPA 311

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            IL++    +  +      +  G  +++   +   +R  +E A  +A  + T +      
Sbjct: 312 RILVNLPLADGEV-AGWLSEMAGRPIRLGEARLTTQRVWVEMAEQSARLAITTRRVALSR 370

Query: 362 HQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
            +  L+       L      RIE +D SH  G + V   VV    G  K++YR+FN+   
Sbjct: 371 QEARLESLCSTLGLEAEEGMRIECFDISHTQGDATVAACVVYQGGGMRKSEYRRFNIRD- 429

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            V+  DD A MR  ++RR+ +L+                    P ++++DGG GQ+  A 
Sbjct: 430 -VQPGDDYAAMRQAVQRRYEKLV--------------SGSGVAPALILIDGGSGQVKVAA 474

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHR 539
             L  L   +++ ++ +AKG  R  G+E        E L L    P L+ IQ +RDEAHR
Sbjct: 475 AALADL-GLSQLPLLGVAKGEARKPGLETLVFADAREPLQLTPEHPALHLIQEIRDEAHR 533

Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA+T HR  R K    S L+ I GIGP R++ L+  FG ++ IS +  + L ++ GIS++
Sbjct: 534 FAVTGHRASRGKTGRTSRLEGIVGIGPKRRKALIARFGGLQGISDAGVDQLTAVPGISRE 593

Query: 599 IACKIYNHFH 608
           +A KIY   H
Sbjct: 594 LAEKIYASLH 603


>gi|296170712|ref|ZP_06852287.1| excision endonuclease subunit UvrC [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894701|gb|EFG74435.1| excision endonuclease subunit UvrC [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 650

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 190/637 (29%), Positives = 303/637 (47%), Gaps = 35/637 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY         R   M++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDTYGRVIYVGKAKSLRSRLTSYFADVAGLHPRTRQMVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  TTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCSAPCVGRVSAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG       ++ + MN A  + D+E A   RD L AL         +  
Sbjct: 193 RQIVDDFCDFLSGKTDRFARELEQRMNAAAEQLDFERAARLRDDLGALKRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTF---FLKTDSESTNAQILSYFLRQFY 294
                D  +   ++  A +Q      G+ RG   +         +S   Q++  FL QFY
Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKPGDPGDSGEEQLVEQFLTQFY 312

Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
            +             P P  +L+      +  L        G KV + VP++G+KR + E
Sbjct: 313 GEQAELGGAADESVNPVPREVLVPCLPSNSEELTSWLSALRGSKVALRVPRRGDKRALAE 372

Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398
               NA  +  Q               L++  +   L   P RIE  D SH+ G   VG 
Sbjct: 373 TVQRNAKEALQQHKLRRAGDFNARSAALQNIQEALGLADAPLRIECVDISHVQGTDVVGS 432

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQ 456
           +VV  +    K+ YR F +     + + DD A +  V  RRF++ +  + + N    + +
Sbjct: 433 LVVFEDGLPRKSDYRHFGIREAAGQGRSDDVASIAEVTRRRFARHLSEQSDPNMLSAEGK 492

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
              F   P++ ++DGG  Q++AA  VL+ L + + + +I +AK  +     E +   + +
Sbjct: 493 SRRFAYPPNLYVVDGGAPQVNAASAVLEDLGISD-VAVIGLAKRLE-----EIWVPSEPD 546

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575
            +++      LY +QR+RDEAHRFAIT HR +R K    S LD + G+G  R++ L+  F
Sbjct: 547 PVIMPRNSEGLYLLQRIRDEAHRFAITYHRSKRSKRMTASALDSVPGLGEHRRKALVTHF 606

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           G++  +  ++ + + ++ GI    A  +       +S
Sbjct: 607 GSIARLKEATVDQITAVPGIGVATATAVLEALRPESS 643


>gi|300311266|ref|YP_003775358.1| excinuclease ABC subunit C [Herbaspirillum seropedicae SmR1]
 gi|300074051|gb|ADJ63450.1| excinuclease ABC subunit C (SOS response DNA repair protein)
           protein [Herbaspirillum seropedicae SmR1]
          Length = 621

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 219/619 (35%), Positives = 329/619 (53%), Gaps = 34/619 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  M+ +I  +  TVT 
Sbjct: 22  RLPHLPGVYRYFDAEDNVLYVGKARDLKKRVSSYFQKTLTSPRIAMMVERIARLETTVTR 81

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L+PRFNIL RDDKS+PY+ IT  H  P +  +R +   +  YFGP
Sbjct: 82  SEAEALLLENNLIKTLRPRFNILFRDDKSYPYLKIT-GHAFPRMAYYRGAVDKRNQYFGP 140

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +  AV+++I  LQ+ F LR+C D+VF +RTRPCLL QI RCSGPC   +S E Y   V
Sbjct: 141 FPNAGAVKESIQILQKVFLLRTCEDTVFSNRTRPCLLHQIHRCSGPCVNLVSREDYAIDV 200

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS---HIQNHNDSIYNR 241
             A KFL G    + E + + M+       +E A   RD++ +LS   H Q+        
Sbjct: 201 ENASKFLRGRQSEVMEALEQKMHAFAADLKFEQAAAVRDQIGSLSSVLHQQSMETVSDAD 260

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-------DSESTNAQILSYFLRQFY 294
           +D  ++      AC+       G++ G   +F            +S + ++L  FL Q Y
Sbjct: 261 IDIIAVVVQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAMDTAEDSIDVEVLKAFLAQHY 320

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            DK  P ++++  E ++ +L+     +Q G+++ +T   QG++R+ +E A   A  +  +
Sbjct: 321 IDKFIPGSLIVGTEFDDPALMMALM-EQCGHRITLTFQPQGQRRQWLEMAAKGAEIALAR 379

Query: 355 KLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
            LS + S Q   +       L        R E +D SH  G +     VV   +     +
Sbjct: 380 LLSEQGSQQARTRALADVLELERDDLDELRAECFDISHTQGEATQASCVVFHHHAMQNGE 439

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++N++   +   DD A MR VL RR+ ++   E                 PD+V++DG
Sbjct: 440 YRRYNIND--ITPGDDYAAMRQVLTRRYEKVANGE--------------GVMPDIVLIDG 483

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFI 530
           GKGQ+  A+ VL +L ++  + I+ +AKG  R  G+E      G     L      L  I
Sbjct: 484 GKGQVETARQVLTELGLDISL-IVGVAKGEGRKVGLETLVFADGRAPKELGKESAALMLI 542

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            ++RDEAHRFAIT  R +R KA  S  L+EI GIG  R++ LL  FG ++ ++ +S + L
Sbjct: 543 AQIRDEAHRFAITGMRAKRAKARQSSRLEEIEGIGAKRRQRLLVRFGGLRGVADASVDDL 602

Query: 590 ASIEGISKKIACKIYNHFH 608
           AS+EGIS+++A +IY   H
Sbjct: 603 ASVEGISRQLAEEIYRQLH 621


>gi|71276086|ref|ZP_00652367.1| Excinuclease ABC, C subunit [Xylella fastidiosa Dixon]
 gi|71901641|ref|ZP_00683719.1| Excinuclease ABC, C subunit [Xylella fastidiosa Ann-1]
 gi|71163169|gb|EAO12890.1| Excinuclease ABC, C subunit [Xylella fastidiosa Dixon]
 gi|71728585|gb|EAO30738.1| Excinuclease ABC, C subunit [Xylella fastidiosa Ann-1]
          Length = 627

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 226/607 (37%), Positives = 338/607 (55%), Gaps = 19/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M++Q+  +  T+T 
Sbjct: 23  HLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITR 82

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EALLLE  +IK L PR+N+LLRDDKS+PY+L+T     P +  HR    + G YFGP
Sbjct: 83  NEAEALLLENQLIKSLAPRYNVLLRDDKSYPYVLLT-SEAWPRIALHRGPQIVPGRYFGP 141

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V AV   +N + + F LRSC DSVFR+R+RPCL +QI RCS PC   ++ + Y E V
Sbjct: 142 YPGVTAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAV 201

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
           H    FL G +  L E++ + M  A+   ++E A   RD L +L  +QN          +
Sbjct: 202 HRVTLFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADL 261

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +       AC+    F  G+N GT  FF KT+ E   A+ILS F+ Q+Y + P P  
Sbjct: 262 DVLACAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPE 321

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL +E  + +LLE +F +   +K+ +    +GE+   +E A+ NA  + + +L+++ + 
Sbjct: 322 ILLDQEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQ 381

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           ++  +   +   L    KR+E +D SH MG + V   VV    G V++QYR++N+    +
Sbjct: 382 RVRSEAVRQLLGLEGPVKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGI 439

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++ ++                PDV+ +DGG GQL+ A+  
Sbjct: 440 TPGDDYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMA 487

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  + VE  + ++ ++KG +R AG E   +  G+ L      P L FIQ++RDEAHRFAI
Sbjct: 488 LNAVGVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGSASPALQFIQQVRDEAHRFAI 546

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+K    S L++I GIG  R+  LL+ FG +  +  +    +A +EGIS  +A 
Sbjct: 547 TGHRARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAA 606

Query: 602 KIYNHFH 608
           KIY   H
Sbjct: 607 KIYASLH 613


>gi|237731959|ref|ZP_04562440.1| excinuclease ABC subunit C [Citrobacter sp. 30_2]
 gi|226907498|gb|EEH93416.1| excinuclease ABC subunit C [Citrobacter sp. 30_2]
          Length = 610

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAVALTTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALASVLKLPAVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V  +L+V   +    ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LGQAKAVFAELDVPWDKQHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI+ HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASIEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KI+    
Sbjct: 592 KVPGISQALAEKIFYSLK 609


>gi|170769376|ref|ZP_02903829.1| excinuclease ABC, C subunit [Escherichia albertii TW07627]
 gi|170121700|gb|EDS90631.1| excinuclease ABC, C subunit [Escherichia albertii TW07627]
          Length = 610

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 209/614 (34%), Positives = 333/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +  ++Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVGEDEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVITQLISRMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +     +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFEAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFHLSDKTLLADSLSELAGRRINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPAVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +    ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKKHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQALAEKIF 605


>gi|331683464|ref|ZP_08384065.1| excinuclease ABC subunit C [Escherichia coli H299]
 gi|331079679|gb|EGI50876.1| excinuclease ABC subunit C [Escherichia coli H299]
          Length = 610

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I   +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|261344059|ref|ZP_05971704.1| excinuclease ABC subunit C [Providencia rustigianii DSM 4541]
 gi|282568451|gb|EFB73986.1| excinuclease ABC subunit C [Providencia rustigianii DSM 4541]
          Length = 610

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/619 (34%), Positives = 337/619 (54%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY   N  + +   ++  I +I  TV
Sbjct: 11  LKTVTNQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRENVSSRKTEQLVKHIASIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++ K   P +  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-KETHPRISLHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF S  AV +T+  +Q+ F +R C DSV+++R+RPCL +QI RC GPC    ++ E+Y 
Sbjct: 130 GPFPSSYAVRETLALMQKLFPIRQCEDSVYKNRSRPCLQYQIGRCLGPCVQGLVTDEEYD 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
           + V+  + FL+G +  +   +   M +A+ +  +E A   RD++ A+  +         +
Sbjct: 190 QQVNYVRLFLTGKDKQVLTGLVDRMEKASQELRFEDAARFRDQIQAVRAVTEEQYVSGDH 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
           + +D   +     LAC+   F   G+  G+ +++ K  S +   +++  FL QFY     
Sbjct: 250 DDLDVIGVAFESGLACVHVLFIRQGKVLGSRSYYPKIPSGTLLDEVVQTFLGQFYLQGSE 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           ++  P  IL+     E  LL  S  +  G K+ I    +G + + ++ A  NA  + + K
Sbjct: 310 NRTLPGEILIDFPLTEKVLLADSLSELAGRKINIQSQPRGTRARYLKLARTNASIALSTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+ + + Q  +   +K   + +I  R+E +D SH MG   V   VV  + G VK++YR++
Sbjct: 370 LAQQSTIQQRMAALSKVVNIENIS-RMECFDISHTMGEQTVASCVVFDKTGPVKSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I   +                PD++ +DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMHQVLTRRYGKHIDESK---------------IPDIIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V   L+V+   N   +I +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LGQAKDVFDSLDVDWDKNHPLLIGVAKGSDRKAGLETLFLKPEGEGFALPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHNHAITGHRQRRAKVKNTSALESIEGVGPKRRQMLLKYMGGLQPLRNASIEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            +  IS  +A KIYN   +
Sbjct: 592 KVPSISYALAEKIYNALKQ 610


>gi|238020185|ref|ZP_04600611.1| hypothetical protein GCWU000324_00060 [Kingella oralis ATCC 51147]
 gi|237868579|gb|EEP69583.1| hypothetical protein GCWU000324_00060 [Kingella oralis ATCC 51147]
          Length = 619

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 216/620 (34%), Positives = 333/620 (53%), Gaps = 28/620 (4%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P   GVY+M+   G VLYVGKA NL++R+ SY   N+H+ RI  M+ Q+  I  
Sbjct: 15  IFLKSLPNSAGVYRMIAADGTVLYVGKAVNLKRRVSSYFQKNDHSLRIRLMLQQVARIEI 74

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+T +E EAL+LE N+IK L P++NIL RDDKS+PY++I+  H  P L  +R S      
Sbjct: 75  TLTQSEAEALILENNLIKSLSPKYNILFRDDKSYPYLMIS-GHAYPQLAYYRGSLKKPNQ 133

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ +  AV  +I  LQ+ F LR+C DSVF HR RPCLL QIKRCS PC G +S+E+Y
Sbjct: 134 YFGPYPNGYAVRDSIEILQKVFQLRTCEDSVFAHRDRPCLLAQIKRCSAPCVGAVSAEEY 193

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V  A  FL+G   +L   +   M+ A  + D+E A   RD++ AL+ +Q+       
Sbjct: 194 AEQVRRATAFLNGRTADLTRDLEAAMHAAAEQLDFERAAQLRDQIQALAVMQSKQFIDSQ 253

Query: 241 RM-------DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--NAQILSYFLR 291
                    D  ++   +   C+       G++ G  +FF  T  + +         F+ 
Sbjct: 254 NQHSKQQDIDIIAIAQAQGSICVHWVSIRGGRHVGDRSFFPDTRQDPSPNPQDYAEAFVA 313

Query: 292 QFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
           Q Y  KP P+  + +        L+ +   ++  ++  T  ++GE++  +  A+ NA  +
Sbjct: 314 QHYLGKPKPDVFITNFRLP--ESLQTALNSEHPRQIVFTQGERGERKVWLNMAVRNAEHA 371

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
            +Q      + Q  +    +   LP    +R+E +D SH  G + +   VV  +     +
Sbjct: 372 LSQHQLQNSNQQERIAALAEIIGLPENELQRLECFDISHTQGEATLASCVVYDQYAMQPS 431

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           QYR++N+     K  DD A MR VL RR+ ++ +  EN              +PD V++D
Sbjct: 432 QYRRYNITTA--KAGDDYAAMREVLTRRYGKMQQARENGES---------VRFPDAVLID 480

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYF 529
           GGKGQ+  A  V  +L +   I ++ IAKG +R AG+E+  +  +     L    P L+ 
Sbjct: 481 GGKGQVRMATEVWAELGLH--IPLVGIAKGVERKAGLEELILPFQNRQFRLPPNSPALHL 538

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q +RDE+HRFAIT  R +R K+   S L++I+GIG  RK  LL  FG ++ +  +S + 
Sbjct: 539 LQTVRDESHRFAITGMRAKRDKSRVTSSLNDIDGIGAKRKAALLTRFGGLRGVQAASIDD 598

Query: 589 LASIEGISKKIACKIYNHFH 608
           LA  +GIS+ +A KIY +FH
Sbjct: 599 LAQTDGISRALAEKIYGYFH 618


>gi|323174573|gb|EFZ60194.1| excinuclease ABC, C subunit [Escherichia coli LT-68]
          Length = 610

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL R + + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRSYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|332968331|gb|EGK07402.1| excinuclease ABC subunit C [Kingella kingae ATCC 23330]
          Length = 653

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 216/619 (34%), Positives = 333/619 (53%), Gaps = 28/619 (4%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P   GVY+M+     VLYVGKA NL++R+ SY   ++H+ RI  MI QI  +  
Sbjct: 51  IFLKSLPNSSGVYRMIAADDSVLYVGKAVNLKRRVSSYFQKSDHSPRIQLMIKQIARVEI 110

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+T +E EAL+LE N+IK L P++NIL RDDKS+PY++I+  H+ P L   R +      
Sbjct: 111 TLTRSEAEALILENNLIKSLLPKYNILFRDDKSYPYLMIS-GHEFPKLAYFRGTPKKPNQ 169

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ +  AV  +I  LQ+ F LR+C DSVF HR RPCLL QIKRCS PC G +S + Y
Sbjct: 170 YFGPYPNGYAVRDSIEILQKVFQLRTCEDSVFSHRDRPCLLAQIKRCSAPCVGSVSRDDY 229

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V  A  FL+G   +L + + + M QA    D+E+A   RD++ ALS IQ+       
Sbjct: 230 AEQVRNAAAFLNGKTADLLKDLEKQMFQAADDLDFETAAKLRDQIQALSVIQSKQFIDSQ 289

Query: 241 ------RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQ 292
                  +D  +L       C+       G++ G  +FF  T  +           F+ Q
Sbjct: 290 SVGNQADIDIVALAQANGGVCLHWVSIRGGRHVGDKSFFPDTRHDPNPNGQDYAEAFVAQ 349

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
            Y  K  P+ ++ +        L+ +   ++   ++    ++GE++  +  A+ NA  + 
Sbjct: 350 HYLGKMKPDVLICNFRLP--ESLQAALNSEHSRAIQFPKAEKGERKVWLNMAIQNAEHAL 407

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
           +Q     ++ Q  +    +   LP    +R+E +D SH  G + +   VV  +     +Q
Sbjct: 408 SQHQLQNVNQQARVAALAEIVGLPESDLQRLECFDISHTQGEATMASCVVYDDFAMQPSQ 467

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++N++     T DD A MR VL RR+ ++ + + N              +PD V++DG
Sbjct: 468 YRRYNINS---VTNDDYAAMREVLTRRYGKMKEAQANGET---------VRFPDAVLIDG 515

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFI 530
           G GQ+  A  V ++L +   I ++ IAKG +R AG+E+  +   GE   L    P L+ +
Sbjct: 516 GMGQIGVAVAVWEELGLT--IPLVGIAKGVERKAGLEELILPFSGERFRLPPNSPALHLL 573

Query: 531 QRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           Q +RDE+HRFAIT  R +R KA   S L++I+G+G  RK  LL  FG ++ +  +S + L
Sbjct: 574 QTVRDESHRFAITGMRAKRDKARVTSSLNDIDGVGAKRKAALLMRFGGLRGVQAASVDDL 633

Query: 590 ASIEGISKKIACKIYNHFH 608
           A  EGIS+ +A KIY +FH
Sbjct: 634 AQTEGISRALAEKIYGYFH 652


>gi|182681939|ref|YP_001830099.1| excinuclease ABC subunit C [Xylella fastidiosa M23]
 gi|229557877|sp|B2I637|UVRC_XYLF2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|182632049|gb|ACB92825.1| excinuclease ABC, C subunit [Xylella fastidiosa M23]
 gi|307578199|gb|ADN62168.1| excinuclease ABC subunit C [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 621

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 226/607 (37%), Positives = 339/607 (55%), Gaps = 19/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M++Q+  +  T+T 
Sbjct: 17  HLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EALLLE  +IK L PR+N+LLRDDKS+PY+L+T +   P +  HR    + G YFGP
Sbjct: 77  NEAEALLLENQLIKSLTPRYNVLLRDDKSYPYVLLT-REAWPRIALHRGPQIVPGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V AV   +N + + F LRSC DSVFR+R+RPCL +QI RCS PC   ++ + Y E V
Sbjct: 136 YPGVTAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
           H    FL G +  L E++ + M  A+   ++E A   RD L +L  +QN          +
Sbjct: 196 HRVTLFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +       AC+    F  G+N GT  FF KT+ E   A+ILS F+ Q+Y + P P  
Sbjct: 256 DVLACAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL +E  + +LLE +F +   +K+ +    +GE+   +E A+ NA  + + +L+++ + 
Sbjct: 316 ILLDQEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           ++  +   +   L    KR+E +D SH MG + V   VV    G V++QYR++N+    +
Sbjct: 376 RVRSEAVRQLLGLEGPIKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++ ++                PDV+ +DGG GQL+ A+  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMA 481

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  + VE  + ++ ++KG +R AG E   +  G+ L      P L FIQ++RDEAHRFAI
Sbjct: 482 LNAVGVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGAASPALQFIQQVRDEAHRFAI 540

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+K    S L++I GIG  R+  LL+ FG +  +  +    +A +EGIS  +A 
Sbjct: 541 TGHRARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAA 600

Query: 602 KIYNHFH 608
           KIY   H
Sbjct: 601 KIYASLH 607


>gi|283832687|ref|ZP_06352428.1| excinuclease ABC subunit C [Citrobacter youngae ATCC 29220]
 gi|291072363|gb|EFE10472.1| excinuclease ABC subunit C [Citrobacter youngae ATCC 29220]
          Length = 610

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/618 (34%), Positives = 335/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAAVALTTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTIAQRLTALASVLKLPAVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V  +L+V   +    ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LGQAKAVFAELDVTWDKQHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKSTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASIEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KI+    
Sbjct: 592 KVPGISQALAEKIFYSLK 609


>gi|91211132|ref|YP_541118.1| excinuclease ABC subunit C [Escherichia coli UTI89]
 gi|237705868|ref|ZP_04536349.1| excinuclease ABC subunit C [Escherichia sp. 3_2_53FAA]
 gi|300935887|ref|ZP_07150844.1| excinuclease ABC subunit C [Escherichia coli MS 21-1]
 gi|119367648|sp|Q1RAM7|UVRC_ECOUT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91072706|gb|ABE07587.1| excinuclease ABC subunit C [Escherichia coli UTI89]
 gi|226900625|gb|EEH86884.1| excinuclease ABC subunit C [Escherichia sp. 3_2_53FAA]
 gi|294490470|gb|ADE89226.1| excinuclease ABC, C subunit [Escherichia coli IHE3034]
 gi|300458937|gb|EFK22430.1| excinuclease ABC subunit C [Escherichia coli MS 21-1]
 gi|307626610|gb|ADN70914.1| excinuclease ABC subunit C [Escherichia coli UM146]
 gi|315286614|gb|EFU46047.1| excinuclease ABC subunit C [Escherichia coli MS 110-3]
 gi|323956310|gb|EGB52053.1| excinuclease ABC [Escherichia coli H263]
          Length = 610

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGIGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|170730446|ref|YP_001775879.1| excinuclease ABC subunit C [Xylella fastidiosa M12]
 gi|167965239|gb|ACA12249.1| excinuclease ABC subunit C [Xylella fastidiosa M12]
          Length = 627

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 226/607 (37%), Positives = 339/607 (55%), Gaps = 19/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M++Q+  +  T+T 
Sbjct: 23  HLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITR 82

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EALLLE  +IK L PR+N+LLRDDKS+PY+L+T +   P +  HR    + G YFGP
Sbjct: 83  NEAEALLLENQLIKSLAPRYNVLLRDDKSYPYVLLT-REAWPRIALHRGPQIVPGRYFGP 141

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V AV   +N + + F LRSC DSVFR+R+RPCL +QI RCS PC   ++ + Y E V
Sbjct: 142 YPGVTAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAV 201

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
           H    FL G +  L E++ + M  A+   ++E A   RD L +L  +QN          +
Sbjct: 202 HRVTLFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADL 261

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +       AC+    F  G+N GT  FF KT+ E   A+ILS F+ Q+Y + P P  
Sbjct: 262 DVLACAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPE 321

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL +E  + +LLE +F +   +K+ +    +GE+   +E A+ NA  + + +L+++ + 
Sbjct: 322 ILLDQEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQ 381

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           ++  +   +   L    KR+E +D SH MG + V   VV    G V++QYR++N+    +
Sbjct: 382 RVRSEAVRQLLGLEGPVKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGI 439

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++ ++                PDV+ +DGG GQL+ A+  
Sbjct: 440 TPGDDYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMA 487

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  + VE  + ++ ++KG +R AG E   +  G+ L      P L FIQ++RDEAHRFAI
Sbjct: 488 LNAVGVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGAASPALQFIQQVRDEAHRFAI 546

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+K    S L++I GIG  R+  LL+ FG +  +  +    +A +EGIS  +A 
Sbjct: 547 TGHRARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAA 606

Query: 602 KIYNHFH 608
           KIY   H
Sbjct: 607 KIYASLH 613


>gi|325267203|ref|ZP_08133869.1| excinuclease ABC subunit C [Kingella denitrificans ATCC 33394]
 gi|324981336|gb|EGC16982.1| excinuclease ABC subunit C [Kingella denitrificans ATCC 33394]
          Length = 615

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 215/619 (34%), Positives = 326/619 (52%), Gaps = 27/619 (4%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P   GVY+M+     VLYVGKA NL++RI SY    +H+ RI  MI QI  +  
Sbjct: 12  IFLKSLPNAAGVYRMIAADDSVLYVGKAVNLKRRISSYFQKTDHSPRIKLMIKQIARVEI 71

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+T  E EAL+LE N+IK L P++NIL RDDKS+PY++I+  H+ P L   R +      
Sbjct: 72  TLTRNEAEALILENNLIKSLSPKYNILFRDDKSYPYLMIS-GHEFPQLAYFRGTPKKPNQ 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ +  AV  +I  LQ+ F LR+C DSVF HR RPCLL QI RCS PC G +S E+Y
Sbjct: 131 YFGPYPNGYAVRDSIEILQKVFRLRTCEDSVFAHRDRPCLLAQINRCSAPCMGAVSPEEY 190

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            E V  A  FL+G   +L + + + M QA    D+E+A   RD++ AL  +Q+       
Sbjct: 191 GEQVRHAVAFLNGKTAHLMKDLEQKMLQAAETLDFEAAAKWRDQIQALGTMQSKQFIDSK 250

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK--TDSESTNAQILSYFLRQ 292
                  +D  ++       C+       G++ G  +FF     D E         F+ Q
Sbjct: 251 NLNQPQDIDIVAVAEAGGSVCLHWVSIRGGRHVGDKSFFPDTRYDPEPNAQDYAEAFVAQ 310

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
            Y  KP P+ +L +        L+ +   ++   ++    ++GE++  +  A+ NA  + 
Sbjct: 311 HYLGKPKPDILLSNFTLP--EALQAALNSEHPRAMQFPKAEKGERKVWLNMAVKNAEHAL 368

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
            Q           ++   +   LP    +R+E +D SH  G + +   VV  +     +Q
Sbjct: 369 AQHQLQNSRQTERVEQLAELIGLPANELRRLECFDISHTQGEATIASCVVYDDFAMQPSQ 428

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++N++    K  DD A MR VL RR+ ++ +            +      PD V++DG
Sbjct: 429 YRRYNINTA--KAGDDYAAMREVLTRRYGKMAR---------AAADGEPVRLPDAVLIDG 477

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFI 530
           G GQ+  A  V ++L     I ++ IAKG +R AG+E+  +  K E   +    P L+ +
Sbjct: 478 GMGQIGVAVSVWEELGWT--IPLVGIAKGVERKAGLEELILPFKNERFRVPPNTPALHLL 535

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           Q +RDE+HRFAIT  R +R KA   S L++I G+G  RK  LL  FG ++ +  +S E L
Sbjct: 536 QTIRDESHRFAITGMRAKRDKARITSSLNDIAGVGAKRKAALLMRFGGLRGVQAASVEDL 595

Query: 590 ASIEGISKKIACKIYNHFH 608
           A +EGIS+ +A KIY++FH
Sbjct: 596 AQVEGISRALAEKIYDYFH 614


>gi|26248178|ref|NP_754218.1| excinuclease ABC subunit C [Escherichia coli CFT073]
 gi|38704033|ref|NP_310678.2| excinuclease ABC subunit C [Escherichia coli O157:H7 str. Sakai]
 gi|89108748|ref|AP_002528.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K-12 substr. W3110]
 gi|90111354|ref|NP_416423.4| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|157155145|ref|YP_001463216.1| excinuclease ABC subunit C [Escherichia coli E24377A]
 gi|157161384|ref|YP_001458702.1| excinuclease ABC subunit C [Escherichia coli HS]
 gi|161367590|ref|NP_288374.2| excinuclease ABC subunit C [Escherichia coli O157:H7 EDL933]
 gi|161986542|ref|YP_310160.2| excinuclease ABC subunit C [Shigella sonnei Ss046]
 gi|168790333|ref|ZP_02815340.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC869]
 gi|168802973|ref|ZP_02827980.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC508]
 gi|170081561|ref|YP_001730881.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188495148|ref|ZP_03002418.1| excinuclease ABC, C subunit [Escherichia coli 53638]
 gi|191173286|ref|ZP_03034816.1| excinuclease ABC, C subunit [Escherichia coli F11]
 gi|193071134|ref|ZP_03052058.1| excinuclease ABC, C subunit [Escherichia coli E110019]
 gi|194439599|ref|ZP_03071672.1| excinuclease ABC, C subunit [Escherichia coli 101-1]
 gi|208816990|ref|ZP_03258110.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4045]
 gi|209400940|ref|YP_002271025.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209919334|ref|YP_002293418.1| excinuclease ABC subunit C [Escherichia coli SE11]
 gi|215487118|ref|YP_002329549.1| excinuclease ABC subunit C [Escherichia coli O127:H6 str. E2348/69]
 gi|217328731|ref|ZP_03444812.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218554496|ref|YP_002387409.1| excinuclease ABC subunit C [Escherichia coli IAI1]
 gi|218689906|ref|YP_002398118.1| excinuclease ABC subunit C [Escherichia coli ED1a]
 gi|218695519|ref|YP_002403186.1| excinuclease ABC subunit C [Escherichia coli 55989]
 gi|218699523|ref|YP_002407152.1| excinuclease ABC subunit C [Escherichia coli IAI39]
 gi|218705408|ref|YP_002412927.1| excinuclease ABC subunit C [Escherichia coli UMN026]
 gi|227885661|ref|ZP_04003466.1| excinuclease ABC subunit C [Escherichia coli 83972]
 gi|238901122|ref|YP_002926918.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli BW2952]
 gi|253773135|ref|YP_003035966.1| excinuclease ABC subunit C [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254793563|ref|YP_003078400.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. TW14359]
 gi|256017890|ref|ZP_05431755.1| excinuclease ABC subunit C [Shigella sp. D9]
 gi|256022429|ref|ZP_05436294.1| excinuclease ABC subunit C [Escherichia sp. 4_1_40B]
 gi|261227593|ref|ZP_05941874.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255823|ref|ZP_05948356.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283090|ref|YP_003499908.1| UvrABC system protein C [Escherichia coli O55:H7 str. CB9615]
 gi|293405399|ref|ZP_06649391.1| UvrABC system protein C [Escherichia coli FVEC1412]
 gi|293410272|ref|ZP_06653848.1| excinuclease ABC [Escherichia coli B354]
 gi|293415222|ref|ZP_06657865.1| excinuclease ABC [Escherichia coli B185]
 gi|293446295|ref|ZP_06662717.1| excinuclease ABC [Escherichia coli B088]
 gi|298381043|ref|ZP_06990642.1| UvrABC system protein C [Escherichia coli FVEC1302]
 gi|300822316|ref|ZP_07102457.1| excinuclease ABC subunit C [Escherichia coli MS 119-7]
 gi|300899165|ref|ZP_07117444.1| excinuclease ABC subunit C [Escherichia coli MS 198-1]
 gi|300904798|ref|ZP_07122626.1| excinuclease ABC subunit C [Escherichia coli MS 84-1]
 gi|300917354|ref|ZP_07134023.1| excinuclease ABC subunit C [Escherichia coli MS 115-1]
 gi|300925004|ref|ZP_07140928.1| excinuclease ABC subunit C [Escherichia coli MS 182-1]
 gi|300951536|ref|ZP_07165370.1| excinuclease ABC subunit C [Escherichia coli MS 116-1]
 gi|300956573|ref|ZP_07168853.1| excinuclease ABC subunit C [Escherichia coli MS 175-1]
 gi|300982240|ref|ZP_07175952.1| excinuclease ABC subunit C [Escherichia coli MS 200-1]
 gi|300993977|ref|ZP_07180624.1| excinuclease ABC subunit C [Escherichia coli MS 45-1]
 gi|301018238|ref|ZP_07182753.1| excinuclease ABC subunit C [Escherichia coli MS 69-1]
 gi|301050734|ref|ZP_07197592.1| excinuclease ABC subunit C [Escherichia coli MS 185-1]
 gi|301305253|ref|ZP_07211350.1| excinuclease ABC subunit C [Escherichia coli MS 124-1]
 gi|301327702|ref|ZP_07220908.1| excinuclease ABC subunit C [Escherichia coli MS 78-1]
 gi|301645570|ref|ZP_07245499.1| excinuclease ABC subunit C [Escherichia coli MS 146-1]
 gi|306814263|ref|ZP_07448429.1| excinuclease ABC subunit C [Escherichia coli NC101]
 gi|307138579|ref|ZP_07497935.1| excinuclease ABC subunit C [Escherichia coli H736]
 gi|307314181|ref|ZP_07593791.1| excinuclease ABC, C subunit [Escherichia coli W]
 gi|309795978|ref|ZP_07690391.1| excinuclease ABC subunit C [Escherichia coli MS 145-7]
 gi|312967114|ref|ZP_07781332.1| excinuclease ABC, C subunit [Escherichia coli 2362-75]
 gi|312973877|ref|ZP_07788049.1| excinuclease ABC, C subunit [Escherichia coli 1827-70]
 gi|331642534|ref|ZP_08343669.1| excinuclease ABC subunit C [Escherichia coli H736]
 gi|331647505|ref|ZP_08348597.1| excinuclease ABC subunit C [Escherichia coli M605]
 gi|331653319|ref|ZP_08354324.1| excinuclease ABC subunit C [Escherichia coli M718]
 gi|331657958|ref|ZP_08358920.1| excinuclease ABC subunit C [Escherichia coli TA206]
 gi|331668606|ref|ZP_08369454.1| excinuclease ABC subunit C [Escherichia coli TA271]
 gi|331677797|ref|ZP_08378472.1| excinuclease ABC subunit C [Escherichia coli H591]
 gi|332278917|ref|ZP_08391330.1| excinuclease UvrABC [Shigella sp. D9]
 gi|67474772|sp|P0A8G0|UVRC_ECOLI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|67474775|sp|P0A8G1|UVRC_ECOL6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|67474776|sp|P0A8G2|UVRC_ECO57 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367838|sp|Q3Z2T7|UVRC_SHISS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038047|sp|A7ZN37|UVRC_ECO24 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038048|sp|A8A1B5|UVRC_ECOHS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226695577|sp|B7NS11|UVRC_ECO7I RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226695578|sp|B7M356|UVRC_ECO8A RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226695579|sp|B7NBQ8|UVRC_ECOLU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226698349|sp|B5YRT7|UVRC_ECO5E RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226698350|sp|B6I0W0|UVRC_ECOSE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229558027|sp|B1X671|UVRC_ECODH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764931|sp|B7UST2|UVRC_ECO27 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764932|sp|B7L8S5|UVRC_ECO55 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764933|sp|B7MWA0|UVRC_ECO81 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|259710338|sp|C4ZQJ1|UVRC_ECOBW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|26108582|gb|AAN80785.1|AE016762_38 Excinuclease ABC subunit C [Escherichia coli CFT073]
 gi|1736572|dbj|BAA15733.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K12 substr. W3110]
 gi|87081999|gb|AAC74980.2| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|157067064|gb|ABV06319.1| excinuclease ABC, C subunit [Escherichia coli HS]
 gi|157077175|gb|ABV16883.1| excinuclease ABC, C subunit [Escherichia coli E24377A]
 gi|169889396|gb|ACB03103.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188490347|gb|EDU65450.1| excinuclease ABC, C subunit [Escherichia coli 53638]
 gi|189370222|gb|EDU88638.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC869]
 gi|189375231|gb|EDU93647.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC508]
 gi|190906403|gb|EDV66012.1| excinuclease ABC, C subunit [Escherichia coli F11]
 gi|192955529|gb|EDV86008.1| excinuclease ABC, C subunit [Escherichia coli E110019]
 gi|194421508|gb|EDX37522.1| excinuclease ABC, C subunit [Escherichia coli 101-1]
 gi|208731333|gb|EDZ80022.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4045]
 gi|209162340|gb|ACI39773.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209912593|dbj|BAG77667.1| excinuclease ABC subunit C [Escherichia coli SE11]
 gi|215265190|emb|CAS09579.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O127:H6
           str. E2348/69]
 gi|217318078|gb|EEC26505.1| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218352251|emb|CAU98007.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli 55989]
 gi|218361264|emb|CAQ98848.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli IAI1]
 gi|218369509|emb|CAR17276.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli IAI39]
 gi|218427470|emb|CAR08366.2| excinuclease UvrABC, endonuclease subunit [Escherichia coli ED1a]
 gi|218432505|emb|CAR13398.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli UMN026]
 gi|222033654|emb|CAP76395.1| UvrABC system protein C [Escherichia coli LF82]
 gi|227837234|gb|EEJ47700.1| excinuclease ABC subunit C [Escherichia coli 83972]
 gi|238861047|gb|ACR63045.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli BW2952]
 gi|253324179|gb|ACT28781.1| excinuclease ABC, C subunit [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254592963|gb|ACT72324.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7
           str. TW14359]
 gi|284921826|emb|CBG34899.1| UvrABC system protein C [Escherichia coli 042]
 gi|290762963|gb|ADD56924.1| UvrABC system protein C [Escherichia coli O55:H7 str. CB9615]
 gi|291323125|gb|EFE62553.1| excinuclease ABC [Escherichia coli B088]
 gi|291427607|gb|EFF00634.1| UvrABC system protein C [Escherichia coli FVEC1412]
 gi|291432870|gb|EFF05849.1| excinuclease ABC [Escherichia coli B185]
 gi|291470740|gb|EFF13224.1| excinuclease ABC [Escherichia coli B354]
 gi|298278485|gb|EFI19999.1| UvrABC system protein C [Escherichia coli FVEC1302]
 gi|300297551|gb|EFJ53936.1| excinuclease ABC subunit C [Escherichia coli MS 185-1]
 gi|300307310|gb|EFJ61830.1| excinuclease ABC subunit C [Escherichia coli MS 200-1]
 gi|300316620|gb|EFJ66404.1| excinuclease ABC subunit C [Escherichia coli MS 175-1]
 gi|300357224|gb|EFJ73094.1| excinuclease ABC subunit C [Escherichia coli MS 198-1]
 gi|300399825|gb|EFJ83363.1| excinuclease ABC subunit C [Escherichia coli MS 69-1]
 gi|300403312|gb|EFJ86850.1| excinuclease ABC subunit C [Escherichia coli MS 84-1]
 gi|300406423|gb|EFJ89961.1| excinuclease ABC subunit C [Escherichia coli MS 45-1]
 gi|300415400|gb|EFJ98710.1| excinuclease ABC subunit C [Escherichia coli MS 115-1]
 gi|300418839|gb|EFK02150.1| excinuclease ABC subunit C [Escherichia coli MS 182-1]
 gi|300449211|gb|EFK12831.1| excinuclease ABC subunit C [Escherichia coli MS 116-1]
 gi|300525199|gb|EFK46268.1| excinuclease ABC subunit C [Escherichia coli MS 119-7]
 gi|300839459|gb|EFK67219.1| excinuclease ABC subunit C [Escherichia coli MS 124-1]
 gi|300845746|gb|EFK73506.1| excinuclease ABC subunit C [Escherichia coli MS 78-1]
 gi|301076102|gb|EFK90908.1| excinuclease ABC subunit C [Escherichia coli MS 146-1]
 gi|305852422|gb|EFM52873.1| excinuclease ABC subunit C [Escherichia coli NC101]
 gi|306906150|gb|EFN36668.1| excinuclease ABC, C subunit [Escherichia coli W]
 gi|307553926|gb|ADN46701.1| excinuclease ABC subunit C [Escherichia coli ABU 83972]
 gi|308120428|gb|EFO57690.1| excinuclease ABC subunit C [Escherichia coli MS 145-7]
 gi|309702208|emb|CBJ01524.1| UvrABC system protein C [Escherichia coli ETEC H10407]
 gi|310332472|gb|EFP99707.1| excinuclease ABC, C subunit [Escherichia coli 1827-70]
 gi|312288578|gb|EFR16480.1| excinuclease ABC, C subunit [Escherichia coli 2362-75]
 gi|312946505|gb|ADR27332.1| excinuclease ABC subunit C [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061213|gb|ADT75540.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli W]
 gi|315257257|gb|EFU37225.1| excinuclease ABC subunit C [Escherichia coli MS 85-1]
 gi|315296528|gb|EFU55825.1| excinuclease ABC subunit C [Escherichia coli MS 16-3]
 gi|315617865|gb|EFU98463.1| excinuclease ABC, C subunit [Escherichia coli 3431]
 gi|320176084|gb|EFW51152.1| Excinuclease ABC subunit C [Shigella dysenteriae CDC 74-1112]
 gi|320191886|gb|EFW66533.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. EC1212]
 gi|320194375|gb|EFW69006.1| Excinuclease ABC subunit C [Escherichia coli WV_060327]
 gi|320198606|gb|EFW73206.1| Excinuclease ABC subunit C [Escherichia coli EC4100B]
 gi|320641760|gb|EFX11148.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. G5101]
 gi|320647120|gb|EFX15953.1| excinuclease ABC subunit C [Escherichia coli O157:H- str. 493-89]
 gi|320652403|gb|EFX20701.1| excinuclease ABC subunit C [Escherichia coli O157:H- str. H 2687]
 gi|320658005|gb|EFX25767.1| excinuclease ABC subunit C [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658577|gb|EFX26271.1| excinuclease ABC subunit C [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668475|gb|EFX35302.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. LSU-61]
 gi|323378210|gb|ADX50478.1| excinuclease ABC, C subunit [Escherichia coli KO11]
 gi|323937188|gb|EGB33468.1| excinuclease ABC [Escherichia coli E1520]
 gi|323940424|gb|EGB36615.1| excinuclease ABC [Escherichia coli E482]
 gi|323961962|gb|EGB57561.1| excinuclease ABC [Escherichia coli H489]
 gi|323972724|gb|EGB67925.1| excinuclease ABC [Escherichia coli TA007]
 gi|323977907|gb|EGB72993.1| excinuclease ABC [Escherichia coli TW10509]
 gi|324007283|gb|EGB76502.1| excinuclease ABC subunit C [Escherichia coli MS 57-2]
 gi|324013556|gb|EGB82775.1| excinuclease ABC subunit C [Escherichia coli MS 60-1]
 gi|324017948|gb|EGB87167.1| excinuclease ABC subunit C [Escherichia coli MS 117-3]
 gi|324118967|gb|EGC12856.1| excinuclease ABC [Escherichia coli E1167]
 gi|326342319|gb|EGD66100.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. 1044]
 gi|326344826|gb|EGD68573.1| Excinuclease ABC subunit C [Escherichia coli O157:H7 str. 1125]
 gi|330911720|gb|EGH40230.1| excinuclease ABC subunit C [Escherichia coli AA86]
 gi|331039332|gb|EGI11552.1| excinuclease ABC subunit C [Escherichia coli H736]
 gi|331043229|gb|EGI15367.1| excinuclease ABC subunit C [Escherichia coli M605]
 gi|331049417|gb|EGI21489.1| excinuclease ABC subunit C [Escherichia coli M718]
 gi|331056206|gb|EGI28215.1| excinuclease ABC subunit C [Escherichia coli TA206]
 gi|331063800|gb|EGI35711.1| excinuclease ABC subunit C [Escherichia coli TA271]
 gi|331074257|gb|EGI45577.1| excinuclease ABC subunit C [Escherichia coli H591]
 gi|332101269|gb|EGJ04615.1| excinuclease UvrABC [Shigella sp. D9]
 gi|332343638|gb|AEE56972.1| excinuclease ABC, C subunit UvrC [Escherichia coli UMNK88]
          Length = 610

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|218548550|ref|YP_002382341.1| excinuclease ABC subunit C [Escherichia fergusonii ATCC 35469]
 gi|226732391|sp|B7LPF5|UVRC_ESCF3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|218356091|emb|CAQ88708.1| excinuclease UvrABC, endonuclease subunit [Escherichia fergusonii
           ATCC 35469]
          Length = 610

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 338/614 (55%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLTELAGRRINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTVHQRLSALATVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +NR  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKNRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPSDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|309790483|ref|ZP_07685043.1| excinuclease ABC, C subunit [Oscillochloris trichoides DG6]
 gi|308227470|gb|EFO81138.1| excinuclease ABC, C subunit [Oscillochloris trichoides DG6]
          Length = 625

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 209/617 (33%), Positives = 340/617 (55%), Gaps = 31/617 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64
           +PE PGVY      GR+LYVGK+  L+ R++SY       + +   ++  I +    VT 
Sbjct: 21  VPEAPGVYLWRGEDGRLLYVGKSKRLRDRMRSYFGSPKGMSGKNRRLVRLIADFEIIVTQ 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E+EALLLE N+IK+ +P +NILL+DDKS+P+I +T + + P ++  R+       YFGP
Sbjct: 81  SELEALLLEMNLIKQHRPPYNILLKDDKSYPFIKVTVQDEWPRIFSTRNVLDDGARYFGP 140

Query: 125 FASVDAVEKTINSLQRTFFL---RSCADSVF---RHRTRPCLLFQIKRCSGPCTGE-ISS 177
           +AS  +V KT++ L R F      +C+DS F   R + RPC  +QI+RC GPC  + ++ 
Sbjct: 141 YASAGSVYKTLDLLNRLFGFRPSYNCSDSWFNEHRRKGRPCTYYQIRRCLGPCVPDLVAP 200

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           + Y + +    +FL G +  +   + R M QA    ++E A   RDR+  +  I      
Sbjct: 201 DTYRQAIDSVCRFLDGKSDQVVRDLRRQMEQAAEDLNFERAAYLRDRIQDIEKIMERQQV 260

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
              +    D  +       A +Q  F   G+      F L+   + ++A +L+ FL QFY
Sbjct: 261 LRTVDTDQDVIAFAREDGSAVVQVLFVRGGKLINAEPFTLQGTEDESDADLLASFLTQFY 320

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
              P  P N+LL+E  EE  ++     ++ G++V+I VP++GEKR+++E A  NA +   
Sbjct: 321 ERAPNIPPNLLLAEHVEEPMIIASWLAQKSGHRVEIGVPRRGEKRQLVELAEQNARQKLQ 380

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
              TQ L++E      L +  +   L  +P+RIE YD S+  G   V  MVV        
Sbjct: 381 ELRTQWLNSEQRAVAALAELRELLDLAEMPQRIECYDISNTQGQQNVASMVVFERGEPKT 440

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           + YR+F +    V+  +D A +  V+ RRF +    E            ++   PD+V++
Sbjct: 441 SAYRRFKIKT--VEGANDVASIHEVISRRFKRATAEE----------SGTWADLPDLVLI 488

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQL+AA+  L +LN+E +I ++ +AKG  R+   +    ++ + +VL      L  
Sbjct: 489 DGGRGQLNAAREALGQLNLE-QIPVVGVAKGVDRNR-FDLVCAEREDLIVLPRDSKALGL 546

Query: 530 IQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +QR+ +EAHRFAIT HRK R KAA+ SPL+EI GIGP RK+ LL++FG++  I +++ + 
Sbjct: 547 VQRIDEEAHRFAITYHRKLRSKAAFASPLEEIPGIGPKRKKALLKAFGSLDGIRQATIDE 606

Query: 589 LASIEGISKKIACKIYN 605
           +A++ G++K+ A ++  
Sbjct: 607 IAAVPGMTKRAAEQLKA 623


>gi|170019749|ref|YP_001724703.1| excinuclease ABC subunit C [Escherichia coli ATCC 8739]
 gi|193066377|ref|ZP_03047425.1| excinuclease ABC, C subunit [Escherichia coli E22]
 gi|194429932|ref|ZP_03062442.1| excinuclease ABC, C subunit [Escherichia coli B171]
 gi|260844317|ref|YP_003222095.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O103:H2 str. 12009]
 gi|260855893|ref|YP_003229784.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O26:H11 str. 11368]
 gi|297518834|ref|ZP_06937220.1| excinuclease ABC subunit C [Escherichia coli OP50]
 gi|300928943|ref|ZP_07144447.1| excinuclease ABC subunit C [Escherichia coli MS 187-1]
 gi|189038050|sp|B1IZZ1|UVRC_ECOLC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|169754677|gb|ACA77376.1| excinuclease ABC, C subunit [Escherichia coli ATCC 8739]
 gi|192925962|gb|EDV80608.1| excinuclease ABC, C subunit [Escherichia coli E22]
 gi|194412021|gb|EDX28333.1| excinuclease ABC, C subunit [Escherichia coli B171]
 gi|195182997|dbj|BAG66563.1| endonuclease subunit of excinuclease UvrABC [Escherichia coli
           O111:H-]
 gi|257754542|dbj|BAI26044.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O26:H11 str. 11368]
 gi|257759464|dbj|BAI30961.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O103:H2 str. 12009]
 gi|300463097|gb|EFK26590.1| excinuclease ABC subunit C [Escherichia coli MS 187-1]
 gi|313848667|emb|CAQ32384.2| excinuclease ABC, subunit C; repair of UV damage to DNA, subunit of
           UvrABC Nucleotide Excision Repair Complex [Escherichia
           coli BL21(DE3)]
 gi|323152756|gb|EFZ39028.1| excinuclease ABC, C subunit [Escherichia coli EPECa14]
 gi|332089646|gb|EGI94748.1| excinuclease ABC, C subunit [Shigella boydii 5216-82]
          Length = 610

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGVDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|323968329|gb|EGB63736.1| excinuclease ABC [Escherichia coli M863]
 gi|327253042|gb|EGE64696.1| excinuclease ABC, C subunit [Escherichia coli STEC_7v]
          Length = 610

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLEAIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|161485798|ref|NP_707800.3| excinuclease ABC subunit C [Shigella flexneri 2a str. 301]
 gi|161486474|ref|NP_837528.2| excinuclease ABC subunit C [Shigella flexneri 2a str. 2457T]
 gi|161984952|ref|YP_407566.2| excinuclease ABC subunit C [Shigella boydii Sb227]
 gi|281601355|gb|ADA74339.1| UvrABC system protein C [Shigella flexneri 2002017]
 gi|313650130|gb|EFS14543.1| excinuclease ABC, C subunit [Shigella flexneri 2a str. 2457T]
 gi|332756062|gb|EGJ86415.1| excinuclease ABC, C subunit [Shigella flexneri 4343-70]
 gi|332757243|gb|EGJ87580.1| excinuclease ABC, C subunit [Shigella flexneri 2747-71]
 gi|332757471|gb|EGJ87806.1| excinuclease ABC, C subunit [Shigella flexneri K-671]
 gi|332766644|gb|EGJ96848.1| excinuclease ABC, C subunit [Shigella flexneri 2930-71]
 gi|333003001|gb|EGK22555.1| excinuclease ABC, C subunit [Shigella flexneri VA-6]
 gi|333003323|gb|EGK22869.1| excinuclease ABC, C subunit [Shigella flexneri K-218]
 gi|333004170|gb|EGK23702.1| excinuclease ABC, C subunit [Shigella flexneri K-272]
 gi|333017660|gb|EGK36972.1| excinuclease ABC, C subunit [Shigella flexneri K-304]
 gi|333017783|gb|EGK37090.1| excinuclease ABC, C subunit [Shigella flexneri K-227]
          Length = 610

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAACIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|187730924|ref|YP_001879701.1| excinuclease ABC subunit C [Shigella boydii CDC 3083-94]
 gi|229557864|sp|B2TXF7|UVRC_SHIB3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|187427916|gb|ACD07190.1| excinuclease ABC, C subunit [Shigella boydii CDC 3083-94]
          Length = 610

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           N +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 NDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALISK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|28199210|ref|NP_779524.1| excinuclease ABC subunit C [Xylella fastidiosa Temecula1]
 gi|32130274|sp|Q87BX2|UVRC_XYLFT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|28057316|gb|AAO29173.1| excinuclease ABC subunit C [Xylella fastidiosa Temecula1]
          Length = 621

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 225/607 (37%), Positives = 339/607 (55%), Gaps = 19/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M++Q+  +  T+T 
Sbjct: 17  HLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EALLLE  +IK L PR+N+LLRDDKS+PY+L+T +   P +  HR    + G YFGP
Sbjct: 77  NEAEALLLENQLIKSLTPRYNVLLRDDKSYPYVLLT-REAWPRIALHRGPQIVPGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  + AV   +N + + F LRSC DSVFR+R+RPCL +QI RCS PC   ++ + Y E V
Sbjct: 136 YPGMTAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
           H    FL G +  L E++ + M  A+   ++E A   RD L +L  +QN          +
Sbjct: 196 HRVTLFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +       AC+    F  G+N GT  FF KT+ E   A+ILS F+ Q+Y + P P  
Sbjct: 256 DVLACAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL +E  + +LLE +F +   +K+ +    +GE+   +E A+ NA  + + +L+++ + 
Sbjct: 316 ILLDQEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           ++  +   +   L    KR+E +D SH MG + V   VV    G V++QYR++N+    +
Sbjct: 376 RVRSEAVRQLLGLEGPIKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++ ++                PDV+ +DGG GQL+ A+  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMA 481

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  + VE  + ++ ++KG +R AG E   +  G+ L      P L FIQ++RDEAHRFAI
Sbjct: 482 LNAVGVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGAASPALQFIQQVRDEAHRFAI 540

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+K    S L++I GIG  R+  LL+ FG +  +  +    +A +EGIS  +A 
Sbjct: 541 TGHRARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAA 600

Query: 602 KIYNHFH 608
           KIY   H
Sbjct: 601 KIYASLH 607


>gi|271967322|ref|YP_003341518.1| excinuclease ABC subunit C [Streptosporangium roseum DSM 43021]
 gi|270510497|gb|ACZ88775.1| excinuclease ABC, C subunit [Streptosporangium roseum DSM 43021]
          Length = 649

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 191/635 (30%), Positives = 306/635 (48%), Gaps = 37/635 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY+     GRV+YVGKA NL++R+ SY         R   M++   ++ +TV 
Sbjct: 25  SIPESPGVYRFRGAEGRVIYVGKAKNLRQRLNSYFADFAGLHPRTQTMLTTAVDVDWTVV 84

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      YFG
Sbjct: 85  GTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMGEEFPRVQVLRGAKRKGTRYFG 144

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F +RSC+  VFR      RPCLL  I +CS PC   +++ ++
Sbjct: 145 PYSHAWAIRETVDLLLRVFPIRSCSAGVFRRAGQIGRPCLLGYIDKCSAPCVSRVTAVEH 204

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
                +   F++G      +++ R M QA   ++YE A   RD + AL         +  
Sbjct: 205 RTLAEDFCDFMAGNTGRFMKRLEREMRQAAADQEYERAARLRDDIQALLRAMEKQAVVLG 264

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +L  +   A +Q  +   G+ RG   + +    E+   +++  FL Q Y D 
Sbjct: 265 EGTDCDVIALAEDPLEAAVQVFYVRGGRIRGQRGWVVDKVEEAGPGELVEQFLLQMYGDA 324

Query: 298 PC---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  +L+     +   +     +    +V+I VP++G+K+ ++E    NA  S  Q
Sbjct: 325 TPEALPREVLVPVLPPDAEAVAELLSEHRKARVEIRVPQRGDKKSLMETVWRNAMESLKQ 384

Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                 S        L++      L   P R+E YD SHI G   V  MVV  +    K+
Sbjct: 385 HKLKRASDLTTRSKALQEVADALDLDQAPLRVECYDVSHIQGTDVVASMVVFEDGLARKS 444

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE------------ENLNFHPKKQEY 458
           +YR+F++   +     D A +  V+ RRF + ++              E        +  
Sbjct: 445 EYRRFSVRSTE----GDVASIYEVISRRFKRYLEERSATGELDAEPGAEPGIDPETGRPR 500

Query: 459 SFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEAL 518
            F   P++V++DGG  Q +AAQ  L +L V++ + +  +AK  +     E +   +   +
Sbjct: 501 KFAYPPNLVVVDGGPAQAAAAQRALDELGVDD-VAVCGLAKRLE-----EVWLPGEDLPV 554

Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGT 577
           +L      LY +QR+RDEAHRFAIT HR +R K+   S LDE+ G+GP R++ L++ FG+
Sbjct: 555 ILPRSSEALYLLQRVRDEAHRFAITYHRSKRSKSVKESALDEVPGLGPARRQALIKHFGS 614

Query: 578 VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           VK +  ++   +  I GI    A  I +       
Sbjct: 615 VKRLREATAAQICEIPGIGPATAETIVSALKGENP 649


>gi|260448970|gb|ACX39392.1| excinuclease ABC, C subunit [Escherichia coli DH1]
 gi|315136550|dbj|BAJ43709.1| UvrABC system protein C [Escherichia coli DH1]
          Length = 610

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMHDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|331663409|ref|ZP_08364319.1| excinuclease ABC subunit C [Escherichia coli TA143]
 gi|331059208|gb|EGI31185.1| excinuclease ABC subunit C [Escherichia coli TA143]
          Length = 610

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 337/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTETLVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE  +L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFILPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|117624056|ref|YP_852969.1| excinuclease ABC subunit C [Escherichia coli APEC O1]
 gi|189038049|sp|A1AC65|UVRC_ECOK1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|115513180|gb|ABJ01255.1| excinuclease ABC subunit C [Escherichia coli APEC O1]
 gi|323952408|gb|EGB48281.1| excinuclease ABC [Escherichia coli H252]
          Length = 610

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGSTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGIGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|315290293|gb|EFU49671.1| excinuclease ABC subunit C [Escherichia coli MS 153-1]
          Length = 610

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G  ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGNRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|218558771|ref|YP_002391684.1| excinuclease ABC subunit C [Escherichia coli S88]
 gi|226695576|sp|B7MCH0|UVRC_ECO45 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|218365540|emb|CAR03267.1| excinuclease UvrABC, endonuclease subunit [Escherichia coli S88]
          Length = 610

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGSTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMHQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGIGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|325496967|gb|EGC94826.1| excinuclease ABC subunit C [Escherichia fergusonii ECD227]
          Length = 610

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/614 (34%), Positives = 338/614 (55%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ I    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLTELAGRRINIQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTVHQRLSALATVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +NR  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKNRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPSDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|170680797|ref|YP_001743331.1| excinuclease ABC subunit C [Escherichia coli SMS-3-5]
 gi|226732184|sp|B1LQU4|UVRC_ECOSM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|170518515|gb|ACB16693.1| excinuclease ABC, C subunit [Escherichia coli SMS-3-5]
          Length = 610

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 337/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    ++  DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGIRPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|301029363|ref|ZP_07192460.1| excinuclease ABC subunit C [Escherichia coli MS 196-1]
 gi|299877789|gb|EFI86000.1| excinuclease ABC subunit C [Escherichia coli MS 196-1]
          Length = 610

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   +G ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDASGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|294085776|ref|YP_003552536.1| Nuclease subunit of the excinuclease complex [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665351|gb|ADE40452.1| Nuclease subunit of the excinuclease complex [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 638

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 252/613 (41%), Positives = 373/613 (60%), Gaps = 17/613 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PGVY+M +  G VLYVGKA +L +R+ +Y   N  ++RI  M+S+   +   
Sbjct: 31  ELKVLPHQPGVYRMTNGLGEVLYVGKARDLVRRVSNYTQPNRLSNRIMRMVSETEKLEVI 90

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +E+EALLLE+N+IK++KPR+NILLRDDKS P IL+T  H    L KHR     +G Y
Sbjct: 91  VTKSEIEALLLESNLIKKMKPRYNILLRDDKSLPQILLTADHDFGQLAKHRGRKNRKGDY 150

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFAS  +V +T+  L R F LR+C+DSVF  RTRPCL +QIKRC+ PC G ++   Y 
Sbjct: 151 FGPFASAGSVNRTVADLARAFMLRTCSDSVFATRTRPCLQYQIKRCTAPCVGYVNKADYA 210

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + +++A++FLSG +  ++   AR M+ A  K ++E+A I R+R+ AL+ IQ   D     
Sbjct: 211 KQMNQARRFLSGDSAQIQRDYARRMHDAAEKLEFETAAIWRNRIRALTGIQASQDINIPN 270

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  ++  +   +CIQ  F   G N G  ++FL     +  A+ L+ F+ QFY DK 
Sbjct: 271 LKDADIIAIAQSGARSCIQIFFIRGGSNYGNRSYFLTHPGTTPPAETLTAFMGQFYDDKE 330

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  ILL E  ++  L+  +   Q G  VK++ P++G + KI+  A+ NA  +  + L+ 
Sbjct: 331 APAEILLCEMPDDADLIADALSSQAGRTVKLSSPQRGARHKIMTMAIKNAEEALARHLAN 390

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             S + +L +  +   L   P+RIEIYDNSHI G  AVG MVV G  GF+K+ YR+FN+ 
Sbjct: 391 SASQRRLLGELAEALGLAAAPERIEIYDNSHIQGKHAVGGMVVAGAEGFMKSAYRRFNIK 450

Query: 419 PNDVKTQ---DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +        DD  MMR V+ RRF + +K + +             +WPD++++DGGKGQ
Sbjct: 451 DDGKFGTVQGDDFEMMRQVINRRFERALKEDPDRLSD---------NWPDLLLIDGGKGQ 501

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           LSA   V+++L V + I +++I+KGP R+AG E+F +   ++  L      ++F+QRLRD
Sbjct: 502 LSAVTEVMEELGVSD-IDVVAISKGPDRNAGREQFHMNGRQSFTLPPNASAMHFLQRLRD 560

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHR+AI THR +R K    SPLD + GIGP RK+ LL  FG+ + +S +  + L ++EG
Sbjct: 561 EAHRYAIGTHRSKRLKTELTSPLDAVPGIGPKRKKALLAHFGSARAVSAAGLKDLEAVEG 620

Query: 595 ISKKIACKIYNHF 607
           ISK  A +I++ F
Sbjct: 621 ISKTFAQQIFDWF 633


>gi|167624269|ref|YP_001674563.1| excinuclease ABC subunit C [Shewanella halifaxensis HAW-EB4]
 gi|189038091|sp|B0TIW9|UVRC_SHEHH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|167354291|gb|ABZ76904.1| excinuclease ABC, C subunit [Shewanella halifaxensis HAW-EB4]
          Length = 609

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 210/616 (34%), Positives = 324/616 (52%), Gaps = 28/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY   N    +   ++S I NI  TV
Sbjct: 11  LKTVTSSPGVYRMYDAKAVVIYVGKAKDLKKRLSSYFRKNLTNVKTQALVSHIANIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E +AL+LE + IK+  P++N+LLRDDKS+PYIL+++ HK P L  HR     +G YF
Sbjct: 71  THSETDALILENDYIKQYMPKYNVLLRDDKSYPYILLSN-HKHPRLAYHRGPKRDKGLYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV ++++ LQ+ F +R C D  ++ R+RPCL +QI RCS PC G++S E Y E
Sbjct: 130 GPYPNGGAVRESLHLLQKIFPIRQCDDLYYKSRSRPCLQYQIGRCSAPCVGKVSLEDYQE 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            V  A  FL G +H +   +   M QA     YE A ++RD++ AL  +    +      
Sbjct: 190 QVRLATLFLKGKDHQVMSVLVGKMEQAASDMRYEQAALYRDQITALRRVSEQQEVSNASG 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC- 299
            MD    Y+   +AC    F   G+  G+ +++ K    +  +++L  F+ QFY +    
Sbjct: 250 DMDVIGAYYASGVACFHLLFIREGKIFGSRSYYPKVPVNTEVSEVLRSFMLQFYLNSDSQ 309

Query: 300 ---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ IL+SE  EE   L  +       KV+I    +GE+   +  AL NA  +   +L
Sbjct: 310 RLTPKEILISEPFEEQDELAKAIQAAQNKKVEIKTQVRGERASFLRLALTNATNAVNTRL 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +       +     +  +R+E +D SH MG S V   VV    G  K  YR++N
Sbjct: 370 SHKNTIEQRFLLLEEAIESTNKIQRMECFDISHTMGESTVASCVVFNREGPSKADYRRYN 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M+  + RRF ++                S    PD++ +DGG GQL
Sbjct: 430 I--TGITPGDDYAAMKQAITRRFDKI---------------SSSGKIPDILFIDGGIGQL 472

Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRL 533
             AQ V+ +  + ++N  T+I +AKG  R  G+E     + E    L      L+ IQ +
Sbjct: 473 RIAQKVVDEKFVALDNAPTLIGVAKGEGRKPGLETLIYGENEESFTLPADSGALHLIQHI 532

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR +R+K    S L+ I G+GP R++ LLQ  G ++ +  +S   L  +
Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQYLGGLQEVKGASVSELVKV 592

Query: 593 EGISKKIACKIYNHFH 608
            GIS ++A  I++   
Sbjct: 593 PGISLEMAQTIHDALR 608


>gi|260868505|ref|YP_003234907.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O111:H- str. 11128]
 gi|257764861|dbj|BAI36356.1| excinuclease UvrABC, endonuclease subunit UvrC [Escherichia coli
           O111:H- str. 11128]
 gi|323180837|gb|EFZ66377.1| excinuclease ABC, C subunit [Escherichia coli 1180]
          Length = 610

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R  G+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGVDRKVGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|149185958|ref|ZP_01864273.1| excinuclease ABC subunit C [Erythrobacter sp. SD-21]
 gi|148830519|gb|EDL48955.1| excinuclease ABC subunit C [Erythrobacter sp. SD-21]
          Length = 655

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 256/610 (41%), Positives = 361/610 (59%), Gaps = 8/610 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +   PGVY+MLD  G VLYVGKA +L+ R+ +Y      ++R+  M+SQ   +   VT
Sbjct: 46  KTLKPRPGVYRMLDTRGDVLYVGKARSLKARVANYTQVKGLSNRLQRMVSQCRAMEIVVT 105

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EALLLEA +IKR +P FN+LLRDDKSFP+IL+   H  P + KHR +   +G+Y+G
Sbjct: 106 NSEAEALLLEAQLIKRYRPPFNVLLRDDKSFPFILLRADHAFPRIQKHRGARRAKGNYYG 165

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  +V KT+N+LQ+ F LRSC DS F +R RPCLL+QIKRCS PC G I    Y   
Sbjct: 166 PFASAGSVNKTLNALQKLFLLRSCTDSFFNNRDRPCLLYQIKRCSAPCVGRIDEAGYDAL 225

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V+EAK FLSG +  ++  I + M +A    D+E+A I RDRL A + IQ           
Sbjct: 226 VNEAKDFLSGKSSAVQANIEKQMAKAAEDLDFETAAILRDRLRAATFIQGSQAINASGVG 285

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+L        +Q  F   GQN G   FF K   +  + ++LS  L QFY + P P
Sbjct: 286 DADVFALAAKGGQIGVQAFFIRGGQNWGHKAFFPKNTGDLEHDEVLSDVLLQFYEEVPPP 345

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             IL+  +  E  L+  +  ++ G+ V I++P++G++RK++ QA  NA  S  ++L+   
Sbjct: 346 RTILVDRDLAEQELIAEALAEKAGHAVAISIPQRGDRRKLMSQAQRNAVESLERRLAESG 405

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +    L++  +   L   P+RIEIYDNSHI G  A+G MVV    GF K QYRKFN++  
Sbjct: 406 TKAQRLRELAEFLELEEPPQRIEIYDNSHIQGDKALGAMVVASPEGFEKGQYRKFNINTA 465

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
                DD  MMR V+ RRF +L + E + +  P  + +    WPD++++DGGKGQ+S+  
Sbjct: 466 QT--NDDFGMMREVMSRRFRKLAETERDSDGAPGGKGHE-AIWPDLLLIDGGKGQVSSVM 522

Query: 481 GVLKKLNVENRITIISIAKGPKR-SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           GVL+ L +  ++ +I IAKGP     G E F    G    L +   +L+++Q LRDE HR
Sbjct: 523 GVLEDLGIAEQVPVIGIAKGPHHGREGREVFHFPDGREKTLPVNSQLLFYLQTLRDEVHR 582

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           +AI  HR +R +A   SPLDEI GIGP RKR LL  FGT   +  ++ + L    GIS  
Sbjct: 583 YAIGAHRAKRSRAITASPLDEIPGIGPARKRALLLHFGTAGKVRAAALDDLKRAPGISAG 642

Query: 599 IACKIYNHFH 608
           +A +IY+ +H
Sbjct: 643 VAQQIYDFYH 652


>gi|329849460|ref|ZP_08264306.1| excinuclease ABC, C subunit [Asticcacaulis biprosthecum C19]
 gi|328841371|gb|EGF90941.1| excinuclease ABC, C subunit [Asticcacaulis biprosthecum C19]
          Length = 634

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 269/607 (44%), Positives = 371/607 (61%), Gaps = 10/607 (1%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P+ PGVY+ML   G VLYVGKA +L+KR+  Y     HT RI  M++    +    T TE
Sbjct: 34  PDKPGVYRMLGDDGEVLYVGKAKSLKKRVLQYAQGRFHTQRIARMVALTREMVLIRTDTE 93

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLEA +IK LKPR+N+LLRDDK F  IL+   H+ P + KHR + +I G YFGPFA
Sbjct: 94  GEALLLEARLIKALKPRYNVLLRDDKMFAEILVRKDHEAPQVTKHRGAHSIPGDYFGPFA 153

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  AV  T+++LQ+ F LR+C DSV+  RTRPC+L QIKRCS PCTG IS   Y     +
Sbjct: 154 STFAVNNTLDTLQKAFLLRTCTDSVYASRTRPCMLHQIKRCSAPCTGVISLPDYNALASQ 213

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DC 244
           A  FL G +  + E+++  M QA+ + D+E A   RDR+ AL+H+        N    D 
Sbjct: 214 AHDFLRGKSRKVIERMSAEMMQASDEMDFERAAHLRDRVRALNHVAMSTSVDLNEEEADV 273

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
           FS++     AC+Q  F+  GQN G   +F + DSE T   IL  FL QFY D+  P  IL
Sbjct: 274 FSVFAQGGGACVQVVFYRAGQNWGDRAYFPRVDSEDTEGAILDAFLGQFYQDRQVPRLIL 333

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           +S +  E  L+  +   + G KV+IT P +G K +I++ AL NA  +  ++L+   +   
Sbjct: 334 VSHDLNEPDLMMEALSLKAGRKVQITRPMRGGKCEIVQHALNNAKAALGRRLAEHSAQSK 393

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
           +L+   + F L   P RIE+YDNSH+ G  AVG MVV G  GF+K QYRKF +   D K 
Sbjct: 394 LLQGVAEAFGLDAPPIRIEVYDNSHLGGTHAVGGMVVAGPEGFMKGQYRKFTIRDLDTKP 453

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD AMM  V  RRF +LIK ++         +      PD+V++DGG+GQL A  GV+ 
Sbjct: 454 GDDYAMMAEVFRRRFMRLIKEKDVPEGEKAFGK------PDLVLVDGGQGQLDAVLGVMA 507

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L +E+ I I+ +AKGP R AG+E+FF+      ++  + P+LY++QRLRDEAHR+AI  
Sbjct: 508 ELAMED-IRIVGVAKGPDRDAGLERFFMPGRLPFMMEPKSPVLYYLQRLRDEAHRYAIGA 566

Query: 545 HRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +R +R KA   +PLD+I+GIG  RKR LL +FG+ + ++ +  E L  +EGIS  +A KI
Sbjct: 567 NRHKRDKAISQNPLDDIDGIGARRKRALLAAFGSGREVASARVEELQKVEGISAALAQKI 626

Query: 604 YNHFHKN 610
           Y+ FH  
Sbjct: 627 YDFFHGE 633


>gi|215426757|ref|ZP_03424676.1| excinuclease ABC subunit C [Mycobacterium tuberculosis T92]
 gi|289749978|ref|ZP_06509356.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis T92]
 gi|289690565|gb|EFD57994.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis T92]
          Length = 646

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 184/638 (28%), Positives = 306/638 (47%), Gaps = 34/638 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   +++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC   + + ++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCISRVDAAQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG        + + MN A  + D+E A   RD L+AL         +  
Sbjct: 193 RQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQFY- 294
                D  +   ++  A +Q      G+ RG   + ++   E   +  Q++  FL QFY 
Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKPGEPGDSGIQLVEQFLTQFYG 312

Query: 295 -----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
                      +  P P  +L+         L        G +V + VP++G+KR + E 
Sbjct: 313 DQAALDDAADESANPVPREVLVPCLPSNAEELASWLSGLRGSRVVLRVPRRGDKRALAET 372

Query: 344 ALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
              NA  +  Q      S        L+       L   P RIE  D SH+ G   VG +
Sbjct: 373 VHRNAEDALQQHKLKRASDFNARSAALQSIQDSLGLADAPLRIECVDVSHVQGTDVVGSL 432

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQE 457
           VV  +    K+ YR F +     + + DD A +  V  RRF + ++++ + +   P+++ 
Sbjct: 433 VVFEDGLPRKSDYRHFGIREAAGQGRSDDVACIAEVTRRRFLRHLRDQSDPDLLSPERKS 492

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
             F   P++ ++DGG  Q++AA  V+ +L V + + +I +AK  +     E +   + + 
Sbjct: 493 RRFAYPPNLYVVDGGAPQVNAASAVIDELGVTD-VAVIGLAKRLE-----EVWVPSEPDP 546

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFG 576
           +++      LY +QR+RDEAHRFAIT HR +R  +   S LD + G+G  R++ L+  FG
Sbjct: 547 IIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSTRMTASALDSVPGLGEHRRKALVTHFG 606

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           ++  +  ++ + + ++ GI    A  +++    ++S  
Sbjct: 607 SIARLKEATVDEITAVPGIGVATATAVHDALRPDSSGA 644


>gi|194434969|ref|ZP_03067212.1| excinuclease ABC, C subunit [Shigella dysenteriae 1012]
 gi|194416804|gb|EDX32930.1| excinuclease ABC, C subunit [Shigella dysenteriae 1012]
 gi|320178185|gb|EFW53162.1| Excinuclease ABC subunit C [Shigella boydii ATCC 9905]
 gi|332095447|gb|EGJ00468.1| excinuclease ABC, C subunit [Shigella dysenteriae 155-74]
          Length = 610

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPTDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|324113631|gb|EGC07606.1| excinuclease ABC [Escherichia fergusonii B253]
          Length = 610

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 338/614 (55%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHALFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLTELAGRRINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTVHQRLSALATVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +NR  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKNRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPSDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|161502932|ref|YP_001570044.1| excinuclease ABC subunit C [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864279|gb|ABX20902.1| hypothetical protein SARI_00991 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 607

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 8   LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 68  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 127 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 186

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+ +  +E A   RD++ A+  +          
Sbjct: 187 QQVEYVRLFLSGKDDQVLTQLIARMEKASQELAFEEAARIRDQIQAVRRVTERQFVSNTG 246

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 247 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 306

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     +  LL  S  +  G ++ +    +G++ + ++ A  NA  + T K
Sbjct: 307 MRTLPGEILLDFNLSDKMLLADSLSELAGRRIYVQTKPRGDRARYLKLARTNAATALTTK 366

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 367 LSQQSTVTQRLTALATVLKLPTVK-RMECFDISHTMGEQTVASCVVFDANGPIRAEYRRY 425

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 426 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 468

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 469 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFCLPPDSPALHVIQ 528

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDEAH  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 529 HIRDEAHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 588

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 589 KVPGISQGLAEKIF 602


>gi|15608558|ref|NP_215936.1| excinuclease ABC subunit C [Mycobacterium tuberculosis H37Rv]
 gi|15840877|ref|NP_335914.1| excinuclease ABC subunit C [Mycobacterium tuberculosis CDC1551]
 gi|31792614|ref|NP_855107.1| excinuclease ABC subunit C [Mycobacterium bovis AF2122/97]
 gi|121637350|ref|YP_977573.1| excinuclease ABC subunit C [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148661211|ref|YP_001282734.1| excinuclease ABC subunit C [Mycobacterium tuberculosis H37Ra]
 gi|148822640|ref|YP_001287394.1| excinuclease ABC subunit C [Mycobacterium tuberculosis F11]
 gi|215430307|ref|ZP_03428226.1| excinuclease ABC subunit C [Mycobacterium tuberculosis EAS054]
 gi|218753128|ref|ZP_03531924.1| excinuclease ABC subunit C [Mycobacterium tuberculosis GM 1503]
 gi|224989825|ref|YP_002644512.1| excinuclease ABC subunit C [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799530|ref|YP_003032531.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis KZN
           1435]
 gi|254231660|ref|ZP_04924987.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium
           tuberculosis C]
 gi|254364302|ref|ZP_04980348.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254550434|ref|ZP_05140881.1| excinuclease ABC subunit C [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260200474|ref|ZP_05767965.1| excinuclease ABC subunit C [Mycobacterium tuberculosis T46]
 gi|260204685|ref|ZP_05772176.1| excinuclease ABC subunit C [Mycobacterium tuberculosis K85]
 gi|289442865|ref|ZP_06432609.1| excinuclease ABC, C subunit [Mycobacterium tuberculosis T46]
 gi|289554790|ref|ZP_06444000.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis KZN
           605]
 gi|289574089|ref|ZP_06454316.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis K85]
 gi|289753502|ref|ZP_06512880.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis EAS054]
 gi|289761579|ref|ZP_06520957.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium
           tuberculosis GM 1503]
 gi|297633976|ref|ZP_06951756.1| excinuclease ABC subunit C [Mycobacterium tuberculosis KZN 4207]
 gi|297730965|ref|ZP_06960083.1| excinuclease ABC subunit C [Mycobacterium tuberculosis KZN R506]
 gi|306775603|ref|ZP_07413940.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu001]
 gi|306780751|ref|ZP_07419088.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu002]
 gi|306784150|ref|ZP_07422472.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu003]
 gi|306788520|ref|ZP_07426842.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu004]
 gi|306792843|ref|ZP_07431145.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu005]
 gi|306797241|ref|ZP_07435543.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu006]
 gi|306803124|ref|ZP_07439792.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu008]
 gi|306807320|ref|ZP_07443988.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu007]
 gi|306967518|ref|ZP_07480179.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu009]
 gi|306971711|ref|ZP_07484372.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu010]
 gi|307079421|ref|ZP_07488591.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu011]
 gi|307083990|ref|ZP_07493103.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu012]
 gi|313658298|ref|ZP_07815178.1| excinuclease ABC subunit C [Mycobacterium tuberculosis KZN V2475]
 gi|54039844|sp|P67427|UVRC_MYCBO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|54042752|sp|P67426|UVRC_MYCTU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038066|sp|A1KIK9|UVRC_MYCBP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038071|sp|A5U2C2|UVRC_MYCTA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764938|sp|C1AN65|UVRC_MYCBT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|1542929|emb|CAB02168.1| PROBABLE EXCINUCLEASE ABC (SUBUNIT C-NUCLEASE) UVRC [Mycobacterium
           tuberculosis H37Rv]
 gi|13881078|gb|AAK45728.1| excinuclease ABC, subunit C [Mycobacterium tuberculosis CDC1551]
 gi|31618203|emb|CAD94316.1| PROBABLE EXCINUCLEASE ABC SUBUNIT C UVRC [Mycobacterium bovis
           AF2122/97]
 gi|121492997|emb|CAL71468.1| Probable excinuclease ABC subunit c uvrC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600719|gb|EAY59729.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium
           tuberculosis C]
 gi|134149816|gb|EBA41861.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148505363|gb|ABQ73172.1| excinuclease ABC subunit C [Mycobacterium tuberculosis H37Ra]
 gi|148721167|gb|ABR05792.1| excinuclease ABC subunit C (nuclease) uvrC [Mycobacterium
           tuberculosis F11]
 gi|224772938|dbj|BAH25744.1| excinuclease ABC subunit C [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321033|gb|ACT25636.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis KZN
           1435]
 gi|289415784|gb|EFD13024.1| excinuclease ABC, C subunit [Mycobacterium tuberculosis T46]
 gi|289439422|gb|EFD21915.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis KZN
           605]
 gi|289538520|gb|EFD43098.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis K85]
 gi|289694089|gb|EFD61518.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis EAS054]
 gi|289709085|gb|EFD73101.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium
           tuberculosis GM 1503]
 gi|308215913|gb|EFO75312.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu001]
 gi|308326410|gb|EFP15261.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu002]
 gi|308331096|gb|EFP19947.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu003]
 gi|308334907|gb|EFP23758.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu004]
 gi|308338716|gb|EFP27567.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu005]
 gi|308342402|gb|EFP31253.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu006]
 gi|308346243|gb|EFP35094.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu007]
 gi|308350195|gb|EFP39046.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu008]
 gi|308354836|gb|EFP43687.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu009]
 gi|308358785|gb|EFP47636.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu010]
 gi|308362722|gb|EFP51573.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu011]
 gi|308366355|gb|EFP55206.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           SUMu012]
 gi|323720084|gb|EGB29190.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           CDC1551A]
 gi|328459278|gb|AEB04701.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis KZN
           4207]
          Length = 646

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 185/638 (28%), Positives = 307/638 (48%), Gaps = 34/638 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   +++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G + + ++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVDAAQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG        + + MN A  + D+E A   RD L+AL         +  
Sbjct: 193 RQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQFY- 294
                D  +   ++  A +Q      G+ RG   + ++   E   +  Q++  FL QFY 
Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKPGEPGDSGIQLVEQFLTQFYG 312

Query: 295 -----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
                      +  P P  +L+         L        G +V + VP++G+KR + E 
Sbjct: 313 DQAALDDAADESANPVPREVLVPCLPSNAEELASWLSGLRGSRVVLRVPRRGDKRALAET 372

Query: 344 ALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
              NA  +  Q      S        L+       L   P RIE  D SH+ G   VG +
Sbjct: 373 VHRNAEDALQQHKLKRASDFNARSAALQSIQDSLGLADAPLRIECVDVSHVQGTDVVGSL 432

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQE 457
           VV  +    K+ YR F +     + + DD A +  V  RRF + ++++ + +   P+++ 
Sbjct: 433 VVFEDGLPRKSDYRHFGIREAAGQGRSDDVACIAEVTRRRFLRHLRDQSDPDLLSPERKS 492

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
             F   P++ ++DGG  Q++AA  V+ +L V + + +I +AK  +     E +   + + 
Sbjct: 493 RRFAYPPNLYVVDGGAPQVNAASAVIDELGVTD-VAVIGLAKRLE-----EVWVPSEPDP 546

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFG 576
           +++      LY +QR+RDEAHRFAIT HR +R  +   S LD + G+G  R++ L+  FG
Sbjct: 547 IIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSTRMTASALDSVPGLGEHRRKALVTHFG 606

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           ++  +  ++ + + ++ GI    A  +++    ++S  
Sbjct: 607 SIARLKEATVDEITAVPGIGVATATAVHDALRPDSSGA 644


>gi|320184741|gb|EFW59533.1| Excinuclease ABC subunit C [Shigella flexneri CDC 796-83]
          Length = 610

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   + E   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEDEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|145298551|ref|YP_001141392.1| excinuclease ABC, subunit C [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851323|gb|ABO89644.1| excinuclease ABC, subunit C [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 616

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 338/614 (55%), Gaps = 31/614 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D  G V+YVGKA +L+KR+ SY  +N  + +   ++ QI +I+  VT TE 
Sbjct: 19  HQSGVYRMYDSGGTVIYVGKAKDLKKRLASYFRTNVDSIKTRTLVRQIADIQVMVTHTET 78

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL+LE N+IK+ +PR+N+LLRDDKS+P+I+IT  H+ P +  HR +  I+G YFGP+ S
Sbjct: 79  EALILEHNLIKQYQPRYNVLLRDDKSYPWIIIT-AHQHPRIGVHRGARKIKGEYFGPYPS 137

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHE 186
             AV ++++ +Q+ F +R C D+V+ +RTRPCLL+Q+KRC+GPC    +S  +Y + V  
Sbjct: 138 GGAVRESLHLMQKIFPVRQCEDAVYANRTRPCLLYQLKRCAGPCVAGLVSEAEYAQQVGL 197

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMD 243
           AK FL+G N  +  ++   M  A+    +E A  +RD++ AL  +           + +D
Sbjct: 198 AKLFLAGKNQQVIGELVGKMESASGDLRFEEAARYRDQIQALRRVTEQQSVSGNVLDDLD 257

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----DKPC 299
              +   +  ACI   F   G+  G+ ++F K  S++   +++  FL QFY      +  
Sbjct: 258 VIGVAFEQGAACIHVLFIRQGKVLGSRSYFPKVPSDTPLEEVVQSFLLQFYLSGQGGRQI 317

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  +LL    E+ +L+  +  +  GYKV++    + E+ + I+ A INA  +   +L+ +
Sbjct: 318 PSEVLLDVALEDETLIADTLSQTAGYKVRVVSRTRAERARFIKLASINAETALRSRLAHK 377

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +         +   L     R+E YD SH MG   V   VV    G + ++YR+FN+  
Sbjct: 378 STTTARFSQLEELLELERPIARMECYDISHTMGERTVASCVVFNREGPLSSEYRRFNI-- 435

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA- 478
           + +   DD A M  VLERRF +L + ++                PDV+ +DGG GQL   
Sbjct: 436 DGITGGDDYAAMEQVLERRFGKLQEPDK---------------VPDVLFIDGGLGQLRRA 480

Query: 479 --AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRD 535
                  ++        ++ IAKG  R AG+E   + +  E L L    P L+ IQ +RD
Sbjct: 481 EEILARQQEFLGGKYPLLVGIAKGVTRKAGLETLIMGESHEELHLPADMPALHLIQHIRD 540

Query: 536 EAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+HRFAIT HR RR KA  S  L++I G+GP R++ LL+  G ++ + ++  + LA + G
Sbjct: 541 ESHRFAITGHRARRAKARTSSTLEDIPGVGPKRRQALLKYLGGLQEVKKAGVDDLAKVPG 600

Query: 595 ISKKIACKIYNHFH 608
           IS+++A  I++   
Sbjct: 601 ISQELAQSIHDALR 614


>gi|238895471|ref|YP_002920206.1| excinuclease ABC subunit C [Klebsiella pneumoniae NTUH-K2044]
 gi|330001010|ref|ZP_08303870.1| excinuclease ABC, C subunit [Klebsiella sp. MS 92-3]
 gi|238547788|dbj|BAH64139.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537814|gb|EGF64009.1| excinuclease ABC, C subunit [Klebsiella sp. MS 92-3]
          Length = 610

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 209/618 (33%), Positives = 337/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++ I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FL+G +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLAGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLGDKTLLADSLSELAGRRINVQTKPRGDRARYLKLARTNAATALTTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L+       LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTIHQRLQALASVLELPAVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDNK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHHPLLLGVAKGSDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI+ HRK+R K    S L+ I G+GP R+++LL+  G ++ + ++S E +A
Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQGLQQASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI+    
Sbjct: 592 KVPGISHALAEKIFYSLK 609


>gi|119367629|sp|Q2KXM9|UVRC_BORA1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 607

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 323/614 (52%), Gaps = 29/614 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+ LD AG V+YVGKA +L+KR+ SY      + RI  M+S++  +  TVT 
Sbjct: 13  DLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKTLASPRIAQMVSKVVRLEVTVTR 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+IK L+PR+NIL RDDKS+PY+LIT  H+ P +  +R S++ +G YFGP
Sbjct: 73  SEAEALILENNLIKSLRPRYNILFRDDKSYPYLLIT-AHEWPRIAYYRGSTSKRGQYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  AV +TI  LQ+ F LR+C D+VF +R+RPCLL+QI RCSGPC   I +E Y   V
Sbjct: 132 YPNSWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLYQIGRCSGPCVQAIDAEDYRRDV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241
             A +FL+G    + ++I   M QA+ +  +E A + RD++ +LS + +     +     
Sbjct: 192 QRAARFLNGEAREVMDEIEARMQQASGELRFEEAAVLRDQMGSLSKVLHQQTMENVGGED 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  ++       C+       G++ G   FF         AQ+   F+ Q Y D   P 
Sbjct: 252 TDVIAVASAGGKVCVNLAMVRGGRHLGDKPFFPSHADGEEAAQVQEAFIAQHYADNVLPP 311

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++ S    +  L+     +Q G + ++    QG +R  +EQA  NA  +  + L+   +
Sbjct: 312 VLVCSHALPDVDLI-GLLSEQAGTRCRVLTRPQGVRRSWLEQAQKNAEMALARALTESGA 370

Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                    +   L          RIE +D SH  G +     VV   +    + YR++N
Sbjct: 371 RAARTLSLAEALDLDTDEAALDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYN 430

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A MR VL RRF+++   E                 P +V++DGGKGQ+
Sbjct: 431 IVG--ITPGDDYAAMRQVLTRRFAKVTDGE--------------APMPGLVLIDGGKGQV 474

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535
             A+ V  +L ++    ++ +AKG  R  G+E          L L      L  I ++RD
Sbjct: 475 EVARQVFVELGLDIG-ALVGVAKGEGRKVGLETLVFADARAPLALGKASAALMLIAQVRD 533

Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT  R +R K    S L+EI G+G  R++ LL  FG +  ++ +S E LAS++G
Sbjct: 534 EAHRFAITGMRAKRAKTRNVSRLEEIEGVGAKRRQRLLARFGGLSGVTSASIEDLASVDG 593

Query: 595 ISKKIACKIYNHFH 608
           IS  +A +IY+  H
Sbjct: 594 ISMDLAERIYDALH 607


>gi|16760892|ref|NP_456509.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141416|ref|NP_804758.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053517|ref|ZP_03346395.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426360|ref|ZP_03359110.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580419|ref|ZP_03362245.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213650332|ref|ZP_03380385.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289824068|ref|ZP_06543666.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|21264111|sp|Q8Z5T3|UVRC_SALTI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|25300672|pir||AD0749 excinuclease ABC chain C STY2154 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503189|emb|CAD05695.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137043|gb|AAO68607.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 610

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALVTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALATVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|317491609|ref|ZP_07950045.1| excinuclease ABC [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921156|gb|EFV42479.1| excinuclease ABC [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 610

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 216/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY   N  + +   ++  I  I  TV
Sbjct: 11  LKTVTHQPGVYRMYDATETVIYVGKAKDLKKRLSSYFRQNVGSRKTETLVKNIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADTHPRLSIHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNSYAVRETLALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVKGLVSDEEYE 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
           + V+  + FLSG ++ + E +   M  A+    +E A   RD++ A+  +          
Sbjct: 190 QQVNYVRLFLSGKDNQVLESLVVRMEDASKALKFEEAARIRDQIQAVRRVTEKQFVSGNS 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K  S +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDSGMACVHVLFIRQGKILGSRSYFPKVPSGTELSEVVQTFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E  +L  S  +  G KV I    +G++ + ++ A  NA  + + K
Sbjct: 310 IRTLPGEILLDFTLPEKDILSDSISELAGRKVNIQTRPRGDRARYLKLAKTNAQTALSTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L +  K   L     R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 370 LSQQSTIHQRLTELEKVLHLS-DIHRMECFDISHTMGEETVASCVVFDRNGPVRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  N +   DD A M  VL RR+ + ++ ++                PDV+ +DGGKGQ
Sbjct: 429 NI--NGITPGDDYAAMNQVLRRRYGKALEEDK---------------IPDVIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V  +L+V   ++R  ++ IAKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LGQAKEVFSELDVPWDKHRPLLLGIAKGSDRKAGLETLFLQPEGEGFSLPPDSPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HRK+R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAITGHRKKRAKVRNTSSLETIEGVGPKRRQTLLKYMGGLQPLMNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KI+N   
Sbjct: 592 KVPGISQALAEKIHNALK 609


>gi|167628788|ref|YP_001679287.1| excinuclease abc, c subunit [Heliobacterium modesticaldum Ice1]
 gi|167591528|gb|ABZ83276.1| excinuclease abc, c subunit [Heliobacterium modesticaldum Ice1]
          Length = 635

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 208/622 (33%), Positives = 327/622 (52%), Gaps = 22/622 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +PE PGVY   D AG+V+YVGKA NL+ R++SY  S+ N   +   ++++I ++  
Sbjct: 8   KLKSLPEKPGVYLYKDEAGQVIYVGKAINLKNRVRSYFQSSRNLNAKTQALVARICDLET 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  KPR+NI+LRDDK++PY+ +T +   P L   R        
Sbjct: 68  IVTDSELEALILECNLIKEHKPRYNIMLRDDKTYPYLKVTLQETYPRLLITRRLEKDGAK 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ S  AV +T+  L+  F LR+C+      R RPCL   I RC  PC G +   +Y
Sbjct: 128 YFGPYTSAGAVRETVELLRTLFPLRTCSRREPDRRQRPCLNHHIGRCLAPCAGRVPRREY 187

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
           M  +     FL G    L++++   M +A    ++E A   R+R+ AL  +         
Sbjct: 188 MALIGSIVAFLEGKEEELRKRLQGEMEEAAENLEFERAATLRNRIRALDQVMEKQKVFST 247

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++    N  C+Q  F   G+  G   + L+   E   +++++ F++Q+Y+  
Sbjct: 248 DLADQDVIAMARGFNQVCVQIFFIRGGKLLGREHYILEGTDEMDRSEVITAFVKQYYSRS 307

Query: 298 P-CPENILLS---EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349
              P  ILL    E AEE  L+     ++   +V++ VPK+G+K K++E    NA     
Sbjct: 308 DFVPREILLQEPLESAEEEELINRFLREKRQGRVELRVPKRGDKLKLVEMVAKNALLTLE 367

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +   ++   +   +  + D  +   L   P RIE +D S+ MG  +V  MVV       K
Sbjct: 368 QLQNEQQRKKSMTEEAVLDLQRYLGLDEPPWRIECFDISNTMGKESVASMVVFEGGAPKK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVI 468
           + YR+F +    V+  +D A M  VL RRF++  +   E    H       F + PD+VI
Sbjct: 428 SDYRRFRIKT--VEGPNDFASMAEVLTRRFNRAREEAREVDAGHLDPMSAKFATLPDLVI 485

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQLS+A+  + +   +N I    +AK  +       F     + ++L      LY
Sbjct: 486 VDGGKGQLSSAREAMARTGYDN-IATYGLAKENEW-----LFHESNPDPIILPRGSRALY 539

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            IQR+RDEAHRFAIT HR+ R +A   S LD I GIGP R+  LL+ FG+VK I+ ++  
Sbjct: 540 LIQRIRDEAHRFAITYHRQLRTRAQTASALDGIAGIGPKRRTALLRHFGSVKAIAAATVA 599

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            LA++EG+++ +A ++ +    
Sbjct: 600 QLAAVEGMTEALAEQVLSALKP 621


>gi|288934572|ref|YP_003438631.1| excinuclease ABC, C subunit [Klebsiella variicola At-22]
 gi|288889281|gb|ADC57599.1| excinuclease ABC, C subunit [Klebsiella variicola At-22]
          Length = 610

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 209/618 (33%), Positives = 336/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++ I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FL+G +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLAGKDDQVLTQLIARMEKASQSLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +     +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFEAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFSLGDKTLLAESLSELAGRRINVQTKPRGDRARYLKLARTNAATALTTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+ + +    L+       LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LAQQSTIHQRLQALATVLELPAVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+S+ I   +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYSKAIDENK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHHPLLLGVAKGSDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI+ HRK+R K    S L+ I G+GP R+++LL+  G ++ + ++S E +A
Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQGLQQASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI+    
Sbjct: 592 KVPGISHGLAEKIFYSLK 609


>gi|300114139|ref|YP_003760714.1| excinuclease ABC subunit C [Nitrosococcus watsonii C-113]
 gi|299540076|gb|ADJ28393.1| excinuclease ABC, C subunit [Nitrosococcus watsonii C-113]
          Length = 599

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 227/611 (37%), Positives = 347/611 (56%), Gaps = 25/611 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +  CPGVY+MLD  G+VLYVGKA NL++R+ SY  ++    +I  +++QI NI+ TV
Sbjct: 10  LKNLTACPGVYRMLDAKGKVLYVGKAKNLKRRVGSYFRNSKLAPKIRILVNQIYNIKITV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N+IK L+PR+N+LL+DDKS+PYI ++     P L  HR +    G YF
Sbjct: 70  THTENEALILENNLIKALQPRYNVLLKDDKSYPYIFLS-ADDFPHLGFHRGAKQAPGQYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ SV +V +T+  LQ  F +R C D+ +R+R+RPCL +QIKRC+ PC G IS E Y +
Sbjct: 129 GPYPSVSSVWQTLKLLQGVFPVRQCEDNFYRNRSRPCLQYQIKRCTAPCVGLISKEDYNQ 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240
            +     FL G +  +  ++   M +A+ +  +E A  +RDR+A+L  IQ          
Sbjct: 189 DIQHVVMFLKGRDQQVINELVIRMEEASQQLAFEQAAYYRDRVASLRRIQARQYISGKKM 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
            +D   +   + +AC++  F   G N G  TF  K +   T  ++LS F+ Q+Y ++  P
Sbjct: 249 DIDVLGVILAERMACVEVFFIRGGYNLGNKTFLPKLEGNLTPQELLSAFIAQYYLNREIP 308

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ++LS + ++ +LL     +Q G K+ +  P +G K + ++ AL NA  +  Q L+ + 
Sbjct: 309 PVLVLSHQPKDMNLLTEVLSEQAGRKITLIKPDRGPKVQWVKMALTNAKINLDQCLAKKS 368

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S     K   +   L + P+RIE +D SHI G S V   +V    G     YR+FN+   
Sbjct: 369 SIAARFKSLQRLLNLVNSPQRIECFDISHIQGTSTVASCIVFDREGPRNADYRRFNIKG- 427

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD   +R  L RRF +                     +PD++++DGGKGQ++ A 
Sbjct: 428 -IIPGDDYGALRQALTRRFKK-----------------KEGIFPDLLVIDGGKGQINQAL 469

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHR 539
            VL+++ V    T++ IAKGP+R AG E  F+      +++    P L+ +Q +RDEAHR
Sbjct: 470 TVLEEIGVIET-TVLGIAKGPERKAGKETLFLAGYENPIMVTPDSPALHLLQHIRDEAHR 528

Query: 540 FAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI  HRKRR +    S L+EI G+GP R+R LL   G ++ I R+  E LA I+GI+  
Sbjct: 529 FAIINHRKRRARGGKLSRLEEIPGLGPKRRRKLLIQLGGLQEIMRAGVEDLAQIKGINLV 588

Query: 599 IACKIYNHFHK 609
           +A +IY+  H+
Sbjct: 589 LAQRIYDILHR 599


>gi|268592485|ref|ZP_06126706.1| excinuclease ABC subunit C [Providencia rettgeri DSM 1131]
 gi|291311889|gb|EFE52342.1| excinuclease ABC subunit C [Providencia rettgeri DSM 1131]
          Length = 610

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/619 (34%), Positives = 331/619 (53%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY   N  + +   ++ QI +I  TV
Sbjct: 11  LKTVTNQPGVYRMYDAGETVIYVGKAKDLKKRLASYFRENVGSRKTEQLVKQIASIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PY+ ++     P +  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYLFLS-SETHPRISMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF S  AV +T+  +Q+ F +R C DS++R+R+RPCL +QI RC GPC    +S E Y 
Sbjct: 130 GPFPSSYAVRETLALMQKLFPIRQCEDSMYRNRSRPCLQYQIGRCLGPCVKGLVSDEDYN 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
           + V   + FL+G +  +   +   M +A+L+  +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLTGKDKQVLAGLVDRMEKASLELRFEDAARFRDQIQAVRAVTEEQYVSGDS 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
           + +D   +     LAC+   F   G+  G+ ++F K  +++   +++  FL QFY     
Sbjct: 250 DDLDVIGVSFESGLACVHVLFIRQGKVLGSRSYFPKIPADTQLEEVVQTFLGQFYLQGSE 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           ++  P  ILL     E  LL  S  +  G K+ I    +G + + ++ A  NA  + + K
Sbjct: 310 NRTLPGEILLDFALTEKELLAESLSEIAGRKIHIQSQPRGVRARYLKLARTNASIALSTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+   + Q  ++   K   L     R+E +D SH MG   V   VV  ++G VK++YR++
Sbjct: 370 LAQHSTVQQRMEALAKVVNLE-NINRMECFDISHTMGEQTVASCVVFDKSGPVKSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I   +                PD++ +DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMHQVLTRRYGKHIDESK---------------VPDIIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V   L V+       +I +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LGQARDVFNSLEVDWDKKHPLLIGVAKGSDRKAGLETLFLKPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHNHAITGHRQRRAKVKSTSALESIEGVGPKRRQMLLKYMGGLQPLRNASIEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            +  IS  +A KIYN   +
Sbjct: 592 KVPSISYALAEKIYNALKQ 610


>gi|204931075|ref|ZP_03221901.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320119|gb|EDZ05324.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 610

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALVTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|157375591|ref|YP_001474191.1| excinuclease ABC subunit C [Shewanella sediminis HAW-EB3]
 gi|189038096|sp|A8FW40|UVRC_SHESH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157317965|gb|ABV37063.1| excinuclease ABC, C subunit [Shewanella sediminis HAW-EB3]
          Length = 609

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 207/616 (33%), Positives = 331/616 (53%), Gaps = 28/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY   N    +   ++S I NI  TV
Sbjct: 11  LKTVSSSPGVYRMYDEEGTVIYVGKAKDLKKRLSSYFRVNLPNVKTQALVSHIANIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E +AL+LE + IK+  PR+N+LLRDDKS+PYIL++  HK P L  HR     +GSYF
Sbjct: 71  THSETDALILENDYIKQYMPRYNVLLRDDKSYPYILLS-DHKHPRLAYHRGPKRDKGSYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV ++++ LQ+ F +R C D  ++ R+RPCL +QI RCS PC  ++S E+Y  
Sbjct: 130 GPYPNGGAVRESLHLLQKIFPIRQCDDLYYKSRSRPCLQYQIGRCSAPCVNKVSDEEYAV 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240
            V  A  FL G +  +  ++   M  + L  +YE A  +RD++AAL  +    +      
Sbjct: 190 QVKLASLFLKGKDLQVMTELVSKMEASALALEYEQAASYRDQIAALRRVAEQQEVSNTSG 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296
            MD    Y+   +AC    F   G+  G+ +++    +E+   ++LS F+ QFY +    
Sbjct: 250 DMDVIGAYYASGVACFHLLFIREGKIFGSRSYYPSVPAETELDEVLSAFMIQFYLNSDSQ 309

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P+ ILLS   ++   LE +       KV+I    + E+   +  A+ NA  +   +L
Sbjct: 310 RTVPKEILLSHGFDDLPELERAIQTALEKKVEIKTNVRSERANFLRLAVTNATNAVNTRL 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +       +   +  + +R+E +D SH MG S V   VV    G  K  YR++N
Sbjct: 370 SHKNTVEQRFLLLEEALEVSTLIQRMECFDISHTMGESTVASCVVFDREGPNKADYRRYN 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  N +   DD A M+  + RRF ++ KN +                PD++ +DGG GQL
Sbjct: 430 I--NGITPGDDYAAMKQAITRRFDKIDKNGK---------------IPDLLFIDGGTGQL 472

Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533
             AQ ++ +  ++++    +I +AKG  R  G+E     + E +  +      L+ IQ +
Sbjct: 473 RIAQKIVDEKFVDIDKTPMLIGVAKGEGRKPGLETLIYGENEQSFTIPADSGALHLIQHI 532

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR +R+K    S L+ I G+GP R++ LLQ  G ++ +  +S   LA +
Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQYLGGIQEVKGASVAELAKV 592

Query: 593 EGISKKIACKIYNHFH 608
            GIS ++A  I++   
Sbjct: 593 PGISLEMAQTIHDSLR 608


>gi|161613493|ref|YP_001587458.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|189038085|sp|A9MU69|UVRC_SALPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|161362857|gb|ABX66625.1| hypothetical protein SPAB_01210 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 610

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLSMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|56413139|ref|YP_150214.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362065|ref|YP_002141702.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81360622|sp|Q5PI10|UVRC_SALPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229557862|sp|B5BGC1|UVRC_SALPK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56127396|gb|AAV76902.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093542|emb|CAR59004.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 610

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 211/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHCPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|212635585|ref|YP_002312110.1| excinuclease ABC subunit C [Shewanella piezotolerans WP3]
 gi|226732393|sp|B8CPE7|UVRC_SHEPW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|212557069|gb|ACJ29523.1| Excinuclease ABC, C subunit [Shewanella piezotolerans WP3]
          Length = 609

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 202/616 (32%), Positives = 331/616 (53%), Gaps = 28/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D+   V+YVGKA +L+KR+ SY   N    +   ++++I NI  T+
Sbjct: 11  LKTVTSSPGVYRMYDVDNIVIYVGKAKDLKKRLSSYFRKNLTNVKTQALVARIANIDVTI 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E +AL+LE + IK+  P++N+LLRDDKS+PYIL+++ HK P L  HR     +G YF
Sbjct: 71  THSETDALILENDYIKQYMPKYNVLLRDDKSYPYILLSN-HKHPRLSYHRGPKRAKGQYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV ++++ LQ+ F +R C D  ++ R+RPCL +QI RCS PC   +S + Y E
Sbjct: 130 GPYPNGGAVRESLHLLQKIFPIRQCDDLYYKARSRPCLQYQIGRCSAPCVDNVSLKDYQE 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            V  A  FL G +  + + +   M QA ++ +YE A  +RD++ AL  +    +  +   
Sbjct: 190 QVALASLFLKGKDQQVTKALVAKMEQAAVELNYEQAARYRDQITALRRVAEQQEVSHSSG 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC- 299
            MD    +    +AC    F   G+  G+ +++ K   ++  +++L  F+ QFY +    
Sbjct: 250 DMDVIGAHFASGVACFHLLFIREGKIFGSRSYYPKVPVDTELSEVLRAFMFQFYLNSDSQ 309

Query: 300 ---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ IL+S+  EE + L  +       KV+I    +GE+ + +  AL NA  +   +L
Sbjct: 310 RVTPKEILVSDAFEEQAELAGAINTAQQRKVEIKSQVRGERAQFLRLALTNATNAVNTRL 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           +   + +       +   + H  +R+E +D SH MG S V   VV    G  K  YR++N
Sbjct: 370 AHRNTVEQRFLLLEEAIEVSHKIQRMECFDISHTMGESTVSSCVVFNREGPNKADYRRYN 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M+  + RRF ++ K  +                PD++ +DGG GQL
Sbjct: 430 IEG--ITPGDDYAAMKQAISRRFDKVAKAGKT---------------PDILFIDGGIGQL 472

Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRL 533
             AQ V+ +  + +++  T+I +AKG  R  G+E     + E    L      L+ IQ++
Sbjct: 473 RIAQKVVDEKFVALDHAPTLIGVAKGEGRKPGLETLIYGENEESFTLPADSGALHLIQQI 532

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR +R+K    S L+ I G+GP R++ LLQ  G ++ +  +S   L  +
Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIEGVGPKRRKALLQHLGGLQEVKSASVTELVKV 592

Query: 593 EGISKKIACKIYNHFH 608
            GIS ++A  I++   
Sbjct: 593 PGISLEMAQTIHDALR 608


>gi|262043445|ref|ZP_06016568.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039187|gb|EEW40335.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 610

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 208/618 (33%), Positives = 335/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++ I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FL+G +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLAGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLGDKTLLADSLSELAGRRINVQTKPRGDRARYLKLARTNAATALTTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L+       LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTIHQRLQALASVLELPAVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDNK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNVENR---ITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L++        ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDIPWDKYHPLLLGVAKGSDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI+ HRK+R K    S L+ I G+GP R+++LL+  G ++ + ++S E +A
Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQGLQQASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI+    
Sbjct: 592 KVPGISHALAEKIFYSLK 609


>gi|110834166|ref|YP_693025.1| excinuclease ABC subunit C [Alcanivorax borkumensis SK2]
 gi|119367621|sp|Q0VPZ5|UVRC_ALCBS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|110647277|emb|CAL16753.1| excinuclease ABC, C subunit [Alcanivorax borkumensis SK2]
          Length = 607

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 216/609 (35%), Positives = 329/609 (54%), Gaps = 23/609 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+MLD  G VLYVGKA NLQ R+ SY   N  + +   ++ +I +I+ TVT +EV
Sbjct: 15  RKPGVYRMLDAEGGVLYVGKARNLQARLNSYFQKNVASVKTRALVGRIRDIQTTVTGSEV 74

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE ++IK LKP +NILLRDDKS+PYI IT   + P +  HR +      YFGP+ S
Sbjct: 75  EALLLEQSLIKELKPPYNILLRDDKSYPYIRITRSDRFPRVTFHRGTRRAGSQYFGPYPS 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV + ++ +++ F +R+C+DS FR+RTRPCL  QI RC+ PC G +S E Y   V  A
Sbjct: 135 GSAVREALSLIEKIFQVRNCSDSYFRNRTRPCLQHQINRCTAPCVGLVSEEDYARQVTMA 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCF 245
             FL G +  + ++++ +M  A    ++E A + RD+LAA+  +Q    +   +   D  
Sbjct: 195 ADFLDGRSREVADQLSTDMEAAAAALEFEKAALLRDQLAAIQAVQQKQYAETGQGDLDVV 254

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPE 301
           ++     LA I+      G+  G  TF   T  E   ++IL  FL Q+Y     D   P+
Sbjct: 255 AIETRHGLAIIEVLMIRDGRILGHRTFRPDTRGEDDRSEILEAFLSQYYLGDREDPVKPQ 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILL  E      L+ +  +Q+  KV++    + ++   I  A  NA +S   +++    
Sbjct: 315 EILLCMEIPGAEALQQALEEQWAKKVRLAWRVRSDRAAWISMAQTNAQQSMATEMAAREH 374

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +                +RIE +D SH  G  AV   VV  + G  K  YR FN++P  
Sbjct: 375 MEARFLALETLLESSEPIRRIECFDISHTQGEKAVASCVVFDQQGARKQDYRYFNVNPA- 433

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   +   + RR+ +++K +                 PD++++DGGKGQ+     
Sbjct: 434 -AGGDDYEALEEAIRRRYQRVLKEQ--------------GRMPDLLLIDGGKGQMQRGWK 478

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           V+++L++   I ++ I KGP R  G E  ++  G+ ++    D  L+ +Q++RDEAHRFA
Sbjct: 479 VVQELDLHASIRVMGIGKGPSRRPGFEALYLPCGKEMIPGPADSALHLLQQVRDEAHRFA 538

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           +T HR RR KA   S LDEI GIGP R++ LL  FG +K +  +S    A + GI+ ++A
Sbjct: 539 LTGHRARRGKARKQSTLDEIPGIGPKRRKALLTHFGGLKQMRNASASEFARVPGINSQMA 598

Query: 601 CKIYNHFHK 609
             +Y+ FH+
Sbjct: 599 QTLYDWFHR 607


>gi|320085436|emb|CBY95217.1| UvrABC system protein C Protein uvrC; Excinuclease ABC subunit C
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 610

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|167552827|ref|ZP_02346578.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322660|gb|EDZ10499.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 610

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALVTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|168239181|ref|ZP_02664239.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194738201|ref|YP_002114979.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|229557863|sp|B4TYW7|UVRC_SALSV RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194713703|gb|ACF92924.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288075|gb|EDY27462.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 610

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|85712392|ref|ZP_01043442.1| excinuclease ABC subunit C [Idiomarina baltica OS145]
 gi|85693835|gb|EAQ31783.1| excinuclease ABC subunit C [Idiomarina baltica OS145]
          Length = 605

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 204/612 (33%), Positives = 330/612 (53%), Gaps = 27/612 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D +G V+YVGKA +L+KR+ SY        +   ++ QI ++  TVT 
Sbjct: 13  HLTHQPGVYRMYDESGDVIYVGKAKDLRKRVSSYFREKVDRVKTQVLVKQIADMDVTVTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LE   IK+ +PR+N+LLRDDKS+PYI++T  H  P L  HR +   +G YFGP
Sbjct: 73  TEAEALILENTFIKKYRPRYNVLLRDDKSYPYIIMT-DHTHPRLGFHRGARRQKGEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +  AV +++  +Q+ F +R C D+ +R R+RPCL +Q+KRC  PC    + E+Y E V
Sbjct: 132 FPNGAAVRESLRLMQKLFPIRQCEDAYYRARSRPCLQYQLKRCLAPCVNVCTDEEYDEQV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242
             A++FL+G N  + +++   M  A+   D+E A  +RD++A L   Q  N        +
Sbjct: 192 QLARQFLNGKNQQVIDQLVTRMENASESLDFERAARYRDQIAMLRRTQERNSVTGAQEEL 251

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC--- 299
           D         +  +Q  F      +G+ ++F K  +++++ ++L  FL QFY ++     
Sbjct: 252 DVIGFARGNGVTTVQMLFIRDNHLQGSRSYFPKVPADTSDEEVLQAFLLQFYLNQSSGRK 311

Query: 300 -PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I+L +E +   +L     +  G KV++    +GE+++  + A  NA  +   KL+ 
Sbjct: 312 TPAEIVLPDEIKHDPVLGEVLGEAVGRKVRLLHNVRGERKQYQQLAKKNAVNALEGKLNQ 371

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           + +         +   L    +R+E +D SH MG   V   VV  +NG  K+ YR++N+ 
Sbjct: 372 QSTMNRRTSALQQVLELGIPIQRMECFDISHTMGQQTVASCVVFDQNGPKKSDYRRYNI- 430

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   DD A M   L +R+    +N                + PD++ +DGGKGQL+ 
Sbjct: 431 -TGITPGDDYAAMAKALAKRYDNAKEN---------------GNIPDILFIDGGKGQLAQ 474

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEA 537
           A+        ++   +I +AKG  R  G+E   +    E + LN     L+ IQ +RDE+
Sbjct: 475 AENYFADWG-KDAPMLIGVAKGESRKPGLETLIMAGSHETIPLNKDASALHLIQHIRDES 533

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR++R K    S L+EI GIG  R++ +L++ G ++ +  +S + LA++ GIS
Sbjct: 534 HRFAITGHRQKRNKVKRTSSLEEIEGIGAKRRQKILKNLGGLQEVKNASIDQLANVPGIS 593

Query: 597 KKIACKIYNHFH 608
           + +A KIY  F 
Sbjct: 594 RALAEKIYYSFR 605


>gi|309789332|ref|ZP_07683922.1| excinuclease ABC, C subunit [Shigella dysenteriae 1617]
 gi|308922726|gb|EFP68243.1| excinuclease ABC, C subunit [Shigella dysenteriae 1617]
          Length = 610

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 213/614 (34%), Positives = 337/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            ++GIS+ +A KI+
Sbjct: 592 KVQGISQGLAEKIF 605


>gi|167993514|ref|ZP_02574608.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168462516|ref|ZP_02696447.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194445436|ref|YP_002041212.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194471853|ref|ZP_03077837.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197265516|ref|ZP_03165590.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|229557861|sp|B4SW54|UVRC_SALNS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194404099|gb|ACF64321.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194458217|gb|EDX47056.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|195634256|gb|EDX52608.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197243771|gb|EDY26391.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205328434|gb|EDZ15198.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247111|emb|CBG24934.1| Excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993932|gb|ACY88817.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158461|emb|CBW17971.1| UvrABC system protein C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|321224588|gb|EFX49651.1| Excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130225|gb|ADX17655.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332988835|gb|AEF07818.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 610

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|206576376|ref|YP_002237712.1| excinuclease ABC, C subunit [Klebsiella pneumoniae 342]
 gi|290508772|ref|ZP_06548143.1| excinuclease ABC, C subunit [Klebsiella sp. 1_1_55]
 gi|226698354|sp|B5XPW9|UVRC_KLEP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|206565434|gb|ACI07210.1| excinuclease ABC, C subunit [Klebsiella pneumoniae 342]
 gi|289778166|gb|EFD86163.1| excinuclease ABC, C subunit [Klebsiella sp. 1_1_55]
          Length = 610

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 208/618 (33%), Positives = 335/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++ I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FL+G +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLAGKDDQVLTQLIARMEKASQSLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +     +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFEAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFSLGDKTLLAESLSELAGRRINVQTKPRGDRARYLKLARTNAATALTTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+ + +    L+       LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LAQQSTIHQRLQALATVLELPAVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I   +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDENK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHHPLLLGVAKGSDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI+ HRK+R K    S L+ I G+GP R+++LL+  G ++ + ++S E +A
Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQGLQQASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI+    
Sbjct: 592 KVPGISHGLAEKIFYSLK 609


>gi|205352358|ref|YP_002226159.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|226698794|sp|B5R896|UVRC_SALG2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|205272139|emb|CAR36992.1| UvrABC system protein C [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627409|gb|EGE33752.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 610

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G  + +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRSIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLEILFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|200390430|ref|ZP_03217041.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199602875|gb|EDZ01421.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 610

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSEFAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGTDRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|62180519|ref|YP_216936.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224583553|ref|YP_002637351.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912481|ref|ZP_04656318.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|75482712|sp|Q57N56|UVRC_SALCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764942|sp|C0Q2A7|UVRC_SALPC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|62128152|gb|AAX65855.1| UvrC with UvrAB is a DNA excision repair enzyme [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224468080|gb|ACN45910.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714995|gb|EFZ06566.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 610

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|16765284|ref|NP_460899.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|20141853|sp|O66041|UVRC_SALTY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|16420480|gb|AAL20858.1| UvrC [Salmonella enterica subsp. enterica serovar Typhimurium str.
           LT2]
 gi|312912936|dbj|BAJ36910.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 610

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLSALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|198244405|ref|YP_002215140.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|226698792|sp|B5FRY5|UVRC_SALDC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|197938921|gb|ACH76254.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 610

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|294636768|ref|ZP_06715107.1| excinuclease ABC subunit C [Edwardsiella tarda ATCC 23685]
 gi|291090027|gb|EFE22588.1| excinuclease ABC subunit C [Edwardsiella tarda ATCC 23685]
          Length = 610

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/619 (34%), Positives = 337/619 (54%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +  G V+YVGKA +L+KR+ SY      + +   ++ QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYEAGGEVIYVGKAKDLKKRLSSYFRRQLASRKTEALVRQIAHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++   + P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIYLS-AERHPRLTVHRGAKRARGDYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C DSV+R+R+RPCL +QI+RC GPC    +S  +Y 
Sbjct: 130 GPFPNASAVRETLALLQKLFPIRQCEDSVYRNRSRPCLQYQIQRCLGPCVAGLVSDAEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
             V   + FLSG +  + + +   M +A+    +E A   RD++ A+  +         +
Sbjct: 190 RQVDYVRLFLSGKDSQVVDALVARMEEASRALRFEEAARLRDQIQAVRRVTERQFISGDH 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +     +AC+   F   GQ  G+ ++F +  + +  A+++  F+ QFY     
Sbjct: 250 DDIDVVGVAFEAGMACVHVLFIRQGQVLGSRSYFPRVPAGTELAEVVQTFIGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  IL+     E  LL  S  +  G ++ I    +G++ + ++ A  NA  + + K
Sbjct: 310 TRTLPGEILIDFALPERQLLAESISELAGRRIHIQSQPRGDRARYLKLARTNAATALSSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L    +        +R+E +D SH +G   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTILQRLVQLEQVLQ-RADIQRMECFDISHTLGEETVASCVVFDRNGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A MR VL RR+ + + +E+                PDV+ +DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMRQVLRRRYGKALNDEK---------------IPDVIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   + R  ++ IAKG  R AG+E  FFV  GE   L    P L+ IQ
Sbjct: 472 LAQAKEVFAELDVPWDKTRPLLLGIAKGSDRKAGLETLFFVPHGEGFSLAPDSPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI+ HRK+R K    S L+ I GIGP R++ LL+  G ++ +  +S + +A
Sbjct: 532 HIRDESHNHAISGHRKKRAKVRNTSALESIEGIGPKRRQQLLKYMGGMQSLRDASVDEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A KI+    +
Sbjct: 592 KVPGISAALAEKIHYALKQ 610


>gi|197248145|ref|YP_002146077.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|226698355|sp|B5F2U1|UVRC_SALA4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|197211848|gb|ACH49245.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 610

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 211/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|296535210|ref|ZP_06897426.1| excision endonuclease subunit UvrC [Roseomonas cervicalis ATCC
           49957]
 gi|296264462|gb|EFH10871.1| excision endonuclease subunit UvrC [Roseomonas cervicalis ATCC
           49957]
          Length = 692

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 262/644 (40%), Positives = 363/644 (56%), Gaps = 44/644 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MP  PGVY+MLD  G  LYVGKA +L+KR+ +Y        R+  M+     +    T 
Sbjct: 41  TMPLSPGVYRMLDAKGEALYVGKARSLKKRVVAYTQLARLPERLRRMVHGTRRMEIITTG 100

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLEAN+IK+L+PRFNI+LRDDKS+P+++IT+ H  P + KHR       SY+GP
Sbjct: 101 SEAEALLLEANLIKKLRPRFNIVLRDDKSYPWLVITEDHAYPQIAKHRGEKRKGASYWGP 160

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV++T+ +LQ+ F LRSC D+VF  R RPCLL QIKRC+ PC G IS   Y   V
Sbjct: 161 FASAWAVDQTLTALQKVFLLRSCRDTVFDSRDRPCLLHQIKRCAAPCVGRISEADYAGLV 220

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
            +AKKFLSG   ++++ +A+ M QA    ++E A   RDR+  L+H+Q  N    +    
Sbjct: 221 RDAKKFLSGETPSIQKALAKEMEQAAESLEFERAAALRDRIRGLTHVQGQNAINLDGVGD 280

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES-TNAQILSYFLRQFYTDKPCP 300
            D  +L+     +C+Q  FF  G+N G  +FF     +     ++LS FL Q Y D P P
Sbjct: 281 ADVIALHQIAGQSCVQVFFFRGGRNNGNRSFFPSHLKDDAEPEEVLSAFLTQLYDDLPPP 340

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             +LLS    +  L+  +   + G KV++  P++GEKR+ +E A  NA  +  ++L+   
Sbjct: 341 PLVLLSHALPDAGLIAEALALKAGRKVELHAPQRGEKRQAVEHAATNAREALERRLAEGT 400

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   +L+   K F LP  P+RIEIYDNSHI G  A G MVV G  GF+KN YRK+ +   
Sbjct: 401 AQVALLEGVAKLFDLPEPPRRIEIYDNSHIQGSHAYGVMVVAGPEGFMKNAYRKYAIQGA 460

Query: 421 DVK-----------------------------TQDDCAMMRMVLERRFSQLIKNEENLNF 451
                                             DD AMMR V ERRF + +K +     
Sbjct: 461 AAPRIPAPVAAEVPGALKETRAAGGGDRIASGGGDDFAMMREVFERRFGRALKEDPERQG 520

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
                      WPD+V++DGG GQLSAA+ V+ +L +   + ++++AKGP R AG E F 
Sbjct: 521 EG---------WPDLVLIDGGAGQLSAAREVMAELGL-GDLNLVAVAKGPDRDAGREWFH 570

Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRL 570
                 L L  RDP+LY++QRLRDEAHRFAITTHR  R KA   S LDEI G+G   KR 
Sbjct: 571 RDGHPPLQLPPRDPVLYYLQRLRDEAHRFAITTHRAGRSKAITRSELDEIPGVGSAIKRR 630

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           LL  FG+ + + ++  + L +  GI   +A +I+ HFH   +  
Sbjct: 631 LLNHFGSARGVRQAGLDDLKNCPGIGPSMAVRIHEHFHPGAAGA 674


>gi|326382177|ref|ZP_08203869.1| excinuclease ABC subunit C [Gordonia neofelifaecis NRRL B-59395]
 gi|326198907|gb|EGD56089.1| excinuclease ABC subunit C [Gordonia neofelifaecis NRRL B-59395]
          Length = 681

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 183/645 (28%), Positives = 303/645 (46%), Gaps = 45/645 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L++R+ SY         R   M++   ++ +TV 
Sbjct: 13  TIPTDPGVYKFRDQHGRVIYVGKAKSLRQRLTSYFADITGLHPRTRQMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P + +T   + P ++ +R +      YFG
Sbjct: 73  GTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPMLAVTMNEEYPRVFVYRGARRPGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F +R+C+  VFR      RPCLL  I +CS PC G +S+ ++
Sbjct: 133 PYAHAWAIRETVDLLTRVFGVRTCSKGVFRRSEQMGRPCLLGYIDKCSAPCVGRVSAAEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V +   FL+G    L  K+ R M+ A  + D+E A   RD ++AL         +  
Sbjct: 193 RAIVEDFCDFLAGRTDGLIRKLEREMSDAAEELDFERAARLRDDVSALRRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++  ++    ++      G+ RG   + ++    ++ +  +  FL QFY D+
Sbjct: 253 SGTDADVIAMVGDELECSVKVFHVRDGRVRGERGWVVEVQENASLSDQVGTFLTQFYGDE 312

Query: 298 P-----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+    ++   +E     + G  V + VP++G+KR ++     NA  + 
Sbjct: 313 TDMSSGIPREVLVPALPDDAPDVEKWLAGRRGAHVSLRVPQRGDKRTLMTTVERNATEAL 372

Query: 353 TQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
            +          +    L +      L   P RIE  D SH+ G   V  +VV  +    
Sbjct: 373 ARHKLQRAGDLTTRSAALTELQDALGLDVAPLRIECIDISHVQGTDVVASLVVFEDGLAR 432

Query: 409 KNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIK---------------------NE 446
           K+ YR +++       + DD A +  V  RRF +                          
Sbjct: 433 KSDYRHYSIKEAAGDGRSDDVASIAEVTRRRFLRHRDGAAAPPPEDTVQTGSADSGSGET 492

Query: 447 ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506
              +    ++   F   P++ ++DGG  Q  AA  VL +L V + + ++ +AK  +    
Sbjct: 493 APDDDATSRKAKKFAYPPNLFVVDGGAPQAHAAASVLDELGVTD-VAVVGLAKRLE---- 547

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565
            E +     E ++L      L+ +QR+RDEAHRFAIT HR +R K    S LD I G+G 
Sbjct: 548 -EVWIPGDDEPVILPRNSEALFLLQRVRDEAHRFAITFHRSKRSKRMTASALDGIAGLGA 606

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            R+  L+  FG+V  + +++ E +  ++GI    A  ++   + +
Sbjct: 607 GRRTALVTHFGSVAKLKQATVEEIGEVKGIGPATAQAVHEALNPD 651


>gi|297626681|ref|YP_003688444.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922446|emb|CBL57019.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 664

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 192/633 (30%), Positives = 314/633 (49%), Gaps = 31/633 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY H  +    R   M+    ++++TV 
Sbjct: 13  SIPTDPGVYRFSDEHGQVIYVGKAKNLRNRLNSYFHDISALHPRTQRMVRTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             E+E+L LE   IK+  PRFNI+ RDDK++P++ +T   + P +Y  R +      YFG
Sbjct: 73  QNELESLQLEYTWIKQYDPRFNIMYRDDKTYPWLCVTWSDEYPRVYVGRGAKRKGYRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    AV  T++ L R F +RSC+  VFR+     RPCLL  I +CS PC G +S+ ++
Sbjct: 133 PFGQAWAVRDTVDMLLRIFPMRSCSAGVFRNAQAARRPCLLGYIGKCSAPCVGRVSAAEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E   +   F  G    L+ K+ + M QA   E++E A + RD L AL      N  +  
Sbjct: 193 REIADDFCSFWEGRTRQLQHKLTKQMRQAAENEEFERAAVLRDSLGALDKATERNAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +   +     +Q      G+ RG  ++      ++  ++++  FL + Y+D 
Sbjct: 253 DGTDADAIAFALDPLELAVQVFHVRGGRIRGERSWIADRADDADESELVESFLLRLYSDS 312

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  IL+        +L     +Q G +V + VP++G+KR +++    NA  +  +  +
Sbjct: 313 RVPHEILVPVMPPTAPVLTEMLGEQRGGRVNLHVPQRGDKRVLLDTVAKNATEALDRHKA 372

Query: 358 TE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
                  +    L++      LP +P RIE YD SH+ G   VG MVV  +    +++YR
Sbjct: 373 KRAADLATRNQALEELQGALGLPEVPLRIEGYDISHLQGTQVVGSMVVFEDGLSRRSEYR 432

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF-----------HPKKQEYSFPS 462
           +F +     +  DD   M  VL RRFS+LI +   +                 +   F  
Sbjct: 433 RFVIKS--FEGSDDLRAMDEVLTRRFSRLINDRRAMEEASRQGGPGLIDPETGKPLKFAY 490

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            P +V++DGG  Q+ AAQ  +  L +   + +I +AK  +     E     +   L+L  
Sbjct: 491 APSLVVIDGGPLQVEAAQNAITALGLA-EVRVIGLAKRLE-----EVRLPDQDFPLILPR 544

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               LY +QR+RDE+HRFAIT HR+RR +A   S LD++ G+G +R++ +L  FG+++ +
Sbjct: 545 DSEGLYLLQRVRDESHRFAITHHRQRRSRAMVESVLDDVPGLGAVRRKTVLSHFGSLRKL 604

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             ++ + +A + G+    A  I +    +    
Sbjct: 605 RAATVDQIAELPGLGAATAQAIVDALRADQPGQ 637


>gi|283785658|ref|YP_003365523.1| UvrABC system protein C [Citrobacter rodentium ICC168]
 gi|282949112|emb|CBG88719.1| UvrABC system protein C [Citrobacter rodentium ICC168]
          Length = 610

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 335/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++ I+ I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIHQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLATHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+ +  +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQQLAFEEAARIRDQIQAVRRVTEKQFVSNSG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVSFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ I    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLSDSLSELAGRRIHIQTKPRGDRARYLKLARTNAATALTTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTIAQRLSALATVLNLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V  +L+V   ++   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LGQAKAVFAELDVSWDKSHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|207856539|ref|YP_002243190.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|226698793|sp|B5R110|UVRC_SALEP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|206708342|emb|CAR32645.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 610

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLEILFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|326330009|ref|ZP_08196323.1| excinuclease ABC subunit C [Nocardioidaceae bacterium Broad-1]
 gi|325952217|gb|EGD44243.1| excinuclease ABC subunit C [Nocardioidaceae bacterium Broad-1]
          Length = 666

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 189/632 (29%), Positives = 311/632 (49%), Gaps = 37/632 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL++R+ +Y     +   R   M++   ++ +
Sbjct: 18  KAGSIPTQPGVYRFRDPKGRVIYVGKAINLRQRLANYFQPIPSLHPRTATMVTTAASVEW 77

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T    ++EAL LE   IK   PRFN+  RDDKS+P++ +T   + P +   R +      
Sbjct: 78  TTVNNDIEALQLEYTWIKEFDPRFNVKYRDDKSYPWLAVTVSEEFPRVMVGRGAKRKGTR 137

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ L R F +RSC++ VF+      RPCLL  I +C+ PC G IS 
Sbjct: 138 YFGPYGHAWAIRETVDILLRVFPMRSCSNGVFKRSQQIGRPCLLGYIDKCTAPCVGNISP 197

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E V +   F++G      ++I + M  A+   D+E A   RD LAA+         
Sbjct: 198 EEHREIVDDFCDFMAGHTTTFTKRIEKEMYAASEALDFEKAARLRDDLAAMQRALEKQAV 257

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  +L  +     +Q  +   G+ +G   +      ++  A ++ +FL Q Y
Sbjct: 258 VLGDGADADVIALAEDPLEVGVQIFYVRGGRIKGQRGWVADRMDDADTAGLVEHFLLQLY 317

Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
             +     P  IL+     +   LE         KV+I VP++G+K+ + E    NA ++
Sbjct: 318 AGEDAEAIPREILVPALPPDHETLEELLSDVRKAKVRIRVPQRGDKKTLQETVAKNAEQA 377

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L  +P RIE YD SH+ G   V  MVV  +   
Sbjct: 378 LALHKTKRASDLTTRNRALEEIQEALELDEVPLRIECYDISHLQGTEIVASMVVFEDGLA 437

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN--------------LNFHP 453
            K++YR+F +        DD   M  V+ RRF +L+  +                L    
Sbjct: 438 RKSEYRRFIIKGQ--DGSDDVRAMHEVITRRFKRLLDEQSTSIVSTDVEGANGPMLVDPE 495

Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513
             +   F   P +V++DGG  Q++AAQ  L +L +++ I ++ +AK  +     E +   
Sbjct: 496 TGRPRKFAYAPGLVVVDGGAPQVAAAQRALAELGIDD-IPVVGLAKRLE-----EVWVPD 549

Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLL 572
           + + ++L      LY +QR+RDEAHRFAIT HR RR K+   S LD++ G+G +R++ L+
Sbjct: 550 EEDPVILPRSSEGLYLLQRVRDEAHRFAITHHRGRRSKSMVESLLDDVPGLGEVRRKTLM 609

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + FG++K +  ++ E +A + GI    A  I 
Sbjct: 610 KHFGSLKKLRAATAEEIALVPGIGPATATAIK 641


>gi|117920057|ref|YP_869249.1| excinuclease ABC subunit C [Shewanella sp. ANA-3]
 gi|189038095|sp|A0KVM4|UVRC_SHESA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|117612389|gb|ABK47843.1| Excinuclease ABC subunit C [Shewanella sp. ANA-3]
          Length = 609

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 200/611 (32%), Positives = 327/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+ G V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 16  SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIHHIDVTLTHSET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYI ++ +H+ P L  HR     +G YFGP+ +
Sbjct: 76  DALLLENDYIKQYMPKYNVLLRDDKSYPYIFLS-QHEHPRLAYHRGPQREKGYYFGPYPN 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ RTRPCL +Q+ RCS PC G++S+ +Y E V  A
Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCVGKVSNAEYDEQVKLA 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +  ++   M +A  ++ YE A   RD++ AL  +    +   N   MD  
Sbjct: 195 SLFLKGKDKQVISELVAKMEEAAGQQAYEQAARFRDQIMALRRVAEQQEVSGNTGDMDVI 254

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            +++   +AC    F   G+  G+ +++    +++   ++L  FL QFY +    +  P+
Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLLQFYLNADIQRTIPK 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +  +    K  I    + ++   +  AL NA  +   +LS + +
Sbjct: 315 EVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLALTNATNAVMTRLSHKNT 374

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L    +R+E +D SH MG S V   VV    G  K +YR++N+    
Sbjct: 375 VEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGPHKAEYRRYNIEG-- 432

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++                +    PD++ +DGG GQL  AQ 
Sbjct: 433 ITPGDDYAAMKQAISRRFDKI---------------DASGKIPDILFIDGGLGQLRIAQQ 477

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  +N++    +I +AKG  R  G+E       E +  L    P L+ IQ +RDE+H
Sbjct: 478 IVDEKFVNLDKAPQLIGVAKGESRKPGLETLIFGDTETSFSLEDDSPALHLIQHIRDESH 537

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   LA + GIS 
Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPGISI 597

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 598 EMAQTIHDALR 608


>gi|322616940|gb|EFY13848.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618180|gb|EFY15072.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625850|gb|EFY22669.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626302|gb|EFY23112.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632717|gb|EFY29462.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639059|gb|EFY35752.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640500|gb|EFY37153.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645991|gb|EFY42508.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649888|gb|EFY46309.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655496|gb|EFY51804.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660274|gb|EFY56512.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662955|gb|EFY59162.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668140|gb|EFY64299.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674100|gb|EFY70194.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675547|gb|EFY71621.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683041|gb|EFY79057.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686735|gb|EFY82713.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195376|gb|EFZ80556.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199267|gb|EFZ84362.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204432|gb|EFZ89438.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207522|gb|EFZ92470.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211847|gb|EFZ96678.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217507|gb|EGA02226.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223585|gb|EGA07900.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231529|gb|EGA15642.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235972|gb|EGA20051.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240542|gb|EGA24585.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245434|gb|EGA29434.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250204|gb|EGA34096.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323255488|gb|EGA39249.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262085|gb|EGA45648.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266208|gb|EGA49698.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270683|gb|EGA54124.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 610

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 336/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEVLVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|24373426|ref|NP_717469.1| excinuclease ABC subunit C [Shewanella oneidensis MR-1]
 gi|32130299|sp|Q8EFV4|UVRC_SHEON RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|24347704|gb|AAN54913.1|AE015629_7 excinuclease ABC, C subunit [Shewanella oneidensis MR-1]
          Length = 609

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 200/614 (32%), Positives = 329/614 (53%), Gaps = 28/614 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+M D+ G V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T 
Sbjct: 13  TVTSSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIHHIDVTLTH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE + IK+  P++N+LLRDDKS+PYIL++ +H+ P L  HR     +G YFGP
Sbjct: 73  SETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  AV ++++ +Q+ F +R C D  ++ RTRPCL +Q+ RCS PC G++S+ +Y E V
Sbjct: 132 YPNGGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCVGKVSNAEYDEQV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  +  ++   M +A  ++ YE A   RD++ AL  +    +   N   M
Sbjct: 192 KLASLFLKGKDKQVISELVAKMEEAAEQQAYEQAARFRDQIMALRRVAEQQEVSGNTGDM 251

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KP 298
           D   +++   +AC    F   G+  G+ +++    +++   ++L  FL QFY +    + 
Sbjct: 252 DVIGVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLLQFYLNADIQRT 311

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ +++S   EE   LE +  +    K  I    + ++   +  A+ NA  +   +LS 
Sbjct: 312 IPKEVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLAITNATNAVMTRLSH 371

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           + + +       +   L    +R+E +D SH MG S V   VV    G  K +YR++N+ 
Sbjct: 372 KNTVEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGPHKAEYRRYNIE 431

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   DD A M+  + RRF ++                +    PD++ +DGG GQL  
Sbjct: 432 G--ITPGDDYAAMKQAISRRFDKI---------------DASGKIPDILFIDGGLGQLRI 474

Query: 479 AQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535
           AQ ++ +  +N++    +I +AKG  R  G+E       E +  L    P L+ IQ +RD
Sbjct: 475 AQQIVDEKFVNLDKAPQLIGVAKGESRKPGLETLIFGDTETSFSLEDDSPALHLIQHIRD 534

Query: 536 EAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+HRFAIT HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   LA + G
Sbjct: 535 ESHRFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPG 594

Query: 595 ISKKIACKIYNHFH 608
           IS ++A  I++   
Sbjct: 595 ISIEMAQTIHDALR 608


>gi|294994982|ref|ZP_06800673.1| excinuclease ABC subunit C [Mycobacterium tuberculosis 210]
 gi|326903041|gb|EGE49974.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis W-148]
          Length = 646

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 184/638 (28%), Positives = 306/638 (47%), Gaps = 34/638 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   +++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G + + ++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVDAAQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG        + + MN A  + D+E A   RD L+AL         +  
Sbjct: 193 RQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQFY- 294
                D  +   ++  A +Q      G+ RG   + ++   E   +  Q++  FL QFY 
Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIIEKPGEPGDSGIQLVEQFLTQFYG 312

Query: 295 -----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
                      +  P P  +L+         L        G +V + VP++G+KR + E 
Sbjct: 313 DQAALDDAADESANPVPREVLVPCLPSNAEELASWLSGLRGSRVVLRVPRRGDKRALAET 372

Query: 344 ALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
              NA  +  Q      S        L+       L   P RIE  D SH+ G   VG +
Sbjct: 373 VHRNAEDALQQHKLKRASDFNARSAALQSIQDSLGLADAPLRIECVDVSHVQGTDVVGSL 432

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQE 457
           V   +    K+ YR F +     + + DD A +  V  RRF + ++++ + +   P+++ 
Sbjct: 433 VAFEDGLPRKSDYRHFGIREAAGQGRSDDVACIAEVTRRRFLRHLRDQSDPDLLSPERKS 492

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
             F   P++ ++DGG  Q++AA  V+ +L V + + +I +AK  +     E +   + + 
Sbjct: 493 RRFAYPPNLYVVDGGAPQVNAASAVIDELGVTD-VAVIGLAKRLE-----EVWVPSEPDP 546

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFG 576
           +++      LY +QR+RDEAHRFAIT HR +R  +   S LD + G+G  R++ L+  FG
Sbjct: 547 IIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSTRMTASALDSVPGLGEHRRKALVTHFG 606

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           ++  +  ++ + + ++ GI    A  +++    ++S  
Sbjct: 607 SIARLKEATVDEITAVPGIGVATATAVHDALRPDSSGA 644


>gi|113969890|ref|YP_733683.1| excinuclease ABC subunit C [Shewanella sp. MR-4]
 gi|119367835|sp|Q0HJZ1|UVRC_SHESM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|113884574|gb|ABI38626.1| Excinuclease ABC subunit C [Shewanella sp. MR-4]
          Length = 609

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 200/611 (32%), Positives = 327/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+ G V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 16  SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIHHIDVTLTHSET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYI ++ +H+ P L  HR     +G YFGP+ +
Sbjct: 76  DALLLENDYIKQYMPKYNVLLRDDKSYPYIFLS-QHEHPRLAYHRGPQREKGYYFGPYPN 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ RTRPCL +Q+ RCS PC G++S+ +Y E V  A
Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCVGKVSNAEYDEQVKLA 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +  ++   M +A  ++ YE A   RD++ AL  +    +   N   MD  
Sbjct: 195 SLFLKGKDKQVISELVAKMEEAAEQQAYEQAARFRDQIMALRRVAEQQEVSGNTGDMDVI 254

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            +++   +AC    F   G+  G+ +++    +++   ++L  FL QFY +    +  P+
Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLLQFYLNADIQRTIPK 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +  +    K  I    + ++   +  AL NA  +   +LS + +
Sbjct: 315 EVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLALTNATNAVMTRLSHKNT 374

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L    +R+E +D SH MG S V   VV    G  K +YR++N+    
Sbjct: 375 VEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGPHKAEYRRYNIEG-- 432

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++                +    PD++ +DGG GQL  AQ 
Sbjct: 433 ITPGDDYAAMKQAISRRFDKI---------------DASGKIPDILFIDGGLGQLRIAQQ 477

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  +N++    +I +AKG  R  G+E       E +  L    P L+ IQ +RDE+H
Sbjct: 478 IVDEKFVNLDKAPQLIGVAKGESRKPGLETLIFGDTESSFSLEDDSPALHLIQHIRDESH 537

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   LA + GIS 
Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPGISI 597

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 598 EMAQTIHDALR 608


>gi|300741444|ref|ZP_07071465.1| excinuclease ABC subunit C [Rothia dentocariosa M567]
 gi|300380629|gb|EFJ77191.1| excinuclease ABC subunit C [Rothia dentocariosa M567]
          Length = 657

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 200/652 (30%), Positives = 322/652 (49%), Gaps = 52/652 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ SY       + +   M+    ++ +TV 
Sbjct: 13  DIPTHPGVYRFRDSHGRVIYVGKAKNLRNRLSSYFVAPERLSPKTYAMVHTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+E+L LE   IK  KPRFNI  RDDKS+PY+ +T + K P     R        YFG
Sbjct: 73  GSELESLQLEYTWIKEYKPRFNIAFRDDKSYPYLAVTMRDKFPRAQIMRGDRKKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           P++ V A+ +T+++L R F +R+C+  VF+      RPCLL  I +C+ PC G +S E++
Sbjct: 133 PYSQVWAIRETLDALLRVFPVRTCSAGVFKRAEASGRPCLLGYIDKCAAPCVGRVSPEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E      +F++GG      ++ R M +A    D+E A + RD + AL+     N  + +
Sbjct: 193 RELADGLCRFMAGGAEKFITQLTRRMKEAAADMDFERAAVLRDDITALTKAFERNAVVLS 252

Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D F+   ++  A +Q  F   G+ RG   + ++  ++    +++   L Q Y   
Sbjct: 253 DSVDADLFAFAQDELEASVQVFFVRGGRIRGQRGWIVEKVNDGGETELIEQLLVQVYGEM 312

Query: 295 ------------------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336
                             T    P  IL+    E T  L+       G KV I VP++G+
Sbjct: 313 AANIASAAAFDEDSGLDATQHEIPRQILVPTMPENTQQLQEWLSGVRGAKVDIAVPQRGD 372

Query: 337 KRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392
           K  +++    NA  S T   S       +    L +  +   LP    RIE YD SH+ G
Sbjct: 373 KAALMKTVAENAQHSLTLHKSRRAGDITTRSASLVELQEVLELPDPLMRIECYDISHVQG 432

Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452
            + V  MVV  +    K+ YRKF++  +    +DD A M  V+ RRF + +  ++     
Sbjct: 433 TNVVASMVVFEDGMPTKSAYRKFSITGD--AARDDTASMYDVITRRFKRYLAEQQQRAEA 490

Query: 453 P-----------KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501
           P            ++   F   P++V++DGG  Q++AAQ  L  L +E+ I ++ IAK  
Sbjct: 491 PLSSGEVTADSSAQEPAKFAYPPNLVLVDGGPPQVAAAQSALSNLGIED-IYVVGIAKRL 549

Query: 502 KRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEI 560
           +     E +       ++L      LY +QR+RDEAHRFAIT HR +R KA   S LD +
Sbjct: 550 E-----ELWLPDDDFPVILPRTSEALYLVQRIRDEAHRFAITFHRAKRGKAMVASALDSV 604

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            G+G +++  L++ FG+V  +  +S + L  + G+   +A K+++H ++  +
Sbjct: 605 PGLGSVKRAALIKHFGSVAKVRNASIKELQQVSGVGPALAQKVHDHLNQKET 656


>gi|215411066|ref|ZP_03419874.1| excinuclease ABC subunit C [Mycobacterium tuberculosis 94_M4241A]
 gi|298524925|ref|ZP_07012334.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298494719|gb|EFI30013.1| excinuclease ABC (subunit C-nuclease) uvrC [Mycobacterium
           tuberculosis 94_M4241A]
          Length = 646

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 184/638 (28%), Positives = 306/638 (47%), Gaps = 34/638 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   +++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G + + ++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVDAAQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG        + + MN A  + D+E A   RD L+AL         +  
Sbjct: 193 RQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQFY- 294
                D  +   ++  A +Q      G+ RG   + ++   E   +  Q++  FL QFY 
Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKPGEPGDSGIQLVEQFLTQFYG 312

Query: 295 -----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
                      +  P P  +L+         L        G +V + VP++G+KR + E 
Sbjct: 313 DQAALDDAADESANPVPREVLVPCLPSNAEELASWLSGLRGSRVVLRVPRRGDKRALAET 372

Query: 344 ALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
              NA  +  Q      S        L+       L   P RIE  D SH+ G   VG +
Sbjct: 373 VHRNAEDALQQHKLKRASDFNARSAALQSIQDSLGLADAPLRIECVDVSHVQGTDVVGSL 432

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQE 457
           V   +    K+ YR F +     + + DD A +  V  RRF + ++++ + +   P+++ 
Sbjct: 433 VAFEDGLPRKSDYRHFGIREAAGQGRSDDVACIAEVTRRRFLRHLRDQSDPDLLSPERKS 492

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
             F   P++ ++DGG  Q++AA  V+ +L V + + +I +AK  +     E +   + + 
Sbjct: 493 RRFAYPPNLYVVDGGAPQVNAASAVIDELGVTD-VAVIGLAKRLE-----EVWVPSEPDP 546

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFG 576
           +++      LY +QR+RDEAHRFAIT HR +R  +   S LD + G+G  R++ L+  FG
Sbjct: 547 IIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSTRMTASALDSVPGLGEHRRKALVTHFG 606

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           ++  +  ++ + + ++ GI    A  +++    ++S  
Sbjct: 607 SIARLKEATVDEITAVPGIGVATATAVHDALRPDSSGA 644


>gi|29832833|ref|NP_827467.1| excinuclease ABC subunit C [Streptomyces avermitilis MA-4680]
 gi|81716929|sp|Q829W8|UVRC_STRAW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|29609954|dbj|BAC74002.1| putative excinuclease ABC subunit C [Streptomyces avermitilis
           MA-4680]
          Length = 681

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 189/629 (30%), Positives = 312/629 (49%), Gaps = 35/629 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              ++P+ PGVY+  D   RV+YVGKA +L++R+ SY         R   M++   ++ +
Sbjct: 10  KPGEIPDSPGVYKFRDEHHRVIYVGKAKSLRQRLASYFQDLAGLHPRTRTMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R        
Sbjct: 70  TVVSTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKRKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+  T++ L R F +R+C+  VF++     RPCLL  I +CS PC   +S+
Sbjct: 130 YFGPYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVERVSA 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E   E   F++G       ++ R M  A  + +YE A   RD + AL      N  
Sbjct: 190 EEHRELAEEFCDFMAGRTGTYIRRLERQMTDAAEEMEYEKAARLRDDIGALKKAMEKNAV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +        T A ++ + L+Q Y
Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVTTADLVEHALQQLY 309

Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    +    ++     + G  V + +P++G+K+ ++E    NA +S
Sbjct: 310 GEETGDSVPKEVLVPALPDPVEPVQEWLTGRRGSIVSLRIPQRGDKKSLMETVQRNAQQS 369

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P RIE YD SH+ G   V  MVV  +   
Sbjct: 370 LALHKTKRASDLTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLQ 429

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF------------HPKK 455
            K++YR+F +     + QDD   M  V+ RRF + +  +E                  + 
Sbjct: 430 RKSEYRRFQIKS--FEGQDDVRSMHEVITRRFRRYLSEKERTGEWADGDLKDGELKDDEG 487

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
           +   F   P +V++DGG+ Q++AA+  L +L +++ I +  +AK  +     E +    G
Sbjct: 488 RPKRFAYPPQLVVVDGGQPQVAAAKRALDELGIDD-IAVCGLAKRLE-----EVWLPDDG 541

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQS 574
           + +VL      LY +QR+RDEAHRFAIT  R +R K    SPLD++ G+G  RK+ L++ 
Sbjct: 542 DPVVLPRTSEGLYLLQRVRDEAHRFAITYQRTKRAKRFRASPLDDVAGLGETRKQALIKH 601

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKI 603
           FG+VK +  ++ + +  + GI +K A  I
Sbjct: 602 FGSVKKLRSATIDQICEVPGIGRKTAETI 630


>gi|311279138|ref|YP_003941369.1| excinuclease ABC, C subunit [Enterobacter cloacae SCF1]
 gi|308748333|gb|ADO48085.1| excinuclease ABC, C subunit [Enterobacter cloacae SCF1]
          Length = 610

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 209/618 (33%), Positives = 335/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FL+G +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLAGKDEQVVNQLVAKMEKASQALAFEEAARLRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S     G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 ARTLPGEILLDFNLGDKTLLAESLSALAGRRINVQTKPRGDRARYLKLARTNAATALVTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    LK       +P +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTISQRLKALATILKMPDVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V  +L+V   ++   ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LGQAKQVFAELDVSWDKHHPLLLGVAKGSDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI+ HRK+R K    S L+ I G+GP R+++LL+  G ++ + ++S E +A
Sbjct: 532 HIRDESHDHAISGHRKKRAKVKSTSTLETIEGVGPKRRQMLLKYMGGLQGLQKASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI+    
Sbjct: 592 KVPGISHGLAEKIFYSLK 609


>gi|168244792|ref|ZP_02669724.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451638|ref|YP_002045997.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|229557860|sp|B4T842|UVRC_SALHS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194409942|gb|ACF70161.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205336371|gb|EDZ23135.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 610

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 210/614 (34%), Positives = 334/614 (54%), Gaps = 31/614 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGAVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +  E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVGEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA 591

Query: 591 SIEGISKKIACKIY 604
            + GIS+ +A KI+
Sbjct: 592 KVPGISQGLAEKIF 605


>gi|221134466|ref|ZP_03560771.1| excinuclease ABC subunit C [Glaciecola sp. HTCC2999]
          Length = 609

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 209/612 (34%), Positives = 326/612 (53%), Gaps = 24/612 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++   PGVY+M +    V+YVGKA NL KR+ SY  + +   +   ++  I  +  TV 
Sbjct: 14  DKLTHQPGVYRMYNANDDVIYVGKAKNLNKRVSSYFKAKHDNSKTQSLVGHIAKMDVTVV 73

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EA +LE N IK+ +PR+NILL+DDKS+P+I I+  H+ P +  HR     +G YFG
Sbjct: 74  SSETEAFILENNFIKKYRPRYNILLKDDKSYPFIFIS-DHQHPKISMHRGPQKQKGEYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYME 182
           P+ S  AV++++ S Q+ F +R C D+ +R RTRPCL +Q++RCS PC    IS  +Y E
Sbjct: 133 PYPSAWAVKESLRSFQKIFPIRQCEDAYYRARTRPCLQYQMQRCSAPCVAGHISDVEYNE 192

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            V  AK FL G +  + + + + M +A+++  +E A   RD++ AL  +Q          
Sbjct: 193 QVLMAKLFLKGKDQQVIDTMVKQMEKASMELRFEHAARLRDQIGALRKVQEQQWVSGAQE 252

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKP 298
            MD F   +    ACIQ  F   G+  G+ +FF K  S       L  F+ QFY   +K 
Sbjct: 253 EMDVFGFAYKHGGACIQVMFVRDGKLLGSKSFFPKIPSVLGIDDALQSFILQFYLAGNKT 312

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I+L ++  E   +  +  +   YKVK     +  KR+ +E A  NA      + + 
Sbjct: 313 IPKQIILPQKLPEQEEVAEALSQHAKYKVKFYSGARDSKRRYLELANKNAENGLVSQQTQ 372

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           + S     KD           +R+E +D SH  G   V   VV   +G +K+ YR++N+ 
Sbjct: 373 QKSMFARYKDLESVIDRDEPIQRMECFDISHTSGQQTVASCVVFNRDGPLKSDYRRYNI- 431

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            + +   DD A M  VL RR+    ++E+ +              PD+V +DGGKGQL  
Sbjct: 432 -DGITGGDDYAAMAQVLARRYKYTQQDEDKI--------------PDIVFIDGGKGQLGQ 476

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEA 537
           A+   +K   E +  +I +AKG  R AG+E   +    E + +N   P L+ IQ +RDE+
Sbjct: 477 AEAHFEKWPFEKKPLLIGVAKGTSRKAGLETLIMAGSHETIPMNADQPGLHLIQHIRDES 536

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI  HR RR+K    S ++ I G+G  R++ LL+  G ++ + ++S E +  + GIS
Sbjct: 537 HRFAIAGHRNRRQKIKTTSTIESIPGVGAKRRQALLKYMGGLQGLKKASQEEIQKVPGIS 596

Query: 597 KKIACKIYNHFH 608
            ++A  IY+H H
Sbjct: 597 VQMAEIIYDHLH 608


>gi|117928317|ref|YP_872868.1| excinuclease ABC subunit C [Acidothermus cellulolyticus 11B]
 gi|189038014|sp|A0LTX2|UVRC_ACIC1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|117648780|gb|ABK52882.1| Excinuclease ABC subunit C [Acidothermus cellulolyticus 11B]
          Length = 641

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 192/637 (30%), Positives = 304/637 (47%), Gaps = 39/637 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
           ++ ++PE PGVY+  D   RV+YVGKA NL+ R+ SY         R   M++    + +
Sbjct: 10  AAGEIPESPGVYRFWDAHDRVIYVGKAKNLRARLTSYFADPALLHPRTRAMVTAAARLDW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +  TEVEAL LE N IK+ +PRFNI  RDDKS+PY+ +T    +P L  +R        
Sbjct: 70  VIVRTEVEALQLEYNWIKQYEPRFNIKYRDDKSYPYLAVTLAEPVPRLMVYRGKRKKGNR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGPFA   A+  T++ L R F  R+C+  V+R      RPCLL  I +CS PC G +S 
Sbjct: 130 YFGPFAHAWAIRDTLDLLLRVFPARTCSAGVYRRAQRIGRPCLLGYIGKCSAPCVGWVSE 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ + V +    + G       ++ ++M  A   ED+E A   RD  AAL         
Sbjct: 190 EQHRQIVLDFCDVMGGRATEYLRRLEKDMRAAAAAEDFERAARLRDDAAALRLAIEKQTV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  +L  +   A +   F   G+ RG   + ++       A ++ +FL Q Y
Sbjct: 250 VLPENTDADVIALADDDLEAAVHVFFVRDGRVRGQRGWVVEKVEALDTADLVQHFLAQLY 309

Query: 295 -----TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
                     P  IL+     +T  LE     + G +V I VP++G+K+ ++E    NA 
Sbjct: 310 GETGAESADVPREILVPVAPSDTETLERWLSSRRGGRVTIRVPQRGDKKALLETVAQNAA 369

Query: 350 RSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
           ++             +    L++  +   LP  P RIE YD S + G   V  MVV  + 
Sbjct: 370 QALHLHKVRRAGDLTARGRALREIQEALNLPDAPLRIECYDVSTLQGTDVVASMVVFEDG 429

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE-------------ENLNFH 452
              K++YR+F L         D   +  V+ RRF + +                +     
Sbjct: 430 LPRKSEYRRFALRG---VGGGDVGAIHEVISRRFRRYLDERMQTDSPIDDGTGPDQPRVD 486

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
                  F   P +VI+DGG  Q++AA+  L +L +++ + +  +AK  +     E +  
Sbjct: 487 AAAHHRKFSYPPSLVIVDGGAPQVAAAKKALDELGIDD-VALAGLAKRLE-----EIWLP 540

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLL 571
            + E ++L      LY +QRLRDEAHRFAI+ HR +R      S L+ I GIG  R++  
Sbjct: 541 DREEPVILPRASEGLYLLQRLRDEAHRFAISYHRAKRSTSMTRSVLEGIPGIGETRRKAF 600

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L+ FG+V+ + +++   LA++ G+ ++ A  ++   H
Sbjct: 601 LRHFGSVQRMRQATVAELAAVPGVGRRTAEVVFAALH 637


>gi|311113534|ref|YP_003984756.1| excision endonuclease subunit UvrC [Rothia dentocariosa ATCC 17931]
 gi|310945028|gb|ADP41322.1| excision endonuclease subunit UvrC [Rothia dentocariosa ATCC 17931]
          Length = 657

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 199/652 (30%), Positives = 322/652 (49%), Gaps = 52/652 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ SY       + +   M+    ++ +TV 
Sbjct: 13  DIPTHPGVYRFRDSHGRVIYVGKAKNLRNRLSSYFVAPERLSPKTYAMVHTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+E+L LE   IK  KPRFNI  RDDKS+PY+ +T + K P     R        YFG
Sbjct: 73  GSELESLQLEYTWIKEYKPRFNIAFRDDKSYPYLAVTMRDKFPRAQVMRGDRKKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           P++ V A+ +T+++L R F +R+C+  VF+      RPCLL  I +C+ PC G +S E++
Sbjct: 133 PYSQVWAIRETLDALLRVFPVRTCSAGVFKRAEASGRPCLLGYIDKCAAPCVGRVSPEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E      +F++GG      ++ R M +A    D+E A + RD + AL+     N  + +
Sbjct: 193 RELADGLCRFMAGGAEKFITQLTRRMKEAAADMDFERAAVLRDDITALTKAFERNAVVLS 252

Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D F+   ++  A +Q  F   G+ RG   + ++  ++    +++   L Q Y   
Sbjct: 253 DSVDADLFAFAQDELEASVQVFFVRGGRIRGQRGWIVEKVNDGGETELIEQLLVQVYGEM 312

Query: 295 ------------------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336
                             T    P  IL+    E T  L+       G KV I VP++G+
Sbjct: 313 AANIASAAAFDEDSGLDATQHEIPRQILVPTMPENTQQLQEWLSGMRGAKVDIAVPQRGD 372

Query: 337 KRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392
           K  +++    NA  S T   S       +    L +  +   LP    RIE YD SH+ G
Sbjct: 373 KAALMKTVAENAQHSLTLHKSRRAGDITTRSASLVELQEALELPDPLMRIECYDISHVQG 432

Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452
            + V  MVV  +    K+ YRKF++  +    +DD A M  V+ RRF + +  ++     
Sbjct: 433 TNVVASMVVFEDGMPTKSAYRKFSITGD--AARDDTASMYDVITRRFKRYLTEQQQRAET 490

Query: 453 PK-----------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501
           P            ++   F   P++V++DGG  Q++AAQ  L  L +E+ I ++ IAK  
Sbjct: 491 PLSSGEVTADESVQEPAKFAYPPNLVLVDGGPPQVAAAQSALSDLGIED-IYVVGIAKRL 549

Query: 502 KRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEI 560
           +     E +       ++L      LY +QR+RDEAHRFAI+ HR +R KA   S LD +
Sbjct: 550 E-----ELWLPDDDFPVILPRTSEALYLVQRIRDEAHRFAISFHRAKRGKAMVASALDSV 604

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            G+G +++  L++ FG+V  +  +S + L  + G+   +A K+++H ++  +
Sbjct: 605 PGLGSVKRAALIKHFGSVAKVRNASIKELQQVSGVGPALAQKVHDHLNQKET 656


>gi|15827213|ref|NP_301476.1| excinuclease ABC subunit C [Mycobacterium leprae TN]
 gi|221229691|ref|YP_002503107.1| excinuclease ABC subunit C [Mycobacterium leprae Br4923]
 gi|21264123|sp|Q9CCP1|UVRC_MYCLE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764939|sp|B8ZUN5|UVRC_MYCLB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|13092761|emb|CAC30070.1| putative excinuclease ABC subunit C [Mycobacterium leprae]
 gi|219932798|emb|CAR70655.1| putative excinuclease ABC subunit C [Mycobacterium leprae Br4923]
          Length = 647

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 183/639 (28%), Positives = 295/639 (46%), Gaps = 35/639 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     N   R   M++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDPYGRVIYVGKAKSLRSRLASYFADVANLHPRTRQMVTIAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFNI  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  NTEVEALQLEYNWIKEFDPRFNIRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +C+ PC G + +E++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSPGVFKRHKQIDRPCLLGYIDKCAAPCVGRVGAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG        + R M+ A  + D+E A   RD L AL         ++ 
Sbjct: 193 SQIVADFCDFLSGKTDRYARDLERKMSAAAEQLDFERAARLRDDLFALKRAMEKQAVVFG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA-------------- 283
                D  +  +++    +Q      G+ RG   + ++   +  +               
Sbjct: 253 DGTDADVVAFAYDELEVAVQVFHVRGGRVRGQRGWIVEKSDDPGDTGEEQLVEQFLAQFY 312

Query: 284 -QILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
            +          +  P P  +L+         L        G +V + VP++G+KR + E
Sbjct: 313 GEQAELDFVADESANPVPREVLVPCLPSNADELASWLSGLRGSRVALRVPRRGDKRALAE 372

Query: 343 QALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398
               NA     Q      S        L++      L + P RIE  D SH+ G   VG 
Sbjct: 373 TVQRNAKEELQQHKLKRASDFNSRSAALQNIQDTLGLSYAPLRIECVDISHVQGTDVVGS 432

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRF-SQLIKNEENLNFHPKKQ 456
           +VV  +    K+ YR F +       + DD A +  V  RRF   L    +     P+ +
Sbjct: 433 LVVFEDGLPRKSDYRHFGIRKAAGNGRSDDVASIAEVTRRRFLQHLHDQNDTNLLSPEGK 492

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
            + F   P++ ++DGG  Q++AA  VL++L + + + +I +AK  +     E +   +  
Sbjct: 493 SHRFAYPPNLYVVDGGAPQVNAASTVLEELGIID-VAVIGLAKRLE-----EVWVPFEPY 546

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575
            +++      L+ +QR+RDEAHRFAIT HR +R K    S LD + G+G  R++ L+  F
Sbjct: 547 PVIMPRNSEALFLLQRVRDEAHRFAITYHRSKRSKRMTASALDSVPGLGAHRRKALVTHF 606

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           G++  +  ++ E + ++ GI    A  +      ++S  
Sbjct: 607 GSIARLKDATVEQITAVPGIGVATATAVLEALRPDSSEA 645


>gi|296269970|ref|YP_003652602.1| excinuclease ABC subunit C [Thermobispora bispora DSM 43833]
 gi|296092757|gb|ADG88709.1| excinuclease ABC, C subunit [Thermobispora bispora DSM 43833]
          Length = 644

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 189/642 (29%), Positives = 315/642 (49%), Gaps = 44/642 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  G+V+YVGKA NL++R+ SY         R   M++   ++ +TV 
Sbjct: 13  SIPESPGVYRFRDAGGQVIYVGKAKNLRQRLNSYFTDFAGLHPRTQTMLTTAASVDWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      YFG
Sbjct: 73  SNEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMGEEYPRVQVLRGAKRKGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F +R+C+  VF+      RPCLL  I +CS PC G +++E++
Sbjct: 133 PYSHAWAIRETVDLLLRVFPVRTCSAGVFKRAAQMGRPCLLGYIDKCSAPCVGRVTAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            +   +   F++G      +++ R M +A   E++E A   RD + AL         +  
Sbjct: 193 RKIAEDFCSFMAGDTGRFIKRLEREMREAAEAEEFERAARLRDDIRALQRALEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++  +   A +Q  +   G+ RG   + +    +++  +++  FL Q Y D 
Sbjct: 253 EATDCDVIAIAEDALEAAVQVFYVRGGRIRGQRGWVVDKVDDASTGELVERFLLQMYGDA 312

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  IL+  E  +++ L     ++ G +V++ VP++G+K+ ++E    NA  S  Q   
Sbjct: 313 AVPREILVPVEPPDSAALAEVLSERRGGRVELRVPRRGDKKALLETVERNAKESLAQHKM 372

Query: 358 TEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
              S        L++      L   P RIE +D SH  G   VG MVV  +    K++YR
Sbjct: 373 RRASDLTTRSRALQEIADALGLEQAPLRIECFDVSHTQGSDVVGSMVVFEDGLARKSEYR 432

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE----------------------ENLNF 451
           +F +         D A +  V+ RRF + ++                             
Sbjct: 433 RFAVR----NPDGDAASIHEVVRRRFKRYLEERVATGDLAPALEGAEGDEERPGAGTPID 488

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
               +   F   P++V++DGG  Q +AAQ  L +L +++ + +  +AK  +     E + 
Sbjct: 489 PDTGRPRKFAYPPNLVVVDGGPAQAAAAQRALDELGIDD-VAVCGLAKRLE-----EVWL 542

Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRL 570
             +   ++L      LY +QR+RDEAHRFAIT HR +R KA   S LD I G+GP R++ 
Sbjct: 543 PGEDHPVILPRGSEGLYLLQRIRDEAHRFAITYHRSKRSKALKESALDGIPGLGPARRQA 602

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           LL+ FG++K +  ++ E + ++ GI    A  I +    + +
Sbjct: 603 LLRHFGSLKRLRDATEEEIRAVPGIGPATAEAIVSALRGDKA 644


>gi|81639681|sp|Q66BN5|UVRC_YERPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|51589353|emb|CAH20975.1| excinuclease ABC subunit C [Yersinia pseudotuberculosis IP 32953]
          Length = 610

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 215/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  +     +   ++  I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y 
Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   + FLSG +  +  ++   M +A+ +  +E A   RD++ A+  +        + 
Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
              D   +  +  LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY     
Sbjct: 250 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +
Sbjct: 310 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    +K+  K   L     R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 370 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL+RR+ + + +++                PDV+ +DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           LS A  V   LNV   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR+RR K    S L+ I G+GP R++ LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQALLKYMGGLQPLFNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KI+N   
Sbjct: 592 KVPGISQALAEKIHNALK 609


>gi|152980018|ref|YP_001353066.1| excinuclease ABC subunit C [Janthinobacterium sp. Marseille]
 gi|229558035|sp|A6SXR9|UVRC_JANMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|151280095|gb|ABR88505.1| excinuclease ABC subunit C [Janthinobacterium sp. Marseille]
          Length = 618

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 216/619 (34%), Positives = 323/619 (52%), Gaps = 34/619 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D    +LYVGKA +L+KR+ SY   N  + R   M+ +I  +  TVT 
Sbjct: 19  KLPNLPGVYRYFDAEDNLLYVGKARDLKKRVSSYFLKNLASPRTALMVERIARLETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L+PR+NIL RDDKS+PY+ IT +   P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQE-YPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV++++  LQ+ F LR+C DSVF +RTRPCLL QI RCSGPC   IS E Y   V
Sbjct: 138 FPSGWAVKESMQILQKVFLLRTCEDSVFANRTRPCLLHQIHRCSGPCVNFISKEDYALDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A KFL G    + E +   M     +  +E A + R+++ ALS + +           
Sbjct: 198 ENAAKFLRGRQSEVLETLQGKMLAYAEELKFEQAALVRNQINALSRVLHQQSMETGGDAD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-------DSESTNAQILSYFLRQFY 294
           +D  ++      AC+       G++ G   +F            ES   +++  FL Q Y
Sbjct: 258 IDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNALASAEESIATEVMKAFLAQHY 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +K  P  ++L+ E +E  L+     +Q G+++ +    QG++R+ +E A   A  S  +
Sbjct: 318 IEKFIPGTLILNTEMDEPELMLALM-EQCGHRINVVFQPQGQRRQWLEMAHKGAEISLAR 376

Query: 355 KLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
            LS + S Q   +       +        R+E +D SH  G +     VV   +     +
Sbjct: 377 LLSEQGSQQARTRMLVDALGIDVPDLESFRVECFDISHTQGEATQASCVVFHHHAMQNGE 436

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++N++   +   DD A MR VL RR+ ++   +                 PDVV++DG
Sbjct: 437 YRRYNIND--ITPGDDYAAMRQVLLRRYEKVANGD--------------GVMPDVVLIDG 480

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFI 530
           GKGQ+  A+ V  +L ++  + I+ +AKG  R  G+E      G     L      L  I
Sbjct: 481 GKGQVEMARQVFVELGLDISL-IVGVAKGEGRKVGLETLVFVDGRPPQELGKESGALMLI 539

Query: 531 QRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            ++RDEAHRFAIT  R +R KA   S L+EI GIG  R++ LL  FG ++ +  +S E L
Sbjct: 540 AQIRDEAHRFAITGMRAKRAKARQTSRLEEIEGIGAKRRQKLLARFGGLRGVVDASIEDL 599

Query: 590 ASIEGISKKIACKIYNHFH 608
           AS+EGIS+++A  IY   H
Sbjct: 600 ASVEGISRQLAEDIYKQLH 618


>gi|126726024|ref|ZP_01741866.1| excinuclease ABC subunit C [Rhodobacterales bacterium HTCC2150]
 gi|126705228|gb|EBA04319.1| excinuclease ABC subunit C [Rhodobacterales bacterium HTCC2150]
          Length = 641

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 263/609 (43%), Positives = 377/609 (61%), Gaps = 14/609 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+MLD   RVLYVGKA NL+KR+ +Y + N HT RI+ MIS+  ++ F  T 
Sbjct: 41  SLDNSPGVYRMLDEESRVLYVGKARNLKKRVSNYANPNGHTGRISRMISETASMMFLTTT 100

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK+LKP++N+LLRDDKSFP IL+  +H  PA+ KHR +   +GSY+GP
Sbjct: 101 TETEALLLEQNLIKQLKPKYNVLLRDDKSFPNILVGKEHGFPAIKKHRGAKKEKGSYYGP 160

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FAS  AV  T+N LQ+ F LR+C D+ F  RTRPCL +QIKRC+ PC G IS   Y   V
Sbjct: 161 FASAMAVNNTLNHLQKVFLLRNCTDASFEARTRPCLQYQIKRCAAPCVGYISDADYGSLV 220

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
            +A+ FL+G +  ++E +A +M  A+   ++E A   RDR+ AL+ +Q            
Sbjct: 221 KDAENFLAGKSTKIQENLAADMQAASEAMEFERAAALRDRIKALTQVQQSQGINPKGVAD 280

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +L+     AC+Q  F    QN G   ++ +  ++++ A+++  F  QFY +K  P 
Sbjct: 281 ADVIALFMQGGQACVQVFFIRANQNWGNHDYYPRVPADASPAEVMQAFATQFYDNKEPPR 340

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +LLS++ E++ LL  +  ++ G KV+I VP++GEK  +I  AL N+  S  +K+S   +
Sbjct: 341 MVLLSDDIEDSDLLVQALSEKAGRKVEILVPQRGEKADLIANALRNSRESLARKMSETAT 400

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +LK   +   +   P R+E+YDNSHI G +AVG M+V G  GF   QYRKFN+  +D
Sbjct: 401 QARLLKGLAEALDMDAPPNRVEVYDNSHIQGTNAVGAMIVAGPEGFATGQYRKFNIKGDD 460

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD  MM+ VL RRF +LIK +          E +  +WPD++I+DGG GQ+SA   
Sbjct: 461 LTPGDDFGMMKEVLTRRFKRLIKED---------PERTSGNWPDLLIIDGGMGQVSAVAE 511

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           ++ +  V + I ++ +AKG  R AG E+F         L   DP+LYF+QR+RDEAHRFA
Sbjct: 512 IMTEWGVTD-IPMVGVAKGVDRDAGKEEFHRTGKRPFALRHNDPVLYFVQRMRDEAHRFA 570

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I THR +R K+   +PLDE+ GIG  RKR LL  +G+ K +SR+    L ++EGIS  +A
Sbjct: 571 IGTHRAKRAKSQFKNPLDEVPGIGAARKRALLAHYGSAKAVSRAGLSDLKAVEGISDSMA 630

Query: 601 CKIYNHFHK 609
             IY+ FH+
Sbjct: 631 QSIYDFFHE 639


>gi|283795859|ref|ZP_06345012.1| excinuclease ABC subunit C [Clostridium sp. M62/1]
 gi|291076490|gb|EFE13854.1| excinuclease ABC subunit C [Clostridium sp. M62/1]
          Length = 621

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 202/620 (32%), Positives = 324/620 (52%), Gaps = 21/620 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N T +I  M+S+I    +
Sbjct: 7   ELKKLPAQPGVYIMHDDKDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEKMVSRIARFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +L+DDK++PYI +T     P +   R     +  
Sbjct: 67  ILTDSELEALVLECNLIKEHRPKYNTMLKDDKTYPYIKVTVSEAFPRILFSRTMKKDKNK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGPF S  AV+  I+ L + + +R+C+ ++ R   + RPCL + I++C GPC G IS E
Sbjct: 127 YFGPFTSSGAVKDMIDLLHKIYRIRTCSRNLPRDIGKDRPCLYYHIRQCDGPCQGFISQE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + + E   FLSG    + + +   M  A+ + ++E A  +RD L ++  I       
Sbjct: 187 DYQKQIKEVLDFLSGKYDPVTKLLTDRMYAASEEMEFEKAAEYRDLLKSVRQIAQKQKIT 246

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  ++  ++    +Q  F   G+  G   F ++  +  TN+QIL+ F++QFY 
Sbjct: 247 SQSMDDRDIIAMAKDERDVVVQVFFVRDGRLIGREHFHVEAGTAETNSQILNGFVKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  P  I   EE E+  ++      + G KVKI VPK+GEK K++E A  NA     +
Sbjct: 307 GTPFIPHEIWCQEELEDAEVISSFLSGRRGQKVKILVPKKGEKEKLVELAKKNAKMVLDQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E+     +        L  +  RIE YD S+I G  +VG M+V  +    +N
Sbjct: 367 DKEKIKREELRTTGAMNQIGGLIGLSRVR-RIEAYDISNISGFESVGSMIVYEDGRPKRN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YRKF +    V+  +D A MR VL RRFS  +   EE L         SF  +PD++++
Sbjct: 426 DYRKFRIKT--VQGPNDYASMREVLTRRFSHGLAEREEILEGGGDLSMGSFTRFPDLIMM 483

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++ A  VL++L +   I +  + K                E + ++        
Sbjct: 484 DGGRGQVNIALEVLEELGIA--IPVCGMVKDDSHRTRG---LYYNNEEVPIDRYSEGFKL 538

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DEAHRFAI  HR  R K    S LD+I GIGP R++ L++ F T++ +  +  E 
Sbjct: 539 ITRIQDEAHRFAIEYHRSLRGKTQVRSVLDDIRGIGPARRKALMRYFKTIEAVREAGVEE 598

Query: 589 LASIEGISKKIACKIYNHFH 608
           L  +  +++  A  +Y+ FH
Sbjct: 599 LLEVPQMNQAAAEAVYSFFH 618


>gi|15838902|ref|NP_299590.1| excinuclease ABC subunit C [Xylella fastidiosa 9a5c]
 gi|9107478|gb|AAF85110.1|AE004042_9 excinuclease ABC subunit C [Xylella fastidiosa 9a5c]
          Length = 627

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 225/603 (37%), Positives = 336/603 (55%), Gaps = 19/603 (3%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY M      +LYVGKA  L+KR+ SY +      R+T M++Q+  +  T+T  E E
Sbjct: 27  APGVYCMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITRNEAE 86

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK L PR+N+LLRDDKS+PY+L+T +   P +  HR    + G YFGP+  V
Sbjct: 87  ALLLENQLIKSLAPRYNVLLRDDKSYPYVLLT-REAWPRIALHRGPQIVPGRYFGPYPGV 145

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            AV   +N + + F LRSC DSVFR+R+RPCL +QI RCS PC   ++ + Y E V    
Sbjct: 146 TAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAVRRVT 205

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFS 246
            FL G +  L E++ + M  A+   ++E A   RD L +L  +QN          +D  +
Sbjct: 206 LFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADLDVLA 265

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
                  AC+    F  G+N GT  FF KT+ E   A+ILS F+ Q+Y + P P  ILL 
Sbjct: 266 CAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPEILLD 325

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
           +E  + +LLE +F +   +K+ +    +GE+   +E A+ NA  + + +L+++ + ++  
Sbjct: 326 QEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQRVRS 385

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           +   +   L    KR+E +D SH MG + V   VV    G V++QYR++N+    +   D
Sbjct: 386 EAVRQLLGLEEPIKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGITPGD 443

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A MR  +ERRF + ++ ++                PDV+ +DGG GQL+ A+  L  +
Sbjct: 444 DYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMALNAV 491

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
            VE  + ++ ++KG +R AG E   +  G+ L      P L FIQ++RDEAHRFAIT HR
Sbjct: 492 GVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGAASPALQFIQQVRDEAHRFAITGHR 550

Query: 547 KRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            RR+K    S L++I GIG  R+  LL+ FG +  +  +    +A +EGIS  +A KIY 
Sbjct: 551 ARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAAKIYA 610

Query: 606 HFH 608
             H
Sbjct: 611 SLH 613


>gi|32130309|sp|Q9PB34|UVRC_XYLFA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 621

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 225/603 (37%), Positives = 336/603 (55%), Gaps = 19/603 (3%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY M      +LYVGKA  L+KR+ SY +      R+T M++Q+  +  T+T  E E
Sbjct: 21  APGVYCMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITRNEAE 80

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK L PR+N+LLRDDKS+PY+L+T +   P +  HR    + G YFGP+  V
Sbjct: 81  ALLLENQLIKSLAPRYNVLLRDDKSYPYVLLT-REAWPRIALHRGPQIVPGRYFGPYPGV 139

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            AV   +N + + F LRSC DSVFR+R+RPCL +QI RCS PC   ++ + Y E V    
Sbjct: 140 TAVRDMLNLIHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVNVVTHDNYTEAVRRVT 199

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFS 246
            FL G +  L E++ + M  A+   ++E A   RD L +L  +QN          +D  +
Sbjct: 200 LFLEGKSDLLAEELIQAMQVASEHLEFEQAARLRDLLTSLRSMQNRQYVDGRAADLDVLA 259

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
                  AC+    F  G+N GT  FF KT+ E   A+ILS F+ Q+Y + P P  ILL 
Sbjct: 260 CAALSGHACVLLLSFRDGRNLGTRMFFPKTNGEERTAEILSAFVSQYYAEYPPPPEILLD 319

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
           +E  + +LLE +F +   +K+ +    +GE+   +E A+ NA  + + +L+++ + ++  
Sbjct: 320 QEIPDHTLLEAAFSRSSAHKISLRWNVRGERAGYVELAVRNAQVALSTELTSQRAQRVRS 379

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           +   +   L    KR+E +D SH MG + V   VV    G V++QYR++N+    +   D
Sbjct: 380 EAVRQLLGLEEPIKRVECFDISHTMGEATVASCVVFDAVGPVRSQYRRYNI--TGITPGD 437

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A MR  +ERRF + ++ ++                PDV+ +DGG GQL+ A+  L  +
Sbjct: 438 DYAAMRQAIERRFRRAVEEDKQ------------GERPDVLFIDGGAGQLAQAKMALNAV 485

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
            VE  + ++ ++KG +R AG E   +  G+ L      P L FIQ++RDEAHRFAIT HR
Sbjct: 486 GVE-SVLLVGVSKGEERRAGHETLIMLDGQELHPGAASPALQFIQQVRDEAHRFAITGHR 544

Query: 547 KRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            RR+K    S L++I GIG  R+  LL+ FG +  +  +    +A +EGIS  +A KIY 
Sbjct: 545 ARRQKTRMTSKLEDIPGIGSRRRANLLKHFGGLAGVKAAGQTEIARVEGISTALAAKIYA 604

Query: 606 HFH 608
             H
Sbjct: 605 SLH 607


>gi|114047120|ref|YP_737670.1| excinuclease ABC subunit C [Shewanella sp. MR-7]
 gi|119367836|sp|Q0HW92|UVRC_SHESR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|113888562|gb|ABI42613.1| Excinuclease ABC subunit C [Shewanella sp. MR-7]
          Length = 609

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 200/611 (32%), Positives = 327/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+ G V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 16  SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIHHIDVTLTHSET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYI ++ +H+ P L  HR     +G YFGP+ +
Sbjct: 76  DALLLENDYIKQYMPKYNVLLRDDKSYPYIFLS-QHEHPRLAYHRGPLREKGYYFGPYPN 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ RTRPCL +Q+ RCS PC G++S+ +Y E V  A
Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCVGKVSNAEYDEQVKLA 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +  ++   M +A  ++ YE A   RD++ AL  +    +   N   MD  
Sbjct: 195 SLFLKGKDKQVISELVAKMEEAAEQQAYEQAARFRDQIMALRRVAEQQEVSGNTGDMDVI 254

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            +++   +AC    F   G+  G+ +++    +++   ++L  FL QFY +    +  P+
Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLLQFYLNADIQRTIPK 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +  +    K  I    + ++   +  AL NA  +   +LS + +
Sbjct: 315 EVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLALTNATNAVMTRLSHKNT 374

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L    +R+E +D SH MG S V   VV    G  K +YR++N+    
Sbjct: 375 VEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGPHKAEYRRYNIEG-- 432

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++                +    PD++ +DGG GQL  AQ 
Sbjct: 433 ITPGDDYAAMKQAISRRFDKI---------------DASGKIPDILFIDGGLGQLRIAQQ 477

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  +N++    +I +AKG  R  G+E       E +  L    P L+ IQ +RDE+H
Sbjct: 478 IVDEKFVNLDKAPQLIGVAKGESRKPGLETLIFGDTESSFSLEDDSPALHLIQHIRDESH 537

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   LA + GIS 
Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPGISI 597

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 598 EMAQTIHDALR 608


>gi|332306858|ref|YP_004434709.1| excinuclease ABC, C subunit [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174187|gb|AEE23441.1| excinuclease ABC, C subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 608

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 203/614 (33%), Positives = 330/614 (53%), Gaps = 25/614 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA NL+ R+ SY  S   + +   ++ QI ++  TV
Sbjct: 13  LKDLTHQPGVYRMYNHKQDVIYVGKAKNLKNRVSSYFRSQVDSIKTQSLVKQIAHMDVTV 72

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E EA +LE N+IK+ KPR+N+LLRDDKS+P+I ++  H+ P L  HR    ++G YF
Sbjct: 73  VHSEAEAFILENNLIKKYKPRYNVLLRDDKSYPFIFLS-DHQHPRLANHRGPKKLKGEYF 131

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+ S  AV +++ ++QR F +R C DS +R R+RPCL +Q++RC+GPC    ++ E+Y 
Sbjct: 132 GPYPSAWAVRESLRTMQRIFPIRQCEDSYYRARSRPCLQYQLQRCAGPCVDGLVTDEEYQ 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V  A+ FL G N  + + + + M  A+    +E+A  +RD+++AL+ +Q       N+
Sbjct: 192 AQVDLARMFLKGKNKQVIDSLVQRMESASENLRFEAAARYRDQISALNKVQEQQWVSGNQ 251

Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DK 297
             MD F   +   +A IQ  F    +  G+ +F+ K  +++T+ ++   F+ QFY   +K
Sbjct: 252 EEMDVFGFAYRNGIASIQGLFIRDNKLLGSKSFYPKVPADATDEEVFQSFILQFYLAGNK 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I+   E  E   +E    K+ G +++     + EKR+ ++ A  NA  +   K  
Sbjct: 312 VIPKQIVTPIELSEQGAIEELLTKEAGRRIQFYRGVRDEKRRYLDLANTNAENALIAKQG 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + S      +  K        +R+E +D SH  G   V   VV    G  K  YR+FN+
Sbjct: 372 QQKSVFARYTELEKILEFEQPIQRMECFDISHTSGQLTVASCVVFNREGPFKADYRRFNI 431

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M   L RR+  +  + +                PD++ +DGGKGQL+
Sbjct: 432 EG--ITPGDDYAAMAQALARRYRDVKDDSK---------------IPDILFIDGGKGQLT 474

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDE 536
            A+   +    E +  +I +AKG  R AG+E   +      + L+     L+ IQ +RDE
Sbjct: 475 QAEEYFEDWKHEKKPLLIGVAKGSSRKAGLETLILAGNHATIPLSGDSIALHLIQHIRDE 534

Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           +HRFAIT HR RR+K    S L+ I G+G  R++ LL+  G ++ I ++S   +A++ GI
Sbjct: 535 SHRFAITGHRARRQKDKKTSKLESIPGVGAKRRQSLLKYMGGLQGILQASRSEIANVPGI 594

Query: 596 SKKIACKIYNHFHK 609
           S ++A  IY+H H 
Sbjct: 595 SAELADTIYDHIHN 608


>gi|294789082|ref|ZP_06754321.1| excinuclease ABC subunit C [Simonsiella muelleri ATCC 29453]
 gi|294482823|gb|EFG30511.1| excinuclease ABC subunit C [Simonsiella muelleri ATCC 29453]
          Length = 613

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/619 (34%), Positives = 329/619 (53%), Gaps = 28/619 (4%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P   GVY+M+     VLYVGKA NL++R+ SY   ++H+ RI+ MI QI  +  
Sbjct: 11  IFLKSLPNSSGVYRMIAADDSVLYVGKAVNLKRRVSSYFQKSDHSPRISLMIKQIAWVEI 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+T +E EAL+LE N+IK L P++NIL RDDKS+PY++I+  H  P L   R +      
Sbjct: 71  TLTRSEAEALILENNLIKSLSPKYNILFRDDKSYPYLMIS-GHTFPKLAYFRGTPQKPNQ 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ +  AV  +I  LQ+ F LR+C DSVF HR RPCLL QIKRCS PC G +S + Y
Sbjct: 130 YFGPYPNGYAVRDSIEILQKVFQLRTCEDSVFSHRDRPCLLAQIKRCSAPCVGSVSRDDY 189

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V  A  FL+G   +L + + + M QA    D+E+A   RD++ AL  IQ+       
Sbjct: 190 AEQVRNAAAFLNGKTADLLKDLEKQMFQAADDLDFETAAKLRDQIQALGVIQSKQFIDSQ 249

Query: 241 ------RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQ 292
                  +D  +L       C+       G++ G  +FF  T  +           F+ Q
Sbjct: 250 SVGNQADIDIVALAQANGGVCLHWVSIRGGRHVGDKSFFPDTRHDPNPNGQDYAEAFVAQ 309

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
            Y  K  P+ ++ +        L+ +   ++   ++    ++GE++  + +A+ NA  + 
Sbjct: 310 HYLGKMKPDVLICNFRLP--ESLQAALNSEHSRAIQFPKAEKGERKVWLNRAIQNAEHAL 367

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
           +Q     ++ Q  +    +   LP    +R+E +D SH  G + +   VV  +     +Q
Sbjct: 368 SQHQLQNVNQQARVAALAEIVGLPESDLQRLECFDISHTQGEATMASCVVYDDFAMQPSQ 427

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++N+      T DD   MR VL RR+ ++ + +                +PD V++DG
Sbjct: 428 YRRYNITT---ATNDDYTAMREVLTRRYGKMKQAQ---------AAGEVVRFPDAVLIDG 475

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFI 530
           G GQ+  A  V ++L +   I ++ IAKG +R AG+E+  +   GE   L    P L+ +
Sbjct: 476 GMGQIGVAVAVWEELGLT--IPLVGIAKGVERKAGLEELILPFSGERFRLPPNSPALHLL 533

Query: 531 QRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           Q +RDE+HRFAIT  R +R KA   S L++I+G+G  RK  LL  FG ++ +  +S + L
Sbjct: 534 QTVRDESHRFAITGMRAKRDKARVTSSLNDIDGVGAKRKAALLMRFGGLRGVQAASVDDL 593

Query: 590 ASIEGISKKIACKIYNHFH 608
           A  EGIS+ +A KIY + H
Sbjct: 594 AQTEGISRALAEKIYEYLH 612


>gi|56459762|ref|YP_155043.1| excinuclease ABC subunit C [Idiomarina loihiensis L2TR]
 gi|81363435|sp|Q5R0A6|UVRC_IDILO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56178772|gb|AAV81494.1| Nuclease subunit of the excinuclease complex, UvrC [Idiomarina
           loihiensis L2TR]
          Length = 612

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 205/614 (33%), Positives = 329/614 (53%), Gaps = 27/614 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D +G V+YVGKA +L+KR+ SY        +   ++ QI ++  TVT 
Sbjct: 18  HLTHQPGVYRMYDESGDVIYVGKAKDLRKRVSSYFREKVDRMKTQVLVKQIASMDVTVTN 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LE + IK+ +PR+N+LLRDDKS+PYI++T  H+ P L  HR +   +G YFGP
Sbjct: 78  TEAEALILENSFIKKYRPRYNVLLRDDKSYPYIILT-SHQHPKLGFHRGARRAKGDYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +  AV +++N LQ+ F +R C DS +R RTRPCL +Q+KRC  PC    + ++Y E V
Sbjct: 137 FPNGSAVRESLNLLQKLFPIRQCDDSYYRARTRPCLQYQLKRCLAPCVNVCTDDEYNEQV 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             AK+FL G N  + +++   M QA+   D+E A   RD++AAL   Q  N    ++   
Sbjct: 197 ALAKQFLQGKNQQVIDELMNKMEQASTDLDFERAARFRDQIAALRKTQERNSVTGSQQEL 256

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KP 298
           D   L     +  +Q  F      +G+ ++F K  +++ + ++L  FL QFY      + 
Sbjct: 257 DVIGLARGNGMTTVQMLFIRDNHLQGSRSYFPKVPTDTPDDEVLRAFLLQFYLSDTAGRK 316

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  ++L  + +  ++L           VK+    +G+KR+    A  NA  +   +L+ 
Sbjct: 317 IPREVVLPVDVQPDNVLAEVMSDALSQPVKLQSSVRGDKRQYQSLAQKNAVNALESRLNQ 376

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           + +     +   +        +R+E +D SH MG   V   VV  +NG  K+ YR++N+ 
Sbjct: 377 QSTMNRRTQALQQVLEFGVPIQRMECFDISHTMGQQTVASCVVFDQNGPKKSDYRRYNI- 435

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   DD A M   L +R+    +                 + PD++ +DGGKGQL+ 
Sbjct: 436 -TGITPGDDYAAMSKALAKRYDNAKEQ---------------GNIPDILFIDGGKGQLAQ 479

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEA 537
           A+        E  + +I +AKG  R  G+E   +    E + L+     L+ IQ +RDE+
Sbjct: 480 AENYFNDWGKEAPV-LIGVAKGESRKPGLETLIMAGSHETIPLSKDASALHLIQHIRDES 538

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR++R K    S L++I+G+G  R++ +L++ G ++ +  +S + LAS+ GIS
Sbjct: 539 HRFAITGHRQKRAKVKKTSTLEQIDGVGAKRRQAILKNLGGLQEVKNASIDKLASVPGIS 598

Query: 597 KKIACKIYNHFHKN 610
           + +A KIY  F   
Sbjct: 599 RSLAEKIYYSFRDE 612


>gi|302385500|ref|YP_003821322.1| excinuclease ABC, C subunit [Clostridium saccharolyticum WM1]
 gi|302196128|gb|ADL03699.1| excinuclease ABC, C subunit [Clostridium saccharolyticum WM1]
          Length = 623

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 202/620 (32%), Positives = 325/620 (52%), Gaps = 21/620 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N T +I  M+S+I    +
Sbjct: 11  ELKKLPSQPGVYLMHDKRDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEQMVSRIARFEY 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +PR+N +L+DDK++PYI +T     P +   RD    +  
Sbjct: 71  IITDSELEALVLECNLIKEHRPRYNTMLKDDKTYPYIKVTVYEDYPRILFSRDMKKDKSK 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  + + + +R+C  ++ R   + RPCL + IK+CS PC   IS E
Sbjct: 131 YFGPYTSAGAVKDTIEMIHKLYQIRTCNRNLPRDIGKERPCLNYHIKQCSAPCQNYISKE 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y + +H A  FL G    + + +   M  A+ + DYE AI  RD L ++  I       
Sbjct: 191 EYWKSIHRALDFLGGKYGPVIKMLEEKMQAASEEMDYEKAIECRDLLNSVRQIAQKQKIT 250

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           DS     D  ++  ++  A +   F   G+  G   F +   +   N+QIL+ F++QFY 
Sbjct: 251 DSGMEDRDIIAMAKDEKDAVVSVFFVREGRLIGREHFHVSIATAEDNSQILTSFVKQFYA 310

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
             P  P+ + +    E+  ++      + G KVKI VP++G+K +++E A  NA     +
Sbjct: 311 GTPFIPKELWIQTGLEDEGVIGEWLSGKRGQKVKIVVPRKGQKERLVELAEKNAVLVLSQ 370

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E+     + +      L  I  RIE +D S+I G  +VG M+V  +    +N
Sbjct: 371 DKEKIKREELRTVGAMNEVGDWLGLKGIK-RIEAFDISNISGFESVGSMIVYEDGKPKRN 429

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469
            YRKF +    VK  +D A M  VL RRFS  +K  E+L      +E  SF  +PD++++
Sbjct: 430 DYRKFKIKW--VKGANDYASMNEVLTRRFSHGLKEAESLKEKGVDEELGSFTRFPDLIMM 487

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++ A  VLK+L++   I +  + K                  + ++        
Sbjct: 488 DGGRGQVNIALEVLKELDIS--IPVCGMVKDDNHRTRG---LYYNNVEIPIDRHSEGFKL 542

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + R++DEAHRFAI  HR  R K    S LD+I GIGP R++ L++ F  ++ I  ++ E 
Sbjct: 543 VTRIQDEAHRFAIEYHRSLRSKGQVKSILDDIPGIGPNRRKALMRRFKGLEAIKEATLEE 602

Query: 589 LASIEGISKKIACKIYNHFH 608
           L+   G++   A  +Y  FH
Sbjct: 603 LSQTPGMNALAAKSVYEFFH 622


>gi|82702400|ref|YP_411966.1| excinuclease ABC, C subunit [Nitrosospira multiformis ATCC 25196]
 gi|119367678|sp|Q2Y9J7|UVRC_NITMU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|82410465|gb|ABB74574.1| Excinuclease ABC subunit C [Nitrosospira multiformis ATCC 25196]
          Length = 606

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 226/611 (36%), Positives = 339/611 (55%), Gaps = 28/611 (4%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+M++ AG+V+YVGKA +L+KR+ SY   N    R   M+SQI  I  TVT +
Sbjct: 16  LPSQPGVYRMMNSAGQVIYVGKAIDLKKRVSSYFQKNGLAPRTQLMVSQIAGIETTVTRS 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE N+IK L PR+NIL RDDKS+PY++++  H+ P L  HR     +  YFGPF
Sbjct: 76  EAEALLLENNLIKSLNPRYNILFRDDKSYPYVILS-GHRFPRLGFHRGPLDKKHHYFGPF 134

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +   V ++I  LQ+ F +R+C DSVF +RTRPCLL+QIKRCSGPC   +S E Y E   
Sbjct: 135 PNAGMVRESIQLLQKVFRIRTCEDSVFSNRTRPCLLYQIKRCSGPCVDLVSEEVYAEDAR 194

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY------ 239
           +A+ FL G    + + I R M++A  +++YE A + RD++ +L  I              
Sbjct: 195 DAELFLQGKQTEVLKSITRKMHEAAEEQEYEQAALFRDQIQSLRKICERQFVDSGRALDA 254

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           + + C +  +     C+       G++ G  +FF +       A +   FL Q Y ++  
Sbjct: 255 DIVACVAENNGGGRVCVNLAMVRGGRHLGDKSFFPQNAEGYDLATVAEAFLAQHYLNRSI 314

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ I++ E     SL  +   +Q G+KV I V   G +R  +E A  NA  +  Q L  +
Sbjct: 315 PDLIIVGERVPRESLQAL-LTQQAGHKVIINVNPIGSRRVWLEMATENAALALEQMLGRQ 373

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            S +  L    +   +  +  RIE +D SH MG + +   VV    G   ++YR++N+  
Sbjct: 374 ASQEERLLALQQALDMTGLS-RIECFDISHTMGEATIASCVVYDNFGMRNSEYRRYNITD 432

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR VL RR+ ++ + E NL              PD++++DGG+GQ++AA
Sbjct: 433 --ITPGDDYAAMRDVLSRRYHKIAEGEGNL--------------PDLILIDGGRGQINAA 476

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
             V+ +L + +   ++ +AKG +R  G+E   F    + L L+   P L+ IQ++RDEAH
Sbjct: 477 LEVMVELGLNDA-NLVGVAKGEERKPGLEQLIFPGVKKPLQLSKDHPGLHLIQQIRDEAH 535

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HR +  KA   S L++I GIG  R++ LL  FG +K +  +S E L   +GIS+
Sbjct: 536 RFAIYGHRAKLGKARVSSSLEQIAGIGAKRRQSLLARFGGLKGVRTASIEELQQADGISR 595

Query: 598 KIACKIYNHFH 608
            +A KIY   H
Sbjct: 596 ALAEKIYRELH 606


>gi|284008139|emb|CBA74371.1| UvrABC system protein C (excinuclease ABC subunit C) [Arsenophonus
           nasoniae]
          Length = 600

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 220/618 (35%), Positives = 339/618 (54%), Gaps = 31/618 (5%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +   PGVY+M D +G V+YVGKA +L+KR+ SY      + +   ++  I  I  TVT
Sbjct: 2   QTVTSQPGVYRMYDTSGVVIYVGKAKDLKKRLASYFRGQVTSRKTEQLVKNIAQIDITVT 61

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++   K P L  HR +   +G YFG
Sbjct: 62  HTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-ADKHPRLAMHRGAMKAKGDYFG 120

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYME 182
           PF SV+AV +T+  LQ+ F LR C DSV+R+R+RPCL +QI RC GPC    ++ E+Y +
Sbjct: 121 PFPSVNAVRETLALLQKLFPLRQCEDSVYRNRSRPCLQYQINRCLGPCVSGLVTDEEYYQ 180

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V   + FLSG +  +  ++ +NM QA+    +E+A  +RD++ A+  +        N  
Sbjct: 181 QVEYVRLFLSGKDQQVLNQLIQNMEQASQTLKFENAARYRDQIQAVRAVTEQQFVSGNTQ 240

Query: 243 DCFSL--YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296
           D  ++   ++  +AC+Q  F   G+  G+ +++ K  + +  ++++  FL QFY      
Sbjct: 241 DLDAISVAYHLGIACVQVLFIRQGKVLGSRSYYPKIPANTQLSEVVQTFLGQFYLQGSEI 300

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  ILL     E +L      K  G K+ I V  +G K K ++ A  NA  +   K+
Sbjct: 301 RSLPAEILLDFLLPEKALFTDLLTKIAGRKINIQVRPRGIKAKYLKLARTNAATALATKV 360

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + + +    ++       +     R+E +D SH  G   V   VV   NG ++++YR++N
Sbjct: 361 AQQSTIHQRMEALADLLGIE-KIYRMECFDISHTSGQQTVASCVVFDSNGPLRSEYRRYN 419

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M  VL RR+ + +   +                PDV+ +DGGKGQL
Sbjct: 420 IID--ITPGDDYAAMYQVLTRRYGKHVDESK---------------VPDVIFIDGGKGQL 462

Query: 477 SAAQGVLKKLNVENRIT---IISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQR 532
           + A GV + LNV+  IT   +I +AKG  R AG+E  F    GE L L    P L+ IQ 
Sbjct: 463 AQAIGVFQALNVDWDITRPKLIGVAKGHDRKAGLETLFFKPDGEGLSLPPDSPALHLIQN 522

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S + +A 
Sbjct: 523 IRDESHNHAITGHRQRRAKVRNTSTLESIEGVGPKRRQMLLKYMGGLQALRNASIDEIAK 582

Query: 592 IEGISKKIACKIYNHFHK 609
           +  IS  +A KI+N   +
Sbjct: 583 VPTISYALAEKIHNALKQ 600


>gi|269836449|ref|YP_003318677.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269785712|gb|ACZ37855.1| excinuclease ABC, C subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 609

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 200/611 (32%), Positives = 319/611 (52%), Gaps = 31/611 (5%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVTCTEV 67
            PGVY M +  G V+YVGKA +L+ R++SY  S      +   ++  I +     T T  
Sbjct: 16  APGVYLMKNARGEVIYVGKAASLRSRVRSYFGSRRGMDGKTRELVEHIADFEVIRTDTPT 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL+LE  +IKR +P++N++LRDDK++PYI IT+    P +   R        YFGP+ S
Sbjct: 76  EALILENELIKRYQPKYNVMLRDDKTYPYIRITN-EPFPRVISTRRLVNDGSRYFGPYTS 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             +V +T++ L+R F  R C   +  +  RPCL + I RC GPC G +   +Y + + + 
Sbjct: 135 ASSVHRTLDLLKRLFPYRPCDIEITGNAPRPCLYYHIGRCVGPCIGAVDQAQYAQVIDKV 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDC 244
             FL G    L   +   M  A    D+E A   RD + A+ H+      +       D 
Sbjct: 195 VLFLEGRGEELLPSMQAEMEAAAEALDFERAARIRDDIRAIKHVLEQQKIVSGTARNFDV 254

Query: 245 FSLYHN-KNLACIQTCFFHFGQNRGTCTFFLKTD-SESTNAQILSYFLRQFYTDKP-CPE 301
            ++       A +Q      G+  G+  F L+    + +  Q+LS F+ QFY D    P 
Sbjct: 255 LAVAQGPGGDAAVQVATIRNGKMLGSEYFMLRGARIDDSPGQLLSSFVTQFYQDAAMVPP 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLS 357
            ++L     + +L+     ++ G  VK+TVPK+GE+R+++E    +A  +      + L+
Sbjct: 315 ELVLQHPLADEALVREWLRERRGGTVKLTVPKRGERRQLVEMVAKSAQENLEQDRVRWLN 374

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            E      + +      L  +P+RIE +D S + G  +V  MVV  +    K+ YR+F++
Sbjct: 375 DEQRMTAAMTELADALGLEKMPRRIECFDISTLHGTHSVASMVVFEDGKPKKSDYRRFSI 434

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V  Q+D AMM+ V+ RRF +  + +             + + PD+VI+DGGKGQL+
Sbjct: 435 KG--VAGQNDFAMMQEVIRRRFKRAARED---------VTEEWRTLPDLVIVDGGKGQLN 483

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA  VL++L V   + I+ +AK  +     E F   + + +VL      L+ +QR+RDEA
Sbjct: 484 AALEVLRELGVS--VPIVGLAKENE-----ELFLPGRRDPVVLPRDAQSLFLVQRVRDEA 536

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA+T HRKRR K+   S LD + G+GP R++ LL++FG+V  I ++S E LA++ GI 
Sbjct: 537 HRFAVTFHRKRRTKSTFRSALDGLKGVGPARRKALLKTFGSVARIRQASVEELAAVPGIG 596

Query: 597 KKIACKIYNHF 607
            ++A +I    
Sbjct: 597 PRLAEQIKEEL 607


>gi|295091053|emb|CBK77160.1| excinuclease ABC, C subunit [Clostridium cf. saccharolyticum K10]
          Length = 621

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 202/620 (32%), Positives = 324/620 (52%), Gaps = 21/620 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N T +I  M+S+I    +
Sbjct: 7   ELKKLPAQPGVYIMHDDKDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEKMVSRIARFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +L+DDK++PYI +T     P +   R     +  
Sbjct: 67  ILTDSELEALVLECNLIKEHRPKYNTMLKDDKTYPYIKVTVSEAFPRILFSRTMKKDKNK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGPF S  AV+  I+ L + + +R+C+ ++ R   + RPCL + I++C GPC G IS E
Sbjct: 127 YFGPFTSSGAVKDMIDLLHKIYRIRTCSRNLPRDIGKDRPCLYYHIRQCDGPCQGFISQE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + + E   FLSG    + + +   M  A+ + ++E A  +RD L ++  I       
Sbjct: 187 DYQKQIKEVLDFLSGKYDPVTKLLTDRMYAASEEMEFEKAAEYRDLLKSVRQIAQKQKIT 246

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  ++  ++    +Q  F   G+  G   F ++  +  TN+QIL+ F++QFY 
Sbjct: 247 SQSMDDRDIIAMAKDERDVVVQVFFVRDGRLIGREHFHVEAGTAETNSQILNGFVKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  P  I   EE E+  ++      + G KVKI VPK+GEK K++E A  NA     +
Sbjct: 307 GTPFIPHEIWCQEELEDAEVISSFLSGRRGQKVKILVPKKGEKEKLVELAKKNAKMVLDQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E+     +        L  +  RIE YD S+I G  +VG M+V  +    +N
Sbjct: 367 DKEKIKREELRTTGAMNQIGGLIGLSRVR-RIEAYDISNISGFESVGSMIVYEDGRPKRN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YRKF +    V+  +D A MR VL RRFS  +   EE L         SF  +PD++++
Sbjct: 426 DYRKFRIKT--VQGPNDYASMREVLTRRFSHGLAEREEILEGGGDLSMGSFTRFPDLIMM 483

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++ A  VL++L +   I +  + K                E + ++        
Sbjct: 484 DGGRGQVNIALEVLEELGIA--IPVCGMVKDDSHRTRG---LYYNNEEVPIDRFSEGFKL 538

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DEAHRFAI  HR  R K    S LD+I GIGP R++ L++ F T++ +  +  E 
Sbjct: 539 ITRIQDEAHRFAIEYHRSLRGKTQVRSVLDDIRGIGPARRKALMRYFKTIEAVREAGVEE 598

Query: 589 LASIEGISKKIACKIYNHFH 608
           L  +  +++  A  +Y+ FH
Sbjct: 599 LLEVPQMNQAAAEAVYSFFH 618


>gi|254822013|ref|ZP_05227014.1| excinuclease ABC subunit C [Mycobacterium intracellulare ATCC
           13950]
          Length = 636

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 187/633 (29%), Positives = 302/633 (47%), Gaps = 35/633 (5%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEV 67
            PGVY+  D  GRV+YVGKA +L+ R+ SY    +    R   M++    + +TV  TEV
Sbjct: 2   EPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFSDISGLHPRTRQMVTTAAKVEWTVVNTEV 61

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL LE N IK   PRFN+  RDDKS+P + +T   + P L  +R        YFGP++ 
Sbjct: 62  EALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLMVYRGPRRKGVRYFGPYSH 121

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
             A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++ + V
Sbjct: 122 AWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVSAEQHRQIV 181

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
            +   FLSG       ++ + MN A  + D+E A   RD L AL         +      
Sbjct: 182 DDFCDFLSGKTDRFARELEQQMNAAAERLDFERAARLRDDLGALKRAMEKQAVVLGDGTD 241

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK---TDSESTNAQILSYFLRQFYTD-- 296
            D  +   +   A +Q      G+ RG   + ++      +S   Q++  FL QFY +  
Sbjct: 242 ADVVAFADDDLEAAVQVFHVRGGRVRGQRGWIVEKSADPGDSGEEQLVEQFLTQFYGEQA 301

Query: 297 ----------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
                      P P  +L+         L        G +V + VP++G+KR + E    
Sbjct: 302 ELGGAADESVNPVPREVLVPCLPSNADELTSWLSGLRGSRVVLRVPRRGDKRALAETVQR 361

Query: 347 NAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402
           NA  +  Q               L++  +   L   P RIE  D SH+ G   VG +VV 
Sbjct: 362 NAKEALQQHKLKRAGDFNARSAALQNIQEALGLSEAPLRIECVDISHVQGTDVVGSLVVF 421

Query: 403 GENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQEYSF 460
            +    K+ YR F++     + + DD A +  V  RRF++ +  + + N   P+ +   F
Sbjct: 422 EDGLPRKSDYRHFSIREAAGQGRSDDVASIAEVTRRRFARHLSEQNDPNMLSPEGKSRRF 481

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
              P++ ++DGG  Q++AA  VL+ L + + + +I +AK  +     E +   + + +++
Sbjct: 482 AYPPNLYVVDGGAPQVNAASAVLEGLGITD-VAVIGLAKRLE-----EVWVPSEPDPVIM 535

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579
                 LY +QR+RDEAHRFAI  HR +R K    S LD + G+G  R++ L+  FG++ 
Sbjct: 536 PRNSEGLYLLQRVRDEAHRFAIAYHRSKRSKRMTASVLDSVPGLGEHRRKALVSHFGSIA 595

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            +  ++ + + ++ GI    A  +        +
Sbjct: 596 RLKEATVDQITAVPGIGVATATAVLEALRPEQA 628


>gi|322833699|ref|YP_004213726.1| excinuclease ABC, C subunit [Rahnella sp. Y9602]
 gi|321168900|gb|ADW74599.1| excinuclease ABC, C subunit [Rahnella sp. Y9602]
          Length = 611

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 219/618 (35%), Positives = 331/618 (53%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D +G V+YVGKA +L+KR+ SY      + +   ++  I  I  TV
Sbjct: 12  LKTVTSQPGVYRMYDASGTVIYVGKAKDLKKRLSSYFRVQVSSRKTETLVKNIAQIDVTV 71

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 72  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADNHPRLSVHRGAKHAKGEYF 130

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+ +R+RPCL +QI RC GPC    +S E Y 
Sbjct: 131 GPFPNSYAVRETLALLQKLFPIRQCENSVYSNRSRPCLQYQIGRCLGPCVKGLVSEEDYK 190

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +        N 
Sbjct: 191 DQVEYVRLFLSGKDQQVVTQLVNRMEEASKALRFEDAGRIRDQIQAVRRVTERQFVSGNS 250

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
              D   +     +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 251 EDLDVIGVGFESGMACLHVLFIRQGKVLGSRSYFPKVPGGTDLGEVVQTFVGQFYLQGSQ 310

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E  LL  S  +  G KV+I    +G++ + ++ A  NA  + T K
Sbjct: 311 QRTLPGEILLDFSLAEKDLLADSLSELAGRKVQIQSKPRGDRARYLKLARTNASAALTTK 370

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+ + +    L +  K   L     R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 371 LAQQSTIHQRLSELAKTLNLA-EINRMECFDISHTMGEQTVASCVVFDGNGPVRSEYRRY 429

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL+RR+ + + + +                PDV+ +DGGKGQ
Sbjct: 430 NI--TGITPGDDYAAMAQVLQRRYGKTLDDNK---------------IPDVIFIDGGKGQ 472

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQ 531
           L  A  V   LNVE   ++  +I IAKG  R AG+E  FFV +GE + L    P L+ IQ
Sbjct: 473 LGMALDVFHSLNVEWDKSKPLLIGIAKGADRKAGLETLFFVPEGEGIALPADSPALHVIQ 532

Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR+RR K    S L+EI G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 533 HIRDDSHNHAITGHRQRRAKVRTTSALEEIEGVGPKRRQVLLKYMGGIQPLLNASVEEIA 592

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI+N   
Sbjct: 593 QVPGISIALAEKIHNALK 610


>gi|163847590|ref|YP_001635634.1| excinuclease ABC subunit C [Chloroflexus aurantiacus J-10-fl]
 gi|222525445|ref|YP_002569916.1| excinuclease ABC subunit C [Chloroflexus sp. Y-400-fl]
 gi|163668879|gb|ABY35245.1| excinuclease ABC, C subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222449324|gb|ACM53590.1| excinuclease ABC, C subunit [Chloroflexus sp. Y-400-fl]
          Length = 651

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 203/636 (31%), Positives = 327/636 (51%), Gaps = 39/636 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64
           +P+ PGVY   D  GR+LYVGK+  L+ R++SY     + + +   ++S I +    VT 
Sbjct: 21  VPDQPGVYLWKDANGRLLYVGKSKRLRDRMRSYFGSPRSLSGKTRRLVSHIADFDIIVTQ 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E+EALLLE N+IK+ +P +NILL+DDK++PYI +T     P ++  R        YFGP
Sbjct: 81  SELEALLLEMNLIKQHRPPYNILLKDDKTYPYIKVTVNEDWPRVFATRQVLNDGARYFGP 140

Query: 125 FASVDAVEKTINSLQRTFFLR------SCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           +AS  +V + ++ L R F  R          +  R   +PCL +Q++RC GPC   + ++
Sbjct: 141 YASPGSVYQALDVLNRLFAFRPPYECKDDKFNRHRKLGKPCLYYQMRRCLGPCVPGLVTK 200

Query: 179 KYMEFVHE-AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           +      +   +FL G +  +  ++   M QA  + ++E A   RDR+ A+  I      
Sbjct: 201 EAYRQAIDAVCRFLEGKSDQIVRELRAQMEQAAEQLEFERAAYLRDRIQAIEKISERQQV 260

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
              +    D  +    +  A +Q  F   G+      F L+     ++  +L+ FL QFY
Sbjct: 261 LRTVDTDQDVIAFAREEGSAVVQVLFIRGGKLINAEPFTLQGTEGESDEALLTSFLTQFY 320

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
            D P  P N+LL++  EE  ++     ++ G++V+ITVP++GEKR+++E A  NA +   
Sbjct: 321 QDAPNIPPNLLLADHVEEPMIIASWLQQKSGHRVEITVPRRGEKRQLVELAANNARQKLR 380

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
               Q L++E      L +      LP +P RIE YD S+I G  +V  MVV        
Sbjct: 381 EIREQWLNSEQRAVAALSELRDLLELPALPHRIECYDVSNIQGQHSVASMVVFERGSPRP 440

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIK-----------------NEENLNFH 452
             YR+F +    V   +D A +  V+ RRF +  +                         
Sbjct: 441 AHYRRFKIKT--VSGANDVASLHEVISRRFRRAAEALGETQTVTGMVADDDNKTSETGNT 498

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
            ++   S+   PD++++DGG+ Q++AA   L+ L    +I ++ +AKGP R+        
Sbjct: 499 DQQALESWAELPDLLLVDGGQAQVAAASAALRDLGFT-QIPVVGVAKGPDRNRFD--LIR 555

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLL 571
              E LVL      L  IQR+ +EAHRFAIT HRK R KA   S L++I GIGP RKR L
Sbjct: 556 LDCEPLVLARDSKALALIQRIDEEAHRFAITYHRKLRSKATLRSSLEDIPGIGPKRKRAL 615

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L++FG++  I ++S + LA++ G+++K A ++ +  
Sbjct: 616 LKAFGSLDAIRQASIDELAAVPGMTRKAAEELKSLL 651


>gi|330838470|ref|YP_004413050.1| UvrABC system protein C [Selenomonas sputigena ATCC 35185]
 gi|329746234|gb|AEB99590.1| UvrABC system protein C [Selenomonas sputigena ATCC 35185]
          Length = 607

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 203/611 (33%), Positives = 318/611 (52%), Gaps = 35/611 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVTC 64
           +P+ PGVY M D  GR++YVGKA  L+ R++ Y  S  H   ++  M+++I +    +T 
Sbjct: 12  LPDSPGVYIMKDAKGRIIYVGKAVVLKNRVRQYFQSGKHQAPKVRAMVAKIADFETILTH 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +EVEAL+LE N+IK+ +PR+NI L+DDKS+PY+ +T   + P +   R  +     YFGP
Sbjct: 72  SEVEALILECNLIKKHRPRYNISLKDDKSYPYLKVTLADEYPRVVVTRRVTKDGSRYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  A+ +++  L+R F LR+C +       RPCL + IKRC  PC   +  E+Y   +
Sbjct: 132 YTSAGAMHESVKLLKRLFPLRTCKNMKVE---RPCLEYHIKRCLAPCCEPVDKEEYGAMI 188

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242
            E   FL G    ++++++R M +A    D+E A   RD++AA+  +    + +      
Sbjct: 189 REVCLFLEGRTEQVEKELSRRMTEAAEDYDFERAARLRDQIAAVRKVAEKQNIVTGSGDQ 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPE 301
           D   +  +   A +       G+  G   F L    E T+  +L+ FL+Q+Y      P 
Sbjct: 249 DAIGMARSGLGAVVMVFLIRAGKMVGREHFLLSGSEEETDEALLTAFLKQYYHRAAFVPR 308

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST--- 358
            ILL    EET LLE    ++ G KV + VP++G K  ++E A  NA +  T + +    
Sbjct: 309 EILLPFPIEETELLEGWLAERKGAKVALAVPQRGTKHDVVEMARSNAEKYLTDEAARIEQ 368

Query: 359 -EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                   +++  +   L   P R+E +D SH  G   V  MVV       K+ YR+F +
Sbjct: 369 ANDQTLGAVRELGRYLGLKEEPMRMECFDISHNQGSETVASMVVFEGGLPKKSDYRRFKI 428

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
              +    DD   MR V ERR+++L ++E                 PD++I+DGGKGQLS
Sbjct: 429 RSAEG-KPDDFLSMREVTERRYTKLAEDE----------------MPDLIIIDGGKGQLS 471

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           +A  +++       + ++ +AK  +       F     + ++L  R   LY I+R+RDEA
Sbjct: 472 SALEIIRGAG-HLTVPVVGLAKQFE-----YIFTEGSSDPVILPRRSQALYLIERIRDEA 525

Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HRK R K+   S LD I GIGP R++ L   FGT+  I  +S E LA+++G++
Sbjct: 526 HRFAITYHRKLRGKRNLVSVLDHIAGIGPKRRKALWNHFGTIAKIKAASVEELAAVDGMT 585

Query: 597 KKIACKIYNHF 607
              A  + N F
Sbjct: 586 LPAAEAVKNFF 596


>gi|319786926|ref|YP_004146401.1| excinuclease ABC subunit C [Pseudoxanthomonas suwonensis 11-1]
 gi|317465438|gb|ADV27170.1| excinuclease ABC, C subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 626

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/606 (37%), Positives = 347/606 (57%), Gaps = 12/606 (1%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +   PGVY+M    G +LYVGKA  L++R+ SY  +   + RI  M++QI  +  TVT T
Sbjct: 18  LSTAPGVYRMYAADGSLLYVGKAGALKRRVASYFSNTPKSPRIHSMVAQIARMEVTVTRT 77

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T + + P L  HR    + G YFGP+
Sbjct: 78  EAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REEWPRLAFHRGPRAVPGRYFGPY 136

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
           AS  AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC   ++++ Y E V 
Sbjct: 137 ASASAVRETMNLMHKLFRLRSCEDSVFRNRSRPCLQYQIGRCSAPCVDLVAADDYAESVR 196

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMD 243
            A  FL G +  L ++++  M +A    ++E A   RD LA L  +Q       +   +D
Sbjct: 197 RASLFLEGRSDELGKELSAAMEKAGQALEFEEAARLRDLLAQLRGMQARQYVDGHAANLD 256

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
             +     + AC+    F  G+N GT  FF +T+ E +  ++L+ F+ Q+Y ++P P  I
Sbjct: 257 VIACEMQGSHACVLLLAFRDGRNLGTRAFFPRTNGEDSAEEVLAAFVSQYYAEQPAPPEI 316

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +L     +  L+E++  +  G KV +    +GE+   +E A  NA  +   ++++  + Q
Sbjct: 317 VLDRAIPDADLIELALAEGAGRKVVLKSSVRGERAGYLELARRNAKVALASEMASRNAQQ 376

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
           +      +   L   P R+E +D SH +G + V   VV    G V+NQYR++N+  + ++
Sbjct: 377 LRSDALRELLGLEEAPSRVECFDISHTLGEATVASCVVFDPAGPVRNQYRRYNI--SGIE 434

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A MR  +ERRF + ++ E  +         +    PDV+++DGG GQL+ A+ VL
Sbjct: 435 PGDDYAAMRQAIERRFRRAMEAEAGVA-----PPGANSVLPDVLLIDGGAGQLAQAREVL 489

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
             L VEN + ++ +AKG +R AG E      G  +      P L FIQ++RDEAHRFAIT
Sbjct: 490 ADLGVEN-VLLVGVAKGEQRRAGDETLVFPDGREVRPGAASPALQFIQQVRDEAHRFAIT 548

Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR RR+KA  S  L++I GIGP R+  LL+ FG +  +  +  E +A +EGI+  +A +
Sbjct: 549 GHRGRRQKARTSSRLEDIPGIGPRRRAALLKHFGGLGGLKAAGEEEIARVEGINAALATR 608

Query: 603 IYNHFH 608
           IY   H
Sbjct: 609 IYATLH 614


>gi|54295483|ref|YP_127898.1| hypothetical protein lpl2570 [Legionella pneumophila str. Lens]
 gi|81367729|sp|Q5WTF5|UVRC_LEGPL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|53755315|emb|CAH16811.1| hypothetical protein lpl2570 [Legionella pneumophila str. Lens]
          Length = 618

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 220/621 (35%), Positives = 339/621 (54%), Gaps = 34/621 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PG+Y+MLD  G VLYVGKA NL+KR+ SY    N   +   ++SQI +I  +VT 
Sbjct: 16  KLPSEPGIYRMLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTR 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE+N+IK L+P++N+LLRDDKS+PYI +++    P +  +R       G++FG
Sbjct: 76  SETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRVELYRSKKKPPSGNFFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+  V AV +TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC   IS E Y   
Sbjct: 136 PYPGVAAVRETIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLS 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
           V +A +FL G    + +++A  M  A  + ++E A + RD++  L  IQ     +     
Sbjct: 196 VEDAIRFLQGKCQIILDELAERMKNAVSQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGD 255

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292
            D  ++      ACIQ      GQ   + +FF        + +             F+  
Sbjct: 256 ADVIAIEVRPGFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFIGF 315

Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           +Y D     P+ I+ ++   E+  LE    ++ G   KI V  +G K + ++ A+ N   
Sbjct: 316 YYLDTSERIPDLIITNQSITESRSLEYILSQRRGKSCKIQVNPRGVKSRWMDFAVNNLRI 375

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           S  + +S   + +   +   +  AL    +R+E +D SH  G + V   VV    G   +
Sbjct: 376 SVAEYVSKHSTIRSRYQALRQLLALDKNIERMECFDISHTQGEATVASCVVFDTEGPRPS 435

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YR+FN+    +   DD A M   + RRF +LI                    PDV+I+D
Sbjct: 436 EYRRFNIEG--ITPGDDYAAMEQAVTRRFKRLI---------------GAQLLPDVLIID 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529
           GGKGQ+S  + VL  L VE+ IT++ ++KGP R AG EK   V +    VL      L+ 
Sbjct: 479 GGKGQVSIVKRVLTSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHL 537

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q +RDEAHRFAIT HRK+R+K    S L+ I G+G  R++ LLQ FG ++ ++++S E 
Sbjct: 538 LQHIRDEAHRFAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKASLEE 597

Query: 589 LASIEGISKKIACKIYNHFHK 609
           +  ++GIS+++A +IY HFH 
Sbjct: 598 ICKVQGISEQLAKRIYEHFHP 618


>gi|37525944|ref|NP_929288.1| excinuclease ABC subunit C [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81419566|sp|Q7N5C7|UVRC_PHOLL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|36785373|emb|CAE14320.1| excinuclease ABC subunit C [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 610

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/618 (34%), Positives = 340/618 (55%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D +G V+YVGKA +L+KR+ SY  +   + +   ++  I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDTSGTVIYVGKAKDLKKRLASYFRAQVTSRKTESLVKNIVQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++   K P L  +R +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-ADKHPRLAMYRGAKHFKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +++  LQ+ F +R C DSV+R+R+RPCL +QI RC GPC    +S ++Y 
Sbjct: 130 GPFPNTHAVRESLILLQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLGPCVKGLVSEDEYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
           + V   + FLSG +  +  ++   M QA+ +  +E A  +RD++ A+  +          
Sbjct: 190 QQVDYIRLFLSGKDQQVLTRLIERMEQASQQLKFEDAARYRDQIQAVRQVTERQFVSGTD 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
           + +D  S+  +  +AC+   F   G+  G+ +++ K  + +T  +I+  FL QFY     
Sbjct: 250 DDLDVISVAFDAGMACLHVLFIRQGKVLGSRSYYPKIPTGTTLDEIVQTFLGQFYLQGSQ 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           ++  P  ILL     E  +L  S  +  G K+ I    +G+K + ++ A  NA  + + +
Sbjct: 310 NRTLPSEILLDFTLPEKDILSDSLSEISGRKIHIQTRPRGDKARYLKLARTNATIALSTR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L   TK   L    +R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTIHQRLDSLTKLVKLA-KIQRMECFDISHTMGEQTVASCVVFDSNGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL RR+ + +   +                PD++ +DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMNQVLRRRYGKALDESK---------------IPDIIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A  V + L+VE    R  +I +AKG  R AG+E  F   + +++ L    P L+ IQ
Sbjct: 472 LAQAIDVFQSLDVEWDKTRPQLIGVAKGSDRKAGLETLFFATEDKSIALPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHNHAITGHRQRRSKVRNTSTLESIEGVGPKRRQMLLKYMGGLQPLRNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            +  IS  +A KIYN   
Sbjct: 592 KVPTISYALAEKIYNALK 609


>gi|169629868|ref|YP_001703517.1| UvrABC system protein C UvrC [Mycobacterium abscessus ATCC 19977]
 gi|229558453|sp|B1MC92|UVRC_MYCA9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|169241835|emb|CAM62863.1| UvrABC system protein C UvrC [Mycobacterium abscessus]
          Length = 671

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 188/643 (29%), Positives = 313/643 (48%), Gaps = 37/643 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY         R   M++   ++ +TV 
Sbjct: 13  SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADITGLHPRTRQMVTTAGSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P + +T   + P L+ +R        YFG
Sbjct: 73  GTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEYPRLFVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C++ VF+      RPCLL  I++CS PC G +S++++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSNGVFKRHKQIDRPCLLGYIEKCSAPCIGRVSAQEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V +   FLSG    L   + R MNQA  + ++E A   RD ++AL         ++ 
Sbjct: 193 REIVLDFCDFLSGKTDRLARDMEREMNQAAQELNFERAARLRDNISALQRALERQTVVFG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL---SYFLRQFY 294
                D  +   ++  A +Q      G+ RG   + ++   +  ++ +      FL QFY
Sbjct: 253 DGTDADVVAFSDDELEAAVQVFHVRGGRVRGQRGWIVEKTGDPGDSDLQGLVEQFLTQFY 312

Query: 295 TDK--------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340
            D+              P P  +L+     +   +        G +V + VP++G+K+ +
Sbjct: 313 GDQADLVYAADTEADVAPVPREVLVPVLPRDAEGMTSWLTGLRGSRVSLRVPQRGDKKAL 372

Query: 341 IEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396
            E    NA  +  Q          +    L++      L   P RIE  D SH+ G   V
Sbjct: 373 AETVERNAKEALAQHKLKRAGDLTTRSAALQELQDALGLEQAPLRIECIDISHVQGTDVV 432

Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEEN-LNFHPK 454
             +VV  +    ++ YR +++       + DD A +  V  RRF++ +++++    +  +
Sbjct: 433 ASLVVFEDGLSRRSDYRHYSIREAAGDGRSDDVASIAEVTRRRFARHVQDQQAVTEYAAE 492

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
                F   P++ ++DGG  Q++AA   L +L V + + +I +AK  +     E +   +
Sbjct: 493 GHSRKFAYPPNLFVVDGGAPQVNAAAAELSELGVTD-VAVIGLAKRLE-----EVWVPGE 546

Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQ 573
            + ++L      LY +QR+RDEAHRFAIT HR +R  +   S LD I G+G  R+  L+ 
Sbjct: 547 PDPVILPRTSEALYLLQRVRDEAHRFAITFHRSKRSRRMTASVLDGIPGLGEARRAALVS 606

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
            FG+V  + ++S E + ++ GI    A  +     +  S  P+
Sbjct: 607 HFGSVAQLKKASVEEITAVPGIGAATAVAVREALIETDSSAPS 649


>gi|161760580|ref|YP_070262.2| excinuclease ABC subunit C [Yersinia pseudotuberculosis IP 32953]
 gi|186895180|ref|YP_001872292.1| excinuclease ABC subunit C [Yersinia pseudotuberculosis PB1/+]
 gi|186698206|gb|ACC88835.1| excinuclease ABC, C subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 617

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  +     +   ++  I  I  TV
Sbjct: 18  LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 77

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 78  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 136

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y 
Sbjct: 137 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 196

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   + FLSG +  +  ++   M +A+ +  +E A   RD++ A+  +        + 
Sbjct: 197 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 256

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
              D   +  +  LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY     
Sbjct: 257 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 316

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +
Sbjct: 317 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 376

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    +K+  K   L     R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 377 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 435

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL+RR+ + + +++                PDV+ +DGGKGQ
Sbjct: 436 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQ 478

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           LS A  V   LNV   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 479 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQ 538

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR+RR K    S L+ I G+GP R++ LL+  G ++ +  +S E +A
Sbjct: 539 HIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQALLKYMGGLQPLFNASVEEIA 598

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KI+N   
Sbjct: 599 KVPGISQALAEKIHNALK 616


>gi|254468782|ref|ZP_05082188.1| excinuclease ABC, C subunit [beta proteobacterium KB13]
 gi|207087592|gb|EDZ64875.1| excinuclease ABC, C subunit [beta proteobacterium KB13]
          Length = 598

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 226/610 (37%), Positives = 333/610 (54%), Gaps = 25/610 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PG+Y+M+D   +V+YVGKA NL+KR+ SY + N  + R   MIS I +I++TVT
Sbjct: 9   KTLPTHPGIYRMVDAKDKVIYVGKAKNLKKRVASYFNKNIPSPRTRLMISHIQSIQYTVT 68

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EAL+LE N+IK L PR+N++ RDDKS+PY+++T  H  P L  HR        YFG
Sbjct: 69  NTEAEALILENNLIKELMPRYNVIFRDDKSYPYLMMT-SHAFPMLKFHRGVQKKGNKYFG 127

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PF + +AV ++I  LQ+ F LR+C DS F +R RPCL  QIKRC+ PC   I  + Y E 
Sbjct: 128 PFPNSNAVRESIQLLQKVFLLRNCDDSTFNNRVRPCLQHQIKRCTAPCVKLIDQKSYAED 187

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---N 240
             +A+ FL G ++ + E++  +MN A   E+YE A + RDR+ +L  ++          N
Sbjct: 188 CRQAELFLQGKDNEVVEQMTEHMNIAAENEEYERAAVFRDRIQSLRQVRLKQFVSDFSEN 247

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D  +L     + CI       G++ G  TFF K  S+ + +     FL Q Y ++  P
Sbjct: 248 DADIIALAEESGMVCINLVMIRGGRHLGDKTFFPKNASD-SESNFTEIFLCQHYDEQIPP 306

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             I+     ++  +      K    K KI     G+KR  ++ A  NA  +  QK   E 
Sbjct: 307 PVIVTEGIFDKDLVNSFFKLKFPDKKFKIISKATGDKRMWLKMAKRNAMINVRQKNLLES 366

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
                ++   K   +P +  RIE +D SH MG   +   VV  + G    +YR+FN++  
Sbjct: 367 GKADKIESLRKLLNMPDLN-RIECFDISHTMGNQTIASCVVYDDLGMQNKEYRRFNIND- 424

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A M  VLERR  ++I  E+              + PD++++DGGKGQL  A 
Sbjct: 425 -ITPGDDYAAMYQVLERRVKRIINEEQ--------------TKPDMMLIDGGKGQLKMAL 469

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV-LNMRDPILYFIQRLRDEAHR 539
            V  K NV   I ++SIAKG  R +G+E   +  GE L  +   +   + +Q +RDEAHR
Sbjct: 470 EVFDKYNVVG-IRLVSIAKGEGRKSGLESLILDDGEVLSDIPKNNIGFHLMQHIRDEAHR 528

Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR++R K    S L+EI GIGP +++ LL  FG +  I  +S E L+ + GI +K
Sbjct: 529 FAITGHRQKRAKTNLSSSLEEIEGIGPKKRKALLVYFGGLDGIRNASVEELSQVTGIDQK 588

Query: 599 IACKIYNHFH 608
           +A  +YN +H
Sbjct: 589 LAEIVYNFYH 598


>gi|297195043|ref|ZP_06912441.1| UvrABC system protein C [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721566|gb|EDY65474.1| UvrABC system protein C [Streptomyces pristinaespiralis ATCC 25486]
          Length = 688

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 185/641 (28%), Positives = 314/641 (48%), Gaps = 35/641 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+P+ PGVY+  D   RV+YVGKA +L++R+ SY     N   R   M++   ++ +
Sbjct: 37  KPGQIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLASYFQDLANLHPRTRTMVTTAASVEW 96

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      
Sbjct: 97  TVVSTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKRKGVR 156

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ + R F +R+C+  VFR+   + RPCLL  I +CS PC G ++ 
Sbjct: 157 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFRNHVQKGRPCLLGYIGKCSAPCVGRVTP 216

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E   E   F++G       ++ + M  A  + +YE A   RD + AL      N  
Sbjct: 217 EEHRELAEEFCDFMAGRTGTYIRRLEKQMMAAAEEMEYEKAARLRDDIGALKRALEKNAV 276

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  +L  ++  A +Q      G+ RG   +          A ++ + L+Q Y
Sbjct: 277 VLADATDADLIALAEDELEAAVQIFHVRGGRVRGQRGWVTDKVENVDTAGLVEHALQQLY 336

Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    E+T  +      + G  V + VP++G+K+ ++E    NA ++
Sbjct: 337 GEESGDAVPKEVLVPALPEDTGAVTEWLTGRRGAAVSLRVPQRGDKKALMETVERNALQA 396

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P RIE +D SH+ G   V  MVV  +   
Sbjct: 397 LGLHKTKRASDLTTRSRALEEIAEALGLDSAPLRIECFDISHLQGEDVVASMVVFEDGLA 456

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF------------HPKK 455
            K++YR+F +     + QDD   M  V+ RRF + +  ++                    
Sbjct: 457 RKSEYRRFQIKG--FEGQDDVRSMHEVITRRFKRYLAEKDRTGEWIGGDDPVHEALEDDG 514

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
           +   F   P +V++DGG+ Q++AA+  L +L +++ + +  +AK  +     E +   + 
Sbjct: 515 RPKKFAYPPQLVVVDGGQPQVAAAKRALDELGIDD-VAVCGLAKRLE-----EVWLPHED 568

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQS 574
           + +VL      LY +QR+RD AH FAI   R +R K    SPLD + G+G  RK+ L++ 
Sbjct: 569 DPVVLPRSSEGLYLLQRVRDTAHDFAIRYQRSKRSKRIRTSPLDAVPGLGETRKQALIKH 628

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           FG+VK + +++ E +  + G+ +K A  +     +     P
Sbjct: 629 FGSVKRLRQATIEQICEVPGMGRKTAESVVVALAQTAPPAP 669


>gi|197285380|ref|YP_002151252.1| excinuclease ABC subunit C [Proteus mirabilis HI4320]
 gi|227355814|ref|ZP_03840207.1| exinuclease UvrC [Proteus mirabilis ATCC 29906]
 gi|229558455|sp|B4EXV4|UVRC_PROMH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194682867|emb|CAR43195.1| UvrABC system protein C (excinuclease ABC subunit C) [Proteus
           mirabilis HI4320]
 gi|227164133|gb|EEI49030.1| exinuclease UvrC [Proteus mirabilis ATCC 29906]
          Length = 610

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 211/616 (34%), Positives = 339/616 (55%), Gaps = 31/616 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++   PGVY+M D +G V+YVGKA +L+KR+ SY  +  ++ +   ++  I NI  TVT 
Sbjct: 13  RVTSQPGVYRMYDASGTVIYVGKAKDLKKRLSSYFRAQVNSRKTEALVKCIANIDVTVTH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE + I+R +PR+N+LLRDDKS+PYI ++   K P L  +R +   +G YFGP
Sbjct: 73  TETEALLLEHSYIQRYQPRYNVLLRDDKSYPYIYLS-ADKHPRLASYRGAKHAKGEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           F +  AV +T+  +Q+ F +R C DSV+R+R+RPCL +QI RC  PC    +S E+Y + 
Sbjct: 132 FPNSLAVRETLALMQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLAPCVKGYVSDEEYAQQ 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
           V+  + FLSG +  + E + + M +A+    +E A   RD++ A+  +          + 
Sbjct: 192 VNYVRLFLSGDDSQVIEGLIKRMEEASQALRFEEAARIRDQIHAVRQVTEKQFVANIGDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297
           +D  S+  N  +AC+   FF  G+  G+ ++F K  + ++  +++  F+ QFY      +
Sbjct: 252 LDVISVAFNGAIACVYVLFFRQGKVLGSRSYFPKVPANTSLDEVVQTFIGQFYLQGSAIR 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  ILL    E+ ++L  S     G K+ I    +G++ + ++ A  NA  +   K  
Sbjct: 312 TLPTEILLDFNLEDKTILAESISSIAGRKIHIQTKPRGDRARYLKLARTNAATALATKQV 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + +             +  I  R+E +D SH MG   V   VV   NG +K++YR++N+
Sbjct: 372 EQSTISQRYNSLMSLLEMKEIK-RMECFDISHTMGEQTVASCVVFDMNGPLKSEYRRYNI 430

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
             + +   DD A M  VL RR+ + ++  +                PD++ +DGGKGQL+
Sbjct: 431 --SGITPGDDYAAMNQVLTRRYGKSLEESK---------------IPDIIFIDGGKGQLA 473

Query: 478 AAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRL 533
            A  V + L+V+   +   +I +AKG  R AG+E  F   +GE + L    P L+ IQ +
Sbjct: 474 QAIDVFQSLDVDWDKSHPKLIGVAKGSDRKAGLETLFFKPEGEGVALPSDSPALHLIQHI 533

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HR AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A +
Sbjct: 534 RDESHRHAITGHRQRRAKVKNTSSLESIEGVGPKRRQMLLKYMGGLQALRDASVEEIAKV 593

Query: 593 EGISKKIACKIYNHFH 608
             IS  +A KI+N   
Sbjct: 594 PTISTALAEKIFNALK 609


>gi|85373328|ref|YP_457390.1| excinuclease ABC subunit C [Erythrobacter litoralis HTCC2594]
 gi|84786411|gb|ABC62593.1| excinuclease complex nuclease subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 696

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 260/646 (40%), Positives = 364/646 (56%), Gaps = 49/646 (7%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+MLD  G VLYVGKA +L+ R+ +Y   +N + R+  M+SQ   +    T +E E
Sbjct: 51  KPGVYRMLDARGDVLYVGKARSLKARVANYTQVSNLSGRLQRMVSQTRGMEIVTTNSEAE 110

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLEA +IKR +P FN+LLRDDKSFP+IL+   H  P + KHR +   +G+Y+GPFAS 
Sbjct: 111 ALLLEAQLIKRYRPPFNVLLRDDKSFPFILLRADHDFPRIMKHRGARRAKGNYYGPFASA 170

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +V  TIN+LQ+ F LRSC DS F +R RPCLL+QIKRCS PC G I  E Y E V EAK
Sbjct: 171 GSVNTTINALQKLFLLRSCTDSFFSNRDRPCLLYQIKRCSAPCVGRIDEEGYAELVREAK 230

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCF 245
            FL G +  ++ KI R M +A    D+E+A I RDRL A + IQ             D F
Sbjct: 231 DFLGGKSDAVQRKIERQMARAAEDLDFETAAILRDRLRAATFIQGSQAINASGVGDADVF 290

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           +L H      +Q  F   GQN G   FF     +    Q+LS  + QFY + P P  +L+
Sbjct: 291 ALAHKNGQIAVQAFFIRGGQNWGHRAFFPTHTKDVEEPQVLSNVILQFYEEVPPPPTVLV 350

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
             E  E+ L+E +  +  G KV++++P++G++RK+++QA  NA  +  ++L+   +   +
Sbjct: 351 DRELPESELIEAALSELAGKKVQLSIPQRGDRRKLMQQASRNATEALDRRLAERGTQAKL 410

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            ++  +   L   P+RIE+YDNSHI G  AVG MVV G  GF+KNQYRKFN+      + 
Sbjct: 411 NRELAEFLELDAPPERIEVYDNSHIQGAKAVGAMVVAGPEGFIKNQYRKFNIREAQ--SN 468

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFH--------------------------------- 452
           DD  MMR V+ RRF +L + E                                       
Sbjct: 469 DDFGMMREVMRRRFRKLAEGEGPYEEDLSTRARTASSAAARDERDGAADTVRPEQRSSEA 528

Query: 453 --------PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR- 503
                     K++     WPD+V++DGGKGQ+S+ +  L ++ +E+ + +++IAKGP   
Sbjct: 529 KRSRERGSRGKKDTHETIWPDLVLIDGGKGQMSSVRDTLAEMGIED-VPLVAIAKGPDHG 587

Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEING 562
             G E F    G    L +  P+L+ +QRLRDE HR+AI  HR +R +A   SPLDEI G
Sbjct: 588 REGREVFHFPDGREKTLPVNSPLLFHLQRLRDEVHRYAIGAHRAKRSRAITASPLDEIPG 647

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           IGP RKR LL  FGT   +  ++ E L    G+S  +A K+Y+ +H
Sbjct: 648 IGPARKRALLLHFGTASKVRAAALEDLQRAPGVSNAVARKVYDFYH 693


>gi|332161394|ref|YP_004297971.1| excinuclease ABC subunit C [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605329|emb|CBY26827.1| excinuclease ABC subunit C [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665624|gb|ADZ42268.1| excinuclease ABC subunit C [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 610

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 216/618 (34%), Positives = 338/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  ++  + +   ++  I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDKAGTVIYVGKAKDLKKRLTSYFRAHVASRKTETLVKNIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++   K P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADKHPRLAIHRGAKHEKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y 
Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVPGLVSEEEYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +        + 
Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLISRMEEASRSLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
              D   +  +  LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY     
Sbjct: 250 EDLDVIGVAFDAGLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +
Sbjct: 310 VRTLPGEILLDFTLAEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    +K+  K   L     R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 370 LSQQSTIHQRMKELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL+RR+ + + +++                PDV+ +DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           LS A  V   LNV   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAITGHRQRRSKVKNTSALELIEGVGPKRRQILLKYMGGLQPLLNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            +  IS+ +A KIYN   
Sbjct: 592 KVPSISQALAEKIYNALK 609


>gi|149366188|ref|ZP_01888223.1| excinuclease ABC subunit C [Yersinia pestis CA88-4125]
 gi|153949922|ref|YP_001401221.1| excinuclease ABC subunit C [Yersinia pseudotuberculosis IP 31758]
 gi|167401139|ref|ZP_02306642.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|229896315|ref|ZP_04511485.1| excinuclease ABC subunit C [Yersinia pestis Pestoides A]
 gi|229897252|ref|ZP_04512408.1| excinuclease ABC subunit C [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897980|ref|ZP_04513131.1| excinuclease ABC subunit C [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902790|ref|ZP_04517907.1| excinuclease ABC subunit C [Yersinia pestis Nepal516]
 gi|21264113|sp|Q8ZF52|UVRC_YERPE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367862|sp|Q1C8L1|UVRC_YERPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367863|sp|Q1CHE4|UVRC_YERPN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038131|sp|A7FIZ3|UVRC_YERP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|115347596|emb|CAL20506.1| excinuclease ABC subunit C [Yersinia pestis CO92]
 gi|149292601|gb|EDM42675.1| excinuclease ABC subunit C [Yersinia pestis CA88-4125]
 gi|152961417|gb|ABS48878.1| UvrABC system, C protein [Yersinia pseudotuberculosis IP 31758]
 gi|167049528|gb|EDR60936.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|229680237|gb|EEO76336.1| excinuclease ABC subunit C [Yersinia pestis Nepal516]
 gi|229689021|gb|EEO81086.1| excinuclease ABC subunit C [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693589|gb|EEO83638.1| excinuclease ABC subunit C [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701238|gb|EEO89267.1| excinuclease ABC subunit C [Yersinia pestis Pestoides A]
 gi|320015392|gb|ADV98963.1| excinuclease ABC subunit C [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 610

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/618 (34%), Positives = 337/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  +     +   ++  I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y 
Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   + FLSG +  +  ++   M +A+ +  +E A   RD++ A+  +        + 
Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
              D   +  +  LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY     
Sbjct: 250 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +
Sbjct: 310 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    +K+  K   L     R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 370 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL+RR+ + + +++                PDV+ +DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           LS A  V   LNV   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQVLLKYMGGLQPLFNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KI+N   
Sbjct: 592 KVPGISQALAEKIHNALK 609


>gi|119774745|ref|YP_927485.1| excinuclease ABC subunit C [Shewanella amazonensis SB2B]
 gi|119767245|gb|ABL99815.1| Excinuclease ABC subunit C [Shewanella amazonensis SB2B]
          Length = 606

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 206/616 (33%), Positives = 325/616 (52%), Gaps = 28/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +    GVY+M D A  V+YVGKA +L+KR+ SY  +N    +   ++S I NI  T+
Sbjct: 8   LKTVSSASGVYRMYDAAAEVIYVGKAKDLKKRLSSYFRTNLPNIKTQALVSNIANIDVTL 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE + IK+  P++N+LLRDDKS+PYIL++  HK P L  HR +   +G YF
Sbjct: 68  THSETEALILENDYIKQYMPKYNVLLRDDKSYPYILLS-GHKHPRLAYHRGAQREKGEYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV +++N +Q+ F +R C D+ +R R+RPCL +QI RCS PC G+IS E Y E
Sbjct: 127 GPYPNGGAVRESLNLMQKLFPIRQCEDAYYRARSRPCLQYQIGRCSAPCVGKISDEDYDE 186

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240
            V  A  FL G +  +   +   M  A L  +YE+A  +RD++ AL  +    +      
Sbjct: 187 QVRLATLFLRGKDQQVIASLVGKMEAAALAMEYEAAARYRDQIQALRKVAEQQNVSGQQG 246

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-- 298
            MD   + +   +AC    F   G+  G+ ++F      +   ++L  F+ QFY      
Sbjct: 247 DMDVIGVNYASGIACFHILFIREGKIFGSRSYFPAVPDATELGEVLRAFMLQFYLGNEAH 306

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ +LL EE E+   LE +     G++++I    + ++   +  A  NA  +   KL
Sbjct: 307 RSIPKEVLLGEEFEDLHELEAAMQDSLGHRLEIKTKVRADRAAFLRLANTNAANAVVTKL 366

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + + + +  ++   +   L    +R+E +D SH MG S V   VV    G  K +YR++N
Sbjct: 367 AHKSTVEQRMELLEEVLGLGAPIQRMECFDISHTMGESTVASCVVFNREGPNKGEYRRYN 426

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M   L RRF ++                     PDV+ +DGG GQL
Sbjct: 427 I--SGITGGDDYAAMAQALSRRFDKI---------------ERTGKVPDVLFIDGGLGQL 469

Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533
            AA  ++      ++ +  ++ +AKG  R  G+E       E    L   +P L+ IQ +
Sbjct: 470 RAAMTIVNDKFAELDRQPLLVGVAKGESRKPGLETLIFGGSEAEFSLESDNPALHLIQHI 529

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR +R++    S L+ I GIGP R++ LLQ  G ++ +  +S   LA +
Sbjct: 530 RDESHRFAITGHRAKRQQTRNTSTLESIPGIGPKRRKALLQYLGGLQQVKNASVAELAKV 589

Query: 593 EGISKKIACKIYNHFH 608
            GIS ++A  I++   
Sbjct: 590 PGISAEMAQTIHDALR 605


>gi|163741903|ref|ZP_02149293.1| excinuclease ABC subunit C [Phaeobacter gallaeciensis 2.10]
 gi|161385076|gb|EDQ09455.1| excinuclease ABC subunit C [Phaeobacter gallaeciensis 2.10]
          Length = 581

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 251/589 (42%), Positives = 368/589 (62%), Gaps = 15/589 (2%)

Query: 24  YVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPR 83
           YVGKA NL+ R+ +Y     H+ RI  MI+   ++ F  T TE EALLLE N+IK+LKP+
Sbjct: 1   YVGKARNLRARVSNY-SRPGHSPRIERMIAATASMMFLTTRTETEALLLEQNLIKQLKPK 59

Query: 84  FNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFF 143
           +N+LLRDDKSFP IL+   H  P + KHR +   +GSYFGPFAS  AV +T+N LQ+ F 
Sbjct: 60  YNVLLRDDKSFPNILVAKDHAFPQIKKHRGTRREKGSYFGPFASAGAVNRTLNQLQKAFL 119

Query: 144 LRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIA 203
           LR+C +++F  RTRPCL +QIKRC+ PCTGEIS+E Y   V +A++FLSG +  ++E++A
Sbjct: 120 LRNCTNAMFESRTRPCLQYQIKRCTAPCTGEISAEDYASSVRDAERFLSGRSTKIQEELA 179

Query: 204 RNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCF 260
             M  A+   ++E A   RDR+ AL+ +Q             D   L+ +   AC+Q  F
Sbjct: 180 EQMAAASEAMEFERAAALRDRIKALTQVQTSQGINPRGVAEADVIGLHLDSGQACVQVFF 239

Query: 261 FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF 320
               QN G   F+ + + + + A+++  F+ QFY +K  P  ++LS+E E   L+E +  
Sbjct: 240 IRANQNWGNQDFYPRINGDVSPAEVMEAFIGQFYDNKEPPRQLILSDEIENGDLMEQALS 299

Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380
            + G +V+I VP++GEK +++  A+ NA  S  ++++   +   +L+   + F L   P+
Sbjct: 300 DKAGRRVEILVPQRGEKTELVAGAVRNARESLARRMAESATQAKLLRGVAEAFGLEGPPQ 359

Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFS 440
           RIE+YDNSHI G  AVG M+V G  GF+KN YRKFN+  +D+   DD  MM+ VL RRFS
Sbjct: 360 RIEVYDNSHIQGSHAVGGMIVAGPEGFMKNAYRKFNIRGDDLTPGDDFGMMKEVLNRRFS 419

Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
           +L+K +          +     WPD++++DGG GQ+SA   ++ +  V++ I +I +AKG
Sbjct: 420 RLLKED---------PDREKGLWPDLLLIDGGAGQVSAVAEIMAEHGVQD-IPMIGVAKG 469

Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDE 559
             R  G E+F      A  L   DP+LYF+QR+RDEAHRFAI THR +R KA   +PLDE
Sbjct: 470 VDRDHGKEEFHRLGAPAFALQRNDPVLYFVQRMRDEAHRFAIGTHRAKRAKAMGATPLDE 529

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + G+G  RKR LL  FG+ K +SR++   L ++EG+S  +A +IY+ FH
Sbjct: 530 VPGVGAARKRALLAHFGSAKAVSRANLSDLKAVEGVSAALAQRIYDFFH 578


>gi|157370091|ref|YP_001478080.1| excinuclease ABC subunit C [Serratia proteamaculans 568]
 gi|189038087|sp|A8GCW2|UVRC_SERP5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157321855|gb|ABV40952.1| excinuclease ABC, C subunit [Serratia proteamaculans 568]
          Length = 610

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 218/616 (35%), Positives = 336/616 (54%), Gaps = 31/616 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D  G V+YVGKA +L+KR+ SY      + +   ++  I  I  TVT 
Sbjct: 13  TVTSQPGVYRMYDATGTVIYVGKAKDLKKRLASYFRQQVGSRKTETLVKNIAQIDVTVTH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGP
Sbjct: 73  TETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADSHPRLAVHRGAKHAKGEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183
           F +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S ++Y + 
Sbjct: 132 FPNSYAVRETLALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEDEYRQQ 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNR 241
           V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          + 
Sbjct: 192 VDYVRLFLSGKDQQVLHQLIERMENASKALNFEEAARIRDQIQAVRRVTERQFVSGNSDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297
           +D   +     +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY      +
Sbjct: 252 LDVIGVAFEAGMACLHVLFIRQGKVLGSRSYFPKVPGGTEMSEVVQTFVGQFYLQGSQMR 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  ILL     E  LL  S  +  G K++I    +G++ + ++ A  NA  + T KLS
Sbjct: 312 TLPAEILLDFTLPEKELLAESLSELAGRKIQIQSKPRGDRARYLKLARTNAATALTTKLS 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + +    L + TK   L     R+E +D SH MG   V   VV   NG ++++YR++N+
Sbjct: 372 QQSTIHQRLAELTKVLNLS-EINRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRYNI 430

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M  VL+RR+ + ++ ++                PDV+ +DGGKGQL 
Sbjct: 431 --TGITPGDDYAAMAQVLKRRYGKALEEKK---------------IPDVIFIDGGKGQLG 473

Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRL 533
            A  V   LNV   +N+  +I IAKG  R AG+E  FFV +GE + L    P L+ IQ +
Sbjct: 474 MAIDVFNSLNVSWDKNKPLLIGIAKGADRKAGLETLFFVPEGEGIALPSDSPALHVIQHI 533

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RD++H  AIT HR+RR K    S L+ I+G+GP R+++LL+  G ++ +  +S E +A +
Sbjct: 534 RDDSHNHAITGHRQRRAKVRNTSALELIDGVGPKRRQVLLKYMGGLQPLLNASVEEIAKV 593

Query: 593 EGISKKIACKIYNHFH 608
            GIS+ +A KIYN   
Sbjct: 594 PGISQALAEKIYNALK 609


>gi|238920172|ref|YP_002933687.1| excinuclease ABC subunit C [Edwardsiella ictaluri 93-146]
 gi|259710339|sp|C5BH21|UVRC_EDWI9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|238869741|gb|ACR69452.1| excinuclease ABC subunit C, putative [Edwardsiella ictaluri 93-146]
          Length = 610

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 212/619 (34%), Positives = 329/619 (53%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY      + +   ++ QI  I  TV
Sbjct: 11  LKTVTNQPGVYRMYDAGAEVIYVGKAKDLKKRLSSYFRCQLASRKTEALVRQIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++   + P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLS-ADRHPRLAVHRGARRARGDYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF + +AV +T+  LQ+ F +R C DSV+R+R+RPCL +QI+RC GPC    ++  +Y 
Sbjct: 130 GPFPNANAVRETLALLQKLFPIRQCEDSVYRNRSRPCLQYQIQRCLGPCVTGLVNDGEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   + FLSG +  + + +   M +A+    +E A   RD++ A+  +        + 
Sbjct: 190 RQVEYVRLFLSGKDSQVIDALVARMEEASRALRFEEAARLRDQIQAVRRVTERQFISGDH 249

Query: 242 MDC--FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
            D     +     +ACI   F   GQ  G+ ++F +  + +T A++L  F+ QFY     
Sbjct: 250 EDIDVIGVAFEAGMACIHVLFIRHGQVLGSRSYFPRVPAGTTLAEVLQTFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  IL+     +  LL  S  +  G ++ I    +G++ + ++ A  NA  +   K
Sbjct: 310 IRTLPGEILIDFLLPDRKLLADSISELAGRRIPIQSQPRGDRARYLKLARTNAVTALNSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L    +        +R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTILQRLVQLEQVLQ-RADIQRMECFDISHTMGEETVASCVVFDRNGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + +  E+                PD++ +DGGKGQ
Sbjct: 429 NIKG--ITPGDDYAAMDQVLRRRYDKALNEEK---------------IPDIIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531
           L  A+ V  +L V    +R  ++ IAKG  R AG+E  F + +GE   L    P L+ IQ
Sbjct: 472 LGQAKQVFAELEVPWDTHRPLLLGIAKGSDRKAGLETLFFEAQGEGFSLPPDSPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRKRR K    S L+ I GIGP R++LLL+  G ++ +  +S + +A
Sbjct: 532 HIRDESHNHAIAGHRKRRAKVRSTSALESIEGIGPKRRQLLLKYMGGMQPLRDASIDEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A KI+    +
Sbjct: 592 KVPGISAALAEKIHYALKQ 610


>gi|52842851|ref|YP_096650.1| excinuclease ABC subunit C [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81376716|sp|Q5ZS74|UVRC_LEGPH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|52629962|gb|AAU28703.1| excinuclease ABC subunit [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 618

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 219/621 (35%), Positives = 339/621 (54%), Gaps = 34/621 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PG+Y+MLD  G VLYVGKA NL+KR+ SY    N   +   ++SQI +I  +VT 
Sbjct: 16  KLPSEPGIYRMLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTR 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE+N+IK L+P++N+LLRDDKS+PYI +++    P +  +R       G++FG
Sbjct: 76  SETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRIELYRSKKKPPSGNFFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+  V AV +TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC   IS E Y   
Sbjct: 136 PYPGVAAVRETIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLS 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
           V +A +FL G    + +++A  M QA  + ++E A + RD++  L  IQ     +     
Sbjct: 196 VEDAIRFLQGKCQIILDELAERMKQAVSQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGD 255

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292
            D  ++      ACIQ      GQ   + +FF        + +             F+  
Sbjct: 256 ADVIAIEVRPGFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFIGF 315

Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           +Y D     P+ I+ ++   E+  LE    ++ G   KI +  +G K + ++ A+ N   
Sbjct: 316 YYLDTSERIPDLIITNQSITESRSLEYILSQRRGKSCKIQINPRGVKSRWMDFAVNNLRI 375

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           S  + +S   + +   +   +  AL    +R+E +D SH  G + V   VV    G   +
Sbjct: 376 SVAEYVSKHSTIRSRYQALKQLLALDKNIERMECFDISHTQGEATVASCVVFDTEGPRPS 435

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YR+FN+    +   DD A M   + RRF +LI                    PDV+I+D
Sbjct: 436 EYRRFNIEG--ITPGDDYAAMEQAVTRRFKRLID---------------VQLLPDVLIID 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529
           GGKGQ+S  + VL  L VE+ IT++ ++KGP R AG EK   V +    VL      L+ 
Sbjct: 479 GGKGQVSIVKRVLTSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHL 537

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q +RDEAHRFAIT HRK+R+K    S L+ I G+G  R++ LLQ FG ++ ++++  E 
Sbjct: 538 LQHIRDEAHRFAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKAPLEE 597

Query: 589 LASIEGISKKIACKIYNHFHK 609
           +  ++GIS+++A +IY HFH 
Sbjct: 598 ICKVQGISEQLAKRIYEHFHP 618


>gi|261856390|ref|YP_003263673.1| excinuclease ABC, C subunit [Halothiobacillus neapolitanus c2]
 gi|261836859|gb|ACX96626.1| excinuclease ABC, C subunit [Halothiobacillus neapolitanus c2]
          Length = 657

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 217/623 (34%), Positives = 333/623 (53%), Gaps = 32/623 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + + E PG+Y+M      +LY+GKA NL+ R+ SY        +   ++ QI  I  T 
Sbjct: 23  LKSVTERPGIYRMYGEDDVILYIGKARNLKARLSSYFRG-QQAIKTQALVRQIVRIEITA 81

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE+N+IK  +PR+NILLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 82  TQTEAEALLLESNLIKAHRPRYNILLRDDKSYPWIYVSTDQDYPRLAYHRGARKRKGCYF 141

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+++  AV +T+N L++ F +R C DSVFR+R+RPCL +QI RC+ PC G IS E Y +
Sbjct: 142 GPYSAPSAVRETLNLLEKVFKVRQCEDSVFRNRSRPCLQYQIGRCTAPCVGFISPEAYRQ 201

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            V +   FLSG +  L E++A  M QA    D+E A   RD+++ L  +           
Sbjct: 202 DVDDTMAFLSGRSQILTEQLAERMAQAAAALDFEQAAQLRDQISQLRVVAQQQSITGVNG 261

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D  +L    NL  +       G++ GT ++F +  +++  A+ ++ F+ Q+Y ++  P
Sbjct: 262 DADVIALIMVMNLTVVAVSTIRDGRHLGTRSYFPQVPADTEPAETMAGFISQYYAEREAP 321

Query: 301 ENILLSEEAEETSLLEISFFK----QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
             +L S   ++ + L          Q G +V  T P++G+ R+ +EQ   NA  +  ++L
Sbjct: 322 VRVLCSPLPQDVAFLSDGLSNAVGAQTGRRVTFTTPQRGKAREWLEQTAENARLAAQERL 381

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           ++ I  +           L    +RIE +D SH  G   V   VV G  G  K+QYR+++
Sbjct: 382 ASRIGLETRFAALRAVTGLS-QIQRIECFDISHTQGELTVASCVVFGVEGAQKDQYRRYS 440

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M   L RRF++  +                   PDV+++DGG GQ+
Sbjct: 441 IEG--ITPGDDYAAMHQALTRRFARAQREG--------------GILPDVLLIDGGAGQV 484

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK------GEALVLNMRDPILYFI 530
           + AQ VL  L ++  + ++ +AKG  R AG E+    K      GE   L+  DP L+ I
Sbjct: 485 AQAQAVLSALAID-SVYLLGVAKGVARRAGEERLIRPKTSTGQGGEETRLDPHDPALHLI 543

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           Q++RDEAHRFAIT HR RR+KA   S L++I G+G  R++ LL  FG ++ +  +S   L
Sbjct: 544 QQVRDEAHRFAITGHRARRQKARTQSDLEKIPGVGAKRRQALLTHFGGMRGLRHASVAEL 603

Query: 590 ASIEGISKKIACKIYNHFHKNTS 612
           A + GIS  +A  I    H+   
Sbjct: 604 AKVPGISMSLAEGIQAWLHEGAD 626


>gi|198283111|ref|YP_002219432.1| excinuclease ABC subunit C [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247632|gb|ACH83225.1| excinuclease ABC, C subunit [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 623

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/609 (37%), Positives = 331/609 (54%), Gaps = 22/609 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PG+YQM     R+LYVGKA NL++R+ SY     HT +   M++Q+  +   VT 
Sbjct: 28  TLTSQPGIYQMFGQGSRLLYVGKARNLRRRVSSYFQKQRHTPKTLAMLAQVTRVEVVVTH 87

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LEAN+IKR  P +NILLRDDKS+PY+ I   H  P +  HR +   +G YFGP
Sbjct: 88  TETEALVLEANLIKRHHPPYNILLRDDKSYPYLFIETGHGTPRMSLHRGAQKGKGHYFGP 147

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +V A+ +++  LQ+ F LR+C D  F HR+R CL FQI+RCSGPC G IS E Y   V
Sbjct: 148 YPAVTALRESMVLLQKAFRLRTCEDHTFHHRSRACLQFQIRRCSGPCVGHISGEDYARDV 207

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241
            +  +FL G +      +   M  A  + D+E A   RD++AALS IQ            
Sbjct: 208 ADTIRFLEGKSDEAIRSLGERMQAAAEQLDFEEAARRRDQIAALSKIQERQYVAQAGGGD 267

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +         +   F   G+  G  + F +   E     +L+ FL QFY+DK  P 
Sbjct: 268 FDVLAAAQENGQWVVYVSFIRNGRQLGGRSVFPRHTEEVRAPDVLAAFLMQFYSDKEVPG 327

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
           N+L++      + L  +   + G++V I  P++G +++ +  AL NA  +  Q+  T  +
Sbjct: 328 NLLVNVLPRSPTSLAEALGSEAGHRVMIDQPQRGPRKRWMALALTNAMGALRQRTQTAGA 387

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +  +    + F LP IP+R+E +D SH  G  AV   VV G++G +KN+YR+FN+    
Sbjct: 388 GRRRMLLLQELFQLPEIPQRVECFDISHTRGEVAVASCVVFGDDGALKNEYRRFNIRD-- 445

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           ++  DD A M   + RR+ +L K                 + P++V +DGG GQ++ AQ 
Sbjct: 446 IRGGDDYAAMEQAVHRRYGRLQKEG--------------LALPEIVFIDGGAGQVARAQA 491

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRF 540
            L  L +   I +  +AKG  R  G+E   +        L+  DP L  IQ +RDEAHRF
Sbjct: 492 ALDALEI-GCIQLCGVAKGTTRRPGLEMLHIPGWAVPRQLDDDDPALLVIQEIRDEAHRF 550

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR RR KA   S LD I+GIGP R+  LL++FG ++ I  +  E L  +EGI  ++
Sbjct: 551 AITGHRARRGKARQESDLDGISGIGPKRRVALLRAFGGLRGIRDAGMEDLQRVEGIHLEL 610

Query: 600 ACKIYNHFH 608
           A +IY+ FH
Sbjct: 611 AQRIYDFFH 619


>gi|160939920|ref|ZP_02087267.1| hypothetical protein CLOBOL_04811 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437354|gb|EDP15119.1| hypothetical protein CLOBOL_04811 [Clostridium bolteae ATCC
           BAA-613]
          Length = 659

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 190/629 (30%), Positives = 314/629 (49%), Gaps = 22/629 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M +    ++YVGKA +L+ R++ Y  S+ N T +I  M+S I    +
Sbjct: 7   ELKKLPASPGVYLMHNDRDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEQMVSHIAWFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-G 119
            +T +E+EAL+LE N+IK  +PR+N +L+DDKS+PYI  T     P L   RD       
Sbjct: 67  ILTDSELEALVLECNLIKEHRPRYNTMLKDDKSYPYIKATMGEDFPRLLFARDMKKDGRS 126

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISS 177
            YFGP+ S  AV+ T++ + + + +R+C  ++ +   + RPCL + IK+C  PC G IS 
Sbjct: 127 RYFGPYTSAGAVKDTLDLIHKLYRIRTCNRNLPKDTGKERPCLNYHIKQCDAPCQGYISR 186

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E+Y    ++A  FL+G    L + +   M  A+   ++E AI +R+ L ++  +      
Sbjct: 187 EEYQSNFNQALDFLNGRFDPLIKNLQEKMQTASDNLEFERAIEYRELLNSVKQVAQKQKI 246

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             + M   D  ++  ++  A +Q  F   G+  G   F +   +     +IL  F++QFY
Sbjct: 247 TSSGMEDRDIVAMARDERDAVVQVFFIREGKLIGRDHFHISAATAENEGEILDSFVKQFY 306

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349
              P  P  + L     +  ++      + G KV++ VPK+GEK +++E A  NA     
Sbjct: 307 AGTPFIPRELWLQHPLGDEEVISQWLSAKRGQKVRLVVPKKGEKERLVELAARNAALVLS 366

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +   +    E+     +     +       +R+E YD S+  G  +VG MVV  +    +
Sbjct: 367 QDKERIKKEELRTIGAINQ-IGELIGIGGIRRMEAYDISNTSGVESVGSMVVYEDGRPKR 425

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL-NFHPKKQEYSFPSWPDVVI 468
           + YRKF +    V+  +D A M  VL RRFS  ++  E L          SF  +PD+++
Sbjct: 426 SDYRKFRIKT--VQGPNDYASMEEVLTRRFSHGMRETEELKEKGADLSMGSFTRFPDLIM 483

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGG+GQ++ A  VL KL +   I +  + K                  + ++       
Sbjct: 484 MDGGRGQVNIALEVLDKLGLS--IPVCGMVKDDNHRTRG---LYYNNVEIPIDRHSEGFR 538

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            I R++DEAHRFAI  HR  R K    S LD+I GIGP R++ L++ F  ++ +  +S E
Sbjct: 539 LITRIQDEAHRFAIEYHRSLRGKGQVKSILDDIPGIGPARRKALMRHFKDIEAVRSASVE 598

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTPT 616
            L     ++++ A  +Y  FH +     T
Sbjct: 599 ELEQTPQMNRRSAESVYRFFHGDKESDRT 627


>gi|260888187|ref|ZP_05899450.1| excinuclease ABC subunit C [Selenomonas sputigena ATCC 35185]
 gi|260862021|gb|EEX76521.1| excinuclease ABC subunit C [Selenomonas sputigena ATCC 35185]
          Length = 627

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 203/611 (33%), Positives = 318/611 (52%), Gaps = 35/611 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVTC 64
           +P+ PGVY M D  GR++YVGKA  L+ R++ Y  S  H   ++  M+++I +    +T 
Sbjct: 32  LPDSPGVYIMKDAKGRIIYVGKAVVLKNRVRQYFQSGKHQAPKVRAMVAKIADFETILTH 91

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +EVEAL+LE N+IK+ +PR+NI L+DDKS+PY+ +T   + P +   R  +     YFGP
Sbjct: 92  SEVEALILECNLIKKHRPRYNISLKDDKSYPYLKVTLADEYPRVVVTRRVTKDGSRYFGP 151

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  A+ +++  L+R F LR+C +       RPCL + IKRC  PC   +  E+Y   +
Sbjct: 152 YTSAGAMHESVKLLKRLFPLRTCKNMKVE---RPCLEYHIKRCLAPCCEPVDKEEYGAMI 208

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242
            E   FL G    ++++++R M +A    D+E A   RD++AA+  +    + +      
Sbjct: 209 REVCLFLEGRTEQVEKELSRRMTEAAEDYDFERAARLRDQIAAVRKVAEKQNIVTGSGDQ 268

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPE 301
           D   +  +   A +       G+  G   F L    E T+  +L+ FL+Q+Y      P 
Sbjct: 269 DAIGMARSGLGAVVMVFLIRAGKMVGREHFLLSGSEEETDEALLTAFLKQYYHRAAFVPR 328

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST--- 358
            ILL    EET LLE    ++ G KV + VP++G K  ++E A  NA +  T + +    
Sbjct: 329 EILLPFPIEETELLEGWLAERKGAKVALAVPQRGTKHDVVEMARSNAEKYLTDEAARIEQ 388

Query: 359 -EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                   +++  +   L   P R+E +D SH  G   V  MVV       K+ YR+F +
Sbjct: 389 ANDQTLGAVRELGRYLGLKEEPMRMECFDISHNQGSETVASMVVFEGGLPKKSDYRRFKI 448

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
              +    DD   MR V ERR+++L ++E                 PD++I+DGGKGQLS
Sbjct: 449 RSAEG-KPDDFLSMREVTERRYTKLAEDE----------------MPDLIIIDGGKGQLS 491

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           +A  +++       + ++ +AK  +       F     + ++L  R   LY I+R+RDEA
Sbjct: 492 SALEIIRGAG-HLTVPVVGLAKQFE-----YIFTEGSSDPVILPRRSQALYLIERIRDEA 545

Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HRK R K+   S LD I GIGP R++ L   FGT+  I  +S E LA+++G++
Sbjct: 546 HRFAITYHRKLRGKRNLVSVLDHIAGIGPKRRKALWNHFGTIAKIKAASVEELAAVDGMT 605

Query: 597 KKIACKIYNHF 607
              A  + N F
Sbjct: 606 LPAAEAVKNFF 616


>gi|54298634|ref|YP_125003.1| excinuclease ABC subunit C [Legionella pneumophila str. Paris]
 gi|81369772|sp|Q5X1P5|UVRC_LEGPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|53752419|emb|CAH13851.1| hypothetical protein lpp2698 [Legionella pneumophila str. Paris]
          Length = 618

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 219/621 (35%), Positives = 339/621 (54%), Gaps = 34/621 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PG+Y+MLD  G VLYVGKA NL+KR+ SY    N   +   ++SQI +I  +VT 
Sbjct: 16  KLPSEPGIYRMLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTR 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE+N+IK L+P++N+LLRDDKS+PYI +++    P +  +R       G++FG
Sbjct: 76  SETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRIELYRSKKKPPSGNFFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+  V AV +TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC   IS E Y   
Sbjct: 136 PYPGVAAVRETIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLS 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
           V +A +FL G    + + +A  M QA  + ++E A + RD++  L  IQ     +     
Sbjct: 196 VEDAIRFLQGKCQIILDALAERMKQAVNQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGD 255

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292
            D  ++      ACIQ      GQ   + +FF        + +             F+  
Sbjct: 256 ADVIAIEVRPGFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFIGF 315

Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           +Y D     P+ I+ ++   E+  LE    ++ G   KI V  +G K + ++ A+ N   
Sbjct: 316 YYLDTTERIPDLIITNQSITESRSLEYILSQRRGKSCKIQVNPRGVKSRWMDFAVNNLRI 375

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           S  + +S   + +   +   +  AL    +R+E +D SH  G + V   VV    G   +
Sbjct: 376 SVAEYVSKHSTIRSRYQALKQLLALDKNIERMECFDISHTQGEATVASCVVFDTEGPRPS 435

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YR+FN+    +   DD A M   + RRF +LI  +                 PDV+I+D
Sbjct: 436 EYRRFNIEG--ITPGDDYAAMEQAVTRRFKRLIDAQ---------------LLPDVLIID 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529
           GGKGQ+S  + VL  L VE+ IT++ ++KGP R AG EK   V +    VL      L+ 
Sbjct: 479 GGKGQVSIVKRVLTSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHL 537

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q +RDEAHRFAIT HRK+R+K    S L+ I G+G  R++ LLQ FG ++ ++++  E 
Sbjct: 538 LQHIRDEAHRFAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKAPLEE 597

Query: 589 LASIEGISKKIACKIYNHFHK 609
           +  ++GIS+++A +I+ HFH 
Sbjct: 598 ICKVQGISEQLAKRIHEHFHP 618


>gi|218667420|ref|YP_002425340.1| excinuclease ABC, C subunit [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218519633|gb|ACK80219.1| excinuclease ABC, C subunit [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 608

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/609 (37%), Positives = 331/609 (54%), Gaps = 22/609 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PG+YQM     R+LYVGKA NL++R+ SY     HT +   M++Q+  +   VT 
Sbjct: 13  TLTSQPGIYQMFGQGSRLLYVGKARNLRRRVSSYFQKQRHTPKTLAMLAQVTRVEVVVTH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LEAN+IKR  P +NILLRDDKS+PY+ I   H  P +  HR +   +G YFGP
Sbjct: 73  TETEALVLEANLIKRHHPPYNILLRDDKSYPYLFIETGHGTPRMSLHRGAQKGKGHYFGP 132

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +V A+ +++  LQ+ F LR+C D  F HR+R CL FQI+RCSGPC G IS E Y   V
Sbjct: 133 YPAVTALRESMVLLQKAFRLRTCEDHTFHHRSRACLQFQIRRCSGPCVGHISGEDYARDV 192

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241
            +  +FL G +      +   M  A  + D+E A   RD++AALS IQ            
Sbjct: 193 ADTIRFLEGKSDEAIRSLGERMQAAAEQLDFEEAARRRDQIAALSKIQERQYVAQAGGGD 252

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +         +   F   G+  G  + F +   E     +L+ FL QFY+DK  P 
Sbjct: 253 FDVLAAAQENGQWVVYVSFIRNGRQLGGRSVFPRHTEEVRAPDVLAAFLMQFYSDKEVPG 312

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
           N+L++      + L  +   + G++V I  P++G +++ +  AL NA  +  Q+  T  +
Sbjct: 313 NLLVNVLPRSPTSLAEALGSEAGHRVMIDQPQRGPRKRWMALALTNAMGALRQRTQTAGA 372

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +  +    + F LP IP+R+E +D SH  G  AV   VV G++G +KN+YR+FN+    
Sbjct: 373 GRRRMLLLQELFQLPEIPQRVECFDISHTRGEVAVASCVVFGDDGALKNEYRRFNIRD-- 430

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           ++  DD A M   + RR+ +L K                 + P++V +DGG GQ++ AQ 
Sbjct: 431 IRGGDDYAAMEQAVHRRYGRLQKEG--------------LALPEIVFIDGGAGQVARAQA 476

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRF 540
            L  L +   I +  +AKG  R  G+E   +        L+  DP L  IQ +RDEAHRF
Sbjct: 477 ALDALEI-GCIQLCGVAKGTTRRPGLEMLHIPGWAVPRQLDDDDPALLVIQEIRDEAHRF 535

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR RR KA   S LD I+GIGP R+  LL++FG ++ I  +  E L  +EGI  ++
Sbjct: 536 AITGHRARRGKARQESDLDGISGIGPKRRVALLRAFGGLRGIRDAGMEDLQRVEGIHLEL 595

Query: 600 ACKIYNHFH 608
           A +IY+ FH
Sbjct: 596 AQRIYDFFH 604


>gi|149908473|ref|ZP_01897136.1| excinuclease ABC subunit C [Moritella sp. PE36]
 gi|149808636|gb|EDM68571.1| excinuclease ABC subunit C [Moritella sp. PE36]
          Length = 625

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 220/623 (35%), Positives = 338/623 (54%), Gaps = 34/623 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L KR+ SY        +   +++ I NI  TV
Sbjct: 21  LKTVSHQPGVYRMYDHKDVVIYVGKAKDLHKRLTSYFRKTVDREKTRVLVTHITNIDVTV 80

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE   IKR +PR+N+ LRDDKS+PYILIT  HK P L   R  +  +G YF
Sbjct: 81  THSETEALVLEHTYIKRYQPRYNVSLRDDKSYPYILIT-AHKHPQLTSIRSKNKRKGQYF 139

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ S  AV ++++ +Q+ F +R C DS +++R+RPCL FQ+KRC GPC    + E+Y +
Sbjct: 140 GPYPSGSAVRESLHLMQKLFPVRQCEDSYYQNRSRPCLQFQLKRCLGPCVKMDNPEEYNQ 199

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V  A  FL G N ++  ++   M  A+ + D+E+A  +RD++ AL  IQ       +  
Sbjct: 200 QVELAALFLKGKNIDVINELVMKMENASQQLDFEAAARYRDQIQALRTIQEQQYVTSDLG 259

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-- 298
            MD     +   +AC+   F   G+  G+ ++F K  +++  ++++  FL Q+Y +K   
Sbjct: 260 EMDVIGFAYKNGIACVHLLFVRSGKVFGSRSYFPKVPADTDISEVIQAFLLQYYLNKETQ 319

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ +LL+E  E+  L+E S  +  G K+K+T PK+G++ K +  AL NA  + T KL
Sbjct: 320 QAIPKEVLLTELPEDNDLIESSLSQLAGRKIKLTSPKRGDRHKFLRLALTNAESALTTKL 379

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           +T+ +     K   K        +R+E +D SH  G   V   VV   +G  K  YR +N
Sbjct: 380 ATKSTVLNRFKALEKVLKFDGKIQRMECFDISHTGGEQTVASCVVFNRDGPNKTDYRHYN 439

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M  VL+RRF ++ + ++                PD++ +DGGKGQ+
Sbjct: 440 I--SGITGGDDYAAMAQVLDRRFKKVAEVDK---------------IPDILFIDGGKGQM 482

Query: 477 SA---AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK------GEALVLNMRDPIL 527
           +             V  R  II IAKG  R AG+E   +             L    P L
Sbjct: 483 TQAERVLTQYADNFVVKRPLIIGIAKGVTRKAGLETLILSGALDNVPDIEFYLPSDSPAL 542

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           + +Q +RDE+HRFAIT HR RR K    S L+ I G+GP R+++LL+  G ++ +  +S 
Sbjct: 543 HLVQHIRDESHRFAITGHRARRNKVKRTSALENIPGVGPKRRQVLLKYMGGLQQLRGASR 602

Query: 587 ETLASIEGISKKIACKIYNHFHK 609
           E +A + GIS  +A KIY+  H+
Sbjct: 603 EEIAKVPGISIDLAEKIYDSLHQ 625


>gi|134095247|ref|YP_001100322.1| excinuclease ABC subunit C [Herminiimonas arsenicoxydans]
 gi|229558034|sp|A4G6R2|UVRC_HERAR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|133739150|emb|CAL62199.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Herminiimonas arsenicoxydans]
          Length = 618

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 217/619 (35%), Positives = 324/619 (52%), Gaps = 34/619 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D    +LYVGKA +L+KR+ SY   N  + R   M+ +I  +  T+T 
Sbjct: 19  KLPNLPGVYRYFDAENNLLYVGKARDLKKRVSSYFLKNLASPRTALMVEKIARLETTITR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L+PR+NIL RDDKS+PY+ IT + K P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQ-KFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV++++  LQ+ F LR+C DSVF +RTRPCLL QI RCS PC   IS E Y   V
Sbjct: 138 FPSGWAVKESMQILQKVFLLRTCEDSVFANRTRPCLLHQIHRCSAPCVNYISQEDYALDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A KFL G    + E +   M     +  +E A + R+++ ALS + +           
Sbjct: 198 DNAAKFLRGRQTEVLEVLQAKMLAYAEELKFEQAALVRNQINALSRVLHQQSMDTGGDAD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-------DSESTNAQILSYFLRQFY 294
           +D  ++      AC+       G++ G   +F            ES  A+++  FL Q Y
Sbjct: 258 IDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNVLTNAEESVAAEVMKAFLAQHY 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            DK  P  ++L+ E +E  L+     +Q G+++ +    QG +R+ +E A   A  S  +
Sbjct: 318 IDKFIPGTLILNTEIDEPELMLALM-QQCGHRINLIFQPQGPRRQWLEMAQKGAEISLAR 376

Query: 355 KLST---EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
            LS    + +   +L D  K         R+E +D SH  G +     VV   +     +
Sbjct: 377 LLSEQGSQQTRTRMLVDALKIDVEDIEAFRVECFDISHTQGEATQASCVVFHHHAMQNGE 436

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++N++   +   DD A MR VL RR+ ++   +                 PDVV++DG
Sbjct: 437 YRRYNIND--ITPGDDYAAMRQVLMRRYEKVANGD--------------GVMPDVVLIDG 480

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFI 530
           GKGQ+  A+ V  +L ++  + I+ +AKG  R  G+E      G     L      L  I
Sbjct: 481 GKGQVEMARQVFVELGLDISL-IVGVAKGEGRKVGLETLVFVDGRAPQELGKESGALMLI 539

Query: 531 QRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            ++RDEAHRFAIT  R +R KA   S L+EI GIG  R++ LL  FG ++ +  +S E L
Sbjct: 540 AQIRDEAHRFAITGMRAKRAKARQTSRLEEIEGIGAKRRQKLLARFGGLRGVVDASVEDL 599

Query: 590 ASIEGISKKIACKIYNHFH 608
           +S+EGIS+++A  IY   H
Sbjct: 600 SSVEGISRQLAEDIYKQLH 618


>gi|309781195|ref|ZP_07675932.1| excinuclease ABC subunit C [Ralstonia sp. 5_7_47FAA]
 gi|308920016|gb|EFP65676.1| excinuclease ABC subunit C [Ralstonia sp. 5_7_47FAA]
          Length = 657

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 213/637 (33%), Positives = 328/637 (51%), Gaps = 48/637 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D+ G VLYVGKA +L+KR+ SY +    + RI  M+++I  I  TV  
Sbjct: 36  RLPNLPGVYRYFDVQGNVLYVGKARDLKKRVSSYFNKTLLSPRIAMMVAKIARIDTTVVR 95

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H  P +  +R ++  +  YFGP
Sbjct: 96  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRRHQYFGP 154

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RCSGPC   IS+E Y   V
Sbjct: 155 FPSAHAVRESMQILQKVFRLRTCEDTVFNNRTRPCLLHQIHRCSGPCVQAISAEDYARDV 214

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240
             A  FL G    + + +   M +      +E A I RD++ ALS +            +
Sbjct: 215 ANAASFLQGRQDEVMQTLQDKMQRYAESLAFEQAAIVRDQIGALSTVLKQQSVEEVGHAS 274

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276
            +D  ++      AC+       G++ G   +F                           
Sbjct: 275 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADSVSAAETSR 334

Query: 277 DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336
           D+E     IL  F+ Q Y D+  P  +++S     T L+  +  +Q G ++ +    QG 
Sbjct: 335 DAERMARDILEAFVAQHYLDQFVPPVLVVSHPILATELI-DALAEQAGRRISVVRQPQGG 393

Query: 337 KRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHIMGC 393
           +R  +E A   A  S  ++LS + S Q   +   +   +        R+E +D SH  G 
Sbjct: 394 RRAWLEMAEKGAELSLMRRLSEQGSQQARTRALAETIGIDLEDLAALRVECFDISHTAGE 453

Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453
           +     VV   +    ++YR++N+    +   DD A MR VL RR+ ++++         
Sbjct: 454 ATQASCVVFHSHAMQNSEYRRYNIQD--ITPGDDYAAMRQVLTRRYQKIVEQ-------- 503

Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513
                  P+ P +V++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+E     
Sbjct: 504 --AGEDAPNMPTIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLETLVFA 560

Query: 514 KGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLL 571
            G   L L      L  + ++RDEAHRFAIT  R +R KA   S L+EI GIG  R++ L
Sbjct: 561 DGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKRRQRL 620

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L  FG ++ +  +S + LA++EGIS+ +A +IY   H
Sbjct: 621 LARFGGLRGVMAASVDELATVEGISQTLAEEIYRQLH 657


>gi|187928031|ref|YP_001898518.1| excinuclease ABC subunit C [Ralstonia pickettii 12J]
 gi|187724921|gb|ACD26086.1| excinuclease ABC, C subunit [Ralstonia pickettii 12J]
          Length = 657

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 213/637 (33%), Positives = 325/637 (51%), Gaps = 48/637 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D  G VLYVGKA +L+KR+ SY +    + RI  M+++I  I  TV  
Sbjct: 36  RLPNLPGVYRYFDAQGNVLYVGKARDLKKRVSSYFNKTLLSPRIAMMVAKIARIDTTVVR 95

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H  P +  +R ++  +  YFGP
Sbjct: 96  NEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRRHQYFGP 154

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RCSGPC   I +E Y   V
Sbjct: 155 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCSGPCVQAIGAEDYARDV 214

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240
             A  FL G    + + +   M +     ++E A I RD++ ALS +            +
Sbjct: 215 ANAAGFLQGRQDEVMQTLQDKMQRYAESLEFEQAAIVRDQIGALSTVLKQQSVEEVGHAS 274

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276
            +D  ++      AC+       G++ G   +F                           
Sbjct: 275 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADGEAAAETSR 334

Query: 277 DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336
           D+E   + IL  F+ Q Y D+  P  +++S +   T L+     +Q G +V +    QG 
Sbjct: 335 DAERMASDILEAFVAQHYLDQFVPPVLVVSHQIHATELINA-LAEQAGRRVSVVRQPQGG 393

Query: 337 KRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHIMGC 393
           +R  +E A   A  S  ++LS + S Q       +   +        R+E +D SH  G 
Sbjct: 394 RRAWLEMAEKGAELSLMRRLSEQGSQQARTLALAETIGIDLEDLAALRVECFDISHTAGE 453

Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453
           +     VV   +    ++YR++N+    +   DD A MR VL RR+ ++++         
Sbjct: 454 ATQASCVVFHSHAMQNSEYRRYNIQD--ITPGDDYAAMRQVLTRRYQKIVEQ-------- 503

Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513
                  P+ P +V++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+E     
Sbjct: 504 --AGEDAPNMPTIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLETLVFA 560

Query: 514 KGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLL 571
            G   L L      L  + ++RDEAHRFAIT  R +R KA   S L+EI GIG  R++ L
Sbjct: 561 DGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKRRQRL 620

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L  FG ++ +  +S   LA++EGIS+ +A +IY   H
Sbjct: 621 LARFGGLRGVMAASVAELATVEGISQTLAEEIYRQLH 657


>gi|91792795|ref|YP_562446.1| excinuclease ABC subunit C [Shewanella denitrificans OS217]
 gi|119367833|sp|Q12PA3|UVRC_SHEDO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91714797|gb|ABE54723.1| Excinuclease ABC subunit C [Shewanella denitrificans OS217]
          Length = 609

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 202/616 (32%), Positives = 323/616 (52%), Gaps = 28/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +    GVY+M D  G V+YVGKA +L+KR+ SY  +N    +   ++S I NI  T+
Sbjct: 10  LKNLSSSAGVYRMYDAKGEVIYVGKAKDLKKRLSSYFRANLGNIKTQALVSHITNIDVTL 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E +ALLLE + IK+  P++N+LLRDDKS+PY+ ++  HK P L  HR     +G YF
Sbjct: 70  THSETDALLLENDYIKQYMPKYNVLLRDDKSYPYLFLS-GHKHPRLAYHRGPQREKGRYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV +++N LQ+ F +R C D  ++ RTRPCL +Q+ RCS PC  +++ E Y E
Sbjct: 129 GPYPNGGAVRESLNLLQKLFPIRQCDDLYYKARTRPCLQYQLGRCSAPCVNKVTDEDYAE 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V  A  FL G +  +   +   M QA  +  YE A  +RD++ AL  +    +   +  
Sbjct: 189 QVQLASLFLQGKDQQVVTNLVTKMEQAAEEFHYEQAAAYRDQITALRKVAEQQEVSLDKG 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC- 299
            MD   +++ K +AC    F   G+  G+ +++    +++   ++LS F+ QFY +    
Sbjct: 249 DMDVIGVHYEKAIACFHMLFIRSGKIFGSRSYYPSVPAQTDIDEVLSAFISQFYLNADVQ 308

Query: 300 ---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  ++LS+   + + LE +  +    K  I    +GE+   +  AL NA  + T +L
Sbjct: 309 RTLPNEVILSQSFSDKAELESAIAEALEKKFIIKTQVRGERASFLRLALTNATNAVTTRL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + + + +       +   L H   R+E +D SH MG S V   VV    G  K  YR++N
Sbjct: 369 ADKNTQEQRFSLLEEALELGHSIGRMECFDISHTMGESTVASCVVFNREGPHKADYRRYN 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M   + RRF ++  N +                PD+V +DGG GQL
Sbjct: 429 I--SGITGGDDYAAMEQAINRRFDKIDTNGK---------------VPDIVFIDGGLGQL 471

Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533
             AQG++ +   +++    +I + KG  R AG+E F     E    L       + I  +
Sbjct: 472 RIAQGIVDEKCAHLDRPPLLIGVTKGEGRKAGLETFVFGGSEQQFNLPSDSGAFHLILHI 531

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR +R+K    S L+ I G+GP R++ LLQ  G ++ +  +S   L  +
Sbjct: 532 RDESHRFAITGHRNKRQKTRNTSSLESIAGVGPKRRKALLQHLGGLQEVKGASVAELTKV 591

Query: 593 EGISKKIACKIYNHFH 608
            GIS ++A  I++   
Sbjct: 592 PGISLEMAQTIHDALR 607


>gi|304313068|ref|YP_003812666.1| Nuclease subunit of the excinuclease complex [gamma proteobacterium
           HdN1]
 gi|301798801|emb|CBL47034.1| Nuclease subunit of the excinuclease complex [gamma proteobacterium
           HdN1]
          Length = 616

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 206/615 (33%), Positives = 324/615 (52%), Gaps = 29/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + + PGVY+MLD  G VLYVGKA NL+ R+ SY  S     +   ++ +I  +  TVT 
Sbjct: 18  SLTQAPGVYRMLDGKGEVLYVGKAKNLKSRVSSYFRSKQLPIKTAALVQRIQRVEVTVTL 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E+EALLLE  +IK  +P FNILLRDDKS+PYI ++   + P L  HR     +G YFGP
Sbjct: 78  SEIEALLLEQTLIKEYRPPFNILLRDDKSYPYIFLS-DEEWPRLAYHRGPKKAKGRYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  AV +T+N L++ F LR C ++ FR+R RPCL  QI+RC+ PC G +S+E Y E V
Sbjct: 137 YPSSLAVRETLNLLEKMFQLRQCDNAFFRNRQRPCLKQQIQRCTAPCVGLVSAEDYAEQV 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242
                FL G ++ + E+IA  M QA    ++E A   R++L A+  +Q           M
Sbjct: 197 RMTVLFLEGKSNQIAEEIAAKMEQAAATLEFERAATLRNQLTAIRRVQEQQYVDGEGGDM 256

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK----TDSESTNAQILSYFLRQFYTDK- 297
           D F +   + +AC Q  F   G+  G+ ++F       D    +  +L+ F+  ++    
Sbjct: 257 DVFGIAIAEGVACFQVVFVRAGRVLGSKSYFEPAYGVGDGTDEHQDVLTEFISNYFLGNI 316

Query: 298 --PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               PE++ L  +      +E S  ++Y    +        +      A  NA  +    
Sbjct: 317 TRDVPEDVYLPHKIGFAESVEKSIRERYHRHFRFVYRLASNRSGWARLAARNAEENLESH 376

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+ + +     +   ++  +  +P+R+E +D SH  G   V   VV   NG  ++ YR+F
Sbjct: 377 LANKRTQWQKHQSLQEQLRMASLPQRLECFDISHTSGEHPVASCVVFDLNGPRRSDYRRF 436

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    ++  DD A +   + RR+ + +   + L              PD++++DGGKGQ
Sbjct: 437 NIRD--IQPGDDYAAIEQAVFRRYQKCVDQHQPL--------------PDLILIDGGKGQ 480

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLR 534
           L  A   L+K+ V +   +++IAKG  R AG+E  F V +     L         +Q++R
Sbjct: 481 LGRAVIALEKIGVGSE-RLLAIAKGHTRKAGLETLFTVARPLGFSLPRDCGASLLLQQIR 539

Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HR +R KA   S ++++ G+GP+R++ LL  FG +  +  +S E +A ++
Sbjct: 540 DEAHRFAITGHRGQRLKARVRSSVEDLPGVGPVRRKRLLNHFGGLSALRSASQEEIAKVK 599

Query: 594 GISKKIACKIYNHFH 608
           GIS K+A +IY   H
Sbjct: 600 GISSKLAEEIYEALH 614


>gi|302868795|ref|YP_003837432.1| excinuclease ABC subunit C [Micromonospora aurantiaca ATCC 27029]
 gi|302571654|gb|ADL47856.1| excinuclease ABC, C subunit [Micromonospora aurantiaca ATCC 27029]
          Length = 650

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 187/641 (29%), Positives = 305/641 (47%), Gaps = 41/641 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA NL+ R+ SY         R   M+    ++ +   
Sbjct: 13  TIPESPGVYRFRDGTGRVIYVGKARNLRSRLNSYFADPVGLHQRTRQMVFTAESVDWITV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL  E   IK+  PRFN+  RDDKS+PY+ +T   + P L   R        YFG
Sbjct: 73  ATEVEALQQEYTWIKQYDPRFNVRYRDDKSYPYLAVTLDEEYPRLQVMRGVKRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +++E++
Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIGKCSAPCVGSVTAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V     F++G    +  ++ + M  A+ + ++E A   RD +AAL         +  
Sbjct: 193 REIVDGFCDFMAGRTDTMVRRLEKEMLDASEQLEFERAARLRDDVAALRRAMEKQTVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  +   +   A +Q      G+ RG   + ++   E T   ++ +F  Q Y   
Sbjct: 253 DGTDADVVAFADDPLEAAVQVFHVRGGRVRGQRGWVVEKTEELTTGDLVHHFCTQVYGGE 312

Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +   P  +L+ E   +   L      + G +V + VP++G+KR ++E    NA  +  
Sbjct: 313 QGEADVPRELLVPELPGDADALADWLTARRGSRVSLRVPQRGDKRSLLETVERNARDALA 372

Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +          +    L +     A+   P RIE +D S I G   V  MVV  +    K
Sbjct: 373 RHKLKRAGDLTTRSQALDEIADALAMNTSPLRIECFDVSQIQGTDVVASMVVFEDGLPRK 432

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN---------------EENLNFHPK 454
           ++YR+F +        DD + M  VL RRF++ +                 +        
Sbjct: 433 SEYRRFIVRG----ATDDLSAMSEVLRRRFARYLDARAETGELGEETASDPDRPGIDPTT 488

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
            +   F   P +V++DGG  Q++AA   L +L +++ + +  +AK  +     E +    
Sbjct: 489 GRPRKFAYPPQLVVVDGGPPQVAAAAKALAELGIDD-VALCGLAKRLE-----EVWLPDD 542

Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573
              ++L      LY +QR+RDEAHRFAIT HR+RR K    S LD + G+G +R++ LL+
Sbjct: 543 EFPVILPRTSEALYLLQRVRDEAHRFAITFHRQRRSKRMTESALDNVPGLGEVRRKALLR 602

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            FG++K +S ++ E +  + G+ ++ A  I      +T+ T
Sbjct: 603 HFGSLKRLSSATVEEITEVPGVGRRTAEAILAALDGSTTTT 643


>gi|254252836|ref|ZP_04946154.1| Nuclease subunit of the excinuclease complex [Burkholderia dolosa
           AUO158]
 gi|124895445|gb|EAY69325.1| Nuclease subunit of the excinuclease complex [Burkholderia dolosa
           AUO158]
          Length = 669

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 216/656 (32%), Positives = 332/656 (50%), Gaps = 57/656 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D AG VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDAAGTVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R S   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDRQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISEEDYAVDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-----------------DSEST--- 281
            D  ++       C+       G++ G   +F                     ++ +   
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGDEPEPTDESGDR 317

Query: 282 ---------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYK 326
                           A++L  F+ Q Y     P  +++S       LLE+   +Q G+K
Sbjct: 318 PADEGADARAASASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLEL-LSEQVGHK 376

Query: 327 VKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIE 383
           V +    QG++R  +  A  NA  +  + LS + S Q   +   +   L        RIE
Sbjct: 377 VSLIRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALAETLGLECDDLATLRIE 436

Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI 443
            +D SH MG +     VV   +     +YR++N+    +   DD A MR VL RR+ +++
Sbjct: 437 CFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMV 494

Query: 444 K---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITI 494
           +         +   ++    ++  +    P++V++DGGKGQ+  A+ V  +L ++  + +
Sbjct: 495 EQAAQSAAADDAAGIDGESTRRAEASSLLPNIVLIDGGKGQVEIARQVFTELGLDTSM-L 553

Query: 495 ISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA 553
           + +AKG  R  G+E      G   L L      L  + ++RDEAHRFAIT  R +R KA 
Sbjct: 554 VGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKAR 613

Query: 554 -YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             S L+E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS  +A +IY   H
Sbjct: 614 QTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVEGISHALAEQIYKQLH 669


>gi|315504735|ref|YP_004083622.1| excinuclease abc, c subunit [Micromonospora sp. L5]
 gi|315411354|gb|ADU09471.1| excinuclease ABC, C subunit [Micromonospora sp. L5]
          Length = 649

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 187/642 (29%), Positives = 306/642 (47%), Gaps = 41/642 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA NL+ R+ SY         R   M+    ++ +   
Sbjct: 13  TIPESPGVYRFRDGTGRVIYVGKARNLRSRLNSYFADPVGLHQRTRQMVFTAESVDWITV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL  E   IK+  PRFN+  RDDKS+PY+ +T   + P L   R        YFG
Sbjct: 73  ATEVEALQQEYTWIKQYDPRFNVRYRDDKSYPYLAVTLDEEYPRLQVMRGVKRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +++E++
Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIGKCSAPCVGSVTAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V     F++G   ++  ++ + M  A+ + ++E A   RD +AAL         +  
Sbjct: 193 REIVDGFCDFMAGRTDSMVRRLEKEMLDASEQLEFERAARLRDDVAALRRAMEKQTVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  +   +   A +Q      G+ RG   + ++   E T   ++ +F  Q Y   
Sbjct: 253 DGTDADVVAFADDPLEAAVQVFHVRGGRVRGQRGWVVEKTEELTTGDLVHHFCTQVYGGE 312

Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +   P  +L+ E   +   L      + G +V + VP++G+KR ++E    NA  +  
Sbjct: 313 QGEADVPRELLVPELPGDADALADWLTARRGSRVSLRVPQRGDKRSLLETVERNARDALA 372

Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +          +    L +     A+   P RIE +D S I G   V  MVV  +    K
Sbjct: 373 RHKLKRAGDLTTRSQALDEIADALAMNTSPLRIECFDVSQIQGTDVVASMVVFEDGLPRK 432

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN---------------EENLNFHPK 454
           ++YR+F +        DD + M  VL RRF++ +                 +        
Sbjct: 433 SEYRRFIVRG----ATDDLSAMSEVLRRRFARYLDARAETGELGEETASDPDRPGIDPTT 488

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
            +   F   P +V++DGG  Q++AA   L +L +++ + +  +AK  +     E +    
Sbjct: 489 GRPRKFAYPPQLVVVDGGPPQVAAAAKALAELGIDD-VALCGLAKRLE-----EVWLPDD 542

Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573
              ++L      LY +QR+RDEAHRFAIT HR+RR K    S LD + G+G +R++ LL+
Sbjct: 543 EFPVILPRTSEALYLLQRVRDEAHRFAITFHRQRRSKRMTESALDNVPGLGEVRRKALLR 602

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
            FG++K +S ++ E +  + G+ ++ A  I      +T+ T 
Sbjct: 603 HFGSLKRLSSATVEEITEVPGVGRRTAEAILAALDGSTTTTE 644


>gi|330860549|emb|CBX70849.1| UvrABC system protein C [Yersinia enterocolitica W22703]
          Length = 610

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 216/618 (34%), Positives = 338/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  ++  + +   ++  I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDKAGTVIYVGKAKDLKKRLTSYFRAHVASRKTETLVKNIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++   K P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADKHPRLAIHRGAKHEKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y 
Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVPGLVSEEEYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +        + 
Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLISRMEEASRSLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
              D   +  +  LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY     
Sbjct: 250 EDLDVIDVAFDAGLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +
Sbjct: 310 VRTLPGEILLDFTLAEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    +K+  K   L     R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 370 LSQQSTIHQRMKELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL+RR+ + + +++                PDV+ +DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           LS A  V   LNV   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAITGHRQRRSKVKNTSALELIEGVGPKRRQILLKYMGGLQPLLNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            +  IS+ +A KIYN   
Sbjct: 592 KVPSISQALAEKIYNALK 609


>gi|148652021|ref|YP_001279114.1| excinuclease ABC subunit C [Psychrobacter sp. PRwf-1]
 gi|189038077|sp|A5WBX3|UVRC_PSYWF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|148571105|gb|ABQ93164.1| Excinuclease ABC subunit C [Psychrobacter sp. PRwf-1]
          Length = 614

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 201/614 (32%), Positives = 310/614 (50%), Gaps = 29/614 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+ML   G +LYVGKA +L+ R+ SY        +   ++S+I++I   +T
Sbjct: 22  KRLPNLPGVYKMLGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVSRIHDIETIIT 81

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYF 122
            +E EALLLE N+IK  +P +N+LLRDDKS+ Y+ I+     P L   R  +   +G +F
Sbjct: 82  RSETEALLLEQNLIKEHRPPYNVLLRDDKSYLYVFISADQPYPRLAYGRGKAKHQKGKFF 141

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S  A ++T+  +Q+ F +R C ++ FR R RPCL +QIKRC  PC G +S+E+Y  
Sbjct: 142 GPFPSAHAAKETLVLMQKMFQMRQCTNTFFRQRKRPCLEYQIKRCRAPCVGLVSAEEYAA 201

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            V    +FL G + ++   +   M  +    D+E A  +RD+L+ L  +Q+         
Sbjct: 202 DVQNTIRFLKGDSSDIHTTLIEKMEHSAEALDFEKAAFYRDQLSMLREVQSRQAVYTVQG 261

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298
             D  S+     + C+       G+  G   +F   DS       LS F+  FY      
Sbjct: 262 EADIISIASQAGMTCVNVLTVRGGRVLGGKNYFPDVDSNEPINDNLSAFITSFYFQVTDD 321

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I++S E  +   L+ +    +  K  I    +  + + ++ A +NAH +   KL  
Sbjct: 322 LPAEIIISHELPDQMALQEALSTYFEAKTVIKTNVREHRAEWLDLAKLNAHNALKTKLGD 381

Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
            +          +  +         IE +D SH MG + +   VV  + G  K  YR++ 
Sbjct: 382 YLELHARFAALKEVLEPVSQSSIDTIECFDISHTMGEATIASCVVFDQGGARKRDYRQYA 441

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +H   V+  DD A M   + RR+ +                      PDV+++DGGKGQL
Sbjct: 442 IHG--VQDGDDYAAMAQAITRRYKK-------------------HPLPDVLLIDGGKGQL 480

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           S A+ VL +L + N   +I +AKG  R AG+E     + E L L M    L+ I  +RDE
Sbjct: 481 SMAKNVLTELGLLNDTLLIGVAKGEGRKAGLEVLHFIEHEPLDLPMDSKALHLIMNIRDE 540

Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT HRK+R K+ + S L+ I G+G  R+R LL  FG ++ +  +S + L  + GI
Sbjct: 541 AHRFAITAHRKKRDKRRSSSVLEAIPGLGEKRRRDLLNHFGGLQQLLGASQQELEGVNGI 600

Query: 596 SKKIACKIYNHFHK 609
            K +A  IY   H+
Sbjct: 601 GKVMANTIYKVLHE 614


>gi|119897939|ref|YP_933152.1| excinuclease ABC subunit C [Azoarcus sp. BH72]
 gi|119670352|emb|CAL94265.1| excinuclease ABC subunit C [Azoarcus sp. BH72]
          Length = 606

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 211/609 (34%), Positives = 317/609 (52%), Gaps = 26/609 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + E PGVY+M+    +VLYVGKA NL++R+ SY      + RI  M++Q+  +  T T 
Sbjct: 19  TLTEEPGVYRMIGAEDKVLYVGKAKNLKRRVSSYFQRTLLSPRIAMMVAQVQRVDVTATR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+IK L PR+NIL RDDKS+PYI +T     P L  HR +      YFGP
Sbjct: 79  SEAEALILENNLIKSLAPRYNILFRDDKSYPYIELTGDE-FPQLAYHRGAFAKGARYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQ+TF LR+C +SVF++R+RPCLL QIKRC+GPC G +S+E Y   V
Sbjct: 138 FPSAWAVRESIQLLQKTFQLRTCENSVFQNRSRPCLLHQIKRCTGPCVGLVSAEDYAADV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + + +   M +A    D+E+A   RD++ AL  + +       +   
Sbjct: 198 RLASRFLDGHGTEVIDALTDKMQRAAAALDFEAAGGCRDQIRALQAVLHRQFVDSGKDED 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +      L C+       G++ G    F    +       L  F+ Q Y + P P 
Sbjct: 258 VDILAAVEEDGLLCVNIAMVRGGRHLGDRPQFPSGAAACGAEDGLLAFVEQHYGEHPMPA 317

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +L++   E    +  +  +       +  P+    R  +E A  NA  +   +      
Sbjct: 318 RLLVNTAVE---AVRETLAEIAEKPAAVVAPRFAVDRGWMEMAEKNARLAIQARARDTGR 374

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +  L+       L   P RIE +D SH MG + V   VV       + +YR++N+    
Sbjct: 375 AEQRLEALRDALGLADPPLRIECFDISHTMGEATVASCVVCEAGQMKRGEYRRYNI--AG 432

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A MR  LERR+ ++   E                 PD++++DGGKGQ++AA G
Sbjct: 433 ITPGDDFAAMRQALERRYGKVAAGE--------------GLRPDLILIDGGKGQVAAALG 478

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
           +L +L +E+ I +I +AKG  R  G+E   F  + E LVL      L+ +  +RDEAHRF
Sbjct: 479 ILAELGLED-IAMIGVAKGEGRKVGLETLVFPDEREGLVLGGGHAALHLVTEIRDEAHRF 537

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR RR K    S L++I G+GP R+R LL +FG +  +  ++ E L  ++GI++ +
Sbjct: 538 AITGHRARRAKTRVGSKLEDIPGVGPTRRRNLLATFGGLDGVRAATVEDLCRVDGINRTL 597

Query: 600 ACKIYNHFH 608
           A +I+    
Sbjct: 598 AEQIHQALR 606


>gi|241662613|ref|YP_002980973.1| excinuclease ABC subunit C [Ralstonia pickettii 12D]
 gi|240864640|gb|ACS62301.1| excinuclease ABC, C subunit [Ralstonia pickettii 12D]
          Length = 657

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 213/637 (33%), Positives = 329/637 (51%), Gaps = 48/637 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D+ G VLYVGKA +L+KR+ SY +    + RI  M+++I  I  TV  
Sbjct: 36  RLPNLPGVYRYFDVQGNVLYVGKARDLKKRVSSYFNKTLLSPRIAMMVAKIARIDTTVVR 95

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H  P +  +R ++  +  YFGP
Sbjct: 96  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRRHQYFGP 154

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RCSGPC   IS+E Y   V
Sbjct: 155 FPSAHAVRESMQILQKVFRLRTCEDTVFNNRTRPCLLHQIHRCSGPCVQAISAEDYARDV 214

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240
             A  FL G    + + +   M +      +E A I RD++ ALS +            +
Sbjct: 215 ANAASFLQGRQDEVMQTLQDKMQRYAESLAFEQAAIVRDQIGALSTVLKQQSVEEVGHAS 274

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276
            +D  ++      AC+       G++ G   +F                           
Sbjct: 275 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADSVSAAETSR 334

Query: 277 DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336
           D+E   + IL  F+ Q Y D+  P  +++S     T L+  +  +Q G ++ +    QG 
Sbjct: 335 DAERMASDILEAFVAQHYLDQFVPPVLVVSHPILATELI-DALAEQAGRRISVVRQPQGG 393

Query: 337 KRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHIMGC 393
           +R  +E A   A  S  ++LS + S Q   +   +   +        R+E +D SH  G 
Sbjct: 394 RRAWLEMAEKGAELSLMRRLSEQGSQQARTRALAETIGIDLEDLAALRVECFDISHTAGE 453

Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453
           +     VV   +    ++YR++N+    +   DD A MR VL RR+ ++++         
Sbjct: 454 ATQASCVVFHGHAMQNSEYRRYNIQD--ITPGDDYAAMRQVLTRRYQKIVEQ-------- 503

Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513
                  P+ P +V++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+E     
Sbjct: 504 --AGEDAPNMPTIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLETLVFA 560

Query: 514 KGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLL 571
            G   L L      L  + ++RDEAHRFAIT  R +R KA   S L+EI GIG  R++ L
Sbjct: 561 DGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKRRQRL 620

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L  FG ++ +  +S + LA++EGIS+ +A +IY   H
Sbjct: 621 LARFGGLRGVMAASVDELATVEGISQTLAEEIYRQLH 657


>gi|332284705|ref|YP_004416616.1| Protein uvrC [Pusillimonas sp. T7-7]
 gi|330428658|gb|AEC19992.1| Protein uvrC [Pusillimonas sp. T7-7]
          Length = 607

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/614 (35%), Positives = 328/614 (53%), Gaps = 29/614 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+ LD  G VLYVGKA +L+KR+ SY      + RI HM++++  +  TVT 
Sbjct: 13  DLPHLPGVYRHLDAEGTVLYVGKARDLKKRVSSYFQKTPSSPRIAHMVARVERLEVTVTR 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IKRLKPR+NIL RDDKS+PY++ +  H+ P +  +R S++ +G YFGP
Sbjct: 73  SEAEALLLENNLIKRLKPRYNILFRDDKSYPYLMFS-GHQTPRIAYYRGSTSGKGRYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  AV +TI  LQR F LR+C DSVF +R+RPCLL+QI RCS PC   IS+  Y   V
Sbjct: 132 YPNAWAVRETIQILQRVFRLRTCEDSVFANRSRPCLLYQIGRCSAPCVNLISAADYQADV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYNR 241
             A +FL G  + +   I + M+QA+   ++E A + RD++ AL+ +           + 
Sbjct: 192 DRAVQFLDGRANEVMRDIEQRMHQASEALEFEKAAVLRDQVGALAKVLQQQSMEKVGNDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
           +D  ++       C+       G++ G   FF     + + A +L+ F+ Q Y D   P 
Sbjct: 252 VDVIAVASAGGRVCVNLAMIRGGRHLGDKPFFPTHTLDDSPADVLAAFVAQHYLDSGMPA 311

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++ S    +  L+     +Q G + ++ +  QG ++  +EQA+ NA  +  + L+   +
Sbjct: 312 VLVCSHALPDPDLI-KLLSEQTGVRARVLIRPQGLRKIWLEQAVKNAELALARLLTESSA 370

Query: 362 HQMILKDFTKKFALPHIP-----KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                        +           IE +D SH  G +     VV   +    + YR++N
Sbjct: 371 RVARSLALATALDMDTDEAALDAMHIECFDISHTAGEATQASCVVYKHHDMQPSLYRRYN 430

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A MR VL RRFS++   +                 P VV++DGGKGQ+
Sbjct: 431 I--AGIMPGDDYAAMRQVLTRRFSRVADGQ--------------AEMPGVVLIDGGKGQV 474

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVLNMRDPILYFIQRLRD 535
             A+ V  +L ++ R TI+ +AKG  R  G+E   FV   E + L +    L  + ++RD
Sbjct: 475 EVARQVFVELGLDTR-TIVGVAKGEGRKVGLETLVFVDGREPVALGIESAALMLVAQIRD 533

Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT  R +R KA   S L+EI GIG  R++ LL  FG    +  +S + L S++G
Sbjct: 534 EAHRFAITGMRAQRAKARNVSRLEEIEGIGARRRQKLLARFGGFTGVVDASIDDLRSVDG 593

Query: 595 ISKKIACKIYNHFH 608
           IS ++A +IY    
Sbjct: 594 ISDELAERIYQALR 607


>gi|146328977|ref|YP_001209225.1| excinuclease ABC, C subunit [Dichelobacter nodosus VCS1703A]
 gi|229558026|sp|A5EW70|UVRC_DICNV RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|146232447|gb|ABQ13425.1| excinuclease ABC, C subunit [Dichelobacter nodosus VCS1703A]
          Length = 607

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 217/608 (35%), Positives = 327/608 (53%), Gaps = 23/608 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVYQM D  G VLYVGKA NL++R+  Y      + +   ++  + +I+ T T TE 
Sbjct: 19  TLSGVYQMRDQNGTVLYVGKAKNLRQRLSHYFQKTGLSVKTRALMRAVYDIQTTSTPTEA 78

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N+IK+ +P+FNILLRDDKS+PYI ++ +H  P L+ +R +      +FGP+ +
Sbjct: 79  EALLLENNLIKQYQPKFNILLRDDKSYPYICLS-QHDFPRLFLYRGARKNG-DFFGPYPN 136

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
           V +    +  LQ+ F LR C DS F++R+RPCL +QIKRC  PC G+IS+E Y + V  A
Sbjct: 137 VQSAHHALAILQKVFRLRPCLDSFFKNRSRPCLQYQIKRCYAPCVGKISAEMYAQTVQHA 196

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIYNRMDCF 245
           + FL+G + +L + +  +M QA+  + YE A I RD+++ L  IQ           +D  
Sbjct: 197 RDFLTGNSEHLLQTLTEHMLQASAAQQYERAAIVRDQISELRTIQQKQSMVVYAANVDVL 256

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILL 305
           ++      AC+Q  FF  G +  +  FF K         IL  F+ QFY  +P P  I+L
Sbjct: 257 AVATAYGKACVQVLFFRDGHSVTSQAFFPKLPELLPAGAILQAFIGQFYHQRPVPSQIVL 316

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           SE   +   +     +   + V +T   +  ++K +     NA  +    L+ ++S    
Sbjct: 317 SEALPDMDAVSEFLSQMSAHTVTLTTQPRAIRKKWLRMTQENARLNLRLHLAQKLSMHER 376

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K   + F    +P+R+E  D SH+ G   V   VV    G VK+ YR++    N +   
Sbjct: 377 FKALAQAFDWQKMPQRLECVDISHMQGEYTVASCVVFDRRGAVKSDYRRY--KINGITGG 434

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M+ V++RRF++L K E                 PDV  +DGG+GQL  A  V ++
Sbjct: 435 DDYAAMKQVIKRRFARLKKGE--------------GVMPDVFFVDGGRGQLQQAIAVFEE 480

Query: 486 LNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           + +E  + +I +AKG  R AG+E+F F  +     L      +  I  +RDEAHRFAI+ 
Sbjct: 481 MQIEG-VQLIGVAKGEGRKAGLEQFWFPHENRPRTLPADSQAMQLIIHIRDEAHRFAISA 539

Query: 545 HRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR+ R KK   S L+EI  IG  R++ LLQ FG +  + ++SPE +  + GIS K+A +I
Sbjct: 540 HRRGRDKKVRVSLLEEIPNIGRKRRQALLQHFGNLAGLMQASPEDITRVPGISVKLAAQI 599

Query: 604 YNHFHKNT 611
           Y   H+  
Sbjct: 600 YAALHQGE 607


>gi|162420815|ref|YP_001606522.1| excinuclease ABC subunit C [Yersinia pestis Angola]
 gi|162353630|gb|ABX87578.1| UvrABC system, C protein [Yersinia pestis Angola]
          Length = 617

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 214/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  +     +   ++  I  I  TV
Sbjct: 18  LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 77

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 78  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 136

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y 
Sbjct: 137 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 196

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   + FLSG +  +  ++   M +A+ +  +E A   RD++ A+  +        + 
Sbjct: 197 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 256

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
              D   +  +  LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY     
Sbjct: 257 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 316

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +
Sbjct: 317 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 376

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    +K+  K   L     R+E +D SH MG   V   VV   N  V+++YR++
Sbjct: 377 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANCPVRSEYRRY 435

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL+RR+ + + +++                PDV+ +DGGKGQ
Sbjct: 436 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQ 478

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           LS A  V   LNV   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 479 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQ 538

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 539 HIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQVLLKYMGGLQPLFNASVEEIA 598

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KI+N   
Sbjct: 599 KVPGISQALAEKIHNALK 616


>gi|158313894|ref|YP_001506402.1| excinuclease ABC subunit C [Frankia sp. EAN1pec]
 gi|229558031|sp|A8KYR0|UVRC_FRASN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|158109299|gb|ABW11496.1| excinuclease ABC, C subunit [Frankia sp. EAN1pec]
          Length = 692

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 197/664 (29%), Positives = 311/664 (46%), Gaps = 61/664 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA +L+ R+ +Y    +    R  HM++   ++ +TV 
Sbjct: 13  SIPETPGVYRFRDEHGRVIYVGKAKSLRARLANYFADIHTLHPRTQHMVTTAGSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+P + +T   + P L   R        YFG
Sbjct: 73  STEVEALQLEYTWIKEFDPRFNVRYRDDKSYPSLAVTLYEEFPRLQVMRGPKRRGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F  R+C+  VF+      RPCLL  I RCS PC G + ++ +
Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIDRCSAPCVGRVDADAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            + V +   F+SG       ++ R M  A   ++YE A   RD + AL         +  
Sbjct: 193 RQIVDDFCDFMSGQTGRYLRRLEREMRAAAEAQEYERAARLRDDIGALRRAVEKQAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
                D  +   ++  A +Q  +   G+ RG   + +    + T A ++  FL Q Y D 
Sbjct: 253 DGTDADVIAFAQDELEAAVQIFYVRGGRVRGQRGWVVDKLEDVTTADLVEQFLTQEYLDG 312

Query: 297 ------------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
                                      P  IL+ E   +   +     +  G +V + VP
Sbjct: 313 VRPAGTAGTADTADTADTADPAPAAQIPREILVPELPPDAEAVAELLERARGARVDLRVP 372

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNS 388
           ++G+KR ++E    NA ++ T   +       +    L D  +   LP  P RIE +D S
Sbjct: 373 RRGDKRTLMETVERNAKQAFTLHRTKRAGDLTARSRALADLQEALELPDAPLRIECFDVS 432

Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE- 447
           +  G   V  MVV  +    K++YR+F++    V  QDD A MR  + RRFS+ +     
Sbjct: 433 NTQGTDVVASMVVFEDGLPRKSEYRRFSIRG--VDGQDDVASMRETVHRRFSRYLAERAR 490

Query: 448 -------------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE---NR 491
                        +       +   F   P++V++DGG  Q++AA   L +L +E     
Sbjct: 491 TGELEEYPGAPTGDDEAPETGRPRRFAYPPNLVVVDGGPPQVAAAARALDELGIESGPGG 550

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
           + +  +AK  +     E +   + E ++L      LY +QR+RDEAHRFAIT HR++R  
Sbjct: 551 VALCGLAKRLE-----EVWLPDQDEPVILPRTSEALYLLQRVRDEAHRFAITYHRQKRST 605

Query: 552 AA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +   S LD++ G+G  R++ LL+ FG+V  +  +  E +A + GI  + A  I     ++
Sbjct: 606 SMVASALDDVPGLGETRRKALLRHFGSVAKVRAAGAEEIAQVPGIGPRTAEAIVAALARS 665

Query: 611 TSHT 614
              T
Sbjct: 666 APGT 669


>gi|227488848|ref|ZP_03919164.1| excinuclease ABC subunit C [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542157|ref|ZP_03972206.1| excinuclease ABC subunit C [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091270|gb|EEI26582.1| excinuclease ABC subunit C [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181986|gb|EEI62958.1| excinuclease ABC subunit C [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 682

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 191/655 (29%), Positives = 317/655 (48%), Gaps = 53/655 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D    V+YVGKA NL+ R+ +Y     +   R   M++   ++ +TV 
Sbjct: 15  TIPEEPGVYKFRDAHKTVIYVGKAKNLRARLANYFQPLQDLHPRTRQMVTTGASVEWTVV 74

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IK+  P+FN++ RDDK++P + ++ K + P  + +R        YFG
Sbjct: 75  ASEVEALQLEYTWIKKFDPKFNVMYRDDKTYPMLAVSLKEQYPRAFLYRGPRRKGVRYFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F LR+C+  VF  +    RPCLL  I +CS PC G +S E++
Sbjct: 135 PYSHAWAIRETLDLLTRVFPLRTCSKGVFNRQRQLERPCLLGYIDKCSAPCVGRVSVEEH 194

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V+    F++G    +   + R MNQA  + D+E A   RD L A+S        ++ 
Sbjct: 195 REIVNGFCSFMAGQTDAVTRSLKREMNQAAEELDFEKAARLRDNLGAISKAMERQSVVFG 254

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +   ++  A +Q      G+ RG   + ++ + +   A+++  FL QFY D 
Sbjct: 255 DGTDADLIAFVTDELEAAVQIFHVRGGRIRGQRGWVVEKEGDEPIAELMQDFLMQFYNDA 314

Query: 298 P----------------------------CPENILLSEEAEETSLLEISFFKQYGYKVKI 329
                                         P+ +L+ E   +   ++       G ++ +
Sbjct: 315 SLAKQETAVELERRGVDQLSHTEVSHNSVVPKEVLVQELPLDVEAVQEQLEHLRGAQISL 374

Query: 330 TVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIEIY 385
            VP++GEKR+++E    NA  +  Q          +    ++   +   +   P RIE  
Sbjct: 375 RVPQRGEKRELMEVVERNAKEALKQHKLKRVGDLTARSAAIEQLKEYLEMDEAPLRIECT 434

Query: 386 DNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN 445
           D SHI G   V  +VV  +    K+ YR++ +        +D A +  V  RRF +  ++
Sbjct: 435 DISHIQGTDVVASLVVFEDGLPKKSDYRRYIIRDE---PGNDVASIAEVTRRRFKRHNED 491

Query: 446 E----ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501
           +    E   F   +    F   P + I+DGG  Q+ AA  V ++L + + + +I +AK  
Sbjct: 492 KRAMPEEDEFTDVEATKRFAYPPQLFIVDGGLPQVHAAAEVFEELGITD-VKLIGLAKRL 550

Query: 502 KRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEI 560
           +     E +     + L+L      LY +Q +RDEAHRFAIT HR++R K    S LD I
Sbjct: 551 E-----EVWIPDDDDPLILPRSSEGLYLLQHVRDEAHRFAITFHRQKRSKRLRVSELDSI 605

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
            G+G  RK  L++ FG+VK +  +S + +  ++GI  K+A  I++  H +T   P
Sbjct: 606 RGLGAQRKTDLVKHFGSVKRLKEASLDQIEEVKGIGPKLAESIFSALHPDTGSRP 660


>gi|109898764|ref|YP_662019.1| excinuclease ABC subunit C [Pseudoalteromonas atlantica T6c]
 gi|119367684|sp|Q15T23|UVRC_PSEA6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|109701045|gb|ABG40965.1| excinuclease ABC, C subunit [Pseudoalteromonas atlantica T6c]
          Length = 608

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 205/614 (33%), Positives = 329/614 (53%), Gaps = 25/614 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA NL+ R+ SY  S   + +   ++ QI ++  TV
Sbjct: 13  LKDLTNQPGVYRMYNHKQDVIYVGKAKNLKNRVSSYFRSQVDSIKTQSLVKQIAHMDVTV 72

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E EA +LE N IK+ KPR+N+LLRDDKS+P+I ++  H+ P L  HR     +G YF
Sbjct: 73  VHSEAEAFILENNFIKKYKPRYNVLLRDDKSYPFIFLS-DHQHPRLANHRGPKKRKGEYF 131

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+ S  AV +++ ++QR F +R C DS +R R+RPCL +Q++RC+GPC    +S E Y 
Sbjct: 132 GPYPSAWAVRESLRTMQRIFPIRQCEDSYYRARSRPCLQYQLQRCAGPCVEGLVSDEDYQ 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V  A+ FL G N  + + + ++M +A+    +E+A  +RD+++AL+ +Q       N+
Sbjct: 192 AQVDLARMFLKGKNKQVIDSLVQHMERASTDLRFEAAARYRDQISALNKVQEQQWVSGNQ 251

Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DK 297
             MD F   +   +A IQ  F    +  G+ +F+ K  +E+T+ ++   F+ QFY   +K
Sbjct: 252 EEMDVFGFAYRNGIASIQGLFIRDNKLLGSKSFYPKVPAEATDEEVFQSFILQFYLAGNK 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I+   E  E   +E    K+ G +++     + EKR+ ++ A  NA  +   K  
Sbjct: 312 VIPKQIVTPLELNEQGAIEELLTKEAGRRIQFYRGARDEKRRYLDLANTNAENALIAKQG 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + S      +  K        +R+E +D SH  G   V   VV    G  K  YR+FN+
Sbjct: 372 QQKSVFARYTELEKILEFEQPIQRMECFDISHTSGQLTVASCVVFNREGPFKADYRRFNI 431

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M   L RR+  +  + +                PD++ +DGGKGQL+
Sbjct: 432 EG--ITPGDDYAAMAQALARRYRDVKDDSK---------------IPDILFIDGGKGQLT 474

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDE 536
            A+   +    E +  +I +AKG  R AG+E   +      + L+     L+ IQ +RDE
Sbjct: 475 QAEDYFEDWKHEKKPLLIGVAKGSSRKAGLETLILAGNHATIPLSGDSIALHLIQHIRDE 534

Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           +HRFAIT HR RR+K    S L+ I G+G  R++ LL+  G ++ I ++S   +A++ GI
Sbjct: 535 SHRFAITGHRARRQKDKKTSKLESIPGVGAKRRQSLLKYMGGLQGILQASRSEIANVPGI 594

Query: 596 SKKIACKIYNHFHK 609
           S ++A  IY+H H 
Sbjct: 595 SAELADTIYDHIHN 608


>gi|330469171|ref|YP_004406914.1| excinuclease ABC subunit C [Verrucosispora maris AB-18-032]
 gi|328812142|gb|AEB46314.1| excinuclease abc, c subunit [Verrucosispora maris AB-18-032]
          Length = 643

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 189/640 (29%), Positives = 309/640 (48%), Gaps = 41/640 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA NL+ R+ SY         R   M++   ++ +   
Sbjct: 13  TIPESPGVYRFRDGTGRVIYVGKAKNLRSRLNSYFADLLGLHDRTRQMVTTAESVDWVTV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK+  PRFN+  RDDKS+PY+ +T   + P L   R +      YFG
Sbjct: 73  GTEVEALQLEYTWIKQYDPRFNVRYRDDKSYPYLAVTLDEEYPRLQVMRGAKRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G ++++++
Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSAGVFKRAGQVGRPCLLGYIGKCSAPCVGSVTAQEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V     F++G   ++  K+ R M QA+ + ++E A   RD +AAL         +  
Sbjct: 193 REIVDGFCDFMAGRTDSMVRKLEREMTQASAELEFERAARLRDDVAALRRAMEKQTVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  +   +   A +Q      G+ RG   + ++   + T   ++ +F  Q Y   
Sbjct: 253 DGTDADVVAFADDPLEAAVQVFHVRGGRVRGQRGWVVEKTEDLTTGDLVHHFCTQVYGGE 312

Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +   P  +L+ E   +   L        G +V + VP++G+KR ++E    NA  +  
Sbjct: 313 HGETDVPRELLVPELPADAEALADWLATHRGSRVSLRVPQRGDKRALLETVERNAKDALA 372

Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +          +    L + ++   +   P RIE +D S I G   V  MVV  +    K
Sbjct: 373 RHKLKRAGDLTTRSKALDEISEALGMRTAPLRIECFDVSQIQGSDVVASMVVFEDGLPRK 432

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI---------------KNEENLNFHPK 454
           ++YR+F +        DD + M  VL RRF++ +                 +        
Sbjct: 433 SEYRRFIVRG----ATDDLSAMSEVLRRRFARYLDVRAETGEIGEETAADPDRPGVDPTT 488

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
            +   F   P +V++DGG  Q++AA   L +L +++ + +  +AK  +     E +    
Sbjct: 489 GRPRKFAYPPQLVVVDGGAPQVAAAAQALAELGIDD-VALCGLAKRLE-----EVWLPDD 542

Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573
              ++L      LY +QR+RDEAHRFAIT HR+RR K    S LD+I G+G +R++ LL+
Sbjct: 543 DFPVILPRTSEGLYLLQRVRDEAHRFAITFHRQRRSKRMTTSALDDIPGLGDVRRKALLR 602

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            FG++K +S ++ E +  + G+ ++ A  I       TS 
Sbjct: 603 HFGSLKRLSAATVEEITEVPGVGRRTAEAILAALAPATSS 642


>gi|161525331|ref|YP_001580343.1| excinuclease ABC subunit C [Burkholderia multivorans ATCC 17616]
 gi|189349932|ref|YP_001945560.1| excinuclease ABC subunit C [Burkholderia multivorans ATCC 17616]
 gi|229558024|sp|A9ADC9|UVRC_BURM1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|160342760|gb|ABX15846.1| excinuclease ABC, C subunit [Burkholderia multivorans ATCC 17616]
 gi|189333954|dbj|BAG43024.1| excinuclease ABC subunit C [Burkholderia multivorans ATCC 17616]
          Length = 674

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 214/661 (32%), Positives = 329/661 (49%), Gaps = 62/661 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D AG VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDAAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-SHRFPRMAYYRGAVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS+E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISAEDYAVDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS-----------ESTNAQILSYFL 290
            D  ++       C+       G++ G   +F                + T+A  +    
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGDDTDADAVEAPD 317

Query: 291 -----------------------------RQFYTDKPCPENILLSEEAEETSLLEISFFK 321
                                         Q Y     P  +++S       LLE+   +
Sbjct: 318 VPAEAPVGEPGSARDTTASIEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLEL-LSE 376

Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP-- 379
           Q G+KV +    QG++R  +  A  NA  +  + LS + S Q   +   +   L      
Sbjct: 377 QAGHKVSLVRQPQGQRRAWLSMAEQNAQIALARLLSEQGSQQARTRALAETLGLECDDLA 436

Query: 380 -KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438
             RIE +D SH MG +     VV   +     +YR++N+    +   DD A MR VL RR
Sbjct: 437 TLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLTRR 494

Query: 439 FSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
           + ++++         +   ++    +Q  +    P++V++DGGKGQ+  A+ V  +L ++
Sbjct: 495 YEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQVFTELGLD 554

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
             + ++ +AKG  R  G+E      G   L L      L  + ++RDEAHRFAIT  R +
Sbjct: 555 TSM-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAK 613

Query: 549 RKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R KA   S L+E+ G+G  R++ LL  FG ++ +  +S E LAS++GIS  +A +IY   
Sbjct: 614 RAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVDGISHALAEQIYKQL 673

Query: 608 H 608
           H
Sbjct: 674 H 674


>gi|239940412|ref|ZP_04692349.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998]
 gi|239986893|ref|ZP_04707557.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 11379]
 gi|291443843|ref|ZP_06583233.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998]
 gi|291346790|gb|EFE73694.1| excinuclease ABC subunit C [Streptomyces roseosporus NRRL 15998]
          Length = 686

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 183/655 (27%), Positives = 319/655 (48%), Gaps = 61/655 (9%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+P+ PGVY+  D   RV+YVGKA NL++R+ +Y     N   R   M++   ++ +
Sbjct: 10  KPGQIPDSPGVYKFRDEHRRVIYVGKAKNLRQRVANYFQDLANLHPRTRTMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      
Sbjct: 70  TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKKKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ + R F +R+C+  VF++     RPCLL  I +CS PC G ++ 
Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRVTP 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E   +   F++G       ++ ++M QA  + +YE A   RD   AL      +  
Sbjct: 190 EEHRELAEDFCDFMAGRTGTYIRRLEKDMMQAAEEMEYERAARLRDDAEALKRAMEKSAV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +          + ++ + L+Q Y
Sbjct: 250 VLADATDADLIAVAEDELEAALQIFHVRGGRVRGQRGWVTDKVEAVDTSGLVEHALQQLY 309

Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    E+T  +     ++ G +V + +P++G+K+ ++     NA ++
Sbjct: 310 GEERGDAVPKEVLVPALPEDTEAVSQWLAERRGSQVSLRIPQRGDKKDLMATVQRNAQQA 369

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P RIE YD SH+ G   V  MVV  +   
Sbjct: 370 LGLHKTKRASDLTTRSRALEEIAEALGLDTAPLRIECYDISHLQGDDVVASMVVFEDGLA 429

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL------------------ 449
            K++YR+F +     + QDD   M  V+ RRF + ++ +E                    
Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFKRYLQEKERTGEWEEQPPDAAADAASPA 487

Query: 450 --------------------NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
                                     +   F   P +V++DGG+ Q++AA+  L +L ++
Sbjct: 488 AGPAPTGPVPAVGPTAEDGEPREDDGRPKRFAYPPQLVVVDGGQPQVAAAKRALDELGID 547

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549
           + I +  +AK  +     E +     + +VL      LY +QR+RDEAHRFAIT  R +R
Sbjct: 548 D-IAVCGLAKRLE-----EVWLPDDDDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRAKR 601

Query: 550 -KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            K+   SPLD+++G+G  RK+ L++ FG+VK + +++ + +  + GI ++ A  +
Sbjct: 602 AKRIRTSPLDDVSGLGETRKQALIKHFGSVKKLRQATIDEICEVPGIGRRTAESV 656


>gi|92114255|ref|YP_574183.1| excinuclease ABC subunit C [Chromohalobacter salexigens DSM 3043]
 gi|119367641|sp|Q1QVM4|UVRC_CHRSD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91797345|gb|ABE59484.1| Excinuclease ABC subunit C [Chromohalobacter salexigens DSM 3043]
          Length = 604

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 208/613 (33%), Positives = 327/613 (53%), Gaps = 25/613 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + + E PGVY+MLD  G VLYVGKA  L+ R+ SY        +   ++S+I +I+ T+
Sbjct: 9   LKTVSESPGVYRMLDAEGNVLYVGKAKRLKARLASYFRGA-LNAKTQALVSRIEDIQVTI 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSY 121
           T TE EALLLE  +IK  +P +NILLRDDKS+P+I ++D+H  PAL   R       G Y
Sbjct: 68  TRTETEALLLEQTLIKEQRPPYNILLRDDKSYPFIFVSDRHPYPALEFKRARQKRGDGRY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
            GPF S  AV ++++ +Q+ F +R+C DSVF HRTRPCL +QI+RCS PC   I  E+Y 
Sbjct: 128 LGPFPSTTAVRESLSLMQKIFRIRNCEDSVFAHRTRPCLQYQIQRCSAPCVDYIGREEYQ 187

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             +  A   L G +  +  ++ R+M  A+   D+E A   RD++  L  +Q         
Sbjct: 188 RDIDHAIMCLEGRSEQVTAQLTRDMETASQALDFEEAARLRDQIQQLRRLQERQIVDTGD 247

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDK 297
              D F+L       CI       G+  G      +   + T   +L  F+  +Y   ++
Sbjct: 248 GDADIFALAERPGGLCISALAVRGGRMLGARHHMPQNGLDLTAEALLGEFISHYYLGHER 307

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  ++ +    ++ +++ +  ++ G ++++    +G + + +  A  NA +  T +L+
Sbjct: 308 EIPAEVITALPLADSDVIQAALSERAGKRIRLAHQVRGHRAQWLRLAETNAEQHLTTQLA 367

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                            L   P R+E +D SH  G + V   VV  ++G VK+ YR+FN+
Sbjct: 368 NRSQLAKRFASLRDAMQLQETPTRLECFDISHSHGEATVASCVVFDQDGPVKSDYRRFNI 427

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V   DD A MR  L RR+ +L +++  L              P ++I+DGGKGQL+
Sbjct: 428 EG--VAAGDDYAAMRQALTRRYKRLTQDDSKL--------------PGILIVDGGKGQLN 471

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDE 536
            A+ VL+ + +     ++ +AKG  R  G+E  F++    +L L+   P L+ IQ +RDE
Sbjct: 472 MAREVLEDVGITGT-HLLGVAKGTTRKPGLETLFLETVDNSLALDSASPGLHLIQHIRDE 530

Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT HR++R K    S L +I GIGP R+R LL+ FG ++ + ++S + LA + GI
Sbjct: 531 AHRFAITGHRQQRDKQRRTSTLQDIPGIGPKRRRELLRFFGGLQGVRQASRDELARVPGI 590

Query: 596 SKKIACKIYNHFH 608
           S ++A  I+   H
Sbjct: 591 SAQMATTIHQALH 603


>gi|302873283|ref|YP_003841916.1| excinuclease ABC, C subunit [Clostridium cellulovorans 743B]
 gi|307688550|ref|ZP_07630996.1| excinuclease ABC subunit C [Clostridium cellulovorans 743B]
 gi|302576140|gb|ADL50152.1| excinuclease ABC, C subunit [Clostridium cellulovorans 743B]
          Length = 625

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 201/624 (32%), Positives = 327/624 (52%), Gaps = 19/624 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G ++YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKILPDKPGVYLMKNSLGEIIYVGKAKILKNRVRQYFQNSKNHSEKVRTMVKHIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+ KPR+NILL+DDK +P + IT     P ++  R+       
Sbjct: 67  IVTDSEIEALVLECNLIKKHKPRYNILLKDDKQYPMLKITVNEDFPRIFITRNVKKDGAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           Y GP+ ++ AV +T+ ++++ F LR+C   +   +  +RPCL + I  C+ PC+  I+ E
Sbjct: 127 YLGPYTNISAVYETLETIKQLFPLRTCRLDIKAGKIASRPCLNYHIGLCNAPCSNHITKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            Y E + E    LSG + +L + +   MN +    ++E A  +R++L A+  +Q      
Sbjct: 187 AYGEMIKEIVDLLSGKDISLVKDLKEKMNISAEALEFEKAAEYRNKLIAIEKVQEKQKMA 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +   D   L  +   A +Q  F   G+  G   FFL+      N+ I++ F+  FY 
Sbjct: 247 TKRFEDEDFIHLAKDDKDAVVQVFFVREGKVIGREHFFLENVVSEENSAIIAEFISAFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351
                   +   E E+  LLE     + G+KV I +P++GEK+  +     NA     + 
Sbjct: 307 GTAFIPKYIYVPEIEDLELLEQWLTMKRGFKVSIKIPQKGEKKDTLTMVQKNAVITLEQF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + +  + ++  +L++  +  AL  IP RIE YD S+IMG  +VG MV   E     + 
Sbjct: 367 KQKLIKEKEAYTNVLEELAEILALGDIPHRIEAYDISNIMGVDSVGAMVAFEEGKPKNSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILD 470
           YR+F +    V   +D   MR +L RRF + ++  E L       +   F  +PD++++D
Sbjct: 427 YRRFKIKT--VYGANDYDSMREILTRRFKRGLEEIEALTSSEIALEAGKFFVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL++L +   I +  + K            +   E +VL    PI++FI
Sbjct: 485 GGKGQVNVALEVLRELKI--NIPVAGLVKDNNHKTRG---IIYDNEEIVLKSSSPIMHFI 539

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAIT HR  R K+A  S LD+I GIG  R+R LL  FG+++ I  ++ E L
Sbjct: 540 TRIQDEVHRFAITYHRSLRDKRAIKSVLDDIKGIGEKRRRNLLMRFGSIENIKNATLEEL 599

Query: 590 ASIEGISKKIACKIYNHFHKNTSH 613
           A+   + K+ A +I + F K    
Sbjct: 600 ATTPSMDKRSAQQIKDFFKKLEEE 623


>gi|254495967|ref|ZP_05108875.1| excinuclease ABC subunit [Legionella drancourtii LLAP12]
 gi|254354845|gb|EET13472.1| excinuclease ABC subunit [Legionella drancourtii LLAP12]
          Length = 620

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 213/620 (34%), Positives = 343/620 (55%), Gaps = 34/620 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PG+Y+MLD  G VLYVGKA NL+KR+ SY +  N   +   ++SQI +I  +VT 
Sbjct: 16  KLPNEPGIYRMLDQEGTVLYVGKAANLKKRVTSYFNKQNTGVKTRSLVSQIASIEISVTR 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYFG 123
           +E EALLLE+N+IK L+P++N+LLRDDKS+PYI +++    P +  +R       G++FG
Sbjct: 76  SETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSEHPDFPRIESYRSKKKPLAGNFFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ SV AV++TI ++Q+ F +R+C DS F  R+RPCL +QIKRC+ PC   I+S++Y   
Sbjct: 136 PYPSVTAVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPCVHYITSDEYQRS 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V +A +FL G +  + +++A+ M +A L  ++E A + RD++  L  +Q     +     
Sbjct: 196 VQDAMRFLQGKSQLILDELAKRMEEAVLNLNFEEAAMLRDQIKNLRLVQEQQGMMQLSGD 255

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL---------KTDSESTNAQILSYFLRQ 292
            D  ++  +   AC+Q      G+   + +FF          +   +    Q    F+  
Sbjct: 256 ADAIAIEVSPGFACVQCVTIREGKILASQSFFPSVPPNGLEEEPGLDDLWQQTFDAFVSF 315

Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           +Y   P   P  I+          L+ +  +Q G   KI V  +  K + ++ AL N   
Sbjct: 316 YYLGTPERIPPLIITDHALPTHQSLQEALTQQRGKSCKIQVSPRAAKSRWMDFALNNLRV 375

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           +  + ++   + +    +  +  AL     R+E +D SH  G + +   VV    G   +
Sbjct: 376 AIAEYVNKHSTMRSRFHELERFLALTKPIARMECFDISHTQGEATIASCVVFDSEGPNPS 435

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR+FN+    +   DD A M   + RRF +L++ +               S PD++I+D
Sbjct: 436 AYRRFNIEG--ITPGDDYAAMEQAITRRFKRLVEAQ---------------SLPDILIID 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529
           GGKGQ++ AQ VL  LNV   +T++ +AKGP R AG EK   V +   + L      L+ 
Sbjct: 479 GGKGQVTIAQRVLASLNVTT-VTLLGVAKGPSRKAGWEKLILVHEAREVTLPDDSKALHL 537

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q +RDEAHRFAIT HRK+R KK   S L++I G+G  R++ LL  FG ++ ++++  E 
Sbjct: 538 LQHIRDEAHRFAITAHRKKRQKKRLESTLEDIEGVGAKRRQALLHRFGGLRELAKAPLEE 597

Query: 589 LASIEGISKKIACKIYNHFH 608
           +A ++GIS+ +A +I+ HFH
Sbjct: 598 IAKVQGISEHLAQRIFQHFH 617


>gi|238060146|ref|ZP_04604855.1| excinuclease ABC, C subunit [Micromonospora sp. ATCC 39149]
 gi|237881957|gb|EEP70785.1| excinuclease ABC, C subunit [Micromonospora sp. ATCC 39149]
          Length = 671

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 186/642 (28%), Positives = 305/642 (47%), Gaps = 41/642 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA NL+ R+ SY         R   M++   ++ +   
Sbjct: 23  TIPEAPGVYRFRDGTGRVIYVGKAKNLRSRLNSYFADLWGLHQRTQQMVTTAESVDWVTV 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK+  PRFN+  RDDKS+PY+ +T   + P L   R +      YFG
Sbjct: 83  GTEVEALQLEYTWIKQYDPRFNVRYRDDKSYPYLAVTLDEEFPRLQVMRGAKRKGVRYFG 142

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +++E++
Sbjct: 143 PYSHAWAIRETLDLLLRVFPARTCSAGVFKRAGQVGRPCLLGYIGKCSAPCVGSVTAEEH 202

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V     F++G    +  ++ R M +A+   ++E A   RD +AAL         +  
Sbjct: 203 RDIVDGFCDFMAGRTDTMVRRLEREMTEASEALEFEKAARLRDDVAALRRAMEKQTVVLG 262

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  +   +   A +Q      G+ RG   + ++   E T   ++ +F  Q Y   
Sbjct: 263 DGTDADVVAFADDPLEAAVQVFHVRDGRVRGQRGWVVEKTEELTPGDLVHHFCTQVYGGE 322

Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +   P  +L+     +   L      + G +V + VP++G+KR ++E    NA  +  
Sbjct: 323 RGEADVPRELLVPALPADADALADWLTGRRGSRVSLRVPQRGDKRSLLETVERNAKDALA 382

Query: 354 QKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +      S        L + +    +   P RIE +D S I G   V  MVV  +    K
Sbjct: 383 RHKLKRGSDLTIRGKALDEISDALGMRTSPLRIECFDVSQIQGTDVVASMVVFEDGLPRK 442

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI---------------KNEENLNFHPK 454
           ++YR+F +        DD + M  VL RRF++ +                 +        
Sbjct: 443 SEYRRFVIRG----ATDDLSAMSEVLRRRFARYLDVRAETGELGEETAADPDRPGIDPTT 498

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
            +   F   P +V++DGG  Q++AA   L +L +++ + +  +AK  +     E +    
Sbjct: 499 GRPRRFAYPPQLVVVDGGAPQVAAAAQALAELGIDD-VALCGLAKRLE-----EVWLPDD 552

Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573
              ++L      LY +QR+RDEAHRFAIT HR+RR K    S LD + G+G +R++ LL+
Sbjct: 553 EFPVILPRTSEGLYLLQRVRDEAHRFAITFHRQRRSKRMTESALDSVPGLGEVRRKALLR 612

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
            FG++K ++ +S E +  + G+ ++ A  I    +      P
Sbjct: 613 HFGSLKRLAAASVEEMTEVPGVGRRTAEAITAALNPEAGPRP 654


>gi|194290144|ref|YP_002006051.1| excinuclease ABC subunit c [Cupriavidus taiwanensis LMG 19424]
 gi|193223979|emb|CAQ69988.1| UvrABC system protein C (Excinuclease ABC subunit C) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 674

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 207/648 (31%), Positives = 325/648 (50%), Gaps = 50/648 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D  G VLYVGKA +L+KR+ SY +    + RI  M+S+I  I  TV  
Sbjct: 33  RLPGLPGVYRYFDANGNVLYVGKARDLKKRVASYFNKTQLSPRIAMMVSRIARIETTVVR 92

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK L PR+NIL RDDKS+P++ +T  H+ P +  +R ++  +  YFGP
Sbjct: 93  TEAEALLLENNLIKALAPRYNILFRDDKSYPFLKLT-GHRFPRMAYYRGATDRKHQYFGP 151

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RC+GPC   IS + Y   V
Sbjct: 152 FPSAYAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTGPCVNAISEDDYARDV 211

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-----IY 239
             A +FL G    + E +   M Q   + ++E A   RD++AALS +             
Sbjct: 212 ANAARFLQGRQSEVLEGLQGKMEQHAERLEFEQAAAVRDQIAALSTVLKRQAVEEVGGQA 271

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-----STNAQILS------- 287
             +D  ++      AC+       G++ G   +F     E         +          
Sbjct: 272 RDIDVLAVAVEGGRACVNLAMVRGGRHLGDKAYFPAHADEAAMIVEDADERAEGSAEEAG 331

Query: 288 ----------------------YFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGY 325
                                  F+ Q Y ++P P  +++S   ++ ++LE         
Sbjct: 332 AADAADAALPLTVDRIATRVLSAFMVQHYLEQPAPPIVVVSHVPDDAAVLEALALHAGRK 391

Query: 326 KVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRI 382
              +    QG+++  +E A   A  + ++ L+ + S +   +   +   L        R+
Sbjct: 392 VA-LVRQPQGQRKIWLEMAQQGAALALSRHLAEQGSQEARTRALAETIGLDLEDLALLRV 450

Query: 383 EIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQL 442
           E +D SH  G +     VV   +    ++YR++N+    +   DD A MR VL RR+ +L
Sbjct: 451 ECFDISHTAGEATQASCVVYHHHDMQNSEYRRYNIQD--IVPGDDYAAMRQVLTRRYQKL 508

Query: 443 IKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502
           ++  +  +   +    +    P +V++DGGKGQ+  A+ V ++L ++  + ++ +AKG  
Sbjct: 509 VEQIQE-DGGAEGGSEAAALVPQIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEG 566

Query: 503 RSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEI 560
           R  G+E      G   L L      L  + ++RDEAHRFAIT  R RR K    S L+EI
Sbjct: 567 RKVGLETLVFADGRPALELGQGSAALMLVAQIRDEAHRFAITGMRARRAKTRTTSRLEEI 626

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            GIG  R++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 627 EGIGARRRQKLLTRFGGLRGVMAASIDELASVEGISRGLAEEIYRQLH 674


>gi|257055608|ref|YP_003133440.1| Excinuclease ABC subunit C [Saccharomonospora viridis DSM 43017]
 gi|256585480|gb|ACU96613.1| Excinuclease ABC subunit C [Saccharomonospora viridis DSM 43017]
          Length = 658

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 193/641 (30%), Positives = 306/641 (47%), Gaps = 46/641 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P+ PGVY+  D  GRV+YVGKA +L+ R+ SY         R   M++   ++ +TV 
Sbjct: 13  TIPDSPGVYKFRDAGGRVIYVGKAKSLRSRLNSYFTDLAGLHPRTRQMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDK++P + +T   + P L+ +R        YFG
Sbjct: 73  STEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLHVYRGPRKKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F  R+C+  VFR      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSTGVFRRHSQIGRPCLLGYIDKCSAPCVGAVSAERH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V     FLSG    +  K+ R M +A+   ++E A   RD LAAL         +  
Sbjct: 193 REIVEGFCDFLSGRTDQMVRKLEREMAEASEALEFERAARLRDDLAALRKAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +  H++  A +Q      G+ RG   + +    E   + ++  FL QFY  +
Sbjct: 253 DGTDADVIAFAHDELEAAVQIFHVRGGRVRGQRGWVIDKVEEMDVSDLVEQFLSQFYAGQ 312

Query: 298 P------------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
                         P  +L+ E       +E    +  G +V++ VP++G+KR + E   
Sbjct: 313 AELAAETPTDGVVVPREVLVPELPANAESMEQWLSELRGSRVRLRVPQRGDKRTLAETVA 372

Query: 346 INAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401
            NA  + +Q          +    L +  +   L   P RIE  D SH+ G   V  +VV
Sbjct: 373 RNAEEAFSQHKLRRAGDLTARSAALSELQEYLGLDSAPLRIECVDVSHLAGTDVVASLVV 432

Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE-------------- 447
             +    K++YR+F L     +   D A +  V+ RRFS+ +K  +              
Sbjct: 433 FEDGLPRKSEYRRFALREAATEG--DVAAIAEVVRRRFSRYLKETQAQGVERGTETPGVN 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
                   +   F   P+++++DG   Q +AA  VL +L + + + ++ +AK  +     
Sbjct: 491 QALDPETGKPRKFAYPPNLLVVDGAGPQATAAADVLAELGITD-VAVVGLAKRLE----- 544

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPL 566
           E +       ++L      LY +QR+RDEAHRFAI   R++R K    S LD I G+G +
Sbjct: 545 EVWLPADDNPVILPRTSDALYLLQRVRDEAHRFAIRYQRQKRSKRVQESVLDGIPGLGQV 604

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           RK  L++ FG+VK I  ++   +A++ G   + A  ++   
Sbjct: 605 RKAALIKHFGSVKKIREATVAEIAAVPGFGTRTAEVVHAAL 645


>gi|148358620|ref|YP_001249827.1| excinuclease ABC subunit [Legionella pneumophila str. Corby]
 gi|189038064|sp|A5IAT1|UVRC_LEGPC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|148280393|gb|ABQ54481.1| excinuclease ABC subunit [Legionella pneumophila str. Corby]
          Length = 618

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 219/621 (35%), Positives = 340/621 (54%), Gaps = 34/621 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PG+Y+MLD  G VLYVGKA NL+KR+ SY    N   +   ++SQI +I  +VT 
Sbjct: 16  KLPGEPGIYRMLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTR 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE+N+IK L+P++N+LLRDDKS+PYI +++    P +  +R       G++FG
Sbjct: 76  SETEALLLESNLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRIELYRSKKKPPSGNFFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+  V AV +TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC   IS E Y   
Sbjct: 136 PYPGVAAVRETIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLS 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
           V +A +FL G    + +++A  M QA  + ++E A + RD++  L  IQ     +     
Sbjct: 196 VEDAIRFLQGKCQIILDELAERMKQAVSQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGD 255

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292
            D  ++      ACIQ      GQ   + +FF        + +             F+  
Sbjct: 256 ADVIAIEVRPGFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFVGF 315

Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           +Y D     P+ I+ ++   E+  LE    ++ G   KI V  +G K + ++ A+ N   
Sbjct: 316 YYLDTSERIPDLIITNQSITESRSLEYILSQRRGKSCKIQVNPRGVKSRWMDFAVNNLRI 375

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           S  + +S   + +   +   +  AL    +R+E +D SH  G S V   VV    G   +
Sbjct: 376 SVAEYVSKHSTIKSRYQALKQLLALDKNIERMECFDISHTQGESTVASCVVFDTEGPRPS 435

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YR+FN+    +   DD A M   + RRF +LI  +                 PDV+I+D
Sbjct: 436 EYRRFNIEG--ITPGDDYAAMEQAVTRRFKRLIDAQ---------------LLPDVLIID 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529
           GGKGQ+S  + V+  L VE+ IT++ ++KGP R AG EK   V +    VL      L+ 
Sbjct: 479 GGKGQVSIVKRVITSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHL 537

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q +RDEAHRFAIT HRK+R+K    S L+ I G+G  R++ LLQ FG ++ ++++  E 
Sbjct: 538 LQHIRDEAHRFAITAHRKKRQKTRVESTLESIEGVGTKRRQALLQRFGGLRELAKAPLEE 597

Query: 589 LASIEGISKKIACKIYNHFHK 609
           +  ++GI++++A +IY HFH 
Sbjct: 598 ICKVQGINEQLAKRIYEHFHP 618


>gi|309390138|gb|ADO78018.1| Excinuclease ABC subunit C [Halanaerobium praevalens DSM 2228]
          Length = 611

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 209/621 (33%), Positives = 334/621 (53%), Gaps = 34/621 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P  PGVY M D  G ++YVGKA +L+ R++SY   NN T++   ++  I +  + 
Sbjct: 9   QLKELPRQPGVYLMKDETGMIIYVGKAKSLRNRVRSYFRKNNQTYKTQMLVKYIADFDYI 68

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T TEVEA +LEAN+IK+ +P+FNI L+DDKS+PYI IT     P ++K R        Y
Sbjct: 69  MTDTEVEAYILEANLIKKHQPKFNIRLKDDKSYPYIKITKNVDFPRVFKTRIVKNDGAEY 128

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179
           FGPFA VDA+ KT++ ++  F LRSC   +  +    RPCL + I +C GPC G +S E 
Sbjct: 129 FGPFADVDAIYKTLDVIKDIFQLRSCKKELKANDPEDRPCLNYHIDKCLGPCIGAVSKED 188

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +   FLSG    LK+++   M +A  + ++E A   RD L A + +      + 
Sbjct: 189 YHQLIDQVCLFLSGKQSQLKKQVEVQMKEAAAQRNFEKAARFRDALKAFTKLSESQKVMT 248

Query: 240 NRMDCFSLYH----NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           ++     +       +N AC Q      G+  G   F L+       ++ ++ FL+Q+Y 
Sbjct: 249 DKNIDQDVVALVQGTENQACAQLLLIRSGRLLGQEYFILEGTEAELESETMASFLQQYYE 308

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
                P+ +LL+ + EE  LL     +    KV I  P++G+K+K++E A  NA ++   
Sbjct: 309 QAAGIPDELLLNTKLEEQDLLGQRLAEIKNKKVSIQYPQKGDKKKMLEMAERNAQQNLKK 368

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
            + +    +      ++   +   +   P +IE +D S+I G  +V  MVV  +    K 
Sbjct: 369 ENIRSKYEKQRTSGAVEKLGEILGIEKAPYQIEGFDISNIQGTDSVASMVVFKDGRPSKQ 428

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR+F +    V   DD A M+ V+ERR+++L++ ++ L              PD++++D
Sbjct: 429 DYRRFKIKT--VTGPDDFASMKEVVERRYARLLREDKKL--------------PDLILID 472

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQL+AA  +L+ L +   + II +AK  +     E F     E + L    P L  +
Sbjct: 473 GGKGQLNAAYEILEFLGI-GNLPIIGLAKREE-----EIFRPNTSEPITLPHHTPTLQLL 526

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDEAHRFA++ HRK R +   +S LDEI G+G  R+  LLQ FG++  I  +    L
Sbjct: 527 QRVRDEAHRFAVSYHRKLRSRRLTHSMLDEIPGVGETRRTALLQHFGSLAKIREAKIWQL 586

Query: 590 ASIEGISKKIACKIYNHFHKN 610
             ++GIS K A KIY++  ++
Sbjct: 587 KEVKGISGKTARKIYDYLREH 607


>gi|22126325|ref|NP_669748.1| excinuclease ABC subunit C [Yersinia pestis KIM 10]
 gi|45441346|ref|NP_992885.1| excinuclease ABC subunit C [Yersinia pestis biovar Microtus str.
           91001]
 gi|108807240|ref|YP_651156.1| excinuclease ABC subunit C [Yersinia pestis Antiqua]
 gi|108812419|ref|YP_648186.1| excinuclease ABC subunit C [Yersinia pestis Nepal516]
 gi|145598550|ref|YP_001162626.1| excinuclease ABC subunit C [Yersinia pestis Pestoides F]
 gi|165926028|ref|ZP_02221860.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938704|ref|ZP_02227259.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010949|ref|ZP_02231847.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211005|ref|ZP_02237040.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167420270|ref|ZP_02312023.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425822|ref|ZP_02317575.1| UvrABC system, C protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170024580|ref|YP_001721085.1| excinuclease ABC subunit C [Yersinia pseudotuberculosis YPIII]
 gi|218928985|ref|YP_002346860.1| excinuclease ABC subunit C [Yersinia pestis CO92]
 gi|270486579|ref|ZP_06203653.1| excinuclease ABC, C subunit [Yersinia pestis KIM D27]
 gi|21959305|gb|AAM85999.1|AE013847_9 excinuclease ABC, subunit C [Yersinia pestis KIM 10]
 gi|45436206|gb|AAS61762.1| excinuclease ABC, subunit C [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776067|gb|ABG18586.1| Excinuclease ABC subunit C [Yersinia pestis Nepal516]
 gi|108779153|gb|ABG13211.1| Excinuclease ABC subunit C [Yersinia pestis Antiqua]
 gi|145210246|gb|ABP39653.1| Excinuclease ABC subunit C [Yersinia pestis Pestoides F]
 gi|165913318|gb|EDR31940.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922232|gb|EDR39409.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990293|gb|EDR42594.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166208185|gb|EDR52665.1| UvrABC system, C protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961965|gb|EDR57986.1| UvrABC system, C protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167055221|gb|EDR65018.1| UvrABC system, C protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169751114|gb|ACA68632.1| excinuclease ABC, C subunit [Yersinia pseudotuberculosis YPIII]
 gi|270335083|gb|EFA45860.1| excinuclease ABC, C subunit [Yersinia pestis KIM D27]
          Length = 617

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/618 (34%), Positives = 337/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  +     +   ++  I  I  TV
Sbjct: 18  LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 77

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 78  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 136

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y 
Sbjct: 137 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 196

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   + FLSG +  +  ++   M +A+ +  +E A   RD++ A+  +        + 
Sbjct: 197 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 256

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
              D   +  +  LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY     
Sbjct: 257 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 316

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +
Sbjct: 317 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 376

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    +K+  K   L     R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 377 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 435

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL+RR+ + + +++                PDV+ +DGGKGQ
Sbjct: 436 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQ 478

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           LS A  V   LNV   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 479 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQ 538

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 539 HIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQVLLKYMGGLQPLFNASVEEIA 598

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KI+N   
Sbjct: 599 KVPGISQALAEKIHNALK 616


>gi|294628736|ref|ZP_06707296.1| excinuclease ABC, C subunit [Streptomyces sp. e14]
 gi|292832069|gb|EFF90418.1| excinuclease ABC, C subunit [Streptomyces sp. e14]
          Length = 697

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 190/648 (29%), Positives = 308/648 (47%), Gaps = 54/648 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P+ PGVY+  D   RV+YVGKA +L++R+ +Y         R   M++   ++ +
Sbjct: 10  KPGDIPDSPGVYRFRDDHRRVIYVGKAKSLRQRLANYFQDLAGLHPRTRTMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R        
Sbjct: 70  TVVSTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEQFPRVQVMRGHKKKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+  T++ L R F +R+C+  VF++     RPCLL  I +CS PC G IS+
Sbjct: 130 YFGPYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRISA 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E + E   E   F++G       ++   M QA  + +YE A   RD + AL      N  
Sbjct: 190 EDHRELAEEFCDFMAGRTGAYLRRLEERMTQAAEEMEYERAARLRDDIGALKKAMEKNAV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +      E T   ++ + L+Q Y
Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEVTTGALVEHALQQLY 309

Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    +    ++    ++ G  V + +P++G+K+ ++E    NA ++
Sbjct: 310 GEESGDAVPKEVLVPALPDPVEPVQQWLTERRGSGVSLRIPQRGDKKALMETVQRNAQQA 369

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P RIE YD SH+ G   V  MVV  +   
Sbjct: 370 LALHKTKRASDLTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLQ 429

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF---------------- 451
            K++YR+F +     + QDD   M  V+ RRF + +  +E                    
Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVITRRFRRYLAEKEKTGEWAENGQDADGEILAPD 487

Query: 452 ---------------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496
                              +   F   P +V++DGG+ Q++AAQ  L +L +++ I +  
Sbjct: 488 GSPLAGAGLGDGALTEDDGRPKRFAYPPQLVVVDGGQPQVAAAQRALDELGIDD-IAVCG 546

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYS 555
           +AK  +     E +     + +VL      LY +QR+RDEAHRFAIT  R +R K     
Sbjct: 547 LAKRLE-----EVWLPGDDDPVVLPRTSEGLYLLQRIRDEAHRFAITYQRTKRAKRFRAG 601

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           PLDE+ G+G  RKR L++ FG+VK +  ++ + +  + GI  K A  I
Sbjct: 602 PLDEVPGLGETRKRALIKHFGSVKRLRSATIDQIREVPGIGLKTAETI 649


>gi|87122196|ref|ZP_01078079.1| excinuclease ABC, C subunit [Marinomonas sp. MED121]
 gi|86162516|gb|EAQ63798.1| excinuclease ABC, C subunit [Marinomonas sp. MED121]
          Length = 606

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 213/611 (34%), Positives = 339/611 (55%), Gaps = 25/611 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M    G +LYVGKA NL+ R+ SY  +   T +   ++++I++I  T+T 
Sbjct: 14  NLTTRPGVYRMYGK-GELLYVGKAKNLKNRVSSYFRNTGLTTKTMALVNRIDDIEVTLTK 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK+ +P +NILLRDDKS+PYIL++ +H+ PAL   R     +G  FGP
Sbjct: 73  SETEALLLEQTLIKQHRPPYNILLRDDKSYPYILLS-EHQHPALLFRRGGKAGEGKLFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++ ++Q+ F +R C DS + +R+RPCL +QIKRCS PC   IS + Y   V
Sbjct: 132 FPSGTAVRESLATMQKVFKVRQCEDSYYANRSRPCLQYQIKRCSAPCVDLISDQAYANDV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242
              + FL G +  L  +I++NM+ A  + ++E A   RD++  L HIQ            
Sbjct: 192 RHTRMFLEGKDQELLGEISQNMSAAAQEMEFERAAELRDQITQLKHIQEQQYVYGQSGEA 251

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D  +        C+       G+  G+ +++ K   E    ++L+ F+ Q Y    +  P
Sbjct: 252 DVLAALIKPGGHCVHVMMIRGGKVVGSKSYYPKMPLEMNEGELLTSFIAQTYIGGAQDLP 311

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           ++++LS E  +  +L  + F+    KV+I+   +G++ + ++ A +NA +    +L  + 
Sbjct: 312 KSLILSHEFNDMDILSAAIFETSKKKVEISANVRGQRARWLDLAKLNAEQGLQTRLLDKK 371

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
            H        K   L   P+++E +D SH  G + V   VV G  G  K +YR FN+   
Sbjct: 372 HHFSRASALQKLLGLKEAPQQMECFDISHSSGEATVASCVVFGPEGPEKKRYRSFNIEG- 430

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            V+  DD   M+  L RR+ ++   E               + PDV+++DGGKGQL+ AQ
Sbjct: 431 -VEPGDDYGAMKQALTRRYKRVQSGE--------------MTAPDVLLVDGGKGQLTQAQ 475

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHR 539
            VLK+L + + I ++ +AKG  R  G+E  ++   E  +VL      L+ IQ +RDEAHR
Sbjct: 476 EVLKELGLVD-IFLLGVAKGETRKPGLETLYIGSKEDEVVLPPDSAALHLIQHIRDEAHR 534

Query: 540 FAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAITTH ++R KK  +S L+ I G+GP R++ LL +FG ++ +  +S E ++ ++GIS  
Sbjct: 535 FAITTHRKRRDKKRRHSSLEGIPGVGPTRRKNLLTAFGGIQELQAASQEEISKVKGISAG 594

Query: 599 IACKIYNHFHK 609
           +A  IY   HK
Sbjct: 595 MAQDIYAFLHK 605


>gi|2992527|gb|AAC08301.1| DNA excision repair nuclease component [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 608

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 214/613 (34%), Positives = 335/613 (54%), Gaps = 31/613 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  GT T+F K    +   +++  F+ QFY     
Sbjct: 250 DNLDVIGVAFDAGMACVHVLFIRQGKVLGTRTYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVPSCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + IK  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIKESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S + +A
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVKEIA 591

Query: 591 SIEGISKKIACKI 603
            + GIS+ +A KI
Sbjct: 592 KVPGISQGLAKKI 604


>gi|317047634|ref|YP_004115282.1| excinuclease ABC subunit C [Pantoea sp. At-9b]
 gi|316949251|gb|ADU68726.1| excinuclease ABC, C subunit [Pantoea sp. At-9b]
          Length = 610

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/616 (34%), Positives = 334/616 (54%), Gaps = 31/616 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D  G V+YVGKA +L+KR+ SY  S   + +   ++S I  I  TVT 
Sbjct: 13  TVTSQPGVYRMYDATGTVIYVGKAKDLKKRLSSYFRSQVGSRKTEALVSNIQQIDVTVTH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++     P L  HR +   +G YFGP
Sbjct: 73  TETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-GDSHPRLAMHRGAKHAKGEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183
           F +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    ++ E+Y + 
Sbjct: 132 FPNGYAVRETLALLQKVFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVTEEEYAQQ 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
               + FL+G +  +  ++ + M  A+    +E A   RD++ A+  I          + 
Sbjct: 192 TDYVRLFLAGKDDQVLNQLVKRMEAASQALRFEEAARLRDQILAVRRITEKQFVSNQGDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297
           +D   + ++  +AC+   F   G+  G+ ++F K  +++  A+++  FL QFY      +
Sbjct: 252 LDVMGVAYDAGMACLHVLFIRQGKVLGSRSYFPKVPADTELAEVVQTFLGQFYLQGSEAR 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P +ILL     E  LL  S  +  G KV I    +G++ + ++ A  NA  + T +LS
Sbjct: 312 TLPTDILLDFSLPERELLAESLSEMAGRKVNIQSKPRGDRARYLKLARTNAATALTTRLS 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              + Q  L        L     R+E +D SH MG   +   VV   NG +++ YR++N+
Sbjct: 372 QHSTIQQRLAALATFLELD-QINRMECFDISHTMGEQTIASCVVFDRNGPLRSDYRRYNI 430

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M  VL RR+ + +  E+                PDV+++DGGKGQL+
Sbjct: 431 EG--ITPGDDYAAMNQVLLRRYGKALDEEK---------------IPDVILIDGGKGQLA 473

Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533
            A+ V  +L+V   ++R  ++ +AKG  R AG+E  F + +GE   L    P L+ IQ +
Sbjct: 474 QAKQVFAELDVPWDKDRPILLGVAKGSDRKAGLETLFFEAEGEGTSLPPDSPALHVIQHI 533

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RD+AH  AI+ HRK+R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A +
Sbjct: 534 RDDAHNHAISGHRKKRAKVKNTSALETIEGVGPKRRQQLLKYMGGLQPLMNASVEEIAKV 593

Query: 593 EGISKKIACKIYNHFH 608
            GIS  +A KIY    
Sbjct: 594 PGISFALAEKIYYSLK 609


>gi|293396652|ref|ZP_06640928.1| excision endonuclease subunit UvrC [Serratia odorifera DSM 4582]
 gi|291420916|gb|EFE94169.1| excision endonuclease subunit UvrC [Serratia odorifera DSM 4582]
          Length = 610

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 211/618 (34%), Positives = 331/618 (53%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY      + +   ++  I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDATGTVIYVGKAKDLKKRLASYFRLQVGSRKTETLVKNIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-GDTHPRLAIHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S ++Y 
Sbjct: 130 GPFPNSYAVRETLALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEDEYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   + +L+G +  +  ++   M  A+ + ++E A   RD++ A+  +        N 
Sbjct: 190 RQVEYVRLYLAGKDQQVLHQLIERMESASKELNFEEAARVRDQIQAVRRVTERQFVSGNG 249

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
              D   +     +AC+   F   G+  G+ ++F K  S +  A+++  F+ QFY     
Sbjct: 250 DDLDVIGVSFKSAMACLHVLFIRQGKVLGSRSYFPKVPSGTDIAEVVQTFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E +LL  S  +  G K+ I    +G++ + ++ A  NA  + + K
Sbjct: 310 ARTLPGEILLDFTLPEKTLLAESLSELAGRKIAIQSKPRGDRARYLKLARTNAATALSTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+ + +    + +  K   L     R+E +D SH MG   +   VV   NG  +++YR++
Sbjct: 370 LAQQSTIHQRMAELAKTLHLA-EINRMECFDISHTMGEQTIASCVVFDGNGPQRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + ++  +                PDV+ +DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMAQVLRRRYGKALEENK---------------IPDVIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQ 531
           L  A  V   L V   +++  +I IAKG  R AG+E  FFV +GE + L    P L+ IQ
Sbjct: 472 LGMAIDVFNSLEVPWDKSKPLLIGIAKGADRKAGLETLFFVPEGEGISLPSDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR++R K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAITGHRQKRAKVKNTSALESIEGIGPKRRQMLLKYMGGLQPLLNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KI+N   
Sbjct: 592 KVPGISQALAEKIHNALK 609


>gi|255327538|ref|ZP_05368605.1| excinuclease ABC subunit C [Rothia mucilaginosa ATCC 25296]
 gi|255295432|gb|EET74782.1| excinuclease ABC subunit C [Rothia mucilaginosa ATCC 25296]
          Length = 646

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 203/641 (31%), Positives = 319/641 (49%), Gaps = 46/641 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  GRV+YVGKA NL+ R+ SY  S    + +   M+    ++ +TV 
Sbjct: 13  EIPTDPGVYRFRDADGRVIYVGKAKNLRNRLNSYFASPQTLSPKTYAMVHTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+E+L LE   IK   PRFNI  RDDKS+PY+ IT     P     R        YFG
Sbjct: 73  ASEMESLQLEYTWIKEFSPRFNIAFRDDKSYPYLAITVNDVYPRAMVTRGERRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T+++L R F +R+C + VF   ++  RPCLL  I +C+ PC G+IS+E++
Sbjct: 133 PYSQAWAIRETLDALLRVFPVRTCTNGVFNRAKNSGRPCLLGYIDKCAAPCVGKISAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E      +F+ GG      ++   M  A    D+E A I RD +AAL+     N  +  
Sbjct: 193 RELARGLTRFMGGGAEKHIAQLTAEMKAAAADMDFERAAILRDDIAALTKAFERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
                D F+   +   A +Q  F   G+ RG   + ++  ++ST+AQ++   + Q Y+D 
Sbjct: 253 ATVDADLFAYAEDDLEASVQVFFVRGGRIRGQRGWIVEKVNDSTDAQLIEQLIAQVYSDI 312

Query: 297 ----------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340
                              P ++L+  E E    L     +  G  V+I+VP++G+K ++
Sbjct: 313 AASLASQKDAEKSLNSYDIPRSVLVPVEPENKEQLASWLAEVRGGPVEISVPQRGDKAEL 372

Query: 341 IEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396
           ++    NA +S T   S       +    L +  +   LP    RIE YD SH+ G + V
Sbjct: 373 MKTVAENARQSLTLHKSRRAGDLTTRSASLVELQEALELPDPLLRIECYDISHVQGTNVV 432

Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP--- 453
             MVV  +    KN YR +++  +    +DD A M  V+ RRF + +  +      P   
Sbjct: 433 ASMVVFEDGMPAKNAYRTYSITGD--AARDDTASMYDVITRRFKRHLAQQAEREAAPVHS 490

Query: 454 ------KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
                   +   F   P++V++DGG  Q++AA   L  L + + + +  IAK  +     
Sbjct: 491 GEIDASTPEPAKFAYPPNLVLVDGGPPQVAAASAALSDLGITD-VYVAGIAKRLE----- 544

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +       +VL      LY +QR+RDEAHRFAIT HR +R KA   S LDE+ G+G +
Sbjct: 545 ELWLPDDDYPVVLPRTSQALYLVQRIRDEAHRFAITFHRSKRGKAMVASALDEVPGLGEV 604

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           ++  L++ FG+V  I ++S E L ++ GI   +A KI    
Sbjct: 605 KRSALIKHFGSVAQIKQASAEELTAVPGIGPALAQKILAAL 645


>gi|123442114|ref|YP_001006097.1| excinuclease ABC subunit C [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|189038130|sp|A1JLV6|UVRC_YERE8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|122089075|emb|CAL11900.1| excinuclease ABC subunit C [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 610

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 216/618 (34%), Positives = 338/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  ++  + +   ++  I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDKAGTVIYVGKAKDLKKRLTSYFRAHVASRKTETLVKNIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++   K P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADKHPRLAIHRGAKHEKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y 
Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVPGLVSEEEYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +        + 
Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLISRMEEASRLLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
              D   +  +  LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY     
Sbjct: 250 EDLDVIGVAFDAGLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +
Sbjct: 310 VRTLPGEILLDFTLAEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    +K+  K   L     R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 370 LSQQSTIHQRMKELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL+RR+ + + +++                PDV+ +DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           LS A  V   LNV   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHHHAITGHRQRRSKVKNTSALELIEGVGPKRRQILLKYMGGLQPLLNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            +  IS+ +A KIYN   
Sbjct: 592 KVPSISQALAEKIYNALK 609


>gi|323485851|ref|ZP_08091186.1| hypothetical protein HMPREF9474_02937 [Clostridium symbiosum
           WAL-14163]
 gi|323693190|ref|ZP_08107408.1| excinuclease ABC subunit C [Clostridium symbiosum WAL-14673]
 gi|323400839|gb|EGA93202.1| hypothetical protein HMPREF9474_02937 [Clostridium symbiosum
           WAL-14163]
 gi|323502673|gb|EGB18517.1| excinuclease ABC subunit C [Clostridium symbiosum WAL-14673]
          Length = 625

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 201/626 (32%), Positives = 320/626 (51%), Gaps = 21/626 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N T +I  M+S+I    +
Sbjct: 7   ELKKLPAQPGVYIMHDAKDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEQMVSRIARFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +PR+N +L+DDK++PYI +T   + P +   R     +  
Sbjct: 67  IVTDSELEALVLECNLIKEHRPRYNTMLKDDKTYPYIKVTVSEEYPRILFSRMMKKDKNK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGPF S  AV+ TI  + + + +R+C   + +   + RPCL + I +C  PC G +S E
Sbjct: 127 YFGPFTSAGAVKDTIELIHKIYHIRTCTRKLPQDIGKDRPCLYYHIHQCDAPCQGYVSKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + V +A  FL G    + + +   M  A+ + ++E AI +R+ L ++  +       
Sbjct: 187 EYQQSVKQALDFLGGRYEPVMKYLEDRMTAASEEMEFEKAIEYRELLGSVRKVAQKQKIT 246

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  ++  +   A +Q  F   G+  G   F +   S   + QIL+ F++QFY 
Sbjct: 247 SQSIDDRDIIAMAKDDGDAVVQVFFVRDGRLIGREHFHMSISSAEEDGQILNSFVKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  P  I + EE E+  ++      + G KVKI VPK+G K +++E A  NA     +
Sbjct: 307 GTPFIPHEIWVQEELEDAEVIVSFLTARRGQKVKIVVPKKGSKEQLVELAEKNARMVLSQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E+     +    +   L  +  RIE YD S+I G  +VG M+V  +    +N
Sbjct: 367 DKEKIKREELRTIGAMNQVGEWIGLKGVK-RIEAYDISNISGFESVGSMIVYEDGRPKRN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVIL 469
            YRKF +    VK  +D A MR VL RRFS  +   E L        + SF  +PD++++
Sbjct: 426 DYRKFRIKT--VKGPNDYASMREVLTRRFSHGLTEAEQLKAEGTDAAFGSFTRFPDLIMM 483

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++ A  VLK L +E  I +  + K                  + ++        
Sbjct: 484 DGGRGQVNIALEVLKSLQIE--IPVCGMVKDDNHRTRG---LYYNNVEIPIDHHSEGFRL 538

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DEAHRFAI  HR  R K    S LD+I GIGP R++ L++ F T++ +  +  E 
Sbjct: 539 ITRVQDEAHRFAIEYHRSLRSKEQVRSVLDDIKGIGPARRKALMRHFKTIEAVRDAGIEE 598

Query: 589 LASIEGISKKIACKIYNHFHKNTSHT 614
           LA    +++  A  +Y  FH     T
Sbjct: 599 LAGAPQMNRNAAEAVYRFFHGEEMTT 624


>gi|150391815|ref|YP_001321864.1| excinuclease ABC subunit C [Alkaliphilus metalliredigens QYMF]
 gi|189038016|sp|A6TVI7|UVRC_ALKMQ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|149951677|gb|ABR50205.1| excinuclease ABC, C subunit [Alkaliphilus metalliredigens QYMF]
          Length = 622

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 182/622 (29%), Positives = 325/622 (52%), Gaps = 21/622 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             + +P+ PGVY M + A  ++YVGKA +L+ R++ Y  S NN   ++  M++ IN   +
Sbjct: 7   QLKLLPDKPGVYLMKNKANEIIYVGKAISLKNRVRQYFQSSNNQHPKVRAMVTHINFFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N+LLRDDK++PYI +T     P + K R     +  
Sbjct: 67  IVTDSELEALILECNLIKENRPKYNVLLRDDKTYPYIKVTMNETFPRVLKTRKVLKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS---VFRHRTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+ ++ A+ +T+  + + + +R C  +   +   + RPCL + I++C GPCTG ++ 
Sbjct: 127 YFGPYTNISALNETLEVIHQMYPIRVCGKNIEKMIERQERPCLNYHIRKCIGPCTGMVND 186

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN-- 235
           E Y + +HE   FL G    L +KI   M +A  K D+E A  +RD+  AL  I      
Sbjct: 187 ETYQQMIHEIILFLGGKEDELIKKIEEKMKRAAEKMDFEGAAHYRDQRQALLDIIERQKV 246

Query: 236 -DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                   D  ++   +  +C+Q  F   G+      + L T  +    +ILS F++QFY
Sbjct: 247 VSVNDIDQDIIAMAKGEQESCVQVFFVRGGKLVQREHYILTTREDEDEKEILSAFIKQFY 306

Query: 295 TD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH- 352
            +    P+ +L+  E E+  L+      + G  VK+  P +GEK+ +I+    NA  +  
Sbjct: 307 GETNFIPKEVLVEREVEDQELMAQWLTNKRGNHVKVRAPLRGEKKSMIQLVKRNAALTMG 366

Query: 353 ---TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                +  ++   +  +    +   L     R+E +D S+  G  +VG MVV        
Sbjct: 367 QREETQRKSKEKTEGAMVVLQEALGLADAIHRVEAFDISNTQGMESVGSMVVFEGGKPKN 426

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVI 468
             YR+F +    ++  +D   +  ++ RR+ + +   + +  +    QE  F  +PD+++
Sbjct: 427 KDYRRFKIKT--IQGANDYGSIEEIIYRRYKRGVDETKAMIENTMTVQEGKFSLFPDLIM 484

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGG GQ+++ +  L  L +   I +  + K  +         V +G+ + +     +L 
Sbjct: 485 VDGGLGQVTSVKKGLAALGIL--IPVCGMVKDERHRTRG---LVYEGKEIPIERPSHLLR 539

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           FI +++DE HRFAIT HR  R K+  +S L++I GIG  R++ L++ F ++  + +++ E
Sbjct: 540 FITQVQDEVHRFAITYHRSLRTKSILHSVLEDIPGIGEKRRKSLMKHFESIDKMKQATIE 599

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            L  +EG+++K+A  +Y+ F K
Sbjct: 600 ELIEVEGLNRKVAENMYHFFRK 621


>gi|77165121|ref|YP_343646.1| excinuclease ABC subunit C [Nitrosococcus oceani ATCC 19707]
 gi|254433527|ref|ZP_05047035.1| excinuclease ABC, C subunit [Nitrosococcus oceani AFC27]
 gi|90111071|sp|Q3JAN0|UVRC_NITOC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|76883435|gb|ABA58116.1| Excinuclease ABC subunit C [Nitrosococcus oceani ATCC 19707]
 gi|207089860|gb|EDZ67131.1| excinuclease ABC, C subunit [Nitrosococcus oceani AFC27]
          Length = 599

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 232/609 (38%), Positives = 354/609 (58%), Gaps = 25/609 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +  CPGVY+MLD  G+VLYVGKA NL++RIKSY  ++    +I  ++ QI +I+ TVT 
Sbjct: 12  NLTPCPGVYRMLDAKGKVLYVGKAKNLKRRIKSYFRNSKLAPKIHVLVKQICDIKITVTH 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LE+N+IK L+PR+N+LLRDDKS+PYI ++     P L  HR    + G YFGP
Sbjct: 72  TENEALILESNLIKALQPRYNVLLRDDKSYPYIFLS-ADDFPRLGFHRGVKQVSGQYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + ++ +V +T+  LQR F +R C D+ +R+R+RPCL +QIKRC+ PC G IS + Y + +
Sbjct: 131 YPNIRSVWQTLKLLQRVFPVRQCEDNFYRNRSRPCLQYQIKRCTAPCVGLISKKDYSQDI 190

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242
                FL G +  +  ++   M +A+ +  +E A  +RDR+A+L  IQ           +
Sbjct: 191 QHVVMFLKGRDQQVINELVIRMEEASGQLAFEQAAYYRDRIASLRQIQARQYISGEKKDI 250

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D   +   + +AC++  F   G N G  TF  K +   T  ++LS F+ Q+Y ++  P  
Sbjct: 251 DVLGVALTEKMACVEVFFIRGGHNLGNKTFLPKLEGNLTPEELLSTFIAQYYLNRETPPI 310

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ++LS + ++  LL     KQ G K+ +  P +G K + I+ AL NA  +  Q L+ + + 
Sbjct: 311 LILSHQPKDMGLLTEVLSKQAGRKIALIKPVRGPKVQWIKMALANAKINLNQHLAEKSNI 370

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               K   +  +L + P+RIE +D SHI G + V   VV    G  K  YR+FN+    +
Sbjct: 371 TARFKSLQQLLSLANFPQRIECFDVSHIQGTATVASCVVFDREGPRKADYRRFNI--TGI 428

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD   +R  L RRF +                     +PD++++DGGKGQ++ +  V
Sbjct: 429 IPGDDYGALRQALMRRFKK-----------------KEGVFPDLLVIDGGKGQINQSLRV 471

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFA 541
           LK++ +   IT++ IAKGP+R AG E  F+      +++    P L+ +Q +RDEAHRFA
Sbjct: 472 LKEIGIT-EITVLGIAKGPERKAGNETLFLAGYENPVMVTSDSPALHILQHIRDEAHRFA 530

Query: 542 ITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I +HRKRR K    S L+ I+G+GP R+R LL   G ++ I+R+  E LA IEGIS ++A
Sbjct: 531 IVSHRKRRAKGGKLSLLEGISGLGPKRRRKLLIQLGGLQEITRAGVEDLAQIEGISLELA 590

Query: 601 CKIYNHFHK 609
            +IY+ FH+
Sbjct: 591 QRIYDVFHR 599


>gi|254455315|ref|ZP_05068744.1| excinuclease ABC, C subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082317|gb|EDZ59743.1| excinuclease ABC, C subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 611

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 257/608 (42%), Positives = 374/608 (61%), Gaps = 18/608 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PGVY+ML+    +LYVGKA NL  R+KSY+   NH  R   M+SQ   I  T T  
Sbjct: 18  IPKSPGVYRMLNHKDDILYVGKAKNLPNRLKSYVSEKNHIIRTERMLSQTFKIEITTTAN 77

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLEAN+IK+ +P+FNILL+DDKSFP+I I +K + P + KHR     +G YFGPF
Sbjct: 78  ESEALLLEANLIKKHRPKFNILLKDDKSFPFIFIGEKEQWPRVTKHRGKKEKEGFYFGPF 137

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
           AS      TI  LQ+ F LR C +  F++R RPC+L+QIKRCSGPC G I    Y + V 
Sbjct: 138 ASAGTANWTIKMLQKIFQLRVCDEGTFKNRKRPCILYQIKRCSGPCVGYIDKSDYKKTVD 197

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           +A +F+SG + ++++ +++ M  A+ + DYE A I RDR+ +L+ IQ+     ++     
Sbjct: 198 QAIQFVSGKSRDIQKNLSKEMEAASDELDYEKASIFRDRIKSLNIIQSSQRINEANLVDA 257

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  + Y     ACIQ  F+   QN G   +F K D +   ++I+S FL QFY +K  P+ 
Sbjct: 258 DVIAAYKESGKACIQVFFYRSKQNWGNQAYFPKHDPDQNISEIMSSFLMQFYENKTVPKL 317

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ++++ E  +  L+E +  K+ G  + I   K+G K K+I  A  NA  S  +KL    ++
Sbjct: 318 VIINSEINDKKLIEETLSKKEGNTISINTAKKGTKAKVIAMAEKNAKESLNRKLYETNNN 377

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           + + +   KKF L +    +E+YDNSHI G ++VG MV  G  GFVK +YRKF++     
Sbjct: 378 KNLFEGIIKKFDLKNTINLVEVYDNSHISGTNSVGAMVTFGNEGFVKKRYRKFDIKTK-G 436

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
             QDD AM++ VL RRF + I  + N           + + PD++++DGGKGQ S+A+ V
Sbjct: 437 AEQDDFAMLKEVLSRRFKRAILEKGN-----------YLTLPDLILIDGGKGQYSSAKEV 485

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L +L + + + +I+IAKG  R+ G E FF   G++      DP L+F+QRLRDEAHRFAI
Sbjct: 486 LNELGLYD-LPMIAIAKGKMRNNGDETFFY-NGKSYKFEKNDPTLFFMQRLRDEAHRFAI 543

Query: 543 TTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T+HR +R K    S LD+I+GIG +RKR LL  FG+ + +  +S + + S+EG+ +K+A 
Sbjct: 544 TSHRAKRAKGLSKSLLDQIDGIGAIRKRSLLNHFGSARAVESASFDEIKSVEGVEEKVAK 603

Query: 602 KIYNHFHK 609
           KIYN FH+
Sbjct: 604 KIYNFFHE 611


>gi|221201360|ref|ZP_03574399.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD2M]
 gi|221208840|ref|ZP_03581838.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD2]
 gi|221171296|gb|EEE03745.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD2]
 gi|221178628|gb|EEE11036.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD2M]
          Length = 674

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/661 (32%), Positives = 331/661 (50%), Gaps = 62/661 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D AG VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDAAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-SHRFPRMAYYRGAVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS+E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISAEDYAVDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE---------------------- 279
            D  ++       C+       G++ G   +F                            
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGDDTDADAIDAPD 317

Query: 280 ------------------STNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFK 321
                             S  A++L  F+ Q Y     P  +++S       LLE+   +
Sbjct: 318 VPAEAPAGEPGSARDTTASIEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLEL-LSE 376

Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP-- 379
           Q G++V +    QG++R  +  A  NA  +  + LS + S Q   +   +   L      
Sbjct: 377 QAGHRVSLVRQPQGQRRAWLSMAEQNAQIALARLLSEQGSQQARTRALAETLGLECDDLA 436

Query: 380 -KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438
             RIE +D SH MG +     VV   +     +YR++N+    +   DD A MR VL RR
Sbjct: 437 TLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLTRR 494

Query: 439 FSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
           + ++++         +   ++    +Q  +    P++V++DGGKGQ+  A+ V  +L ++
Sbjct: 495 YEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQVFTELGLD 554

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
             + ++ +AKG  R  G+E      G   L L      L  + ++RDEAHRFAIT  R +
Sbjct: 555 TSM-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAK 613

Query: 549 RKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R KA   S L+E+ G+G  R++ LL  FG ++ +  +S E LAS++GIS  +A +IY   
Sbjct: 614 RAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVDGISHALAEQIYKQL 673

Query: 608 H 608
           H
Sbjct: 674 H 674


>gi|113868509|ref|YP_726998.1| excinuclease ABC subunit C [Ralstonia eutropha H16]
 gi|113527285|emb|CAJ93630.1| Excinuclease ABC, nuclease subunit (C) [Ralstonia eutropha H16]
          Length = 681

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 209/640 (32%), Positives = 327/640 (51%), Gaps = 42/640 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D AG VLYVGKA +L+KR+ SY +    + RI  M+++I  I  TV  
Sbjct: 48  RLPGLPGVYRYFDAAGNVLYVGKARDLKKRVSSYFNKTQLSPRIAMMVARIARIDTTVVR 107

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK L PR+NIL RDDKS+P++ +T  H+ P +  +R ++  +  YFGP
Sbjct: 108 TEAEALLLENNLIKALAPRYNILFRDDKSYPFLKLT-GHRFPRMAYYRGATDRKHQYFGP 166

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RC+GPC   IS E Y   V
Sbjct: 167 FPSAYAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTGPCVNAISEEDYARDV 226

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-----IY 239
             A +FL G    + E +   M Q   + ++E A   RD++AALS +             
Sbjct: 227 ANAARFLQGRQTEVLEGLQGKMEQHAERLEFEQAAAVRDQIAALSTVLKRQAVEEVGGQA 286

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-----STNAQIL-------- 286
             +D  ++      AC+        ++ G   +F     E         +          
Sbjct: 287 RDIDVLAVAVEGGRACVNLAMVRGSRHLGDKAYFPAHADEAAMIVEDADEREDDSAAAAA 346

Query: 287 -------------SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPK 333
                        S F+ Q Y ++P P  I++S   ++ ++LE            +    
Sbjct: 347 PPLTVDRIATRVLSAFMVQHYLEQPAPPIIVVSHAPDDATVLEALTLHAGRKVT-LVRQP 405

Query: 334 QGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSHI 390
           QG+++  +E A   A  + +++L+ + S +   +   +   L        R+E +D SH 
Sbjct: 406 QGQRKVWLEMAQQGAALALSRRLAEQGSQEARTRALAETIGLDLEDLALLRVECFDISHT 465

Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN 450
            G +     VV   +    ++YR++N+    +   DD A MR VL RR+ +L++  +  +
Sbjct: 466 AGEATQASCVVYHHHDMQNSEYRRYNIQD--IIPGDDYAAMRQVLTRRYQKLVEQIQE-D 522

Query: 451 FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF 510
              +    +    P +V++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+E  
Sbjct: 523 GGMEAGSEAAAQVPQIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLETL 581

Query: 511 FVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRK 568
               G   L L      L  + ++RDEAHRFAIT  R RR K    S L+EI GIG  R+
Sbjct: 582 VFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRARRAKTRTTSRLEEIEGIGARRR 641

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 642 QKLLTRFGGLRGVMAASIDELASVEGISRGLAEEIYRQLH 681


>gi|219849482|ref|YP_002463915.1| excinuclease ABC subunit C [Chloroflexus aggregans DSM 9485]
 gi|219543741|gb|ACL25479.1| excinuclease ABC, C subunit [Chloroflexus aggregans DSM 9485]
          Length = 653

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 202/638 (31%), Positives = 327/638 (51%), Gaps = 41/638 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64
           +P+ PGVY   D  GR+LYVGK+  L+ R++SY     + + +   ++S I +    VT 
Sbjct: 21  VPDQPGVYLWKDATGRLLYVGKSKRLRDRMRSYFGSPRSLSGKTRRLVSHIADFEIIVTQ 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E+EALLLE N+IK+ +P +NILL+DDK++PYI +T   + P ++  R        YFGP
Sbjct: 81  SELEALLLEMNLIKQHRPPYNILLKDDKTYPYIKVTVNEEWPRVFATRQVLNDGARYFGP 140

Query: 125 FASVDAVEKTINSLQRTFFLR------SCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISS 177
           +AS  +V   ++ L R F  R          +  R + +PCL +Q++RC GPC    ++ 
Sbjct: 141 YASAGSVYHALDILNRLFAFRPPYECKDDKFNRHRKQGKPCLYYQMRRCLGPCVPGLVTK 200

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E Y + +    +FL G +  +  ++   M +A  + ++E A   RDR+ A+  I      
Sbjct: 201 ETYRQAIDSVCRFLEGKSDQIVRELRAQMEEAAERLEFERAAYLRDRIQAIEKISERQQV 260

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
              +    D  +       A +Q  F   G+      F L+   + ++  +L+ FL QFY
Sbjct: 261 LRTVDTDQDVIAFAREDGSAVVQVLFIRGGKLINAEPFTLQGTEDESDEALLTSFLTQFY 320

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
              P  P ++LL+E  EE  ++     ++ G++V+ITVP++GEK++++E A  NA +   
Sbjct: 321 QHAPSIPPSLLLAEHVEEPLIIASWLQQKSGHRVEITVPRRGEKKQLVEMAAANARQKLR 380

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
               Q L +E      L +      LP +P+RIE YD S+  G  +V  MVV        
Sbjct: 381 EIREQWLHSEQRAVAALSELRDLLELPALPRRIECYDVSNTQGQQSVASMVVFEHGEPRP 440

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-------------------EENLN 450
             YR+F +    V   +D A +R V+ RRF +  +                         
Sbjct: 441 AHYRRFKIKT--VSGANDVASLREVISRRFRRAAEALGDTQQAAAAVEVEGENDSPAEPT 498

Query: 451 FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF 510
              ++    +   PD++++DGG  Q++A +  L +L    +I ++ +AKGP R+      
Sbjct: 499 DTARQALERWADLPDLLLVDGGVAQVAAVEAALHELGFT-QIPVVGVAKGPDRNRFD--L 555

Query: 511 FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKR 569
                + LVL      L  +QR+ +EAHRFAIT HRK R KA   SPLDEI GIGP RKR
Sbjct: 556 VRIGQDPLVLARDSKALALVQRIDEEAHRFAITYHRKLRNKATLRSPLDEIPGIGPKRKR 615

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LL++FG++  I R+S + LA++ G+++K A ++ +  
Sbjct: 616 ALLKAFGSIDGIRRASIDELAAVPGMTRKAAEELKSLL 653


>gi|291520852|emb|CBK79145.1| excinuclease ABC, C subunit [Coprococcus catus GD/7]
          Length = 612

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 195/619 (31%), Positives = 320/619 (51%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D+   ++YVGKA  L+ R++ Y  S+ NHT +I  M+S +    +
Sbjct: 7   ELKKLPAKPGVYIMHDVHDDIIYVGKAIILKNRVRQYFQSSRNHTPKIRQMVSHVARFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +L+DDK++PYI +T     P +   R     +  
Sbjct: 67  IITDSELEALVLECNLIKEHRPKYNTMLKDDKTYPYIKVTVGEAFPRIMLVRSMKKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  +V   I+  Q+ + +RSC  S+ +     RPCL + + +C  PC G IS E
Sbjct: 127 YFGPYTSSQSVRDIIDLSQKIYKIRSCNRSLPKETGNDRPCLYYHMGQCQAPCQGYISQE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y E VH+   FL G    + + +   M  A+ K D+E A  +RD L ++  I       
Sbjct: 187 EYHENVHQMLHFLGGNFEPVIQMLTDKMYAASEKMDFEKAASYRDLLNSVKQIDQKQKIT 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  +   +K+ A +Q  F   G+  G   F++   +  T +Q+L+ F++Q+Y 
Sbjct: 247 SSEMDDKDVIAFARDKDEAVVQVFFVRHGRLIGREHFYVSGVANDTESQVLTAFVKQYYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  ++L    ++  ++      + G+KV+  VP++G+K +++E A  NA      
Sbjct: 307 SSPFVPSTLMLQYPLDDREVILEWLSGRKGHKVREVVPQRGQKERLVELAAENARNVLTK 366

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      ++D  +   LP   +R+E +D S+I G   VG M+V       +N
Sbjct: 367 DREKIRLEEARTTGAVRDLAEMLGLPAGIRRMEAFDISNISGVETVGSMIVYENGKPKRN 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    VK QDD   M  VL RRF   ++           +E  F  +PDV+++D
Sbjct: 427 AYRKFKIRT--VKGQDDYRCMEEVLTRRFQHGLEE------TVSGEEGKFSDFPDVLMMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL +L++  +I +  + K              +   L ++    +   I
Sbjct: 479 GGKGQVNVALKVLNQLHL--KIPVCGMVKDDHHRTRG---LYYQQVELPIDTHSEMFKLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR+ R K    S LDEI GIGP R++ L++ FG+++ I  +  E L
Sbjct: 534 TRMQDEAHRFAIEYHRQLRSKTQVRSVLDEIPGIGPARRKALMKYFGSIEKIREADEEEL 593

Query: 590 ASIEGISKKIACKIYNHFH 608
              E ++   A  +Y +FH
Sbjct: 594 MKAESMNAGSARAVYAYFH 612


>gi|118463596|ref|YP_882542.1| excinuclease ABC subunit C [Mycobacterium avium 104]
 gi|118164883|gb|ABK65780.1| excinuclease ABC, C subunit [Mycobacterium avium 104]
          Length = 628

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 187/631 (29%), Positives = 302/631 (47%), Gaps = 35/631 (5%)

Query: 13  YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y+  D  GRV+YVGKA +L+ R+ SY     N   R   M++    + +TV  TEVEAL 
Sbjct: 2   YRFRDPHGRVIYVGKAKSLRSRLTSYFADVANLHPRTRQMVTTAAKVEWTVVNTEVEALQ 61

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131
           LE N IK   PRFN+  RDDKS+P + +T   + P L  +R        YFGP++   A+
Sbjct: 62  LEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLMVYRGPRRKGVRYFGPYSHAWAI 121

Query: 132 EKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++ + V +  
Sbjct: 122 RETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCSAPCIGRVSAEQHRQIVDDFC 181

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245
            FLSG       ++ + MN A  + D+E A   RD L AL         +       D  
Sbjct: 182 DFLSGKTDRFARELEQQMNAAAAELDFERAARLRDDLGALKRAMEKQAVVLGDGTDADVV 241

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLK---TDSESTNAQILSYFLRQFYTD------ 296
           +   ++  A +Q      G+ RG   + ++      +S   Q++  FL QFY +      
Sbjct: 242 AFADDELEAAVQVFHVRGGRVRGQRGWIVEKSADPGDSGEEQLVEQFLTQFYGEQAELGG 301

Query: 297 ------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
                  P P  +L+         L        G +V + VP++G+KR + E    NA  
Sbjct: 302 AADESVNPVPREVLVPCLPSNADELTSWLSGLRGSRVALRVPRRGDKRALAETVQRNAKE 361

Query: 351 SHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           +  Q               L++  +   L   P RIE  D SH+ G   VG +VV  +  
Sbjct: 362 ALQQHKLKRAGDFNARSAALQNIQEALGLSEAPLRIECVDISHVQGTDVVGSLVVFEDGL 421

Query: 407 FVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQEYSFPSWP 464
             K+ YR F +     + + DD A +  V  RRF++ +  + + N   P+ +   F   P
Sbjct: 422 PRKSDYRHFAIREAAGQGRSDDVASIAEVTRRRFARHLSEQNDPNMLSPEGKSRRFAYPP 481

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           ++ ++DGG  Q++AA  VL++L + + + +I +AK  +     E +   + + +++    
Sbjct: 482 NLYVVDGGAPQVNAASAVLEELGITD-VAVIGLAKRLE-----EVWVPSEPDPVIMPRNS 535

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             LY +QR+RDEAHRFAIT HR +R K    S LD + G+G  R++ L+  FG++  +  
Sbjct: 536 EGLYLLQRVRDEAHRFAITYHRSKRSKRMTASVLDSVPGLGEHRRKALVSHFGSIARLKE 595

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           ++ + + ++ GI    A  +      + S  
Sbjct: 596 ATVDQITAVPGIGVATATAVLEALRPDESKA 626


>gi|320011426|gb|ADW06276.1| excinuclease ABC, C subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 685

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 179/651 (27%), Positives = 312/651 (47%), Gaps = 59/651 (9%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+P+ PGVY+  D   RV+YVGKA NL++R+ +Y         R   M++   ++ +
Sbjct: 10  KPGQIPDSPGVYKFRDEHRRVIYVGKAKNLRQRLANYFQDLAGLHPRTRTMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      
Sbjct: 70  TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKKKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ + R F +R+C+  VF++     RPCLL  I +CS PC G ++ 
Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKNAERTGRPCLLGYIGKCSAPCVGRVTP 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ +   +   F++G       ++ ++M QA    +YE A   RD   AL      +  
Sbjct: 190 EEHRDLAGDFCDFMAGRTGTYIRRLEKDMTQAAEDMEYERAARLRDDAEALRRAMEKSAV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +          A ++ + L+Q Y
Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLY 309

Query: 295 ---TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
              +    P+ +L+    E+   +      + G +V + +P++G+K+ ++     NA ++
Sbjct: 310 GEESGDSVPKEVLVPALPEDPEAVSQWLADRRGSQVSLRIPQRGDKKDLMVTVQRNAQQA 369

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P R+E +D SH+ G   V  MVV  +   
Sbjct: 370 LGLHKTKRASDLTTRSRALEEIAEALGLGSAPLRVECFDISHLQGDDVVASMVVFEDGLA 429

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE-------------------- 447
            K++YR+F +     + QDD   M  V+ RRF + ++ +E                    
Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFRRYLQEKERTGEWEDSPAPTGPVPASAP 487

Query: 448 ----------------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
                           +       +   F   P +V++DGG+ Q++AA+  L +L +++ 
Sbjct: 488 SVPGTAEPGSAREEPRDEPREDDGRPKRFAYPPQLVVVDGGQPQVAAAKRALDELGIDD- 546

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
           I +  +AK  +     E +     + +VL      LY +QR+RDEAHRFAIT  R +R K
Sbjct: 547 IAVCGLAKRLE-----EVWLPDDDDPVVLPRSSEGLYLLQRIRDEAHRFAITYQRAKRAK 601

Query: 552 AAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
               SPLD++ G+G  RK+ L++ FG+VK + +++ + +  + GI ++ A 
Sbjct: 602 RIRSSPLDDVPGLGDTRKQALIKHFGSVKKLRQATIDEICEVPGIGRRTAE 652


>gi|304437121|ref|ZP_07397083.1| excision endonuclease subunit UvrC [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369880|gb|EFM23543.1| excision endonuclease subunit UvrC [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 609

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 201/620 (32%), Positives = 316/620 (50%), Gaps = 42/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M D  G+++YVGKA  L+ R++ Y  S+ NHT ++  M+S I +   
Sbjct: 8   KLKLLPDSPGVYIMKDDHGKIIYVGKAIVLKNRVRQYFQSSRNHTPKVRAMVSHIADFET 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T  EVE+L+LEAN+IK+ +PR+NI L+DDKS+PY+ +T + + P ++  R        
Sbjct: 68  IMTANEVESLILEANLIKKHRPRYNIRLKDDKSYPYVKVTVQEEFPRVFITRRVLRDGAR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ +V A+  ++  L+R F LR+C         RPCL + IKRC  PC G++ +E Y
Sbjct: 128 YFGPYTNVTALRDSLKLLRRLFPLRTCRTMP----ERPCLEYHIKRCLAPCVGKVEAEDY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              +     FL G   +++ ++ + MN A     +E+A   RD+L+A+       + +  
Sbjct: 184 RAMIRAVLLFLEGRTDDVERELEQRMNAAAEAYHFETAARLRDQLSAVRTAAERQNIVTG 243

Query: 241 RMDCFS--LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             D  +  +  +    C+Q  F   G+  G   F L+   E ++A IL  FL Q+Y    
Sbjct: 244 AGDQDAVGMARSAAGVCVQIFFIRGGKMIGREHFLLRGSEEESDADILRAFLEQYYNQAT 303

Query: 299 -CPENILLSEEAEETS---LLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN-----AH 349
             P  +LL    +  +   +      ++ G KV +  P++G K  I++ A  N     A 
Sbjct: 304 FVPREVLLPCAIDAAAQATIEAWLAARKGGGKVALLTPQRGTKHDIVQMATGNAAKFLAD 363

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
               + L  E +    +++  +   L H P+R+E +D SH  G   V  MVV  +    K
Sbjct: 364 EETRRSLLDEQT-LGAVEELGRYLGLKHPPRRMECFDISHNQGQETVASMVVFEDGAPKK 422

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           + YR F +   +    DD   MR V  RR+  L + E                 PD++I+
Sbjct: 423 SDYRLFKIRSTEG-KPDDFLSMREVTTRRYVGLPEEE----------------LPDLIII 465

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILY 528
           DGGKGQLS+A  +++       + ++ +AK        E  F     E + L  R   LY
Sbjct: 466 DGGKGQLSSALEIIRHAAGHKDVPVVGLAKQ------FELVFTEGNSEPVELPRRSQALY 519

Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            IQR+RDEAHRFAIT HRK R K+   S LD I GIGP R++ L   FG+++ I  +S E
Sbjct: 520 LIQRIRDEAHRFAITFHRKLRGKRNLVSVLDHIVGIGPKRRQSLRTHFGSLEKIKEASVE 579

Query: 588 TLASIEGISKKIACKIYNHF 607
            LA+  G+++  A  + + F
Sbjct: 580 ELAAAPGMNRTSAEAVRHFF 599


>gi|159896596|ref|YP_001542843.1| excinuclease ABC subunit C [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889635|gb|ABX02715.1| excinuclease ABC, C subunit [Herpetosiphon aurantiacus ATCC 23779]
          Length = 641

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 203/622 (32%), Positives = 326/622 (52%), Gaps = 26/622 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
            +P  PGVY   D A  ++YVGK+ +L+ R++SY  +    T +   ++  I +  F  T
Sbjct: 21  NLPLSPGVYIYRDQANTIIYVGKSKSLRDRVRSYFGAPRGLTSKTRRLVQNIADFEFITT 80

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALLLE N+IK+ +PR+N+LL+DDKS+PYI IT K   P + + R      G YFG
Sbjct: 81  DTELEALLLEMNLIKKHRPRYNVLLKDDKSYPYIKIT-KEAWPRVLRVRKVIEDGGIYFG 139

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PFA   +V  TI  L + F  R C D +F+    R R C+ + IKRC GPC    ++E+Y
Sbjct: 140 PFAKASSVYATIELLNKLFAFRLCNDDMFKKHERRNRACMYYDIKRCLGPCANNCTTEEY 199

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              +++ + FL G    +   +   MNQA     +E A   RD++ A+  +      +  
Sbjct: 200 STAINQVRLFLGGKPEAILRDLKVKMNQAAEDLQFERAAYVRDQIKAVERVMERQKVLNT 259

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-D 296
                D  +   ++  A +Q  +   G+  G+  F L+   E     ++S FL QFY   
Sbjct: 260 AASDQDVIAFARDEGKAVVQVFYIRGGKLIGSEPFTLQGTEEEHPEALMSSFLTQFYDAA 319

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSH 352
              P NILL +  EET ++E     + G+KV + VP++G+K+ +++ A  NA     +  
Sbjct: 320 ADIPPNILLPDYPEETQIIEQWLESKGGHKVSLQVPRRGDKKDLVDLAARNASQTLDQLR 379

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            Q L+ E      L    +   L  +P+RIE YD S+  G ++VG MVV  +    K  Y
Sbjct: 380 LQWLNAEQRATAGLSQLRELLNLAELPQRIECYDISNTQGTNSVGSMVVFEQGEPAKKHY 439

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------KNEENLNFHPKKQEYSFPSWP 464
           R+F +    V+  +D A +  VL+RRF++          ++ E  +  P   + ++   P
Sbjct: 440 RRFKIKT--VEGANDVASLSEVLQRRFARADDTGQTDEPESTEQTSAEPTNNDETWAVLP 497

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMR 523
           D++++DGG GQ++AA   L     E  I ++ + KG  +           +   +     
Sbjct: 498 DLILIDGGIGQVNAAAKTLAAAGFE-HIPVVGLVKGDTKGHLPYGLVKPGQRVPIAFAQN 556

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
           DP L+ +QR+ +EAHRFAI+ HRK R K    S +++I GIGP RK+ L+ +FG+++ I 
Sbjct: 557 DPGLHLVQRIDEEAHRFAISYHRKLRTKGMLRSTMEDIPGIGPKRKKALINAFGSLEGIR 616

Query: 583 RSSPETLASIEGISKKIACKIY 604
            +S E LA++ G+++K A +I 
Sbjct: 617 NASIEELAAVPGMTRKAAEEIK 638


>gi|317121061|ref|YP_004101064.1| excinuclease ABC, C subunit [Thermaerobacter marianensis DSM 12885]
 gi|315591041|gb|ADU50337.1| excinuclease ABC, C subunit [Thermaerobacter marianensis DSM 12885]
          Length = 758

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 196/659 (29%), Positives = 324/659 (49%), Gaps = 72/659 (10%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
            + ++PE PGVY   D  G+VLYVGKA +L++R++SY  S+ H   RI  M+ +  ++ F
Sbjct: 91  KAAELPEQPGVYLFKDREGQVLYVGKARSLRQRVRSYFQSSRHLPARILRMVERAADLEF 150

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  EVEAL+LE  +IKR +PR+N+ LRDDK++PY+ I    + P +   R        
Sbjct: 151 IVTRNEVEALVLENTLIKRYRPRYNVRLRDDKTYPYLKIHVHEEWPRVSIARQVQDDGAR 210

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+    ++++ +  ++R F  RSC+D   R   RPCL + I RC  PC      ++Y
Sbjct: 211 YFGPYTYSASLQEALRLIRRVFPYRSCSDHRLRRGGRPCLHYYIGRCLAPCAALCDRDQY 270

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              + +   FL G +  + E++   M  A  + ++E A   RD+L AL  +         
Sbjct: 271 DAMIRDLIAFLEGRSRAVLERVEAEMQAAAERWEFERAAELRDQLRALHQVLEQQQVDSP 330

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D   +    + A  Q  F   G+  G     +       + ++L+ FL Q+Y   
Sbjct: 331 RRGEEDAVGIARQGDRAHAQVFFVREGRIIGREHLSMTGVEGLDDGELLAAFLSQYYGRA 390

Query: 298 P-CPENILLSEEAEE--TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
              P  ILL  +       L+     ++ G +V++  P++G KR+ +E A  NA     +
Sbjct: 391 TFVPREILLPVDLPPGEAELIGRWLSQRRGIQVRLHRPQRGTKRRWVELAEHNARLLLAQ 450

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           + T +   +   +  L +  +   L   P+RIE YD S++ G   VG MVV+ +    K 
Sbjct: 451 AQTDEQVRQDRARRALDELARYLELDEPPRRIECYDISNLQGAQPVGSMVVMIDGEPAKA 510

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE----------------------- 447
           +YR+F +    V+  +D A M+ VL RR  + ++ +                        
Sbjct: 511 EYRRFRIRT--VEAPNDFASMQEVLYRRLRRGLEAQGVPVEGPVGGPGAAAGADEPAEAR 568

Query: 448 -----------------------------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                                                  + F   PD++++DGGKGQLSA
Sbjct: 569 GDAGTDAAPGHGAAGAAAAAVPSATVRATREESDGGGAPHGFADLPDLILIDGGKGQLSA 628

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           AQ VL +L + + I + ++AK  +       F   + + +V+    P L+ +QR+RDEAH
Sbjct: 629 AQEVLDRLGLVD-IPVFALAKRFEL-----VFAPDRADPIVIPRDSPALHLLQRIRDEAH 682

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           RFA+T HR+ R++A  +S L+EI GIGP R++ LL++FG+++ I+R+S + LA++ G++
Sbjct: 683 RFALTYHRQLRQRAGLHSVLEEIPGIGPRRRKALLEAFGSLEAIARASEDELAAVPGMN 741


>gi|119471718|ref|ZP_01614078.1| excinuclease ABC subunit C [Alteromonadales bacterium TW-7]
 gi|119445341|gb|EAW26629.1| excinuclease ABC subunit C [Alteromonadales bacterium TW-7]
          Length = 607

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 220/614 (35%), Positives = 333/614 (54%), Gaps = 27/614 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   +V+YVGKA  L+KR+ SY  SN    +   ++S IN+I  T+
Sbjct: 10  LKTLSSEPGVYRMLDSDNQVIYVGKAKQLKKRVSSYFRSNITDSKTRVLVSNINDIEVTL 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+ +PR+NILLRDDKS+PYIL+T+ HK P L  HR S  I+G YF
Sbjct: 70  TNTETEALLLENNLIKKYQPRYNILLRDDKSYPYILLTN-HKHPRLAFHRGSRKIKGEYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S  AV +++  +Q+ F +R C D+ +R R+RPCL +Q+KRCS PC  +++ + Y E
Sbjct: 129 GPFPSAGAVSESLRLMQKIFPVRQCEDAYYRARSRPCLQYQLKRCSAPCVNKVTEQDYSE 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V   +KFL+G +  +  ++ + M  A+ + ++E A   RD++  L  +Q       N  
Sbjct: 189 QVDYVRKFLTGKSDEVIAELIKKMEAASAELNFELAAKVRDQIMLLRKMQEQQSISGNFA 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            MD     H   L  I        +  G+ T+F K   +S+  +IL+ FL Q+Y      
Sbjct: 249 EMDVVGFAHLNGLNGIHLLMIRDHKVLGSKTYFPKVPKDSSEQEILTSFLGQYYLAPGAT 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
               + I+L  E EE+S L  +  +    KV + V  +GE+ + ++ A  NA  S   K 
Sbjct: 309 GRIAKEIILPFEIEESSALSEALTQISDRKVALKVVTRGERAQYLQLANKNALNSIAVKQ 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           ST+ S             L  I  R+E +D SH MG + V   VV    G    +YR++N
Sbjct: 369 STQDSINKRYAQLKATLRLDDIA-RMECFDISHTMGENTVASCVVFDSQGPNTKEYRRYN 427

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M   L +R+++L+  ++                PDV+ +DGGKGQL
Sbjct: 428 V--TGITGGDDYAAMEFALNKRYNKLVDEDK---------------IPDVIFIDGGKGQL 470

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRD 535
             A+      +      ++ +AKG  R  G+E   V  G   + ++   P L+ IQ +RD
Sbjct: 471 GRAEQYFSNWSHSKMPLLVGVAKGTSRKPGLETLLVDGGRKTIPMDSDAPALHLIQHIRD 530

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+HRFAI  HR +R+K    S L+EING+G  R++ LL+  G ++ +  ++ E L  + G
Sbjct: 531 ESHRFAIAGHRNKRQKQRTQSLLEEINGVGSKRRQTLLKYLGGMQGVKAANIEQLKKVPG 590

Query: 595 ISKKIACKIYNHFH 608
           IS  +A KI+NH H
Sbjct: 591 ISPDMAEKIFNHLH 604


>gi|255021819|ref|ZP_05293829.1| Excinuclease ABC subunit C [Acidithiobacillus caldus ATCC 51756]
 gi|254968643|gb|EET26195.1| Excinuclease ABC subunit C [Acidithiobacillus caldus ATCC 51756]
          Length = 624

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 217/606 (35%), Positives = 329/606 (54%), Gaps = 22/606 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVYQML   G +LYVGKA NL++R+ SY     H+ +   M++Q+  +   VT TE 
Sbjct: 30  SQPGVYQMLAADGHILYVGKARNLKRRVSSYFQKTRHSPKTLAMLAQVARVEVLVTHTET 89

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL+LEA +IK+ +P +NILLRDDKS+PY+ I      P +  HR +   +G YFGP+ +
Sbjct: 90  EALVLEAQLIKKHRPHYNILLRDDKSYPYLYIDTSSAFPRMSLHRGTQRGKGHYFGPYPA 149

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
           V A+ +++  LQ+ F LR+C DSVF +R+R CL +QI+RCSGPC G I  + Y   + +A
Sbjct: 150 VSALRESMVLLQKAFRLRTCEDSVFHNRSRACLHYQIRRCSGPCVGHIDEKSYHRDLQDA 209

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDC 244
            +FL G +      + + M  A  + D+E A   RD++AALS IQ             D 
Sbjct: 210 LRFLQGKSDEAIRTLQQRMLAAAERLDFEEAARRRDQIAALSKIQERQYVAQAGGGDFDV 269

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
            +         +   F   G+  G    F +    +  +++++ FL Q+Y D+  P N+L
Sbjct: 270 LAAVEADGQWVVFVTFIRHGRQLGGRAIFPQHPDTARGSEVMAAFLMQYYADREIPGNVL 329

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           ++      + L  +  +  G KV +  P++G +R+ +  A+ NA+ +  Q+       + 
Sbjct: 330 VNVLPRAAASLASALGQNAGRKVLLEQPQRGPRRRWLAMAVANANEALRQRAQRADGGRR 389

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            ++   + F+L  +P+R+E +D SH  G +A    VV GE+G +K +YR+FNL    +  
Sbjct: 390 RMRLLQELFSLDRLPERVECFDISHTRGEAATASCVVFGEDGALKAEYRRFNLRD--ITP 447

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A M   + RR+ +L++                 S PD+V +DGG  Q++ AQ  L 
Sbjct: 448 GDDYAAMEQAVSRRYGRLLQEG--------------LSLPDIVFIDGGPAQVARAQAALD 493

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
            L +   I +  +AKG  R  G+E        +   L+  DP L  IQ +RDEAHRFAIT
Sbjct: 494 DLGI-REILLCGVAKGTSRRPGLEWLHTTLWTQPRQLSSGDPALLVIQEIRDEAHRFAIT 552

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR RR KA   S LD I GIGP R+  LL++FG ++ I  +  E L  +EGI  ++A +
Sbjct: 553 GHRARRSKARQESELDSIGGIGPKRRVALLRAFGGLRGIRDAGVEDLQRVEGIHAELAQR 612

Query: 603 IYNHFH 608
           IY HFH
Sbjct: 613 IYAHFH 618


>gi|221214078|ref|ZP_03587051.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD1]
 gi|221166255|gb|EED98728.1| excinuclease ABC, C subunit [Burkholderia multivorans CGD1]
          Length = 674

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 216/661 (32%), Positives = 331/661 (50%), Gaps = 62/661 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D AG VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDAAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R S   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-SHRFPRMAYYRGSVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS+E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISAEDYAVDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE---------------------- 279
            D  ++       C+       G++ G   +F                            
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGDDTDADAIDAPD 317

Query: 280 ------------------STNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFK 321
                             S  A++L  F+ Q Y     P  +++S       LLE+   +
Sbjct: 318 VPAEAPAGEPGSTRDTTASIEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLEL-LSE 376

Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP-- 379
           Q G++V +    QG++R  +  A  NA  +  + LS + S Q   +   +   L      
Sbjct: 377 QAGHRVSLVRQPQGQRRAWLSMAEQNAQIALARLLSEQGSQQARTRALAETLGLECDDLA 436

Query: 380 -KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438
             RIE +D SH MG +     VV   +     +YR++N+    +   DD A MR VL RR
Sbjct: 437 TLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLTRR 494

Query: 439 FSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
           + ++++         +   ++    +Q  +    P++V++DGGKGQ+  A+ V  +L ++
Sbjct: 495 YEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQVFTELGLD 554

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
             + ++ +AKG  R  G+E      G   L L      L  + ++RDEAHRFAIT  R +
Sbjct: 555 TSM-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAK 613

Query: 549 RKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R KA   S L+E+ G+G  R++ LL  FG ++ +  +S E LAS++GIS  +A +IY   
Sbjct: 614 RAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVDGISHALAEQIYKQL 673

Query: 608 H 608
           H
Sbjct: 674 H 674


>gi|329908611|ref|ZP_08274901.1| Excinuclease ABC subunit C [Oxalobacteraceae bacterium IMCC9480]
 gi|327546671|gb|EGF31628.1| Excinuclease ABC subunit C [Oxalobacteraceae bacterium IMCC9480]
          Length = 625

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 211/619 (34%), Positives = 326/619 (52%), Gaps = 34/619 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  M+ +I  +  TVT 
Sbjct: 26  KLPHLPGVYRYFDADNNVLYVGKARDLKKRVSSYFQKTLSSSRIAMMVERIARLETTVTR 85

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+IK L+PRFNIL RDDKS+PY+ IT +   P +  +R S   +  +FGP
Sbjct: 86  SEAEALILENNLIKALQPRFNILFRDDKSYPYLKITGQ-AFPRMAYYRGSVDKRSQFFGP 144

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV++++  LQ+ F LR+C DSV+ +RTRPCLL QI RCS PC  EIS E Y   V
Sbjct: 145 FPSAWAVKESMQILQKVFLLRTCEDSVYANRTRPCLLHQIHRCSAPCVAEISQEDYNLDV 204

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A KFL G    + + +   M+    +  +E A   R++++ALS + +           
Sbjct: 205 ENAAKFLRGRQSEVMQTLEGKMHAYAGELKFEQAAGVRNQISALSRVLHQQTMETGSDAD 264

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-------DSESTNAQILSYFLRQFY 294
           +D  ++      AC+       G++ G   +F            ++ + ++L  FL Q Y
Sbjct: 265 IDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNALATAEDAIDVEVLKAFLAQHY 324

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +K  P  ++L+ E ++  L+     +Q G+++ +    Q ++R+ +E A   A  S  +
Sbjct: 325 LEKFIPSTLILNLEFDQPELMLALM-EQCGHRINLLFQPQAQRRQWLEMACKGAEISLAR 383

Query: 355 KLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
            LS + S Q   +   +  AL        R+E +D SH  G +     VV   +     +
Sbjct: 384 LLSEQGSQQSRTRALVEVLALDSADIETLRVECFDISHTQGEATQASCVVFHHHAMQNGE 443

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++N++   +   DD A MR VL RR+ ++   +                 PD+V++DG
Sbjct: 444 YRRYNIND--ITPGDDYAAMRQVLTRRYEKVANGD--------------GVMPDIVLIDG 487

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFI 530
           GKGQ+  A+ V  +L ++  + I+ +AKG  R  G+E      G     L      L  I
Sbjct: 488 GKGQVEVARQVFAELGLDISL-IVGVAKGEGRRVGLETLVFVDGREARELGKESAALMLI 546

Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            ++RDEAHRFAIT  R RR K    S L+EI GIG  R++ LL  FG+++ ++ +S E L
Sbjct: 547 AQIRDEAHRFAITGMRARRAKTRQASRLEEIEGIGAKRRQKLLARFGSLREVTNASVEEL 606

Query: 590 ASIEGISKKIACKIYNHFH 608
            S++GIS+++A  IY   H
Sbjct: 607 TSVDGISRQLAEDIYRQLH 625


>gi|311898903|dbj|BAJ31311.1| putative UvrABC system protein C [Kitasatospora setae KM-6054]
          Length = 675

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 182/646 (28%), Positives = 308/646 (47%), Gaps = 47/646 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY+  D  GRV+YVGKA +L++R+ SY     N   R   M++   ++ +TV  
Sbjct: 14  IPTSPGVYKFRDAHGRVIYVGKAKSLRQRLSSYFQDVANLHPRTATMVTTAASVEWTVVS 73

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TEVEAL LE + IK   PRFN+  RDDKS+P + +T   + P +   R +      YFGP
Sbjct: 74  TEVEALQLEYSWIKEFDPRFNVKYRDDKSYPELAVTLDEEYPRVQVTRGAHKKGVRYFGP 133

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYM 181
           +    A+ +T++ L R F +R+C++ VF+      RPCLL  I +C+ PC G +S+ ++ 
Sbjct: 134 YGHAWAIRETVDLLLRVFPVRTCSNGVFKRARQVGRPCLLGYIGKCAAPCVGRVSAAEHR 193

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E   E   F++G       ++ + M +A  + +YE A   RD L AL      N  +   
Sbjct: 194 ELAEEFCDFMAGRTGGHLRRLEQQMREAAAEMEYEKAARLRDDLGALQRAMEKNAVVLGD 253

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +L  ++  A +Q      G+ RG   +      +   A ++ + L+Q Y +  
Sbjct: 254 GTDADLLALAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEDVDTAGLVEHALQQLYGENS 313

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  +L+    +    + +      G +V + +P++G+K+ ++E    NA ++     
Sbjct: 314 EQVPREVLVPALPD--EAVHVWLSGLRGAQVDLRIPQRGDKKDLMETVQRNAQQALALHK 371

Query: 357 STEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
           +   S        L++      L  +P RIE +D SH+ G   V  MVV  +    K++Y
Sbjct: 372 TRRASDLTTRSRALQEIADALELDSVPLRIECFDISHLQGEDVVASMVVFEDGLARKSEY 431

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF--------------------- 451
           R+F +     + QDD   M  V+ RRF + ++  E                         
Sbjct: 432 RRFQIKG--FEGQDDVRSMHEVITRRFRRYLQERERTGEWAVPEQAPEGAPEGAPEGDGS 489

Query: 452 --HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                 +   F   P ++++DGG+ Q++AA   L +L +++ + +  +AK  +     E 
Sbjct: 490 PLDENGRPRRFAYPPQLLVVDGGQPQVAAAVRALAELGIDD-VAVCGLAKRLE-----EV 543

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRK 568
           +   + + +VL      LY +QR+RDEAHRFAIT  R +R K      LD + G+G  R+
Sbjct: 544 WLPGQDDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRAKRAKRLTAGELDSVPGLGETRR 603

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           R LL+ FG++K +  ++ + L  + GI ++ A  +       T   
Sbjct: 604 RALLKHFGSLKKLRAATVDELCEVPGIGRRTAETVAAALASRTPSA 649


>gi|239931949|ref|ZP_04688902.1| excinuclease ABC subunit C [Streptomyces ghanaensis ATCC 14672]
 gi|291440316|ref|ZP_06579706.1| UvrABC system protein C [Streptomyces ghanaensis ATCC 14672]
 gi|291343211|gb|EFE70167.1| UvrABC system protein C [Streptomyces ghanaensis ATCC 14672]
          Length = 695

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 185/635 (29%), Positives = 306/635 (48%), Gaps = 48/635 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+ PGVY+  D   RV+YVGKA +L++R+ +Y     N   R   M++   ++ +TV 
Sbjct: 13  EIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLANLHPRTRSMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R        YFG
Sbjct: 73  STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKKKGVKYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+  T++ L R F +R+C+  VF++     RPCLL  I +CS PC   IS+E +
Sbjct: 133 PYAHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVERISAEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                E   F++G       ++ + M QA  + +YE A   RD + AL      N  +  
Sbjct: 193 RGLAEEFCDFMAGRTGTYLRRLEKRMAQAAEEMEYERAARLRDDIEALKKAMEKNAVVLA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++  ++  A +Q      G+ RG   +      E T   ++ + L+Q Y ++
Sbjct: 253 DATDADLVAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEITTGALVEHALQQLYGEE 312

Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  +L+    +    ++    ++ G  V + +P++G+K+ ++E    NA ++   
Sbjct: 313 SGDTVPREVLVPALPDPVEPVQQWLTERRGSGVSLRIPQRGDKKALMETVQRNAQQALAL 372

Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             +   S        L++      L   P RIE YD SH+ G   V  MVV  +    K+
Sbjct: 373 HKTKRASDLTTRSRALEEIADALDLDSAPLRIECYDVSHLQGDDVVASMVVFEDGLARKS 432

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF------------------- 451
           +YR+F +       QDD   M  V+ RRF + +  +E                       
Sbjct: 433 EYRRFQIKG--FSGQDDVRSMHEVVTRRFRRYLAEKERTGEWTDGEDGDKGTAPDGLAEP 490

Query: 452 ------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505
                     +   F   P +V++DGG  Q++AA+  L +L +++ I +  +AK  +   
Sbjct: 491 PASTLTEDDGRPKRFAYPPQLVVVDGGAPQVAAARRALDELGIDD-IAVCGLAKRLE--- 546

Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIG 564
             E +     + +VL      LY +QR+RDEAHRFAIT  R +R +   S PLD++ G+G
Sbjct: 547 --EVWLPGDDDPVVLPRTSEGLYLLQRIRDEAHRFAITYQRTKRAQRFRSGPLDDVPGLG 604

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
             RK+ L++ FG+V+ +  ++ E +  + GI +K 
Sbjct: 605 ETRKQALIKHFGSVRKLRAATIEQICEVPGIGRKT 639


>gi|149928377|ref|ZP_01916617.1| Excinuclease ABC, C subunit [Limnobacter sp. MED105]
 gi|149822912|gb|EDM82158.1| Excinuclease ABC, C subunit [Limnobacter sp. MED105]
          Length = 651

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 213/650 (32%), Positives = 332/650 (51%), Gaps = 63/650 (9%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +++   PGVY+M+D  G V+YVGKA NL+KR+ SY    + + R +HM+ +I  +  T 
Sbjct: 21  LKELTTRPGVYRMIDANGTVMYVGKAKNLKKRVSSYFQKTHASPRTSHMVERIVRVDVTP 80

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK L PR+NIL RDDKS+PY+ +T+ HK P +  +R +   +  +F
Sbjct: 81  TRTEAEALLLENNLIKSLSPRYNILFRDDKSYPYLRLTN-HKYPRVAYYRGAVDKKSQFF 139

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +  AV+++I  LQR F LR+C D+VF HR+RPCL  QI+RCS PC   IS E+Y +
Sbjct: 140 GPFPNAWAVKESIQVLQRVFLLRTCEDTVFSHRSRPCLQAQIQRCSAPCVNWISPEEYAK 199

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V  A +FL G + ++   +   M +A+   ++E A ++R++L ALS +           
Sbjct: 200 DVEAASRFLRGDHKSVLANLEEKMLEASGLLEFEKAAMYRNQLGALSRVLQKQSVDTTGG 259

Query: 243 DC----FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFYTD 296
           D      ++       C+       G++ G    F      S +   ++L  FL Q Y D
Sbjct: 260 DDDADIIAVVIKGGAVCVNLAMVRGGRHLGDKPMFPSVAQASEDIGPEVLEAFLSQAYVD 319

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +P P  ++++++ +   LL     +Q G K+ +    Q E+RK ++ A+ NA  +  +++
Sbjct: 320 RPIPNLLIVNQDLDAPELLMA-LSQQAGKKINLIRQPQSERRKWLDMAVDNAEIAIARRI 378

Query: 357 STEISHQMILKDFTKKFALPHIPK------------------------------------ 380
           + + S Q   +   +   L    +                                    
Sbjct: 379 AEQGSAQFRTRALVETLGLETRLEEALQASEADGLLSGTAAGAEPVADSPAEEIDLLATL 438

Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFS 440
           R+E +D SH  G +     VV   +     +YR++N+    +   DD A MR  + RR+ 
Sbjct: 439 RVECFDISHTAGEATQASCVVFHNHDMQSREYRRYNIEG--ITPGDDYAAMRQAVTRRYQ 496

Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
           +              +  +    P VV++DGGKGQ+  A+ V ++L ++  + I+ + KG
Sbjct: 497 R--------------EGKTPIVMPHVVLIDGGKGQIEVARQVFEQLGLDIGL-IVGVKKG 541

Query: 501 PKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLD 558
             R  G+E      G   L L    P L  I ++RDEAHRFAIT  R +R KA   S LD
Sbjct: 542 ENRKVGLETLVFPDGRPSLELGPGHPALMLIAQIRDEAHRFAITGMRAKRAKARQASELD 601

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           EI GIG  RK+ LL  FG ++ +  +S E L ++EGISK +A +IY   H
Sbjct: 602 EIEGIGARRKQKLLTRFGGLRGVKAASVEDLQTVEGISKTLAEEIYRRLH 651


>gi|332976925|gb|EGK13746.1| excinuclease ABC subunit C [Psychrobacter sp. 1501(2011)]
          Length = 614

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 201/614 (32%), Positives = 309/614 (50%), Gaps = 29/614 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           ++MP  PGVY+M+   G +LYVGKA +L+ R+ SY        +   ++S+I+NI   +T
Sbjct: 22  KRMPNLPGVYKMVGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVSRIHNIETIIT 81

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYF 122
            +E EALLLE N+IK  +P +N+LLRDDKS+ Y+ I+     P L   R  +   +G +F
Sbjct: 82  RSETEALLLEQNLIKEHRPPYNVLLRDDKSYLYVFISADDPYPRLAYGRGKAKHQKGKFF 141

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S  A ++T+  +Q+ F +R C ++ FR R RPCL +QIKRC  PC G ++ E Y  
Sbjct: 142 GPFPSAHAAKETLALMQKMFQMRQCTNTFFRQRQRPCLEYQIKRCRAPCVGLVTPEDYAT 201

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            V    +FL G + ++   +   M  A    D+E A  +RD+L+ L  +Q+         
Sbjct: 202 DVQNTIRFLKGDSSDIHAALIEKMEGAADSLDFEKAAFYRDQLSMLREVQSRQAVYTVQG 261

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298
             D  S+     + C+       G+  G   +F   DS    +  LS F+  FY      
Sbjct: 262 EADVISIASQAGMTCVNVLTVRGGRVLGGKNYFPDVDSSEPISDNLSAFITSFYFQVTDD 321

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I++S E  +   L+ +    +  K  I    +  + + ++ A +NA+ +   KL  
Sbjct: 322 LPAEIIISHELPDQQALQEALSTHFDSKTVIKTNVREHRAEWLDLAKLNANNALKTKLGD 381

Query: 359 EISHQMILKDFTKK--FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
            +          +           RIE +D SH MG + +   VV  + G  K  YR++ 
Sbjct: 382 YLELHARFGALKEVLQPVTKANIDRIECFDISHTMGEATIASCVVFDQGGARKRDYRQYA 441

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +H   V+  DD A M   L RR+ +                    + PD++++DGGKGQL
Sbjct: 442 IHG--VQDGDDYAAMAQALTRRYKK-------------------HALPDILLVDGGKGQL 480

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           + A+ VL +L + N   +I +AKG  R AG+E       E L L M    L+ I  +RDE
Sbjct: 481 NMAKNVLTELGILNDTLLIGVAKGEGRKAGLEVLHFINHEPLDLPMDSKALHLIMNIRDE 540

Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT HRK+R K+ + S L+ I G+G  R+R LL  FG ++ +  +S + L  + GI
Sbjct: 541 AHRFAITAHRKKRDKRRSSSVLEAIPGLGEKRRRDLLNHFGGLQQLLGASQQELEGVNGI 600

Query: 596 SKKIACKIYNHFHK 609
            K +A  IY   H+
Sbjct: 601 GKVMANTIYKVLHE 614


>gi|108799362|ref|YP_639559.1| excinuclease ABC subunit C [Mycobacterium sp. MCS]
 gi|119868478|ref|YP_938430.1| excinuclease ABC subunit C [Mycobacterium sp. KMS]
 gi|119367675|sp|Q1B9D1|UVRC_MYCSS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038070|sp|A1UFN2|UVRC_MYCSK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|108769781|gb|ABG08503.1| Excinuclease ABC subunit C [Mycobacterium sp. MCS]
 gi|119694567|gb|ABL91640.1| Excinuclease ABC subunit C [Mycobacterium sp. KMS]
          Length = 676

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 192/644 (29%), Positives = 296/644 (45%), Gaps = 47/644 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY    +    R   M+     + +TV 
Sbjct: 13  SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFADLSGLAPRTRQMVMTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFNI  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  NTEVEALQLEYNWIKEFDPRFNIRYRDDKSYPVLAVTLNEEFPRLKVYRGPRKKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETVDLLTRVFPARTCSAGVFKRHNQIDRPCLLGYIDKCSAPCVGRVSAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FL+G    L   + R M  A    D+E A   RD + AL         ++ 
Sbjct: 193 RQIVLDFCDFLAGKTDRLVRDLERKMTAAAEDLDFERAARLRDDIGALRRALEKQTVVFG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT---DSESTNAQILSYFLRQFY 294
                D  +   +   A +Q      G+ RG   + ++      ES   Q++  FL QFY
Sbjct: 253 DGTDADVVAFADDDLEAAVQVFHVRGGRVRGQRGWIVEKSGEPGESGEGQLVEQFLTQFY 312

Query: 295 TD--------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334
            D                     P P  +L+    +    L     +  G +V + VP++
Sbjct: 313 GDQAELGSAGDNAGDSGQDEATNPVPRQVLVPCLPDNADELTEWLSQLRGSRVALRVPQR 372

Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHI 390
           G+K+ + E    NA  +  Q               L+       L   P RIE  D SH+
Sbjct: 373 GDKKALFETVQRNAKEALAQHKLKRAGDFTARTAALQSIQDTLGLADAPLRIECIDISHV 432

Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEE-N 448
            G   V  +VV  +    K+ YR + +       + DD A +  V  RRF + + + +  
Sbjct: 433 QGTDVVASLVVFEDGLPRKSDYRHYAIREAAGDGRSDDVASIAEVTRRRFYRHLHDTQHP 492

Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508
                + +   F   P++ ++DGG  Q++AAQ VL +L + + + +I +AK  +     E
Sbjct: 493 TELSAEGKSRKFAYPPNLFVVDGGAPQVNAAQAVLDELGISD-VAVIGLAKRLE-----E 546

Query: 509 KFFVKKG----EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGI 563
            +         E ++L      LY +QR+RDEAHRFAIT HR +R K    S LD + G+
Sbjct: 547 VWVPSGSDLGPEPIILPRNSEGLYLLQRVRDEAHRFAITYHRSKRSKRMTASALDSVRGL 606

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           G  R++ L+  FG+V  +  +S E + ++ GI    A  +    
Sbjct: 607 GEHRRKALVTHFGSVARLKEASVEEITAVPGIGVTTARAVLEAL 650


>gi|126435020|ref|YP_001070711.1| excinuclease ABC subunit C [Mycobacterium sp. JLS]
 gi|189038069|sp|A3PZ93|UVRC_MYCSJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|126234820|gb|ABN98220.1| Excinuclease ABC subunit C [Mycobacterium sp. JLS]
          Length = 676

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 192/644 (29%), Positives = 296/644 (45%), Gaps = 47/644 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY    +    R   M+     + +TV 
Sbjct: 13  SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFADLSGLAPRTRQMVMTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFNI  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  NTEVEALQLEYNWIKEFDPRFNIRYRDDKSYPVLAVTLNEEFPRLKVYRGPRKKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETVDLLTRVFPARTCSAGVFKRHNQIDRPCLLGYIDKCSAPCVGRVSAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FL+G    L   + R M  A    D+E A   RD + AL         ++ 
Sbjct: 193 RQIVLDFCDFLAGKTDRLVRDLERKMTAAAEDLDFERAARLRDDIGALRRALEKQTVVFG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT---DSESTNAQILSYFLRQFY 294
                D  +   +   A +Q      G+ RG   + ++      ES   Q++  FL QFY
Sbjct: 253 DGTDADVVAFADDDLEAAVQVFHVRGGRVRGQRGWIVEKSGEPGESGEGQLVEQFLTQFY 312

Query: 295 TD--------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334
            D                     P P  +L+    +    L     +  G +V + VP++
Sbjct: 313 GDQAELGSAGDNAGDSGQDEATNPVPRQVLVPCLPDNADELTEWLSQLRGSRVALRVPQR 372

Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHI 390
           G+K+ + E    NA  +  Q               L+       L   P RIE  D SH+
Sbjct: 373 GDKKALFETVQRNAKEALAQHKLKRAGDFTARTAALQSIQDTLGLADAPLRIECIDISHV 432

Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEE-N 448
            G   V  +VV  +    K+ YR + +       + DD A +  V  RRF + + + +  
Sbjct: 433 QGTDVVASLVVFEDGLPRKSDYRHYAIREAAGDGRSDDVASIAEVTRRRFYRHLHDTQHP 492

Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508
                + +   F   P++ ++DGG  Q++AAQ VL +L + + + +I +AK  +     E
Sbjct: 493 TELSAEGKSRKFAYPPNLFVVDGGAPQVNAAQAVLDELGISD-VAVIGLAKRLE-----E 546

Query: 509 KFFVKKG----EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGI 563
            +         E ++L      LY +QR+RDEAHRFAIT HR +R K    S LD + G+
Sbjct: 547 VWVPSGSDLGPEPIILPRNSEGLYLLQRVRDEAHRFAITYHRSKRSKRMTASALDSVRGL 606

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           G  R++ L+  FG+V  +  +S E + ++ GI    A  +    
Sbjct: 607 GEHRRKALVTHFGSVARLKEASVEEITAVPGIGVTTARAVLEAL 650


>gi|300723488|ref|YP_003712793.1| DNA exisiton repair enzyme together with UvrAB [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630010|emb|CBJ90645.1| DNA exisiton repair enzyme together with UvrAB [Xenorhabdus
           nematophila ATCC 19061]
          Length = 610

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 217/618 (35%), Positives = 333/618 (53%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  +   + +   ++  I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLSSYFRTQVSSRKTESLVQNIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++     P L  +R +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-GDTHPRLALYRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181
           GPF +  AV +++  LQ+ F +R C DSV+R+R+RPCL +QI RC  PC    ++ E+Y 
Sbjct: 130 GPFPNSHAVRESLALLQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLAPCVKGFVTDEEYH 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
           + V   + FL+G +  + +K+   M +A+ +  +E A  +RD++ A+  +          
Sbjct: 190 QQVEYVRLFLAGKDKQVMDKLVNKMEEASQQLKFEDAARYRDQIQAVRQVTERQFVSGEG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
           + +D  S+     +AC+   F   G+  G+ +++ +  +++   +++  FL QFY     
Sbjct: 250 DDLDVISVAFEAGIACVHVLFIRQGKILGSRSYYPRIPADTKLDEVVQTFLGQFYLQGSQ 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           ++  P  ILL     E  LLE S  +  G KV I    +G + + ++ A  NA  + T K
Sbjct: 310 NRTLPTEILLDFTLSEKELLEASLSELSGRKVHIQARPRGNRARYLKLARTNAATALTTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        L    +R+E +D SH MG   V   VV   NG V+ +YR++
Sbjct: 370 LSQQSTIHQRLASLATFAGLE-KIQRMECFDISHTMGEQTVASCVVFDSNGPVRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I   +                PD++ +DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLFRRYGKAIDQSK---------------IPDIIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNVENR---ITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQ 531
           L+ A  V   L VE       +IS+AKG  R AG+E  FF  +GE + L      L+ IQ
Sbjct: 472 LARAIEVFNSLEVEWNKYHPKLISVAKGSDRKAGLETLFFRAEGEGVALPPDSLALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HR+RR+K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHNHAITGHRQRREKVKKTSTLESIEGIGPKRRQMLLKYMGGLQPLRNASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            +  IS  +A KIYN   
Sbjct: 592 KVPSISYALAEKIYNALK 609


>gi|283458163|ref|YP_003362780.1| nuclease subunit of the excinuclease complex [Rothia mucilaginosa
           DY-18]
 gi|283134195|dbj|BAI64960.1| nuclease subunit of the excinuclease complex [Rothia mucilaginosa
           DY-18]
          Length = 646

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 201/641 (31%), Positives = 319/641 (49%), Gaps = 46/641 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  GRV+YVGKA NL+ R+ +Y  S    + +   M+    ++ +TV 
Sbjct: 13  EIPTDPGVYRFRDADGRVIYVGKAKNLRNRLNNYFASPQTLSPKTYAMVHTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+E+L LE   IK   PRFNI  RDDKS+PY+ IT     P     R        YFG
Sbjct: 73  ASEMESLQLEYTWIKEFSPRFNIAFRDDKSYPYLAITVNDVYPRAMVTRGERRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T+++L R F +R+C + VF   ++  RPCLL  I +C+ PC G+IS+E++
Sbjct: 133 PYSQAWAIRETLDALLRVFPVRTCTNGVFNRAKNSGRPCLLGYIDKCAAPCVGKISAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            +      +F+ GG      ++   M  A    D+E A I RD +AAL+     N  +  
Sbjct: 193 RKLARGLTRFMGGGAEKHIAQLTAEMKAAAADMDFERAAILRDDIAALTKAFERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
                D F+   +   A +Q  F   G+ RG   + ++  ++ST+AQ++   + Q Y+D 
Sbjct: 253 ATVDADLFAYAEDDLEASVQVFFVRGGRIRGQRGWIVEKVNDSTDAQLIEQLIAQVYSDI 312

Query: 297 ----------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340
                              P ++L+  E E    L     +  G  V+I+VP++G+K ++
Sbjct: 313 AASLASQKDAEKSLNSYDIPRSVLVPVEPENKEQLASWLAEVRGGPVEISVPQRGDKAEL 372

Query: 341 IEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396
           ++    NA +S T   S       +    L +  +   LP    RIE YD SH+ G + V
Sbjct: 373 MKTVAENARQSLTLHKSRRAGDLTTRSASLVELQEALELPDPLLRIECYDISHVQGTNVV 432

Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP--- 453
             MVV  +    KN YR +++  +    +DD A M  V+ RRF + +  +      P   
Sbjct: 433 ASMVVFEDGMPAKNAYRTYSITGD--AARDDTASMYDVITRRFKRHLAQQAEREAAPVHS 490

Query: 454 ------KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
                   +   F   P++V++DGG  Q++AA   L  L + + + +  IAK  +     
Sbjct: 491 GEIDASTPEPAKFAYPPNLVLVDGGPPQVAAASAALSDLGITD-VYVAGIAKRLE----- 544

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +       +VL      LY +QR+RDEAHRFAIT HR +R KA   S LDE+ G+G +
Sbjct: 545 ELWLPDDDYPVVLPRTSQALYLVQRIRDEAHRFAITFHRSKRGKAMVASALDEVPGLGEV 604

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           ++  L++ FG+V  I ++S E L ++ GI   +A KI    
Sbjct: 605 KRAALIKHFGSVAQIKQASAEELTAVPGIGPALAQKILAAL 645


>gi|296101739|ref|YP_003611885.1| excinuclease ABC subunit C [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056198|gb|ADF60936.1| excinuclease ABC subunit C [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 610

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 213/618 (34%), Positives = 336/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++ I NI  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIQNIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FL+G +  +  ++   M +A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLAGKDDQVLTQLIARMEKASAALEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  LAC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGLACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G +V +    +G++ + ++ A  NA  + + K
Sbjct: 310 MRTLPSEILLDFNLADKTLLADSLSELAGRRVNVQTKPRGDRARYLKLARTNAATALSTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVSQRLTALATLLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V + L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LGQAKAVFESLDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI+ HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDESHDHAISGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLLNASMEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KIY    
Sbjct: 592 KVPGISQGLAEKIYYSLK 609


>gi|266621145|ref|ZP_06114080.1| excinuclease ABC subunit C [Clostridium hathewayi DSM 13479]
 gi|288867215|gb|EFC99513.1| excinuclease ABC subunit C [Clostridium hathewayi DSM 13479]
          Length = 625

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 195/620 (31%), Positives = 328/620 (52%), Gaps = 21/620 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N T +I  M+S+I    +
Sbjct: 14  ELKKLPAQPGVYIMHDKKDEIIYVGKAISLKNRVRQYFQSSRNKTSKIEQMVSRIARFEY 73

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +PR+N +L+DDK++PYI +T     P +   RD    +  
Sbjct: 74  IITDSELEALVLECNLIKEHRPRYNTMLKDDKTYPYIKVTVYEDFPRVLFSRDMKKDKSK 133

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  +V+ TI+ + + + +R+C  ++ +   R RPCL + IK+CS PC G I+ E
Sbjct: 134 YFGPYTSAGSVKDTIDLIHKLYKIRTCNRNLPKDIGRDRPCLNYHIKQCSAPCQGYINKE 193

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + +A  FL G    +   +   M  A+ + D+E AI +RD L ++  +       
Sbjct: 194 EYGKAISQALDFLGGKYDPVISMLEEKMQAASDEMDFEKAIEYRDLLTSVRAVAQKQKIT 253

Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            + M   D  ++  ++  A +Q  F   G+  G   + +   +   + QIL+ F++QFY 
Sbjct: 254 SSSMEDRDIIAMAKDEKDAVVQVFFVREGRLIGREHYHVAIATAEDDRQILTSFVKQFYA 313

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
             P  P  + +  E E++ ++      + G KVK+ VP++GEK +++E A  NA     +
Sbjct: 314 GTPFVPRELWVQTELEDSGIIREWLSAKRGQKVKLVVPQKGEKERLVELAERNAALVLSQ 373

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E+     + + +    +     RIE +D S+I G  +VG M+V  +    +N
Sbjct: 374 DKEKIKREELRTIGAMNEVSGWLGIT-GVHRIEAFDISNISGFESVGSMIVYEDGKPKRN 432

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVIL 469
            YRKF +    VK  +D A MR VL RRFS  +     L      +E+ SF  +PD++++
Sbjct: 433 DYRKFKIKW--VKGANDYASMREVLTRRFSHGLDEAAALKEKGVDEEFGSFTKFPDLLMM 490

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++ A  VL +L +   I +  + K                  + ++ R      
Sbjct: 491 DGGRGQVNIALEVLDELKLS--IPVCGMVKDDNHRTRG---LYYNNVEIPIDKRSEGFKL 545

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DEAHRFAI  HR  R K   +S LD+I  IGP R++ L++ F  ++ I  ++ E 
Sbjct: 546 ITRIQDEAHRFAIEYHRSLRSKGQVHSILDDIPDIGPTRRKALMRYFKDIEAIKEATIEA 605

Query: 589 LASIEGISKKIACKIYNHFH 608
           L +  G++ K A  +Y+ FH
Sbjct: 606 LTAAPGMNAKSAQSVYDFFH 625


>gi|240948997|ref|ZP_04753351.1| excinuclease ABC subunit C [Actinobacillus minor NM305]
 gi|240296584|gb|EER47202.1| excinuclease ABC subunit C [Actinobacillus minor NM305]
          Length = 623

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 215/615 (34%), Positives = 333/615 (54%), Gaps = 32/615 (5%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+M D  G ++YVGKA +L+KR+ SY  S   + +   ++SQI +I  T+T +E
Sbjct: 26  PHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSTLASRKTEALVSQIAHIDTTITHSE 85

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLE N IK  +P++N+LLRDDKS+PYIL+T KH+ P L   R S  I G YFGP+ 
Sbjct: 86  TEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRLASFRGSKKIAGEYFGPYP 144

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVH 185
           +  AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y + V 
Sbjct: 145 NAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGIYSQREYDQQVE 204

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
             + FL G +  + E +   M +A    D+E+A   RD++  +  +           + +
Sbjct: 205 YVRLFLQGKDQQVIEHLISKMEKAAEDLDFEAAARFRDQIQQVRAVTEKQFVSNERLDDL 264

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKP 298
           D  S+ +   +AC+   F   G+  G+ ++F K  + +  A++   F+ QFY      + 
Sbjct: 265 DIISIAYQHGIACVHILFVRQGKVLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRT 324

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I++     E   LE    +Q G+KV IT   +GEK + +  A  NA  + T +L  
Sbjct: 325 IPHQIIIDHPVSEVEALEKVLSEQAGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQ 384

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +   Q   +      +LP I  R+E +D SH MG   V   VV  ENG +K+ YR+FN+ 
Sbjct: 385 DARIQTRYEALQAVLSLPKIA-RMECFDISHTMGEQTVASCVVFDENGPLKSDYRRFNIE 443

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   DD A M   L +R+ + +  E+                PD++ +DGGKGQL+ 
Sbjct: 444 G--ITGGDDYAAMEQALLKRYDKPLPPEK---------------IPDIIFIDGGKGQLNR 486

Query: 479 AQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLR 534
           A      L VE   ++  +I +AKG +R AG+E   + K  + + L    P L+ IQ +R
Sbjct: 487 ALETFANLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIR 546

Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + S+ 
Sbjct: 547 DESHNHAISGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKAATLEEIQSVP 606

Query: 594 GISKKIACKIYNHFH 608
           GIS  +A  I++  H
Sbjct: 607 GISASLAETIFDTLH 621


>gi|225023379|ref|ZP_03712571.1| hypothetical protein EIKCOROL_00237 [Eikenella corrodens ATCC
           23834]
 gi|224943857|gb|EEG25066.1| hypothetical protein EIKCOROL_00237 [Eikenella corrodens ATCC
           23834]
          Length = 608

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/615 (37%), Positives = 329/615 (53%), Gaps = 29/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+  D  G+VLYVGKA NL++R+ SY   N+ + RI  M+ QI +I  TVT 
Sbjct: 12  NLPNLPGVYRFSDKDGQVLYVGKAVNLKRRVGSYFQKNDLSPRIALMVRQIAHIEITVTR 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N IK L P++NIL RDDKS+PY+++T  H  P +  +R S      YFGP
Sbjct: 72  SETEALILENNFIKALSPKYNILFRDDKSYPYLMLT-GHDYPQMAYYRGSLKKTNQYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRCS PC G IS E Y   V
Sbjct: 131 YPNSYAVRDSIQILQKVFLLRTCEDSVFEHRDRPCLLYQIKRCSAPCVGHISQEDYRTSV 190

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---- 240
            EA  FL+G    L + +   M QA    D+E A  +RD++ AL  IQ+      N    
Sbjct: 191 EEAATFLNGKADRLLQSLTTKMQQAAEALDFEHAARYRDQIQALGKIQSQQFIDSNNPNA 250

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK--TDSESTNAQILSYFLRQFYTD 296
              +D  +L   +   CI       G+  G  +FF      +    A     F  Q Y  
Sbjct: 251 AYNIDILALAAEQGSICIHWVSIRNGRRVGEKSFFPDSRHSAPEEAAAYGEAFAAQHYLG 310

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P+ I+ +        L+ +  +++G +++      GE+R  ++ A  NA  +  QK 
Sbjct: 311 RDKPDIIISNFRLP--ENLQAALIEEHGKQIRFIAKTSGERRVWLQMAEQNALLALRQKQ 368

Query: 357 STEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
               + +  ++   +   LP     RIE +D SH  G + V   VV        +QYR++
Sbjct: 369 QQNQNQEQRVQALAELLQLPTAELNRIECFDISHTQGEATVASCVVYENQSMRPDQYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+     K  DD A MR VL RR+ +L +  E               WPD+V++DGGKGQ
Sbjct: 429 NIKTA--KAGDDYAAMREVLTRRYGKLAEGNEE-----------DGKWPDLVLIDGGKGQ 475

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLR 534
           ++ AQ V + L +  R+ ++ IAKGP+R AG+E+      G    L    P L+ +Q +R
Sbjct: 476 VAMAQQVWQDLGI--RLPMVGIAKGPERKAGLEELIIPHLGTTTQLPPHHPALHLLQTVR 533

Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE+HRFAIT HR++R KA   S L EI G+G  R+R LL  FG ++ I  +S + LA  E
Sbjct: 534 DESHRFAITGHRRKRGKARVTSSLAEIPGVGDKRRRSLLTRFGGLRGIQAASIDDLAQTE 593

Query: 594 GISKKIACKIYNHFH 608
           GIS+ +A KIY   H
Sbjct: 594 GISRALAEKIYEALH 608


>gi|304397146|ref|ZP_07379025.1| excinuclease ABC, C subunit [Pantoea sp. aB]
 gi|304355295|gb|EFM19663.1| excinuclease ABC, C subunit [Pantoea sp. aB]
          Length = 610

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 213/616 (34%), Positives = 339/616 (55%), Gaps = 31/616 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D +G V+YVGKA +L+KR+ SY      + +   ++S I +I  TVT 
Sbjct: 13  TVTSKPGVYRMYDASGTVIYVGKAKDLKKRLTSYFRVQVGSRKTEALVSNIQHIDVTVTH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++     P L  HR +   +G YFGP
Sbjct: 73  TETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-SDTHPRLAMHRGAKHAKGEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183
           F +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + 
Sbjct: 132 FPNGYAVRETLGLLQKVFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQ 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
               + FL+G +  +  ++ ++M +A++   +E A   RD++ A+  I          + 
Sbjct: 192 TDYVRLFLAGKDDQVLNQLVKHMEEASIGLRFEEAARLRDQIQAVRRITEKQFVSNQGDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297
           +D   + +   +AC+   F   G+  G+ ++F K   ++  A+++  F+ QFY      +
Sbjct: 252 LDVMGVAYEAGMACLHVLFIRQGKVLGSRSYFPKVPVDTDLAEVVQTFVGQFYLQGSEAR 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P +ILL     E  LL  S  +  G +V I    +G++ + ++ A  NA  + T +LS
Sbjct: 312 TLPGDILLDFTLPERELLAESLSELAGRRVNIQSKPRGDRARYLKLARTNAATALTTRLS 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              +    L    +   L  I  R+E +D SH MG   +   VV  +NG ++  YR++N+
Sbjct: 372 QHSTIHQRLNALAEFLELDKIT-RMECFDISHTMGEQTIASCVVFDQNGPLRADYRRYNI 430

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M  VL RR+ + I+ ++                PDV+++DGGKGQLS
Sbjct: 431 --TGITPGDDYAAMNQVLRRRYGKAIEEDK---------------IPDVILIDGGKGQLS 473

Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533
            A  V  +L+V   +N+  ++ +AKG  R AG+E  F + +GE + +    P L+ IQ +
Sbjct: 474 QAIQVFAELDVPWDKNQPILLGVAKGSDRKAGLETLFFEAEGEGVSMPPDAPALHVIQHI 533

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RD+AH  AI+ HRK+R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A++
Sbjct: 534 RDDAHNHAISGHRKKRAKVKNTSALESIEGVGPKRRQQLLKYMGGLQPLMNASVEEIANV 593

Query: 593 EGISKKIACKIYNHFH 608
            GIS  +A KIY    
Sbjct: 594 PGISHALAEKIYYSLK 609


>gi|71082792|ref|YP_265511.1| excinuclease ABC subunit C [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91762785|ref|ZP_01264750.1| excinuclease ABC subunit C [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|90110993|sp|Q4FPI1|UVRC_PELUB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|71061905|gb|AAZ20908.1| excinuclease ABC chain C [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718587|gb|EAS85237.1| excinuclease ABC subunit C [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 611

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 255/608 (41%), Positives = 379/608 (62%), Gaps = 18/608 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PGVY+MLD    +LYVGKA NL  R+KSY+   NH  R   M+SQ   +  T T  
Sbjct: 18  IPKSPGVYRMLDHKDVILYVGKAKNLPNRLKSYVAEKNHIIRTARMLSQTFKLEITTTAN 77

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLEAN+IK+ KP+FNILL+DDKSFP++ I++K +   + KHR     +G YFGPF
Sbjct: 78  ESEALLLEANLIKKHKPKFNILLKDDKSFPFVFISNKDQWAQVTKHRGKKDKEGFYFGPF 137

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
           AS      TI  LQ+ F +R C DS F++R RPC+L+QIKRCSGPC   I  E Y + V 
Sbjct: 138 ASAGTANWTIKMLQKIFQIRVCDDSTFKNRKRPCILYQIKRCSGPCVDYIDKEDYKKSVD 197

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           +A +F+SG + ++++ +++ M +A+ K D+E A I RDR+ +L+ IQ+     ++     
Sbjct: 198 QAIQFVSGKSRDIQKNLSKQMEEASEKLDFERASIFRDRIKSLNIIQSSQRINEANLIDA 257

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  + Y      CIQ  F+   QN G   +F K D + + ++I+S FL QFY +K  P+ 
Sbjct: 258 DVIAAYKESGKTCIQVFFYRSKQNWGNQAYFPKHDPDQSLSEIMSSFLMQFYENKNVPKL 317

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           I+++ E E+  L+E +  K+    + I V K+G K K+I  A  NA  S  +K+    ++
Sbjct: 318 IIINTEIEDKKLIEETLSKKENSAISINVAKKGTKAKVIAMAEKNAKESLNRKIYETNNN 377

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           + + +   KKF L +    +E+YDNSHI G ++VG M+  G  GFVK +YRKF++     
Sbjct: 378 KNLFEGVAKKFDLKNGLNLVEVYDNSHISGTNSVGAMITFGNEGFVKKRYRKFDIKTK-G 436

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
             QDD AM++ VL RRF + +  + N           + + PD++++DGGKGQ S+A+ V
Sbjct: 437 NEQDDFAMLKEVLTRRFKRAMLEKGN-----------YLTLPDLILIDGGKGQYSSAKEV 485

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L +  + + + +I+IAKG  R++G E FF  KG++   +  DP L+F+QRLRDEAHRFAI
Sbjct: 486 LDEFGLHD-LPMIAIAKGKLRNSGDETFFY-KGKSFKFDKNDPTLFFMQRLRDEAHRFAI 543

Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T+HR +R K    S LD+I+GIG +RKR LL  FG+ + +  +S + + S+EG+ +K+A 
Sbjct: 544 TSHRAKRAKGITKSLLDQIDGIGSIRKRALLNHFGSARAVESASFDEIKSVEGVEEKVAK 603

Query: 602 KIYNHFHK 609
           KIYN FH+
Sbjct: 604 KIYNFFHE 611


>gi|118617429|ref|YP_905761.1| excinuclease ABC subunit C [Mycobacterium ulcerans Agy99]
 gi|118569539|gb|ABL04290.1| excinuclease ABC (subunit c-nuclease) UvrC [Mycobacterium ulcerans
           Agy99]
          Length = 628

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 184/630 (29%), Positives = 295/630 (46%), Gaps = 35/630 (5%)

Query: 13  YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y+  D  GRV+YVGKA +L+ R+ SY     +   R   M++    + +TV  TEVEAL 
Sbjct: 2   YRFRDPHGRVIYVGKAKSLRSRLTSYFADIAHLQPRTRQMVTTAAKVEWTVVNTEVEALQ 61

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131
           LE N IK   PRFN+  RDDKS+P + +T     P L  +R        YFGP++   A+
Sbjct: 62  LEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEDFPRLMVYRGPRRKGVRYFGPYSHAWAI 121

Query: 132 EKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S E++ + V +  
Sbjct: 122 RETVDLLTRVFPARTCSMGVFKRHKQIDRPCLLGYIDKCSAPCIGRVSKEQHRQIVDDFC 181

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245
            FLSG       ++ + MN A    D+E A   RD  +AL         +       D  
Sbjct: 182 DFLSGKTDRYARELEQQMNAAAENLDFERAARLRDDRSALKRAMEKQAVVLGDGTDADVV 241

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST---NAQILSYFLRQFYTD------ 296
           +   ++  A +Q      G+ RG   + ++  S        Q++  FL QFY D      
Sbjct: 242 AFADDELEAAVQVFHVRGGRVRGQRGWVVEKPSAPDVSVEEQLVEQFLAQFYGDQAELGG 301

Query: 297 ------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
                  P P  +L+         L        G +V + VP++G+KR + E    NA  
Sbjct: 302 AADESVNPVPREVLVPCLPSNADQLSSWLSGLRGSRVTLRVPRRGDKRALAETVQRNAKE 361

Query: 351 SHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           +  Q               L++  +   L   P RIE  D SH+ G   V  +VV  +  
Sbjct: 362 ALQQHKLKRAGDFNARSAALQNIQEALGLADAPLRIECVDISHVQGTDVVASLVVFEDGL 421

Query: 407 FVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-FHPKKQEYSFPSWP 464
             K+ YR F +     + + DD A +  V  RRF + +  + + N   P+ +   F   P
Sbjct: 422 PRKSDYRHFAIREAAGQGRSDDVASIAEVTRRRFQRHLSEQNDPNLLSPEGKSRRFAYPP 481

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           ++ ++DGG  Q++AA  VL++L + + + +I +AK  +     E +   + + +++    
Sbjct: 482 NLYVVDGGAPQVNAASAVLEELGIVD-VAVIGLAKRLE-----EVWVPSEPDPIIMPRNS 535

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             LY +QR+RDEAHRFAIT HR +R K    S LD + G+G  R++ L+  FG++  +  
Sbjct: 536 EGLYLLQRVRDEAHRFAITYHRSKRSKRMTASALDAVPGLGEHRRKALVTHFGSIARLKE 595

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH 613
           ++ + + ++ GI    A  +      +   
Sbjct: 596 ATVDQITAVPGIGVATATAVLEALRPDQPG 625


>gi|238927176|ref|ZP_04658936.1| excision endonuclease subunit UvrC [Selenomonas flueggei ATCC
           43531]
 gi|238884958|gb|EEQ48596.1| excision endonuclease subunit UvrC [Selenomonas flueggei ATCC
           43531]
          Length = 609

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 201/619 (32%), Positives = 320/619 (51%), Gaps = 40/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M D  G+++YVGKA  L+ R++ Y  S+ NHT ++  M+S I +   
Sbjct: 8   KLKLLPDSPGVYIMKDDHGKIIYVGKAIVLKNRVRQYFQSSRNHTPKVRAMVSHIADFET 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T  EVE+L+LEAN+IK+ +PR+NI L+DDKS+PY+ +T + + P ++  R        
Sbjct: 68  IMTANEVESLILEANLIKKHRPRYNIRLKDDKSYPYVKVTVQEEFPRVFITRRVLRDGAR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ +V A+  ++  L+R F LR+C         RPCL + IKRC  PC G++  E Y
Sbjct: 128 YFGPYTNVTALRDSLKLLRRLFPLRTCRTMP----QRPCLEYHIKRCLAPCVGKVGEEDY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              +  A  FL G   +++ ++ + M+ A     +E+A   RD+L+A+       + +  
Sbjct: 184 RAMIRAALLFLEGRTDDVEGELEQRMHAAAEAYHFETAARLRDQLSAVRTAAERQNIVTG 243

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D   +  +    C+Q  F   G+  G   F L+   E TNA IL  FL Q+Y    
Sbjct: 244 AGDQDAIGMARSAAGVCVQIFFIRGGKMIGREHFLLRGSEEETNADILRAFLEQYYNQAT 303

Query: 299 -CPENILLSEEAEETS---LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  +LL ++ ++T+   +      ++ G KV +  P++G K  I++ A  NA      
Sbjct: 304 FVPREVLLPQDIDDTARATIESWLAARKGGGKVALLSPQRGTKHDIVQMATGNAEKFLSD 363

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             T++   +      +++  +   L H P+R+E +D SH  G   V  MVV  +    K+
Sbjct: 364 EETRRSLMDEQTLGAVEELGRYLGLKHPPRRMECFDISHNQGQETVASMVVFEDGAPKKS 423

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR+F +   +    DD   MR V  RR+  L + +                 PD++I+D
Sbjct: 424 DYRRFKIRSTEG-KPDDFLSMREVTTRRYVGLAEEK----------------LPDLIIID 466

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYF 529
           GGKGQLS+A  +++       + ++ +AK        E  F     + + L  R   LY 
Sbjct: 467 GGKGQLSSALEIIRHAAGHKDVPVVGLAKQ------FELVFTEGNPDPVELPRRSQALYL 520

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           IQR+RDEAHRFAIT HRK R K+   S LD I GIGP R++ L   FG+++ I  +S E 
Sbjct: 521 IQRIRDEAHRFAITFHRKLRGKRNLVSVLDHIVGIGPKRRQSLRTHFGSLEKIKEASVEE 580

Query: 589 LASIEGISKKIACKIYNHF 607
           LA+  G+++  A  + + F
Sbjct: 581 LAAAPGMNRTSAEAVRHFF 599


>gi|194365181|ref|YP_002027791.1| excinuclease ABC subunit C [Stenotrophomonas maltophilia R551-3]
 gi|229557866|sp|B4SQQ3|UVRC_STRM5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194347985|gb|ACF51108.1| excinuclease ABC, C subunit [Stenotrophomonas maltophilia R551-3]
          Length = 614

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/607 (36%), Positives = 332/607 (54%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+ R+ SY + +    RI  MISQI  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAADDTLLYVGKARALRNRVGSYFNGSPKNARIMSMISQITRMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDK++P++L+T +   P +  HR    I G YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKTYPHVLLT-REDWPRIALHRGPRAIPGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC   + + +Y E V
Sbjct: 136 YPGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVELVPAPEYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L  ++   M  A+   ++E A   RD +++L  +Q           +
Sbjct: 196 RRAALFLEGKSDELTRELGEQMQAASEALEFEQAARLRDLISSLRSMQTRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  ++    + AC+    F  G+N GT  FF +T+ E +  ++L+ F+ Q+Y +   P  
Sbjct: 256 DVLAVAMQGSQACVLLLAFRDGRNLGTRPFFPRTNGEESPEEVLAAFVSQYYIEFEPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  +  LL  +       KV++    +GE+   +E A  NA  +   +L++  + 
Sbjct: 316 ILLDREIPDADLLVAALSASAERKVQLKWNVRGERAGYVELASRNAQLTLATELNSRNAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
                       L    KR+E +D SH +G + V   VV    G V+ QYR+FN+  + +
Sbjct: 376 HARSDALRDMLGLAEPVKRVECFDISHTLGEATVASCVVFDAAGPVRAQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           +  DD A MR  ++RRF + ++ +                 PDV+++DGG GQL+ AQ  
Sbjct: 434 EPGDDYAAMRQAIDRRFRRAVEEQ--------------GVLPDVLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VE  + ++ +AKG +R AG E   +  G  L     +P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGVEG-VLLVGVAKGVERRAGHEALVMPDGRELRPGAANPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EGI+  +A 
Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIAKVEGINDALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|127512753|ref|YP_001093950.1| excinuclease ABC subunit C [Shewanella loihica PV-4]
 gi|189038092|sp|A3QDZ3|UVRC_SHELP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|126638048|gb|ABO23691.1| Excinuclease ABC subunit C [Shewanella loihica PV-4]
          Length = 609

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 200/616 (32%), Positives = 324/616 (52%), Gaps = 28/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +    GVY+M D  G V+YVGKA +L+KR+ SY   N    +   ++S I NI  T+
Sbjct: 11  LKTVSSSAGVYRMYDAQGVVIYVGKAKDLKKRLSSYFRRNLPNVKTQALVSHIANIDVTL 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E +AL+LE + IK+  PR+N+LLRDDKS+PYI ++  H+ P L  HR     +G YF
Sbjct: 71  TPSETDALILENDYIKQYMPRYNVLLRDDKSYPYIFLS-GHRHPRLAYHRGPQREKGHYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV ++++ +Q+ F +R C D  ++ R+RPCL +QI RCS PC G+IS E Y E
Sbjct: 130 GPYPNGGAVRESLHLMQKLFPIRQCDDLYYKARSRPCLQYQIARCSAPCVGKISDEDYAE 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V  A  FL G +  +   +   M QA +  +YE A  +RD+++AL  +    +   +  
Sbjct: 190 QVKLASLFLRGKDQQVIATLVGKMEQAAMDLNYEDAARYRDQISALRRVAEQQEVSSDSG 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296
            MD    Y+   +AC    F   G+  G+ +++     E+  +++L  F+ QFY +    
Sbjct: 250 DMDVIGAYYASGIACFHLLFIRNGKIFGSRSYYPSVPDETEVSEVLRAFMLQFYLNVDSQ 309

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  I++S E E+   LE +  +    ++ I    + E+   +  A  NA  +   +L
Sbjct: 310 RTLPREIVVSHEFEDIHELEEAIAQASNRRLLIKTKVRSERASFLRIADANAKNAVETRL 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +       +         R+E +D SH MG S V   VV    G  K +YR++N
Sbjct: 370 SHQNTVEERFLLLEEALEQSQAINRMECFDISHTMGESTVASCVVFNREGPSKGEYRRYN 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M+  + RRF ++  + +                PD++ +DGG GQL
Sbjct: 430 I--SGITPGDDYAAMKQAIGRRFDKIEADGK---------------IPDILFIDGGMGQL 472

Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRL 533
             AQ V+ +   +++   T+I +AKG  R  G+E     + E    L      L+ IQ +
Sbjct: 473 RIAQKVVNEKFAHLDVAPTLIGVAKGEGRKPGLETLIYGENEVAFSLPADSGALHLIQHI 532

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR +R+K    S L+ I G+GP R++ LLQ  G ++ +  +S   L+ +
Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIPGVGPKRRKALLQYLGGLQQVKGASVAQLSKV 592

Query: 593 EGISKKIACKIYNHFH 608
            GIS ++A  I++   
Sbjct: 593 PGISLEMAQTIHDALR 608


>gi|120403681|ref|YP_953510.1| excinuclease ABC subunit C [Mycobacterium vanbaalenii PYR-1]
 gi|189038072|sp|A1T8K4|UVRC_MYCVP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119956499|gb|ABM13504.1| Excinuclease ABC subunit C [Mycobacterium vanbaalenii PYR-1]
          Length = 678

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 193/661 (29%), Positives = 309/661 (46%), Gaps = 55/661 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY    +    R   M+    ++ +TV 
Sbjct: 13  SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFADLSGLAPRTRQMVMTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFNI  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  STEVEALQLEYNWIKEFDPRFNIRYRDDKSYPVLAVTLNEEYPRLKVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C++ VF+      RPCLL  I +C+ PC G +S+E++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSNGVFKRHSQIDRPCLLGYIDKCAAPCVGRVSAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V +   FL+G    L  ++ + MN A  + D+E A   RD + A+         +  
Sbjct: 193 RRIVLDFCDFLAGKTDRLIREMEQQMNAAAEELDFERAARLRDNIGAMRRAMEKQTVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT---DSESTNAQILSYFLRQFY 294
                D  +   ++  A +Q      G+ RG   + ++      EST A ++  FL QFY
Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWVIEKSGEPGESTPAYLVEQFLTQFY 312

Query: 295 TD------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
            D             P P  +L+    + T  LE    +  G +V + VP++G+KR + E
Sbjct: 313 GDQAELGGAADEATNPVPRQVLVPVLPDTTEELETWLSQLRGSRVSLRVPQRGDKRALAE 372

Query: 343 QALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398
               NA ++ TQ               L+   +   L   P RIE  D SH+ G   V  
Sbjct: 373 TVKRNAEQALTQHKLKRAGDFTARSAALQSIQEALGLADAPLRIECVDISHVQGTDVVAS 432

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLNFH----- 452
           +VV  +    K+ YR F +       + DD A +  V  RRF + +++ E          
Sbjct: 433 LVVFEDGLPRKSDYRHFAIREAAGDGRSDDVASIAEVTRRRFHRHLRDAEAAPEGRPEQG 492

Query: 453 ------------PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                          +   F   P++ ++DGG  Q++AA  VL +L + + + +I +AK 
Sbjct: 493 PRASARPEQGPRASARPARFAYPPNLFVVDGGAPQVNAAAAVLDELGISD-VAVIGLAKR 551

Query: 501 PKRSAGMEKFFVK----KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYS 555
            +     E +         + ++       LY +QR+RDEAHRFAI+ HR +R K    S
Sbjct: 552 LE-----EVWVPNLDGTAPDPVIFPRNSDGLYLLQRVRDEAHRFAISYHRSKRSKRMTAS 606

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
            LD + G+G  R++ L+  FG++  + ++S + + ++ GI    A  +      ++   P
Sbjct: 607 ALDSVRGLGEHRRKALVTHFGSLARLKQASVDEITAVPGIGAATARAVLEALGADSGAAP 666

Query: 616 T 616
           T
Sbjct: 667 T 667


>gi|94311346|ref|YP_584556.1| excinuclease ABC subunit C [Cupriavidus metallidurans CH34]
 gi|119367820|sp|Q1LKN9|UVRC_RALME RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|93355198|gb|ABF09287.1| excinuclease UvrABC, endonuclease subunit C [Cupriavidus
           metallidurans CH34]
          Length = 673

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 216/643 (33%), Positives = 332/643 (51%), Gaps = 44/643 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +MP  PGVY+  D  G +LYVGKA +L+KR+ SY +    + RI  M+++I  I  TV  
Sbjct: 36  RMPGLPGVYRYFDADGNILYVGKARDLKKRVSSYFNKTQLSPRIAMMVAKIARIDTTVVR 95

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK L PR+NIL RDDKS+P++ +T  HK P +  +R ++  +  YFGP
Sbjct: 96  TEAEALLLENNLIKALAPRYNILFRDDKSYPFLRLT-GHKFPRMAYYRGATDRKHQYFGP 154

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RC+GPC G IS + Y   V
Sbjct: 155 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTGPCVGAISEDDYARDV 214

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240
             A +FL G    + E +   M    ++ ++E A   RD++AALS +             
Sbjct: 215 SNAARFLQGRETEVLEGLQSKMEAHAVQLEFEQAAAVRDQIAALSTVLKRQAVEEVGQAR 274

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-----STNAQ----------- 284
            +D  ++      AC+       G++ G   +F     E         +           
Sbjct: 275 DIDILAVAVQGGRACVNLAMVRGGRHLGDKAYFPAHVDEAAMIVEEGDEADGSAHEGAAA 334

Query: 285 -------------ILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331
                        +LS F+ Q Y D+  P  +++S    +++L+E     Q G K+ +  
Sbjct: 335 DTDQLPIDRIAARVLSAFMVQHYLDQAPPPIVVVSHRPADSALVEA-LSMQAGRKITLVR 393

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNS 388
             QG+++  +E A   A  +  ++L+ + S +   +   +   L        RIE +D S
Sbjct: 394 QPQGQRKTWLEMAAQGAGLALARRLAEQGSQEARTRALAETIGLDLEDLATLRIECFDIS 453

Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EE 447
           H  G +     VV   +    ++YR++N+    +   DD A MR VL RR+ +L++  +E
Sbjct: 454 HTAGEATQASCVVFHHHEMQNSEYRRYNIAD--ITPGDDYAAMRQVLTRRYQKLVEQLQE 511

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
                        P  P VV++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+
Sbjct: 512 AGGDPAGDGGDGVPRMPRVVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGL 570

Query: 508 EKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGP 565
           E      G   L L      L  + ++RDEAHRFAIT  R RR KA   S L+EI G+G 
Sbjct: 571 ETLVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRARRAKARTTSRLEEIEGVGA 630

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            R++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 631 RRRQKLLTRFGGLRGVMAASIDELASVEGISRTLAEEIYRQLH 673


>gi|190573635|ref|YP_001971480.1| excinuclease ABC subunit C [Stenotrophomonas maltophilia K279a]
 gi|229557867|sp|B2FK26|UVRC_STRMK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|190011557|emb|CAQ45176.1| putative excinuclease ABC subunit C [Stenotrophomonas maltophilia
           K279a]
          Length = 614

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/607 (36%), Positives = 333/607 (54%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+ R+ SY + +    RI  MISQI  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAADDTLLYVGKARALRNRVGSYFNGSPKNARIMSMISQIVRMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDK++P++L+T +   P +  HR    I G YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKTYPHVLLT-REDWPRIALHRGPRAIPGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC   ++  +Y E V
Sbjct: 136 YPGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVELVAPAEYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L  ++   M  A+   ++E A   RD +++L  +Q           +
Sbjct: 196 RRAALFLEGKSDELTRELGEQMQAASEALEFEQAARLRDLISSLRSMQTRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  ++    + AC+    F  G+N GT  FF +T+ E +  ++L+ F+ Q+Y +   P  
Sbjct: 256 DVLAVAMQGSQACVLLLAFRDGRNLGTRPFFPRTNGEESPEEVLAAFVSQYYIEFEPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  +  LL  +       KV++    +GE+   +E A  NA  +   +L++  + 
Sbjct: 316 ILLDREIPDADLLVAALSASAERKVQLKWNVRGERAGYVELASRNAQLTLATELNSRNAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
                   +   L    KR+E +D SH +G + V   VV    G V+ QYR+FN+  + +
Sbjct: 376 HARSDALREMLGLAEPVKRVECFDISHTLGEATVASCVVFDAAGPVRAQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           +  DD A MR  ++RRF + ++ +                 PDV+++DGG GQL+ AQ  
Sbjct: 434 EPGDDYAAMRQAIDRRFRRAVEEQ--------------GVLPDVLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VE  + ++ +AKG +R AG E   +  G  L     +P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGVEG-VLLVGVAKGVERRAGHEALVMPDGRELRPGAANPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EGI+  +A 
Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIAKVEGINDALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|315126224|ref|YP_004068227.1| excinuclease ABC subunit C [Pseudoalteromonas sp. SM9913]
 gi|315014738|gb|ADT68076.1| excinuclease ABC subunit C [Pseudoalteromonas sp. SM9913]
          Length = 607

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 217/614 (35%), Positives = 332/614 (54%), Gaps = 27/614 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD   +V+YVGKA +L+KR+ SY  SN    +   ++S I NI  T+
Sbjct: 10  LKTLSSEPGVYRMLDNDNQVIYVGKAKSLKKRVSSYFRSNITDSKTRVLVSNICNIEVTL 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+ +PR+NILLRDDKS+PYIL+T+ HK P L  HR S  ++G YF
Sbjct: 70  TNTETEALLLENNLIKKYQPRYNILLRDDKSYPYILLTN-HKHPRLAFHRGSRKVKGEYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S  AV +++  +Q+ F +R C D+ +R R+RPCL +Q+KRCS PC  ++S ++Y +
Sbjct: 129 GPFPSAGAVSESLRLMQKIFPVRQCEDAYYRARSRPCLQYQLKRCSAPCVNKVSEDEYAQ 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V   +KFL+G +H +   +   M +A+ + ++E A   RD++  L  +Q       N  
Sbjct: 189 QVDYVRKFLTGKSHEVIADLIAKMEKASEQLNFELAAKVRDQIMLLRKMQEQQSISGNFA 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            MD     H   L  I        +  G+ T+F K   +S   +IL+ FL Q+Y      
Sbjct: 249 EMDVVGFAHLNGLNGIHLLMIRDHKVLGSKTYFPKVPKDSQEQEILTSFLGQYYLAPGAT 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
               + I+L  E EE+  L  +  +    KV + V  +GE+ + ++ A  NA  S T K 
Sbjct: 309 GRIAKEIILPFEIEESDALSEALTQISERKVSLKVVTRGERAQYLQLANKNALNSITVKQ 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           ST+ S             L     R+E +D SH MG + V   VV    G    +YR++N
Sbjct: 369 STQDSINKRYAQLKATLRLD-DINRMECFDISHTMGENTVASCVVFDSQGPNNKEYRRYN 427

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M   L +R+++L+  ++                PDV+ +DGGKGQL
Sbjct: 428 V--TGITGGDDYAAMEFALNKRYNKLVDEDK---------------IPDVIFIDGGKGQL 470

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRD 535
             A+   +         ++ +AKG  R  G+E   +  G   + ++   P L+ IQ +RD
Sbjct: 471 GRAEQYFENWPHAKMPLLVGVAKGTSRKPGLETLLIDGGRKTIPMDSDAPALHLIQHIRD 530

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+HRFAI  HR +R+K    S L+EI+G+G  R++ LL+  G ++ +  ++ E L  + G
Sbjct: 531 ESHRFAIAGHRNKRQKQRTQSLLEEIDGVGSKRRQTLLKYLGGMQGVKAANIEQLKKVPG 590

Query: 595 ISKKIACKIYNHFH 608
           IS  +A KI+NH H
Sbjct: 591 ISPDMAEKIFNHLH 604


>gi|256379213|ref|YP_003102873.1| excinuclease ABC, C subunit [Actinosynnema mirum DSM 43827]
 gi|255923516|gb|ACU39027.1| excinuclease ABC, C subunit [Actinosynnema mirum DSM 43827]
          Length = 649

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 191/637 (29%), Positives = 302/637 (47%), Gaps = 39/637 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
           ++  +PE PGVY+  D  GRV+YVGKA NL+ R+ SY    +    R   M++   ++ +
Sbjct: 10  AAGSIPEAPGVYKFRDPTGRVVYVGKAKNLRSRLNSYFADLSGLHPRTRQMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE N IK   PRFN+  +DDKS+P + +T   +IP L+ +R        
Sbjct: 70  TVVGTEVEALQLEYNWIKEFDPRFNVRYKDDKSYPMLAVTLNEEIPRLHVYRGPQRRGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ L R F  R+C   VF+      RPCLL  I +CS PC G +S 
Sbjct: 130 YFGPYPHAWALRETLDMLLRVFPARTCTGGVFKRHEQMGRPCLLGYIDKCSAPCVGRVSP 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           +++   V E   F +G    +  ++ R MN A  + ++E A   RD L+AL         
Sbjct: 190 DEHRAIVGEFCDFFAGRTDGMVRRLEREMNAAAEELEFERAARLRDDLSALRRAVEKQAV 249

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  +   +     +Q      G+ RG   + +  ++      ++  FL QFY
Sbjct: 250 VLGDGTDADVVAFATDDLEVSVQVFHVRGGRVRGQRAWVVDRENSEGVPALVDRFLTQFY 309

Query: 295 ------------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
                          P P  +L+ E  ++   LE       G KV + VP++G+KR ++ 
Sbjct: 310 GGQAEAAGAAAEDAAPVPREVLVPELPDDAPALERWLGGLRGTKVGLRVPQRGDKRDLMA 369

Query: 343 QALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398
               NA     Q          +    L++      LP  P RIE  D SH  G   V  
Sbjct: 370 TVERNAKEELQQHKLRRAGDLTARSAALQELQDALDLPSAPLRIECVDISHTQGTDVVAS 429

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-------EENLNF 451
           +VV  +    K++YR+F L     +   D A +  V+ RRF   +K         +    
Sbjct: 430 LVVFEDGLPRKSEYRRFALREAATEG--DVASIAEVVRRRFQAYLKETAEAGDDAKPGID 487

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
               +   F   P+++++DG   Q +AA GVL +L +EN + ++ +AK  +     E + 
Sbjct: 488 PETGKPRRFAYAPNLLVVDGAGPQATAAAGVLAELGIEN-VAVVGLAKRLE-----EVWL 541

Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570
               +  +L      LY +Q LRDEAHRFAI  HR++R K    S LD++ G+G  RK  
Sbjct: 542 PDDPDPTILPRTSTALYLLQHLRDEAHRFAIAYHRQKRSKRMTASELDDVPGLGQTRKAA 601

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           LL+ FG+++ +  +S E ++ + G+ ++ A  +    
Sbjct: 602 LLKHFGSLRKLREASIEEISGVPGVGRRTAEAVRARL 638


>gi|238917912|ref|YP_002931429.1| excinuclease ABC subunit C [Eubacterium eligens ATCC 27750]
 gi|259710340|sp|C4Z4U3|UVRC_EUBE2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|238873272|gb|ACR72982.1| excinuclease ABC subunit C [Eubacterium eligens ATCC 27750]
          Length = 612

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 200/619 (32%), Positives = 317/619 (51%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++Y+GKA  L+ R++ Y  SN N + +I  M+S I    +
Sbjct: 7   ELKKLPAKPGVYIMHDKWDNIIYIGKAKVLKNRVRQYFQSNRNKSAKIVQMVSHIQYFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +L+DDKS+P+I IT   + P +   R      G 
Sbjct: 67  IITDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKITVGEEYPRVLFARKMKHGAGK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  L + + +R+C  ++ +   R RPCL + I +C  PC G +S E
Sbjct: 127 YFGPYTSAAAVKDTIELLCKLYKVRTCNRNLPKDEGRDRPCLNYHIGQCDAPCQGYVSGE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y   + E   FL+G    + +++   M +A+ K +YE A  +RD L ++  +       
Sbjct: 187 EYRRRIDEVVAFLNGDYKKIMDRLTTQMQEASEKMEYEEAARYRDLLMSVKQVAQKQKIT 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               N  D  +   +   A +Q  F   G+  G   F +K     + + I+S F++Q+Y 
Sbjct: 247 ADDVNDRDVIACASDGQDAVVQVFFIRQGKLLGRDHFHMKVAEGDSKSDIISEFMKQYYG 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  P  I++  E E+   +      +   KV I  PK+G+K K++E A  NA     +
Sbjct: 307 GTPFIPNIIMVQYEIEDADTIAQWLSARKSRKVSIVTPKKGDKEKMVELAYKNAQLVLTQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      L     R E YD S+  G  +VG MVV  +    KN
Sbjct: 367 DAEKIKREESRTTGAMKEIAGWLGL-GTLHRAEAYDISNTNGVESVGSMVVFEDGKPKKN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    VK  DD   MR VL RRF++ ++  E L        + F  +PD++++D
Sbjct: 426 DYRKFRIRT--VKGPDDYKSMREVLTRRFTRGMREREGLE-----DSHGFSRYPDLIMMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG+GQ++ A  VLK+L +   I +  + K    S             + ++        I
Sbjct: 479 GGRGQVNIALDVLKELGL--NIPVCGMVKDDTHSTRG---LYYNNIEIPIDKHSEGFKLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAIT HR  R KA   S LD I GIGP+R++ L++ F  ++ I ++S + L
Sbjct: 534 TRVQDEAHRFAITYHRSLRDKAQVSSVLDSIEGIGPVRRKALMKHFLDIEKIRQASVDEL 593

Query: 590 ASIEGISKKIACKIYNHFH 608
              +GI++ +A  IY  FH
Sbjct: 594 MKADGITENVAENIYKFFH 612


>gi|299067039|emb|CBJ38234.1| UvrABC system protein C (Excinuclease ABC subunit C) [Ralstonia
           solanacearum CMR15]
          Length = 669

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 211/641 (32%), Positives = 321/641 (50%), Gaps = 52/641 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I +I  TV  
Sbjct: 44  RLPNLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIAHIETTVVR 103

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H  P +  +R ++  +  YFGP
Sbjct: 104 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRKHQYFGP 162

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC   IS E Y   V
Sbjct: 163 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISPEDYARDV 222

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240
             A  FL G    + + +   M +  +  ++E A   RD++ ALS +            +
Sbjct: 223 ANAAGFLLGRQDEVMQTLQDKMQRHAVALEFEQAAAVRDQIGALSTVLTRQSVEEVGQAS 282

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276
            +D  ++      AC+       G++ G   +F                           
Sbjct: 283 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADVPEGVETQP 342

Query: 277 ----DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
               D E     IL  F+ Q Y D+  P  +++S       L+E    +  G +V +   
Sbjct: 343 ELERDPERMARDILEAFVAQHYLDQFVPPVLVVSHPIRAAGLIEALAAQA-GRRVSVVRQ 401

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389
            QG +R  +E A   A  S  ++LS + S     +   +   +        R+E +D SH
Sbjct: 402 PQGARRAWLEMAEKGAELSLARRLSEQGSQHARTRALAEIIGIDLEDLAALRVECFDISH 461

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G +     VV   +     +YR++N+H   +   DD A MR VL RR+ ++++     
Sbjct: 462 TAGEATQASCVVFHSHAMQNGEYRRYNIHD--IIPGDDYAAMRQVLTRRYQKVVEQAAE- 518

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                      P  P VV++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+E 
Sbjct: 519 ---------DAPDMPRVVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 568

Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R KA   S L+EI GIG  R
Sbjct: 569 LVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKR 628

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LA++EGIS+ +A +IY   H
Sbjct: 629 RQRLLARFGGLRGVMSASVDELATVEGISQTLAEEIYRQLH 669


>gi|225377816|ref|ZP_03755037.1| hypothetical protein ROSEINA2194_03467 [Roseburia inulinivorans DSM
           16841]
 gi|225210327|gb|EEG92681.1| hypothetical protein ROSEINA2194_03467 [Roseburia inulinivorans DSM
           16841]
          Length = 623

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 199/623 (31%), Positives = 328/623 (52%), Gaps = 21/623 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
             +++P+ PGVY M D    ++Y+GKA +L+KR+  Y  +++    +   M+ QI    +
Sbjct: 7   ELKKLPDQPGVYIMHDSRDAIIYIGKAVSLRKRVHQYFQASHDEGIKKAQMVKQIARFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +LRDDK++PYI +T     P +   R     +  
Sbjct: 67  IITDSELEALVLECNLIKEHRPKYNTMLRDDKTYPYIRVTVGEDFPRVLFSRQQKKDRSR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  + + + LR+C  ++ +   + RPCL + I +C+ PC G IS E
Sbjct: 127 YFGPYTSAGAVKDTIELINKLYQLRTCNRNLPKDIGKDRPCLNYHIHQCNAPCQGYISKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + V  A +FL+G    + + +   M  A+ +  +E AI +RD L ++  I       
Sbjct: 187 EYRQRVDAAVEFLNGNYAPILKSLQEKMMAASEEMQFEKAIEYRDLLNSVKQIAQKQKIT 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           +N     D  +L  +   A +Q  F   G+  G   F++K  +E T  QIL+ F++QFY+
Sbjct: 247 HNDGEDKDIIALAADDRDAVVQVFFIRDGKLIGRDHFYVKIGNEDTKEQILTTFVKQFYS 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  P  I+L EE ++  +L     ++ G KV I +P++G K K++E A  NA     +
Sbjct: 307 GTPFIPREIMLPEEIDDHEVLAEWLGEKRGGKVYIRIPQKGMKEKLVELAQKNAELVLSQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      LP   +R+E +D S+I G   VG MVV  +    ++
Sbjct: 367 DKEKIKREEGRTIGAMKEIAGWLDLP-GLQRVEAFDISNINGFETVGSMVVYEKGKPKRS 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469
            YRKF L    V   DD A M  VL RRF+  ++ +E +       E  SF  +PD++++
Sbjct: 426 DYRKFKLRT--VTGPDDYASMHEVLTRRFTHGMREQEEMQEKELGAEYGSFTRFPDLIMM 483

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++    VL +L++   I +  + K                  + ++        
Sbjct: 484 DGGRGQVNICLKVLDELHL--NIPVCGMVKDDNHRTRG---LYYNNIEIPIDRGSEGFKL 538

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DEAHRFAI  HR  R K   +S LD+I GIGP R++ L++ + +++ I  +S E 
Sbjct: 539 ITRIQDEAHRFAIEYHRSLRSKEQVHSILDDIPGIGPSRRKALMKKYQSLEAIREASAED 598

Query: 589 LASIEGISKKIACKIYNHFHKNT 611
           LA  E +++K A  +Y   HK+ 
Sbjct: 599 LADTESMNEKAAQAVYEFLHKDA 621


>gi|239917632|ref|YP_002957190.1| Excinuclease ABC subunit C [Micrococcus luteus NCTC 2665]
 gi|281413877|ref|ZP_06245619.1| excinuclease ABC subunit C [Micrococcus luteus NCTC 2665]
 gi|239838839|gb|ACS30636.1| Excinuclease ABC subunit C [Micrococcus luteus NCTC 2665]
          Length = 643

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 194/634 (30%), Positives = 313/634 (49%), Gaps = 34/634 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63
           ++   PGVY+  D  GRV+YVGKA NL+ R+ SY         +   M+     + +TV 
Sbjct: 15  EISTSPGVYRFRDADGRVVYVGKAKNLRARLSSYFQDPARLATKTRTMVFTAAAVEWTVV 74

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EAL LE   IK  +PRFNI+ RDDKS+PY+ +T   + P +   R        YFG
Sbjct: 75  GSELEALQLEYTWIKEYRPRFNIMYRDDKSYPYLAVTMNEQFPRVQVMRGDRKPGVKYFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+ +T++ + R F +R+C+  VF+    + RPCLL  I +CS PC G IS   +
Sbjct: 135 PFHPAKAIRETVDLMLRVFPVRTCSAGVFKRARAQDRPCLLGYIGKCSAPCVGRISPADH 194

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F++G  +    ++ + M +A  +  YE A   RD +AAL  +   N  +  
Sbjct: 195 RALAQDFCDFMAGDANRFIRELEKAMARAVEELRYEDAARLRDDIAALRRVFERNAVVLP 254

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L+ ++    +Q      G+ RG   + ++   +    +++++ L+Q Y D 
Sbjct: 255 ENTEADIFALHADELEVAVQVFHVRQGRIRGQRGWVMERVEDVAEPEMVAHLLQQVYGDL 314

Query: 298 P----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                 P  IL+  E ++ + L        G +V + VP++G K  ++E    NA  +  
Sbjct: 315 EGPERIPHEILVPVEPDDAAQLTEWLSGLRGSRVAVRVPRRGSKADLMETVRENAEMALK 374

Query: 354 QKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
              S       +    L++  +   +     RIE YD SH  G + VG MVV+ +    K
Sbjct: 375 LHKSRRSGDLTTRSAALRELQEALEITEPLLRIECYDISHSQGTNVVGSMVVMEDGLPKK 434

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN-------LNFHPKKQEYSFPS 462
             YR+FN+       +DD A +R VL RRF++L K           +    ++    F  
Sbjct: 435 KDYRRFNVTGE--AARDDTASLRDVLRRRFARLAKERAEGAPLSGQVEGDDQEAGRRFSY 492

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            P +V++DGG  Q++AA  VL++L +++ + ++ +AK  +     E +       +VL  
Sbjct: 493 PPSLVVVDGGPPQVAAAAAVLEELGLDD-LPVVGLAKRLE-----EVWLPGDEFPVVLPR 546

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581
               LY +QR+RDE+HRFAI  HR RR KA   S LD I G+GP ++  LL  FG+V  I
Sbjct: 547 TSEGLYLLQRIRDESHRFAIAGHRSRRSKAMTVSALDGIPGLGPAKRTALLNHFGSVAEI 606

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
             +  + L  + GI  ++A  ++      T+ TP
Sbjct: 607 RAAGVDRLTEVAGIGPRLAEAVHTAL---TTDTP 637


>gi|308186332|ref|YP_003930463.1| UvrABC system protein C [Pantoea vagans C9-1]
 gi|308056842|gb|ADO09014.1| UvrABC system protein C [Pantoea vagans C9-1]
          Length = 610

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 214/616 (34%), Positives = 338/616 (54%), Gaps = 31/616 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D +G V+YVGKA +L+KR+ SY  +   + +   ++S I +I  TVT 
Sbjct: 13  TVTSKPGVYRMYDASGTVIYVGKAKDLKKRLTSYFRTQVGSRKTEALVSNIQHIDVTVTH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++     P L  HR +   +G YFGP
Sbjct: 73  TETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-SDTHPRLAMHRGAKHAKGEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183
           F +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + 
Sbjct: 132 FPNGYAVRETLGLLQKVFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQ 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
               + FL+G +  +  ++ + M +A++   +E A   RD++ A+  I          + 
Sbjct: 192 TDYVRLFLAGKDDQVLNQLVKRMEEASIGLRFEEAARLRDQIQAVRRITEKQFVSNQGDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297
           +D   + +   +AC+   F   G+  G+ ++F K   ++  A+++  F+ QFY      +
Sbjct: 252 LDVMGVAYEAGMACLHVLFIRQGKVLGSRSYFPKVPVDTDLAEVVQTFVGQFYLQGSEAR 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P +ILL     E  LL  S     G +V I    +G++ + ++ A  NA  + T +LS
Sbjct: 312 TLPGDILLDFTLPERELLAESLSALAGRRVNIQSKPRGDRARYLKLARTNAATALTTRLS 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              +    L    +   L  I  R+E +D SH MG   +   VV  +NG ++  YR++N+
Sbjct: 372 QHSTIHQRLMALAEFLELDRIT-RMECFDISHTMGEQTIASCVVFDQNGPLRADYRRYNI 430

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M  VL RR+ + I+ ++                PDV+++DGGKGQLS
Sbjct: 431 IG--ITPGDDYAAMNQVLRRRYGKAIEEDK---------------IPDVILIDGGKGQLS 473

Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533
            A+ V  +L+V   + R  ++ +AKG  R AG+E  F + +GE + L    P L+ IQ +
Sbjct: 474 QAKQVFAELDVPWDKKRPILLGVAKGSDRKAGLETLFFEAEGEGVSLPPDAPALHVIQHI 533

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RD+AH  AI+ HRK+R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A++
Sbjct: 534 RDDAHNHAISGHRKKRAKVKNTSALESIEGVGPKRRQQLLKYMGGLQPLMNASVEEIANV 593

Query: 593 EGISKKIACKIYNHFH 608
            GIS  +A KIY    
Sbjct: 594 PGISHALAEKIYYSLK 609


>gi|294140639|ref|YP_003556617.1| excinuclease ABC subunit C [Shewanella violacea DSS12]
 gi|293327108|dbj|BAJ01839.1| excinuclease ABC, C subunit [Shewanella violacea DSS12]
          Length = 609

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 204/616 (33%), Positives = 324/616 (52%), Gaps = 28/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY   N    +   ++S IN+I  TV
Sbjct: 11  LKSVSSSPGVYRMYDADDVVIYVGKAKDLKKRLTSYFRKNLVHIKTKALVSHINSIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E +ALLLE + IK+  PR+N+LLRDDKS+PYIL+++ HK P L  HR     +G+YF
Sbjct: 71  THSETDALLLENDYIKQYMPRYNVLLRDDKSYPYILLSN-HKHPRLAYHRGPKRDKGTYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV ++++ +Q+ F +R C D  ++ R+RPCL +QI RCS PC  +++SE+Y  
Sbjct: 130 GPYPNGGAVRESLHLMQKIFPIRQCDDLYYKSRSRPCLQYQIGRCSAPCVDKVTSEEYEA 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240
            V  A  FL G N  +  ++   M       +YE A  +RD++ AL  +    +      
Sbjct: 190 QVKLASLFLKGKNQQVMIELVSKMETCAQSLEYEKAASYRDQITALRRVAEQQEVLSSTG 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296
            MD    Y+   +AC    F   G+  G+ +++    +++   +I S F+ QFY +    
Sbjct: 250 DMDVIGAYYASGVACFHLLFIRNGKIFGSRSYYPSVPAQTDMDEIFSSFMIQFYLNGDSQ 309

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P+ ILLS   ++   LE +       KV+I    + E+   +  A+ NA  +   +L
Sbjct: 310 RTLPKEILLSHSFDDLPQLEEAIQAALDKKVEIKTSVRSERANFLRLAVTNATNAVNTRL 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +       +   +    +R+E +D SH MG S V   VV    G  K  YR++N
Sbjct: 370 SHKNTVEQRFLLLEEALEMTTRIQRMECFDISHTMGESTVASCVVFNREGPNKADYRRYN 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  N +   DD A M+  + RRF ++ K                   PD++ +DGG GQL
Sbjct: 430 I--NGITPGDDYAAMKQAITRRFDKIDK---------------TGKIPDILFIDGGLGQL 472

Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533
             AQ ++ +   N++    +I IAKG  R  G+E     + E +  +      L+ IQ +
Sbjct: 473 RIAQKIVDEKFANIDTAPLLIGIAKGEGRKPGLETLIYGENELSFSIAADSGALHLIQHI 532

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR +R+K    S L+ I G+GP R++ LLQ  G ++ +  +S   LA +
Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQFLGGIQEVKGASVVELAKV 592

Query: 593 EGISKKIACKIYNHFH 608
            GIS  +A  I++   
Sbjct: 593 PGISLDMAQTIHDSLR 608


>gi|239978851|ref|ZP_04701375.1| excinuclease ABC subunit C [Streptomyces albus J1074]
 gi|291450734|ref|ZP_06590124.1| UvrABC system protein C [Streptomyces albus J1074]
 gi|291353683|gb|EFE80585.1| UvrABC system protein C [Streptomyces albus J1074]
          Length = 845

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 189/637 (29%), Positives = 311/637 (48%), Gaps = 46/637 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+P+ PGVY+  D   RV+YVGKA +L++R+ SY         R   M++  +++ +
Sbjct: 10  KPGQIPDSPGVYRFRDDHRRVIYVGKAKSLRQRLSSYFQDLAGLHPRTRTMVTTASSVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE   IK   PRFN+  RDDKS+PY+ +T   + P +   R        
Sbjct: 70  TVVSTEVEALQLEYTWIKEFDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGQKKKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+  T++ L R F +R+C+  VF++     RPCLL  I +C+ PC G IS 
Sbjct: 130 YFGPYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCAAPCVGRISP 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E + +   E   F++G       ++ R M +A  + +YE A   RD + AL      +  
Sbjct: 190 EDHRDLAEEFCDFMAGRTGAYLRRLERQMQEAAEEMEYERAGRLRDDIEALRRAMEKSAV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +          A ++ + L+Q Y
Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVGHALQQLY 309

Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    E T  +      + G +V + +P++G+K+ ++E    NA +S
Sbjct: 310 GEERGEGVPKEVLVPALPENTEAVSQWLGDRRGTQVSLRIPQRGDKKSLMETVQRNAQQS 369

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P RIE YD SH  G   V  MVV  +   
Sbjct: 370 LVLHKTKRASDLTTRSRALEEIAEALELDSAPLRIECYDISHFQGDDVVASMVVFEDGLA 429

Query: 408 VKNQYRKFNLHPN-------DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE--- 457
            K++YR+F +            + QDD   M  V+ RRF + + + E      ++Q+   
Sbjct: 430 RKSEYRRFQIKGRAGDTQLWHGQGQDDVRSMHEVITRRFRRYLSDRERTGEWTEEQDATE 489

Query: 458 ---------------YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502
                            F   P +V++DGG+ Q++AAQ  L +L +++ I +  +AK  +
Sbjct: 490 GGEVTASLTDEDGRPKRFAYPPQLVVVDGGQPQVAAAQRALDELGIDD-IAVCGLAKRLE 548

Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEIN 561
                E +   + + +VL      LY +QR+RDEAHRFAIT  R +R K    SPLD++ 
Sbjct: 549 -----EVWVPGQDDPVVLPRTSEGLYLLQRIRDEAHRFAITYQRAKRSKRIRTSPLDDVP 603

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           G+G  RK+ L++ FG+V+ +  ++ E +  + GI +K
Sbjct: 604 GLGETRKQALVKHFGSVRKLRAATVEQICEVPGIGRK 640


>gi|304559285|gb|ADM41949.1| Excinuclease ABC subunit C [Edwardsiella tarda FL6-60]
          Length = 610

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 212/619 (34%), Positives = 331/619 (53%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY      + +   ++ QI  I  TV
Sbjct: 11  LKTVTNQPGVYRMYDAGAEVIYVGKAKDLKKRLASYFRRQLASRKTEALVRQIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++   + P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLS-AERHPRLAVHRGAKRARGDYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF + +AV +T+  LQ+ F +R C DSV+R+R+RPCL +QI+RC GPC    +S E+Y 
Sbjct: 130 GPFPNANAVRETLALLQKLFPIRQCEDSVYRNRSRPCLQYQIQRCLGPCVAGLVSDEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
             V   + FLSG +  + + +   M +A+    +E A   RD++ A+  +         +
Sbjct: 190 RQVEYVRLFLSGKDSQVIDALVARMEEASRALRFEEAARLRDQIQAVRRVTERQFISGDH 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +     +ACI   F   GQ  G+ ++F +  + +T A++L  F+ QFY     
Sbjct: 250 DDIDVIGVAFEAGMACIHVLFIRQGQVLGSRSYFPRVPAGTTLAEVLQTFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  IL+     +  LL  S  +  G ++ I    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILIDFALPDRQLLADSISELAGRRIHIQSQPRGDRARYLKLARTNASTALNSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L    +        +R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTILQRLAQLEQVLR-RADIQRMECFDISHTMGEETVASCVVFDRNGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A MR VL RR+ + +  E+                PDV+ +DGGKGQ
Sbjct: 429 NISD--ITPGDDYAAMRQVLRRRYGKALNEEK---------------IPDVIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L V    +   ++ IAKG  R AG+E  F + +GE   L      L+ IQ
Sbjct: 472 LAQAKQVFAELEVPWDTHHPLLLGIAKGSDRKAGLETLFFEAQGEGFSLAPDSAALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I GIGP R++ LL+  G ++ +  +S + +A
Sbjct: 532 HIRDESHNHAIAGHRKKRAKVRSTSALESIEGIGPKRRQQLLKYMGGMQPLRDASVDEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A KI+    +
Sbjct: 592 KVPGISVALAEKIHYALKQ 610


>gi|300716155|ref|YP_003740958.1| UvrABC system protein C [Erwinia billingiae Eb661]
 gi|299061991|emb|CAX59107.1| UvrABC system protein C [Erwinia billingiae Eb661]
          Length = 610

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 215/618 (34%), Positives = 335/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY   N  + +   ++  I  I  TV
Sbjct: 11  LKSVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLTSYFRGNLASRKTEALVEAIRQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-ADAHPRLASHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVTGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + +   + FLSG +  +  ++   M  A++   +E A   RD++ A+  +        N 
Sbjct: 190 QQIEYVRLFLSGKDDQVLNQLVARMESASISLKFEEAARLRDQIQAVRRVTERQFVSNNG 249

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
              D   +  +  +AC+   F   G+  G+ ++F K  + +  A+++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDNGMACLHVLFIRQGKVLGSRSYFPKVPNGTELAEVVQTFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +ILL     E  LL  S     G KV I    +G++ + ++ A  NA  +   K
Sbjct: 310 ARTLPTDILLDFTLPEKDLLSDSLTGLAGRKVSIQSKPRGDRARYLKLARTNASTALVSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    LK   +   LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTIHQRLKALAEILDLPEIT-RMECFDISHTMGEQTVASCVVFDRNGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + ++  +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKDLEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V  +L+V   ++R  ++ IAKG  R AG+E  F   +GE   L    P L+ +Q
Sbjct: 472 LGQAKNVFAELDVAWDKDRPILLGIAKGTDRKAGLETLFFEPEGEGFNLPPDSPALHVLQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR +R K    S L+ I+GIGP R+++LL+  G ++ +  +S + +A
Sbjct: 532 HIRDDSHNHAITGHRNKRAKVKNTSALETIDGIGPKRRQMLLKYMGGLQPLMNASVDEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KI+    
Sbjct: 592 KVPGISQLLAEKIFYSLK 609


>gi|319943510|ref|ZP_08017792.1| excinuclease ABC subunit C [Lautropia mirabilis ATCC 51599]
 gi|319743325|gb|EFV95730.1| excinuclease ABC subunit C [Lautropia mirabilis ATCC 51599]
          Length = 769

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 217/648 (33%), Positives = 325/648 (50%), Gaps = 47/648 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D +G VLYVGKA +L KR++SY      + RI  M++++  I  T   
Sbjct: 127 TLPALPGVYRMKDASGTVLYVGKARDLSKRVRSYFRKTLASPRIAQMVARVVEIDTTTVG 186

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK LKPRFNIL RDDK++P++  +  H  P +  +R  +  +  YFGP
Sbjct: 187 SEAEALLLENNLIKSLKPRFNILFRDDKTYPFLKFS-AHAFPQISYYRGGTDRRAQYFGP 245

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  AV + I  LQ+ F LR+C DS F +R+RPCLL QI+RCS PC G I    Y   V
Sbjct: 246 YPSSFAVREGIQVLQKIFHLRTCEDSYFANRSRPCLLHQIRRCSAPCVGLIDEAAYRRDV 305

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
           + A  FL GG+  + +++   M  A  +  +E A + RDR++ALS + +      N    
Sbjct: 306 NSAITFLKGGHKEILKEMEAGMQAAAEELRFEEAAVLRDRISALSRVLHQQSMEINADTD 365

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ----ILSYFLRQFYTDK 297
            D  ++       C+       G++ G    F    +   + +    +L  FL Q Y   
Sbjct: 366 ADIIAIEQADGQVCLNLAMVRGGRHLGDKAHFPSHVAGLEDEEGLGSVLDAFLTQHYAGA 425

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  I+ + + ++  LL I   +       +  P+Q ++R+ + QA  NA  + T+ L+
Sbjct: 426 TIPGVIICARKPQDPELLGILRAQAGHAVAWVQNPQQ-DRRRWLAQAHANAKIALTRHLA 484

Query: 358 TEISHQMILKDFTKKFAL---PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            + S     +D      L        R+E +D SH MG +     VV   N     QYR+
Sbjct: 485 IDGSQLRRTQDLLDVLGLSLEDPARLRVECFDISHTMGEATQASCVVYENNRMASGQYRR 544

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK------------------- 455
           FN+    ++  DD A MR VL+RR+ +     +                           
Sbjct: 545 FNIQG--IEPGDDYAAMRQVLQRRYGRWATTRDEPAGDADAGHTSVSDADASTDTDETAA 602

Query: 456 -----------QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504
                              PD+V++DGGKGQ+S+A+ V + L ++  + ++ +AKG  R 
Sbjct: 603 PGEGRTASGRVARDDAARLPDIVLVDGGKGQISSAREVFESLGLDIGL-LVGVAKGEGRK 661

Query: 505 AGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEING 562
            G+E      G E LVL    P L  + ++RDEAHRFAIT  R RR K    S L+EI+G
Sbjct: 662 VGLETLVFADGREPLVLGKESPALMLVAQIRDEAHRFAITGMRARRAKTRKVSRLEEIDG 721

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G  R++ LL  FG ++ I  +S E LAS+EGIS  +A  IY   H++
Sbjct: 722 VGARRRQRLLSRFGGLRGIMAASVEDLASVEGISMSLAESIYQQLHQS 769


>gi|300691964|ref|YP_003752959.1| UvrABC system protein C (excinuclease ABC subunit C) [Ralstonia
           solanacearum PSI07]
 gi|299079024|emb|CBJ51686.1| UvrABC system protein C (Excinuclease ABC subunit C) [Ralstonia
           solanacearum PSI07]
          Length = 669

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 211/641 (32%), Positives = 322/641 (50%), Gaps = 52/641 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I +I  TV  
Sbjct: 44  RLPNLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIAHIETTVVR 103

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H  P +  +R ++  +  YFGP
Sbjct: 104 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRKHQYFGP 162

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC   IS E Y   V
Sbjct: 163 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISQEDYARDV 222

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240
             A  FL G    + + +   M +  +  ++E A   RD++ ALS +            +
Sbjct: 223 ANAAGFLLGRQDEVMQTLQDKMQRHAVALEFEQAAAVRDQIGALSTVLKRQSVEEVGQAS 282

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276
            +D  ++      AC+       G++ G   +F                           
Sbjct: 283 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADVPEGAETQP 342

Query: 277 ----DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
               D+E     IL  F+ Q Y D+  P  +++S   +   L+E    +  G +V +   
Sbjct: 343 EPARDAERMARDILEAFVAQHYLDQFVPPVLVVSHPIQAAGLIEALAVQA-GRRVSVVRQ 401

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389
            QG +R  +E A   A  S  ++LS + S Q   +   +   +        R+E +D SH
Sbjct: 402 PQGARRAWLEMAEKGAELSLARRLSEQGSQQARTRALAETIGIDLEDLAALRVECFDISH 461

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G +     VV   +     +YR++N+    +   DD A MR VL RR+ ++++     
Sbjct: 462 TAGEATQASCVVFHSHAMQNGEYRRYNIQG--ITPGDDYAAMRQVLTRRYQKVVEQAAE- 518

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                      P  P VV++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+E 
Sbjct: 519 ---------DAPDMPHVVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 568

Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                    L L      L  + ++RDEAHRFAIT  R +R KA   S L+EI GIG  R
Sbjct: 569 LVFADSRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKR 628

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S E LA++EGIS+ +A +IY   H
Sbjct: 629 RQRLLARFGGLRGVMAASVEELATVEGISQTLAEEIYRQLH 669


>gi|254448056|ref|ZP_05061520.1| excinuclease ABC, C subunit [gamma proteobacterium HTCC5015]
 gi|198262482|gb|EDY86763.1| excinuclease ABC, C subunit [gamma proteobacterium HTCC5015]
          Length = 604

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 198/609 (32%), Positives = 326/609 (53%), Gaps = 23/609 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M +    +LYVGKA +L++R+ SY  ++    +   +++QI +I  T+T TE 
Sbjct: 14  TRPGVYRMYNAEDELLYVGKAKSLKRRLSSYFRNSALAVKTQALVAQIEHIEVTITQTEA 73

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFGPFA 126
           EAL+LE+++IKR KPR+NILL+DDKS+P I I+ +   P +  +R         YFGP+ 
Sbjct: 74  EALILESHLIKRHKPRYNILLKDDKSYPLIRIS-QDAFPRISYYRGRRDRKDAEYFGPYP 132

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  AV+ T++ LQ+ F +R C DS +++R+RPCL +QIKRC+ PC G +S E Y   +  
Sbjct: 133 SSGAVKHTLDLLQKLFRIRQCEDSYYKNRSRPCLQYQIKRCTAPCVGYVSEEDYARDLEN 192

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDC 244
            ++FLSG +  + + +   M+ A+   ++E A ++RD++  +  + +      N    D 
Sbjct: 193 TRRFLSGKSVEVIDDLVARMDSASQNLEFEKAALYRDQIRDVQQVVDTQGVQSNSGNADA 252

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
            +L     + C+       G + G  ++F K         +L  F+ Q Y     P+ I+
Sbjct: 253 VALCSEGGVYCVSIHSVRGGHSLGAKSYFPKIPKGEQGESVLMAFMAQHYLSHDAPQEIV 312

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
            S +A E  LL  +      ++VKI    + +K   +  A  NA  +   KL++      
Sbjct: 313 ASLDAAEAELLSEALTLHSDHRVKIIRRPRSDKAAWLRLAQTNAQHALAAKLASREGMGR 372

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            L    +   +   P+R+E +D SH  G   V   VV    G  K+ YR+FN+  + ++ 
Sbjct: 373 RLAALQQLIGIDQPPQRMECFDISHTGGERTVASCVVFDAQGARKDLYRRFNI--DGIEP 430

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A M   L+RR+S++ +                  +PD++ +DGGKGQ++ A+ VL 
Sbjct: 431 GDDYAAMHQALKRRYSKVQRE--------------SGRFPDLLFIDGGKGQVAEAKAVLD 476

Query: 485 KLNVENRITIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           +L +   I I+ ++KGP+R AG E      +     ++  +  L+ IQ++RDEAHRFAIT
Sbjct: 477 ELGITEMI-IVGVSKGPERRAGEEQIVLPHQERLFRVDAANAGLHLIQQIRDEAHRFAIT 535

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR RR KA   S L+ I G+G  R++ L++ FG ++ I R+  + +A + GIS+  A  
Sbjct: 536 GHRARRGKARKTSVLEGIPGVGAKRRQQLIKHFGGIQGIMRAGVDDIARVPGISRSTAEA 595

Query: 603 IYNHFHKNT 611
           +Y   + N 
Sbjct: 596 VYEAINPNA 604


>gi|257455127|ref|ZP_05620365.1| excinuclease ABC subunit C [Enhydrobacter aerosaccus SK60]
 gi|257447460|gb|EEV22465.1| excinuclease ABC subunit C [Enhydrobacter aerosaccus SK60]
          Length = 629

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 204/614 (33%), Positives = 319/614 (51%), Gaps = 30/614 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+ML   G ++YVGKA +L+ R+ SY        +   ++ +I+NI   +T
Sbjct: 36  KRLPNLPGVYKMLGKNGDIIYVGKAKSLKSRVNSYFAKTIDHPKTRALVQRIDNIETIIT 95

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSYF 122
            +E EALLLE N+IK  +P +N+LLRDDKS+ Y+ I+     P L   R      +G +F
Sbjct: 96  RSETEALLLEQNLIKLHRPPYNVLLRDDKSYLYVFISADKPYPRLAYGRGKGQHQKGRFF 155

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S  A ++T+  +Q+ F +R C ++ F  R RPCL +QIKRC  PC G +S E+Y +
Sbjct: 156 GPFPSAHAAKQTLLMMQKMFMVRQCTNTFFAQRQRPCLEYQIKRCKAPCVGLVSPEEYAD 215

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            V+   +FL G   +L+ K+   M QA    ++E A ++RD+L+ L  +Q          
Sbjct: 216 DVNNTIRFLKGEGTDLQVKLVGKMEQAAEDMNFEQAALYRDQLSMLREVQAKQAVYTVKG 275

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298
             D  ++     + C+       GQ  G   +F   DSE+  A  LS F+  FY      
Sbjct: 276 EADIIAIASQAGITCVHVMNVRNGQVLGGNNYFPDVDSENDIADNLSEFVSSFYFQVSDD 335

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            PE +++S E  + + +  +  + +G KV I    + ++ + +  A +NA+ +   KL  
Sbjct: 336 LPEELIISHELPDQNAMTEALTETFGKKVTIKTKIREQRNEWLTLAQMNANNALQTKLGD 395

Query: 359 E---ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                S    L +  K+        RIE +D SH MG + +   VV  + G  K  YR++
Sbjct: 396 YLEVKSRFNALNEVLKEALQGKSLDRIECFDISHTMGEATIASCVVADQGGLRKRDYRQY 455

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +H   +   DD A M+ VL RR+S+                      PD++++DGGKGQ
Sbjct: 456 AIHG--ITGGDDYAAMKQVLNRRYSK-------------------QPLPDLLLIDGGKGQ 494

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           L+ A+ VL +L +  +  ++ +AKG  R AG+E       E L L      L+ I  +RD
Sbjct: 495 LNMAKDVLSELGILTQTLLVGVAKGEGRKAGLEVLHFIDREPLDLPADSKALHLIMHIRD 554

Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT HRK+R K+ + S L+ I G+G  R+R LL  FG ++ +  +S + +  + G
Sbjct: 555 EAHRFAITAHRKKRDKRRSSSVLEAIPGLGEKRRRELLNHFGGLQQLLGASQDEIGQVNG 614

Query: 595 ISKKIACKIYNHFH 608
           I K +A  IY   H
Sbjct: 615 IGKVMANTIYKVLH 628


>gi|254384196|ref|ZP_04999540.1| UvrABC system protein C [Streptomyces sp. Mg1]
 gi|194343085|gb|EDX24051.1| UvrABC system protein C [Streptomyces sp. Mg1]
          Length = 682

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 185/623 (29%), Positives = 316/623 (50%), Gaps = 34/623 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+P+ PGVY+  D   RV+YVGKA +L++R+ +Y     +   R   M++   ++ +
Sbjct: 23  KPGQIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDVASLHPRTATMVTTAASVEW 82

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+P + +T   + P +   R        
Sbjct: 83  TVVSTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPSLAVTMNEQYPRVQVMRGPKKKGVR 142

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ + R F +R+C+  VF+      RPCLL  I +CS PC G ++ 
Sbjct: 143 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKRSAQIGRPCLLGYIGKCSAPCVGRVTP 202

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E   +   F++G       ++ + M++A  + +YE A   RD + AL      N  
Sbjct: 203 EEHRELAEDFCDFMAGRTGTYLSRLEQRMHEAAEEMEYEKAARLRDDIGALRRAMEKNAV 262

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +          A ++ + L+Q Y
Sbjct: 263 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLY 322

Query: 295 TD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            +   +  P+ +L+    E+T  L     ++ G +V + VP++G+K+ ++E    NA +S
Sbjct: 323 GEEKGEAVPKEVLVPALPEDTPALSQWLAERRGAQVSLRVPQRGDKKSLMETVHRNAQQS 382

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P RIE +D SH+ G   V  MVV  +   
Sbjct: 383 LALHKTKRASDLTTRSRALEEIAEALELDSAPLRIECFDISHLQGDDVVASMVVFEDGLA 442

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE-----------ENLNFHPKKQ 456
            K++YR+F +     + QDD   M  V+ RRF + ++ +           E+       +
Sbjct: 443 RKSEYRRFQIKS--FEGQDDVRSMHEVVSRRFRRYLQEKLKTGEWSPEEGEDPLAEDDGR 500

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
              F   P +V++DGG+ Q++AA+  L++L V++ + +  +AK  +     E +   + +
Sbjct: 501 PKRFAYPPQLVVVDGGQPQVAAAKRALEELGVDD-VAVCGLAKRLE-----EVWLPGEDD 554

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSF 575
            +VL      LY +QR+RDEAHRFAI   R +R K   S PLDE+ G+G  RK+ LL+ F
Sbjct: 555 PVVLPRTSEGLYLLQRVRDEAHRFAIQYQRSKRGKRLKSGPLDEVPGLGESRKQALLKHF 614

Query: 576 GTVKMISRSSPETLASIEGISKK 598
           G+VK + +++ + +  + GI +K
Sbjct: 615 GSVKKLRQATIDQICEVPGIGRK 637


>gi|284990547|ref|YP_003409101.1| excinuclease ABC subunit C [Geodermatophilus obscurus DSM 43160]
 gi|284063792|gb|ADB74730.1| excinuclease ABC, C subunit [Geodermatophilus obscurus DSM 43160]
          Length = 690

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 188/630 (29%), Positives = 316/630 (50%), Gaps = 38/630 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA NL++R+ SY         R   M++   ++ +TV 
Sbjct: 13  SIPESPGVYKFRDPNGRVVYVGKAKNLRQRLNSYFADVAGLHPRTRQMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P + +T   + P L   R        YFG
Sbjct: 73  GTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPSLAVTLNEEYPRLQVMRGPKKKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T+++L R F  R+C++ VF+      RPCLL  I +C+ PC G +S+E++
Sbjct: 133 PYAHAWAIRETLDTLTRVFPARTCSNGVFKRAGQIGRPCLLGYIGKCAAPCVGRVSAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V    +F++G    +  ++ R M +A    +YE A   RD L AL         +  
Sbjct: 193 RQIVDGFCEFMAGRTDQMIRRLEREMAEAAEAMEYEKAARLRDDLGALRRAMEKQAVVLG 252

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  +   ++  A +Q      G+ RG   + +    E +  +++  F+ Q Y   
Sbjct: 253 NGTDADVVAFAQDELEASVQVFHVRGGRVRGQRGWIVDKVEEVSTGELVEQFVLQVYGGV 312

Query: 295 --------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
                     +  P  +L+ E  ++  + E    +  G +V + VP++G+KR ++E    
Sbjct: 313 DEATGVGEAGEAVPREVLVPELPDDADVYEELLSELRGSRVSLRVPQRGDKRALLETVER 372

Query: 347 NAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402
           NA  +  +      S      + L +  +   LP  P RIE  D SH+   + V  MVV 
Sbjct: 373 NAKEAFARHRVKRSSDLTARSLALSELQEALELPDAPLRIECIDVSHVQQTNVVASMVVF 432

Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH-----PKKQE 457
            +    K+ YR+F++        DD A M  V+ RRF++ +K E++          + + 
Sbjct: 433 EDGLAKKSDYRRFSV----THGTDDTAAMAEVVRRRFARHLKEEQDRRDEQGVAAEEGRP 488

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
             F   P+++++DGG  Q++AA   L +L + + + +  +AK  +     E +   + + 
Sbjct: 489 RRFAYPPNLLVVDGGAPQVAAAARSLDELGIVD-VAVCGLAKRME-----EVWLPGESDP 542

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFG 576
           ++L      LY +QR+RDEAHRFAIT HR++R  +   S LD++ G+G  R++ L++ FG
Sbjct: 543 VILPRTSEALYLLQRVRDEAHRFAITYHRQKRSTSMLVSLLDDVPGLGETRRKALMKQFG 602

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNH 606
           ++K +  ++ E L  + GI ++ A  +   
Sbjct: 603 SLKRLRAATVEELMVVPGIGRRTAEAVLAA 632


>gi|239626642|ref|ZP_04669673.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516788|gb|EEQ56654.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 646

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 189/626 (30%), Positives = 314/626 (50%), Gaps = 22/626 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M +    ++Y+GKA +L+ R++ Y  S+ N T +I  M+S I    +
Sbjct: 7   ELKKLPASPGVYLMHNNRDEIIYIGKAISLKNRVRQYFQSSRNKTAKIEQMVSHIAWFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-G 119
            +T +E+EAL+LE N+IK  +PR+N +L+DDKS+PYI  T   + P L   RD       
Sbjct: 67  ILTDSELEALVLECNLIKEHRPRYNTMLKDDKSYPYIKATMGEEFPRLLFARDMKKDGRS 126

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISS 177
            YFGP+ S  AV+ T++ + + + +R+C+ S+ +   R RPCL + IK+C  PC G I++
Sbjct: 127 KYFGPYTSAGAVKDTLDLIHKLYRIRTCSRSLPKDIGRDRPCLNYHIKQCDAPCQGYITA 186

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           ++Y     +A  FL+G    L + +   M  A+   D+E AI +R+ L ++  +      
Sbjct: 187 QEYQANFSQALDFLNGRYDPLLKTLQEKMENASENLDFERAIEYRELLNSVKQVAQKQKI 246

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             + M   D  ++  ++  A +Q  F   G+  G   F +         +IL  F++QFY
Sbjct: 247 TSSSMEDRDIVAMARDEKDAVVQVFFIREGKLIGRDHFHVSAAMAENEGEILDSFVKQFY 306

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349
              P  P  + L     +  ++      + G KV+I VPK+GEK +++E A  NA     
Sbjct: 307 AGTPFIPRELWLQHPLADEEVISQWLSAKRGQKVRIVVPKKGEKERLVELAARNAALVLS 366

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +   +    E+     +     +       +R+E +D S+  G  +VG MVV  +    +
Sbjct: 367 QDKERIKKEELRTIGAMNQ-IGELIGIGGIRRMEAFDISNTSGIESVGSMVVYEDGKPKR 425

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVI 468
           + YRKF +    V+  +D A M  VL RRFS  ++   E           SF  +PD+++
Sbjct: 426 SDYRKFKIKT--VQGPNDYASMEEVLTRRFSHGMREVRELEEKGGDLNLGSFTRFPDLIM 483

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGG+GQ++ A  VL KL +   I +  + K                  + ++       
Sbjct: 484 MDGGRGQVNIALEVLDKLGLS--IPVCGMVKDDSHRTRG---LYYNNIEVPIDRHSEGFR 538

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            I R++DEAHRFAI  HR  R K    S LD+I GIGP R++ L++ F  ++ +  +S E
Sbjct: 539 LITRIQDEAHRFAIEYHRSLRGKGQVKSILDDIPGIGPARRKALMRHFKDIESVRAASVE 598

Query: 588 TLASIEGISKKIACKIYNHFHKNTSH 613
            L     ++K+ A  +Y  FH++   
Sbjct: 599 ELEQAPQMNKRAALAVYGFFHEDRPE 624


>gi|54025564|ref|YP_119806.1| excinuclease ABC subunit C [Nocardia farcinica IFM 10152]
 gi|81374328|sp|Q5YTP9|UVRC_NOCFA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|54017072|dbj|BAD58442.1| putative excision nuclease ABC subunit C [Nocardia farcinica IFM
           10152]
          Length = 673

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 184/667 (27%), Positives = 300/667 (44%), Gaps = 67/667 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   M++   ++ +TV 
Sbjct: 13  TIPVEPGVYKFRDSYGRVIYVGKAKSLRSRLNSYFADVASLHPRTKQMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P + +T   + P L+ +R +      YFG
Sbjct: 73  STEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEYPRLFVYRGARKKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSTGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V +   FL+G    +  ++ R M+ A    D+E+A   RD + AL         +  
Sbjct: 193 RAIVEDFCDFLAGRTDKMVRELERRMHAAAEDLDFETAARLRDDVQALRRALEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--------DSESTNAQILSYF 289
                D  +   ++    +Q      G+ RG   + +            +     ++  F
Sbjct: 253 TGTDADVIAFATDELEVAVQIFHVRDGRVRGQRGWVVDKSGDAVDSGTGDDETGALVEQF 312

Query: 290 LRQFYTDK--------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQG 335
           L QFY ++                P  +L+ +       L+    +  G  V++ VP++G
Sbjct: 313 LTQFYGEQVAYADQTPDEQPATVVPREVLVPQLPAGHEQLQEWLSRLRGSAVRLRVPQRG 372

Query: 336 EKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391
           +K+ + E    NA  +  Q          S    L+D      L   P RIE  D SH+ 
Sbjct: 373 DKKALAETVERNAKEALAQHKLKRAGDLTSRSAALQDIQDALDLDSAPLRIECVDISHVQ 432

Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN 450
           G   V  +VV  +    K+ YR + +     + + DD   +  V  RRF +L K  +   
Sbjct: 433 GTDVVASLVVFEDGLPRKSDYRHYAIKEAAGEGRSDDVGSIAEVTRRRFYRLRKERDEAE 492

Query: 451 --------------------------FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
                                          +   F   P++ ++DGG  Q++AA  VL 
Sbjct: 493 RDELDGTAAGAPLVDDDETPTSRPGIDPTTGRPRKFAYPPNLYVVDGGAPQVAAAAEVLD 552

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L + + + +I +AK  +     E +   + + ++L      L+ +QR+RDEAHRFAIT 
Sbjct: 553 ELGITD-VAVIGLAKRLE-----EVWVPGEPDPVILPRNSEALFLLQRVRDEAHRFAITF 606

Query: 545 HRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR +R  +   S LD + G+G  R+  L+  FG+V  +  ++ E +  + GI    A  +
Sbjct: 607 HRSKRSRRMTASALDSVRGLGAARRTALVTHFGSVAKLKEATVEEITEVPGIGVATAKAV 666

Query: 604 YNHFHKN 610
               H+ 
Sbjct: 667 LAALHQE 673


>gi|291616973|ref|YP_003519715.1| UvrC [Pantoea ananatis LMG 20103]
 gi|291152003|gb|ADD76587.1| UvrC [Pantoea ananatis LMG 20103]
          Length = 610

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 215/616 (34%), Positives = 340/616 (55%), Gaps = 31/616 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D +G V+YVGKA +L+KR+ SY  +N  + +   ++S I++I  TVT 
Sbjct: 13  TVTSEPGVYRMYDASGTVIYVGKAKDLKKRLTSYFRTNVGSRKTEALVSNIHHIDVTVTH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++     P L  HR +   +G YFGP
Sbjct: 73  TETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-SDVHPRLAMHRGAKHAKGEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183
           F +  AV +T+  LQ+ F +R C +SV+R+RTRPCL +QI RC GPC    +S E+Y + 
Sbjct: 132 FPNGYAVRETLALLQKVFPIRQCENSVYRNRTRPCLQYQIGRCLGPCVAGLVSEEEYAQQ 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
               + FL+G +  +   + R M  A+    +E A   RD++ A+  +          + 
Sbjct: 192 TDYVRLFLAGKDDQVLNLLVRRMEDASHALRFEEAARLRDQIQAVRRVTEKQFVSNQGDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297
           +D   + ++  +AC+   F   G+  G+ ++F K  +++  A+++  F+ QFY      +
Sbjct: 252 LDVIGVAYDAGMACLHVLFIRQGKVLGSRSYFPKVPADTDLAEVVQTFVGQFYLQGSEMR 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  ILL     E  LL  S  +  G +V I    +G++ + ++ A  NA  +   +LS
Sbjct: 312 TLPGEILLDFTLPERELLSESLTELAGRRVNIQSKPRGDRARYLKLARTNAGSALKTRLS 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              +    L    +   L  I  R+E +D SH MG   +   VV  +NG ++  YR++N+
Sbjct: 372 QHSTIHQRLTALAEFLELDKIT-RMECFDISHTMGEQTIASCVVFDQNGPLRADYRRYNI 430

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M  VL RR+ + I+ E+                PDV+++DGGKGQL+
Sbjct: 431 --AGITPGDDYAAMNQVLRRRYGKAIEEEK---------------IPDVILIDGGKGQLA 473

Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRL 533
            A+ V  +L+V   ++R  ++ +AKG  R AG+E  F + +GE + L+   P L+ IQ +
Sbjct: 474 QAKQVFAELDVSWDKSRPILLGVAKGTDRKAGLETLFFEAEGEGISLSPDAPALHVIQHI 533

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RD+AH  AI+ HRK+R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A++
Sbjct: 534 RDDAHNHAISGHRKKRAKVKNTSALESIEGVGPKRRQQLLKYMGGLQPLMNASVEEIANV 593

Query: 593 EGISKKIACKIYNHFH 608
            GIS  +A KIY    
Sbjct: 594 PGISHALAEKIYYSLK 609


>gi|331006167|ref|ZP_08329492.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC1989]
 gi|330420023|gb|EGG94364.1| Excinuclease ABC subunit C [gamma proteobacterium IMCC1989]
          Length = 608

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 219/616 (35%), Positives = 350/616 (56%), Gaps = 26/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +    GVYQM D   ++LYVGKA NL+ R+ SY   ++   +   ++ +I NI+ T+
Sbjct: 11  LKTVSRQAGVYQMFDANDKILYVGKAKNLKNRLSSYFKQSDLPIKTQVLVEKIANIQVTI 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E  AL+LE ++IK L+P++NILL+DDKS+PYI I+D    P +  HR     +G Y+
Sbjct: 71  AESETAALVLEQSLIKSLRPQYNILLKDDKSYPYIFISDS-DYPRISFHRGMKRKKGDYY 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +  AV ++++ +Q+TF +R C DSVF +RTRPCL +QI RC+ PC G I  E+Y  
Sbjct: 130 GPFPNSGAVYQSLSFIQKTFRVRQCEDSVFSNRTRPCLQYQINRCTAPCVGLIEKEQYKA 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA--ALSHIQNHNDSIYN 240
            +  A  FL+G +  L +++A  M  +    D+E A ++RD+++   +    +  +S   
Sbjct: 190 DMAHAALFLTGKSDELMKQLADKMEASASTLDFEEAGVYRDQISALRVIQTDHDLESDKG 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDK 297
           ++D F++       CI   +   G+  G+ +FF K   +  ++  LS FL QFY     +
Sbjct: 250 QIDVFAMAKKGGSLCIHLLYIRHGRVLGSKSFFPKNKLDLEDSDFLSAFLEQFYIAHQHR 309

Query: 298 PCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
             P+ I+++     EE ++LE +  ++   K+ I    + +++K +  AL  A ++ T  
Sbjct: 310 ELPQEIVINYPLNSEEKNVLEQALQERCNRKIPILHRVRAQRQKWLITALTAAEQNLTTH 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+T+ + Q       +   L  IPKR+E +D SH  G   V   VV  ++G + + YR+F
Sbjct: 370 LNTKQNLQQRFVALQEAMELDDIPKRLECFDISHTFGELTVASCVVFDQSGALTSDYRRF 429

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   + RR+++L K E                 PD++++DGGKGQ
Sbjct: 430 NIEG--ITESDDYAAMEQAISRRYTRLQKGE--------------GLLPDILVVDGGKGQ 473

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           L  A+ VL +L V N++ I+ IAKG  R AG E   ++ G+  VLN   P L+ +Q +RD
Sbjct: 474 LGVAKAVLAELGV-NQVMILGIAKGTTRKAGFETLVLESGKEKVLNSDSPALHLLQEIRD 532

Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT H++RR KK   S L+ I G+G  R+R LL+ FG ++ +  ++ + LA ++G
Sbjct: 533 EAHRFAITGHKQRRDKKRTTSTLEGIAGVGAKRRRELLRHFGGLQAVKAANADELAKVDG 592

Query: 595 ISKKIACKIYNHFHKN 610
           ISKKIA  IY+  H  
Sbjct: 593 ISKKIAEDIYSALHSE 608


>gi|170726504|ref|YP_001760530.1| excinuclease ABC subunit C [Shewanella woodyi ATCC 51908]
 gi|169811851|gb|ACA86435.1| excinuclease ABC, C subunit [Shewanella woodyi ATCC 51908]
          Length = 609

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 208/618 (33%), Positives = 328/618 (53%), Gaps = 28/618 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY   N    +   ++S I NI  TV
Sbjct: 10  LQSVSSSPGVYRMYDSEETVIYVGKAKDLKKRLTSYFRKNLPNVKTHALVSHIANIDVTV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E +ALLLE + IK+  PR+N+LLRDDKS+PYIL++  HK P L  HR     +GSYF
Sbjct: 70  THSETDALLLENDYIKQYMPRYNVLLRDDKSYPYILLS-HHKHPRLAYHRGPKRHKGSYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV ++++ +Q+ F +R C D  ++ R+RPCL +QI RCS PC  +I+ E+Y  
Sbjct: 129 GPYPNGGAVRESLHLMQKIFPIRQCEDVYYKARSRPCLQYQIGRCSAPCVAKINDEEYAA 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            V  A  FL G +  +  ++   M  A    +YE A   RD+++AL  +    +  +   
Sbjct: 189 QVKLASLFLKGRDQQVMSELVLKMETAAHMLEYEQAARFRDQISALRRVAEQQEVSHTSG 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296
            MD    Y+   +AC    F   G+  G+ +++ K  +++   ++LS F+ QFY +    
Sbjct: 249 DMDVIGAYYASGVACFHLLFIRDGKIFGSRSYYPKVPAQTELDEVLSSFMLQFYLNADSQ 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P+ ILLS +  +  +L  +       KV+I    + E+ K ++ AL NA  +   +L
Sbjct: 309 RTVPKEILLSHDFADLPVLVDAIQSALDKKVEIKTKVRSERAKFLKLALTNATNAVNTRL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +       +   +     R+E +D SH MG S V   VV    G  K +YR++N
Sbjct: 369 SHKSTVEQRFLLLEEAIEVSKAVTRMECFDISHTMGESTVASCVVFNREGPNKAEYRRYN 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M+  L RRF  + K                   PD++ +DGG GQL
Sbjct: 429 I--SGITPGDDYAAMKQALTRRFDNIEK---------------SGKVPDILFIDGGTGQL 471

Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533
             AQ V+ +   N++    +I +AKG  R  G+E     + E +  L      L+ IQ +
Sbjct: 472 RIAQKVVDEKFANLDVAPLLIGVAKGEGRKPGLETLIYGENEQSFTLPADSGALHLIQHI 531

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR +R+K    S L+ I G+GP R++ LLQ  G ++ +  +S   LA +
Sbjct: 532 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQYLGGIQEVKGASVSELAKV 591

Query: 593 EGISKKIACKIYNHFHKN 610
            GIS ++A  I++    +
Sbjct: 592 PGISVEMAQTIHDSLRGS 609


>gi|313837392|gb|EFS75106.1| excinuclease ABC subunit C [Propionibacterium acnes HL037PA2]
 gi|314927935|gb|EFS91766.1| excinuclease ABC subunit C [Propionibacterium acnes HL044PA1]
 gi|314971776|gb|EFT15874.1| excinuclease ABC subunit C [Propionibacterium acnes HL037PA3]
 gi|328907057|gb|EGG26823.1| excinuclease ABC, C subunit [Propionibacterium sp. P08]
          Length = 671

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 194/646 (30%), Positives = 317/646 (49%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 13  TIPTQPGVYRFSDEHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 73  QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T+ +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+ E +
Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITPETH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V E   F++G    + +++   M QA+   ++E A + RD L ALS     N  +  
Sbjct: 193 REIVDEFCDFMAGRTTKIVKRLKAEMVQASENLEFERAAVIRDSLGALSKTLERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +L+S       ++   F  + G  V+I VP++G+K  +++  
Sbjct: 313 ASDGQVRDDGHGNAIPPLVLVSTNPTNPDVMSTIFSSERGSHVEIRVPRRGDKATLMDTV 372

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P R+E YD SHI G + VG MV
Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQQALGLDRAPLRLESYDVSHIQGTNVVGSMV 432

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F +     +  DD A MR VL RR  +L+++ +             
Sbjct: 433 VFEDGMPRKSEYRRFIIKG--FEGSDDFAAMREVLFRRLRRLVEDRDAMVAAQAPDGDVG 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 491 SLIDPTTGAPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   +   ++L      LY +QRLRDEAHRFAIT HR +R KA   S LD I G+G  
Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGIPGLGET 605

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R++ L+  FG+V+ + +++ + +A + G   K+A ++     ++  
Sbjct: 606 RRKALVSHFGSVRALRKATVDDIAEVAGFGPKLAGEVVAALSQDKP 651


>gi|302525893|ref|ZP_07278235.1| excinuclease ABC, C subunit [Streptomyces sp. AA4]
 gi|302434788|gb|EFL06604.1| excinuclease ABC, C subunit [Streptomyces sp. AA4]
          Length = 679

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 190/665 (28%), Positives = 313/665 (47%), Gaps = 59/665 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P+ PGVY+  D A RV+YVGKA +L+ R+ SY    +    R   M++   ++ +
Sbjct: 13  QPGSIPDSPGVYKFRDDAKRVIYVGKAKSLRSRLNSYFADLSGLHPRTRQMVTTAASVEW 72

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE N IK   PRFN+  RDDKS+P + +T   + P L+ +R +      
Sbjct: 73  TVVGTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLHVYRGARKKGVR 132

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP++   A+ +T++ L R F  R+C+  VFR      RPCLL  I +CS PC G +S+
Sbjct: 133 YFGPYSHAWAIRETLDLLLRVFPARTCSAGVFRRHGQIGRPCLLGYIDKCSAPCVGRVSA 192

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           +++   V +   FL+G    + +++ R M  A+ + ++E A   RD L AL         
Sbjct: 193 DEHRAIVEDFCDFLAGRTDAMMKRLEREMAAASEELEFERAARLRDDLGALRRAMEKQAV 252

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           ++      D  +  H++  A +Q      G+ RG   + +    E     ++ +FL QFY
Sbjct: 253 VFGDGTDADVVAFAHDELEAAVQVFHVRGGRVRGQRGWVIDKAEEMDVQALVDHFLTQFY 312

Query: 295 TDKP-------------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            ++               P  +L+ E   +   +E       G +V++ V ++G+K+ + 
Sbjct: 313 GEESDRAGRDDLETGPVVPREVLVPELPADAEAVEEWLSGLRGSRVRLRVAQRGDKKALA 372

Query: 342 EQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397
           E    NA  + TQ          +    L++     AL   P RIE  D SHI G   V 
Sbjct: 373 ETVERNAKEAFTQHKLRRAGDLTARSAALQELQDYLALDTAPLRIECIDISHIQGSDVVA 432

Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH----- 452
            +VV  +    K++YRKF L     +   D A +  V+ RRF + +K             
Sbjct: 433 SLVVFEDGLPRKSEYRKFALREAATEG--DVASIAEVVRRRFYRYLKETAENAAETTETA 490

Query: 453 ---------------------PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
                                   +   F   P+++++DG   Q +AA  VL +L + + 
Sbjct: 491 DETGEEAGDEAIQPVRAGIDPETGRPRKFAYPPNLLVVDGAGPQATAAADVLAELGITD- 549

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-K 550
           I ++ +AK  +     E +   + + ++L      L+ +QRLRDEAHRFAI  HR++R K
Sbjct: 550 IAVVGLAKRLE-----EVWLPGEPDPMILPRTSDALFLLQRLRDEAHRFAIRYHREKRAK 604

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +   S LD + G+G  R+  L++ FG+VK + ++  E + ++ G  ++ A  +       
Sbjct: 605 RMQASELDSVPGLGQARRTALIKHFGSVKKLKQARVEEIEAVPGFGRRTAEAVVAALAGE 664

Query: 611 TSHTP 615
           T   P
Sbjct: 665 TGSAP 669


>gi|153001116|ref|YP_001366797.1| excinuclease ABC subunit C [Shewanella baltica OS185]
 gi|189038089|sp|A6WPJ5|UVRC_SHEB8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|151365734|gb|ABS08734.1| excinuclease ABC, C subunit [Shewanella baltica OS185]
          Length = 609

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 195/611 (31%), Positives = 325/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+   V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 16  SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHIDVTLTHSET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYIL++ +H+ P L  HR     +G YFGP+ +
Sbjct: 76  DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ R+RPCL +Q+ RCS PC G++S+  Y E V  A
Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +   +   M  A  ++ YE A   RD++ AL  +    +   N   MD  
Sbjct: 195 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            ++++  +AC    F   G+  G+ +++    +++   ++L  F+ QFY +    +  P+
Sbjct: 255 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +  +    K  I    + ++   +  A+ NA  +   +LS + +
Sbjct: 315 EVVISHNFEELHELEAAVSEALDKKFSIKTNVRADRASFLRLAVTNATNAVVTRLSHKNT 374

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L    +R+E +D SH MG S V   VV    G  K +YR++N+    
Sbjct: 375 VEQRFVLLEEILELSTPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 432

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++    +                PD++ +DGG GQL  AQ 
Sbjct: 433 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  ++++    +I +AKG  R  G+E   +   E +  L    P L+ IQ +RDE+H
Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   L  + GIS 
Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 598 EMAQTIHDALR 608


>gi|289705482|ref|ZP_06501874.1| excinuclease ABC, C subunit [Micrococcus luteus SK58]
 gi|289557711|gb|EFD51010.1| excinuclease ABC, C subunit [Micrococcus luteus SK58]
          Length = 641

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 194/634 (30%), Positives = 313/634 (49%), Gaps = 34/634 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63
           ++   PGVY+  D  GRV+YVGKA NL+ R+ SY         +   M+     + +TV 
Sbjct: 13  EISTSPGVYRFRDADGRVVYVGKAKNLRARLNSYFQDPARLATKTRTMVFTAAAVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EAL LE   IK  +PRFNI+ RDDKS+PY+ +T   + P +   R        YFG
Sbjct: 73  GSELEALQLEYTWIKEYRPRFNIMYRDDKSYPYLAVTMNEQFPRVQVMRGDRKPGVKYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+ +T++ + R F +R+C+  VF+    + RPCLL  I +CS PC G IS   +
Sbjct: 133 PFHPAKAIRETVDLMLRVFPVRTCSAGVFKRARAQDRPCLLGYIGKCSAPCVGRISPADH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F++G  +    ++ + M +A  +  YE A   RD +AAL  +   N  +  
Sbjct: 193 RALAQDFCDFMAGDANRFIGELEKAMARAVEELRYEDAARLRDDIAALRRVFERNAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L+ ++    +Q      G+ RG   + ++   +    +++++ L+Q Y D 
Sbjct: 253 ENTEADIFALHADELEVAVQVFHVRQGRIRGQRGWVMERVEDVAEPEMVAHLLQQVYGDL 312

Query: 298 P----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                 P  IL+  E ++ + L        G +V + VP++G K  ++E    NA  +  
Sbjct: 313 EGSERIPHEILVPVEPDDAAQLTEWLSGLRGSRVAVRVPRRGSKADLMETVRENAEMALK 372

Query: 354 QKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
              S       +    L++  +   +     RIE YD SH  G + VG MVV+ +    K
Sbjct: 373 LHKSRRSGDLTTRSAALRELQEALEITEPLLRIECYDISHSQGTNVVGSMVVMEDGLPKK 432

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN-------LNFHPKKQEYSFPS 462
             YR+FN+       +DD A +R VL RRF++L K           +    ++    F  
Sbjct: 433 KDYRRFNVTGE--AARDDTASLRDVLRRRFARLAKERAEGAPLSGQVEGDDQESGRRFAY 490

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            P +V++DGG  Q++AA  VL++L +++ + ++ +AK  +     E +       +VL  
Sbjct: 491 PPSLVVVDGGPPQVAAAAAVLEELGLDD-LPVVGLAKRLE-----EVWLPGDEFPVVLPR 544

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581
               LY +QR+RDE+HRFAI  HR RR KA   S LD I G+GP ++  LL  FG+V  I
Sbjct: 545 TSEGLYLLQRIRDESHRFAIAGHRSRRSKAMTVSALDGIPGLGPAKRTALLNHFGSVAEI 604

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
             +  + L  + GI  ++A  ++      T+ TP
Sbjct: 605 RAAGVDRLTEVAGIGPRLAEAVHTAL---TADTP 635


>gi|282862018|ref|ZP_06271081.1| excinuclease ABC, C subunit [Streptomyces sp. ACTE]
 gi|282563043|gb|EFB68582.1| excinuclease ABC, C subunit [Streptomyces sp. ACTE]
          Length = 697

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 180/663 (27%), Positives = 315/663 (47%), Gaps = 71/663 (10%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+P+ PGVY+  D   RV+YVGKA NL++R+ +Y         R   M++   ++ +
Sbjct: 10  KPGQIPDSPGVYKFRDEHRRVIYVGKAKNLRQRLANYFQDLAGLHPRTRTMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      
Sbjct: 70  TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKKKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ + R F +R+C+  VF++     RPCLL  I +CS PC G ++ 
Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKNAERTGRPCLLGYIGKCSAPCVGRVTP 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           +++ +   +   F++G       ++ ++M +A  + +YE A   RD   AL      +  
Sbjct: 190 QEHRDLAEDFCDFMAGRTGTYIRRLEKDMTRAAEEMEYERAARLRDDAEALKRAMEKSAV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +          A ++ + L+Q Y
Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLY 309

Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    E+T  +      + G  V + +P++G+K+ ++     NA ++
Sbjct: 310 GEESGDAVPKEVLVPALPEDTEAVSQWLAGRRGSHVSLRIPQRGDKKDLMVTVQRNAQQA 369

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P R+E +D SH+ G   V  MVV  +   
Sbjct: 370 LGLHKTKRASDLTTRSRALEEIAEALGLDTAPLRVECFDISHLQGDDVVASMVVFEDGLA 429

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE-------------------- 447
            K++YR+F +     + QDD   M  V+ RRF + ++ +E                    
Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFKRHLQEKERTGEWEGASAASGPVPGPAP 487

Query: 448 ----------------------------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
                                       + +     +   F   P +V++DGG+ Q++AA
Sbjct: 488 SGPVPAPAAAFPGSVPAGPQDAPQDAPQDGSREEDGRPRRFAYPPQLVVVDGGQPQVAAA 547

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           +  L +L +++ I +  +AK  +     E +     + +VL      LY +QR+RDEAHR
Sbjct: 548 KRALDELGIDD-IAVCGLAKRLE-----EVWLPDDDDPVVLPRSSEGLYLLQRIRDEAHR 601

Query: 540 FAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT  R +R K    SPLD+I G+G  RK+ L++ FG+VK + +++ E +  + GI ++
Sbjct: 602 FAITYQRAKRAKRIRSSPLDDIAGLGETRKQALIKHFGSVKRLRQATIEEICEVPGIGRR 661

Query: 599 IAC 601
            A 
Sbjct: 662 TAE 664


>gi|262202286|ref|YP_003273494.1| excinuclease ABC subunit C [Gordonia bronchialis DSM 43247]
 gi|262085633|gb|ACY21601.1| excinuclease ABC, C subunit [Gordonia bronchialis DSM 43247]
          Length = 671

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 182/654 (27%), Positives = 300/654 (45%), Gaps = 51/654 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   M++   ++ +TV 
Sbjct: 13  TIPTEPGVYRFRDAHGRVIYVGKAKSLRSRLTSYFADIASLHPRTRQMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P + +T   + P L+ +R        YFG
Sbjct: 73  GTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPMLAVTLNEEYPRLFVYRGPRRRGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +C+ PC G +S+E++
Sbjct: 133 PYSHAWAIRETVDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCAAPCVGRVSAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V +   FL+G    +  ++ R M+ A  + D+E A   RD + A+         +  
Sbjct: 193 REIVDDFCDFLAGRTDQMIRRMEREMSAAATELDFERAARLRDDIGAMRRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +   +     +Q      G+ RG   + ++     +   ++  FL QFY  +
Sbjct: 253 DGTDADVVAFAGDDLEVSVQIFHVRDGRVRGQRGWVVERSDNGSVGDLVGDFLTQFYGQQ 312

Query: 298 -----------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340
                              P  +++ E   + + LE    +  G +V++ VP++G+K+ +
Sbjct: 313 VDLDATVEIGAGRARGDAVPREVMVPELPSDAAELEDWLSELRGSRVRLRVPQRGDKKAL 372

Query: 341 IEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396
            +    NA  +  Q          +    L +  +   L   P RIE  D SH+ G   V
Sbjct: 373 FDTVGRNASEALAQHKLRRAGDLTTRSAALTELQESLGLDQAPLRIECVDISHVQGTDVV 432

Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLNFH--- 452
             +VV  +    K+ YR +++         DD A +  V  RRF +   ++         
Sbjct: 433 ASLVVFEDGLPRKSDYRHYSIRHAAGDGHSDDVASIAEVTRRRFLRHRADQLPAPPPMES 492

Query: 453 ------------PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                              F   P++ ++DGG  Q+ AA  VL +L + + +++I +AK 
Sbjct: 493 GPAPTGTPEADVAPPVPKKFAYPPNLFVVDGGAPQVHAAAAVLDELGITD-VSVIGLAKR 551

Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDE 559
            +     E +     E ++L      L+ +QR+RDEAHRFAIT HR +R K    S LD 
Sbjct: 552 LE-----EVWTPGDDEPIILPRAGEALFLLQRVRDEAHRFAITFHRNKRSKRMTESVLDG 606

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           + G+G  RK  L+  FG+V  +  +S E ++ + GI    A  +     ++   
Sbjct: 607 VPGLGRTRKTALVTHFGSVARLREASLEDISGVPGIGMATARAVQAALGEDGRD 660


>gi|17545790|ref|NP_519192.1| excinuclease ABC subunit C [Ralstonia solanacearum GMI1000]
 gi|81505682|sp|Q8Y0H3|UVRC_RALSO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|17428084|emb|CAD14773.1| probable excinuclease abc subunit c (sos response dna repair
           protein) [Ralstonia solanacearum GMI1000]
          Length = 654

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 212/641 (33%), Positives = 321/641 (50%), Gaps = 52/641 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I +I  TV  
Sbjct: 29  RLPSLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIAHIETTVVR 88

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T +H  P +  +R ++  +  YFGP
Sbjct: 89  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-QHAYPRMAYYRGATDRKHQYFGP 147

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC   IS+E Y   V
Sbjct: 148 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISAEDYARDV 207

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240
             A  FL G    + + +   M +     ++E A   RD++ ALS +            +
Sbjct: 208 ANAAGFLLGRQDEVMQTLQDKMQRHAAALEFEQAATVRDQIGALSTVLTRQSVEEVGQAS 267

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276
            +D  ++      AC+       G++ G   +F                           
Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADVPEGAETQP 327

Query: 277 ----DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
               D E     IL  F+ Q Y D+  P  +++S       L+E    +  G +V +   
Sbjct: 328 EPARDPERMARDILEAFVAQHYLDQFVPPVLVVSHPIRAAGLIEALAAQA-GRRVSVVRQ 386

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389
            QG +R  +E A   A  S  ++LS + S Q   +   +   +        R+E +D SH
Sbjct: 387 PQGARRAWLEMAEKGAELSLARRLSEQGSQQARTRALAETIGVDLEDLAALRVECFDISH 446

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G +     VV   +     +YR++N+    +   DD A MR VL RR+ ++++     
Sbjct: 447 TAGEATQASCVVFHSHAMQNGEYRRYNIQD--IIPGDDYAAMRQVLTRRYQKVVEQAAE- 503

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                      P  P VV++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+E 
Sbjct: 504 ---------DAPDMPRVVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 553

Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R KA   S L+EI GIG  R
Sbjct: 554 LVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKR 613

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S E LA++EGIS+ +A +IY   H
Sbjct: 614 RQRLLARFGGLRGVMAASVEELATVEGISQTLAEEIYRQLH 654


>gi|21231559|ref|NP_637476.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768321|ref|YP_243083.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|81305705|sp|Q4UV60|UVRC_XANC8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|81793864|sp|Q8P8W9|UVRC_XANCP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|21113244|gb|AAM41400.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573653|gb|AAY49063.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 618

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/607 (37%), Positives = 341/607 (56%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  RLSTAPGVYRMYAADDSLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T +   P +  HR    + G YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVNGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +A V AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC   ++++ Y E V
Sbjct: 136 YAGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVDLVAAQDYQEAV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I  +M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     + AC+    F  G+N GT +FF KT+ E +  +IL+ F+ Q+Y +   P  
Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSAEEILAAFVSQYYAEHAPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  +  L+E +      +KV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDREIPDAELIEAALSAAAEHKVALKWNVRGERAGYLLLASRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+  + +
Sbjct: 376 HARSEALREMLGLAEQVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++                   PDV+++DGG GQL+ AQ  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L +EN + ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGIEN-VLLVGVAKGEERRAGHEALILADGRELRPGAASPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EG++  +A 
Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|126666396|ref|ZP_01737375.1| excinuclease ABC subunit C [Marinobacter sp. ELB17]
 gi|126629197|gb|EAZ99815.1| excinuclease ABC subunit C [Marinobacter sp. ELB17]
          Length = 588

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 216/605 (35%), Positives = 330/605 (54%), Gaps = 26/605 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D AG+VLYVGKA NL+ R+ SY  +     +   ++++I +I  T+T +E EALLLE 
Sbjct: 1   MYDAAGKVLYVGKARNLKNRVSSYFRNTGLAPKTQALVAKICSIEVTITGSETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYFGPFASVDAVEK 133
           N+IK L+P +NILLRDDKS+PYI ++     P+L   R  +    G++FGPF S  AV++
Sbjct: 61  NLIKSLRPPYNILLRDDKSYPYIYVSAHQDYPSLTFRRGRTKKGGGTWFGPFPSSGAVKE 120

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           ++N LQ+ F +RSC +S FR+R RPCL +QI RC+ PC   IS E Y + +  A  FL G
Sbjct: 121 SLNVLQKVFRIRSCNESYFRNRNRPCLQYQINRCTAPCVDYISPEDYQQDIRRAAMFLEG 180

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNK 251
            N  + E + + M  A  + ++E A  +RD++  L H+Q            D  ++  + 
Sbjct: 181 KNPVVIEDLMQAMEAAAAELNFEKAAAYRDQMNHLRHVQEQQSVDGEGGDADVIAITQDA 240

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307
            + C+       G+  GT  +F +   E ++ ++L+ FL Q+Y    T +  P++IL+S 
Sbjct: 241 GIVCVVVIIVRGGRVLGTKDYFPRFIIEQSDGELLAAFLGQYYFAGDTRREIPQDILVSS 300

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
           E E  +LL  +  +      +I    +GE+R+ +E A  NA ++    L+++ +    L 
Sbjct: 301 EPEGMALLAEALSEAAKRDTRIRGNVRGERRRWLELAQTNARQTLLTHLASKETVYRRLL 360

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
                  L   P R+E +D SH  G + V   VV  ENG +K+ YR +N+    +   DD
Sbjct: 361 ALKDLLDLAETPARMECFDVSHSHGENTVASCVVFDENGPLKSDYRLYNIEG--ITGGDD 418

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A MR VL RR+ +L+  E                 P +V +DGG GQL+ A+ V + L 
Sbjct: 419 YAAMRQVLTRRYKRLVAGE--------------GKRPSLVFIDGGIGQLNIAREVFESLE 464

Query: 488 VENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
           + + I +I +AKG  R AGME+      G    +    P L+ IQ +RDE+HRFAIT HR
Sbjct: 465 LTD-IPLIGVAKGAARRAGMEQLIDAVTGRVFRVPADSPGLHLIQHIRDESHRFAITGHR 523

Query: 547 KRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            RR KK   S L+ I G+GP R+R L++ FG ++ + ++  + +  I GISK +A  IY 
Sbjct: 524 ARRDKKRRQSTLEGIEGVGPKRRRDLIRYFGGIQELLKAGIDEMIKIPGISKALAETIYA 583

Query: 606 HFHKN 610
             H  
Sbjct: 584 ALHDE 588


>gi|315267977|gb|ADT94830.1| excinuclease ABC, C subunit [Shewanella baltica OS678]
          Length = 610

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 196/611 (32%), Positives = 325/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+   V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 17  SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHIDVTLTHSET 76

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYIL++ +H+ P L  HR     +G YFGP+ +
Sbjct: 77  DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 135

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ R+RPCL +QI RCS PC G++S+  Y E V  A
Sbjct: 136 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQISRCSAPCVGKVSNADYDEQVKLA 195

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +   +   M  A  ++ YE A   RD++ AL  +    +   N   MD  
Sbjct: 196 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 255

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            ++++  +AC    F   G+  G+ +++    +++   ++L  F+ QFY +    +  P+
Sbjct: 256 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 315

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +  +    K  I    + ++   +  A+ NA  +   +LS + +
Sbjct: 316 EVVISHNFEELHELEAAISEALDKKFSIKTNVRADRASFLRLAVTNATNAVVTRLSHKNT 375

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L    +R+E +D SH MG S V   VV    G  K +YR++N+    
Sbjct: 376 VEQRFVLLEEILELSTPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 433

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++    +                PD++ +DGG GQL  AQ 
Sbjct: 434 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 478

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  ++++    +I +AKG  R  G+E   +   E +  L    P L+ IQ +RDE+H
Sbjct: 479 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 538

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   L  + GIS 
Sbjct: 539 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 598

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 599 EMAQTIHDALR 609


>gi|160875788|ref|YP_001555104.1| excinuclease ABC subunit C [Shewanella baltica OS195]
 gi|189038090|sp|A9L582|UVRC_SHEB9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|160861310|gb|ABX49844.1| excinuclease ABC, C subunit [Shewanella baltica OS195]
          Length = 609

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 196/611 (32%), Positives = 325/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+   V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 16  SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHIDVTLTHSET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYIL++ +H+ P L  HR     +G YFGP+ +
Sbjct: 76  DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ R+RPCL +QI RCS PC G++S+  Y E V  A
Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQISRCSAPCVGKVSNADYDEQVKLA 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +   +   M  A  ++ YE A   RD++ AL  +    +   N   MD  
Sbjct: 195 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            ++++  +AC    F   G+  G+ +++    +++   ++L  F+ QFY +    +  P+
Sbjct: 255 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +  +    K  I    + ++   +  A+ NA  +   +LS + +
Sbjct: 315 EVVISHNFEELHELEAAISEALDKKFSIKTNVRADRASFLRLAVTNATNAVVTRLSHKNT 374

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L    +R+E +D SH MG S V   VV    G  K +YR++N+    
Sbjct: 375 VEQRFVLLEEILELSTPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 432

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++    +                PD++ +DGG GQL  AQ 
Sbjct: 433 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  ++++    +I +AKG  R  G+E   +   E +  L    P L+ IQ +RDE+H
Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   L  + GIS 
Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 598 EMAQTIHDALR 608


>gi|325917588|ref|ZP_08179788.1| Excinuclease ABC subunit C [Xanthomonas vesicatoria ATCC 35937]
 gi|325536222|gb|EGD08018.1| Excinuclease ABC subunit C [Xanthomonas vesicatoria ATCC 35937]
          Length = 618

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/607 (38%), Positives = 340/607 (56%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAADDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T +   P +  HR    +QG YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVQGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V  V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC   +++  Y E V
Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I ++M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRGMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +       AC+    F  G+N GT +FF KT+ E +  +IL+ F+ Q+Y +   P  
Sbjct: 256 DVLACATQATQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILAAFVSQYYAEHAPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  E  L+E +      +KV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDREIPEAELIEAALSAAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+  + +
Sbjct: 376 HARSEALREMLGLAEQVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++                   PDV+++DGG GQL+ AQ  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VEN + ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGVENVV-LVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EG++  +A 
Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|163751600|ref|ZP_02158821.1| excinuclease ABC subunit C [Shewanella benthica KT99]
 gi|161328512|gb|EDP99666.1| excinuclease ABC subunit C [Shewanella benthica KT99]
          Length = 609

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 204/616 (33%), Positives = 325/616 (52%), Gaps = 28/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY   N    +   ++S I NI  TV
Sbjct: 11  LKSVSSSPGVYRMYDAEDVVIYVGKAKDLKKRLSSYFRKNLVHVKTQALVSHIANIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E +AL+LE + IK+  PR+N+LLRDDKS+PYIL++  HK P L  HR S   +G+YF
Sbjct: 71  THSETDALILENDYIKQYMPRYNVLLRDDKSYPYILLS-HHKHPRLAYHRGSKRDKGTYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV ++++ +Q+ F +R C D  ++ R+RPCL +QI RCS PC  +ISSE+Y  
Sbjct: 130 GPYPNGGAVRESLHLMQKIFPIRQCDDLYYKSRSRPCLQYQIGRCSAPCVDKISSEEYEA 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240
            V  A  FL G N  +  ++   M       +YE A  +RD+++AL  +    +      
Sbjct: 190 QVKLASLFLKGKNQQVMVELVSKMEACAQSLEYEKAASYRDQISALRRVAEQQEVSGTSG 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296
            MD    ++   +AC    F   G+  G+ +++     ++   ++LS F+ QFY +    
Sbjct: 250 DMDVIGAHYASGVACFHLLFIRNGKIFGSRSYYPSVPDQTDMDEVLSAFMIQFYLNGDSQ 309

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P+ ILLS+  ++   LE +       KV+I    + E+   +  A+ NA  +   +L
Sbjct: 310 RTVPKEILLSQSFDDLPQLEKAIQTALDKKVEIKTNVRSERANFLRLAVTNATNAVNTRL 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +       +   +    +R+E +D SH MG S V   VV    G  K  YR +N
Sbjct: 370 SHKNTVEQRFLLLEEALDMTTRVQRMECFDISHTMGESTVASCVVFNREGPNKADYRHYN 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  N +   DD A M+  + RRF ++ K                   PD++ +DGG GQL
Sbjct: 430 I--NGITPGDDYAAMKQAITRRFDKIDK---------------TGKIPDILFIDGGLGQL 472

Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533
             AQ ++ +   +++    +I IAKG  R  G+E     + E +  +      L+ IQ +
Sbjct: 473 RIAQKIIDEKFAHLDTAPMLIGIAKGEGRKPGLETLIYGENELSFSIAADSGALHLIQHI 532

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR +R+K    S L+ I G+GP R++ LLQ  G ++ +  +S   +A +
Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQFLGGLQEVKNASVAEMAKV 592

Query: 593 EGISKKIACKIYNHFH 608
            GIS  +A KI++   
Sbjct: 593 PGISVDMAKKIHDSLR 608


>gi|145224297|ref|YP_001134975.1| excinuclease ABC subunit C [Mycobacterium gilvum PYR-GCK]
 gi|315444630|ref|YP_004077509.1| excinuclease ABC subunit C [Mycobacterium sp. Spyr1]
 gi|189038067|sp|A4TC09|UVRC_MYCGI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|145216783|gb|ABP46187.1| Excinuclease ABC subunit C [Mycobacterium gilvum PYR-GCK]
 gi|315262933|gb|ADT99674.1| Excinuclease ABC subunit C [Mycobacterium sp. Spyr1]
          Length = 678

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 191/640 (29%), Positives = 305/640 (47%), Gaps = 43/640 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY    +    R   M+   +++ +TV 
Sbjct: 13  SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFADISGLAPRTRQMVMTASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFNI  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  GTEVEALQLEYNWIKEFDPRFNIRYRDDKSYPVLAVTLNEEYPRLKVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C++ VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETVDLLTRVFPARTCSNGVFKRHSQIDRPCLLGYIDKCSAPCVGRVSAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FL+G    L  ++ + M  A    D+E A   RD + A+         +  
Sbjct: 193 RQIVQDFCDFLAGKTDRLIREMEQQMTAAAEDLDFERAARLRDNIGAMRRAMEKQTVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT---DSESTNAQILSYFLRQFY 294
                D  +   ++  A +Q      G+ RG   + ++      EST   ++  FL QFY
Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWVIEKSGEPGESTLEYLVEQFLTQFY 312

Query: 295 TD----------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKR 338
            D                 P P+ +L+    E T  LE    +  G +V + VP++G+KR
Sbjct: 313 GDQAELGGASDAGGDEASNPVPKQVLVPVLPETTDELETWLSQLRGSRVALRVPQRGDKR 372

Query: 339 KIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394
            + E    NA  +  Q               L+   +   L   P RIE  D SH+ G  
Sbjct: 373 ALAETVKRNAEGALNQHKLKRAGDFTARSAALQSIQENLGLQDAPLRIECIDISHVQGTD 432

Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN-EENLNFH 452
            V  +VV  +    K+ YR F +       + DD A +  V  RRF + +++ +E     
Sbjct: 433 VVASLVVFEDGLPRKSDYRHFAIREAAGDGRSDDVASIAEVTRRRFHRHLRDMQEPGEMV 492

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
            + +   F   P++ ++DGG  Q++AAQ VL  L + + + +I +AK  +     E +  
Sbjct: 493 AEGRSRRFAYPPNLFVVDGGAPQVNAAQAVLDDLGISD-VAVIGLAKRLE-----EVWVP 546

Query: 513 K----KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLR 567
                  + ++       LY +QR+RDEAHRFAI+ HR +R K    S LD + G+G  R
Sbjct: 547 NLDGTAPDPIIFPRNSDGLYLLQRVRDEAHRFAISYHRSKRSKRMTASALDSVRGLGEHR 606

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           ++ L+  FG++  + +++ E +  + GI    A  + +  
Sbjct: 607 RKALVTHFGSLARLKQATVEEITEVPGIGAATARAVLDAL 646


>gi|166031032|ref|ZP_02233861.1| hypothetical protein DORFOR_00713 [Dorea formicigenerans ATCC
           27755]
 gi|166029299|gb|EDR48056.1| hypothetical protein DORFOR_00713 [Dorea formicigenerans ATCC
           27755]
          Length = 612

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 201/619 (32%), Positives = 333/619 (53%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D   +++YVGKA +L+ R++ Y  S+ N   +I  M++ I+   +
Sbjct: 7   ELKKLPGKPGVYLMHDETDKIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHISRFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDK++P+I +T +   P +   R     +  
Sbjct: 67  IVTDSELEALVLECNLIKEHRPKYNTMLMDDKAYPFIKVTVQEPFPRVMLARRVQKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  +++ +F+RSC   + +   + RPCL + I +C  PC G IS E
Sbjct: 127 YFGPYTSAGAVKATIELIRKLYFIRSCNRRLPKDIGKERPCLNYHIHQCKAPCQGYISKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y + V E   FL+G    + EK+   M +A+   ++E AI +R+ + ++  I       
Sbjct: 187 EYRKSVEEVLHFLNGNYDPILEKLKAQMEEASESLEFERAIEYRELINSVQKIAQKQKIT 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           D+  +  D  ++  +   A +Q  F   G+  G   F+LK   + T A+ILS F++QFY 
Sbjct: 247 DTAGDDRDIVAVSKDLEDAVVQVFFIRNGRLIGRDHFYLKLVDKETKAEILSSFIKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  I+L EE  +  ++E    ++  +KV + +PK+G K K++E A  NA      
Sbjct: 307 GTPYIPGQIMLPEEIPDHEIIEEWLTRKKEHKVHLVIPKKGTKEKLVELAEKNARMVLTK 366

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      L     R+E YD S+  G  +VG MVV  +    +N
Sbjct: 367 DKERIKREEGRTIGAVKELQNLLGLT-GLHRMEAYDISNTNGFESVGSMVVYEKGKPKRN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    VK  +D A M  VL RRF   ++ +E       ++  SF  +PD++++D
Sbjct: 426 DYRKFKIKG--VKGANDYASMNEVLTRRFGHGLREKEE-----GRELGSFTVFPDLILMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL KLN++  I +  + K          +     E + ++        I
Sbjct: 479 GGKGQVNIALEVLDKLNLD--IPVCGMVKDDHHRTRGLYYH---NEEIPIDRNSEAFRLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAIT HR+ R +   +S LD+I G+GP R++ L++ F  ++ I  ++ E L
Sbjct: 534 TRIQDEAHRFAITFHRQLRSQGQVHSILDDIPGVGPARRKDLMKHFANIEAIKNATVEEL 593

Query: 590 ASIEGISKKIACKIYNHFH 608
            S+  +++K A  +Y+ FH
Sbjct: 594 KSLPSMNEKSAKDVYDFFH 612


>gi|165975733|ref|YP_001651326.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|229557976|sp|B0BT25|UVRC_ACTPJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|165875834|gb|ABY68882.1| excinuclease ABC, subunit C [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 610

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 202/618 (32%), Positives = 331/618 (53%), Gaps = 33/618 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    ++YVGKA +L+KR+ SY  S   + +   +++ I++I  T+T 
Sbjct: 10  DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +P++N+LLRDDKS+PYIL+T KH+ P +   R S  + G YFGP
Sbjct: 70  SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y   
Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVESYYSQAEYDNQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V+  + FL G +  + E + + M  A  + D+E+A   RD++ ++  +Q          +
Sbjct: 189 VNLVRLFLQGKDGQVIEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+   F   G+  G  ++F K  + +  +++   F+ QFY      
Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I++ +   E  +L ++   +            +G+K + +  A  NA  + T +
Sbjct: 309 RTIPNQIIIDQPLSESAALADVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  +   +           L  I  R+E +D SH MG   V   VV  ENG +K+ YR+F
Sbjct: 369 LKQDTHIRQRYDSLKTLLNLAEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   L +R+S+ ++ E+                PD++ +DGGKGQ
Sbjct: 428 NIEG--ITGGDDYAAMEQALLKRYSRHLEEEK---------------IPDIIFIDGGKGQ 470

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A      LNV   + +  +I +AKG +R AG+E   + K  + + L    P L+ IQ
Sbjct: 471 LNRALETFASLNVSWDKRKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + 
Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKAATLEEIQ 590

Query: 591 SIEGISKKIACKIYNHFH 608
           S+ GISK++A  I++   
Sbjct: 591 SVPGISKQLAEVIFDTLQ 608


>gi|298243695|ref|ZP_06967502.1| excinuclease ABC, C subunit [Ktedonobacter racemifer DSM 44963]
 gi|297556749|gb|EFH90613.1| excinuclease ABC, C subunit [Ktedonobacter racemifer DSM 44963]
          Length = 690

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 209/668 (31%), Positives = 329/668 (49%), Gaps = 66/668 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63
            +P  PG+Y M D  G ++YVGKA +L  R++SY   S +H+ +   M+++I +I F V 
Sbjct: 11  SLPHKPGIYLMKDGEGTIIYVGKAISLYNRVRSYFQESTDHSPKNRSMVAKIEDIEFLVV 70

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVEAL+LE+N IK+ +P++N+LLRDDKS+PYI ++     P +Y+ R        YFG
Sbjct: 71  RNEVEALVLESNYIKQYRPKYNVLLRDDKSYPYIKVSLNEDFPRVYRVRSFQRDGNRYFG 130

Query: 124 PFASVDAVEKTINSLQRTFFLRSCAD----------------SVFRHRTRPCLLFQIKRC 167
           P+ +  AV+ T++ L + F  R+C                     +   RPC  + I RC
Sbjct: 131 PYTNSGAVDATLDLLNKLFAFRTCRYDASVWAPPRTGEPHAGWKQKLLNRPCTQYYIHRC 190

Query: 168 SGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAA 227
             PC G  S E+Y + + +   FL G +  + + + R M +A    ++E A   RDR+ A
Sbjct: 191 IAPCVGYASREEYDKIIQQVILFLEGKHDEVLKDLQRRMEEAAESLNFEEAARIRDRIKA 250

Query: 228 LSHIQNHNDSIY----NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA 283
           +  +      I     +  D  +L    +  C Q  FF  G+  G   F L+   +S  +
Sbjct: 251 VERVLEKQRIINTEGQDDQDVVALASGDDETCAQVFFFRSGKLIGREYFILQGTRDSAPS 310

Query: 284 QILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKV--------KITVPKQ 334
           +I+S FL+QFY   P  P  IL+  E ++  +L+    ++              I  PK+
Sbjct: 311 EIMSSFLQQFYESSPHIPAEILVEAEPDDREVLQSWLKEKRRGTSAAGRSASVTINEPKR 370

Query: 335 GEKRKIIEQALINAHRS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHI 390
           GEK +++E    NA         + L+     QM L++  +   L   P+RIE YD S+ 
Sbjct: 371 GEKLRLVEMVHNNAKEVLEQQRIKWLTDSQKTQMALEELQEALNLISAPQRIECYDISNT 430

Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN 450
            G ++VG M V        ++YR+F +    V+  +D A  + VL RRF +    +E   
Sbjct: 431 QGSNSVGAMAVFEGGKPKNSEYRRFKIKT--VEGANDVASHQEVLRRRFRKAAALQEATL 488

Query: 451 FHPKKQE-----------------------YSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
                                             + PD++++DGGK QL+AA  VL++L 
Sbjct: 489 ERESAAAVDRVSQRANGEEETGGESEQNALQHNWAMPDLILIDGGKPQLNAALQVLQELE 548

Query: 488 VENRITIISIAKGP---KRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAIT 543
           ++  I I+ +AK      RS   E+  +    E ++L      LY +QR+RDEAHRF IT
Sbjct: 549 MD--IPIVGVAKEEGSHTRSTTQEELHIPGTLEPILLPRNSQGLYLVQRIRDEAHRFGIT 606

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRK R      S LDEI GIGP RK+ L++ FG+V+ IS +S + L +I+G+++  A K
Sbjct: 607 YHRKLRTNRTFKSLLDEIPGIGPKRKQALMKHFGSVRAISTASLDELTAIDGMTRDSAEK 666

Query: 603 IYNHFHKN 610
           +     +N
Sbjct: 667 VKEFIGRN 674


>gi|217972960|ref|YP_002357711.1| excinuclease ABC subunit C [Shewanella baltica OS223]
 gi|217498095|gb|ACK46288.1| excinuclease ABC, C subunit [Shewanella baltica OS223]
          Length = 610

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 195/611 (31%), Positives = 325/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+   V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 17  SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHIDVTLTHSET 76

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYIL++ +H+ P L  HR     +G YFGP+ +
Sbjct: 77  DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 135

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ R+RPCL +Q+ RCS PC G++S+  Y E V  A
Sbjct: 136 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 195

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +   +   M  A  ++ YE A   RD++ AL  +    +   N   MD  
Sbjct: 196 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 255

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            ++++  +AC    F   G+  G+ +++    +++   ++L  F+ QFY +    +  P+
Sbjct: 256 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 315

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +  +    K  I    + ++   +  A+ NA  +   +LS + +
Sbjct: 316 EVVISHNFEELHELEAAISEALDKKFSIKTNVRADRASFLRLAVTNATNAVITRLSHKNT 375

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L    +R+E +D SH MG S V   VV    G  K +YR++N+    
Sbjct: 376 VEQRFVLLEEILELSAPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 433

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++    +                PD++ +DGG GQL  AQ 
Sbjct: 434 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 478

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  ++++    +I +AKG  R  G+E   +   E +  L    P L+ IQ +RDE+H
Sbjct: 479 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 538

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   L  + GIS 
Sbjct: 539 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 598

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 599 EMAQTIHDALR 609


>gi|253990046|ref|YP_003041402.1| excinuclease ABC subunit C [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781496|emb|CAQ84659.1| uvrabc system protein c (protein uvrc) (excinuclease abc subunit c)
           [Photorhabdus asymbiotica]
          Length = 610

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 214/618 (34%), Positives = 337/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D +G V+YVGKA +L+KR+ SY  +   + +   ++  I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDTSGTVIYVGKAKDLKKRLSSYFRARVASRKTESLVKNITQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLHQPRYNVLLRDDKSYPYIFLSTD-NHPRLAIHRGAKHSKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +++  LQ+ F +R C DSV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNSHAVRESLILLQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLGPCVKGLVSEEEYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
           + V   + FLSG +  +  ++   M +A+ +  +E A  +RD++ A+  +          
Sbjct: 190 QQVDYIRLFLSGKDQQVLTQLINRMEEASQQLKFEDAAKYRDQILAVRQVTERQFVSGTD 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
           + +D  S+     +AC+   F   G+  G+ +++ K  + +   +I+  FL QFY     
Sbjct: 250 DDLDVISIAFEAGMACLHVLFIRQGKVLGSRSYYPKIPTGTELNEIVQTFLGQFYLQGSQ 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           ++  P  ILL    +E  +L  S  +  G K+ I    +G++ + ++ A  NA  +   +
Sbjct: 310 NRTLPSEILLDFALQEKEILSDSLSEISGRKIHIQTRPRGDRARYLKLARTNAATALVTR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L+   K   L    +R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTIHQRLESLAKLVNLA-KIQRMECFDISHTMGEQTVASCVVFDSNGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL RR+ + +   +                PD++ +DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMNQVLRRRYGKALDESK---------------IPDIIFIDGGKGQ 471

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQ 531
           L+ A  V + L VE    R  +IS+AKG  R AG+E  F   G E++ L    P L+ IQ
Sbjct: 472 LTQAINVFQSLEVEWDKTRPQLISVAKGSDRKAGLETLFFATGSESMALPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  ++ E +A
Sbjct: 532 HIRDESHHHAITGHRQRRTKVKNTSILESIEGVGPKRRQMLLKYMGGLQPLRNANVEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            I  IS  +A KI+N   
Sbjct: 592 KIPTISYALAEKIHNALK 609


>gi|147679071|ref|YP_001213286.1| excinuclease ABC subunit C [Pelotomaculum thermopropionicum SI]
 gi|146275168|dbj|BAF60917.1| nuclease subunit of the excinuclease complex [Pelotomaculum
           thermopropionicum SI]
          Length = 627

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 218/621 (35%), Positives = 333/621 (53%), Gaps = 22/621 (3%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIR 59
           +  + +P  PGVY   D AGRV+YVGKA +L+ R++SY    + H  +I  MI +I+++ 
Sbjct: 11  LDLKALPAGPGVYLYRDAAGRVIYVGKAASLRNRVRSYFLPGSQHPPKIRSMIEKISDLE 70

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119
             VT TEVEAL+LE N+IK  +PR+N  L+DDKS+PYI +T     P +   R       
Sbjct: 71  VIVTDTEVEALILEQNLIKEHRPRYNAYLKDDKSYPYIKVTLGEDFPRVMLTRRHVKDGS 130

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGP+    AV +T++ L++ F  R+C       R RPCL + IKRCSGPC G +  EK
Sbjct: 131 RYFGPYTRAGAVHETLSLLRKIFPFRTCKQKEPPLRERPCLNYHIKRCSGPCCGLVDREK 190

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   ++E   FL G   +L   +A  M +A    ++E A   RD+L A+  +      I 
Sbjct: 191 YRAVINEVILFLEGRQEDLIRNLAARMEEAAANLEFEKAARLRDQLQAVREVVEKQKIIS 250

Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++    + A +   F   G+  G   F LK     + A +++ F++Q+YT 
Sbjct: 251 GGFEDQDVAAVAREGDEAWVAVFFIRGGKLIGREQFVLKGTEGLSGADVIAAFIKQYYTG 310

Query: 297 KPCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIE----QALINAHR 350
                  +L  E   EE +++E    ++ G +V + VP++GEK+K+++     AL+   +
Sbjct: 311 AEFVPAEILLPEEAGEEKAVIEKWLSEKRGARVLLKVPRRGEKKKLVDLAAKNALLALEQ 370

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           +  ++ +        L    ++  L   P R+E YD S+  G  +V  MVV  E      
Sbjct: 371 ARLEEAARRDDEAEALAGLARELGLEGPPGRVECYDVSNTQGAYSVASMVVFEEGRPAAG 430

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-EYSFPSWPDVVIL 469
           QYR+F +    V+  +D A ++ VL RRF++  +  E L        +  F   PD+VI+
Sbjct: 431 QYRRFKIRT--VEGPNDFASIQEVLRRRFARAREERELLAAGRIGSCQAKFHRLPDLVIV 488

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILY 528
           DGGKGQLSAA+  +++L    RI    +AK        E  F + + E + L    P L 
Sbjct: 489 DGGKGQLSAARQAMRELGFS-RIPAFGLAKEE------ELLFAESRPEPIALPADSPALR 541

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +QRLRDEAHRFA+  HR  R KA   S LDE+ GIG +R+R LL++FG+V  I +++PE
Sbjct: 542 LVQRLRDEAHRFALAYHRSLRGKAGLRSLLDEVEGIGEVRRRALLKAFGSVAEIEKATPE 601

Query: 588 TLASIEGISKKIACKIYNHFH 608
            LA+++G++KK A  +Y  FH
Sbjct: 602 QLAAVKGMNKKAARAVYEFFH 622


>gi|324999180|ref|ZP_08120292.1| Excinuclease ABC subunit C [Pseudonocardia sp. P1]
          Length = 665

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 187/647 (28%), Positives = 311/647 (48%), Gaps = 51/647 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA +L++R+ SY    +    R   M++  + + +TV 
Sbjct: 13  TIPESPGVYRFSDPRGRVIYVGKAKSLRQRLNSYFADLSGLHPRTRQMVTTASKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDK++P + +T   + P L+ +R        YFG
Sbjct: 73  GTEVEALQLEYNWIKEYDPRFNVRYRDDKTYPVLAVTMNEEYPRLHVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G++S++++
Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSAGVFKRHGQIGRPCLLGYIDKCSAPCVGKVSADEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V     FLSG    +  ++ + M +A+   ++E A   RD L AL         +  
Sbjct: 193 RDIVEGFSDFLSGRTDRMVRRLEQEMAEASENLEFERAARMRDDLGALRRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
                D  +   ++  A +Q      G+ RG   + +     +   Q++  F+ QFY + 
Sbjct: 253 DGTDADVVAFAEDELEAAVQIFHVRGGRVRGQRGWVIDKVEPTDTEQLVERFVSQFYGEQ 312

Query: 297 -----------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
                      +P P+ IL+     E + LE       G KV + V ++G+K+ + E   
Sbjct: 313 HALAGAADDAMQPVPKEILVPVLPAEGAALERWLSGLRGSKVSLRVAQRGDKKDLAETVA 372

Query: 346 INAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401
            NA  +  Q          +    L++  +   L   P RIE  D SH+ G + V  +VV
Sbjct: 373 RNAKEAFAQHKLRRAGDLTARSAALQEIQENLELDQAPLRIECIDVSHVQGTNVVASLVV 432

Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF---------- 451
             +    K++YR+F +     +   D A +  V+ RRF + +    +             
Sbjct: 433 FEDGLARKSEYRRFEIKDASDQG--DVASIAEVVRRRFKRFLAETADEPEPTAGSGEVAP 490

Query: 452 ---------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502
                        +   F   P+++++DG K Q+ AA   L +L + + + +  +AK  +
Sbjct: 491 GDTVRTGIDPETGRPKKFAYPPNLLVVDGAKPQVDAAAAELAELGITD-VAVCGLAKRLE 549

Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEIN 561
                E +     + ++L+     LY +QR+RDEAHRFAIT HR+RR +    S LD + 
Sbjct: 550 -----EVWLPDDDDPVILSRTSEGLYLLQRVRDEAHRFAITYHRQRRSQGMTASALDGVP 604

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           G+GP R++ LL+ FG+V+ +  +  E +A + G  ++ A  +    H
Sbjct: 605 GLGPARRQALLKHFGSVRKLRAAGVEEIAGVPGFGRRTAETVVAALH 651


>gi|312172020|emb|CBX80277.1| UvrABC system protein C [Erwinia amylovora ATCC BAA-2158]
          Length = 607

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 211/618 (34%), Positives = 339/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY   N  + +   ++  I  I  TV
Sbjct: 8   LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLASYFRGNLASRKTEALVGLIEQIDVTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++  H  P L  HR +   +G YF
Sbjct: 68  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSADH-HPRLASHRGAKHAKGEYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    ++ ++Y 
Sbjct: 127 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVTEDEYA 186

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             +   + FL+G +  +  ++   M QA+    +E A   RD++ A+  +          
Sbjct: 187 RQIDYVRLFLAGKDDQVLNQLVTRMEQASRDLRFEEAGRLRDQIQAVRRVTEKQFVSNQG 246

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + MD   + ++  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 247 DDMDVIGVSYDSGMACLHVLFIRQGKVLGSRSYFPKVPGGTELSEVVQTFVGQFYLQGSE 306

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +IL+     E  LL  S  +  G +V I    +G++ + ++ A  NA  +   +
Sbjct: 307 ARTLPADILIDFTLPEKELLAASLSELAGRRVTIQSKPRGDRARYLKLARTNAATALISR 366

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+   +    L +  +   LP I  R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 367 LAQHSTIHQRLAELAQTLKLPAIR-RMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 425

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL RR+S+ I+  +                PDV+++DGGKGQ
Sbjct: 426 NI--SGITPGDDYAAMDQVLRRRYSKAIEQSK---------------IPDVIVIDGGKGQ 468

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++   ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 469 LAQAKEVFAQLDVVWDKSHPLLLGVAKGSDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 528

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR +R K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 529 HIRDDSHNHAITGHRNKRAKVKNTSALETIEGIGPKRRQMLLKYMGGLQPLINASMEEIA 588

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI++   
Sbjct: 589 GVPGISHALAEKIFHALK 606


>gi|153803514|ref|ZP_01958100.1| excinuclease ABC, subunit C [Vibrio cholerae MZO-3]
 gi|124120950|gb|EAY39693.1| excinuclease ABC, subunit C [Vibrio cholerae MZO-3]
          Length = 610

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 209/619 (33%), Positives = 327/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TV
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E VH  + FL G ++ +   +   M QA+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 EIVHXLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296
              +D         +ACI       G+  G+ + F K  S+++  ++   FL Q+Y    
Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309

Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +  P  I+L+    EET  L+I+  +  G KV   V   G + + ++ A  NA  + T
Sbjct: 310 EARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K   ++  +  I  R+E +D SH MG S +   VV  + G +K +YR
Sbjct: 370 TKMNHKMTISQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M  VLERR+S+ +                    PD++ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++     +      II IAKG  R  G+E      G+   L    P L+ IQ
Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 592 KVPGISHALAENIYQALKQ 610


>gi|190149548|ref|YP_001968073.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|303249565|ref|ZP_07335772.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307251808|ref|ZP_07533710.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307262868|ref|ZP_07544492.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|229557975|sp|B3H0B9|UVRC_ACTP7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189914679|gb|ACE60931.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|302651639|gb|EFL81788.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306860715|gb|EFM92726.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306871773|gb|EFN03493.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 610

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 202/618 (32%), Positives = 329/618 (53%), Gaps = 33/618 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    ++YVGKA +L+KR+ SY  S   + +   +++ I++I  T+T 
Sbjct: 10  DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +P++N+LLRDDKS+PYIL+T KH+ P +   R S  + G YFGP
Sbjct: 70  SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y   
Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V+  + FL G +  + E + + M  A  + D+E+A   RD++ ++  +Q          +
Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+   F   G+  G  ++F K  + +   ++   F+ QFY      
Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLTELADTFVGQFYLQMNQH 308

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I++ +   E T+L  +   +            +G+K + +  A  NA  + T +
Sbjct: 309 RTIPNQIIIDQPLSEATALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  +   +           L  I  R+E +D SH MG   V   VV  ENG +K+ YR+F
Sbjct: 369 LKQDTHIRQRYDSLKALLNLAEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   L +R+ + ++ E+                PD++ +DGGKGQ
Sbjct: 428 NIEG--ITGGDDYAAMEQALLKRYGRHLEEEK---------------IPDIIFIDGGKGQ 470

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A      LNV   + +  +I +AKG +R AG+E   + K  + + L    P L+ IQ
Sbjct: 471 LNRALETFASLNVSWDKRKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + 
Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 590

Query: 591 SIEGISKKIACKIYNHFH 608
           S+ GISK++A  I++   
Sbjct: 591 SVPGISKQLAEVIFDTLQ 608


>gi|289665901|ref|ZP_06487482.1| excinuclease ABC subunit C [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 618

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/607 (37%), Positives = 340/607 (56%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T +   P +  HR    +QG YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVQGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V  V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC   +++  Y E V
Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I ++M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     + AC+    F  G+N GT +FF KT+ E +  +IL  F+ Q+Y +   P  
Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  E  L+E +      +KV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+  + +
Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++                   PD++++DGG GQL+ AQ  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDLLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VEN + ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGVEN-VLLLGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EG++  +A 
Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|303239029|ref|ZP_07325559.1| excinuclease ABC, C subunit [Acetivibrio cellulolyticus CD2]
 gi|302593367|gb|EFL63085.1| excinuclease ABC, C subunit [Acetivibrio cellulolyticus CD2]
          Length = 614

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 197/620 (31%), Positives = 337/620 (54%), Gaps = 24/620 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             +++P+ PGVY M DI G ++Y+GKA  L+ R++ Y  S +N T ++  M+ +I    +
Sbjct: 7   ELKKLPDKPGVYIMKDINGEIIYIGKAVVLKNRVRQYFQSLSNQTPKVQAMVPRIKEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ +P+FNI+L+DDK++PYI +T   + P +   R        
Sbjct: 67  IVTDTELEALILECNLIKKYRPKFNIMLKDDKTYPYIKVTMNEEFPRILMTRKVEKDGAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI+ L++ F ++SC     +   + RPCL + I +C GPC G++S +
Sbjct: 127 YFGPYTSGFAVKDTIDLLKKLFPIKSCNKIFPKDARKQRPCLNYYIYQCLGPCQGDVSKQ 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   +++   FLSG    + +++   M +A+   ++E A   RD++ +L HI      +
Sbjct: 187 EYRALMNDICSFLSGKQDEIIKRLETEMAKASENMEFEKAAAFRDKINSLRHIAQKQKVV 246

Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              M   D  +   +   +C+Q  F   G+  G   F  +   + T++++++ F++QFY+
Sbjct: 247 STTMEDQDVVAFSKDPTDSCVQVFFIRGGKLIGREHFIFEGAGDVTDSELMTSFIKQFYS 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  I+L E+ +E  ++E     +   KV I VP++GEK K++E    NA  +  Q
Sbjct: 307 STAYIPREIVLQEDIDEIDIIEKWLSNKREAKVHIKVPRKGEKLKLVEMVSQNALIALNQ 366

Query: 355 KLSTEISHQMILKD----FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                 + + + K+      +   L   P+RIE YD S+      V  MVV       K 
Sbjct: 367 FKDNIRNQESLAKEGISKLKELLELDGAPQRIEAYDISNTGSTEIVASMVVFEGGFPAKK 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YR+F +   +V  Q+D A M+ V+ RRF+   K +E+ +         F   PD+++ D
Sbjct: 427 EYRRFKVKSLNV--QNDYASMQEVIYRRFTHARKEKEDADGEA-----KFSRLPDLILAD 479

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG G +++   VL ++N+   I +  + K            V   +   L+    +L FI
Sbjct: 480 GGLGHVNSVLSVLGEMNIS--IPVAGMVKDANHRTRG---IVTTDKEFDLSKDLTLLRFI 534

Query: 531 QRLRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
             ++DEAHRFAI  +RK  +K+   S LDEI GIGP +K+ L++ FG++K I ++  + L
Sbjct: 535 TSIQDEAHRFAIEYNRKLVQKRYKGSELDEIEGIGPKKKKALIKHFGSLKNIKQAQVDDL 594

Query: 590 ASIEGISKKIACKIYNHFHK 609
           A++EGI+ ++A KI+ +F +
Sbjct: 595 AAVEGINLELAKKIFEYFRQ 614


>gi|15641227|ref|NP_230859.1| excinuclease ABC subunit C [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121729871|ref|ZP_01682299.1| excinuclease ABC, subunit C [Vibrio cholerae V52]
 gi|147674383|ref|YP_001216784.1| excinuclease ABC subunit C [Vibrio cholerae O395]
 gi|227081386|ref|YP_002809937.1| excinuclease ABC, subunit C [Vibrio cholerae M66-2]
 gi|254848339|ref|ZP_05237689.1| UvrABC system protein C [Vibrio cholerae MO10]
 gi|298498686|ref|ZP_07008493.1| excinuclease ABC, C subunit [Vibrio cholerae MAK 757]
 gi|21264129|sp|Q9KSP2|UVRC_VIBCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038129|sp|A5F1X2|UVRC_VIBC3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764951|sp|C3LLR0|UVRC_VIBCM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|9655694|gb|AAF94373.1| excinuclease ABC, subunit C [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121628380|gb|EAX60880.1| excinuclease ABC, subunit C [Vibrio cholerae V52]
 gi|146316266|gb|ABQ20805.1| excinuclease ABC, subunit C [Vibrio cholerae O395]
 gi|227009274|gb|ACP05486.1| excinuclease ABC, subunit C [Vibrio cholerae M66-2]
 gi|227013131|gb|ACP09341.1| excinuclease ABC, subunit C [Vibrio cholerae O395]
 gi|254844044|gb|EET22458.1| UvrABC system protein C [Vibrio cholerae MO10]
 gi|297543019|gb|EFH79069.1| excinuclease ABC, C subunit [Vibrio cholerae MAK 757]
          Length = 610

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 209/619 (33%), Positives = 327/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TV
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E VH  + FL G ++ +   +   M QA+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296
              +D         +ACI       G+  G+ + F K  S+++  ++   FL Q+Y    
Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309

Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +  P  I+L+    EET  L+I+  +  G KV   V   G + + ++ A  NA  + T
Sbjct: 310 EARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K   ++  +  I  R+E +D SH MG S +   VV  + G +K +YR
Sbjct: 370 TKMNHKMTISQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M  VLERR+S+ +                    PD++ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++     +      II IAKG  R  G+E      G+   L    P L+ IQ
Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 592 KVPGISHALAENIYQALKQ 610


>gi|289165978|ref|YP_003456116.1| excinuclease ABC subunit C [Legionella longbeachae NSW150]
 gi|288859151|emb|CBJ13080.1| putative excinuclease ABC subunit C [Legionella longbeachae NSW150]
          Length = 620

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 214/622 (34%), Positives = 344/622 (55%), Gaps = 34/622 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PG+Y+MLD +G VLYVGKA NL+KR+ SY +      +   +++QI +I  +VT 
Sbjct: 13  KLPNEPGIYRMLDESGAVLYVGKAANLKKRVTSYFNKQKTGIKTRSLVTQIASIEISVTR 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYFG 123
           +E EALLLE+N+IK LKP++N+LLRDDKS+PYI +++  + P +  +R       G +FG
Sbjct: 73  SETEALLLESNLIKTLKPKYNVLLRDDKSYPYIHLSNHPQFPRIESYRSKKKPVSGDFFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S   V++TI ++Q+ F +R+C DS F  R+RPCL +QIKRC+ PC   IS E Y   
Sbjct: 133 PYPSSGTVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPCVNYISPEDYKRS 192

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNR 241
           V +A +FL G    + +++A+ M++A  + ++E A + RD++  L  +Q       +   
Sbjct: 193 VQDAMRFLQGKCQLILDELAKRMDKAVSELNFEEAALLRDQIKCLRLVQEQQGILQLQGD 252

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292
            D  ++  N   AC+Q      GQ   + ++F        + +         I S F+  
Sbjct: 253 ADAIAIEVNPGFACVQCVTIRDGQILSSRSYFPSLPQYGLDEELSMETLWQQIFSAFIGF 312

Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           +Y D     P  I+ +   +    L+ +  +Q G   K+ V  +G K + ++ AL N   
Sbjct: 313 YYLDASEKIPALIITNHPVDNQKTLQEALSQQRGKSCKLQVNPRGVKLRWMDFALNNLRV 372

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           S  + ++   + +   ++  K   L    +R+E +D SH +G + V   VV  + G   N
Sbjct: 373 SVAEYITKHSTMRSRFQELEKFLGLKEPIERMECFDISHTLGEATVASCVVFEQEGPCPN 432

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR+FN+  + +   DD A M   + RRF +L++ +               S PDV+I+D
Sbjct: 433 LYRRFNI--DGITPGDDYAAMEQAITRRFKRLVETQ---------------SLPDVLIID 475

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529
           GGKGQ++ AQ  L  LN+ + I ++ IAKGP R AG EK   V     L L      L+ 
Sbjct: 476 GGKGQVAVAQKALLSLNISSVI-LLGIAKGPSRKAGWEKLILVHDSLELSLPDDSRALHL 534

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q +RDEAHRFAIT HRK+R KK   S L++I G+G  R++ LL  FG ++ ++++  E 
Sbjct: 535 LQHIRDEAHRFAITAHRKKRQKKQMDSVLEDIEGVGRKRRQALLHRFGGIRELAKAPLEE 594

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           +A ++GI++ +A +I+  FH  
Sbjct: 595 IAKVQGINEHLAKRIFQFFHGE 616


>gi|309811791|ref|ZP_07705565.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185]
 gi|308434212|gb|EFP58070.1| excinuclease ABC, C subunit [Dermacoccus sp. Ellin185]
          Length = 667

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 193/653 (29%), Positives = 308/653 (47%), Gaps = 46/653 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M++   ++ +
Sbjct: 10  KTGDIPTEPGVYRFRDRDGRVIYVGKAKNLRSRLSNYFQDLRLLHPRTRTMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+  TEVEAL LE   IK   PRFN+  RDDKS+PY+ +T    +P     R        
Sbjct: 70  TIVRTEVEALQLEYAWIKEFDPRFNVKYRDDKSYPYLAVTMSDAVPRAQVMRGRKRPGTR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGPF    A+  T++ L R F +R+C++ V+R      RPCLL  I +CS PC G+++ 
Sbjct: 130 YFGPFTHAWAIRDTLDQLMRVFPMRTCSNGVYRRAEASGRPCLLGYIDKCSAPCVGKVTK 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            ++ E   +   F++G +     +I R M  A    D+E A   RD L AL  +   +  
Sbjct: 190 AEHREIAQDFCDFMAGDSARFTREIERRMKAAAADLDFEQAARLRDDLGALEKVLQKSAV 249

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQ 292
           +++     D F +  +   A +Q      G+ RG   +     S+     A ++   L +
Sbjct: 250 VFDDATDADVFGVAEDDLEAAVQVFHVRGGRIRGQRGWVTDKGSDAGVNTADLVEAMLLE 309

Query: 293 FYTD----KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
            Y D       P  +L+     +   +     ++ G  V + VP++G+KR++      NA
Sbjct: 310 VYGDLQGRDDVPREVLVPSLPPDVETVSSWLRERRGSNVDVRVPQRGDKRELAATVAKNA 369

Query: 349 HRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
             +  +   +  S        L++  +   LP  P RIE +D SH+ G + VG MVV  +
Sbjct: 370 EHALARHKVSRASDLTARSQALEELQENLGLPEAPLRIECFDISHVQGTNVVGSMVVFED 429

Query: 405 NGFVKNQYRKFNLH----PNDVKTQDDCAMMRMVLERRFSQLIKNEENLN---------- 450
               K++YR+F ++     +     DD A M  VL RRF++L K   +L           
Sbjct: 430 GLPRKSEYRRFIVNGIEGEDGTLRNDDVAAMHEVLTRRFARLAKESADLAPATTGEIPAD 489

Query: 451 --------FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502
                        +   F   P ++++DGG+ Q+ AA   L  +  ++ I ++ +AK  +
Sbjct: 490 AATAGPSLRDENGRIKRFAYRPQLLVVDGGRPQVDAAARALADVGFDD-IPVVGLAKRLE 548

Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEIN 561
                E + V     ++L      LY +QR+RDEAHRFAIT HR+RR K    S LD I 
Sbjct: 549 -----EVWLVDDDYPVILPRTSEALYLLQRVRDEAHRFAITFHRERRSKSMTTSALDGIA 603

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           G+GP +++ LL  FG++K I  +  + L  ++GI   +A  I     +     
Sbjct: 604 GLGPAKQKALLAHFGSLKRIRAADADALCEVKGIGPTLAETIVRSLRQEQGEP 656


>gi|188534204|ref|YP_001908001.1| excinuclease ABC subunit C [Erwinia tasmaniensis Et1/99]
 gi|229558028|sp|B2VIA0|UVRC_ERWT9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|188029246|emb|CAO97123.1| UvrABC system protein C [Erwinia tasmaniensis Et1/99]
          Length = 610

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 212/618 (34%), Positives = 335/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY   N  + +   +++ I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRGNLGSRKTEALVALIEQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++  H  P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSADH-HPRLASHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    ++ E+Y 
Sbjct: 130 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVTEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             +   + FLSG +  +  ++   M QA+    +E A   RD++ A+  +          
Sbjct: 190 RQIDYVRLFLSGKDDQVLNQLVARMEQASGDLRFEEAGRLRDQIQAVRRVTEKQFVSNQG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + MD   +  +  +AC+   F   G+  G+ ++F K    +  A+++  F+ QFY     
Sbjct: 250 DDMDVIGVSFDSGMACLHVLFIRQGKVLGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +IL+     E  LL  S     G +V I    +G++ + ++ A  NA  +   +
Sbjct: 310 ARTLPSDILIDFTLPEKDLLAASLTALSGRRVSIQSKPRGDRARYLKLARTNAATALITR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+   +    L    +   LP I  R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LAQHSTIHQRLAALAQTLKLPAIG-RMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVIVIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++   ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LAQAKEVFAQLDVTWDKSHPLLLGVAKGTDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR +R K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAITGHRNKRAKVKNTSALETIEGIGPKRRQMLLKYMGGLQPLINASKEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI+    
Sbjct: 592 RVPGISTALAEKIFYALK 609


>gi|254292119|ref|ZP_04962892.1| excinuclease ABC, subunit C [Vibrio cholerae AM-19226]
 gi|150421954|gb|EDN13928.1| excinuclease ABC, subunit C [Vibrio cholerae AM-19226]
          Length = 610

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 209/619 (33%), Positives = 327/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TV
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E VH  + FL G ++ +   +   M QA+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296
              +D         +ACI       G+  G+ + F K  S+++  ++   FL Q+Y    
Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309

Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +  P  I+L+    EET  L+I+  +  G KV   V   G + + ++ A  NA  + T
Sbjct: 310 EARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K   ++  +  I  R+E +D SH MG S +   VV  + G +K +YR
Sbjct: 370 TKINHKMTISQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M  VLERR+S+ +                    PD++ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++     +      II IAKG  R  G+E      G+   L    P L+ IQ
Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 592 KVPGISHALAENIYQALKQ 610


>gi|253689044|ref|YP_003018234.1| excinuclease ABC, C subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755622|gb|ACT13698.1| excinuclease ABC, C subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 610

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 209/618 (33%), Positives = 331/618 (53%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY  S+  + +   ++  I +I  T+
Sbjct: 11  LKTVTSQPGVYRMYDAGDTVIYVGKAKDLKKRLASYFRSHVASRKTEALVKSIKHIDVTI 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPMIFLS-GDAHPRLAVHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF + +AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E Y 
Sbjct: 130 GPFPNGNAVRETLILLQKLFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +        + 
Sbjct: 190 QQVDYVRLFLSGKDQQVLNQLISRMEAASRDLNFEDAARIRDQIQAVRRVTEKQFVSGDG 249

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
             +D  S+  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 EDLDVISVAFDAGMACVYVLFIRQGKVLGSRSYFPKVPGGTELGEVVQTFVGQFYLQGSL 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     +  +L  S  +  G KV+I    +G++ + ++ A  NA  +   K
Sbjct: 310 SRTLPAEILLDFTLPDKDVLTESLTEVAGRKVQIQTKPRGDRARYLKLARTNAATALVTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP    R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTIHQRLAALASVLQLP-EIHRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL RR+ + +   +                PDV+++DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMAQVLRRRYGKALDESK---------------IPDVIVIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531
           L  AQ V   L V   +N+  ++ +AKG  R AG+E  F +  GE + L    P L+ IQ
Sbjct: 472 LGQAQAVFDSLQVSWDKNKPLLLGVAKGSDRKAGLETLFFEATGEGVALPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AI  HRK+R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHDHAIGGHRKKRAKVKNTSTLELIEGVGPKRRQTLLKYMGGLQPLMNASIEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
           ++ GIS  +A KI++   
Sbjct: 592 NVPGISHALAEKIFHALK 609


>gi|331086241|ref|ZP_08335323.1| UvrABC system protein C [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406400|gb|EGG85914.1| UvrABC system protein C [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 612

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 199/619 (32%), Positives = 329/619 (53%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  ++ N   +I  M++ I+   +
Sbjct: 7   ELKKLPSKPGVYLMHDEKDDIIYVGKAISLKNRVRQYFQASRNKGVKIEQMVTHISRFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDK++P+I +T +   P +   R+    +  
Sbjct: 67  IVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTIEEAYPRILFAREMKKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  L++ + +RSC  ++ +   + RPCL + IK+C  PC   IS E
Sbjct: 127 YFGPYTSAGAVKDTIELLRKLYHIRSCNRNLPKDIGKERPCLNYHIKQCYAPCQNYISQE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E V +A +FLSG    + +++   M  A+   ++E A+ +RD LA++  I       
Sbjct: 187 AYRESVQKAVEFLSGKYDPILKELQEKMECASEAMEFEKAMEYRDLLASVKQIAQKQKIT 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            +     D  ++      A +Q  F   G+  G   F++        A+IL+ F++QFY 
Sbjct: 247 NSDGEDKDILAVATEDRDAVVQVFFIRGGRLIGRDHFYMTIADREPKAEILTSFIKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  +++ +E E+  +LE    ++ G++V I VPK+GEK K++E A  NA      
Sbjct: 307 GTPYVPRELMIQQEIEDQEVLEEWLSERRGHRVHIRVPKKGEKEKLVELAKKNAQLVLST 366

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+  K   +  +  RIE +D S+  G ++VG M+V  +    +N
Sbjct: 367 DKERLKREEGRTIGAVKEIEKWLGIASVK-RIEAFDISNTNGFNSVGSMIVYEKGKPKRN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V+  DD A MR VL RRF   ++  E       K    F ++PD++++D
Sbjct: 426 DYRKFKIKG--VQGADDYASMREVLTRRFEHGMREREE-----GKDHGGFQTFPDLIMMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL +L +   I +  + K                E + ++        I
Sbjct: 479 GGKGQVNIALEVLDQLGI--VIPVCGMVKDDHHRTRG---LYYNNEEIGIDRNSEGFRLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HRK R +   +S LD+I GIGP R++ L++ F ++  I  ++ E L
Sbjct: 534 TRIQDEAHRFAIEFHRKLRSQGQVHSILDDIPGIGPARRKALMKHFISLDAIKAATIEEL 593

Query: 590 ASIEGISKKIACKIYNHFH 608
             I  +++K A ++YN FH
Sbjct: 594 KEIPSMNEKSANEVYNFFH 612


>gi|297578813|ref|ZP_06940741.1| excinuclease ABC [Vibrio cholerae RC385]
 gi|297536407|gb|EFH75240.1| excinuclease ABC [Vibrio cholerae RC385]
          Length = 610

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 208/619 (33%), Positives = 326/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TV
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E VH  + FL G ++ +   +   M QA+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296
              +D         +ACI       G+  G+ + F K  S+++  ++   FL Q+Y    
Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309

Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +  P  I+L+    EET  L+ +  +  G KV   V   G + + ++ A  NA  + T
Sbjct: 310 EARSIPARIILNRGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K   ++  +  I  R+E +D SH MG S +   VV  + G +K +YR
Sbjct: 370 TKINHKMTINQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M  VLERR+S+ +                    PD++ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++     +      II IAKG  R  G+E      G+   L    P L+ IQ
Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 592 KVPGISHALAENIYQALKQ 610


>gi|292487900|ref|YP_003530775.1| UvrABC system protein C [Erwinia amylovora CFBP1430]
 gi|292899121|ref|YP_003538490.1| UvrABC system protein C [Erwinia amylovora ATCC 49946]
 gi|291198969|emb|CBJ46080.1| UvrABC system protein C (excinuclease ABC subunit C) [Erwinia
           amylovora ATCC 49946]
 gi|291553322|emb|CBA20367.1| UvrABC system protein C [Erwinia amylovora CFBP1430]
          Length = 607

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 211/618 (34%), Positives = 339/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY   N  + +   ++  I  I  TV
Sbjct: 8   LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLASYFRGNLASRKTEALVGLIEQIDVTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++  H  P L  HR +   +G YF
Sbjct: 68  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSADH-HPRLASHRGAKHAKGEYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    ++ ++Y 
Sbjct: 127 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVTEDEYA 186

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             +   + FL+G +  +  ++   M QA+    +E A   RD++ A+  +          
Sbjct: 187 RQIDYVRLFLAGKDDQVLNQLVMRMEQASRDLRFEEAGRLRDQIQAVRRVTEKQFVSNQG 246

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + MD   + ++  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 247 DDMDVIGVSYDSGMACLHVLFIRQGKVLGSRSYFPKVPGGTELSEVVQTFVGQFYLQGSE 306

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +IL+     E  LL  S  +  G +V I    +G++ + ++ A  NA  +   +
Sbjct: 307 ARTLPADILIDFTLPEKELLAASLSELAGRRVTIQSKPRGDRARYLKLARTNAATALISR 366

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+   +    L +  +   LP I  R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 367 LAQHSTIHQRLAELAQTLKLPAIR-RMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 425

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL RR+S+ I+  +                PDV+++DGGKGQ
Sbjct: 426 NI--SGITPGDDYAAMDQVLRRRYSKAIEQSK---------------IPDVIVIDGGKGQ 468

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++   ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 469 LAQAKEVFAQLDVVWDKSHPLLLGVAKGSDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 528

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR +R K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 529 HIRDDSHNHAITGHRNKRAKVKNTSALETIEGIGPKRRQMLLKYMGGLQPLINASMEEIA 588

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI++   
Sbjct: 589 GVPGISHALAEKIFHALK 606


>gi|188991460|ref|YP_001903470.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris
           str. B100]
 gi|229557875|sp|B0RSI3|UVRC_XANCB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|167733220|emb|CAP51418.1| excinuclease ABC subunit C [Xanthomonas campestris pv. campestris]
          Length = 618

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/607 (37%), Positives = 340/607 (56%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  RLSTAPGVYRMYAADDSLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T +   P +  HR    + G YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVNGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +A V AV +T+N + + F LRSC DSVFR+R+RPCL +QI RCS PC   ++++ Y E V
Sbjct: 136 YAGVTAVRETLNLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVDLVAAQDYQEAV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I  +M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     + AC+    F  G+N GT +FF KT+ E +  +IL+ F+ Q+Y +   P  
Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSAEEILAAFVSQYYAEHAPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL     +  L+E +      +KV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDRAIPDAELIEAALSAAAEHKVALKWNVRGERAGYLLLASRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+  + +
Sbjct: 376 HARSEALREMLGLAEQVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++                   PDV+++DGG GQL+ AQ  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L +EN + ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGIEN-VLLVGVAKGEERRAGHEALILADGRELRPGAASPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EG++  +A 
Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|332670369|ref|YP_004453377.1| excinuclease ABC subunit C [Cellulomonas fimi ATCC 484]
 gi|332339407|gb|AEE45990.1| excinuclease ABC, C subunit [Cellulomonas fimi ATCC 484]
          Length = 698

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 193/642 (30%), Positives = 312/642 (48%), Gaps = 45/642 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++PE PGVY+  D  GRV+YVGKA +L+ R+ SY    +N   R   M++   ++ +TV 
Sbjct: 13  EIPESPGVYRFRDEHGRVIYVGKAKSLRPRLSSYFQDVHNLHPRTQQMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEV AL LE   IK   PRFN+  RDDKS+PY+ +T   + P +   R +      YFG
Sbjct: 73  PTEVAALALEYTWIKEFDPRFNVKYRDDKSYPYLAVTMSDEFPRVQVMRGAKRKGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F +R+C+  VF+    + RPCLL  I +CS PC G IS + +
Sbjct: 133 PYAHAWAIRETVDLLLRVFPVRTCSAGVFKRAHQQGRPCLLGYIDKCSAPCVGRISPDDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F++G       ++   M +A  + DYE A   RD +A L      N  +  
Sbjct: 193 HALAQDFCDFMAGDTARFTRRLTARMKEAAAELDYEQAARLRDDIATLEKATEKNAVVLK 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D F+L  +   A +Q      G+ RG   + ++   + T+A+++ + L+Q Y   
Sbjct: 253 DGTDADIFALAGDDLEAAVQVFHVRDGRIRGQRGWVVEKVEDVTDAELVEHLLQQVYGTD 312

Query: 295 ---TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                   P  +L+     +   ++       G +V++ VP++G+KR++      NA  +
Sbjct: 313 VDAGTASVPREVLVPVLPPDVEQVQDWLAGMRGARVQVRVPQRGDKRELAATVHRNAEHA 372

Query: 352 HTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +       +    L++  +   LP  P RIE YD SH  G      MVV  +   
Sbjct: 373 LLLHRTRRAGDLTTRSQALREIQEALDLPSAPLRIECYDVSHNQGTFQSASMVVFEDGLA 432

Query: 408 VKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKN--------------------E 446
            K +YR FNL   D +  +DD A M  V+ RRF + +                       
Sbjct: 433 RKGEYRLFNLRGTDGEGARDDTAAMHEVITRRFRRYLAERSAAGDVELGLGDDDEDAPRR 492

Query: 447 ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506
                    +   F   P++V++DGG+ Q++AA   L +L +++ + +  +AK  +    
Sbjct: 493 SGPVDETTGKPQRFAYPPNLVVVDGGQPQVAAAAAALAELGIDD-VALCGLAKRLE---- 547

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565
            E +   +   ++L      LY +QRLRDEAHRFAI+ HR+RR K    S LD++ G+GP
Sbjct: 548 -EVWLPGEDYPVILQRSSEGLYLLQRLRDEAHRFAISAHRRRRSKGMTASVLDDVPGLGP 606

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            R+  LL+ FG+VK +  +S   +AS++G+  + A  +    
Sbjct: 607 ARRAALLRHFGSVKRLRAASVAEIASVQGMGDRTAAAVVAAL 648


>gi|162139923|ref|YP_340422.2| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis TAC125]
 gi|119367818|sp|Q3IIM0|UVRC_PSEHT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 607

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 219/614 (35%), Positives = 331/614 (53%), Gaps = 27/614 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY MLD   +V+YVGKA +L+KR+ SY  SN    +   ++S I N+  T+
Sbjct: 10  LKTLSSEPGVYCMLDSDNQVIYVGKAKHLKKRVSSYFRSNITDSKTRVLVSNICNVEVTL 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+ +PR+NILLRDDKS+PYIL+T+ HK P L  HR S  ++G YF
Sbjct: 70  TNTETEALLLENNLIKKYQPRYNILLRDDKSYPYILLTN-HKHPRLAFHRGSRKVKGEYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S  AV +++  +Q+ F +R C D  +R R+RPCL +Q+KRCS PC  ++S E Y E
Sbjct: 129 GPFPSAGAVSESLRLMQKIFPIRQCEDVYYRARSRPCLQYQLKRCSAPCVNKVSDEDYTE 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V   +KFL+G +H +   + + M  A+ + ++E A   RD++  L  +Q       N  
Sbjct: 189 QVDYVRKFLTGKSHEVIADLIKKMEAASQQLNFELAAKVRDQIMLLRKMQEQQSISGNFA 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            MD     H   L  I        +  G+ T+F K   +S+  +IL+ FL Q+Y      
Sbjct: 249 EMDVVGFAHLNGLNGIHLLMIRDHKVLGSKTYFPKVPKDSSEQEILTSFLGQYYLAPGAT 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
               + I+L  E +E+ +L  +  +    KV + V  +GE+ + ++ A  NA  S T K 
Sbjct: 309 GRIAKEIILPFEIQESDVLGQALTQISERKVTLKVVTRGERAQYLQLANKNALNSITVKQ 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           ST+ S             L  I  R+E +D SH MG + V   VV    G    +YR++N
Sbjct: 369 STQDSINKRYAQLKATLRLDDIT-RMECFDISHTMGENTVASCVVFDSQGPNTKEYRRYN 427

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M   L +R+++L+  ++                PDV+ +DGGKGQL
Sbjct: 428 V--TGITGGDDYAAMEFALNKRYNKLVDEDK---------------IPDVIFIDGGKGQL 470

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRD 535
             A+             ++ +AKG  R  G+E   +  G   + ++   P L+ IQ +RD
Sbjct: 471 GRAEQYFATWPHAKMPLLVGVAKGTSRKPGLETLLIDGGRKTIPMDSDAPALHLIQHIRD 530

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+HRFAI  HR +R+K    S L+EING+G  R++ LL+  G ++ +  ++ E L  + G
Sbjct: 531 ESHRFAIAGHRNKRQKQRTQSLLEEINGVGAKRRQTLLKYLGGMQGVKAANIEQLKKVPG 590

Query: 595 ISKKIACKIYNHFH 608
           IS  +A KI+NH H
Sbjct: 591 ISPDMADKIFNHLH 604


>gi|323142231|ref|ZP_08077065.1| excinuclease ABC, C subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322413294|gb|EFY04179.1| excinuclease ABC, C subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 615

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 198/620 (31%), Positives = 325/620 (52%), Gaps = 41/620 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTC 64
           +PE PGVY M D +G+V+YVGKA  L+ R++SY  +  +HT ++  M+++I  I   VT 
Sbjct: 19  LPEKPGVYLMHDASGKVIYVGKAVVLKNRVRSYFRNLASHTPKVKAMVAKIAEIETIVTS 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +EVEALLLE N+IK+ +PR+NI L+DDK++PY+ +T +   P LY  R        Y+GP
Sbjct: 79  SEVEALLLECNLIKKYRPRYNISLKDDKTYPYLKVTMQEDFPRLYVTRRQLRDGARYYGP 138

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +A   A+  T+  L+  F LR+C      +  RPCL + IKRC  PC G IS   Y + +
Sbjct: 139 YADAGAMHATVKLLRSMFPLRTCRKM---NPDRPCLNYHIKRCLAPCAGYISKADYHKMI 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR--- 241
                 L G    L+  + + M +A     +E A   RD+L A++ +     ++ N    
Sbjct: 196 KSICMVLDGRTTELERDLKQQMQEAADNYAFEEAARLRDQLQAVARLNEAQKAVTNNGGD 255

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300
           MD F L  +    C+Q  F   G+  G   FFL  D   T  ++++ F++Q+Y +    P
Sbjct: 256 MDIFGLGQDMTGLCVQLFFVRKGKLIGRDNFFLP-DGGDTPQEVMTAFVKQYYNEATFIP 314

Query: 301 ENILLSEEAEETS--LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
           + ++L    EE    L+E     +   +V++ +P++G K+ +++ A  NA +   ++L  
Sbjct: 315 KEVVLPYLPEEDEKQLIETWLADKAQRRVELLLPQRGVKKDLLKLANENAVKLLNERLRK 374

Query: 359 ----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                 +     ++  +   L H  +R++ +D SH  G   V  MVV       K  YR+
Sbjct: 375 GSLSLKNDLQAAEELQQALGLEHPLERMDCFDISHTQGSETVASMVVFRNGTSSKKDYRR 434

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +   +    DD   M+ V+ RR+                        P +V++DGGKG
Sbjct: 435 YKIVSAEG-KPDDFKSMQEVVYRRYRDYED------------------LPSLVVIDGGKG 475

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QLS+A  V++ L +++ + ++ +AK  +     E F   + E+++L+     L+ IQR+R
Sbjct: 476 QLSSALEVIRGLGLDD-LPVVGLAKREE-----EIFKPHQSESIMLDREGAALHLIQRIR 529

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HRK R K+   S LD + GIGP R++ L ++F T+  +  +S E LA++E
Sbjct: 530 DEAHRFAITYHRKLRGKRNLVSVLDHVEGIGPKRRQELWKAFKTLDAMRAASVEELAAVE 589

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G++   A  +Y+ F  +   
Sbjct: 590 GMNHAAAQTLYDFFRLDLPE 609


>gi|166712268|ref|ZP_02243475.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 618

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 234/607 (38%), Positives = 343/607 (56%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T +H  P +  HR    +QG YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLTREH-WPRIALHRGPRAVQGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V  V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC G +++  Y E V
Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVGLVAAPDYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I ++M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     + AC+    F  G+N GT +FF KT+ E +  +IL  F+ Q+Y +   P  
Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  ET L+E +      +KV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDREIPETELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+  + +
Sbjct: 376 HARSEALREMLGLAEPFKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++                   PDV+++DGG GQL+ AQ  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VEN + ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGVEN-VLLVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EG++  +A 
Sbjct: 539 TGHRGRRQKARMSSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|307249491|ref|ZP_07531479.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858484|gb|EFM90552.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 610

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 202/618 (32%), Positives = 330/618 (53%), Gaps = 33/618 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    ++YVGKA +L+KR+ SY  S   + +   +++ I++I  T+T 
Sbjct: 10  DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +P++N+LLRDDKS+PYIL+T KH+ P +   R S  + G YFGP
Sbjct: 70  SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y   
Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V+  + FL G +  + E + + M  A  + D+E+A   RD++ ++  +Q          +
Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+   F   G+  G  ++F K  + +  +++   F+ QFY      
Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I++ +   E T+L  +   +            +G+K + +  A  NA  + T +
Sbjct: 309 RTIPNQIIIDQSLSEVTALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  +   +           L  I  R+E +D SH MG   V   VV  ENG +K+ YR+F
Sbjct: 369 LKQDTHIRQRYDSLKTLLNLAEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   L +R+ + ++ E+                PD++ +DGGKGQ
Sbjct: 428 NIEG--ITGGDDYAAMEQALLKRYGRHLEEEK---------------IPDIIFIDGGKGQ 470

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A      LNV   + +  +I +AKG +R AG+E   + K  + + L    P L+ IQ
Sbjct: 471 LNRALETFASLNVSWDKRKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + 
Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 590

Query: 591 SIEGISKKIACKIYNHFH 608
           S+ GISK++A  I++   
Sbjct: 591 SVPGISKQLAEVIFDTLQ 608


>gi|84496559|ref|ZP_00995413.1| excinuclease ABC subunit C [Janibacter sp. HTCC2649]
 gi|84383327|gb|EAP99208.1| excinuclease ABC subunit C [Janibacter sp. HTCC2649]
          Length = 655

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 193/634 (30%), Positives = 317/634 (50%), Gaps = 30/634 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  GRV+YVGKA +L+ R+ SY         R   M+    ++ +T  
Sbjct: 13  EIPTDPGVYRFRDKDGRVIYVGKAKSLRPRLSSYFQDVGMLHPRTASMVMAGASVEWTTV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P     R +      YFG
Sbjct: 73  LTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLGEEYPRAQVMRGAKRKGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++   R F +R+C+  VF+      RPCLL  I +CS PC G + ++ +
Sbjct: 133 PYAHAWAIRETLDQALRVFPIRTCSSGVFKRASQVGRPCLLGYIDKCSAPCVGRVDADAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            +   E   F++G +    +++ R M  A+ + ++E+A   RD + AL  +   +  ++ 
Sbjct: 193 RQIAEEFCDFMAGESTKFMKRLERQMRDASDELEFETAARLRDDIGALQRVLEKSAVVFG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D F+L  ++    +Q      G+ RG   +  +     T  +++ + L+Q Y   
Sbjct: 253 DGTDADVFALADDELEVAVQVFHVRGGRIRGQRGWVAE-KEFETVPEVVGHLLQQLYGGE 311

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             +  P  +L+    ++   +        G +V + VP++G+K+ ++E    NA +S  +
Sbjct: 312 EGESVPREVLVPVLPDDADSMSEWLSGLRGSRVDLRVPQRGDKKTLMETVERNATQSLAR 371

Query: 355 KLS----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                     +    L+   +  AL   P RIE YD SH+ G   VG MVV  +    K 
Sbjct: 372 HKVARAGDLTARSQALQQLQEFLALDESPLRIECYDISHVQGTQVVGSMVVFEDGLARKG 431

Query: 411 QYRKFNLHPNDVK-----TQDDCAMMRMVLERRFSQLIKNEENLNFHPKK--QEYSFPSW 463
           +YR+F +   +       T DD A M  VL RRF + +K+ +      ++  +   F   
Sbjct: 432 EYRRFIVRGANDDEGAAVTIDDTAAMHEVLTRRFRRYLKDRDEPQGRDEETGRPTRFAYP 491

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           P +V++DGG  Q++AA   ++ L + + + ++ +AK  +     E +   +   +VL   
Sbjct: 492 PQLVVVDGGLPQVNAAARAIEDLGIVD-VAVVGLAKRLE-----EVWVPGQDFPIVLPRT 545

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMIS 582
              LY +QRLRDEAHRFAIT HR+RR KA   S LD I G+G ++++ LL+ FG+VK I 
Sbjct: 546 SEGLYLLQRLRDEAHRFAITFHRQRRSKAMTNSALDGIPGLGDVKQKSLLRHFGSVKRIR 605

Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
            +S + L  + GI  ++A  I           PT
Sbjct: 606 AASLDELVEVAGIGPRLAETIQREL-TGAPAEPT 638


>gi|289669008|ref|ZP_06490083.1| excinuclease ABC subunit C [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 618

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/607 (37%), Positives = 338/607 (55%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T +   P +  HR    +QG YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVQGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V  V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC   +++  Y E V
Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I ++M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     + AC+    F  G+N GT +FF KT+ E +  +IL  F+ Q+Y +   P  
Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  E  L+E +      +KV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+     
Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNISGT-- 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++                   PD++++DGG GQL+ AQ  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDLLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VEN + ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGVEN-VLLLGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EG++  +A 
Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|310767246|gb|ADP12196.1| excinuclease ABC subunit C [Erwinia sp. Ejp617]
          Length = 610

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 214/618 (34%), Positives = 341/618 (55%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY   N  + +   +++ I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDSAGTVIYVGKAKDLKKRLASYFRGNLASRKTEALVALIEQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++  H  P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSADH-HPRLASHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    ++ E+Y 
Sbjct: 130 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVTEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             +   + FLSG +  +  ++   M QA+ +  +E A   RD++ A+  +          
Sbjct: 190 RQIDYVRLFLSGKDDQVLNQLVTRMEQASRELRFEEAGRLRDQIQAVRRVTEKQFVSNQG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + MD   +  +  +AC+   F   G+  G+ ++F K    +  A+++  F+ QFY     
Sbjct: 250 DDMDVIGVSFDSGMACLHVLFIRQGKVLGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +IL+     E  LL  S  +  G +V I    +G++ + ++ A  NA  + T +
Sbjct: 310 ARTLPADILIDFTLPEKELLAASLTELAGRRVTIQSKPRGDRARYLKLARTNAATALTSR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+   +    L +  +   LP I  R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LAQHSTIHQRLAELAQTLKLPTIR-RMECFDISHTMGEQTVASCVVFDTNGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMNQVLRRRYGKAIEQSK---------------IPDVIVIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++   ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LAQAKEVFAQLDVAWDKSHPLLLGVAKGSDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR +R K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAITGHRNKRAKVKNTSALETIEGIGPKRRQMLLKYMGGLQPLINASMEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI++   
Sbjct: 592 GVPGISHALAEKIFHALK 609


>gi|270159194|ref|ZP_06187850.1| excinuclease ABC subunit C [Legionella longbeachae D-4968]
 gi|269987533|gb|EEZ93788.1| excinuclease ABC subunit C [Legionella longbeachae D-4968]
          Length = 631

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 214/622 (34%), Positives = 344/622 (55%), Gaps = 34/622 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PG+Y+MLD +G VLYVGKA NL+KR+ SY +      +   +++QI +I  +VT 
Sbjct: 24  KLPNEPGIYRMLDESGAVLYVGKAANLKKRVTSYFNKQKTGIKTRSLVTQIASIEISVTR 83

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYFG 123
           +E EALLLE+N+IK LKP++N+LLRDDKS+PYI +++  + P +  +R       G +FG
Sbjct: 84  SETEALLLESNLIKTLKPKYNVLLRDDKSYPYIHLSNHPQFPRIESYRSKKKPVSGDFFG 143

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S   V++TI ++Q+ F +R+C DS F  R+RPCL +QIKRC+ PC   IS E Y   
Sbjct: 144 PYPSSGTVKETIVTIQKVFKIRNCRDSYFNARSRPCLQYQIKRCTAPCVNYISPEDYKRS 203

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNR 241
           V +A +FL G    + +++A+ M++A  + ++E A + RD++  L  +Q       +   
Sbjct: 204 VQDAMRFLQGKCQLILDELAKRMDKAVSELNFEEAALLRDQIKCLRLVQEQQGILQLQGD 263

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQ 292
            D  ++  N   AC+Q      GQ   + ++F        + +         I S F+  
Sbjct: 264 ADAIAIEVNPGFACVQCVTIRDGQILSSRSYFPSLPQYGLDEELSMETLWQQIFSAFIGF 323

Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           +Y D     P  I+ +   +    L+ +  +Q G   K+ V  +G K + ++ AL N   
Sbjct: 324 YYLDASEKIPALIITNHPVDNQKTLQEALSQQRGKSCKLQVNPRGVKLRWMDFALNNLRV 383

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           S  + ++   + +   ++  K   L    +R+E +D SH +G + V   VV  + G   N
Sbjct: 384 SVAEYITKHSTMRSRFQELEKFLGLKEPIERMECFDISHTLGEATVASCVVFEQEGPCPN 443

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR+FN+  + +   DD A M   + RRF +L++ +               S PDV+I+D
Sbjct: 444 LYRRFNI--DGITPGDDYAAMEQAITRRFKRLVETQ---------------SLPDVLIID 486

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYF 529
           GGKGQ++ AQ  L  LN+ + I ++ IAKGP R AG EK   V     L L      L+ 
Sbjct: 487 GGKGQVAVAQKALLSLNISSVI-LLGIAKGPSRKAGWEKLILVHDSLELSLPDDSRALHL 545

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q +RDEAHRFAIT HRK+R KK   S L++I G+G  R++ LL  FG ++ ++++  E 
Sbjct: 546 LQHIRDEAHRFAITAHRKKRQKKQMDSVLEDIEGVGRKRRQALLHRFGGIRELAKAPLEE 605

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           +A ++GI++ +A +I+  FH  
Sbjct: 606 IAKVQGINEHLAKRIFQFFHGE 627


>gi|260772979|ref|ZP_05881895.1| excinuclease ABC subunit C [Vibrio metschnikovii CIP 69.14]
 gi|260612118|gb|EEX37321.1| excinuclease ABC subunit C [Vibrio metschnikovii CIP 69.14]
          Length = 609

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 210/619 (33%), Positives = 332/619 (53%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY  S   + +   ++S IN I  TV
Sbjct: 10  LKNVTHQPGVYRMYNTEAEVIYVGKAKDLKKRLSSYFRSKVDSEKTRALVSHINKIDVTV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR +   +G YF
Sbjct: 70  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-AHKHPRLSAHRGAKKRRGEYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +R RPCL++QI RC+ PC    I+ E Y 
Sbjct: 129 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRVRPCLMYQIGRCAAPCVKSLINDEDYA 188

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E V+  + FL G +  + E +   M QA+    +E A   RD++ A+  +Q       + 
Sbjct: 189 ELVNCVRLFLQGKDKQVLEMLIGKMEQASQALRFEDAAKFRDQIQAIRRVQEQQFVAEDS 248

Query: 242 MDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            D          K LACI       G+  G+ +FF K  + + + ++   FL Q+Y +  
Sbjct: 249 QDDLDVLGFAQEKGLACIHILMIRQGKVLGSRSFFPKIPANTESQEVFESFLSQYYLNHT 308

Query: 299 ----CPENILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                P  I+L++   +ET  L+++  +  G+ V   V   G + + ++ +  NA  + T
Sbjct: 309 DSRVVPSRIILNQGLLKETKPLQLALRELAGHNVHFHVSPTGTRGQYLKLSNTNALSAMT 368

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            KL+ +++ Q  + +  +   + +I  R+E +D SH MG S V   VV  + G +K +YR
Sbjct: 369 SKLNHKMTIQQRINELQRVLGIENIA-RMECFDISHTMGESTVASCVVFNQEGPIKAEYR 427

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           +FN+    +   DD A M   LERR+++ +  ++                PDV+ +DGGK
Sbjct: 428 RFNI--TGITGGDDYAAMAQALERRYAKQLDVDK---------------IPDVIFIDGGK 470

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++ +   +   R  +I IAKG  R  G+E     +G+   L    P L+ IQ
Sbjct: 471 GQLNRALQIITQCWQDWPKRPQLIGIAKGITRKPGLETLITTEGDEFHLPSDAPALHLIQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HR +R K    S L+ I G+GP R++ LL+  G ++ I R++ E +A
Sbjct: 531 HIRDESHNHAITGHRAKRGKTRRTSTLEGIEGVGPKRRQALLKYMGGLQEIKRATVEEIA 590

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY     
Sbjct: 591 KVPGISHSLAEIIYQALKP 609


>gi|297618023|ref|YP_003703182.1| excinuclease ABC, C subunit [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145860|gb|ADI02617.1| excinuclease ABC, C subunit [Syntrophothermus lipocalidus DSM
           12680]
          Length = 598

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 206/615 (33%), Positives = 323/615 (52%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+ PGVY   D  G+V+YVGKA  L+ R++SY  S +    ++  M++++ +  + VT
Sbjct: 7   KVPQKPGVYLFKDERGQVIYVGKAKALRNRLRSYFQSPSQLLPKVRAMMAKVRDFDYVVT 66

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVEAL+LE+N+IK  +PR+NI+LRDDKS+PY+ +T   + P L   R+       YFG
Sbjct: 67  ANEVEALILESNLIKSYQPRYNIMLRDDKSYPYLKVTMAEEYPRLVIAREKKDGVSRYFG 126

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P++ V A+ +TI  L   F +R+C     R   RPCL   I RC  PCTGEIS E+YM  
Sbjct: 127 PYSDVGALRQTIRLLTGIFPVRTC--RTLRLGRRPCLKRDIGRCLAPCTGEISREEYMRV 184

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V +  +FL G +  L   +   M +A  K ++E A   RD + A+  +            
Sbjct: 185 VADVCRFLEGDHAGLLAGLEEEMREAADKLEFEKAARLRDTIRAVEKVSEKQKVVLENPW 244

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299
            +D  +                 G+  G  TF L+T       +I++YF++++Y++ P  
Sbjct: 245 ELDVMAFAPVNREMLGLVFKVRAGRVVGKETFELRTVMGEGLKEIVAYFIQRYYSESPDL 304

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  IL+  E E   +LE    +    +V I VP +G KR+++  A  NA     +K    
Sbjct: 305 PREILIPVEPEGREVLETWLSEMKKARVTIKVPHRGTKRQLMVMAEENARLLAEEKARAG 364

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                +L    +  +L  +P RIE YD SH+ G   VG M V+      K+ YR+FNL  
Sbjct: 365 EG-HGVLTALAQVLSLETVPFRIECYDVSHLSGEGTVGSMAVLTAGKKDKSAYRRFNLGK 423

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           N     DD   +  +L RR ++  + +            +F   PD+V++DGG GQ++ A
Sbjct: 424 NI---NDDYQALSDILRRRLTRGQEGD-----------PAFLPMPDLVVIDGGLGQVNVA 469

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           Q V++++ +   + ++ +AK  +     E +F  + E L L  R   L+ +Q LRDEAHR
Sbjct: 470 QRVMQEMGIT--VPVVGLAKKNE-----EIYFPGQREPLRLPRRHQALHLLQSLRDEAHR 522

Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA+T  RKRR +    S LD I GIG  RK  LLQ+FG+V  I  ++PE L+ ++G+++ 
Sbjct: 523 FAVTYQRKRRSRNITQSELDRIAGIGEKRKLALLQAFGSVDAIKNATPEELSRVKGMNRT 582

Query: 599 IACKIYNHFHKNTSH 613
           +A K++  F+     
Sbjct: 583 VAEKVFAFFNPKGDG 597


>gi|78065727|ref|YP_368496.1| excinuclease ABC subunit C [Burkholderia sp. 383]
 gi|90111060|sp|Q39I64|UVRC_BURS3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|77966472|gb|ABB07852.1| Excinuclease ABC subunit C [Burkholderia sp. 383]
          Length = 677

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 216/664 (32%), Positives = 330/664 (49%), Gaps = 65/664 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D AG VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDTAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R S   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISDEDYAIDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS-----------EST--------- 281
            D  ++       C+       G++ G   +F                + +         
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGIGDESELAEAVDAP 317

Query: 282 -----------------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEIS 318
                                   A++L  F+ Q Y     P  +++S       LLE+ 
Sbjct: 318 ADAMPDLPAEEPGRARSDAAASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLEL- 376

Query: 319 FFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK---FAL 375
             +Q G+KV +    QG++R  +  A  NA  +  + LS + S Q   +   +       
Sbjct: 377 LSEQAGHKVSLVRQPQGQRRAWLSMAEQNAQIALMRLLSEQGSQQARTRALAETLSYECD 436

Query: 376 PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435
                RIE +D SH MG +     VV   +     +YR++N+    +   DD A MR VL
Sbjct: 437 DLTTLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVL 494

Query: 436 ERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
            RR+ ++++         +   ++    +Q  +    P++V++DGGKGQ+  A+ V  +L
Sbjct: 495 TRRYEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQVFTEL 554

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTH 545
            ++  + ++ +AKG  R  G+E      G   L L      L  + ++RDEAHRFAIT  
Sbjct: 555 GLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMVVAQIRDEAHRFAITGM 613

Query: 546 RKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R KA   S L+E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS  +A +IY
Sbjct: 614 RAKRAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVEGISHALAEQIY 673

Query: 605 NHFH 608
              H
Sbjct: 674 KQLH 677


>gi|119367819|sp|Q1Q8B0|UVRC_PSYCK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 614

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 199/614 (32%), Positives = 314/614 (51%), Gaps = 29/614 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+ML   G +LYVGKA +L+ R+ SY        +   ++++I+NI   +T
Sbjct: 22  QRLPNLPGVYKMLGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVARIHNIETIIT 81

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSYF 122
            +E EALLLE N+IK  +P +N+LLRDDKS+ Y+ I+     P L   R   +  +G +F
Sbjct: 82  RSETEALLLEQNLIKEYRPPYNVLLRDDKSYLYVFISADKPYPRLAYGRGKGNHQKGRFF 141

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S  A ++T+  +Q+ F +R C ++ F+ R RPCL +QIKRC  PC G +S E+Y E
Sbjct: 142 GPFPSAHAAKETLVLMQKMFQMRQCTNTFFKQRKRPCLEYQIKRCRAPCVGLVSPEEYSE 201

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            V+   +FL G + ++   +   M  +  + D+E A+ +RD+L+ L  +Q          
Sbjct: 202 DVNNTIRFLKGDSSDIHTALIEKMEASAEELDFEKAVFYRDQLSMLREVQAKQAVYTVQG 261

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298
             D  ++     + C+       G+  G   +F   DS    A  LS F+  FY      
Sbjct: 262 EADVIAIASQGGMTCVNVLTVRGGRVLGGKNYFPDVDSSEPLADNLSAFITSFYFQVTDD 321

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I+LS+E  +   +  +    +G KV I    +  + + ++ A +N + +   KL  
Sbjct: 322 LPAEIILSDELPDQLAVSEALATHFGSKVVIKTSVREHRAEWLDLAKLNTNNALKTKLGD 381

Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
            +                      RIE +D SH MG + +G  VV  + G  +  YR++ 
Sbjct: 382 YLELHARFGALKDVLTEVTDRTIDRIECFDISHTMGEATIGSCVVFDQGGSRRRDYRQYA 441

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +H   +   DD A M+ VL RR+ +                      PD++++DGGKGQL
Sbjct: 442 IHD--IVGGDDYAAMKQVLTRRYKK-------------------QPLPDLLLIDGGKGQL 480

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
             A+ VL +L +     +IS+AKG  R AG+E       E L L M    L+ +  +RDE
Sbjct: 481 GIAKEVLTELGILGDTLLISVAKGEGRKAGLEVLHFIDHEPLDLPMDSKALHLLMHIRDE 540

Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT HRK+R K+ + S L+ I G+G  R+R LL  FG ++ +  +S + LA ++GI
Sbjct: 541 AHRFAITAHRKKRDKRRSSSVLEVIPGLGEKRRRDLLNHFGGMQQLLGASQQELAGVQGI 600

Query: 596 SKKIACKIYNHFHK 609
              +A  +Y   H+
Sbjct: 601 GPVLAKTVYKVLHE 614


>gi|302669467|ref|YP_003829427.1| excinuclease ABC C subunit UvrC [Butyrivibrio proteoclasticus B316]
 gi|302393940|gb|ADL32845.1| excinuclease ABC C subunit UvrC [Butyrivibrio proteoclasticus B316]
          Length = 623

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 202/622 (32%), Positives = 316/622 (50%), Gaps = 21/622 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA NL  R++SY  +N     +I  M+  I    +
Sbjct: 9   ELKKLPNKPGVYIMRDENDTIMYVGKAINLHNRVRSYFRANIGRGPQIDQMVKLIARFEY 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK   PR+N LL+DDK++PYI +T     P +   R     +  
Sbjct: 69  IVTDSELEALVLENNLIKENSPRYNTLLKDDKTYPYIKVTVSEDYPRVLFSRLMKKDKSR 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGPF S  AV+ TI+ + + + LR+C   + R     RPCL + +K+C GPCTG IS E
Sbjct: 129 YFGPFTSAAAVKDTIDLINKIYGLRTCNRVLPRDIGLERPCLNYHMKQCCGPCTGAISKE 188

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYE---SAIIHRDRLAALSHIQNHN 235
           +Y + +  A  FL+G    + + +   M  A+ + D+E           +  ++  Q   
Sbjct: 189 EYRKRIDGALDFLNGNYTVIIKDLQDKMEAASEELDFENAAKYRDLLSSVKVVAQKQKMT 248

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           DS     D  ++  +   A +Q  F   G+  G   F++   SE+  A+IL  F++QFY 
Sbjct: 249 DSSMEDKDIVAIASDDKDAVVQVFFVRDGRLIGREHFYMTHVSENPQAEILLNFVKQFYA 308

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  ++L E  E+  ++E    ++ G +V ITVP++G+K K++E A  NA      
Sbjct: 309 GTPFIPRELMLPEPIEDMEIIEKWLTQRKGSRVYITVPERGQKEKLMELAAQNAELVLSK 368

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      +     R+E YD S+I G + VG MVV  +    K+
Sbjct: 369 DKERIKREEGRTIGAVKEIENLLGIK-GLNRMEAYDISNISGFANVGSMVVYEKGKPKKS 427

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVIL 469
            YRKF +    V   DD A M  VL RR    I+   +L       Q  SF  +PD++++
Sbjct: 428 DYRKFRIKS--VAGPDDYACMHEVLTRRLLHGIEERHDLEVRDIDAQYGSFTKFPDLILM 485

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++    VL +L +   I +  + K                  L ++ R      
Sbjct: 486 DGGRGQVNICLQVLDELGIH--IPVCGMVKDDNHRTRG---LYYNNVELPIDTRSEGFKL 540

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DEAHRFAI  HR  R K+   S LD+I G+GP R++ L+++F +++ I  +S E 
Sbjct: 541 ITRIQDEAHRFAIEYHRSLRSKSQVKSSLDDIPGVGPSRRKALMRNFKSIEDIRNASVEE 600

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           L+ +  I +  A +IY+ FH  
Sbjct: 601 LSQVPEIPESTARQIYDFFHSE 622


>gi|294625331|ref|ZP_06703967.1| excinuclease ABC subunit C [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294663856|ref|ZP_06729305.1| excinuclease ABC subunit C [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600349|gb|EFF44450.1| excinuclease ABC subunit C [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292606374|gb|EFF49576.1| excinuclease ABC subunit C [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 619

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/607 (38%), Positives = 339/607 (55%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T + + P +  HR    +QG YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REQWPRIALHRGPRAVQGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V  V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC   ++   Y E V
Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAPSDYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I  +M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     + AC+    F  G+N GT +FF KT+ E +  +IL  F+ Q+Y +   P  
Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  E  L+E +      +KV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+  + +
Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++                   PDV+++DGG GQL+ AQ  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VEN + ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGVEN-VLLVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EG++  +A 
Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|304409201|ref|ZP_07390822.1| excinuclease ABC, C subunit [Shewanella baltica OS183]
 gi|307303204|ref|ZP_07582959.1| excinuclease ABC, C subunit [Shewanella baltica BA175]
 gi|304353022|gb|EFM17419.1| excinuclease ABC, C subunit [Shewanella baltica OS183]
 gi|306913564|gb|EFN43986.1| excinuclease ABC, C subunit [Shewanella baltica BA175]
          Length = 610

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 194/611 (31%), Positives = 324/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+   V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 17  SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHIDVTLTHSET 76

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYIL++ +H+ P L  HR     +G YFGP+ +
Sbjct: 77  DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 135

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ R+RPCL +Q+ RCS PC G++S+  Y E V  A
Sbjct: 136 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 195

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +   +   M  A  ++ YE A   RD++ AL  +    +   N   MD  
Sbjct: 196 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 255

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            ++++  +AC    F   G+  G+ +++    +++   ++L  F+ QFY +    +  P+
Sbjct: 256 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 315

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +  +    K  I    + ++   +  A+ NA  +   +LS + +
Sbjct: 316 EVVISHNFEELHELEAAVSEALDKKFSIKTNVRADRASFLRLAVTNATNAVVTRLSHKNT 375

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L    +R+E +D SH MG S V   VV    G  K +YR++N+    
Sbjct: 376 VEQRFVLLEEILELSTPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 433

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++    +                PD++ +DGG GQL  AQ 
Sbjct: 434 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 478

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  ++++    +I +AKG  R  G+E   +   E +  L    P L+ IQ +RDE+H
Sbjct: 479 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 538

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   L  + GIS 
Sbjct: 539 RFAIAGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 598

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 599 EMAQTIHDALR 609


>gi|21242831|ref|NP_642413.1| excinuclease ABC subunit C [Xanthomonas axonopodis pv. citri str.
           306]
 gi|81802352|sp|Q8PKS0|UVRC_XANAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|21108318|gb|AAM36949.1| excinuclease ABC subunit C [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 619

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/607 (38%), Positives = 340/607 (56%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T + + P +  HR    +QG YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REQWPRIALHRGPRAVQGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V  V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC   +++  Y E V
Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I  +M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     + AC+    F  G+N GT +FF KT+ E +  +IL  F+ Q+Y +   P  
Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  E  L+E +      +KV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+  + +
Sbjct: 376 HARSEALRELLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++                   PDV+++DGG GQL+ AQ  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVIPDVLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VEN + ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGVEN-VLLVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EG++  +A 
Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|46143849|ref|ZP_00133981.2| COG0322: Nuclease subunit of the excinuclease complex
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207765|ref|YP_001052990.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae L20]
 gi|229557974|sp|A3MYZ9|UVRC_ACTP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|126096557|gb|ABN73385.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 610

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 199/618 (32%), Positives = 329/618 (53%), Gaps = 33/618 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    ++YVGKA +L+KR+ SY  S   + +   +++ I++I  T+T 
Sbjct: 10  DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +P++N+LLRDDKS+PYIL+T KH+ P +   R S  + G YFGP
Sbjct: 70  SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y   
Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V+  + FL G +  + E + + M  A  + D+E+A   RD++ ++  +Q          +
Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+   F   G+  G  ++F K  + +  +++   F+ QFY      
Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I++ +   E T+L  +   +            +G+K + +  A  NA  + T +
Sbjct: 309 RTIPNQIIIDQSLSEVTALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  +   +           L  I  R+E +D SH MG   V   VV  +NG +K+ YR+F
Sbjct: 369 LKQDTHIRQRYDSLKALLNLAEIK-RMECFDISHTMGNQTVASCVVFDKNGPLKSDYRRF 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   L + + + ++ E+                PD++ +DGGKGQ
Sbjct: 428 NIEG--ITGGDDYAAMEQALLKLYDRNLEEEK---------------IPDIIFIDGGKGQ 470

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A      LNV   + +  ++ +AKG +R AG+E   + K  + + L    P L+ IQ
Sbjct: 471 LNRALETFTSLNVSWDKRKPLLVGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + 
Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKAATLEEIQ 590

Query: 591 SIEGISKKIACKIYNHFH 608
           S+ GISK++A  I++   
Sbjct: 591 SVPGISKQLAEVIFDTLQ 608


>gi|325927138|ref|ZP_08188403.1| Excinuclease ABC subunit C [Xanthomonas perforans 91-118]
 gi|325542494|gb|EGD13971.1| Excinuclease ABC subunit C [Xanthomonas perforans 91-118]
          Length = 619

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/607 (38%), Positives = 340/607 (56%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T + + P +  HR    +QG YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REQWPRIALHRGPRAVQGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V  V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC   +++  Y E V
Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I  +M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     + AC+    F  G+N GT +FF KT+ E +  +IL  F+ Q+Y +   P  
Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  E  L+E +      +KV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+  + +
Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++                   PDV+++DGG GQL+ AQ  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VEN + ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGVEN-VLLVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EG++  +A 
Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|325264719|ref|ZP_08131448.1| excinuclease ABC subunit C [Clostridium sp. D5]
 gi|324030011|gb|EGB91297.1| excinuclease ABC subunit C [Clostridium sp. D5]
          Length = 625

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 194/619 (31%), Positives = 319/619 (51%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N   +I  M++ I    +
Sbjct: 11  ELKKLPASPGVYIMHDEKDNIIYVGKAISLKNRVRQYFQSSRNKGVKIEQMVTHIRRFEY 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDK++P+I +T     P +   R     +  
Sbjct: 71  IVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTTNEPFPRVMLARKMLKDKAK 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV  TI+ + + + +RSC  ++ +   + RPCL + IK+C  PC G IS E
Sbjct: 131 YFGPYTSGLAVRDTIDLIHKLYHVRSCNRNLPKDIGKERPCLNYHIKQCEAPCQGYISQE 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y + + E  +FL+G    +   +   MN A+   ++E AI +R+ L ++  +       
Sbjct: 191 EYGKSIQEIIRFLNGHFDGILNDLEEKMNAASEALEFEKAIEYRELLNSVKKVSQKQKIT 250

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           DS     D  ++   +  A +Q  F   G+  G   F+L+      +++IL  F++Q+Y 
Sbjct: 251 DSSGEDRDILAVATEEEDAVVQVFFIRGGRLIGRDHFYLRITKNEEDSEILDSFIKQYYA 310

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  ++L  E E+  LLE     + G KV I VPK+G K K++E A  NA      
Sbjct: 311 GTPFIPGELMLPAELEDMHLLEEWLSTKRGGKVTIKVPKKGTKEKLVELAANNASLVLSK 370

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      L     R+E +D S+  G  +VG MVV       +N
Sbjct: 371 DKERLKREEGRTIGAVKEIASLLELE-DINRMEAFDISNTNGFESVGSMVVYERGRPKRN 429

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    ++  DD   MR VL RRF+  ++  E       +    F ++PD++++D
Sbjct: 430 DYRKFKIKG--IQGADDYGSMREVLTRRFTHGLREREE-----SRDLGGFTAFPDLILMD 482

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL  L++   I +  + K          +     E + ++        +
Sbjct: 483 GGKGQVNVALQVLDDLHL--NIPVCGMVKDDYHRTRGLYYH---NEEIPIDKSSEAFRLV 537

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR+ R K   +S LD+I GIGP R++ L++ + ++  I  +S E L
Sbjct: 538 TRIQDEAHRFAIEYHRQLRGKGQVHSILDDIEGIGPARRKALMRHYMSLDAIKAASVEEL 597

Query: 590 ASIEGISKKIACKIYNHFH 608
           A +  +++K A  +Y  FH
Sbjct: 598 AKVPSMNEKSAQAVYVFFH 616


>gi|119944946|ref|YP_942626.1| excinuclease ABC, C subunit [Psychromonas ingrahamii 37]
 gi|119863550|gb|ABM03027.1| Excinuclease ABC subunit C [Psychromonas ingrahamii 37]
          Length = 609

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 210/619 (33%), Positives = 323/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +   +V+YVGKA NL+KR+ SY        +   ++S I+ I  TV
Sbjct: 10  LKTVTSEPGVYRMFNQQ-KVIYVGKAKNLKKRLSSYFSLTQKHPKTLALVSHIDRIEVTV 68

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSY 121
           T TE EAL+LE N IKR KP +N+LLRDDKS+PY+ ++  HK P L   R  +   +G+Y
Sbjct: 69  THTETEALILEHNFIKRYKPHYNVLLRDDKSYPYLFLS-DHKHPQLTLVRTQNSKRKGTY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ S  AV ++++ +Q+ F +R C DS + +R+RPCL +Q+KRC  PC   +   +Y 
Sbjct: 128 FGPYPSGGAVRESLHLMQKLFPIRQCEDSYYSNRSRPCLQYQLKRCLAPCVNAMPESEYQ 187

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             V  A  FL G + N+  ++   M  A+   ++E A + RD++ +L  +Q       + 
Sbjct: 188 HQVELASAFLQGKSQNVINQLVDEMEVASQTLEFEKAAVRRDQIQSLKKVQEQQWVSGDI 247

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
            ++D     + +  A I   F   G+  G+  +F K    S+  ++LS FL QFY     
Sbjct: 248 EQLDVVGFSYEQGFASIHLLFVRQGRILGSRNYFPKIPKNSSKDEVLSAFLSQFYLSGQN 307

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILLS++  E ++    F +  GYK  + V  +GE+ + ++ A  NA  +    
Sbjct: 308 GRAIPREILLSDDFAERAIFTDLFTEYCGYKTALKVDVRGERARFVKLAQKNAQIALQSH 367

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +     +    K  L     R+E YD SH+MG   V   VV    G  K+ YR+F
Sbjct: 368 LSQKNNILKRYQLLEAKLDLSKPILRMECYDISHMMGEKTVASCVVFNREGEKKSDYRRF 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RRF  L + E                 PD++ +DGG GQ
Sbjct: 428 NI--TGITPGDDYAAMGQVLARRFKALQETEN---------------IPDIIFIDGGVGQ 470

Query: 476 LSAAQGVLKKLN---VENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ ++  L     +    +I IAKG  R  G+E   +    E + L+   P L+ IQ
Sbjct: 471 LNQAENIISSLEENFKDKYPLLIGIAKGEGRKPGLETLILAGTHEIIELSSDSPALHLIQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           ++RDE+HRFAI  HR++R K    S L+ I+G+G  R++ LL   G ++ +  +S + L 
Sbjct: 531 QIRDESHRFAIMGHRQQRDKTRRTSTLENISGVGTKRRQALLNHLGGLQGVMSASIDELQ 590

Query: 591 SIEGISKKIACKIYNHFHK 609
            I GIS  +A  IY   H 
Sbjct: 591 KIPGISASLAETIYEALHN 609


>gi|58581915|ref|YP_200931.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623827|ref|YP_451199.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576513|ref|YP_001913442.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|75435408|sp|Q5H0H5|UVRC_XANOR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367861|sp|Q2P3F2|UVRC_XANOM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229557876|sp|B2SKI8|UVRC_XANOP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|58426509|gb|AAW75546.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367767|dbj|BAE68925.1| excinuclease ABC subunit C [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520965|gb|ACD58910.1| excinuclease ABC, C subunit [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 618

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/607 (38%), Positives = 341/607 (56%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T +H  P +  HR    +QG YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLTREH-WPRIALHRGPRAVQGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V  V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC   +++  Y E V
Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I ++M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     + AC+    F  G+N GT +FF KT+ E +  +IL  F+ Q+Y +   P  
Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  ET L+E +      +KV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDREIPETELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+  + +
Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++                   PDV+++DGG GQL+ AQ  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VEN   ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGVENVW-LVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EG++  +A 
Sbjct: 539 TGHRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|259908856|ref|YP_002649212.1| excinuclease ABC subunit C [Erwinia pyrifoliae Ep1/96]
 gi|224964478|emb|CAX55988.1| UvrABC system protein C [Erwinia pyrifoliae Ep1/96]
 gi|283478843|emb|CAY74759.1| UvrABC system protein C [Erwinia pyrifoliae DSM 12163]
          Length = 610

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 214/618 (34%), Positives = 341/618 (55%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY   N  + +   +++ I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDSAGTVIYVGKAKDLKKRLASYFRGNLASRKTEALVALIEQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++  H  P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSADH-HPRLASHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T++ LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    ++ E+Y 
Sbjct: 130 GPFPNGYAVRETLSLLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVTEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             +   + FLSG +  +  ++   M QA+ +  +E A   RD++ A+  +          
Sbjct: 190 RQIDYVRLFLSGKDDQVLNQLVTRMEQASRELRFEEAGRLRDQIQAVRRVTEKQFVSNQG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + MD   +  +  +AC+   F   G+  G+ ++F K    +  A+++  F+ QFY     
Sbjct: 250 DDMDVIGVSFDSGMACLHVLFIRQGKVLGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +IL+     E  LL  S  +  G +V I    +G++ + ++ A  NA  + T +
Sbjct: 310 ARTLPADILIDFTLPEKELLAASLTELAGRRVTIQSKPRGDRARYLKLARTNAATALTSR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+   +    L +  +   LP I  R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LAQHSTIHQRLAELAQTLKLPAIR-RMECFDISHTMGEQTVASCVVFDTNGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMNQVLRRRYGKAIEQSK---------------IPDVIVIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++   ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ
Sbjct: 472 LAQAKEVFAQLDVAWDKSHPLLLGVAKGSDRKAGLETLFLEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AIT HR +R K    S L+ I GIGP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAITGHRNKRAKVKNTSALETIEGIGPKRRQMLLKYMGGLQPLINASMEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI++   
Sbjct: 592 GVPGISHALAEKIFHALK 609


>gi|300704599|ref|YP_003746202.1| uvrABC system protein C [Ralstonia solanacearum CFBP2957]
 gi|299072263|emb|CBJ43596.1| UvrABC system protein C (Excinuclease ABC subunit C) [Ralstonia
           solanacearum CFBP2957]
          Length = 668

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 204/641 (31%), Positives = 317/641 (49%), Gaps = 52/641 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TV  
Sbjct: 43  RLPNLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIARIETTVVR 102

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ ++ +H  P +  +R ++  +  YFGP
Sbjct: 103 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLS-QHAYPRMAYYRGATDRRHQYFGP 161

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC   IS E Y   V
Sbjct: 162 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISPEDYARDV 221

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240
             A  FL G    + + +   M +  +  ++E A   RD++ ALS +            +
Sbjct: 222 GNAAGFLLGRQDEVMQTLQDKMQRHAVALEFEQAAAVRDQIGALSTVLTRQSVEEVGQAS 281

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--------------------- 279
            +D  ++      AC+       G++ G   +F     +                     
Sbjct: 282 DIDILAVAIEGGHACVNLAMVRGGRHLGDKAYFPTHVEDGAAIVGVDVEADVPEGAEMQP 341

Query: 280 --STNAQIL-----SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
               + + +       F+ Q Y D+  P  +++S       L+E    +  G +V +   
Sbjct: 342 EPERDPERMARDILEAFVAQHYLDQFVPPVLVVSHPIRAAGLIEALAAQA-GRRVSVVRQ 400

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389
            QG +R  +E A   A  S  ++LS + S Q   +   +   +        R+E +D SH
Sbjct: 401 PQGARRAWLEMAEKGAELSLARRLSEQGSQQARTRALAEIIGIDLEDLATLRVECFDISH 460

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G +     VV   +     +YR++N+    +   DD A MR VL RR+ ++++     
Sbjct: 461 TAGEATQASCVVFHSHAMQNGEYRRYNIQG--ITPGDDYAAMRQVLTRRYQKVVEQAAE- 517

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                      P  P  V++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+E 
Sbjct: 518 ---------DTPDMPHTVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 567

Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+EI GIG  R
Sbjct: 568 LVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKTRNTSRLEEIEGIGAKR 627

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S E L ++EGIS+ +A +IY   H
Sbjct: 628 RQRLLARFGGLRGVMAASVEELTTVEGISQTLAEEIYRQLH 668


>gi|328474717|gb|EGF45522.1| excinuclease ABC subunit C [Vibrio parahaemolyticus 10329]
          Length = 610

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 204/619 (32%), Positives = 322/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +LQKR+ SY      + +   ++S I  I  TV
Sbjct: 11  LKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKRKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181
           GP+    AV +T++ LQ+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS E+Y 
Sbjct: 130 GPYPDSGAVRETLHLLQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSSIISDEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E V   + FL G +  + +++   M  A+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 ELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDS 249

Query: 242 MDCF---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           MD            +ACI       G+  G+ + F K    ++  ++   FL Q+Y    
Sbjct: 250 MDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHN 309

Query: 299 ----CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                P  I+L++E  ++   ++ +  +  G KV       G + + ++ +  NA  + T
Sbjct: 310 EARTIPSRIILNQELADDLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAIT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K   +   +     R+E +D SH MG S +   VV    G VK +YR
Sbjct: 370 TKINHKMTINQRFKALRETLGME-SIMRMECFDISHTMGESTIASCVVFNNEGPVKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M   LERR+S+ +  E+                PD++ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMGQALERRYSKQLDVEK---------------IPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++ +   +   R  +I IAKG  R  G+E      GE   L    P L+ IQ
Sbjct: 472 GQLNRAHEIIAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  I+    +
Sbjct: 592 KVPGISHSLAEIIFQALKQ 610


>gi|323493302|ref|ZP_08098426.1| excinuclease ABC subunit C [Vibrio brasiliensis LMG 20546]
 gi|323312465|gb|EGA65605.1| excinuclease ABC subunit C [Vibrio brasiliensis LMG 20546]
          Length = 609

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 208/619 (33%), Positives = 325/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY  S   + +   ++S I  I  TV
Sbjct: 10  LKTVTNQPGVYRMYNAESVVIYVGKAKDLKKRLSSYFRSKVDSEKTRALVSNIAKIDVTV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR +   +G YF
Sbjct: 70  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKRKGEYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+ PC    IS + Y 
Sbjct: 129 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAAPCVSSVISDQDYS 188

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E V   + FL G +  +   +   M QA+ +  +E A   RD++ A+  +Q       + 
Sbjct: 189 ELVGLVRLFLQGKDQQVLASLVEKMEQASQQLRFEQAAKFRDQIQAIRRVQEQQFVSEDS 248

Query: 242 MDCF---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           MD            +ACI       G+  G+ + F K  + +T  ++   FL Q+Y    
Sbjct: 249 MDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPNNTTQQEVFYSFLSQYYLSHN 308

Query: 299 ----CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                P  I+L+    +E+  LE +     G +V   V   G + + ++ +  NA  + T
Sbjct: 309 EARTIPTRIILNSGLTDESQPLEEALTSLAGRRVHFHVNPSGTRGRYLKLSNTNALTAIT 368

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K   +   +  I  R+E +D SH MG S +   VV  + G VK +YR
Sbjct: 369 TKINHKMTISQRFKALRELLDMESIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYR 427

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+  + +   DD A M  VLERR+S+ +  E+                PD+V +DGGK
Sbjct: 428 RYNI--SGITGGDDYAAMGQVLERRYSKQLDVEK---------------IPDIVFIDGGK 470

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++ +   +   R  +I IAKG  R  G+E     +GE   L    P L+ +Q
Sbjct: 471 GQLNRAHEIISRYWGDWPKRPHLIGIAKGVTRKPGLETLITVEGEEFNLPSDAPALHLMQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 531 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIA 590

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 591 KVPGISTSLAENIYQALKQ 609


>gi|303252515|ref|ZP_07338678.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307247263|ref|ZP_07529312.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648483|gb|EFL78676.1| excinuclease ABC subunit C [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306856236|gb|EFM88390.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 610

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 200/618 (32%), Positives = 329/618 (53%), Gaps = 33/618 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    ++YVGKA +L+KR+ SY  S   + +   +++ I++I  T+T 
Sbjct: 10  DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +P++N+LLRDDKS+PYIL+T KH+ P +   R S  + G YFGP
Sbjct: 70  SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y   
Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V+  + FL G +  + E + + M  A    D+E+A   RD++ ++  +Q          +
Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQDLDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+   F   G+  G  ++F K  + +  +++   F+ QFY      
Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I++ +   E T+L  +   +            +G+K + +  A  NA  + T +
Sbjct: 309 RTIPNQIIIDQSLSEVTALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  +   +           L  I  R+E +D SH MG   V   VV  ENG +K+ YR+F
Sbjct: 369 LKQDTHIRQRYDSLKTLLNLAEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A +   L +R+ + ++ E+                PD++ +DGGKGQ
Sbjct: 428 NIEG--ITGGDDYAAIEQALLKRYDRNLEEEK---------------IPDIIFIDGGKGQ 470

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A      LNV   + +  ++ +AKG +R AG+E   + K  + + L    P L+ IQ
Sbjct: 471 LNRALETFTSLNVSWDKRKPLLVGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + 
Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKAATLEEIQ 590

Query: 591 SIEGISKKIACKIYNHFH 608
           S+ GISK++A  I++   
Sbjct: 591 SVPGISKQLAEVIFDTLQ 608


>gi|170699578|ref|ZP_02890618.1| excinuclease ABC, C subunit [Burkholderia ambifaria IOP40-10]
 gi|170135529|gb|EDT03817.1| excinuclease ABC, C subunit [Burkholderia ambifaria IOP40-10]
          Length = 681

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 215/668 (32%), Positives = 331/668 (49%), Gaps = 69/668 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDTVGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R S   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS++ Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISADDYAIDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS-----------EST--------- 281
            D  ++       C+       G++ G   +F                + +         
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVESALTLAEGGLGDESDGADGADEA 317

Query: 282 ---------------------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSL 314
                                       A++L  F+ Q Y     P  +++S       L
Sbjct: 318 AAALPGEPADEAAAARDGAASASGASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDL 377

Query: 315 LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFA 374
           LE+   +Q G+KV +    QG++R  +  A  NA  +  + LS + S Q   +   +  +
Sbjct: 378 LEL-LSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALAETLS 436

Query: 375 LPHI---PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
                    RIE +D SH MG +     VV   +     +YR++N+    +   DD A M
Sbjct: 437 FECDDLAMLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAM 494

Query: 432 RMVLERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           R VL RR+ ++++         +   ++    +Q  +    P++V++DGGKGQ+  A+ V
Sbjct: 495 RQVLTRRYEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQV 554

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFA 541
             +L ++  + ++ +AKG  R  G+E      G   L L      L  + ++RDEAHRFA
Sbjct: 555 FTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMLVAQIRDEAHRFA 613

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT  R +R KA   S L+E+ GIG  R++ LL  FG ++ +  +S E LAS+EGIS  +A
Sbjct: 614 ITGMRAKRAKARQTSRLEELEGIGAKRRQRLLARFGGLRGVVAASVEELASVEGISHALA 673

Query: 601 CKIYNHFH 608
            +IY   H
Sbjct: 674 EQIYKQLH 681


>gi|262165478|ref|ZP_06033215.1| excinuclease ABC subunit C [Vibrio mimicus VM223]
 gi|262025194|gb|EEY43862.1| excinuclease ABC subunit C [Vibrio mimicus VM223]
          Length = 610

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 206/619 (33%), Positives = 324/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TV
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDDGYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E V+  + FL G ++ +   +   M  A+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 EIVNYLRLFLHGKDNQVLSILVEKMELASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296
               D         +ACI       G+  G+ + F +  +E++  ++   FL Q+Y    
Sbjct: 250 LEDQDVLGFAQENGIACIHILMIRQGKVLGSRSHFPRIPAETSQIEVFESFLSQYYLSHS 309

Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +  P  I+L++   EET  L+++  +  G KV   V   G + + +  A  NA  + T
Sbjct: 310 EARSIPTRIILNQGLTEETEALQMAISELAGRKVTFHVNPTGTRGRYLRLANTNALTAIT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K   ++  +  I  R+E +D SH MG S +   VV  + G VK +YR
Sbjct: 370 TKINHKMTIGQRFKALQEELGMDAIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M  VLERR+S+ +                    PD++ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++     +      II IAKG  R  G+E      G+   L    P L+ IQ
Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR  R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHNHAIAGHRALRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 592 KVPGISHALAENIYQALKQ 610


>gi|28898718|ref|NP_798323.1| excinuclease ABC subunit C [Vibrio parahaemolyticus RIMD 2210633]
 gi|32130286|sp|Q87NC4|UVRC_VIBPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|28806936|dbj|BAC60207.1| excinuclease ABC, subunit C [Vibrio parahaemolyticus RIMD 2210633]
          Length = 610

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 205/619 (33%), Positives = 323/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +LQKR+ SY      + +   ++S I  I  TV
Sbjct: 11  LKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYILI+  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYILIS-GHKHPRLSMHRGAKKRKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181
           GP+    AV +T++ LQ+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS E+Y 
Sbjct: 130 GPYPDSGAVRETLHLLQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSSIISDEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E V   + FL G +  + +++   M  A+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 ELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDS 249

Query: 242 MDCF---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           MD            +ACI       G+  G+ + F K    ++  ++   FL Q+Y    
Sbjct: 250 MDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHN 309

Query: 299 ----CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                P  I+L++E  ++   ++ +  +  G KV       G + + ++ +  NA  + T
Sbjct: 310 EARTIPSRIILNQELADDLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAIT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K   +   +     R+E +D SH MG S +   VV    G VK +YR
Sbjct: 370 TKINHKMTINQRFKALRETLGME-SIMRMECFDISHTMGESTIASCVVFNNEGPVKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M   LERR+S+ +  E+                PD++ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMGQALERRYSKQLDVEK---------------IPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++ +   +   R  +I IAKG  R  G+E      GE   L    P L+ IQ
Sbjct: 472 GQLNRAHEIIAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  I+    +
Sbjct: 592 KVPGISHSLAEIIFQALKQ 610


>gi|225568882|ref|ZP_03777907.1| hypothetical protein CLOHYLEM_04961 [Clostridium hylemonae DSM
           15053]
 gi|225162381|gb|EEG75000.1| hypothetical protein CLOHYLEM_04961 [Clostridium hylemonae DSM
           15053]
          Length = 612

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 201/619 (32%), Positives = 323/619 (52%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y   S +   +I  M++ I    +
Sbjct: 7   ELKKLPGKPGVYIMHDEKDDIIYVGKAISLKNRVRQYFQMSRSKGVKIDQMVTHIARFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDKS+P+I +T     P +   R     +  
Sbjct: 67  IVTDSELEALVLECNLIKEHRPKYNTMLMDDKSYPFIKVTVDEPFPRIMLARKMVKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  +++ + +RSC+  + R   R RPCL + I +C  PC G IS E
Sbjct: 127 YFGPYTSAGAVKDTIELIRKLYNIRSCSRKLPRDIGRERPCLNYHIHQCKAPCQGYISQE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + + E  +FL+G    + +++   M  A+   ++E AI +R+ L ++  I       
Sbjct: 187 DYRKSIDEVLRFLNGNYDLILKELEEKMQCASEAMEFEKAIEYRELLNSVQKIAQKQKIT 246

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  ++   +  A +Q  F   G+  G   F+L+     + A+ILS F++QFY 
Sbjct: 247 DTAGDDRDILAVATEEEDAVVQVFFIRGGRLIGRDHFYLRITKGESEAEILSSFIKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  ++L EE E+  ++E    ++ G+KV + VPK+G K K++E A  NA      
Sbjct: 307 GTPYIPSQLMLQEEIEDLEVVEEWLTRRRGHKVHLRVPKKGAKEKLVELAQKNAALVLST 366

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+  K   L  I  R+E YD S+  G ++VG M+V  +    +N
Sbjct: 367 DKERLKREEGRTIGAVKELEKLLGLKGIV-RMEAYDISNTNGFASVGSMIVYEKGKPKRN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V+  DD A M  VL RRF   +K  E       K   SF ++PD++++D
Sbjct: 426 DYRKFKIKG--VQGADDYASMEEVLTRRFVHGMKEMEE-----GKDMGSFTAFPDLILMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL +L +   I +  + K              + E + +         I
Sbjct: 479 GGKGQVNVAVQVLDRLRL--NIPVCGMVKDDNHRTRG---LFYQNEEIPIEKDSEGFKLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAIT HRK R +   +S LD+I G+GP R++ L+  F  +  I  ++ E L
Sbjct: 534 TRIQDEAHRFAITFHRKLRSQGQVHSVLDDIPGVGPARRKDLMSHFSNLDAIKNATVEEL 593

Query: 590 ASIEGISKKIACKIYNHFH 608
             +  +++K A  +YN FH
Sbjct: 594 GRLPSMNEKSARDVYNFFH 612


>gi|289427080|ref|ZP_06428796.1| excinuclease ABC, C subunit [Propionibacterium acnes J165]
 gi|295130383|ref|YP_003581046.1| excinuclease ABC, C subunit [Propionibacterium acnes SK137]
 gi|289159549|gb|EFD07737.1| excinuclease ABC, C subunit [Propionibacterium acnes J165]
 gi|291375448|gb|ADD99302.1| excinuclease ABC, C subunit [Propionibacterium acnes SK137]
 gi|313764678|gb|EFS36042.1| excinuclease ABC subunit C [Propionibacterium acnes HL013PA1]
 gi|313772464|gb|EFS38430.1| excinuclease ABC subunit C [Propionibacterium acnes HL074PA1]
 gi|313791727|gb|EFS39838.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA1]
 gi|313807298|gb|EFS45785.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA2]
 gi|313809805|gb|EFS47526.1| excinuclease ABC subunit C [Propionibacterium acnes HL083PA1]
 gi|313815745|gb|EFS53459.1| excinuclease ABC subunit C [Propionibacterium acnes HL059PA1]
 gi|313818344|gb|EFS56058.1| excinuclease ABC subunit C [Propionibacterium acnes HL046PA2]
 gi|313820106|gb|EFS57820.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA1]
 gi|313823085|gb|EFS60799.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA2]
 gi|313825639|gb|EFS63353.1| excinuclease ABC subunit C [Propionibacterium acnes HL063PA1]
 gi|313830718|gb|EFS68432.1| excinuclease ABC subunit C [Propionibacterium acnes HL007PA1]
 gi|313833936|gb|EFS71650.1| excinuclease ABC subunit C [Propionibacterium acnes HL056PA1]
 gi|314915173|gb|EFS79004.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA4]
 gi|314918373|gb|EFS82204.1| excinuclease ABC subunit C [Propionibacterium acnes HL050PA1]
 gi|314919862|gb|EFS83693.1| excinuclease ABC subunit C [Propionibacterium acnes HL050PA3]
 gi|314925334|gb|EFS89165.1| excinuclease ABC subunit C [Propionibacterium acnes HL036PA3]
 gi|314931877|gb|EFS95708.1| excinuclease ABC subunit C [Propionibacterium acnes HL067PA1]
 gi|314956035|gb|EFT00433.1| excinuclease ABC subunit C [Propionibacterium acnes HL027PA1]
 gi|314958429|gb|EFT02532.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA1]
 gi|314960220|gb|EFT04322.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA2]
 gi|314963026|gb|EFT07126.1| excinuclease ABC subunit C [Propionibacterium acnes HL082PA1]
 gi|314968143|gb|EFT12242.1| excinuclease ABC subunit C [Propionibacterium acnes HL037PA1]
 gi|314973144|gb|EFT17240.1| excinuclease ABC subunit C [Propionibacterium acnes HL053PA1]
 gi|314976313|gb|EFT20408.1| excinuclease ABC subunit C [Propionibacterium acnes HL045PA1]
 gi|314978206|gb|EFT22300.1| excinuclease ABC subunit C [Propionibacterium acnes HL072PA2]
 gi|314983478|gb|EFT27570.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA1]
 gi|315077671|gb|EFT49727.1| excinuclease ABC subunit C [Propionibacterium acnes HL053PA2]
 gi|315080275|gb|EFT52251.1| excinuclease ABC subunit C [Propionibacterium acnes HL078PA1]
 gi|315084537|gb|EFT56513.1| excinuclease ABC subunit C [Propionibacterium acnes HL027PA2]
 gi|315085874|gb|EFT57850.1| excinuclease ABC subunit C [Propionibacterium acnes HL002PA3]
 gi|315088709|gb|EFT60685.1| excinuclease ABC subunit C [Propionibacterium acnes HL072PA1]
 gi|315096339|gb|EFT68315.1| excinuclease ABC subunit C [Propionibacterium acnes HL038PA1]
 gi|315098318|gb|EFT70294.1| excinuclease ABC subunit C [Propionibacterium acnes HL059PA2]
 gi|315100987|gb|EFT72963.1| excinuclease ABC subunit C [Propionibacterium acnes HL046PA1]
 gi|315108269|gb|EFT80245.1| excinuclease ABC subunit C [Propionibacterium acnes HL030PA2]
 gi|327325972|gb|EGE67762.1| excinuclease ABC subunit C [Propionibacterium acnes HL096PA2]
 gi|327332157|gb|EGE73894.1| excinuclease ABC subunit C [Propionibacterium acnes HL096PA3]
 gi|327442778|gb|EGE89432.1| excinuclease ABC subunit C [Propionibacterium acnes HL013PA2]
 gi|327446148|gb|EGE92802.1| excinuclease ABC subunit C [Propionibacterium acnes HL043PA2]
 gi|327447873|gb|EGE94527.1| excinuclease ABC subunit C [Propionibacterium acnes HL043PA1]
 gi|327451000|gb|EGE97654.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA3]
 gi|327452921|gb|EGE99575.1| excinuclease ABC subunit C [Propionibacterium acnes HL092PA1]
 gi|327453651|gb|EGF00306.1| excinuclease ABC subunit C [Propionibacterium acnes HL083PA2]
 gi|328753031|gb|EGF66647.1| excinuclease ABC subunit C [Propionibacterium acnes HL087PA1]
 gi|328753688|gb|EGF67304.1| excinuclease ABC subunit C [Propionibacterium acnes HL020PA1]
 gi|328759223|gb|EGF72839.1| excinuclease ABC subunit C [Propionibacterium acnes HL025PA2]
 gi|332675222|gb|AEE72038.1| UvrABC system protein C [Propionibacterium acnes 266]
          Length = 672

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 190/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 13  TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 73  QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T+ +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+S+ +
Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   E   F++G    + +++   M +A+   ++E A + RD L ALS     N  +  
Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +++S E     ++      + G  V+I VP++G+K  +++  
Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P RIE YD SHI G + VG MV
Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F++     +  DD A M  VL RR  +LI++ +             
Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   +   ++L      LY +QRLRDEAHRFAIT HR +R KA   S LD ++G+G  
Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R++ L+  FG+V+ + +++ + +  + G   K+A ++     ++  
Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651


>gi|145636737|ref|ZP_01792403.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH]
 gi|145270035|gb|EDK09972.1| excinuclease ABC subunit C [Haemophilus influenzae PittHH]
          Length = 609

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 210/616 (34%), Positives = 340/616 (55%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I  T+T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  +++  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPTDTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE    +Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLSEKSELEQLLTEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +   +   LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCELLNLPEIK-RMECFDISHTMGNQTVASCVVFNKEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A +I+     +
Sbjct: 594 ISPKLAERIFETLKND 609


>gi|260582025|ref|ZP_05849820.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127]
 gi|260094915|gb|EEW78808.1| excinuclease ABC, C subunit [Haemophilus influenzae NT127]
          Length = 609

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 210/616 (34%), Positives = 339/616 (55%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I  T+T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFTGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASKNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE    +Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +   +   LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCELLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A +I+     +
Sbjct: 594 ISPKLAERIFETLKND 609


>gi|258626431|ref|ZP_05721278.1| excinuclease ABC subunit C [Vibrio mimicus VM603]
 gi|258581483|gb|EEW06385.1| excinuclease ABC subunit C [Vibrio mimicus VM603]
          Length = 610

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 207/619 (33%), Positives = 324/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TV
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDDGYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E V+  + FL G ++ +   +   M  A+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 EIVNYLRLFLQGKDNQVLSILVEKMELASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296
               D         +ACI       G+  G+ + F K  +E++  ++   FL Q+Y    
Sbjct: 250 LEDQDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPAETSQIEVFESFLSQYYLSHS 309

Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +  P  I+L++   EET  L+ +  +  G KV   V   G + + +  A  NA  + T
Sbjct: 310 EARSIPTRIILNQGLTEETEALQTAITELAGRKVTFHVNPTGTRGRYLRLANTNALTAIT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K   ++  +  I  R+E +D SH MG S +   VV  + G VK +YR
Sbjct: 370 TKINHKMTIGQRFKALQEELGMDVIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M  VLERR+S+ +                    PD++ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++     +      II IAKG  R  G+E      G+   L    P L+ IQ
Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 592 KVPGISHALAENIYQALKQ 610


>gi|307245091|ref|ZP_07527184.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254046|ref|ZP_07535893.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258502|ref|ZP_07540239.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|307260737|ref|ZP_07542426.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306853980|gb|EFM86192.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862971|gb|EFM94918.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867406|gb|EFM99257.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306869576|gb|EFN01364.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 610

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 199/618 (32%), Positives = 330/618 (53%), Gaps = 33/618 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    ++YVGKA +L+KR+ SY  S   + +   +++ I++I  T+T 
Sbjct: 10  DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +P++N+LLRDDKS+PYIL+T KH+ P +   R S  + G YFGP
Sbjct: 70  SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y   
Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V+  + FL G +  + E + + M  A  + D+E+A   RD++ ++  +Q          +
Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+   F   G+  G  ++F K  + +  +++   F+ QFY      
Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I++ +   E T+L  +   +            +G+K + +  A  NA  + T +
Sbjct: 309 RTIPNQIIIDQSLSEVTALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  +   +           L  I  R+E +D SH MG   V   VV  +NG +K+ YR+F
Sbjct: 369 LKQDTHIRQRYDSLKALLNLAEIK-RMECFDISHTMGNQTVASCVVFDKNGPLKSDYRRF 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A +   L +R+ + ++ E+                PD++ +DGGKGQ
Sbjct: 428 NIEG--ITGGDDYAAIEQALLKRYDRNLEEEK---------------IPDIIFIDGGKGQ 470

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A      LNV   + +  ++ +AKG +R AG+E   + K  + + L    P L+ IQ
Sbjct: 471 LNRALETFTSLNVSWDKRKPLLVGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + 
Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKAATLEEIQ 590

Query: 591 SIEGISKKIACKIYNHFH 608
           S+ GISK++A  I++   
Sbjct: 591 SVPGISKQLAEVIFDTLQ 608


>gi|83748435|ref|ZP_00945457.1| Excinuclease ABC subunit C [Ralstonia solanacearum UW551]
 gi|207743582|ref|YP_002259974.1| excinuclease abc subunit c (sos response dna repair protein)
           [Ralstonia solanacearum IPO1609]
 gi|83724846|gb|EAP72002.1| Excinuclease ABC subunit C [Ralstonia solanacearum UW551]
 gi|206594981|emb|CAQ61908.1| excinuclease abc subunit c (sos response dna repair protein)
           [Ralstonia solanacearum IPO1609]
          Length = 668

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 208/641 (32%), Positives = 319/641 (49%), Gaps = 52/641 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TV  
Sbjct: 43  RLPNLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIARIETTVVR 102

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ ++ +H  P +  +R ++  +  YFGP
Sbjct: 103 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLS-QHAYPRMAYYRGATDRRHQYFGP 161

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC   IS E Y   V
Sbjct: 162 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISPEDYARDV 221

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240
             A  FL G    + + +   M +  +  ++E A   RD++ ALS +            +
Sbjct: 222 ANAAGFLLGRQDEVMQTLQDKMQRHAVALEFEQAAAVRDQIGALSTVLTRQSVEEVGQAS 281

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276
            +D  ++      AC+       G++ G   +F                           
Sbjct: 282 DIDILAVAIEGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADVPEGTETQP 341

Query: 277 ----DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
               D E     IL  F+ Q Y D+  P  +++S       L+E    +  G +V +   
Sbjct: 342 EPARDPERMARDILEAFVAQHYLDQFVPPVLVVSHPIRAAGLIEALAAQA-GRRVSVVRQ 400

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389
            QG +R  +E A   A  S  ++LS + S Q   +   +   +        R+E +D SH
Sbjct: 401 PQGARRAWLEMAEKGAELSLARRLSEQGSQQARTRALAETIGIDLEDLATLRVECFDISH 460

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G +     VV   +     +YR++N+    +   DD A MR VL RR+ ++++     
Sbjct: 461 TAGEATQASCVVFHSHAMQNGEYRRYNIQG--ITPGDDYAAMRQVLTRRYQKVVEQAAE- 517

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                      P  P++V++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+E 
Sbjct: 518 ---------DTPDVPNIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 567

Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                    L L      L  + ++RDEAHRFAIT  R +R KA   S L+EI GIG  R
Sbjct: 568 LVFADERPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKARNTSRLEEIEGIGAKR 627

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S E L ++EGIS+ +A +IY   H
Sbjct: 628 RQRLLARFGGLRGVMTASVEELTTVEGISQTLAEEIYRQLH 668


>gi|313838516|gb|EFS76230.1| excinuclease ABC subunit C [Propionibacterium acnes HL086PA1]
          Length = 672

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 189/646 (29%), Positives = 316/646 (48%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 13  TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 73  QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T+ +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+S+ +
Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   E   F++G    + +++   M +A+   ++E A + R  L ALS     N  +  
Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRGSLGALSKTLERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +++S E     ++      + G  V+I VP++G+K  +++  
Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P RIE YD SHI G + VG MV
Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F++     +  DD A M  VL RR  +LI++ +             
Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   +   ++L      LY +QRLRDEAHRFAIT HR +R KA   S LD ++G+G  
Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R++ L+  FG+V+ + +++ + +  + G   K+A ++     ++  
Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651


>gi|207725207|ref|YP_002255603.1| excinuclease abc subunit c (sos response dna repair protein)
           [Ralstonia solanacearum MolK2]
 gi|206590441|emb|CAQ37403.1| excinuclease abc subunit c (sos response dna repair protein)
           [Ralstonia solanacearum MolK2]
          Length = 668

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 207/641 (32%), Positives = 317/641 (49%), Gaps = 52/641 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TV  
Sbjct: 43  RLPNLPGVYRYFDAQGSVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVAKIARIETTVVR 102

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ ++ +H  P +  +R ++  +  YFGP
Sbjct: 103 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLS-QHAYPRMAYYRGATDRRHQYFGP 161

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RC+ PC   IS E Y   V
Sbjct: 162 FPSAHAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTAPCVQAISPEDYARDV 221

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240
             A  FL G    + + +   M +  +  ++E A   RD++ ALS +            +
Sbjct: 222 ANAAGFLLGRQDEVMQTLQDKMQRHAVALEFEQAAAVRDQIGALSTVLTRQSVEEVGQAS 281

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------------------------ 276
            +D  ++      AC+       G++ G   +F                           
Sbjct: 282 DIDILAVAIEGGHACVNLAMVRGGRHLGDKAYFPTHVEEGAAIVGVDVEADVPEGTETQP 341

Query: 277 ----DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
               D E     IL  F+ Q Y D+  P  +++S       L+E    +  G +V +   
Sbjct: 342 EPARDPERMARDILEAFVAQHYLDQFVPPVLVVSHPIRAAGLIEALAAQA-GRRVSVVRQ 400

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389
            QG +R  +E A   A  S  ++LS + S Q   +   +   +        R+E +D SH
Sbjct: 401 PQGARRAWLEMAEKGAELSLARRLSEQGSQQARTRALAETIGIDLEDLATLRVECFDISH 460

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G +     VV   +     +YR++N+    +   DD A MR VL RR+ ++++     
Sbjct: 461 TAGEATQASCVVFHSHAMQNGEYRRYNIQG--ITPGDDYAAMRQVLTRRYQKVVEQAAE- 517

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                      P  P +V++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+E 
Sbjct: 518 ---------DTPDMPHIVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 567

Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                    L L      L  + ++RDEAHRFAIT  R +R K    S L+EI GIG  R
Sbjct: 568 LVFADERPSLELGQGSAALMLVAQIRDEAHRFAITGMRAKRAKTRNTSRLEEIEGIGAKR 627

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S E L ++EGIS+ +A +IY   H
Sbjct: 628 RQRLLARFGGLRGVMAASVEELTTVEGISQTLAEEIYRQLH 668


>gi|54309405|ref|YP_130425.1| excinuclease ABC subunit C [Photobacterium profundum SS9]
 gi|81399352|sp|Q6LQ03|UVRC_PHOPR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|46913841|emb|CAG20623.1| putative excinuclease ABC, subunit C [Photobacterium profundum SS9]
          Length = 616

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 212/618 (34%), Positives = 333/618 (53%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY   N    +   ++  I  +  TV
Sbjct: 16  LKTVTHQPGVYRMYDAVGDVIYVGKAKDLKKRLSSYFRINVAGEKTRALVKNICKVDVTV 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK   P++N+LLRDDKS+PYI +++ H  P L  HR +   +G YF
Sbjct: 76  THTETEALILEHNYIKLYLPKYNVLLRDDKSYPYIFLSNHH-HPRLSIHRGTKKRKGEYF 134

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV ++++ +Q+ F +R C DSV+ +R+RPCL++QI RC  PC  E I+ + Y 
Sbjct: 135 GPYPDAGAVRESLHLMQKLFPIRQCEDSVYANRSRPCLMYQIGRCLAPCVKELITEKDYE 194

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V  A+ FL G +  +   +   M QA+   ++E A   RD++ AL  +Q      ++ 
Sbjct: 195 DQVSFARLFLQGKDRQVIASLVEKMEQASQSLNFEQAATFRDQIQALRRVQEQQFVSHDS 254

Query: 242 MDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            D      + H   +ACI   +   G+  G+ ++F K  S++   ++LS F+ QFY ++ 
Sbjct: 255 EDDLDVIGIAHQNGMACIHALYIRQGKILGSRSYFPKMPSDAELTEVLSSFITQFYLNQA 314

Query: 299 ----CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                P  I+L E   ++ +++  +     G K+++ V  +G + + ++ A  NA  + T
Sbjct: 315 EGRVIPSVIILGENLGDDAAVITETLSDIAGRKIELKVNPRGNRARYLKLAQTNAMTALT 374

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            KLS +++      +  K   L  I  R+E +D SH MG   V   VV  + G  K  YR
Sbjct: 375 SKLSHKMTIHERFSELRKALNLETIS-RMECFDISHTMGEKTVASCVVFNQEGPFKQDYR 433

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M  VLERR+ + ++ E+                PD++ +DGG+
Sbjct: 434 RYNI--TGITGGDDYAAMGQVLERRYGKPMEPEK---------------IPDIIFIDGGR 476

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQLS A  V+K        +  +I IAKG  R AG+E      GE   L    P L+ IQ
Sbjct: 477 GQLSRAYNVVKPFMDEWPKQPLLIGIAKGVTRKAGLETLIFITGEEFSLPSDSPALHLIQ 536

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI+ HR +R K    S L+++ GIGP R++ LL+  G +  + R+S E +A
Sbjct: 537 HIRDESHNHAISGHRAQRAKVRKRSALEDVEGIGPKRRQALLKFMGGLHELKRASREEIA 596

Query: 591 SIEGISKKIACKIYNHFH 608
            + GISK +A KIY+   
Sbjct: 597 KVPGISKALAEKIYDALQ 614


>gi|73541931|ref|YP_296451.1| excinuclease ABC subunit C [Ralstonia eutropha JMP134]
 gi|90111759|sp|Q46Z26|UVRC_RALEJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|72119344|gb|AAZ61607.1| Excinuclease ABC subunit C [Ralstonia eutropha JMP134]
          Length = 663

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 210/641 (32%), Positives = 324/641 (50%), Gaps = 43/641 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+ +D AG VLYVGKA NL+KR+ SY +    + RI  M+++I  I  TV  
Sbjct: 29  RLPGLPGVYRYIDSAGNVLYVGKARNLKKRVSSYFNKTQLSPRIAMMVAKIARIDTTVVR 88

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK L PR+NIL RDDKS+P++ +T  H+ P +  +R ++  +  YFGP
Sbjct: 89  TEAEALLLENNLIKALAPRYNILFRDDKSYPFLKLT-GHRFPRMAYYRGATDRKHQYFGP 147

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV +++  LQ+ F LR+C D+VF +RTRPCLL QI RC+GPC G IS   Y   V
Sbjct: 148 FPSAYAVRESMQILQKVFQLRTCEDTVFNNRTRPCLLHQIHRCTGPCVGAISEADYARDV 207

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS----IYN 240
             A  FL G    + E +   M +  ++ ++E A   RD++AALS +             
Sbjct: 208 GNAASFLQGRETEVLEGLQSKMEEHAMQLEFEQAAAVRDQIAALSTVLKRQAVEEVGQAR 267

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-----STNAQILS-------- 287
            +D  ++      AC+       G++ G   +F     E         +           
Sbjct: 268 DIDVLAVAVEGGRACVNLAMVRGGRHLGDKAYFPAHADEAAMIVEDGDEGAEGGETEPAP 327

Query: 288 ---------------YFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
                           F+ Q Y D+  P  I++S   ++ +LLE            +   
Sbjct: 328 AVPLGVERIAARVLSAFMVQHYLDQAPPPIIVVSHVPDDAALLEALALHAGRKIA-LVRQ 386

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDNSH 389
            QG+++  +E A   A  +  ++LS + S +   +   +   +        R+E +D SH
Sbjct: 387 PQGQRKAWLEMAQQGAALALARRLSEQGSQEARTRALAETIGIDLEDLALLRVECFDISH 446

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G +     VV   +     +YR++N+    +   DD A MR VL RR+ +L++  +  
Sbjct: 447 TAGEATQASCVVFHHHDMQNGEYRRYNIQD--ITPGDDYAAMRQVLTRRYQKLVELMQE- 503

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                    +    P VV++DGGKGQ+  A+ V ++L ++  + ++ +AKG  R  G+E 
Sbjct: 504 QGGLDPAGEASSPMPHVVLIDGGKGQVEVARQVFEELGLDIGL-LVGVAKGEGRKVGLET 562

Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R RR KA   S L+EI G+G  R
Sbjct: 563 LVFADGRPSLELGQGSAALMLVAQIRDEAHRFAITGMRARRAKARTTSRLEEIEGVGARR 622

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS++GIS+ +A +IY   H
Sbjct: 623 RQKLLTRFGGLRGVMAASIDELASVDGISRGLAEEIYRQLH 663


>gi|300781129|ref|ZP_07090983.1| excision endonuclease subunit UvrC [Corynebacterium genitalium ATCC
           33030]
 gi|300532836|gb|EFK53897.1| excision endonuclease subunit UvrC [Corynebacterium genitalium ATCC
           33030]
          Length = 693

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 192/687 (27%), Positives = 306/687 (44%), Gaps = 82/687 (11%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D AGRV+YVGKA NL+ R+ +Y         R   M+     + +TV 
Sbjct: 13  TIPTDPGVYKFRDGAGRVVYVGKAKNLRSRLNNYFQPPQTLHPRTRQMVFTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IKR  P FN++ RDDK++P + ++   K P  + +R        YFG
Sbjct: 73  ASEVEALQLEYTWIKRYDPWFNVMYRDDKTYPMLAVSVGEKYPRAFFYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           PF+   AV +T++ L R F +R+C++ V+       RPCLL  I +CS PC   +S  +Y
Sbjct: 133 PFSHAWAVRETLDLLTRVFPIRTCSNGVYNRHEQLGRPCLLGYIDKCSAPCVSRVSEPEY 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            + V+    F+SG    + + +   M +A+   ++E A   RD L A++ +      +  
Sbjct: 193 DDIVNGFMGFMSGRTDAVVKGLTSQMMEASENLEFEKAARLRDDLGAVNKVMEKQTVVLS 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--------------NA 283
                D  +   ++  A +Q      G+ R    + ++   +                  
Sbjct: 253 IDTDADVIAFDTDELEAAVQIFTVRDGRIRSQRGWVVEKTGDEPGSMERLDEGQDDPALP 312

Query: 284 QILSYFLRQFYTDK------------------------------------PCPENILLSE 307
            ++  FL Q+Y+D                                     P P  IL+  
Sbjct: 313 VLMQNFLVQYYSDAVERMEQEQAEDERLAAKKVRRRGVDQESRAQVKPPMPVPREILVEV 372

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQ 363
              E    +    K  G  V   VP++G+K+ ++E    NA  S  Q          +  
Sbjct: 373 MPAEAEETQALLEKLRGGPVSFRVPQRGDKKSLMETVHRNAKESLRQHKLKRVGDLTARS 432

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             L+D      +   P RIE  D SHI G   V  +VV  +    K  YR++ +      
Sbjct: 433 QALQDIQDALMMDEAPLRIECTDISHIQGTDVVASLVVFEDGLPKKADYRRYRIKEAAGD 492

Query: 424 TQ-DDCAMMRMVLERRFSQLIKN-------------EENLNFHPKKQEYSFPSWPDVVIL 469
            + DD   +  V  RRF +  ++             +E  +         F   P + I+
Sbjct: 493 GRSDDVGSIAEVTRRRFKRHNEDKLANPEESDQVFDDEEDSAVESTGNKRFAYPPQLFIV 552

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGK Q++AAQ V  +L + + +T+I +AK  +     E +     E L+L      +Y 
Sbjct: 553 DGGKPQVNAAQAVFDELGIVD-VTLIGLAKRLE-----EVWVPDDDEPLILPRNSEGMYL 606

Query: 530 IQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q++RDEAHRFAIT HR++R K    S LD I G+GP R+  L++ FG+VK +  +S E 
Sbjct: 607 LQQIRDEAHRFAITYHRQQRSKRMRASALDGIPGLGPARRSDLVKHFGSVKKLKAASAEE 666

Query: 589 LASIEGISKKIACKIYNHFHKNTSHTP 615
           +  + GI  K+A  ++ H  K+ S + 
Sbjct: 667 IEEVPGIGPKLAETVWQHLRKDPSSSE 693


>gi|307256305|ref|ZP_07538088.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306865131|gb|EFM97031.1| UvrABC system protein C [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 610

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 198/618 (32%), Positives = 330/618 (53%), Gaps = 33/618 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    ++YVGKA +L+KR+ SY  S   + +   +++ I+++  T+T 
Sbjct: 10  DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHVETTITH 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +P++N+LLRDDKS+PYIL+T KH+ P +   R S  + G YFGP
Sbjct: 70  SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKVAGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y   
Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V+  + FL G +  + E + + M  A  + D+E+A   RD++ ++  +Q          +
Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMENAAQELDFEAAARFRDQIQSVRAVQEKQFVSNERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+   F   G+  G  ++F K  + +  +++   F+ QFY      
Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLSELADTFVGQFYLQMNQH 308

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I++ +   E T+L  +   +            +G+K + +  A  NA  + T +
Sbjct: 309 RTIPNQIIIDQSLSEVTALANVLSEQAGHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  +   +           L  I  R+E +D SH MG   V   VV  +NG +K+ YR+F
Sbjct: 369 LKQDTHIRQRYDSLKALLNLAEIK-RMECFDISHTMGNQTVASCVVFDKNGPLKSDYRRF 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A +   L +R+ + ++ E+                PD++ +DGGKGQ
Sbjct: 428 NIEG--ITGGDDYAAIEQALLKRYDRNLEEEK---------------IPDIIFIDGGKGQ 470

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A      LNV   + +  ++ +AKG +R AG+E   + K  + + L    P L+ IQ
Sbjct: 471 LNRALETFTSLNVSWDKRKPLLVGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + 
Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 590

Query: 591 SIEGISKKIACKIYNHFH 608
           S+ GISK++A  I++   
Sbjct: 591 SVPGISKQLAEVIFDTLQ 608


>gi|262171753|ref|ZP_06039431.1| excinuclease ABC subunit C [Vibrio mimicus MB-451]
 gi|261892829|gb|EEY38815.1| excinuclease ABC subunit C [Vibrio mimicus MB-451]
          Length = 610

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 207/619 (33%), Positives = 324/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TV
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDDSYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E V+  + FL G ++ +   +   M  A+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 EIVNYLRLFLQGKDNQVLSILVEKMELASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296
               D         +ACI       G+  G+ + F K  +E++  ++   FL Q+Y    
Sbjct: 250 LEDQDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPAETSQIEVFESFLSQYYLSHS 309

Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +  P  I+L++   EET  L+ +  +  G KV   V   G + + +  A  NA  + T
Sbjct: 310 EARSIPTRIILNQGLTEETEALQTAITELAGRKVTFHVNPTGTRGRYLRLANTNALTAIT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K   ++  +  I  R+E +D SH MG S +   VV  + G VK +YR
Sbjct: 370 TKINHKMTIGQRFKALQEELGMDVIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M  VLERR+S+ +                    PD++ +DGGK
Sbjct: 429 RYNITD--ITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++     +      II IAKG  R  G+E      G+   L    P L+ IQ
Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 592 KVPGISHALAENIYQALKQ 610


>gi|78047815|ref|YP_363990.1| excinuclease ABC subunit C [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|90111762|sp|Q3BTC3|UVRC_XANC5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78036245|emb|CAJ23936.1| excinuclease ABC subunit C [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 619

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/607 (38%), Positives = 339/607 (55%), Gaps = 21/607 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T + + P +  HR    +QG YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REQWPRIALHRGPRAVQGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V  V +T++ + + F LRSC DSVFR+R+RPCL +QI RCSGPC   +++  Y E V
Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSGPCVDLVAAPDYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I  +M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMHSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     + AC+    F  G+N GT +FF KT+ E +  +IL  F+ Q+Y +   P  
Sbjct: 256 DVLACATQSSQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  E  L+E +      +KV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDREIPEAELIEAALSTAAEHKVALKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +   +   L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+  + +
Sbjct: 376 HARSEALREMLGLAEPVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR  +ERRF + ++                   PDV+++DGG GQL+ AQ  
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAQAA 479

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L VEN + ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAI
Sbjct: 480 LADLGVEN-VLLVGVAKGEERRAGHEALIMADGRELRPGAASPALQFIQQVRDEAHRFAI 538

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR RR KA   S L++I GIGP R+  LL+ FG +  +  +    +A +EG++  +A 
Sbjct: 539 TGHRGRRHKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVEGVNAALAA 598

Query: 602 KIYNHFH 608
           +IY + H
Sbjct: 599 RIYANLH 605


>gi|167586643|ref|ZP_02379031.1| Excinuclease ABC, C subunit [Burkholderia ubonensis Bu]
          Length = 670

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 210/657 (31%), Positives = 331/657 (50%), Gaps = 58/657 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D AG VLYVGKA +L+KR+ SY      + RI  M+++I  +  TVT 
Sbjct: 19  QLPHLPGVYRYYDAAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARVETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGAVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G I+ E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAIAEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHGFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS----------EST---------- 281
            D  ++       C+       G++ G   +F               +            
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLDDEAEPAVEALPG 317

Query: 282 ----------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGY 325
                            +++L  F+ Q Y     P  +++S       LL++   +Q G+
Sbjct: 318 QPADDAGGARNAQASVESEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLDL-LSEQAGH 376

Query: 326 KVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRI 382
           KV +    QG++R  +  A  NA  +  + LS + S Q   +      +  +      RI
Sbjct: 377 KVSLVRQPQGQRRAWLSMAEQNAALALARLLSEQGSQQARTRALADTLSYENDDLAHLRI 436

Query: 383 EIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQL 442
           E +D SH MG +     VV   +     +YR++N+    +   DD A MR VL RR+ ++
Sbjct: 437 ECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLTRRYEKM 494

Query: 443 IK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRIT 493
           ++         +   ++    +Q  +    P++V++DGGKGQ+  A+ V  +L ++  + 
Sbjct: 495 VEQAAQAAAADDAAGIDGETTRQAEAASLLPNIVLIDGGKGQVEIARQVFTELGLDTSM- 553

Query: 494 IISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA 552
           ++ +AKG  R  G+E      G   L L      L  + ++RDEAHRFAIT  R +R KA
Sbjct: 554 LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKA 613

Query: 553 A-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
              S L+E+ G+G  R++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 614 RQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 670


>gi|296135586|ref|YP_003642828.1| excinuclease ABC, C subunit [Thiomonas intermedia K12]
 gi|295795708|gb|ADG30498.1| excinuclease ABC, C subunit [Thiomonas intermedia K12]
          Length = 647

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 198/631 (31%), Positives = 317/631 (50%), Gaps = 34/631 (5%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+     G +LYVGKA +L+KR+ SY   ++   RI  M+S+I+ +  TVT TE
Sbjct: 22  PHLPGVYRYFAADGSLLYVGKARDLKKRVSSYFQKDHGGTRIGLMVSRIHRLDTTVTRTE 81

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLE N+IK   PR+NIL RDDKS+PY+ IT  H+ P +  +R ++  +  YFGP+ 
Sbjct: 82  AEALLLENNLIKTQHPRYNILFRDDKSYPYLQITTAHEYPRVAYYRGATDRKQQYFGPYP 141

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           +  +V+++I  LQ+ F LR+C D+VF +R+RPCLL QI RC+ PC G+IS+  Y   V  
Sbjct: 142 NAWSVKESIAVLQKVFQLRTCEDTVFSNRSRPCLLHQIHRCTAPCVGKISAADYARDVQH 201

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A +FL G +  +   +   M   +    +E A + RD++AALS +             +D
Sbjct: 202 AVRFLRGDHGVVMGDLQLQMQSLSDALRFEEAAVLRDQIAALSGVLQQQSMEVGSAEDVD 261

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-----DSESTNAQIL------------ 286
             ++      AC+       G++ G   +F        +     A  +            
Sbjct: 262 ILAVALRGGRACVNLAMVRGGRHLGDRAYFPSQVQAALELGDDLADGVAPEQGAPGQAAQ 321

Query: 287 ---SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
                F+ Q Y     P  ++     E   L  +   +  G++++     +G++R  +E 
Sbjct: 322 RVLQAFVAQHYLQMAPPPVLVCDLPVEPELLDALG--EHAGHRMQQVTQPRGQRRDWLEM 379

Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIMGCSAVGCMV 400
           A   A  + T+ L+ E S +       +   L        R E +D SH  G +     V
Sbjct: 380 AQKGAQIALTRLLAEEGSQRERTFALAQALGLDAEQAEGLRAECFDISHTAGEATQASCV 439

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460
           V  E+    +QYR+F ++   +   DD A MR VL RR+ ++ + +         +    
Sbjct: 440 VYAEHAMQPSQYRRFRIND--ITPGDDYAAMRQVLTRRYKRVAEAQAQGALAADGETPGD 497

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LV 519
              PD+V++DGG+GQ++ A+ V  +L ++  + I+ + KG  R  G+E+     G   L 
Sbjct: 498 ARLPDLVLVDGGRGQVTMAREVFTELGLDLSV-IVGVEKGEGRKVGLEELVFADGRPKLT 556

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGT 577
           L      L  + ++RDEAHRFAIT  R  R K     S L++I GIGP R+  LL  FG 
Sbjct: 557 LPADSAALMLVAQIRDEAHRFAITGMRAARAKVRTGGSRLEDIPGIGPKRRAKLLARFGG 616

Query: 578 VKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ +  +S + L +++GIS+++A  +Y   H
Sbjct: 617 IRGVEAASEDDLMTVDGISRELAHLLYKALH 647


>gi|134295173|ref|YP_001118908.1| excinuclease ABC subunit C [Burkholderia vietnamiensis G4]
 gi|189038031|sp|A4JCS0|UVRC_BURVG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|134138330|gb|ABO54073.1| Excinuclease ABC subunit C [Burkholderia vietnamiensis G4]
          Length = 683

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 214/670 (31%), Positives = 329/670 (49%), Gaps = 71/670 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDATGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R S   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G I+ + Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAITEDDYAIDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMNELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS----------------------- 278
           +D  ++       C+       G++ G   +F                            
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGDEADGVDDAAAA 317

Query: 279 --------------------------ESTNAQILSYFLRQFYTDKPCPENILLSEEAEET 312
                                      S  A++L  F+ Q Y     P  +++S      
Sbjct: 318 MPDQPVEGEGDGDGGAAARVAGAGAGASVEAEVLDAFISQHYLGNRVPPVLVVSHAPASR 377

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK 372
            LLE+   +Q G+KV +    QG++R  +  A  NA  +  + LS + S Q   +   + 
Sbjct: 378 DLLEL-LSEQAGHKVSLVRQPQGQRRAWLTMAEQNARIALARLLSEQGSQQARTRALAET 436

Query: 373 FALPHIP---KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429
             L        RIE +D SH MG +     VV   +     +YR++N+    +   DD A
Sbjct: 437 LGLECDDLATLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--AGITPGDDYA 494

Query: 430 MMRMVLERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            MR VL RR+ ++++             ++    +Q  +    P++V++DGGKGQ+  A+
Sbjct: 495 AMRQVLTRRYEKMVELAAQAAAADAATGIDGESTRQAEASSLLPNIVLIDGGKGQVEIAR 554

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHR 539
            V  +L ++  + ++ +AKG  R  G+E      G   L L      L  + ++RDEAHR
Sbjct: 555 QVFTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMLVAQIRDEAHR 613

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT  R +R KA   S L+E++G+G  R++ LL  FG ++ +  +S E LAS++GIS  
Sbjct: 614 FAITGMRAKRAKARQTSRLEELDGVGAKRRQRLLARFGGLRGVVAASVEELASVDGISHA 673

Query: 599 IACKIYNHFH 608
           +A +IY   H
Sbjct: 674 LAEQIYKQLH 683


>gi|146312146|ref|YP_001177220.1| excinuclease ABC subunit C [Enterobacter sp. 638]
 gi|145319022|gb|ABP61169.1| Excinuclease ABC subunit C [Enterobacter sp. 638]
          Length = 607

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 213/618 (34%), Positives = 332/618 (53%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY  +N  + +   +++QI  I  TV
Sbjct: 8   LKTVTSQPGVYRMYDAGETVIYVGKAKDLKKRLSSYFRNNLASRKTEALVAQIQQIDVTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 68  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 127 GPFPNGYAVRETLALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYA 186

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V   + FL+G +  +  ++   M +A+    +E A   RD++ A+  +        N 
Sbjct: 187 QQVEYVRLFLAGKDDQVLTQLIERMEKASQLLAFEEAARIRDQIQAVRRVTEKQFVSNNG 246

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
              D   +  +  LAC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 247 DDLDVIGVSFDAGLACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 306

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G +V +    +G++ + ++ A  NA  + T K
Sbjct: 307 MRTLPSEILLDFNLNDKTLLADSLSELAGRRVNVQTKPRGDRARYLKLARTNAATALTTK 366

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 367 LSQQSTIHQRLLALATLLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 425

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+I+DGGKGQ
Sbjct: 426 NI--TGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVIIIDGGKGQ 468

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L  A+ V  +L+V   ++   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 469 LGQAKQVFAELDVPWDKHHPLMLGVAKGTDRKAGLETLFFEPEGEGFNLPPDSPALHVIQ 528

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 529 HIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLLNASVEEIA 588

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS+ +A KIY    
Sbjct: 589 KVPGISQGLAEKIYYSLK 606


>gi|332993140|gb|AEF03195.1| excinuclease ABC subunit C [Alteromonas sp. SN2]
          Length = 584

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 201/601 (33%), Positives = 320/601 (53%), Gaps = 25/601 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA NL+KR+ SY   N    +   ++ QI N+  TV  +E EA LLE 
Sbjct: 1   MYNAQEEVIYVGKAKNLKKRVSSYFRMNVDNAKTRSLVLQIANMDVTVVNSETEAFLLEN 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+ KPR+N+++RDDKS+P+I ++  H+ P L  HR     +G YFGP+ S  AV ++
Sbjct: 61  NFIKKYKPRYNVVMRDDKSYPFIFLS-DHQHPRLSFHRGPQKKKGEYFGPYPSAGAVRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193
           + S+QR F +R C DS +R R+RPCL +Q++RCS PC    +S E+Y E +  A+ FL G
Sbjct: 120 LRSMQRIFPVRQCEDSYYRARSRPCLQYQMQRCSAPCVEGYVSDEEYNEQIDLARLFLKG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRMDCFSLYHNK 251
            N  +   +   M +A+   ++E+A  +RD++  L  +Q         + MD F      
Sbjct: 180 KNQQVIGTLVDKMEKASEALNFEAAARYRDQINTLRKVQERQWVAGTQDEMDVFGFAVKG 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKPCPENILLSEEA 309
           N+ACIQ  F    Q  G+  FF K  + +   +I   FL QFY   +K  P+ ++ +   
Sbjct: 240 NMACIQVMFIRDSQLLGSKAFFPKVPNTADEQEIFESFLLQFYLAGNKLIPKQMVFASAL 299

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369
            +   +      + GY+V      + EKR+ +E A  NA  +   +   + S      D 
Sbjct: 300 SDEDAIADLLSGEAGYRVNFFKGAREEKRRYLELAQANAETALETQYGEQKSVFARYLDL 359

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429
                L    +R+E +D SH  G   V   VV    G +K+ YR++N+    +   DD A
Sbjct: 360 ETALELDAPLQRMECFDISHTSGEQTVASCVVFNREGPLKSDYRRYNIEG--ITPGDDYA 417

Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
            M   L+RR+  + + ++                PD++++DGGKGQLS A+   +    +
Sbjct: 418 AMAQALKRRYKSVKEVQK---------------IPDLLLIDGGKGQLSQAETFFEDWPHD 462

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
            +  ++ +AKG  R  G+E   +    + + ++   P L+ IQ +RDE+HRFAIT HR R
Sbjct: 463 KKPMLLGVAKGTTRKPGLETIILADSHDTVPMDSHSPALHLIQHIRDESHRFAITGHRNR 522

Query: 549 RKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R+K    S L+ I G+G  R++ LL+  G ++ + ++S + +AS+ GISK++A  IY+H 
Sbjct: 523 RQKVKTTSSLETIPGVGAKRRQTLLKYMGGLQGLKKASKDEIASVPGISKELADTIYDHL 582

Query: 608 H 608
           H
Sbjct: 583 H 583


>gi|325963185|ref|YP_004241091.1| excinuclease ABC subunit C [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469272|gb|ADX72957.1| Excinuclease ABC subunit C [Arthrobacter phenanthrenivorans Sphe3]
          Length = 665

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/646 (30%), Positives = 313/646 (48%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  GRV+YVGKA +L+ R+ SY  +      +   M+   +++ +TV 
Sbjct: 13  EIPTNPGVYRFRDQHGRVIYVGKAKSLRSRLNSYFANPAGLLPKTYAMVHAASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+E+L LE   IK  KPRFN++ RDDK++PY+ +T   K P +   R        YFG
Sbjct: 73  GSELESLQLEYTWIKEFKPRFNVVFRDDKTYPYLAVTVGEKYPRVQVMRGDKKKGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T+++L R F +RSC+  VF+      RPCLL  I +CS PC G IS E +
Sbjct: 133 PYT-AGAIRETMDTLLRVFPVRSCSAGVFKRAEASGRPCLLGYIDKCSAPCVGRISPEDH 191

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F+ G       K+ + M +A  + DYE A   RD + AL  +   N  +  
Sbjct: 192 RALAEDFCAFMGGEAKRFIAKLEKQMAEAVAELDYERAARLRDDITALRKVFERNAVVLA 251

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L+ ++  A +Q      G+ RG   + ++   +ST   ++ + L+Q Y + 
Sbjct: 252 EETDADIFALHEDELEAAVQVFHVRGGRIRGQRGWVVEKVEDSTTPDLVEHLLQQVYGED 311

Query: 298 -----PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+         L        G KV I VP++G+K  ++     NA  + 
Sbjct: 312 GDSHGRLPREVLVPVAPSNAEELAQWLSGMRGAKVDIRVPQRGDKAALMSTVRENAEHAL 371

Query: 353 TQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
               +            L++  +   LP    RIE +D SH+ G + V  MVVV +    
Sbjct: 372 KLHKTRRAGDLTVRSQALQELQEALDLPVPLLRIECFDVSHVQGTNVVASMVVVEDGLPK 431

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN-------------------L 449
           K+ YRKF++        DD A M  VL RRF + ++++                     L
Sbjct: 432 KSDYRKFSVTGA--AASDDTAAMHDVLTRRFRRYLEDKSAQVDDAALAGEPEEFGEGSLL 489

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           +         F   P++V++DGGK Q++AA   L  L +++ + ++ +AK  +     E 
Sbjct: 490 DTTTPAPRAKFAYPPNLVVVDGGKPQVNAAARALADLGIDD-VYVVGLAKRLE-----EV 543

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRK 568
           +       ++L      LY +QR+RDEAHRFAI+ HR++R KA   S LD + G+G  ++
Sbjct: 544 WLPDSDFPVILPRTSQGLYLLQRIRDEAHRFAISFHRQKRGKAMTVSALDGVPGLGASKR 603

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           + LL  FG+VK +  ++   L+  +GI   +A  I NHF  +    
Sbjct: 604 KALLAHFGSVKGVKAATAAELSQAKGIGPALASAIVNHFAPDGPEP 649


>gi|328760529|gb|EGF74097.1| excinuclease ABC subunit C [Propionibacterium acnes HL099PA1]
          Length = 672

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 190/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 13  TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 73  QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T+ +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+S+ +
Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   E   F++G    + +++   M +A+   ++E A + RD L ALS     N  +  
Sbjct: 193 REIADEFCDFMAGRTTKIVKRLEYQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +++S E     ++      + G  V+I VP++G+K  +++  
Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P RIE YD SHI G + VG MV
Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F++     +  DD A M  VL RR  +LI++ +             
Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   +   ++L      LY +QRLRDEAHRFAIT HR +R KA   S LD ++G+G  
Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R++ L+  FG+V+ + +++ + +  + G   K+A ++     ++  
Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651


>gi|93007140|ref|YP_581577.1| excinuclease ABC, C subunit [Psychrobacter cryohalolentis K5]
 gi|92394818|gb|ABE76093.1| Excinuclease ABC subunit C [Psychrobacter cryohalolentis K5]
          Length = 645

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 199/614 (32%), Positives = 314/614 (51%), Gaps = 29/614 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+ML   G +LYVGKA +L+ R+ SY        +   ++++I+NI   +T
Sbjct: 53  QRLPNLPGVYKMLGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVARIHNIETIIT 112

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSYF 122
            +E EALLLE N+IK  +P +N+LLRDDKS+ Y+ I+     P L   R   +  +G +F
Sbjct: 113 RSETEALLLEQNLIKEYRPPYNVLLRDDKSYLYVFISADKPYPRLAYGRGKGNHQKGRFF 172

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S  A ++T+  +Q+ F +R C ++ F+ R RPCL +QIKRC  PC G +S E+Y E
Sbjct: 173 GPFPSAHAAKETLVLMQKMFQMRQCTNTFFKQRKRPCLEYQIKRCRAPCVGLVSPEEYSE 232

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            V+   +FL G + ++   +   M  +  + D+E A+ +RD+L+ L  +Q          
Sbjct: 233 DVNNTIRFLKGDSSDIHTALIEKMEASAEELDFEKAVFYRDQLSMLREVQAKQAVYTVQG 292

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298
             D  ++     + C+       G+  G   +F   DS    A  LS F+  FY      
Sbjct: 293 EADVIAIASQGGMTCVNVLTVRGGRVLGGKNYFPDVDSSEPLADNLSAFITSFYFQVTDD 352

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I+LS+E  +   +  +    +G KV I    +  + + ++ A +N + +   KL  
Sbjct: 353 LPAEIILSDELPDQLAVSEALATHFGSKVVIKTSVREHRAEWLDLAKLNTNNALKTKLGD 412

Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
            +                      RIE +D SH MG + +G  VV  + G  +  YR++ 
Sbjct: 413 YLELHARFGALKDVLTEVTDRTIDRIECFDISHTMGEATIGSCVVFDQGGSRRRDYRQYA 472

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +H   +   DD A M+ VL RR+ +                      PD++++DGGKGQL
Sbjct: 473 IHD--IVGGDDYAAMKQVLTRRYKK-------------------QPLPDLLLIDGGKGQL 511

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
             A+ VL +L +     +IS+AKG  R AG+E       E L L M    L+ +  +RDE
Sbjct: 512 GIAKEVLTELGILGDTLLISVAKGEGRKAGLEVLHFIDHEPLDLPMDSKALHLLMHIRDE 571

Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT HRK+R K+ + S L+ I G+G  R+R LL  FG ++ +  +S + LA ++GI
Sbjct: 572 AHRFAITAHRKKRDKRRSSSVLEVIPGLGEKRRRDLLNHFGGMQQLLGASQQELAGVQGI 631

Query: 596 SKKIACKIYNHFHK 609
              +A  +Y   H+
Sbjct: 632 GPVLAKTVYKVLHE 645


>gi|226326298|ref|ZP_03801816.1| hypothetical protein PROPEN_00146 [Proteus penneri ATCC 35198]
 gi|225205249|gb|EEG87603.1| hypothetical protein PROPEN_00146 [Proteus penneri ATCC 35198]
          Length = 607

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 208/610 (34%), Positives = 338/610 (55%), Gaps = 31/610 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++ + PGVY+M D    V+YVGKA +L+KR+ SY  +  ++ +   ++  I NI  T+T 
Sbjct: 13  RITDKPGVYRMYDATDTVIYVGKAKDLKKRLSSYFRTQVNSRKTEALVKCIANIDVTITH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE + I+R +PR+N+LLRDDKS+PYI ++   K P +  +R +   +G YFGP
Sbjct: 73  TETEALLLEHSYIQRYQPRYNVLLRDDKSYPYIYLS-GDKHPRIASYRGAKHAKGEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           F +  AV +T+  +Q+ F +R C DSV+R+R+RPCL +QI RC  PC    +S E+Y + 
Sbjct: 132 FPNSFAVRETLALMQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLAPCVKGYVSDEEYAQQ 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
           V+  + FLSG +  + + + + M +A+ +  +E A   RD++ A+  +          + 
Sbjct: 192 VNYVRLFLSGDDTQVIDGLVKRMEEASQELRFEEAARIRDQIQAVRQVTEKQFVANIGDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297
           +D  S+  N  +AC+   FF  G+  G+ ++F K  + ++  +++  F+ QFY      +
Sbjct: 252 LDVISVAFNGAIACVYVLFFRQGKVLGSRSYFPKVPANTSIDEVVQTFIGQFYLQGSAIR 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  ILL    E+  +L  S     G K++I    +G++ + ++ A  NA  +   K  
Sbjct: 312 TLPTEILLDFNLEDKVILSESISSIAGRKIQIQTKPRGDRARYLKLARTNAATALASKQV 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + +             +  I  R+E +D SH MG   V   VV   NG +K++YR++N+
Sbjct: 372 EQSTISQRYTSLMSLLDMKEIK-RMECFDISHTMGEQTVASCVVFDMNGPLKSEYRRYNI 430

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
             + +   DD A M  VL RR+ + +++ +                PD++ +DGGKGQL+
Sbjct: 431 --SGITPGDDYAAMNQVLTRRYGKPLEDSK---------------VPDIIFIDGGKGQLA 473

Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRL 533
            A  V   LNV   ++   +I +AKG  R AG+E  FFV +GE + L    P L+ IQ +
Sbjct: 474 QAIEVFDSLNVNWDKSHPKLIGVAKGSDRKAGLETLFFVPEGEGMALPSDSPALHLIQHI 533

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HR AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A +
Sbjct: 534 RDESHRHAITGHRQRRAKVKNTSSLESIEGVGPKRRQMLLKYMGGLQALRDASVEEIAKV 593

Query: 593 EGISKKIACK 602
             IS  +A K
Sbjct: 594 PTISTALAEK 603


>gi|255282575|ref|ZP_05347130.1| excinuclease ABC subunit C [Bryantella formatexigens DSM 14469]
 gi|255266868|gb|EET60073.1| excinuclease ABC subunit C [Bryantella formatexigens DSM 14469]
          Length = 612

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 205/619 (33%), Positives = 332/619 (53%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N   +I  M+++I+   +
Sbjct: 7   ELKKLPAKPGVYIMHDEKDAIIYVGKAVSLKNRVRQYFQSSRNKGVKIEQMVTKISRFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L+DDK++P+I +T     P +   R     +  
Sbjct: 67  IVTDSELEALVLECNLIKEHRPKYNTMLKDDKTYPFIKVTVNEPFPRVLFSRTMKKDKSR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  + + + LR+C+  + R   + RPCL + IK+C  PC G +S E
Sbjct: 127 YFGPYTSAGAVKDTIELINKLYKLRTCSRVLPRDTGKERPCLNYHIKQCQAPCQGYVSQE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + V +A +FL+G    + + +   MN+A  + D+E+AI  R+ LA++  +       
Sbjct: 187 EYAKRVAQAVEFLNGNYKPVLKMLEERMNEAAERLDFEAAIEQRELLASVKQVAQKQKIT 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  +   A +Q  F   G+  G   F+L+     T   IL  FL+QFY+
Sbjct: 247 SGDGEDKDVIALAADDRDAVVQVFFVRSGRLIGRDHFYLRVAPHDTPGAILDSFLKQFYS 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  P  I+L EE E+  ++E    K+ G +V + VPK+G K K++E A  NA     +
Sbjct: 307 GTPFIPHEIMLQEEIEDKEIIEEWLTKRRGGRVYLRVPKKGTKEKLVELAAQNARMVLTQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      L ++  R+E +D S+I G  +VG M+V  +     +
Sbjct: 367 DREKIKREEGRTIGAMKEIASLLGLENVV-RVEAFDISNISGFESVGSMIVYEKGRPKTS 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    VK  DD A M  VL RRF+  +   E        Q  SF  +PD++++D
Sbjct: 426 DYRKFKIKT--VKGPDDYASMEEVLGRRFAHGLAEREE-----NAQFGSFSRFPDLIMMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL +L+++  I +  + K              + E + ++        I
Sbjct: 479 GGKGQVNVALRVLDELHLD--IPVCGMVKDDNHRTRG---LYYQNEEVPIDRSSEGFRLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR  R K   +S LD+I GIG  R++ LL+ F +++ I  +S E L
Sbjct: 534 TRIQDEAHRFAIEYHRSLRSKQQVHSVLDDIEGIGETRRKALLRRFKSLEAIRDASVEEL 593

Query: 590 ASIEGISKKIACKIYNHFH 608
           AS E ++++ A K+Y+ FH
Sbjct: 594 ASTETMNRQAAQKVYDFFH 612


>gi|327330672|gb|EGE72418.1| excinuclease ABC subunit C [Propionibacterium acnes HL097PA1]
          Length = 672

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 191/646 (29%), Positives = 316/646 (48%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 13  TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 73  QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+   + +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+SE +
Sbjct: 133 PFGQAWAIRDAVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSEAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   E   F++G    + +++   M +A+   ++E A + RD L ALS     N  +  
Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMEIFLTQLYGVN 312

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +L+S E     ++      + G  V+I VP++G+K  +++  
Sbjct: 313 ASDGQVRDDGHGNAVPPLVLVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P RIE YD SHI G + VG MV
Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F++     +  DD A M  VL RR  +LI++ +             
Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   +   ++L      LY +QRLRDEAHRFAIT HR +R KA   S LD ++G+G  
Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R++ L+  FG+V+ + +++ + +  + G   K+A ++     ++  
Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651


>gi|289426287|ref|ZP_06428033.1| excinuclease ABC, C subunit [Propionibacterium acnes SK187]
 gi|289153452|gb|EFD02167.1| excinuclease ABC, C subunit [Propionibacterium acnes SK187]
          Length = 672

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 191/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 13  TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 73  QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T+ +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+SE +
Sbjct: 133 PFGQAWAIRNTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSEAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   E   F++G    + +++   M +A+   ++E A + RD L ALS     N  +  
Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +L+S E     ++      + G  V+I VP++G+K  +++  
Sbjct: 313 ASDGQVRDDGHGNAVPPLVLVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P R+E YD SHI G + VG MV
Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRMESYDISHIQGTNVVGSMV 432

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F++     +  DD A M  VL RR  +LI++ +             
Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   +   ++L      LY +QRLRDEAHRFAIT HR +R KA   S LD ++G+G  
Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R++ L+  FG+V+ + +++ + +  + G   K+A ++     ++  
Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651


>gi|294339725|emb|CAZ88087.1| putative UvrABC system protein C (Protein uvrC) (Excinuclease ABC
           subunit C) [Thiomonas sp. 3As]
          Length = 647

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 200/631 (31%), Positives = 319/631 (50%), Gaps = 34/631 (5%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+     G +LYVGKA +L+KR+ SY   ++   RI  M+S+I+ +  TVT TE
Sbjct: 22  PHLPGVYRYFAADGSLLYVGKARDLRKRVSSYFQKDHGGTRIGLMVSRIHRLDTTVTRTE 81

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLE N+IK   PR+NIL RDDKS+PY+ IT  H+ P +  +R ++  +  YFGP+ 
Sbjct: 82  AEALLLENNLIKTQHPRYNILFRDDKSYPYLQITTAHEYPRVAYYRGATDRKQQYFGPYP 141

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           +  +V+++I  LQ+ F LR+C D+VF +R+RPCLL QI RC+ PC G+IS+  Y   V  
Sbjct: 142 NAWSVKESIAVLQKVFQLRTCEDTVFSNRSRPCLLHQIHRCTAPCVGKISAADYARDVQH 201

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
           A +FL G +  +   +   M   +    +E A + RD++AALS +             +D
Sbjct: 202 AVRFLRGDHGVVMGDLQLQMQSLSDALRFEEAAVLRDQIAALSGVLQQQSMEVGSAEDVD 261

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-----DSESTNAQIL------------ 286
             ++      AC+       G++ G   +F        +     A  +            
Sbjct: 262 ILAVALKGGRACVNLAMVRGGRHLGDRAYFPSQVQAALELGDDLADGVAPEQGAPGQAAQ 321

Query: 287 ---SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
                F+ Q Y     P  ++     E   L  +   +  G++++     +G++R  +E 
Sbjct: 322 RVLQAFVAQHYLQMAPPPVLVCDLPVEPELLDALG--EHAGHRMQQVTQPRGQRRDWLEM 379

Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIMGCSAVGCMV 400
           A   A  + T+ L+ E S +       +   L        R E +D SH  G +     V
Sbjct: 380 AQKGAQIALTRLLAEEGSQRERTFALAQALGLGAEQAEGLRAECFDISHTAGEATQASCV 439

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460
           V  E+    +QYR+F ++   +   DD A MR VL RR+ ++ + +    F    +  S 
Sbjct: 440 VYAEHAMQPSQYRRFRIND--ITPGDDYAAMRQVLTRRYKRVAEAQAQGAFAADGETPSD 497

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LV 519
              PD+V++DGG+GQ++ A+ V  +L ++  + I+ + KG  R  G+E+     G   L 
Sbjct: 498 ARLPDLVLVDGGRGQVTMAREVFTELGLDLSV-IVGVEKGEGRKVGLEELVFADGRPKLT 556

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGT 577
           L      L  + ++RDEAHRFAIT  R  R K     S L++I GIGP R+  LL  FG 
Sbjct: 557 LPADSAALMLVAQIRDEAHRFAITGMRAARAKVRTGGSRLEDIPGIGPKRRAKLLARFGG 616

Query: 578 VKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ +  +S + L +++GIS+++A  +Y   H
Sbjct: 617 IRGVEAASEDDLMTVDGISRELAHLLYKALH 647


>gi|171316977|ref|ZP_02906184.1| excinuclease ABC, C subunit [Burkholderia ambifaria MEX-5]
 gi|171097901|gb|EDT42721.1| excinuclease ABC, C subunit [Burkholderia ambifaria MEX-5]
          Length = 682

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 216/669 (32%), Positives = 331/669 (49%), Gaps = 70/669 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D AG VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDTAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R S   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS++ Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISADDYAIDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHGFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE---------------------- 279
            D  ++       C+       G++ G   +F                            
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVESALTLAEGGLGDEADGVDGGDEA 317

Query: 280 --------------------------STNAQILSYFLRQFYTDKPCPENILLSEEAEETS 313
                                     S  A++L  F+ Q Y     P  +++S       
Sbjct: 318 AAALPGEPADEAAAARDGAASGVAGASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRD 377

Query: 314 LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKF 373
           LLE+   +Q G+KV +    QG++R  +  A  NA  +  + LS + S Q   +   +  
Sbjct: 378 LLEL-LSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALAETL 436

Query: 374 ALPHI---PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430
           +         RIE +D SH MG +     VV   +     +YR++N+    +   DD A 
Sbjct: 437 SFECDDLAMLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYAA 494

Query: 431 MRMVLERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           MR VL RR+ ++++         +   ++    +Q  +    P++V++DGGKGQ+  A+ 
Sbjct: 495 MRQVLTRRYEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQ 554

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRF 540
           V  +L ++  + ++ +AKG  R  G+E      G   L L      L  + ++RDEAHRF
Sbjct: 555 VFTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMLVAQIRDEAHRF 613

Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT  R +R KA   S L+E+ GIG  R++ LL  FG ++ +  +S E LAS++GIS  +
Sbjct: 614 AITGMRAKRAKARQTSRLEELEGIGAKRRQRLLARFGGLRGVVAASVEELASVDGISHAL 673

Query: 600 ACKIYNHFH 608
           A +IY   H
Sbjct: 674 AEQIYKQLH 682


>gi|115351073|ref|YP_772912.1| excinuclease ABC subunit C [Burkholderia ambifaria AMMD]
 gi|122323647|sp|Q0BGZ5|UVRC_BURCM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|115281061|gb|ABI86578.1| Excinuclease ABC subunit C [Burkholderia ambifaria AMMD]
          Length = 684

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 216/671 (32%), Positives = 330/671 (49%), Gaps = 72/671 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D AG VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDTAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R S   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS++ Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISADDYAIDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS----------------------- 278
            D  ++       C+       G++ G   +F                            
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVESALTLAEGGLGDEADGADGADEA 317

Query: 279 ---------------------------ESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
                                       S  A++L  F+ Q Y     P  +++S     
Sbjct: 318 AAALPGEPADEAAAARDAASSASGASSASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPAS 377

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
             LLE+   +Q G+KV +    QG++R  +  A  NA  +  + LS + S Q   +   +
Sbjct: 378 RDLLEL-LSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALAE 436

Query: 372 KFALPHI---PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
             +         RIE +D SH MG +     VV   +     +YR++N+    +   DD 
Sbjct: 437 TLSFECDDLAMLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDY 494

Query: 429 AMMRMVLERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           A MR VL RR+ ++++             ++    ++  +    P++V++DGGKGQ+  A
Sbjct: 495 AAMRQVLTRRYEKMVEQAAQAAAADAAAGIDGESTREAEASSLLPNIVLIDGGKGQVEIA 554

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           + V  +L ++  + ++ +AKG  R  G+E      G   L L      L  + ++RDEAH
Sbjct: 555 RQVFTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMLVAQIRDEAH 613

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT  R +R KA   S L+E+ GIG  R++ LL  FG ++ +  +S E LAS+EGIS 
Sbjct: 614 RFAITGMRAKRAKARQTSRLEELEGIGAKRRQRLLARFGGLRGVVAASVEELASVEGISH 673

Query: 598 KIACKIYNHFH 608
            +A +IY   H
Sbjct: 674 ALAEQIYKQLH 684


>gi|302533805|ref|ZP_07286147.1| excinuclease ABC, C subunit [Streptomyces sp. C]
 gi|302442700|gb|EFL14516.1| excinuclease ABC, C subunit [Streptomyces sp. C]
          Length = 684

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 180/622 (28%), Positives = 311/622 (50%), Gaps = 32/622 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           Q+P+ PGVY+  D   RV+YVGKA +L++R+ +Y         R   M++   ++ +TV 
Sbjct: 30  QVPDSPGVYKFRDEHRRVIYVGKAKSLRQRLANYFQDIAGLHPRTATMVTTAASVEWTVV 89

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+P + +T   + P +   R        YFG
Sbjct: 90  STEVEALQLEYSWIKEFDPRFNVKYRDDKSYPSLAVTMNEEYPRVQVMRGPKKKGVRYFG 149

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T++ + R F +R+C+  VF+      RPCLL  I +CS PC G ++ E++
Sbjct: 150 PYGHAWAIRETVDLMLRVFPVRTCSAGVFKRSAQIGRPCLLGYIGKCSAPCVGRVTPEEH 209

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E   +   F++G       ++ + M++A  + +YE A   RD + AL      N  +  
Sbjct: 210 RELAEDFCDFMAGRTGTYLSRLEKQMHEAAEEMEYERAARLRDDIGALRRAMEKNAVVLA 269

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
                D  ++  ++  A +Q      G+ RG   +          A ++ + L+Q Y + 
Sbjct: 270 DATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLYGEE 329

Query: 297 --KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             +  P+ +L+    E+   L      + G  V + +P++G+K+ ++E    NA +S   
Sbjct: 330 KGEAVPKEVLVPALPEDAPALGQWLAGRRGSGVSLRIPQRGDKKALMETVHRNALQSLAL 389

Query: 355 KLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             +       +    L++  +   L   P RIE +D SH+ G   V  MVV  +    K+
Sbjct: 390 HKTKRAGDLTTRSRALEEIAEALELDGAPLRIECFDISHLQGDDVVASMVVFEDGLARKS 449

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN---------EENLNFHPKKQEYSFP 461
           +YR+F +     + QDD   M  V+ RRF + ++          E+        +   F 
Sbjct: 450 EYRRFQVKS--FEGQDDVRSMHEVVSRRFRRYLQEKLKTGEWDAEDGEVPEDDGRPKRFA 507

Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521
             P +V++DGG+ Q++AA+  L++L +++ + +  +AK  +     E +   + + +VL 
Sbjct: 508 YPPQLVVVDGGQPQVAAAKRALEELGIDD-VAVCGLAKRLE-----EVWLPGEDDPVVLP 561

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKM 580
                LY +QR+RDEAHRFAI   R +R K    SPLD++ G+G  RK  L++ FG+VK 
Sbjct: 562 RTSEGLYLLQRVRDEAHRFAIQYQRNKRGKRLRVSPLDDVPGLGESRKLALVKHFGSVKK 621

Query: 581 ISRSSPETLASIEGISKKIACK 602
           + +++ + +  + GI +K A  
Sbjct: 622 LRQATIDQICEVPGIGRKTAET 643


>gi|119370546|sp|Q6A9J8|UVRC_PROAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|313813155|gb|EFS50869.1| excinuclease ABC subunit C [Propionibacterium acnes HL025PA1]
 gi|315107006|gb|EFT78982.1| excinuclease ABC subunit C [Propionibacterium acnes HL030PA1]
          Length = 672

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 191/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 13  TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 73  QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T+ +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+SE +
Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSEAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   E   F++G    + +++   M +A+   ++E A + RD L ALS     N  +  
Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +L+S E     ++      + G  V+I VP++G+K  +++  
Sbjct: 313 ASDGQVRDDGHGNAVPPLVLVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P R+E YD SHI G + VG MV
Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRMESYDISHIQGTNVVGSMV 432

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F++     +  DD A M  VL RR  +LI++ +             
Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   +   ++L      LY +QRLRDEAHRFAIT HR +R KA   S LD ++G+G  
Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R++ L+  FG+V+ + +++ + +  + G   K+A ++     ++  
Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651


>gi|50842299|ref|YP_055526.1| excinuclease ABC subunit C [Propionibacterium acnes KPA171202]
 gi|50839901|gb|AAT82568.1| excinuclease ABC subunit C [Propionibacterium acnes KPA171202]
          Length = 686

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 191/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 27  TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 86

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 87  QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 146

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T+ +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+SE +
Sbjct: 147 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSEAH 206

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   E   F++G    + +++   M +A+   ++E A + RD L ALS     N  +  
Sbjct: 207 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 266

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 267 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 326

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +L+S E     ++      + G  V+I VP++G+K  +++  
Sbjct: 327 ASDGQVRDDGHGNAVPPLVLVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 386

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P R+E YD SHI G + VG MV
Sbjct: 387 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRMESYDISHIQGTNVVGSMV 446

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F++     +  DD A M  VL RR  +LI++ +             
Sbjct: 447 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 504

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 505 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 559

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   +   ++L      LY +QRLRDEAHRFAIT HR +R KA   S LD ++G+G  
Sbjct: 560 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 619

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R++ L+  FG+V+ + +++ + +  + G   K+A ++     ++  
Sbjct: 620 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 665


>gi|271500031|ref|YP_003333056.1| excinuclease ABC subunit C [Dickeya dadantii Ech586]
 gi|270343586|gb|ACZ76351.1| excinuclease ABC, C subunit [Dickeya dadantii Ech586]
          Length = 610

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 211/618 (34%), Positives = 337/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D +  V+YVGKA +L+KR+ SY  ++  + +   ++  I  I  T+
Sbjct: 11  LKTVTSQPGVYRMYDASDTVIYVGKAKDLKKRLSSYFRAHVASRKTEALVKSIRQIDVTI 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPMIFLS-GDTHPRLSVHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF + +AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGNAVRETLMLLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVNGLVSEEEYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
           + V   + FLSG +  +  ++   M  A+    +E A   RD++ A+  +          
Sbjct: 190 QQVDYVRLFLSGKDQQVLTRLIERMEAASHALKFEEAARIRDQIQAVRRVTEKQFVSGDG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  A+++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKILGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSV 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +ILL     E  LL  S  +Q G K++I    +G++ + ++ A  NAH + T K
Sbjct: 310 SRTLPSDILLDFSLPEHQLLAESLTEQAGRKIQIQTRPRGDRARYLKLARTNAHTALTTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + + Q  L        +     R+E +D SH MG   V   VV   +G ++++YR++
Sbjct: 370 LSQQSTIQQRLTALASVLGIE-KINRMECFDISHTMGEQTVASCVVFNADGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I   +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYDKSIDESK---------------IPDVIVIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531
           L+ A+ V   L+V     R  ++ +AKG  R AG+E  F +  GE + L    P L+ IQ
Sbjct: 472 LAQARDVFASLHVTWDTTRPVLLGVAKGSDRKAGLETLFFEATGEGVALPADSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AI+ HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAISGHRKQRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQPLMNASVEDIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
           ++ GIS  +A KI++   
Sbjct: 592 NVPGISHALAEKIFHALK 609


>gi|314987670|gb|EFT31761.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA2]
 gi|314990150|gb|EFT34241.1| excinuclease ABC subunit C [Propionibacterium acnes HL005PA3]
          Length = 672

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 190/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 13  TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 73  QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T+ +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+S+ +
Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   E   F++G    + +++   M +A+   ++E A + RD L ALS     N  +  
Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +++S E     ++      + G  V+I VP++G+K  +++  
Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P RIE YD SHI G + VG MV
Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLGRAPLRIESYDISHIQGTNVVGSMV 432

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F++     +  DD A M  VL RR  +LI++ +             
Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   +   ++L      LY +QRLRDEAHRFAIT HR +R KA   S LD ++G+G  
Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R++ L+  FG+V+ + +++ + +  + G   K+A ++     ++  
Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651


>gi|293192767|ref|ZP_06609662.1| excinuclease ABC subunit C [Actinomyces odontolyticus F0309]
 gi|292820014|gb|EFF79012.1| excinuclease ABC subunit C [Actinomyces odontolyticus F0309]
          Length = 695

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 203/663 (30%), Positives = 322/663 (48%), Gaps = 61/663 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y     N   R   M++  + +++TV 
Sbjct: 37  DIPTSPGVYRFSDPQGRVIYVGKAKNLRNRLTNYFQDLANLHPRTQQMVTTASAVQWTVV 96

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IK   PRFN++ +DDKS+PY+ ++   + P +   R+   +   YFG
Sbjct: 97  RSEVEALTLEFTWIKEFNPRFNVMFKDDKSYPYLAVSMGERFPRVQVTRERKRVGSRYFG 156

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P+  V A+ +TI+ L R F +RSC+  VF+      RPCLL  I +C+ PC G IS E++
Sbjct: 157 PYTQVWAIRETIDQLLRVFPMRSCSAGVFQRAKAQGRPCLLGYIDKCAAPCVGRISMEEH 216

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E      +F+ G    +   +   M QA+++ ++E A   RD + AL  +   N  + +
Sbjct: 217 RELAEGLCQFMEGRTGPVIRDLEEQMRQASMELNFEGAAKLRDDVKALRTVLERNAVVLD 276

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D FSL  +   A +       G+ RGT  + ++    + +A +++  L Q Y+  
Sbjct: 277 DGSDADVFSLVSDDLDAAVHVFHVRGGRIRGTRGWVIERVDGADDAALMARLLEQVYSSA 336

Query: 298 P---------------------------CPENILLSEEAEETSLLEISFFKQYGYKVKIT 330
                                        P  +L+S E EE   +     +  G  V + 
Sbjct: 337 SMDEAGAGKAAKVAAVSVDDVAHTPTSAIPREVLVSVEPEEKETIARWLAEIRGASVSVH 396

Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYD 386
           VPK+G K +I++    NA ++     +       +    L+   +   LP  P RIE YD
Sbjct: 397 VPKRGPKAQIMDTVTENARQALALHRTKRAGDITARSKALEQLAENLDLPGAPLRIECYD 456

Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKN 445
            SH  G + V  MVV  +    K+ YR +N+         DD + M  VL RRFS+L+  
Sbjct: 457 VSHTGGENQVASMVVFEDGMPRKDAYRTYNIRGEGGNGTPDDTSAMNEVLTRRFSRLLAE 516

Query: 446 EENLNFHPK--------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           E  ++   +               +   F   PD+V++DGG  Q++AA+  L  +  +  
Sbjct: 517 EAGVDGEDEDGVAYASGPIDAMTGRPKRFSYRPDLVVVDGGLPQVNAARAALDAVGAD-- 574

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
           + ++ +AK  +     E +   +   L+L      LY +Q LRDE+HRFAIT HRKRR K
Sbjct: 575 VPVVGLAKRLE-----EVWIPGEDFPLILPRTSEALYLLQYLRDESHRFAITKHRKRRSK 629

Query: 552 A-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           A   S LD I G+GP R+  LL+ FG+VK I  ++PE +A ++G+   +A  I +    +
Sbjct: 630 AQRRSVLDSIPGLGPARQAALLKHFGSVKRIREATPEQIAEVKGVGLGLARTIRDRLATS 689

Query: 611 TSH 613
           +  
Sbjct: 690 SRE 692


>gi|251789133|ref|YP_003003854.1| excinuclease ABC subunit C [Dickeya zeae Ech1591]
 gi|247537754|gb|ACT06375.1| excinuclease ABC, C subunit [Dickeya zeae Ech1591]
          Length = 610

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 212/618 (34%), Positives = 335/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D +  V+YVGKA +L+KR+ SY  ++  + +   ++  I  I  T+
Sbjct: 11  LKTVTSQPGVYRMYDASDTVIYVGKAKDLKKRLSSYFRAHVASRKTEALVKSIRQIDVTI 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLS-GDTHPRLSVHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF + +AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E Y 
Sbjct: 130 GPFPNGNAVRETLMLLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
           + V   + FLSG +  +  ++   M  A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDQQVLTRLVERMEAASHALKFEDAARIRDQIQAVRRVTEKQFVSGDG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   GQ  G+ ++F K    +  A+++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGQVLGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSA 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +ILL     E  LL  S  +Q G K++I    +G++ + ++ A  NAH +   K
Sbjct: 310 SRTLPSDILLDFSLPEYQLLAESLSEQAGRKIQIQTRPRGDRARYLKLARTNAHTALATK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + + Q  L        +     R+E +D SH MG   V   VV   +G ++++YR++
Sbjct: 370 LSQQSTVQQRLTALASVLEIE-KINRMECFDISHTMGEQTVASCVVFNADGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I   +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKSIDESK---------------IPDVIVIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531
           L+ A+ V   L V   +NR  ++ +AKG  R AG+E  F +  GE + L    P L+ IQ
Sbjct: 472 LAQAKEVFASLQVSWDKNRPLLLGVAKGSDRKAGLETLFFEATGEGVALPADSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AI+ HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAISGHRKQRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQPLMNASIEDIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
            + GIS  +A KI++   
Sbjct: 592 QVPGISHSLAEKIFHALK 609


>gi|154508836|ref|ZP_02044478.1| hypothetical protein ACTODO_01346 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798470|gb|EDN80890.1| hypothetical protein ACTODO_01346 [Actinomyces odontolyticus ATCC
           17982]
          Length = 671

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 203/663 (30%), Positives = 322/663 (48%), Gaps = 61/663 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y     N   R   M++  + +++TV 
Sbjct: 13  DIPTSPGVYRFSDPQGRVIYVGKAKNLRNRLTNYFQDLANLHPRTQQMVTTASAVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IK   PRFN++ +DDKS+PY+ ++   + P +   R+   +   YFG
Sbjct: 73  RSEVEALTLEFTWIKEFNPRFNVMFKDDKSYPYLAVSMGERFPRVQVTRERKRVGSRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P+  V A+ +TI+ L R F +RSC+  VF+      RPCLL  I +C+ PC G IS E++
Sbjct: 133 PYTQVWAIRETIDQLLRVFPMRSCSAGVFQRAKAQGRPCLLGYIDKCAAPCVGRISMEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E      +F+ G    +   +   M QA+++ ++E A   RD + AL  +   N  + +
Sbjct: 193 RELAEGLCQFMEGRTGPVIRDLEEQMRQASMELNFERAAKLRDDVKALRTVLERNAVVLD 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D FSL  +   A +       G+ RGT  + ++    + +A +++  L Q Y+  
Sbjct: 253 DGSDADVFSLVSDDLDAAVHVFHVRGGRIRGTRGWVIERVDGADDAALMARLLEQVYSSA 312

Query: 298 P---------------------------CPENILLSEEAEETSLLEISFFKQYGYKVKIT 330
                                        P  +L+S E EE   +     +  G  V + 
Sbjct: 313 STDEAGAGKAAKVAAVSVDDVAHTPTSAIPREVLVSVEPEEKETIARWLAEIRGASVSVH 372

Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYD 386
           VPK+G K +I++    NA ++     +       +    L+   +   LP  P RIE YD
Sbjct: 373 VPKRGPKAQIMDTVTENARQALALHRTKRAGDITARSKALEQLAENLDLPGAPLRIECYD 432

Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKN 445
            SH  G + V  MVV  +    K+ YR +N+         DD + M  VL RRFS+L+  
Sbjct: 433 VSHTGGENQVASMVVFEDGIPRKDAYRTYNIRGEGGNGTPDDTSAMNEVLTRRFSRLLAE 492

Query: 446 EENLNFHPK--------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           E  ++   +               +   F   PD+V++DGG  Q++AA+  L  +  +  
Sbjct: 493 EAGVDGEDEDGVAYASGPIDAMTGRPKRFSYRPDLVVVDGGLPQVNAARAALDAVGAD-- 550

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
           + ++ +AK  +     E +   +   L+L      LY +Q LRDE+HRFAIT HRKRR K
Sbjct: 551 MPVVGLAKRLE-----EVWIPGEDFPLILPRTSEALYLLQYLRDESHRFAITKHRKRRSK 605

Query: 552 A-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           A   S LD I G+GP R+  LL+ FG+VK I  ++PE +A ++G+   +A  I +    +
Sbjct: 606 AQRRSVLDSIPGLGPARQAALLKHFGSVKRIREATPEQIAEVKGVGLGLARTIRDRLTTS 665

Query: 611 TSH 613
           +  
Sbjct: 666 SRE 668


>gi|242238893|ref|YP_002987074.1| excinuclease ABC subunit C [Dickeya dadantii Ech703]
 gi|242130950|gb|ACS85252.1| excinuclease ABC, C subunit [Dickeya dadantii Ech703]
          Length = 610

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 208/617 (33%), Positives = 340/617 (55%), Gaps = 31/617 (5%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +   PGVY+M D +  V+YVGKA +L+KR+ SY  ++  + +   ++  I  I  T+T
Sbjct: 12  KTVTSQPGVYRMYDASNTVIYVGKAKDLKKRLSSYFRTHVASRKTEALVKSIRQIDVTIT 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLE N IKR +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFG
Sbjct: 72  HTETEALLLEHNYIKRYQPRYNVLLRDDKSYPMIFLS-GDIHPRLSIHRGAKHAKGEYFG 130

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYME 182
           PF +  AV +T+  LQ+ F +R C ++V+R+R+RPCL +QI RC GPC    +S ++Y +
Sbjct: 131 PFPNGSAVRETLLLLQKLFPIRQCENNVYRNRSRPCLQYQIGRCLGPCVAGYVSDDEYQQ 190

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYN 240
            V   + FLSG +  + E++   M  A+ +  +E A   RD++ A+  +          +
Sbjct: 191 QVDYVRLFLSGKDQQVLERLVDRMENASRELKFEEAARIRDQIQAVRRVTEKQFVSGHGD 250

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296
            +D   +  +  +AC+   F   GQ  G+ ++F K    +   +++  F+ QFY      
Sbjct: 251 DLDVIGVAFDAGMACLHVLFIRQGQVLGSRSYFPKVPGGTALGEVVQTFVGQFYLQGSGA 310

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P ++LL     +  LL  S     G K+ I    +G++ + ++ A  NAH +   KL
Sbjct: 311 RTLPSDVLLDFSLPDLQLLAESLSTIAGRKISIQCKPRGDRARYLKLARTNAHTALVTKL 370

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + Q  L + ++   L    KR+E +D SH MG   V   VV   NG ++++YR++N
Sbjct: 371 SQQSTVQQRLAELSRILGL-GDIKRMECFDISHTMGEQTVASCVVFDSNGPLRSEYRRYN 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M  VL+RR+ + + + +                PDVV++DGGKGQL
Sbjct: 430 ITD--ITPGDDYAAMTQVLKRRYGKSLDDSK---------------IPDVVVIDGGKGQL 472

Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQR 532
           + A+ V + L V   + +  ++ +AKG  R AG+E  F+   GE + L    P L+ IQ 
Sbjct: 473 AQAKAVFESLQVPWDKTKPLLLGVAKGSDRKAGLETLFLDTTGEGMALPPDSPALHVIQH 532

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RD++H  AI+ HRK+R K    S L+ I GIGP R+++LL+  G ++ +  +S + +A+
Sbjct: 533 IRDDSHDHAISGHRKKRAKVKSTSALETIEGIGPKRRQMLLKYMGGLQPLMSASIDEIAN 592

Query: 592 IEGISKKIACKIYNHFH 608
           + GIS  +A KI++   
Sbjct: 593 VPGISHALAEKIFHALK 609


>gi|227112459|ref|ZP_03826115.1| excinuclease ABC subunit C [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 610

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 210/618 (33%), Positives = 330/618 (53%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY  S+  + +   ++  I +I  T+
Sbjct: 11  LKTVTSQPGVYRMYDAGNTVIYVGKAKDLKKRLASYFRSHVASRKTEALVKSIKHIDVTI 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPMIFLS-GDAHPRLAVHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF + +AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E Y 
Sbjct: 130 GPFPNGNAVRETLILLQKLFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + V   + FLSG +  +  ++   M  A+    +E A   RD++ A+  +        + 
Sbjct: 190 QQVDYVRLFLSGKDQQVLNQLISRMEAASRDLHFEDAARIRDQIQAVRRVTEKQFVSGDG 249

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
             +D  S+  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 EDLDVISVAFDAGMACVYVLFIRQGKVLGSRSYFPKVPGGTELGEVVQTFVGQFYLQGSL 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     +  LL  S     G KV+I    +G++ + ++ A  NA  +   K
Sbjct: 310 GRTLPTEILLDFTLPDKDLLTESLTAVAGRKVQIQTKPRGDRARYLKLARTNAATALVTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP    R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTIHQRLAALANVLQLP-EIHRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL RR+ + + + +                PDV+++DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMAQVLRRRYGKALDDSK---------------IPDVIVIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531
           L  AQ V   L V   +N+  ++ +AKG  R AG+E  F +  GE + L    P L+ IQ
Sbjct: 472 LGQAQDVFDSLQVSWDKNKPLLLGVAKGSDRKAGLETLFFESTGEGMALPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AI  HRK+R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHDHAIGGHRKKRAKVRNTSTLELIEGVGPKRRQTLLKYMGGLQPLMNASIEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
           ++ GIS  +A KI++   
Sbjct: 592 NVPGISHALAEKIFHALK 609


>gi|145639654|ref|ZP_01795257.1| excinuclease ABC subunit C [Haemophilus influenzae PittII]
 gi|145271211|gb|EDK11125.1| excinuclease ABC subunit C [Haemophilus influenzae PittII]
 gi|309750624|gb|ADO80608.1| Excinuclease ABC subunit C [Haemophilus influenzae R2866]
          Length = 609

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 211/616 (34%), Positives = 338/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I  T+T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFTGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE    +Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCDLLNLPKIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M  VL++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQVLQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A  I+     +
Sbjct: 594 ISLKLAETIFETLKND 609


>gi|145633382|ref|ZP_01789112.1| excinuclease ABC subunit C [Haemophilus influenzae 3655]
 gi|144985945|gb|EDJ92547.1| excinuclease ABC subunit C [Haemophilus influenzae 3655]
          Length = 609

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 210/616 (34%), Positives = 339/616 (55%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I  T+T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE    +Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG+E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGLEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGTKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A +I+     +
Sbjct: 594 ISPKLAERIFETLKND 609


>gi|167036996|ref|YP_001664574.1| excinuclease ABC subunit C [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320115414|ref|YP_004185573.1| excinuclease ABC subunit C [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|229557871|sp|B0K791|UVRC_THEP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|166855830|gb|ABY94238.1| excinuclease ABC, C subunit [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928505|gb|ADV79190.1| excinuclease ABC, C subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 615

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 199/618 (32%), Positives = 334/618 (54%), Gaps = 18/618 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
             + +PE PGVY M D +G+++YVGKA  L+ R++ Y  +      ++  M+S + +  +
Sbjct: 6   KLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKEKQLPKVKVMLSHVEDFEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI +T   + P +   R        
Sbjct: 66  IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP++S  AV +TI  +++ F +R+C  ++ +   + R CL + I  CS PCT +I+ E
Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNKNIEKDMGKVRECLYYHIGLCSAPCTNKINKE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y++ V +A  FL G    L +K+  +M +A  +  +E A   RD++ A+         +
Sbjct: 186 DYIKLVDQAVLFLDGKRDWLIQKLKEDMKKAAEELRFEEAARIRDQIFAIERTSEKQKVV 245

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  S+  + +++CIQ  F   G+  G   +++K        +I+S F++QFY 
Sbjct: 246 SVGEDEQDIISMARSADISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352
             P  P+ I+   E +E+ LL     ++ G KV IT+P +G+K+++++    NA  +  +
Sbjct: 306 GAPYIPKEIITDVELDESELLSEWLSQKRGNKVFITIPVRGKKKELVDMVYQNALEALKN 365

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              +  EIS   ++ + +    L +   RIE YD S+  G   VG MVV  +    K+QY
Sbjct: 366 DISIREEISKAQVVLELSNLVGLDYAK-RIEAYDISNTRGQDNVGSMVVFVDGKPKKSQY 424

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471
           RKFN+    V+ QDD   MR V+ERRF   I+ +E +     ++ +  F   PD++ +DG
Sbjct: 425 RKFNIK--YVEGQDDYESMREVIERRFLHAIEEKELIEKGELEEDKAKFAEMPDLIFVDG 482

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G G ++A   VL  L +   I +  + K  K         V     + + M       I 
Sbjct: 483 GIGHVNAVLQVLSGLGIS--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTSKAFRLIA 537

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++++EAHRFAIT H++++ K   S L  I GIG  R + L  +F +++ I R+S E L  
Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGEKRAKALYDAFKSIEEIKRASVEDLKK 597

Query: 592 IEGISKKIACKIYNHFHK 609
           +EG+++K A  +Y +F K
Sbjct: 598 VEGMNEKAAQAVYEYFRK 615


>gi|126174774|ref|YP_001050923.1| excinuclease ABC subunit C [Shewanella baltica OS155]
 gi|189038088|sp|A3D5P1|UVRC_SHEB5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|125997979|gb|ABN62054.1| Excinuclease ABC subunit C [Shewanella baltica OS155]
          Length = 609

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/611 (31%), Positives = 324/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+   V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 16  SSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHINVTLTHSET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYIL++ +H+ P L  HR     +G YFGP+ +
Sbjct: 76  DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ R+RPCL +Q+ RCS PC G++S+  Y E V  A
Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +   +   M  A  ++ YE A   RD++ AL  +    +   N   MD  
Sbjct: 195 SLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            ++++  +AC    F   G+  G+ +++    +++   ++L  F+ QFY +    +  P+
Sbjct: 255 GVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +  +    K  I    + ++   +  A+ NA  +   +LS + +
Sbjct: 315 EVVISHNFEELHELEAAVSEALDKKFSIKTNVRADRASFLRLAVTNATNAVVTRLSHKNT 374

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L    +R+E +D SH MG S V   VV    G  K +YR++N+    
Sbjct: 375 VEQRFVLLEEILELSTPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 432

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++    +                PD++ +DGG GQL  AQ 
Sbjct: 433 ITPGDDYAAMKQAVSRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  ++++    +I +AKG  R  G+E   +   E +  L    P L+ IQ +RDE+H
Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   L  + GIS 
Sbjct: 538 RFAIAGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 598 EMAQTIHDALR 608


>gi|258622634|ref|ZP_05717655.1| excinuclease ABC subunit C [Vibrio mimicus VM573]
 gi|258585090|gb|EEW09818.1| excinuclease ABC subunit C [Vibrio mimicus VM573]
          Length = 610

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 207/619 (33%), Positives = 325/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TV
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLIYQIGRCAGPCVKGLISDDGYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E V+  + FL G ++ +   +   M  A+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 EIVNYLRLFLQGKDNQVLSILVEKMELASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296
               D         +ACI       G+  G+ + F K  +E++  ++   FL Q+Y    
Sbjct: 250 LEDQDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPAETSQIEVFESFLSQYYLSHS 309

Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +  P  I+L++   EET  L+++  +  G KV   V   G + + +  A  NA  + T
Sbjct: 310 EARSIPTRIILNQGLTEETEALQMAISELAGRKVTFHVNPTGTRGRYLRLANTNALTAIT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K   ++  +  I  R+E +D SH MG S +   VV  + G VK +YR
Sbjct: 370 TKINHKMTIGQRFKALQEELGMDAIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M  VLERR+S+ +                    PD++ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++     +      II IAKG  R  G+E      G+   L    P L+ IQ
Sbjct: 472 GQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHSHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 592 KVPGISHALAENIYQALKQ 610


>gi|152997247|ref|YP_001342082.1| excinuclease ABC subunit C [Marinomonas sp. MWYL1]
 gi|150838171|gb|ABR72147.1| excinuclease ABC, C subunit [Marinomonas sp. MWYL1]
          Length = 607

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 218/612 (35%), Positives = 338/612 (55%), Gaps = 24/612 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D+ G +LYVGKA NL+ R+ SY      T +   ++S+I+ I   VT 
Sbjct: 14  NLTTRPGVYRMYDVKGELLYVGKAKNLKNRVASYFRVTGLTTKTMALVSRIHTIEIAVTK 73

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK+ +P +NILLRDDKS+PYIL+++ H  PAL   R     +G+ FGP
Sbjct: 74  SETEALLLEQTLIKQHRPPYNILLRDDKSYPYILLSN-HPHPALLFRRGDKADKGTLFGP 132

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV++++N++Q+ F +R C DS + +R+RPCL +QIKRCSGPC   IS E+Y   V
Sbjct: 133 FPSGSAVKESLNTMQKVFKVRQCEDSTYSNRSRPCLQYQIKRCSGPCVNLISDEEYELDV 192

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242
             A+ FL G +  L  +I   M+ A    ++E A   RD++  L HIQ            
Sbjct: 193 RHARMFLQGKDQELTAEITTQMSAAAADMEFERAAELRDQIIQLKHIQEQQHVYGQTGEA 252

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D  +        C+       G+  G+ +++ K   E T  ++LS F+ QFY    +  P
Sbjct: 253 DVIASIIQPGGLCVHVMMVRKGKVVGSKSYYPKMPIEITEGELLSSFIAQFYLGGIQELP 312

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +++S E E+   L    F+    K+++    +G++ + +E A +NA +    +LS + 
Sbjct: 313 KTLIISHELEDGDALVEGIFETTQKKIEVLSNVRGQRARWLELAKLNAEQGLQARLSDKR 372

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +H   +    K       P  +E +D SH  G + V   VV G +G  K +YR FN+   
Sbjct: 373 NHFSRITALQKLLGFSEPPMHMECFDISHSSGEATVASCVVFGPDGPDKKRYRSFNIEG- 431

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            V+  DD   M+  L RR+ ++   E                 PDV+++DGGKGQL+ A+
Sbjct: 432 -VEPGDDYGAMKQALTRRYKRVKSGE--------------LEAPDVLLIDGGKGQLTQAE 476

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHR 539
            VLK+L +   I ++ +AKG  R  G+E  ++   E  +VL      L+ IQ +RDEAHR
Sbjct: 477 TVLKELGL-VNIFLLGVAKGDTRKPGLETLYIGSKEDEVVLPPDSAALHLIQHIRDEAHR 535

Query: 540 FAI-TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA+ +  R+R KK  +S L++I GIGP R++ LL +FG  + +  +S E ++ ++GIS K
Sbjct: 536 FAVKSHRRRRDKKRRHSVLEDIPGIGPNRRKELLTAFGGYQELLSASQEDISKVKGISAK 595

Query: 599 IACKIYNHFHKN 610
            A +IY + HK+
Sbjct: 596 KAEEIYLYLHKS 607


>gi|322513961|ref|ZP_08067036.1| excinuclease ABC subunit C [Actinobacillus ureae ATCC 25976]
 gi|322120187|gb|EFX92145.1| excinuclease ABC subunit C [Actinobacillus ureae ATCC 25976]
          Length = 610

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 201/620 (32%), Positives = 327/620 (52%), Gaps = 33/620 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    ++YVGKA +L+KR+ SY  S   + +   +++ I++I  T+T 
Sbjct: 10  DVPHLPGVYRMYDAKNTIIYVGKAKDLKKRLSSYFRSQLASKKTEALVANIHHIETTITH 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +P++N+LLRDDKS+PYIL+T KH+ P +   R S  I G YFGP
Sbjct: 70  SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRITSFRGSKKIAGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y   
Sbjct: 129 YPNAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGYYSQAEYDNQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V+  + FL G +  + E + + M  A    D+E A   RD++ ++  +Q          +
Sbjct: 189 VNLVRLFLQGKDGQVVEHLVQKMESAAEDLDFEGAARFRDQIQSVRAVQEKQFVSNERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+   F   G+  G  ++F K  + +   ++   F+ QFY      
Sbjct: 249 DLDIISIAYQHGIACVHILFVRHGKVLGNRSYFPKVPNNTDLTELADTFVGQFYLQMNQH 308

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I++ +   E T+L  +   +            +G+K + +  A  NA  + T +
Sbjct: 309 RTIPNQIIIDQPLSEATTLANVLSEQARHKVSIADKNIRGDKSRYLALAKTNAEAALTLQ 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  +   +           L  I  R+E +D SH MG   V   VV  E+G +K+ YR+F
Sbjct: 369 LKQDTHIRQRYDSLKALLNLAEIK-RMECFDISHTMGNQTVASCVVFDEHGPLKSDYRRF 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   L +R+ + ++ E+                PD++ +DGGKGQ
Sbjct: 428 NIEG--ITGGDDYAAMEQTLLKRYDRNLEEEK---------------IPDIIFIDGGKGQ 470

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A      LNV   + +  +I +AKG +R AG+E   + K  + + L    P L+ IQ
Sbjct: 471 LNRALETFASLNVSWDKRKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + 
Sbjct: 531 HIRDESHNHAITGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 590

Query: 591 SIEGISKKIACKIYNHFHKN 610
           S+  ISK++A  I++    +
Sbjct: 591 SVPSISKQLAEVIFDTLQNS 610


>gi|312142879|ref|YP_003994325.1| excinuclease ABC, C subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903530|gb|ADQ13971.1| excinuclease ABC, C subunit [Halanaerobium sp. 'sapolanicus']
          Length = 616

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 212/621 (34%), Positives = 335/621 (53%), Gaps = 34/621 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P  PGVY M D  G ++YVGKA +L+ R++SY   NN +++   ++  I +  + 
Sbjct: 14  QIKELPAQPGVYMMKDETGMIIYVGKAKSLRSRVRSYFRKNNQSYKTQLLVRYIYDFDYI 73

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T TEVEA +LEAN+IK+ +P+FNI L+DDK++P+I +T     P ++K R        Y
Sbjct: 74  ITDTEVEAYILEANLIKKHQPKFNIRLKDDKTYPFIKVTKNLDFPRVFKTRLVKNDGAEY 133

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVF--RHRTRPCLLFQIKRCSGPCTGEISSEK 179
           FGPFA VDA+ KT++ ++  F LRSC   +       +PCL + I +C GPC G +S E 
Sbjct: 134 FGPFADVDAIYKTLDVIKDIFQLRSCKKEIIAGEPEAKPCLNYHINKCLGPCIGAVSKED 193

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +   FLSG    LK ++ + M  A  + +YE A   RD L A + +      + 
Sbjct: 194 YHELIDQVMLFLSGRQEELKAEVEKMMENAAQERNYEKAARFRDALKAFAKLSESQKVMS 253

Query: 240 NRM-DCFSLYHNKNL---ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           ++  D   +   +     AC Q      G+  G   F L+   E   A+++  FL+Q+Y 
Sbjct: 254 DKNIDQDVVALVEGENDLACSQLLLVRNGRLIGQEYFILEGTEEENKAEMMGSFLQQYYE 313

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
                P+ +LL+ +     L+E       G KVKI  P++G+K+K++E A  NA ++   
Sbjct: 314 QAAGIPDELLLNTDLAYRKLIEERLAVLKGKKVKILQPQKGDKKKMLEMAERNAAQNLKK 373

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    +      +K   +   +   P  IE +D S+I G   V  MVV       K 
Sbjct: 374 EDIRSKYEKQRTSGAVKKLAEILEIEKEPHHIEGFDISNIQGTDTVASMVVFKNGRPSKK 433

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR+F    N V+  DD + M+ V+ERR+++L++ ++ L              PD++++D
Sbjct: 434 DYRRF--KINTVEGPDDFSSMKEVVERRYARLLREDKKL--------------PDLILID 477

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLSAA  VL+ L +++ + II +AK  +     E F   + EA+++    P L  +
Sbjct: 478 GGKGQLSAAYEVLELLGIDD-LAIIGLAKKEE-----EIFKPGQSEAIIIPHHSPALQLL 531

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDEAHRFA++ HRK R +   +S LDEI G+G  R+  LLQ FG++  I  +    L
Sbjct: 532 QRVRDEAHRFAVSYHRKLRSRRLTHSMLDEIPGVGETRRNALLQHFGSLAKIREAKIWQL 591

Query: 590 ASIEGISKKIACKIYNHFHKN 610
             +EGIS K A KI+++  +N
Sbjct: 592 KEVEGISSKTARKIFDYLREN 612


>gi|256750641|ref|ZP_05491527.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750481|gb|EEU63499.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus CCSD1]
          Length = 615

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 199/618 (32%), Positives = 331/618 (53%), Gaps = 18/618 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
             + +PE PGVY M D +G+++YVGKA  L+ R++ Y  +      ++  M+S + +  +
Sbjct: 6   KLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKEKQLPKVKVMLSHVEDFEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI +T   + P +   R        
Sbjct: 66  IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP++S  AV +TI  +++ F +R+C  ++ +   + R CL + I  CS PCT +I+ E
Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNRNIEKDMGKVRECLYYHIGLCSAPCTNKINKE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V +A  FL G    L +K+  +M +A  +  +E A   RD++ A+         +
Sbjct: 186 DYRKLVDQAVLFLDGKRDWLIQKLKEDMKKAAEELRFEEAARIRDQIFAIERTSEKQKVV 245

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  S+  + +++CIQ  F   G+  G   +++K        +I+S F++QFY 
Sbjct: 246 SVGEDEQDIISMARSADISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352
             P  P+ I+   E +E  LL     ++ G KV IT+P +G+K+++++    NA  +  +
Sbjct: 306 GAPYIPKEIITDVELDERELLSEWLSQKRGNKVFITIPVRGKKKELVDMVYQNALEALKN 365

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              +  EIS    + + +    L +   RIE YD S+  G   VG MVV  +    K+QY
Sbjct: 366 DISIREEISKDQAVLELSNLVGLDYAK-RIEAYDISNTRGQDNVGSMVVFVDGKPKKSQY 424

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471
           RKFN+    V+ QDD   MR V+ERRF   I+ +E +     ++ +  F   PD++ +DG
Sbjct: 425 RKFNIK--YVEGQDDYESMREVIERRFLHAIEEKELIEKGELEEDKAKFAEMPDLIFVDG 482

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G G ++A   VL  L +   I +  + K  K         V     + + M       I 
Sbjct: 483 GIGHVNAVLQVLSGLGIS--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTSKAFRLIA 537

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++++EAHRFAIT H++++ K   S L  I GIG  R + L  +F +++ I R+S E L  
Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGEKRAKALYDAFKSIEEIKRASVEDLKK 597

Query: 592 IEGISKKIACKIYNHFHK 609
           +EG+++K A  +Y +F K
Sbjct: 598 VEGMNEKAAQAVYEYFRK 615


>gi|225028028|ref|ZP_03717220.1| hypothetical protein EUBHAL_02297 [Eubacterium hallii DSM 3353]
 gi|224954628|gb|EEG35837.1| hypothetical protein EUBHAL_02297 [Eubacterium hallii DSM 3353]
          Length = 629

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/624 (31%), Positives = 316/624 (50%), Gaps = 21/624 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M +    ++YVGKA  L+ R++ Y  S+ N + +I HM+S I    +
Sbjct: 7   ELKKLPAKPGVYLMHNAQDEIIYVGKARILKNRVRQYFQSSYNKSVKIQHMVSHIAYFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P +N +L+DDKS+PYI +T +   P +   R     +  
Sbjct: 67  IITDSELEALVLECNLIKEHRPHYNTMLKDDKSYPYIRVTVQEDYPRILFCRQVKRDKSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  +++ + +RSC+ S+ +   + RPCL +QI +C  PC   IS E
Sbjct: 127 YFGPYTSAGAVKDTIELMRKVYKIRSCSRSLPKEIGKDRPCLYYQINQCDAPCQNYISKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   V +A KFL+G    +   +   M +A  + ++E A  +RD +  +  I       
Sbjct: 187 EYRAHVDKALKFLNGDEKEIINSLEEKMKKAAAELEFEQAAEYRDLIENVKRIGEKQKIN 246

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  ++    + A +   F   G+  G   F +    +S   +I++ F++QFY 
Sbjct: 247 DTGGDDRDIIAMAKAGDEAVVAIFFIRSGKLLGRDHFHMTGIGDSEKQEIITDFIKQFYV 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  P+ IL  EE  +  +LE     + G KV   +PK+G K +++E A  NA     +
Sbjct: 307 GTPFIPKEILTQEEVLDQEILEKWLSDKRGSKVIFAMPKRGSKHQMMELARKNAQNVLAQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      + +  +   +     R+E +D S+  G   V  MVV  +    ++
Sbjct: 367 DSEKLKREERRTIGAVHELEQALGI-GNLNRMEAFDISNTNGYENVASMVVFEKGKAKRS 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQ-LIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            YRKF +    V   DD   M   LERRFS  + + +E        +  SF  +PD++++
Sbjct: 426 DYRKFKIKT--VAGPDDYHCMEEALERRFSHGIREQKEREEKGQDMELGSFTRFPDILMM 483

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ A  VL+KL +   I +  + K                E +           
Sbjct: 484 DGGKGQVNIALQVLEKLGLT--IPVCGMVKDDFHRTRA---LYYNNEIIEFPKNSEAFRM 538

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I RL+DEAHRFAIT H+  R K   +S LD+I GIGP R++ L++ F  +  +  +S   
Sbjct: 539 ITRLQDEAHRFAITYHKALRGKEQVHSVLDDIKGIGPARRKSLMKHFKDIGKVKEASVTE 598

Query: 589 LASIEGISKKIACKIYNHFHKNTS 612
           L   +GI++ +A +IY  FH++TS
Sbjct: 599 LCEADGITENVAEEIYRFFHEDTS 622


>gi|331090512|ref|ZP_08339365.1| UvrABC system protein C [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405855|gb|EGG85383.1| UvrABC system protein C [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 613

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 201/620 (32%), Positives = 341/620 (55%), Gaps = 25/620 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N   +I  M++ I+   +
Sbjct: 7   ELKKLPGRPGVYLMHDEKDDIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHISRFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDK++P+I +T +   P +   R+    +  
Sbjct: 67  IVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTVEEDYPRVLFAREIKKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI+ +++ + +RSC  ++ +   + RPCL + IK+C  PC G IS E
Sbjct: 127 YFGPYTSAGAVKDTIDLIRKLYHIRSCNRNLPKDIGKERPCLNYHIKQCYAPCQGYISKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + V +A +FL G    + + +   M +A+ + D+E AI +R+ L ++  I       
Sbjct: 187 EYRKSVQQALRFLGGEYDKILKTLEEKMEKASEELDFEKAIEYRELLNSVKQIAQKQKIT 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            +     D  ++   +N A +Q  F   G+  G   F++K +      +IL  F++QFY 
Sbjct: 247 NSDGEDKDILAVATEENDAVVQVFFIRGGRLIGRDHFYMKINEGEQKNEILENFIKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  +++ EE +E+ LLE    ++ G+KV ITV ++G+K+K+++ A  NA      
Sbjct: 307 GTPYIPRELMVQEELKESRLLEEWLTQKRGHKVYITVHQKGQKKKLVDLAEKNAKLVLST 366

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+  K   L ++  R+E +D S+  G ++VG M+V  +    +N
Sbjct: 367 DKERLKREEGRTIGAVKEIEKLLGLSNLV-RMEAFDISNTNGFNSVGSMIVYEKGKPKRN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V+  DD A M  VL RRF   IK +E       K+  SF S+PD++++D
Sbjct: 426 DYRKFKIKG--VQGADDYASMEEVLTRRFEHGIKEKEE-----GKELGSFTSFPDLIMMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL++L++   I +  + K                  + ++        I
Sbjct: 479 GGKGQVNVALQVLERLHL--NIAVCGMVKDDNHRTRG---LYYNNVEIPIDRNSEAFRLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HRK R +   +S LD+I GIGP R++ L++ F ++  I  ++ E L
Sbjct: 534 TRIQDEAHRFAIEFHRKLRGQGQVHSILDDIKGIGPARRKDLMKHFMSLDAIKEATVEEL 593

Query: 590 ASIEGISKKIACKIYNHFHK 609
            ++  +++K A ++YN FHK
Sbjct: 594 KNLPSMNEKSAQEVYNFFHK 613


>gi|298675948|ref|YP_003727698.1| excinuclease ABC subunit C [Methanohalobium evestigatum Z-7303]
 gi|298288936|gb|ADI74902.1| excinuclease ABC, C subunit [Methanohalobium evestigatum Z-7303]
          Length = 603

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 214/620 (34%), Positives = 347/620 (55%), Gaps = 33/620 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60
              + P+ PGVY M D +  V+Y+GKA +L+KR+  Y  S   H+ +   ++  I +I +
Sbjct: 6   DISKFPDLPGVYLMKDNSDTVIYIGKARSLKKRVSQYFQSQKYHSPKTRTLVKHIADIEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +EVEAL+ EA++IK+ KPR+N+ L+DDK +PYI IT+  K P +Y  R        
Sbjct: 66  IVTQSEVEALITEASLIKKHKPRYNVRLKDDKRYPYIKITNS-KYPRIYLTRRRLMDNAL 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  A  KT++ + R F +R C   +   +T  RPCL + IKRC GPCTG +S  
Sbjct: 125 YFGPYTNAGAARKTLDIISRIFKVRKCKTKIDDDKTHSRPCLNYHIKRCLGPCTGAVSET 184

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--D 236
            Y E ++ A +FL G +  L +++   M Q +L ++YE+A + RD++ AL ++       
Sbjct: 185 VYQEELNSAIRFLKGESDELVKELEDKMYQLSLNQEYEAASVVRDQIEALKNLTQQQVAI 244

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES-TNAQILSYFLRQFYT 295
           S  +  D  S   ++N   IQ  +   G   G   F +    +  +  ++LS F++Q+Y 
Sbjct: 245 SGTDERDVISTAVDENAVYIQLFYIRNGNLVGRSQFTMDRGDDEVSIPEVLSGFIKQYYQ 304

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           D P P  IL+  +  E  L++   +++ G  V I VP +G+K++I++ A  NA  S  Q+
Sbjct: 305 DSPVPPEILVQYDIPEKDLIKKWLYEKSGLHVDIHVPLKGDKKRILDLAAKNAEMSMKQE 364

Query: 356 LSTEISHQ--MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
              +       +L++     +L  +P  IE +D S+I G  AVG +VV        ++YR
Sbjct: 365 QLKKDHQHPNEVLENLKTDLSLETLPYHIEGFDISNISGTDAVGSLVVFENGVPANSKYR 424

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           +FN+   +V+  DD AMM  V+ RRFS+++   + L              PD++++DGG 
Sbjct: 425 QFNIK--NVEGIDDFAMMAEVVHRRFSRILDENKPL--------------PDLILIDGGP 468

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQ+SAA+G L  LN++N I +I +AK  +           + + ++L+ +   +  + R+
Sbjct: 469 GQVSAAKGSLDNLNLDN-IPLIGLAKQYEH------IITPENKVIILSQKSDSMKLLMRI 521

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFA+++HR++R  K  +S LD I GIG  +KR LL+ FGTV  I  +S + L  +
Sbjct: 522 RDEAHRFAVSSHRRKRTAKLTHSALDGIPGIGESKKRALLEHFGTVDNIINASIKDLKQV 581

Query: 593 EGISKKIACKIYNHFHKNTS 612
           EGIS  +A KI ++F  + +
Sbjct: 582 EGISNNLAQKIVDYFENDDN 601


>gi|313802189|gb|EFS43421.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA2]
          Length = 672

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 190/646 (29%), Positives = 317/646 (49%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 13  TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 73  QNEVESLQLEYIWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T+ +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+S+ +
Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   E   F++G    + +++   M +A+   ++E A + RD L ALS     N  +  
Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +++S E     ++      + G  V+I VP++G+K  +++  
Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P RIE YD SHI G + VG MV
Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F++     +  DD A M  VL RR  +LI++ +             
Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   +   ++L      LY +QRLRDEAHRFAIT HR +R KA   S LD ++G+G  
Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDGVSGLGET 605

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R++ L+  FG+V+ + +++ + +  + G   K+A ++     ++  
Sbjct: 606 RRKALVSHFGSVRSLRKATVDDIVEVPGFGPKLAGEVVAALSQDKP 651


>gi|297161432|gb|ADI11144.1| excinuclease ABC subunit C [Streptomyces bingchenggensis BCW-1]
          Length = 681

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 178/634 (28%), Positives = 305/634 (48%), Gaps = 45/634 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+PE PGVY+  D  GRV+YVGKA +L+ R+ SY     N   R   M++   ++ +
Sbjct: 12  KPGQIPESPGVYKFRDEHGRVIYVGKAKSLRPRLSSYFQDLANLHPRTRTMVTTAASVEW 71

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+P + +T   + P +   R        
Sbjct: 72  TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPSLAVTLNEEFPRVQVMRGPKKKGVR 131

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ + R F +R+C+  VF+      RPCLL  I +CS PC G +++
Sbjct: 132 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKRSAQIGRPCLLGYIGKCSAPCVGRVTA 191

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++     E   F++G       ++ + M +A  + +YE A   RD + AL      N  
Sbjct: 192 EEHRRLAEEFCDFMAGRTGAYLRRLEQQMQEAAEEMEYEKAARLRDDIGALKRAMEKNAV 251

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +          A ++ + L+Q Y
Sbjct: 252 VLADATDADLIAIAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLY 311

Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    E    +      + G +V + +P++G+K+ ++     NA ++
Sbjct: 312 GEEKGDAVPKEVLVPALPELAEPVAQWLSDRRGSRVDLRIPQRGDKKDLMATVARNAQQA 371

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P RIE +D SH+ G   V  MVV  +   
Sbjct: 372 LALHKTKRASDLTTRSRALEEIAEALELDSAPLRIECFDISHLQGEDVVASMVVFEDGLA 431

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF---------------- 451
            K++YR+F +       QDD   M  V+ RRF + ++ + +                   
Sbjct: 432 RKSEYRRFQIKS--FAGQDDVRAMHEVVGRRFRRYLQEKTDTGEWGPEPDGETAQDGPLE 489

Query: 452 ------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505
                     +   F   P +V++DGG+ Q++AA+  L +L +++ + +  +AK  +   
Sbjct: 490 APAGPIDESGKPKRFAYPPQLVVVDGGRPQVAAAKRALDELGIDD-VAVCGLAKRLE--- 545

Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIG 564
             E +     + +VL      LY +QR+RDEAHRFAIT  R +R K+     LD + G+G
Sbjct: 546 --EVWLPDDEDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRGKRAKSMKAGALDTVPGLG 603

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
             R++ LL+ FG++K +  ++ E +  + G+ +K
Sbjct: 604 ESRRQALLKHFGSLKRLRAATVEQICEVPGVGRK 637


>gi|282854209|ref|ZP_06263546.1| excinuclease ABC, C subunit [Propionibacterium acnes J139]
 gi|282583662|gb|EFB89042.1| excinuclease ABC, C subunit [Propionibacterium acnes J139]
 gi|314923193|gb|EFS87024.1| excinuclease ABC subunit C [Propionibacterium acnes HL001PA1]
 gi|314966962|gb|EFT11061.1| excinuclease ABC subunit C [Propionibacterium acnes HL082PA2]
 gi|314981302|gb|EFT25396.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA3]
 gi|315091722|gb|EFT63698.1| excinuclease ABC subunit C [Propionibacterium acnes HL110PA4]
 gi|315093119|gb|EFT65095.1| excinuclease ABC subunit C [Propionibacterium acnes HL060PA1]
 gi|315103233|gb|EFT75209.1| excinuclease ABC subunit C [Propionibacterium acnes HL050PA2]
 gi|327327783|gb|EGE69559.1| excinuclease ABC subunit C [Propionibacterium acnes HL103PA1]
          Length = 672

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 190/646 (29%), Positives = 313/646 (48%), Gaps = 45/646 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 13  TIPTQPGVYRFSDEHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 73  QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T+ +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+ E +
Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITPEAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   E   F++G    + +++   M +A+   ++E A + RD L ALS     N  +  
Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +L+S E     ++      + G  V+I VP++G+K  +++  
Sbjct: 313 ASDGQVRDDGHGNAVPPLVLVSAEPTNLDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P R+E YD SHI G + VG MV
Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRMESYDISHIQGTNVVGSMV 432

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F +     +  DD   M  VL RR  +LI++ +             
Sbjct: 433 VFEDGMPRKSEYRRFIIKG--FEGSDDFTAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 491 SLIDPTTGAPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   +   ++L      LY +QRLRDEAHRFAIT HR +R KA   S LD + G+G  
Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHRSKRSKAMVESVLDSVPGLGET 605

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R++ L+  FG+V+ +  ++ + +A + G   K+A ++     ++  
Sbjct: 606 RRKALVSHFGSVRSLRMATVDDIAEVSGFGPKLAGEVVAALSQDKP 651


>gi|309972809|gb|ADO96010.1| Excinuclease ABC subunit C [Haemophilus influenzae R2846]
          Length = 609

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 208/616 (33%), Positives = 337/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I   +T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++  +  +           + MD
Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQVVRSVIERQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE    +Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLSEKSELEQLLTEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +   +   LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCELLNLPEIK-RMECFDISHTMGNQTVASCVVFNKEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A +I+     +
Sbjct: 594 ISPKLAERIFETLKND 609


>gi|145630645|ref|ZP_01786424.1| excinuclease ABC subunit C [Haemophilus influenzae R3021]
 gi|144983771|gb|EDJ91221.1| excinuclease ABC subunit C [Haemophilus influenzae R3021]
          Length = 609

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 211/616 (34%), Positives = 338/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I  T+T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    IS E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYISDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE    +Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +   +   LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCELLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWNKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A  I+     +
Sbjct: 594 ISLKLAETIFETLKND 609


>gi|256822171|ref|YP_003146134.1| excinuclease ABC subunit C [Kangiella koreensis DSM 16069]
 gi|256795710|gb|ACV26366.1| excinuclease ABC, C subunit [Kangiella koreensis DSM 16069]
          Length = 612

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 222/609 (36%), Positives = 340/609 (55%), Gaps = 23/609 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVYQML   G  LYVGKA NL  R+KSY      + +   +++ I +I  TVT 
Sbjct: 21  HLSHKPGVYQMLGKDGETLYVGKAKNLSNRVKSYFTRQYQSPKTELLVTYIEDIHTTVTE 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N+IK+ KPRFN+L RDDKS+PY+ ++     P L  HR +   +G YFGP
Sbjct: 81  TETEALLLENNLIKKYKPRFNVLFRDDKSYPYVFLSAG-DFPRLAYHRGAKKEKGDYFGP 139

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++++ +Q+TF +R C DS F +R+RPCL +QIKRC+ PC   IS E Y + V
Sbjct: 140 FPSSSAVRQSLSLIQKTFQIRQCEDSYFANRSRPCLQYQIKRCTAPCVDYISKEDYAKDV 199

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRM 242
              K F  G +  + +++ + M+ A+ + D+E A  +RD++  + H+          + +
Sbjct: 200 ENVKLFYQGKSEQVIKRLQKKMDVASQELDFELAARYRDQIKQMRHVMQQQVISGTASDL 259

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY-TDKPCPE 301
           D   + +   + CI   F   G   G  T+F K    S   +I+S FL  +Y +    P+
Sbjct: 260 DVIGVAYASGVCCILLVFIRQGMIVGNKTYFPKVPKHSDLQEIVSTFLGFYYLSGAEIPK 319

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++    E+   L+ +F +Q G KV I    +G+ ++    A  NA  S   KL+++ +
Sbjct: 320 QVVIESLPEDIEALQEAFGEQRGNKVTIRQASRGQVKEWQTFANKNAEHSLRAKLNSKSN 379

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L D  K   + H+PK +E +D SH  G   V   VV  ENG  K  YR FN+  + 
Sbjct: 380 FTQRLLDLQKALQMEHMPKHVECFDISHTQGQQTVASCVVFDENGPKKADYRIFNI--SG 437

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  L RR+ +L   ++ L              PD+VI+DGGKGQL+ A+ 
Sbjct: 438 ITGGDDYAAMQQALTRRYKRLKDEQQAL--------------PDLVIVDGGKGQLAKAEE 483

Query: 482 VLKKLNVENRITIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
           V  +L +++   +I ++KG  R  GME  +F  + + L+L+     ++FIQ +RDEAHRF
Sbjct: 484 VFNELELKSS-YLIGVSKGSDRKVGMEQIWFPGQHQPLLLDDDSKAMHFIQHIRDEAHRF 542

Query: 541 AITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR +RKK+   S L+EI G+G  R++ LL+ FG  + + ++S + +A   G+S  +
Sbjct: 543 AITKHRHQRKKSATKSLLEEIPGVGAKRRQALLRHFGGWQEVEKASVKDIAGAPGVSMSL 602

Query: 600 ACKIYNHFH 608
           A KIY++ H
Sbjct: 603 AQKIYDYLH 611


>gi|227495397|ref|ZP_03925713.1| excinuclease ABC subunit C [Actinomyces coleocanis DSM 15436]
 gi|226830944|gb|EEH63327.1| excinuclease ABC subunit C [Actinomyces coleocanis DSM 15436]
          Length = 667

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 212/665 (31%), Positives = 323/665 (48%), Gaps = 57/665 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ SY     N   R   M+    N+++
Sbjct: 10  KTADIPTQPGVYRFSDAQGRVIYVGKAKNLRNRLTSYFQDPANLHPRTQQMVFTACNVQW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  +EVEAL LE N IK   PRFN++++DD+S+PY+ +T   +IP +   R +   +  
Sbjct: 70  TVVNSEVEALTLEYNWIKEFDPRFNVMMKDDRSYPYLAVTVADEIPRMVVMRGARNKKVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP++ V A+  T + LQ+ F +R+C+D V R    + RPCLL  I++C  PCTG+IS 
Sbjct: 130 YFGPYSQVWALRDTADQLQKVFKVRTCSDGVLRRAQAQGRPCLLGYIEKCGAPCTGKISL 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            ++ E V E  +F+SG       ++   M  A  + ++E A   RD L AL  +   N  
Sbjct: 190 AEHKEKVAELCQFMSGKVGPYLSELRSEMKAAAAELEFEKAAKLRDNLQALEIVLERNAV 249

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           ++N     D F L  ++  + I       G+ RG   + L  +   T+AQ+L+   +Q Y
Sbjct: 250 VFNDGTDADVFGLASDELESGIYLFHVRGGRIRGVRGWVLHNEYGETDAQLLTTVFQQVY 309

Query: 295 TD-----------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331
            D                          P  IL+  E  E +++E    ++ G K  + V
Sbjct: 310 ADAIAANNLEKLDAVSVDDLEHLPTNAIPAEILVPIEPAEKAVVEEWLSQKRGIKATVKV 369

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDN 387
           P++GEKR ++E    NA  +     S            L++      L H P RIE +D 
Sbjct: 370 PQRGEKRTLLETVQKNAAETLRHHKSKRVNDLTQRGQALEEIATYLDLAHAPLRIECFDI 429

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNL-HPNDVKTQDDCAMMRMVLERRFSQLIKNE 446
           SH+ G   V  MVV  +    K  YR F +   +D    DD A M  +L RRF +L+  E
Sbjct: 430 SHLQGTDQVASMVVFEDGAPRKKDYRSFIVHKGSDGHPLDDTAAMSQILTRRFKRLVAEE 489

Query: 447 ENLNFHPK--------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRI 492
                  +               +   F   PD+V++DGG  Q++AA   L ++ ++  I
Sbjct: 490 NGAVGADEDGYLLASGPVDPLTGRPRKFSYRPDLVVVDGGLPQVNAAAATLAEMGID--I 547

Query: 493 TIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK- 551
            ++ +AK  +     E +  +    ++L      LY +Q LRDE+HRFAIT HRK+R K 
Sbjct: 548 PVVGLAKRLE-----EIWIPEDEYPVILPRTSAGLYLLQHLRDESHRFAITAHRKKRSKT 602

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
              S LD+I G+GP +++ LL  F  VK I  ++   L+ + GI   +   IY HFH   
Sbjct: 603 MLRSVLDDIPGVGPSKQKALLTHFKAVKHIQTATESELSEVAGIGPALVSTIYRHFHPEP 662

Query: 612 SHTPT 616
               T
Sbjct: 663 GKLDT 667


>gi|37679418|ref|NP_934027.1| excinuclease ABC subunit C [Vibrio vulnificus YJ016]
 gi|56749769|sp|Q7MM39|UVRC_VIBVY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|37198161|dbj|BAC93998.1| nuclease subunit of the excinuclease complex [Vibrio vulnificus
           YJ016]
          Length = 610

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 202/619 (32%), Positives = 321/619 (51%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY      + +   ++S I  I  TV
Sbjct: 11  LKTVTHQPGVYRMYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  H+ P +  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHRHPRVSLHRGAKKRKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS   Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYANRTRPCLMYQIGRCAGPCVSSVISDVDYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E V   + FL G ++ + E + + M  A+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 ELVGYLRLFLQGKDNQVLELLVQKMEIASQQLKFEDAAKFRDQIQAIRRVQEQQYVSEDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              MD         +ACI       G+  G+ + F K    +   ++   FL Q+Y    
Sbjct: 250 QEDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTNAQEVFDSFLTQYYLSHN 309

Query: 299 ----CPENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                P  I+L++E       ++++     G KV+      G + + ++ +  NA  + T
Sbjct: 310 EARTIPSRIILNQELAADVEAIQLALSDVAGRKVQFHTSPSGSRGRYLKLSNTNALTAMT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K      A+  I  R+E +D SH MG S +   VV    G VK +YR
Sbjct: 370 TKINHKMTINQRFKALRDVLAMDSIA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M   LERR+++ +  E+                PDV+ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMGQALERRYAKQLDVEK---------------IPDVIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++ +   +   R  +I IAKG  R  G+E      G+   L   DP L+ IQ
Sbjct: 472 GQLNRAHEIIAQYWGDWPKRPVMIGIAKGVTRKPGLETLITVDGDEFHLPSDDPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRKTSALEGIEGVGPKRRQALLKYTGGLQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 592 KVPGISHSLAEIIYQALKQ 610


>gi|315651796|ref|ZP_07904800.1| excinuclease ABC subunit C [Eubacterium saburreum DSM 3986]
 gi|315485926|gb|EFU76304.1| excinuclease ABC subunit C [Eubacterium saburreum DSM 3986]
          Length = 615

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 198/618 (32%), Positives = 313/618 (50%), Gaps = 30/618 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ + + +I  M+S+I    +
Sbjct: 8   ELKKLPRQPGVYIMHDKKDDIIYVGKAVSLKNRVRQYFQSSKDKSPKIKQMVSKIERFEY 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +PR+N +LRDDK++PYI +T K   P L   R     +  
Sbjct: 68  IVTDSELEALVLENNLIKENRPRYNTMLRDDKTYPYIKLTVKEDYPRLQIVRQIKKDKNK 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGPF+S +AV  TIN L + + LR+C  ++ +     RPCL + I +C  PC   IS E
Sbjct: 128 YFGPFSSGNAVRDTINLLNKVYKLRTCNRNLPKDIGEERPCLDYFIHQCDAPCQNYISKE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V E  +FLSG    + +KI   M + + +  +E A   RD L ++ H+       
Sbjct: 188 DYNKNVAEVLRFLSGDFEPIVDKIRAEMERLSAELKFEEAAKQRDLLNSVLHVTQKQKIT 247

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            +     D  ++  +   A +Q  F   G+  G    +++   +   A IL  F++QFY 
Sbjct: 248 SDDAKDRDIIAMARDDKDAVVQIFFIREGKMVGREHHYVQVAMDEEKADILESFIKQFYA 307

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  I+   + ++  L+      + G KV I VPK+G K K+++ A+ NA      
Sbjct: 308 GTPFVPSQIISQYDLKDGELICEWLSSKRGSKVNIIVPKKGSKEKLVDLAMKNAEIVLTK 367

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+  +  +LP    R+E YD S+I G  +VG MVV       K+
Sbjct: 368 DREKLQRQEAKSIGAVKEIEELLSLP-DLHRMEAYDISNISGVQSVGSMVVYENGIPKKS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V   +D A M+ VL RRF  +    +N           F   PD++++D
Sbjct: 427 DYRKFKIKT--VIGPNDYASMKEVLTRRFEHVTDGNDN----------GFNKLPDIILMD 474

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++    V+++  +   I +  + K                E + ++        I
Sbjct: 475 GGKGQVNICLQVIEEFGLH--IPVCGMVKDDNHRTRG---LYYNNEEIPIDTHSQGFLLI 529

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR  R K    S LD+I+GIG +R+R L++ F  ++ I  ++ E L
Sbjct: 530 TRIQDEAHRFAIEYHRSLRSKTQVKSILDDIDGIGSVRRRALMKHFKDIENIRNATVEEL 589

Query: 590 ASIEGISKKIACKIYNHF 607
             IEG++KK A  +   F
Sbjct: 590 MKIEGMNKKAAIAVNEFF 607


>gi|172040666|ref|YP_001800380.1| excinuclease ABC subunit C [Corynebacterium urealyticum DSM 7109]
 gi|171851970|emb|CAQ04946.1| excinuclease ABC, subunit C [Corynebacterium urealyticum DSM 7109]
          Length = 696

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/677 (28%), Positives = 312/677 (46%), Gaps = 82/677 (12%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY   D   RV+YVGKA NL+ R+ +Y    +    R   M+   N +++TV 
Sbjct: 17  TIPTQPGVYTFRDKHDRVIYVGKAKNLRARLSNYFQDFSQLHPRTRTMVQTANRVQWTVV 76

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EAL LE   IKR  PRFN++ RDDK++P + I+ K + P  Y +R        YFG
Sbjct: 77  GSEFEALNLEYTWIKRFNPRFNVMYRDDKTYPMLAISVKDRFPRAYLYRGPRRKGVRYFG 136

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T+ SL R F +R+CA  VFR      RPCLL  I RCS PC G+++  ++
Sbjct: 137 PYPKAWAIRETLESLTRVFPIRTCAPGVFRRHEALGRPCLLGYIDRCSAPCVGKVTEAEH 196

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              V +   FL+G    +  ++   M +A    D+E A   RD+L A+         ++ 
Sbjct: 197 RSLVDQFSSFLAGNTEPVLRRVRGEMEEAAENLDFERAASLRDQLQAMEKAMEKQAVVFS 256

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++  ++  A IQ      G+  G   + ++  S+ + A+++  F+ QFY  +
Sbjct: 257 DATDADVLAIEQDELEAAIQIFHVRGGRIHGQRGWVVEH-SDESRAEMIGQFITQFYGGE 315

Query: 298 ---------------------------------------------PCPENILLSEEAEET 312
                                                        P P  +L+ E     
Sbjct: 316 AELVAATETAVGGAASSHVDVGLATAINPASAAELGGLVGDVQVSPVPREVLVPELPAGN 375

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKD 368
           + L     +  G KV I VP++G+K+ ++  A  NA ++  Q          +    L+D
Sbjct: 376 ARLGAWLSELRGSKVTIRVPQRGDKKALLSNAHTNATQALAQHKLKRSGDITARSAALRD 435

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DD 427
             +   +   P RIE  D SHI G   V  +VV  +    K  YR++ +         DD
Sbjct: 436 LQEALWMDESPLRIECTDISHIQGTDVVASLVVFEDGLPKKADYRRYKIRDAAGDGHSDD 495

Query: 428 CAMMRMVLERRFSQLIK-----------------NEENLNFHPKKQEYSFPSWPDVVILD 470
            A +  V+ RRF +  +                  EE      ++ + +F   P + I+D
Sbjct: 496 VASIAEVVRRRFLRHKEDITAVPTGDDAGDRLEGEEELEQAKTEEPKRAFAYPPQLFIVD 555

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG  Q++AAQ VL +L V N +T++ IAK  +     E +  +    +++      LY +
Sbjct: 556 GGPPQVNAAQKVLDELGV-NDVTLVGIAKRLE-----ELWLPEDPYPVIIPRDSDALYLV 609

Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           Q +RDEAHRFAI  HR++R K    S LDE+ G+GP R++ L++ FG+V  +  ++ E +
Sbjct: 610 QHIRDEAHRFAINFHRQQRSKRMRASVLDEVPGLGPKRRQELVKHFGSVAKVRAATVEEI 669

Query: 590 ASIEGISKKIACKIYNH 606
           A + G    +A K++  
Sbjct: 670 AEVPGFGPALAKKVHEA 686


>gi|170732453|ref|YP_001764400.1| excinuclease ABC subunit C [Burkholderia cenocepacia MC0-3]
 gi|254245902|ref|ZP_04939223.1| Excinuclease ABC, C subunit [Burkholderia cenocepacia PC184]
 gi|229558023|sp|B1JYC2|UVRC_BURCC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|124870678|gb|EAY62394.1| Excinuclease ABC, C subunit [Burkholderia cenocepacia PC184]
 gi|169815695|gb|ACA90278.1| excinuclease ABC, C subunit [Burkholderia cenocepacia MC0-3]
          Length = 682

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 217/669 (32%), Positives = 328/669 (49%), Gaps = 70/669 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D AG VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDTAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R S   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISDEDYAVDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD------------SESTNAQ----- 284
            D  ++       C+       G++ G   +F                 E   A+     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGEEVEPAEAVDAT 317

Query: 285 -------------------------------ILSYFLRQFYTDKPCPENILLSEEAEETS 313
                                          +L  F+ Q Y     P  +++S       
Sbjct: 318 ADAPVDTVADQPAEEAGSARGAASAASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRD 377

Query: 314 LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKF 373
           LLE+   +Q G+KV +    QG++R  +  A  NA  +  + LS + S Q   +      
Sbjct: 378 LLEL-LSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALADTL 436

Query: 374 ALPHIP---KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430
           +         RIE +D SH MG +     VV   +    ++YR++N+    +   DD A 
Sbjct: 437 SYDSDDLATLRIECFDISHTMGEATQASCVVYHHHKMQSSEYRRYNI--TGITPGDDYAA 494

Query: 431 MRMVLERRFSQL---------IKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           MR VL RR+ ++         +     ++    +Q  +    P++V++DGGKGQ+  A+ 
Sbjct: 495 MRQVLTRRYEKMVEQAAQAAAVDEAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQ 554

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRF 540
           V  +L ++  + ++ +AKG  R  G+E      G   L L      L  + ++RDEAHRF
Sbjct: 555 VFTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRF 613

Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT  R +R KA   S L+E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS  +
Sbjct: 614 AITGMRAKRAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVEGISHAL 673

Query: 600 ACKIYNHFH 608
           A +IY   H
Sbjct: 674 AEQIYKQLH 682


>gi|161501797|ref|NP_761850.2| excinuclease ABC subunit C [Vibrio vulnificus CMCP6]
 gi|30173420|sp|Q8D8C7|UVRC_VIBVU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|319999509|gb|AAO11377.2| excinuclease ABC, C subunit [Vibrio vulnificus CMCP6]
          Length = 610

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 201/619 (32%), Positives = 321/619 (51%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY      + +   ++S I  I  TV
Sbjct: 11  LKTVTHQPGVYRMYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  H+ P +  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHRHPRVSLHRGAKKRKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS   Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYANRTRPCLMYQIGRCAGPCVSSVISDVDYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E V   + FL G ++ + E + + M  A+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 ELVGYLRLFLQGKDNQVLELLVQKMEIASQQLKFEDAAKFRDQIQAIRRVQEQQYVSEDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              MD         +ACI       G+  G+ + F K    +   ++   FL Q+Y    
Sbjct: 250 QEDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTNAQEVFDSFLTQYYLSHN 309

Query: 299 ----CPENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                P  I+L++E       ++++     G KV+      G + + ++ +  NA  + T
Sbjct: 310 EARTIPSRIILNQELAADVEAIQLALSDVAGRKVQFHTSPSGSRGRYLKLSNTNALTAMT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K      A+  I  R+E +D SH MG S +   VV    G VK +YR
Sbjct: 370 TKINHKMTINQRFKALRDVLAMDSIA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M   LERR+++ +  E+                PD++ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMGQALERRYAKQLDVEK---------------IPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++ +   +   R  +I IAKG  R  G+E      G+   L   DP L+ IQ
Sbjct: 472 GQLNRAHEIIVQYWGDWPKRPVMIGIAKGVTRKPGLETLITVDGDEFHLPSDDPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRKTSALEGIEGVGPKRRQALLKYTGGLQELKRASVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 592 KVPGISHSLAEIIYQALKQ 610


>gi|239814789|ref|YP_002943699.1| excinuclease ABC subunit C [Variovorax paradoxus S110]
 gi|239801366|gb|ACS18433.1| excinuclease ABC, C subunit [Variovorax paradoxus S110]
          Length = 653

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 216/644 (33%), Positives = 327/644 (50%), Gaps = 47/644 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PGVY+  D AG VLYVGKA NL+KR+ +Y   ++   RI HMIS+I  +  TV  +
Sbjct: 16  LPQLPGVYRYFDAAGAVLYVGKARNLKKRVANYFQKSHGGTRIGHMISKIVRMETTVVRS 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE N+IK LKPR+NIL RDDKS+PY+ I   H+ P L  +R +   +  YFGP+
Sbjct: 76  EAEALLLENNLIKTLKPRYNILFRDDKSYPYLKI-ASHEFPRLAYYRGAVDKKHRYFGPY 134

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            S  AV+++I  LQ+ F LR+C D+V+ +RTRPCLL+QIKRC+GPC G I+ E Y + V 
Sbjct: 135 PSAWAVKESIQLLQKVFRLRTCEDTVYANRTRPCLLYQIKRCTGPCVGYITPEAYAQDVA 194

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
            A+ FL G    +  K+   M +   K ++E A   R++++A+S + +           +
Sbjct: 195 SAEAFLRGDTQLVLSKLEARMTEHAEKLEFEQAAELRNQMSAISRVLHQQSIEIASDKDV 254

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE---------------------ST 281
           D  ++      AC+       G++ G   +F     +                       
Sbjct: 255 DILAVKVQGGKACVNLAMVRGGRHLGDRAYFPVHVEDAAQIHHGELDAEEGAAPAAADPI 314

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             Q+L  F+ Q Y D P P  ++LS       +  I   +Q G +V      + ++R  +
Sbjct: 315 EVQVLEAFIAQHYIDVPVPATLVLSHLVSRELIEAI--SQQAGARVTAVFQPREQRRHWL 372

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFAL---PHIPKRIEIYDNSHIMGCSAVGC 398
           E A  NA     + L+ E S Q   +       L        RIE +D SH  G +    
Sbjct: 373 EMAETNAGLQLARLLAEEGSQQARTRALADALELAPDDLDNFRIECFDISHTAGEATQAS 432

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI-----------KNEE 447
            VV   +     +YR++N+    +   DD A MR VL RR+ +L              + 
Sbjct: 433 CVVFEHHTMQNREYRRYNIEG--ITPGDDYAAMRQVLHRRYGKLAEAMAAETEALPPGDA 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
             +      +      P++V++DGGKGQ+S A+ V  +L +   + I+ + KG  R  G+
Sbjct: 491 ESDGGGAPPKTRTARMPELVLVDGGKGQVSMAREVFSELGLPLSL-IVGVEKGEGRKVGL 549

Query: 508 EKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIG 564
           E+     G   + L      L  + ++RDEAHRFAIT  R +R K     S L++I GIG
Sbjct: 550 EELVFADGREKVYLGKDSAALMLVAQIRDEAHRFAITGMRAKRAKVRVGGSQLEDIPGIG 609

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           P R+  LLQ FG ++ ++ +S E +AS+EGI+  +A +IY   H
Sbjct: 610 PKRRARLLQRFGGIRGVAAASVEDIASVEGIATDLAEEIYRALH 653


>gi|269126428|ref|YP_003299798.1| excinuclease ABC subunit C [Thermomonospora curvata DSM 43183]
 gi|268311386|gb|ACY97760.1| excinuclease ABC, C subunit [Thermomonospora curvata DSM 43183]
          Length = 684

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 193/644 (29%), Positives = 313/644 (48%), Gaps = 44/644 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P+ PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   M+     + +TV 
Sbjct: 13  TIPDSPGVYRFRDEHGRVIYVGKAKSLRSRLNSYFADFASLHPRTQTMLRTAAGVDWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      YFG
Sbjct: 73  GTEVEALQLEYSWIKEFNPRFNVRYRDDKSYPYLAVTLDEEFPRVMVMRGAKRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F +R+C   VF   RH  RPCLL  I +CS PC G I +  +
Sbjct: 133 PYSHAWAIRETVDLLLRVFPVRTCKPGVFKRARHSDRPCLLGYIDKCSAPCVGRIDAAAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
                +   F++G      ++I R M +A   E+YE A   RD + AL         +  
Sbjct: 193 RRLAEDFCAFMAGDTGRFIKEIERRMLEAAAAEEYERAARLRDDMRALQRALEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +   +   A +Q  +   G+ RG   + +   S+ T A ++ +FL Q Y + 
Sbjct: 253 EAVDCDVIAFAEDPLEAAVQVFYVRGGRIRGQRGWVVDKVSDVTTADLVEHFLLQLYGES 312

Query: 298 P-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  +L+  E  + + +     ++ G  V+I VP++G+K+ ++E    NA  +  Q  
Sbjct: 313 EAVPREVLVPAEPPDAAAMAELLAERRGGPVRIRVPRRGDKKALLETVARNAAEALRQHK 372

Query: 357 STEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
           +       +    L++  +   LP  P RIE YD S++ G + V  MVV  +    K++Y
Sbjct: 373 TRRAGDLTTRSKALQEIQEALELPEAPLRIECYDVSNLQGTNVVASMVVFEDGLARKSEY 432

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE-----------------------ENL 449
           R+F +    V+ QDD   +  V+ RRF + +                          E  
Sbjct: 433 RRFAIKT--VQGQDDVRSIHEVITRRFKRYLAERDKAGQEGGDAGGVLASYGFQEAGERE 490

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
              P      F   P++V++DGG  Q++AAQ  L++L V + + +  +AK  +     E 
Sbjct: 491 QSAPAGGARKFAYPPNLVVVDGGPAQVAAAQRALEELGVAD-VAVCGLAKRME-----EI 544

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRK 568
           +   + + ++L      L+ +QR+RDEAHRFA+  HR+RR K      LD + G+GP R+
Sbjct: 545 WLPGEEDPVILPRGSEGLFLMQRVRDEAHRFAVAYHRQRRSKAMTAGELDGVPGLGPARR 604

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             LL+ FG++K +  ++   +A + GI  + A +I    H    
Sbjct: 605 TALLKHFGSLKRLREATVAQIAEVPGIGPRTAEQIAAALHGGAP 648


>gi|25300658|pir||C90960 excinuclease ABC subunit C [imported] - Escherichia coli  (strain
           O157:H7, substrain RIMD 0509952)
 gi|25300671|pir||D85808 excinuclease ABC, chain C - Escherichia coli (strain O157:H7,
           substrain EDL933)
 gi|12516011|gb|AAG56928.1|AE005414_5 excinuclease ABC, subunit C; repair of UV damage to DNA
           [Escherichia coli O157:H7 str. EDL933]
 gi|13362119|dbj|BAB36074.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. Sakai]
 gi|73855218|gb|AAZ87925.1| excinuclease ABC, subunit C [Shigella sonnei Ss046]
 gi|209767058|gb|ACI81841.1| excinuclease ABC subunit C [Escherichia coli]
 gi|209767060|gb|ACI81842.1| excinuclease ABC subunit C [Escherichia coli]
 gi|209767062|gb|ACI81843.1| excinuclease ABC subunit C [Escherichia coli]
 gi|209767064|gb|ACI81844.1| excinuclease ABC subunit C [Escherichia coli]
 gi|209767066|gb|ACI81845.1| excinuclease ABC subunit C [Escherichia coli]
 gi|281178975|dbj|BAI55305.1| excinuclease ABC subunit C [Escherichia coli SE15]
          Length = 588

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 209/602 (34%), Positives = 329/602 (54%), Gaps = 31/602 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TVT TE EALLLE 
Sbjct: 1   MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + V   + FLSG
Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251
            +  +  ++   M  A+   ++E A   RD++ A+  +          + +D   +  + 
Sbjct: 180 KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T KLS + +    L 
Sbjct: 300 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
                  LP +  R+E +D SH MG   V   VV   NG ++ +YR++N+    +   DD
Sbjct: 360 ALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL RR+ + I + +                PDV+++DGGKGQL+ A+ V  +L+
Sbjct: 417 YAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQLAQAKNVFAELD 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A K
Sbjct: 522 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 581

Query: 603 IY 604
           I+
Sbjct: 582 IF 583


>gi|107022219|ref|YP_620546.1| excinuclease ABC subunit C [Burkholderia cenocepacia AU 1054]
 gi|116689165|ref|YP_834788.1| excinuclease ABC, C subunit [Burkholderia cenocepacia HI2424]
 gi|119367634|sp|Q1BXT2|UVRC_BURCA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038025|sp|A0K5W8|UVRC_BURCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|105892408|gb|ABF75573.1| Excinuclease ABC subunit C [Burkholderia cenocepacia AU 1054]
 gi|116647254|gb|ABK07895.1| Excinuclease ABC subunit C [Burkholderia cenocepacia HI2424]
          Length = 681

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 216/668 (32%), Positives = 327/668 (48%), Gaps = 69/668 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDTTGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R S   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISEEDYAVDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD------------SESTNAQ----- 284
            D  ++       C+       G++ G   +F                 E   A+     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTLAEGGLGEEVEPAEAVDAT 317

Query: 285 ------------------------------ILSYFLRQFYTDKPCPENILLSEEAEETSL 314
                                         +L  F+ Q Y     P  +++S       L
Sbjct: 318 ADAPVDTVPDQPAEEAGSARGAAAASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDL 377

Query: 315 LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFA 374
           LE+   +Q G+KV +    QG++R  +  A  NA  +  + LS + S Q   +      +
Sbjct: 378 LEL-LSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALADTLS 436

Query: 375 LPHIP---KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
                    RIE +D SH MG +     VV   +    ++YR++N+    +   DD A M
Sbjct: 437 YDSDDLATLRIECFDISHTMGEATQASCVVYHHHKMQSSEYRRYNI--TGITPGDDYAAM 494

Query: 432 RMVLERRFSQL---------IKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           R VL RR+ ++         +     ++    +Q  +    P++V++DGGKGQ+  A+ V
Sbjct: 495 RQVLTRRYEKMVEQAAQAAAVDEAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIARQV 554

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFA 541
             +L ++  + ++ +AKG  R  G+E      G   L L      L  + ++RDEAHRFA
Sbjct: 555 FTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFA 613

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT  R +R KA   S L+E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS  +A
Sbjct: 614 ITGMRAKRAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVEGISHALA 673

Query: 601 CKIYNHFH 608
            +IY   H
Sbjct: 674 EQIYKQLH 681


>gi|302546283|ref|ZP_07298625.1| excinuclease ABC subunit C [Streptomyces hygroscopicus ATCC 53653]
 gi|302463901|gb|EFL26994.1| excinuclease ABC subunit C [Streptomyces himastatinicus ATCC 53653]
          Length = 700

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 187/660 (28%), Positives = 312/660 (47%), Gaps = 66/660 (10%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+PE PGVY+  D  GRV+YVGKA +L++R+ SY     N   R   M++    + +
Sbjct: 10  KPGQIPESPGVYKFRDEHGRVIYVGKAKSLRQRLSSYFQDLANLHPRTRTMVTTAAAVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+P + +T   + P +   R +      
Sbjct: 70  TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPSLAVTLNEEFPRVQVMRGAKKKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A   A+ +T++ + R F +R+C+  VF+      RPCLL  I +CS PC G +S+
Sbjct: 130 YFGPYAQAWAIRETVDLMLRVFPVRTCSAGVFKRSAQIGRPCLLGYIGKCSAPCVGRVSA 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E   E   F++G       ++ + M QA  + +YE A   RD + AL      N  
Sbjct: 190 EEHRELADEFCDFMAGRTGTYIRRLEQQMQQAAEEMEYEKAARLRDDIGALKSAMEKNAV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +          A ++ + L+Q Y
Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTADLVEHALQQLY 309

Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    +    +     ++ G +V + +P++G+K+ ++     NA ++
Sbjct: 310 GEERGDAVPKEVLVPAVPDPAEPVTQWLSERRGSRVDLRIPQRGDKKDLMATVQRNAQQA 369

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P RIE +D SH+ G   V  MVV  +   
Sbjct: 370 LALHKTKRASDLTTRSRALEEIAEALGLDSAPLRIECFDISHLQGDDVVASMVVFEDGLA 429

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF---------------- 451
            K++YR+F +       QDD   M  V+ RRF + ++ ++                    
Sbjct: 430 RKSEYRRFQIKS--FAGQDDVRSMHEVVGRRFRRYLQEKQKSGEWEENAEPAQETPGEPA 487

Query: 452 ---------------------------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
                                          +   F   P +V++DGG+ Q++AA+  L 
Sbjct: 488 QETPEPGEPAQETPAEAPAVEETSGPLDDDGRPKRFAYPPQLVVVDGGQPQVAAAKRALD 547

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L V++ + +  +AK  +     E +   + + +VL      LY +QR+RDEAHRFAIT 
Sbjct: 548 ELGVDD-VAVCGLAKRLE-----EVWLPDEDDPVVLPRSSEGLYLLQRVRDEAHRFAITY 601

Query: 545 HRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            R +R KA    PLD + G+G  RK  LL+ FG+VK +  ++ E +  + G+ +K A  +
Sbjct: 602 QRSKRAKAMKAGPLDAVPGLGDSRKHALLKHFGSVKRLRAATVEQICEVPGVGRKTAETV 661


>gi|288917081|ref|ZP_06411451.1| excinuclease ABC, C subunit [Frankia sp. EUN1f]
 gi|288351450|gb|EFC85657.1| excinuclease ABC, C subunit [Frankia sp. EUN1f]
          Length = 758

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 197/694 (28%), Positives = 309/694 (44%), Gaps = 90/694 (12%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61
              +PE PGVY+  D  GRV+YVGKA NL+ R+ +Y    +    R  HM++  +++ +T
Sbjct: 11  PRSIPETPGVYRFRDEHGRVIYVGKAKNLRARLANYFADVHTLHPRTQHMVTTASSVEWT 70

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +  TEVEAL LE   IK   PRFN+  RDDKS+P + +T   + P L   R        Y
Sbjct: 71  IVSTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPSLAVTLYEEFPRLQVMRGPKRRGVRY 130

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSE 178
           FGP+A   A+ +T++ L R F  R+C+  VF+      RPCLL  I RCS PC G + + 
Sbjct: 131 FGPYAHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIDRCSAPCVGRVDAA 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            + E V +   F+SG       ++ R M  A   ++YE A   RD + AL         +
Sbjct: 191 THREIVEDFCDFMSGQTGRYLRRLEREMQAAADAQEYERAARLRDDIGALRRAVEKQAVV 250

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +   ++  A +Q  +   G+ RG   + +    + T   ++  FL Q Y 
Sbjct: 251 LPDGTDADVIAFAQDELEAAVQIFYVRAGRVRGQRGWVVDKLDDVTTGDLVEKFLTQEYL 310

Query: 296 DK----------------------------------PCPENILLSEEAEETSLLEISFFK 321
           D                                     P  IL+ E   +   +     +
Sbjct: 311 DGAGGSAAGSSGTGSSGTGSSDTGAGGTGADTGYAGEIPREILVPELPPDAEAVTELLSQ 370

Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPH 377
             G +V + VP++G+KR ++E    NA ++ T   +       +    L D  +   LP 
Sbjct: 371 ARGSRVDLRVPRRGDKRNLMETVERNAKQAFTLHRTKRAGDLTARSRALADLQEALELPD 430

Query: 378 IPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLER 437
            P RIE +D S++ G + V  MVV  +    K++YR+F +    V  QDD A M   + R
Sbjct: 431 APLRIECFDVSNMQGTNVVASMVVFEDGLPRKSEYRRFAIRG--VDGQDDVASMHETIHR 488

Query: 438 RFSQLIKNEEN----------------------------------LNFHPKKQEYSFPSW 463
           RFS+ +                                       L      +   F   
Sbjct: 489 RFSRYLAERARTGELAGYPGAEVADGGEAEAAGMAAMAEDVGGPSLRDPETGRPRRFAYP 548

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
           P++V++DGG  Q++AA   L +L+VE     + +  +AK  +     E +   + E ++L
Sbjct: 549 PNLVVVDGGPPQVAAAARALDELDVESGPGGVALCGLAKRLE-----EIWLPDQDEPVIL 603

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
                 LY +QR+RDEAHRFAIT HR++R      S LD + G+G  R++ LL+ FG+V 
Sbjct: 604 PRTSEALYLLQRVRDEAHRFAITYHRQKRSASMVVSALDGVPGLGDTRRKALLRQFGSVA 663

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            +  ++ E +A + GI  + A  I     ++   
Sbjct: 664 KVRAATAEEIAQVPGIGPRTAEAIVAALARSAPG 697


>gi|229845394|ref|ZP_04465525.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1]
 gi|229811702|gb|EEP47400.1| excinuclease ABC subunit C [Haemophilus influenzae 6P18H1]
          Length = 609

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 212/616 (34%), Positives = 337/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I  T+T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    IS E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYISDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE     Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSGLEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K E  + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQEREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A +I+     +
Sbjct: 594 ISPKLAERIFETLKND 609


>gi|254161967|ref|YP_003045075.1| excinuclease ABC subunit C [Escherichia coli B str. REL606]
 gi|253973868|gb|ACT39539.1| excinuclease ABC subunit C [Escherichia coli B str. REL606]
 gi|253978062|gb|ACT43732.1| excinuclease ABC subunit C [Escherichia coli BL21(DE3)]
 gi|323158604|gb|EFZ44618.1| excinuclease ABC, C subunit [Escherichia coli E128010]
          Length = 588

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/602 (34%), Positives = 329/602 (54%), Gaps = 31/602 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TVT TE EALLLE 
Sbjct: 1   MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + V   + FLSG
Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251
            +  +  ++   M  A+   ++E A   RD++ A+  +          + +D   +  + 
Sbjct: 180 KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T KLS + +    L 
Sbjct: 300 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
                  LP +  R+E +D SH MG   V   VV   NG ++ +YR++N+    +   DD
Sbjct: 360 ALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL RR+ + I + +                PDV+++DGGKGQL+ A+ V  +L+
Sbjct: 417 YAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQLAQAKNVFAELD 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 VSWDKNHPLLLGVAKGVDRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A K
Sbjct: 522 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 581

Query: 603 IY 604
           I+
Sbjct: 582 IF 583


>gi|110805886|ref|YP_689406.1| excinuclease ABC subunit C [Shigella flexneri 5 str. 8401]
 gi|30041609|gb|AAP17337.1| excinuclease ABC, subunit C [Shigella flexneri 2a str. 2457T]
 gi|56383551|gb|AAN43507.2| excinuclease ABC, subunit C [Shigella flexneri 2a str. 301]
 gi|81245030|gb|ABB65738.1| excinuclease ABC, subunit C [Shigella boydii Sb227]
 gi|110615434|gb|ABF04101.1| excinuclease ABC, subunit C [Shigella flexneri 5 str. 8401]
          Length = 588

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/602 (34%), Positives = 329/602 (54%), Gaps = 31/602 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TVT TE EALLLE 
Sbjct: 1   MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + V   + FLSG
Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251
            +  +  ++   M  A+   ++E A   RD++ A+  +          + +D   +  + 
Sbjct: 180 KDDQVLTQLISRMETASQNLEFEEAACIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T KLS + +    L 
Sbjct: 300 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
                  LP +  R+E +D SH MG   V   VV   NG ++ +YR++N+    +   DD
Sbjct: 360 ALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL RR+ + I + +                PDV+++DGGKGQL+ A+ V  +L+
Sbjct: 417 YAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQLAQAKNVFAELD 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A K
Sbjct: 522 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 581

Query: 603 IY 604
           I+
Sbjct: 582 IF 583


>gi|319792638|ref|YP_004154278.1| excinuclease ABC, c subunit [Variovorax paradoxus EPS]
 gi|315595101|gb|ADU36167.1| excinuclease ABC, C subunit [Variovorax paradoxus EPS]
          Length = 656

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 217/647 (33%), Positives = 327/647 (50%), Gaps = 50/647 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PGVY+  D AG VLYVGKA NL+KR+ +Y   ++   RI HMIS+I  +  TV  +
Sbjct: 16  LPQLPGVYRYFDAAGAVLYVGKARNLKKRVANYFQKSHGGTRIGHMISKIVRMETTVVRS 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE N+IK LKPR+NIL RDDKS+PY+ I   H  P L  +R S   +  YFGP+
Sbjct: 76  EAEALLLENNLIKTLKPRYNILFRDDKSYPYLKI-ASHAFPRLAYYRGSVDKKHRYFGPY 134

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            S  AV+++I  LQ+ F LR+C D+V+ +RTRPCLL+QIKRC+GPC G I+ E Y + V 
Sbjct: 135 PSAWAVKESIQLLQKVFKLRTCEDTVYANRTRPCLLYQIKRCTGPCVGYITPEAYAQDVA 194

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
            A+ FL G    +  K+ + M     K ++E A   R++++A+S + +           +
Sbjct: 195 SAEAFLMGDTQLVLSKLEQRMTTHAEKLEFEQAAELRNQMSAISRVLHQQSIEIASDKDV 254

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS---------------------EST 281
           D  ++      AC+       G++ G   +F                          +  
Sbjct: 255 DILAVKVQGGKACVNLAMVRGGRHLGDRPYFPVHVEDAAQIHHGEMDAEQGVEAVAADPI 314

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             Q+L  F+ Q Y D P P  ++LS       +  I   +Q G +V      + ++R  +
Sbjct: 315 EVQVLEAFIAQHYIDVPVPATLVLSHLVSRELIEAI--SQQAGGRVTAVFQPREQRRHWL 372

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH---IPKRIEIYDNSHIMGCSAVGC 398
           E A  NA     + L+ E S Q   +   +   L        R+E +D SH  G +    
Sbjct: 373 EMAETNAGLQLARLLAEEGSQQARTRALAEALELACDDLDNFRVECFDISHTAGEATQAS 432

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------------K 444
            VV   +     +YR++N+    +   DD A MR VL RR+ +L                
Sbjct: 433 CVVFEHHTMQNKEYRRYNIEG--ITPGDDYAAMRQVLHRRYGKLAEAMAAETEALPPGDA 490

Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504
             E +       +      P++V++DGGKGQ+S A+ V  +L +   + I+ + KG  R 
Sbjct: 491 ESEGIEGSEASPKTRTARMPELVLVDGGKGQVSMAREVFSELGLPLSL-IVGVEKGEGRK 549

Query: 505 AGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEIN 561
            G+E+     G   + L      L  + ++RDEAHRFAIT  R +R K     S L++I 
Sbjct: 550 VGLEELVFADGREKVYLGKDSAALMLVAQIRDEAHRFAITGMRAKRAKVRVGGSQLEDIP 609

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           GIGP R+  LLQ FG ++ ++ +S E +AS+EGI+  +A +IY   H
Sbjct: 610 GIGPKRRARLLQRFGGIRGVAAASVEDIASVEGIATDLAEEIYKALH 656


>gi|307131661|ref|YP_003883677.1| Excinuclease ABC subunit C [Dickeya dadantii 3937]
 gi|306529190|gb|ADM99120.1| Excinuclease ABC subunit C [Dickeya dadantii 3937]
          Length = 610

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 210/618 (33%), Positives = 334/618 (54%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY  +   + +   ++  I  I  T+
Sbjct: 11  LKTVTSQPGVYRMYDADDTVIYVGKAKDLKKRLSSYFRAQVASRKTEALVKSIRQIDVTI 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IKR +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLS-GDTHPRLSVHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF + +AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGNAVRETLMLLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVNGLVSEEEYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
             V   + FL G +  +  ++   M  A+ +  +E A   RD++ A+  +          
Sbjct: 190 RQVEYVRLFLLGKDQQVLTRLIERMETASRELRFEEAARIRDQIQAVRRVTEKQFVSGDG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +     +AC+   F   G+  G+ ++F K    +  A+++  F+ QFY     
Sbjct: 250 DDLDVIGVAFEAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELAEVVQTFVGQFYLQGSV 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P +ILL     E  LL  S  +Q G K++I    +G++ + ++ A  NAH + T K
Sbjct: 310 SRTLPSDILLDFSLPEHQLLAESLTEQAGRKIQIQTRPRGDRARYLKLARTNAHTALTTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + + Q  L        +     R+E +D SH MG   V   VV   +G ++++YR++
Sbjct: 370 LSQQSTVQQRLAALASVLGIE-KINRMECFDISHTMGEQTVASCVVFNADGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I   +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKSIDEGK---------------VPDVIVIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531
           L+ A+ V   L V   ++R  ++ +AKG  R AG+E  F +  GE + L    P L+ IQ
Sbjct: 472 LAQAKEVFASLQVPWDKSRPLLLGVAKGSDRKAGLETLFFEATGEGVALPADSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AI+ HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHNHAISGHRKQRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQPLMNASVEDIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
           ++ GIS  +A KI++   
Sbjct: 592 NVPGISHALAEKIFHALK 609


>gi|91773432|ref|YP_566124.1| excinuclease ABC subunit C [Methanococcoides burtonii DSM 6242]
 gi|119367668|sp|Q12W02|UVRC_METBU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91712447|gb|ABE52374.1| Excinuclease ABC, C subunit [Methanococcoides burtonii DSM 6242]
          Length = 604

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 203/619 (32%), Positives = 324/619 (52%), Gaps = 33/619 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
               +PE PGVY M DI+  ++Y+GKA +L+KR+  Y  S+ NH+ +   M+ +I ++ +
Sbjct: 4   DISNIPELPGVYLMKDISDNIIYIGKAKSLKKRVSQYFQSSKNHSSKTRAMVRKIADVDY 63

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +EV AL+LEAN++K+ +P +NI L+DDK +PY+ +T   K P ++  R        
Sbjct: 64  IVTESEVAALILEANLVKKNRPHYNIDLKDDKRYPYVKVTVNTKFPKIFITRRRLMDGAL 123

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ +V  V +T++ + + F ++ C   V     R CL + I RC  PC G I+ E+Y
Sbjct: 124 YFGPYTNVKPVRQTLDMISQIFRIKRCNRRVDGKGKRACLNYHIDRCYAPCNGSITPEEY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              V EA K   G      +++   MN   + ++YESA + RD++ AL  +     +   
Sbjct: 184 RNNVMEAVKLFKGETSGTIKELQEKMNIHAIAQEYESAAVIRDQIDALKSLSRQQTATAG 243

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT-DSESTNAQILSYFLRQFYTDK 297
            +  D  +   +     +Q  +   G   G     L   D+    A++   F++Q+Y D 
Sbjct: 244 NDDSDIIATASDDETVFVQIFYIRDGNMVGKADMSLSWGDATGNIARVTEEFIKQYYQDA 303

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH---RSHTQ 354
           P P  IL+     E  L+     ++    V+I VP++G K++++E A  NA         
Sbjct: 304 PVPPEILVQYPIPEKELVIKWLSEKAARSVQIQVPQRGNKKRLMEMAEQNAQMTLEQSHL 363

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           K S +      L       AL  +P  IE +D S+I G  AVG MVV        ++YR 
Sbjct: 364 KQSDKEQALQALLQLRDALALSTLPAHIEGFDISNISGTDAVGSMVVFENGLPANSKYRH 423

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           FN+    VK  DD AMM  V++RR++     ++ L              PD++++DGG G
Sbjct: 424 FNIKT--VKGIDDFAMMAEVVKRRYTHQKAEKDKL--------------PDLILIDGGPG 467

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG--EALVLNMRDPILYFIQR 532
           Q+SAA G LK+L ++  I ++ +AK  +          K G  E ++L      L  + R
Sbjct: 468 QVSAAMGSLKELQLD--IPLVGLAKRFEH-----IIVPKDGTDEVVILPHTSEALKVLMR 520

Query: 533 LRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+HRFA+++HR+RR  + ++S LD I GIG  RK+ LL  F +++ I  +S E L +
Sbjct: 521 VRDESHRFAVSSHRRRRTARLSHSELDTIPGIGASRKKALLNHFSSIEQIRHASVEELTA 580

Query: 592 IEGISKKIACKIYNHFHKN 610
           +EGISK +A +I  HF+K 
Sbjct: 581 VEGISKGLAERIVAHFNKE 599


>gi|319941052|ref|ZP_08015388.1| UvrABC system protein C [Sutterella wadsworthensis 3_1_45B]
 gi|319805409|gb|EFW02211.1| UvrABC system protein C [Sutterella wadsworthensis 3_1_45B]
          Length = 686

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 197/632 (31%), Positives = 306/632 (48%), Gaps = 46/632 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PG Y+     G  LYVGKA +L+ R+ SY      + RI  M+S+I  I  TVT 
Sbjct: 54  TLPHLPGCYRYFGADGTCLYVGKARDLKNRVSSYFRKTGLSPRIALMVSRIARIETTVTR 113

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK LKP +NI LRDD S+PYI I      P L  +R     +  +FGP
Sbjct: 114 SEAEALLLENNLIKTLKPHYNIRLRDDASYPYIRIGAG-DFPRLSYYRGGVDKRSKFFGP 172

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  A    I  LQ+ F LR+C +SVF++R+RPCLL QI RC+ PC G I+ E Y    
Sbjct: 173 YPSSSAARTAIEMLQKAFQLRTCEESVFKNRSRPCLLGQIGRCTAPCCGLITKEAYAADC 232

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC 244
             A++FL G + ++   + + M  A+    +E A   RDR+AAL+ +++         D 
Sbjct: 233 RRAEQFLEGRSIDVLNDLEKRMWAASDAWQFEEAAHLRDRIAALTQMRHQQAIETTGGDV 292

Query: 245 FSLYHN----KNLACIQTCFFHFGQNRGTCTFFLK--------TDSESTNAQILSYFLRQ 292
            +        + + C+       G++ G    F K         D   +  +++  F+ Q
Sbjct: 293 DADIVAASIGQGIVCVNLAMVRGGRHLGDRAIFPKAGDRAPTAQDLMPSKGEVIEAFVSQ 352

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYG---YKVKITVPKQGEKRKIIEQALINAH 349
            Y + P P  +++  +  +  L              +V +    Q  +R+ +E  +  A 
Sbjct: 353 HYAELPIPALLIVEPDPADPELPARLSSLLTDLAGRRVPVVSEPQETRRRWLEMCIQGAQ 412

Query: 350 RSHTQKLSTEISHQMILKDFTKK-------FALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402
            +  ++L+   +    L D                +   +E +D SH  G +     VV 
Sbjct: 413 IALARRLAESGTQTARLNDLMAVLGPSFAPKNDDPMEFSVECFDISHTQGEATQASCVVF 472

Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462
            E     + YR+FN+    ++  DD A M+ VL RR++   + E  L             
Sbjct: 473 REGRMQSSLYRRFNI--AGIEPGDDYAAMKQVLARRYAPAARGEAEL------------- 517

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-----KGEA 517
            P VV++DGG+GQ+  A+ V + L ++    I+ +AKG  R  G+E          + E 
Sbjct: 518 -PTVVLIDGGRGQVEMAREVFEDLGLDVG-AIVGVAKGEGRKTGLETLVFPVIDGHRREP 575

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFG 576
           L+L      L  I  +RDEAHRFAIT  R +R K    S L++++G+GP R+  LL  FG
Sbjct: 576 LILGEMSRALMLIAEIRDEAHRFAITGMRAKRAKTRNTSKLEDLSGVGPKRRAKLLGHFG 635

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            +K +  +S E +A + GIS+K+A +IY+  H
Sbjct: 636 GMKQLKNASAEDIAQVPGISRKLAEQIYSQLH 667


>gi|71066567|ref|YP_265294.1| excinuclease ABC subunit C [Psychrobacter arcticus 273-4]
 gi|90111758|sp|Q4FQ48|UVRC_PSYA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|71039552|gb|AAZ19860.1| Excinuclease ABC subunit C [Psychrobacter arcticus 273-4]
          Length = 614

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 198/614 (32%), Positives = 313/614 (50%), Gaps = 29/614 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+ML   G +LYVGKA +L+ R+ SY        +   ++++I+NI   +T
Sbjct: 22  QRLPNLPGVYKMLGKNGDILYVGKAKSLKSRVNSYFAKTIDHPKTRALVARIHNIETIIT 81

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYF 122
            +E EALLLE N+IK  +P +N+LLRDDKS+ Y+ I+     P L   R      +G +F
Sbjct: 82  RSETEALLLEQNLIKEYRPPYNVLLRDDKSYLYVFISADQPYPRLAYGRGKVNHQKGCFF 141

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S  A ++T+  +Q+ F +R C ++ F+ R RPCL +QIKRC  PC G +S+E+Y E
Sbjct: 142 GPFPSAHAAKETLVLMQKMFQMRQCTNTFFKQRKRPCLEYQIKRCRAPCVGLVSAEEYSE 201

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--N 240
            V+   +FL G + ++   +   M  +  + D+E A+ +RD+L+ L  +Q          
Sbjct: 202 DVNNTIRFLKGDSSDIHSALIEKMEASAEELDFEKAVFYRDQLSMLREVQAKQAVYTVQG 261

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KP 298
             D  ++     + C+       G+  G   +F   DS    A  LS F+  FY      
Sbjct: 262 EADVIAIASQVGMTCVNVLTVRGGRVLGGKNYFPDVDSSQPLADNLSAFITSFYFQVTDD 321

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I+LS E  +   +  +    +G KV I    +  + + ++ A +N + +   KL  
Sbjct: 322 LPAEIMLSHELPDQVAVSEALASHFGSKVVIKTNVREHRAEWLDLAKLNTNNALKTKLGD 381

Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
            +                      RIE +D SH MG + +G  VV  ++G  +  YR++ 
Sbjct: 382 YLELHARFGALKDVLADITDRTIDRIECFDISHTMGEATIGGCVVFDQSGSRRRDYRQYA 441

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +H   +   DD A M+ VL RR+ +                      PD++++DGGKGQL
Sbjct: 442 IHD--IVGGDDYAAMKQVLTRRYKK-------------------QPLPDLLLIDGGKGQL 480

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
             A+ VL +L +     +I +AKG  R AG+E       E L L M    L+ +  +RDE
Sbjct: 481 GIAKEVLTELGMLGDTLLIGVAKGEGRKAGLEVLHFIDHEPLDLPMDSKALHLLMHIRDE 540

Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT HRK+R K+ + S L+ I G+G  R+R LL  FG ++ +  +S + LA ++GI
Sbjct: 541 AHRFAITAHRKKRDKRRSSSVLEVIPGLGEKRRRDLLNHFGGLQQLLGASQQELAGVQGI 600

Query: 596 SKKIACKIYNHFHK 609
              +A  +Y   H+
Sbjct: 601 GPILAKTVYKVLHE 614


>gi|260893662|ref|YP_003239759.1| excinuclease ABC, C subunit [Ammonifex degensii KC4]
 gi|260865803|gb|ACX52909.1| excinuclease ABC, C subunit [Ammonifex degensii KC4]
          Length = 622

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 206/617 (33%), Positives = 325/617 (52%), Gaps = 18/617 (2%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           + ++ +P  PGVY   D  G V+YVGKA +L++R+KSY   N  + ++  ++ ++ N+ F
Sbjct: 7   LKAQSLPAEPGVYLFKDERGEVIYVGKAASLRQRVKSYFQGNP-SPKVEAILRRVANLEF 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  EVEAL+LEAN+IK  +PR+N++L+DDKS+PYI +T + + P +   R     +  
Sbjct: 66  MVTDNEVEALILEANLIKLHRPRYNVVLKDDKSYPYIKVTVEEEYPRVLFARRRDDKRAR 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+    AV +T+  L+  F  RSC+  V R  +RPCL + IKRC GPCTG++  E Y
Sbjct: 126 YFGPYTKAGAVYETLRFLRTLFPYRSCSGPVPRPNSRPCLNYHIKRCPGPCTGQVDPEVY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              +     FL G    +  ++ R M QA  +  +E A ++RDRL AL  I      + +
Sbjct: 186 RRNIDSLCLFLEGRYRQVLRQLEREMKQAAEELAFERAAVYRDRLQALKLILERQRVVSS 245

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           R   +D   L   ++ A         G+  G  +F L    E     +  +  + +    
Sbjct: 246 RPEDLDVVGLARQEDRAQAVVLLVREGRLIGQESFPLTIAPEEEQGLLTEFLKQYYGVIA 305

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
               + L+         L      + G++VKI VP++G K++++E A  NA  +  + L 
Sbjct: 306 SSFPSELVLPSPPLEEALVDLLRSRAGFEVKIVVPRRGHKKELLELAEKNAWAALNEGLR 365

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              +    L    +   LP +P RIE YD SH+ G + V  MVV       K+ YR+F L
Sbjct: 366 EAEAQARSLSSLAEALGLPRVPHRIEGYDASHLQGVAPVAVMVVFVGGKPYKSGYRRFAL 425

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDGGKGQL 476
                   +D   +R  L RRF +  + EE L       Q+  F   PD++++DGG GQ 
Sbjct: 426 TQP--GKPNDYQALRETLYRRFMRARQEEEALAEGRITPQQAKFLPLPDLILVDGGAGQA 483

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK--GEALVLNMRDPILYFIQRLR 534
             A+ VL++L  +  I +  +AK        E  +     G  ++L    P L+ +QR+R
Sbjct: 484 GVAREVLEELGYD--IPVFGLAKEE------EWIYPPHQAGNPIILPRSSPALHLLQRVR 535

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFA+  HR+RR+K +  S L EI GIGP R+  LL++F T++ ++R+S E LA + 
Sbjct: 536 DEAHRFALGFHRRRREKESLRSLLSEIEGIGPARRSALLRAFPTLEALARASVEELARVP 595

Query: 594 GISKKIACKIYNHFHKN 610
           G+++  A  +Y +FH++
Sbjct: 596 GMTRPAAEAVYRYFHRS 612


>gi|237748847|ref|ZP_04579327.1| excinuclease ABC subunit C [Oxalobacter formigenes OXCC13]
 gi|229380209|gb|EEO30300.1| excinuclease ABC subunit C [Oxalobacter formigenes OXCC13]
          Length = 632

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 213/621 (34%), Positives = 337/621 (54%), Gaps = 33/621 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + +Q+P  PGVY+  D   ++LYVGKA +L KR+ +Y    + + RI  M+ +I  +  T
Sbjct: 31  AVKQLPHLPGVYRYFDKNDKLLYVGKARDLIKRVSTYFQKASPSPRIAMMVERIARMETT 90

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +EVEAL+LE+N+IK L P +NI+ RDDKS+PY+ IT + K P +  +R +      +
Sbjct: 91  VTRSEVEALILESNLIKTLHPHYNIIFRDDKSYPYLKITGQ-KYPRMVYYRGNVDRHNQF 149

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF +  AV +TI  LQR F LR+C DSVF++RTRPCLL+QI RCSGPC   IS E Y 
Sbjct: 150 FGPFPNSWAVRETIQILQRVFRLRTCEDSVFKNRTRPCLLYQINRCSGPCVDLISEEGYR 209

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           +    A +FL G    +  ++   M +   + ++E A   R+++A+LS +        + 
Sbjct: 210 KDTENAVRFLRGEQTVILGELQEKMERHAERLEFEEAAFVRNQIASLSQVLQQQSMESDK 269

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT------DSESTNAQILSYFLRQ 292
              +D  ++   +  AC+       G++ G    F         ++E    Q+L  FL Q
Sbjct: 270 VADVDIIAVVVREGRACVNLAMVRGGRHLGDRAVFPGNLGSGVDENEKLEIQVLKAFLAQ 329

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
            Y D   P  I+++ + +E +LL ++  +Q G+++ I    QG++R  +E A  NA  + 
Sbjct: 330 HYIDGQIPGTIVVNMDFDEPALL-VALSEQCGHRIHIVTQPQGQRRLWLEMAQKNAEIAL 388

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSHIMGCSAVGCMVVVGENGFVK 409
            + L    +    +K   +   L         IE +D SH  G +     V+        
Sbjct: 389 ARVLLQSDTQLSRVKSLIELMNLDIEDPNDLRIEAFDISHTQGEAVQASCVIFHHCAMQN 448

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           ++YR++N+    +   DD A M+ VL RR+ +L+ +E+ +              PD+V++
Sbjct: 449 SEYRRYNI--AGITPGDDYAAMKQVLTRRYEKLVGHEDLM--------------PDIVLV 492

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILY 528
           DGGKGQ+S A  V  +L  +  + I+ +AKG  R  G+E      G     L     +L 
Sbjct: 493 DGGKGQVSMATQVFAELGHDLSL-IVGVAKGEGRKVGLETLVYADGRLPQELGKDSKVLM 551

Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            I ++RDEAHRFAIT  R +R KK   S L+EI G+G  R++ LL  FG+V+ I+ +S +
Sbjct: 552 LIAQIRDEAHRFAITGMRAKRDKKRQASRLEEIEGVGAKRRQKLLARFGSVRQIADASVD 611

Query: 588 TLASIEGISKKIACKIYNHFH 608
            LA++EGIS+++A +IY+  H
Sbjct: 612 DLATVEGISRRLAQQIYDQLH 632


>gi|213965651|ref|ZP_03393845.1| excinuclease ABC, C subunit [Corynebacterium amycolatum SK46]
 gi|213951810|gb|EEB63198.1| excinuclease ABC, C subunit [Corynebacterium amycolatum SK46]
          Length = 682

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 194/667 (29%), Positives = 305/667 (45%), Gaps = 62/667 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+ LD  GRVLYVGKA NL+ R+ +Y         R   M+   + + +TV 
Sbjct: 13  TIPTEPGVYRFLDSTGRVLYVGKAKNLRARLSNYFQDLTRLHPRTRQMVQSASKVTWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVEAL LE   IKR  PRFN++ RDDKS+P + ++     P L+ +R        YFG
Sbjct: 73  HNEVEALQLEYTWIKRFNPRFNVMYRDDKSYPMLAVSVGELYPRLFLYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF  +    RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSKGVFNRQQALGRPCLLGYIDKCSAPCVGRVSAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V     F+SG    +  ++   M +A  + D+E A   RD LAA+  +      + +
Sbjct: 193 REIVRGFTSFMSGNTGPVTRRLKNEMEEAAAELDFERAASLRDNLAAIDKVMERQSVVLS 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILS---------- 287
                D  +L  ++  A +Q      G+  G   + ++   E    +             
Sbjct: 253 DAADADFIALATDELEAAVQIFHVRAGRIYGQRGWVVEKSGEYATTEFQEGETDPSLGGL 312

Query: 288 --YFLRQFYTDKP----------------CPENILLSEEAEETSLLEISFFKQYGYKVKI 329
              FL QFY D                   P  IL+    ++   +        G  V I
Sbjct: 313 LTQFLTQFYGDAAKHADVDGDESTTAAQVVPREILVQATPDDLDEVAAFLADIRGTNVDI 372

Query: 330 TVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIEIY 385
            VP++G+KR ++E    NA  +  Q          +    L +      +   P RIE  
Sbjct: 373 RVPQRGDKRTLMETVQKNAAEALRQHKLKRSGDLTTRSQALSELQDALFMDEAPLRIECT 432

Query: 386 DNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQ--- 441
           D SHI G   V  +VV  +    K+ YR++ +       + DD   +  V+ RRF +   
Sbjct: 433 DISHIQGTDVVASLVVFEDGLPKKSDYRRYRIKDAAGDGRSDDVGSIAEVVRRRFLRHNE 492

Query: 442 ------------LIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
                        ++   +      +    F   P + I+DGG  Q++AAQ VL +L V 
Sbjct: 493 DKLAMPDDASEMFVEETTDAVDEQSRSSRKFAYPPQLFIVDGGAPQVAAAQAVLDELEVT 552

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549
           + +T++ IAK  +     E +     E L+L      +Y IQR+RDEAHRFAI  HR++R
Sbjct: 553 D-VTLVGIAKRLE-----ELWIPDDDEPLILPRNSEAMYLIQRIRDEAHRFAINYHRQQR 606

Query: 550 KKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            K   S  LD I G+GP R+  L++ FG+V  + ++S E +  + G    +A  ++++ H
Sbjct: 607 SKRMRSSVLDGIKGLGPARRSELVKHFGSVAALKKASVEQIEEVAGFGPMLAKTVHDYLH 666

Query: 609 KNTSHTP 615
            +   + 
Sbjct: 667 PDEKSSE 673


>gi|68248608|ref|YP_247720.1| excinuclease ABC subunit C [Haemophilus influenzae 86-028NP]
 gi|81336965|sp|Q4QPI7|UVRC_HAEI8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|68056807|gb|AAX87060.1| UvrABC system protein C [Haemophilus influenzae 86-028NP]
          Length = 609

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/616 (33%), Positives = 336/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I   +T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE    +Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSELEQLLTEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A  I+     +
Sbjct: 594 ISLKLAETIFETLKND 609


>gi|291539853|emb|CBL12964.1| excinuclease ABC, C subunit [Roseburia intestinalis XB6B4]
          Length = 626

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 195/625 (31%), Positives = 328/625 (52%), Gaps = 21/625 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
             +++P+ PGVY M D    ++Y+GKA +L+KR+  Y   ++    +   M+ QI    +
Sbjct: 7   ELKKLPDQPGVYIMHDSHDAIIYIGKAVSLRKRVHQYFQPSHDEGIKKAQMVKQIARFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK   P++N +LRDDK++PYI +T     P +   R     +  
Sbjct: 67  IITDSELEALVLECNLIKEHCPKYNTMLRDDKTYPYIRVTVGEDFPRVLFSRQQKKDKSR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  + + + LR+C   + R   + RPCL + I +C  PC G IS E
Sbjct: 127 YFGPYTSAGAVKDTIELINKLYQLRTCNRVLPRDTGKERPCLNYHIHQCQAPCQGYISRE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y E +  A +FL+G    + + +   MN+A+   ++E AI +R+ L ++  I       
Sbjct: 187 EYRERIDAAVEFLNGNYAPILKSLEEKMNEASENLEFEKAIEYRELLGSVRQIAQKQKIT 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           +      D  +L  +   A +Q  F   G+  G   F+++  +E T +QIL+ FL+QFY+
Sbjct: 247 HTDGEDKDIIALASDDRDAVVQVFFIRDGKLIGRDHFYVRVGTEDTKSQILTTFLKQFYS 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  P  I+L EE E+  +L     ++ G +V I VP++G K K++E A  NA     +
Sbjct: 307 GTPFIPREIMLPEEIEDHEVLAEWLTEKRGARVYIRVPQKGMKEKLVELAQKNAELVLSQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      +  +  R+E +D S+I G   VG M+V  +    ++
Sbjct: 367 DREKIKREEGRTIGAMKEIEHLLGMEGLS-RVEAFDISNINGFETVGSMIVYEKGKPKRS 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469
            YRKF L    +   DD A M  VL RRF+  ++ ++ L      +E  SF  +PD++++
Sbjct: 426 DYRKFKLKT--ITGPDDYASMHEVLTRRFTHGMQEKKELAEREMSEEYGSFTRFPDLIMM 483

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++ A  VL +L +   I +  + K              + + + ++        
Sbjct: 484 DGGRGQVNIALKVLDELKI--NIPVCGMVKDDNHRTRG---LYYQNKEIPIDRTSEGFKL 538

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DEAHRFAI  HR  R K   +S LD+I GIGP R++ L++ F +++ I  +S E 
Sbjct: 539 ITRIQDEAHRFAIEYHRSLRSKEQVHSVLDDIPGIGPARRKALMRRFQSLEAIREASEEE 598

Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613
           LA  E ++++ A  +Y+   ++   
Sbjct: 599 LAKTESMNEQAARAVYSFLREDKHG 623


>gi|319426044|gb|ADV54118.1| excinuclease ABC, C subunit [Shewanella putrefaciens 200]
          Length = 609

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 197/611 (32%), Positives = 325/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+ G V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 16  SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLDNVKTQALVSHIHHIDVTLTHSET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYIL++ +H+ P L  HR     +G YFGP+ +
Sbjct: 76  DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ R+RPCL +Q+ RCS PC G++S+  Y E V  A
Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +   +   M QA  +++YE A   RD++ AL  +    +   N   MD  
Sbjct: 195 SLFLKGKDQQVISTLVAKMEQAAQQQEYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            +++   +AC    F   G+  G+ +++    +++   ++L  F+ QFY +    +  P+
Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +       K  I    + ++   +  A+ NA  +   +LS + +
Sbjct: 315 EVVISHNFEELHELEAAVSIALNKKFSIKTNVRADRASFLRLAVTNATNAVITRLSHKNT 374

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L     R+E +D SH MG S V   VV    G  K +YR++N+    
Sbjct: 375 VEQRFVLLEEILELSTPIHRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 432

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++    +                PD++ +DGG GQL  AQ 
Sbjct: 433 ITPGDDYAAMKQAITRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  ++++    +I +AKG  R  G+E   +   E +  L    P L+ IQ +RDE+H
Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   L  + GIS 
Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 598 EMAQTIHDALR 608


>gi|295395307|ref|ZP_06805511.1| excision endonuclease subunit UvrC [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971858|gb|EFG47729.1| excision endonuclease subunit UvrC [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 637

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 207/633 (32%), Positives = 326/633 (51%), Gaps = 33/633 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
            + ++P  PGVY   D  GRV+YVGKA NL+ R+ SY         R   M+   +++ +
Sbjct: 9   KTGEIPTDPGVYTFRDADGRVIYVGKAKNLRNRLNSYFADPAGLHPRTFTMVHTASSVNW 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE   I    PRFN++ RDDKS+PY+ IT + + P ++  R        
Sbjct: 69  TVVKTEVEALQLEWTWINEFNPRFNVMFRDDKSYPYLAITVRDEYPRVFVTRGKRKKGMK 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISS 177
           YFGPF +V A+ ++++ L + F +R+CA +VF   + + RPCLL  I +CS PC G+I  
Sbjct: 129 YFGPFTAVWAIRESLDLLLKAFPVRTCAKTVFDRAQRQGRPCLLGYIDKCSAPCVGKIEK 188

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           ++Y E V    +F+SG +        + M +A+   D+E A   RD + AL  + N N  
Sbjct: 189 DEYAELVKSVIEFMSGNSGKFISVRKQAMKEASANLDFEEAARLRDEITALETVLNKNAV 248

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + ++    D F LY  +  A +Q      G+ RG   + ++   + T  +++   +RQ Y
Sbjct: 249 VLSQNADADVFGLYAEELEASVQVFHIRGGRIRGQRGWIIERMEDKTPGELIEDAIRQAY 308

Query: 295 TD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
           TD      P  IL S E  +  LL        G K+ + VP++GEK+ ++E A +NAH++
Sbjct: 309 TDVDTHAIPTEILTSHEPADKELLGEWLRSVRGAKIDMRVPQRGEKKAVLETAELNAHKA 368

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L +  +   L   P RIE  DNSH  G + VG +VV  +   
Sbjct: 369 LALHKTRRASDLTTRSQALNEIHEALDLTEPPLRIECIDNSHTAGQNVVGSLVVFEDGLP 428

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K  Y++F++  +    +DD + M  V+ RRF + ++N         K +  F   P ++
Sbjct: 429 KKKDYKRFSVTGD--AARDDTSAMYNVVSRRFERYLEN-------MGKDDTGFGYRPSLL 479

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           ++DG   Q+ AA   L  L + + IT++ +AK  +     E +       ++L      L
Sbjct: 480 VVDGALPQVHAATQALHDLGIPD-ITVVGLAKRLE-----EVWVPWDEFPVILPRNSEGL 533

Query: 528 YFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           + +QR+RDEAHRFAIT HR++R      S LD I+G+G  +++ LL+ FG+VK I  +S 
Sbjct: 534 FMLQRIRDEAHRFAITYHRQKRSASMTRSELDAIDGLGAAKQKALLKHFGSVKKIKAASV 593

Query: 587 ETLASIEGISKKIACKIYNHF---HKNTSHTPT 616
           E L    GI  ++A KI+ HF     +  +  T
Sbjct: 594 EELMQARGIGPQLADKIHGHFTQAQPDEENAGT 626


>gi|120599189|ref|YP_963763.1| excinuclease ABC subunit C [Shewanella sp. W3-18-1]
 gi|189038097|sp|A1RKL4|UVRC_SHESW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|120559282|gb|ABM25209.1| Excinuclease ABC subunit C [Shewanella sp. W3-18-1]
          Length = 609

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 197/611 (32%), Positives = 325/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+ G V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 16  SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLDNVKTQALVSHIHHIDVTLTHSET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYIL++ +H+ P L  HR     +G YFGP+ +
Sbjct: 76  DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ R+RPCL +Q+ RCS PC G++S+  Y E V  A
Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +   +   M QA  +++YE A   RD++ AL  +    +   N   MD  
Sbjct: 195 SLFLKGKDQQVISTLVAKMEQAAQQQEYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            +++   +AC    F   G+  G+ +++    +++   ++L  F+ QFY +    +  P+
Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +       K  I    + ++   +  A+ NA  +   +LS + +
Sbjct: 315 EVVISHNFEELHELEAAVSIALNKKFSIKTNVRADRASFLRLAVTNATNAVITRLSHKNT 374

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L     R+E +D SH MG S V   VV    G  K +YR++N+    
Sbjct: 375 VEQRFVLLEEILELSTPIYRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEG-- 432

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++    +                PD++ +DGG GQL  AQ 
Sbjct: 433 ITPGDDYAAMKQAITRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  ++++    +I +AKG  R  G+E   +   E +  L    P L+ IQ +RDE+H
Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   L  + GIS 
Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 598 EMAQTIHDALR 608


>gi|260439219|ref|ZP_05793035.1| excinuclease ABC subunit C [Butyrivibrio crossotus DSM 2876]
 gi|292808234|gb|EFF67439.1| excinuclease ABC subunit C [Butyrivibrio crossotus DSM 2876]
          Length = 614

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 196/625 (31%), Positives = 325/625 (52%), Gaps = 33/625 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P+ PGVY M D    ++YVGKA +L+ R++ Y  S+ NHT++I  M+S I    +
Sbjct: 11  ELKKLPDKPGVYIMHDEKDEIIYVGKAISLKNRVRQYFQSSRNHTNKIKQMVSNIRRFEY 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +PR+N +L+DDK++P+I IT     P +   R+    +  
Sbjct: 71  IITDSELEALVLECNLIKLHRPRYNTMLKDDKTYPFIKITVNEPFPRIISSREMKRDKAR 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGPF S  AV  TI  L +T+ +R+C  ++ +   + RPCL + I +C+ PC G IS E
Sbjct: 131 YFGPFTSGKAVNDTIELLNKTYGIRTCRRNLPKDTGKERPCLNYHIGQCTAPCQGYISQE 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + + +   FL G  + +  K+   M +A+ K ++E A  +R+ L ++  +       
Sbjct: 191 DYGKLIDQCIDFLEGRYNGITRKLTGLMYEASEKMEFEQAAAYRNMLESVKFVSQKQKIT 250

Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            + M   D  +   +     +Q  F   G+  G   + ++   +   ++I++ F++Q+Y 
Sbjct: 251 NSDMQDRDIVAASIDYKDCVVQVFFIRNGKMIGREHYHMRLAGDEKRSEIITDFIKQYYA 310

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
             P  P  I+L E   +  L+     ++ G+ VK  VPK+G+K K++E A  NA    ++
Sbjct: 311 GTPYIPPEIMLQENLIDEELIGRWLTERAGHNVKFLVPKRGQKEKLVELAEKNANMVLNQ 370

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              + L  E      +K+  +   L H   R+E +D S+I G   VG MVV  +    KN
Sbjct: 371 DREKILKEEARTTGAVKEIERLTGL-HDIHRMEAFDISNISGAQPVGSMVVFTDGRPRKN 429

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V   DD + MR VL RR +              + + SF   PD++++D
Sbjct: 430 DYRKFRIKT--VTGPDDYSSMREVLTRRLTH-------------ESDSSFDIKPDLIMMD 474

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL  LN+   I +  + K               G+ + +N        I
Sbjct: 475 GGKGQVNIALEVLNDLNIS--IPVCGMVKDDNHRTRA---LWYNGKEVEINTGSEAFKLI 529

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR  R +    S LD+I+GIGP+R++ L++ F  + +I ++S E L
Sbjct: 530 TRIQDEAHRFAIEFHRNLRSREQVKSILDDIDGIGPVRRKALMKHFKDIDVIKKASVEEL 589

Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614
             +  ++   A K++  F+K    T
Sbjct: 590 CDVPSMNLAAAEKVHEFFNKQERGT 614


>gi|269795310|ref|YP_003314765.1| excinuclease ABC subunit C [Sanguibacter keddieii DSM 10542]
 gi|269097495|gb|ACZ21931.1| Excinuclease ABC subunit C [Sanguibacter keddieii DSM 10542]
          Length = 703

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 195/653 (29%), Positives = 310/653 (47%), Gaps = 47/653 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  GRV+YVGKA NL+ R+ SY         R   M++  +++ +TV 
Sbjct: 13  EIPTTPGVYRFRDDHGRVIYVGKAKNLRARLSSYFQDLAALHPRTQTMVTTASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T    +P     R S  +   YFG
Sbjct: 73  GTEVEALALEYSWIKEYDPRFNVKYRDDKSYPYLAVTMGESVPRAQVMRGSKRVGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PFA   A+ +T++ L R F +R+C+  V++      RPCLL  I +C+ PC   IS + +
Sbjct: 133 PFAHAWAIRETLDLLLRVFPIRTCSAGVYKRAQQSGRPCLLGYIDKCAAPCVERISKDAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F++G       ++   M+ A    DYE A   RD + AL      N  +  
Sbjct: 193 RALADDFCAFMAGDTAKFMRRLRDEMSMAAQNLDYERAARLRDDIGALERAMEKNAVVLQ 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L  ++  A +Q      G+ RG   + ++   + T+A+++ + L+Q Y   
Sbjct: 253 DGTDADIFALTGDELEAAVQVFHVRGGRIRGQRGWVVEKVEDLTDAELVEHLLQQVYGTA 312

Query: 298 P---------------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
                            P  +L+         +        G +V I VP++G+KR++  
Sbjct: 313 DEAAGGDAQAARDSGLVPREVLVPVLPAHLEQMTTWLSGLRGARVDIRVPQRGDKRELAA 372

Query: 343 QALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398
             L NA  +     +       +  + L++  +   L   P RIE YD S  MG      
Sbjct: 373 TVLKNAEHALALHRTRRAGDLTNRSLALREIQEALDLDSAPLRIECYDISTTMGTHQAAS 432

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNE----------- 446
           MVV  +    K++YR F +   D    +DD A M  V+ RRF + +              
Sbjct: 433 MVVFEDGLARKSEYRTFGVKGPDGDGARDDTAAMYEVITRRFRRYLAERSDSSDIELETF 492

Query: 447 --ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504
             E     P      F   P++V++DGG  Q++AA   L  L +++ + +  +AK  +  
Sbjct: 493 GGEVDAETPATDRKRFAYPPNLVVVDGGPPQVAAAAKALADLGIDD-VALCGLAKRLE-- 549

Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGI 563
              E +   +   ++L      LY +QR+RDEAHRFAIT HRK+R K    S LD + G+
Sbjct: 550 ---EVWVPGEEYPVILQRSSEGLYLLQRVRDEAHRFAITAHRKKRGKGMTVSELDSVPGL 606

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           GP RK  LL+ FG++K +  +S E +A+++G+ ++ A  +    H   +   T
Sbjct: 607 GPARKGALLRHFGSLKRLRAASAEEIATVQGMGQRTAEAVVAALHPAGAPDAT 659


>gi|219871019|ref|YP_002475394.1| excinuclease ABC subunit C [Haemophilus parasuis SH0165]
 gi|219691223|gb|ACL32446.1| excinuclease ABC subunit C [Haemophilus parasuis SH0165]
          Length = 615

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 214/615 (34%), Positives = 334/615 (54%), Gaps = 32/615 (5%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY+M D  G ++YVGKA +L+KR+ SY  SN  + +   ++SQI +I  T+T +E
Sbjct: 17  PHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSNLASRKTEALVSQIAHIDTTITHSE 76

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLE N IK  +P++N+LLRDDKS+PYIL+T +H+ P L   R S  I G YFGP+ 
Sbjct: 77  TEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-QHQHPRLASFRGSKKIAGEYFGPYP 135

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVH 185
           +  AV +T+N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y + V 
Sbjct: 136 NAGAVRETLNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGVYSQREYDQQVE 195

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
             + FL G +  + E +   M +A    D+E+A   RD++  +  +           + +
Sbjct: 196 YVRLFLQGKDQQVIEHLIGKMEKAAEDLDFEAAARFRDQIQQMRVVTEKQFVSNERLDDL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKP 298
           D  S+ +   +AC+   F   G+  G+ ++F K  + +  A++   F+ QFY      + 
Sbjct: 256 DIISIAYQHGIACVHILFVRQGKMLGSRSYFPKVPNHTEFAELSDTFIGQFYLQMNQHRT 315

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I++     E   LE    +Q G+KV IT   +GEK + +  A  NA  + T +L  
Sbjct: 316 IPHQIIIDHSVSEVDALEKVLSEQAGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQ 375

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +   Q   +      +LP I  R+E +D SH MG   V   VV  ENG +K+ YR+FN+ 
Sbjct: 376 DARIQTRYEALQAVLSLPKIA-RMECFDISHTMGEQTVASCVVFDENGPLKSDYRRFNIE 434

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   DD A M   L +R+ + +  E+                PD++ +DGGKGQL+ 
Sbjct: 435 G--ITGGDDYAAMEQALLKRYDKPLPPEK---------------IPDIIFIDGGKGQLNR 477

Query: 479 AQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLR 534
           A      L VE   ++  +I +AKG +R AG+E   + K  + + L    P L+ IQ +R
Sbjct: 478 ALDTFANLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIR 537

Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE+H  AI+ HRK+R+KA   S L+ I G+G  R+ LLL+  G ++ +  ++ + + S+ 
Sbjct: 538 DESHNHAISGHRKKRQKAFTESGLEAIAGVGAKRRHLLLKYLGGMQGVKSATLDEIKSVP 597

Query: 594 GISKKIACKIYNHFH 608
           GIS  +A  I++  +
Sbjct: 598 GISVSLAEIIFDTLN 612


>gi|254361941|ref|ZP_04978072.1| exinuclease UvrC [Mannheimia haemolytica PHL213]
 gi|153093488|gb|EDN74468.1| exinuclease UvrC [Mannheimia haemolytica PHL213]
          Length = 612

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/620 (33%), Positives = 336/620 (54%), Gaps = 33/620 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D  G ++YVGKA +L+KR+ SY  S   + +   +++ + NI  T+T 
Sbjct: 12  NVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLASYFRSQLSSKKTEALVANLANIETTITH 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +P++N+LLRDDKS+PYIL+T KHK P L   R S  I G YFGP
Sbjct: 72  SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHKHPRLTAFRGSKKIAGEYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +V AV +T+N LQ+ F +R C D+ +++R+RPCL +QI RC  PC     S  +Y + 
Sbjct: 131 YPNVTAVRETLNLLQKIFPIRQCEDTYYKNRSRPCLQYQIGRCLAPCVEGCYSPVEYDQQ 190

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V+  + FL G +H + E + + M  A    D+E A   RD++ ++  +Q          +
Sbjct: 191 VNLVRLFLQGKDHQVVEHLVQKMEDAAEALDFEGAARFRDQIQSVRAVQEKQFVSNDRLD 250

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+   F   G+  G  ++F K  S +   ++   F+ QFY      
Sbjct: 251 DLDIISIVYQNGIACVHILFVRQGKVLGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQH 310

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I++  +  E  +L EI   +       +    +G+K++ +  A  NA  +   +
Sbjct: 311 RTIPNQIVIDHQLSESKALSEILSEQAGHKVSILDNAIRGDKQRYLALARTNAMAALVLQ 370

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  E   Q   +   +   +  I  R+E +D SH MG   V   VV  ENG +K+ YR+F
Sbjct: 371 LKQESHIQSRYQALKEMLKMSEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 429

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   L +R+++ +  E+                PD++ +DGGKGQ
Sbjct: 430 NIEG--ITGGDDYAAMEQALLKRYNRELPPEK---------------IPDIIFIDGGKGQ 472

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A  V  KL+VE   ++  +I +AKG +R AG+E   + K  + + L      L+ IQ
Sbjct: 473 LNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLETLIISKWDKEIHLPPDSLALHLIQ 532

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H+ AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + 
Sbjct: 533 HIRDESHQHAISGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 592

Query: 591 SIEGISKKIACKIYNHFHKN 610
           S+ GISK +A  I++    +
Sbjct: 593 SVPGISKALAEVIFDTLKNS 612


>gi|325578727|ref|ZP_08148774.1| excinuclease ABC subunit C [Haemophilus parainfluenzae ATCC 33392]
 gi|325159551|gb|EGC71683.1| excinuclease ABC subunit C [Haemophilus parainfluenzae ATCC 33392]
          Length = 608

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 208/614 (33%), Positives = 338/614 (55%), Gaps = 32/614 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   ++S I++I  T+T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVSSIHHIDTTITSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R +  I G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGTKKIAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ +Q+ F +R C +SV+ +R+RPCL +QI RC  PC    ++ E+Y + V  
Sbjct: 132 AGAVRETLSLMQKLFPVRQCENSVYNNRSRPCLQYQIGRCCAPCVPGYVTDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRDLDFEGAARYRDQIQAVRAVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++ + F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTATFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  + +E + LE    +Q G KV I    +G+K K ++ A INA  +   +L   
Sbjct: 312 PNSIIVDHKLDEKTELEALLTEQAGRKVVIQESAKGDKGKYLQLAQINAKAALATQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +   +   +P I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMHERYQALCELLDMPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + +  ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALKKRYDRDLDEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V   LNV   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LEVFHHLNVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HR++R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ + +AS+ G
Sbjct: 534 ESHNHAISGHRQKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKNATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFH 608
           ISK +A KI+    
Sbjct: 594 ISKALAEKIFETLK 607


>gi|261493656|ref|ZP_05990175.1| exinuclease UvrC [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261310656|gb|EEY11840.1| exinuclease UvrC [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 612

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/620 (33%), Positives = 336/620 (54%), Gaps = 33/620 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D  G ++YVGKA +L+KR+ SY  S   + +   +++ + NI  T+T 
Sbjct: 12  NVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLASYFRSQLSSKKTEALVANLANIETTITH 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +P++N+LLRDDKS+PYIL+T KHK P L   R S  I G YFGP
Sbjct: 72  SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHKHPRLTAFRGSKKIAGEYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +V AV +T+N LQ+ F +R C D+ +++R+RPCL +QI RC  PC     S  +Y + 
Sbjct: 131 YPNVTAVRETLNLLQKIFPIRQCEDTYYKNRSRPCLQYQIGRCLAPCVEGCYSPVEYDQQ 190

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V+  + FL G +H + E + + M  A    D+E A   RD++ ++  +Q          +
Sbjct: 191 VNLVRLFLQGKDHQVVEHLVQKMEDAAEALDFEGAARFRDQIQSVRAVQEKQFVSNDRLD 250

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+   F   G+  G  ++F K  S +   ++   F+ QFY      
Sbjct: 251 DLDIISIVYQNGIACVHILFVRQGKVLGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQH 310

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I++  +  E  +L EI   +       +    +G+K++ +  A  NA  +   +
Sbjct: 311 RTIPNQIVIDHQLSESKALSEILSEQAGHKVSILDNAIRGDKQRYLALARTNAMAALALQ 370

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  E   Q   +   +   +  I  R+E +D SH MG   V   VV  ENG +K+ YR+F
Sbjct: 371 LKQESHIQSRYQALKEMLKMSEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 429

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   L +R+++ +  E+                PD++ +DGGKGQ
Sbjct: 430 NIEG--ITGGDDYAAMEQALLKRYNRELPPEK---------------IPDIIFIDGGKGQ 472

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A  V  KL+VE   ++  +I +AKG +R AG+E   + K  + + L      L+ IQ
Sbjct: 473 LNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLETLIISKWDKEIHLPPDSLALHLIQ 532

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H+ AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + 
Sbjct: 533 HIRDESHQHAISGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 592

Query: 591 SIEGISKKIACKIYNHFHKN 610
           S+ GISK +A  I++    +
Sbjct: 593 SVPGISKALAEVIFDTLKNS 612


>gi|261494323|ref|ZP_05990817.1| exinuclease UvrC [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261309972|gb|EEY11181.1| exinuclease UvrC [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 612

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/620 (33%), Positives = 336/620 (54%), Gaps = 33/620 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D  G ++YVGKA +L+KR+ SY  S   + +   +++ + NI  T+T 
Sbjct: 12  NVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLASYFRSQLSSKKTEALVANLANIETTITH 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +P++N+LLRDDKS+PYIL+T KHK P L   R S  I G YFGP
Sbjct: 72  SETEALLLEHNYIKENQPKYNVLLRDDKSYPYILLT-KHKHPRLTAFRGSKKIAGEYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +V AV +T+N LQ+ F +R C D+ +++R+RPCL +QI RC  PC     S  +Y + 
Sbjct: 131 YPNVTAVRETLNLLQKIFPIRQCEDTYYKNRSRPCLQYQIGRCLAPCVEGCYSPVEYDQQ 190

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V+  + FL G +H + E + + M  A    D+E A   RD++ ++  +Q          +
Sbjct: 191 VNLVRLFLQGKDHQVVEHLVQKMEDAAEALDFEVAARFRDQIQSVRAVQEKQFVSNDRLD 250

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+   F   G+  G  ++F K  S +   ++   F+ QFY      
Sbjct: 251 DLDIISIVYQNGIACVHILFVRQGKVLGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQH 310

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I++  +  E  +L EI   +       +    +G+K++ +  A  NA  +   +
Sbjct: 311 RTIPNQIVIDHQLSESKALSEILSEQAGHKVSILDNAIRGDKQRYLALARTNAMAALALQ 370

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  E   Q   +   +   +  I  R+E +D SH MG   V   VV  ENG +K+ YR+F
Sbjct: 371 LKQESHIQSRYQALKEMLKMSEIK-RMECFDISHTMGNQTVASCVVFDENGPLKSDYRRF 429

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   L +R+++ +  E+                PD++ +DGGKGQ
Sbjct: 430 NIEG--ITGGDDYAAMEQALLKRYNRELPPEK---------------IPDIIFIDGGKGQ 472

Query: 476 LSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A  V  KL+VE   ++  +I +AKG +R AG+E   + K  + + L      L+ IQ
Sbjct: 473 LNRALDVFTKLDVEWDKSKPLLIGVAKGVERKAGLETLIISKWDKEIHLPPDSLALHLIQ 532

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H+ AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ E + 
Sbjct: 533 HIRDESHQHAISGHRKKRQKAFTESGLESIAGVGAKRRQALLKYLGGMQGVKSATLEEIQ 592

Query: 591 SIEGISKKIACKIYNHFHKN 610
           S+ GISK +A  I++    +
Sbjct: 593 SVPGISKALAEVIFDTLKNS 612


>gi|270308386|ref|YP_003330444.1| excinuclease ABC, C subunit [Dehalococcoides sp. VS]
 gi|270154278|gb|ACZ62116.1| excinuclease ABC, C subunit [Dehalococcoides sp. VS]
          Length = 607

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 212/613 (34%), Positives = 330/613 (53%), Gaps = 27/613 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY M +  G ++YVGKA  L+ R+KSY    +    +   ++SQIN + + +T
Sbjct: 12  SLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFAPPSRLEPKTRQLVSQINELEYLIT 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EAL+LE N+IKR +P FN+ L+DDK FPY+ IT   K P +Y  R  +   G YFG
Sbjct: 72  GSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYITRSMADDGGRYFG 131

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  +V  T+  L+  F  RSC  +    R+RPCL + I +C  PCTG+IS + Y   
Sbjct: 132 PFASTRSVRHTLQVLKELFRFRSCNRTEPEKRSRPCLEYDIHQCLSPCTGKISKQDYDHL 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYN 240
           + +A  FL G    + + + + MN+A+ + DYE+A + RD+++++  +         +  
Sbjct: 192 ISQAILFLEGKQDKVLKLLNKLMNEASARLDYETAALRRDQISSIKEVIEGQQLAARVSG 251

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299
             D  +     +L+ +Q  F   G+  G  +F L+   E     ILS F++QFY      
Sbjct: 252 EQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFSLQGTREEKPGDILSEFVKQFYHSSTQI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355
           P  I+      +  +LE    ++ G KV+IT   +G+ + +I     NA     ++  + 
Sbjct: 312 PPKIVTQYPLSDREILEKWLSERRGGKVQITAGLRGQPKDLINIVAENAREQLKQARIKN 371

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS+ ++    L++      LP  P+RIE YD S+I G +AVG MVV       K  YR+F
Sbjct: 372 LSSAVTLTDALEELQTALGLPLPPQRIEGYDISNIQGTNAVGSMVVFENGKPQKAHYRRF 431

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    VK  DD +M++ V+ RRF +L K+             SF   P ++++DGGKGQ
Sbjct: 432 RIKT--VKGADDFSMLKEVISRRFGRLNKD---------NAGESFARRPSLMLIDGGKGQ 480

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           LS+ +  L  L +E +  +I +AK  +     E +   K   + L    P L  +QR+RD
Sbjct: 481 LSSVKETLDTLGLEGQ-AVIGLAKEFE-----EIYLPGKSAPIRLTANSPALQLLQRVRD 534

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFA+  H   R K+   S LD I GIGP R+RLL+++FG+V  I ++S + L+ ++G
Sbjct: 535 EAHRFALGYHLNIRHKSGLTSTLDGIPGIGPSRRRLLIKTFGSVAGIRQASLDELSQVKG 594

Query: 595 ISKKIACKIYNHF 607
           I++ +A  I    
Sbjct: 595 INQALALSIKELL 607


>gi|229846976|ref|ZP_04467082.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1]
 gi|229810060|gb|EEP45780.1| excinuclease ABC subunit C [Haemophilus influenzae 7P49H1]
          Length = 609

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 210/616 (34%), Positives = 336/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I   +T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASKNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE     Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSGLEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K E  + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQEREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A +I+     +
Sbjct: 594 ISPKLAERIFETLKND 609


>gi|167039707|ref|YP_001662692.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X514]
 gi|300915044|ref|ZP_07132359.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561]
 gi|307724967|ref|YP_003904718.1| excinuclease ABC subunit C [Thermoanaerobacter sp. X513]
 gi|229557872|sp|B0K680|UVRC_THEPX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|166853947|gb|ABY92356.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X514]
 gi|300888768|gb|EFK83915.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X561]
 gi|307582028|gb|ADN55427.1| excinuclease ABC, C subunit [Thermoanaerobacter sp. X513]
          Length = 615

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 199/618 (32%), Positives = 334/618 (54%), Gaps = 18/618 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
             + +PE PGVY M D +G+++YVGKA  L+ R++ Y  +      ++  M+S + +  +
Sbjct: 6   KLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKEKQLPKVKVMLSHVEDFEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI +T   + P +   R        
Sbjct: 66  IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP++S  AV +TI  +++ F +R+C  ++ +   + R CL + I  CS PCT +I+ E
Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNKNIEKDMGKVRECLYYHIGLCSAPCTNKINKE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y++ V +A  FL G    L +K+  +M +A  +  +E A   RD++ A+         +
Sbjct: 186 DYIKLVDQAVLFLDGKRDWLIQKLKEDMKKAAEELRFEEAARIRDQIFAIERTSEKQKVV 245

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  S+  + +++CIQ  F   G+  G   +++K        +I+S F++QFY 
Sbjct: 246 SVGEDEQDIISMARSADISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352
             P  P+ I+   E +E+ LL     ++ G KV IT+P +G+K+++++    NA  +  +
Sbjct: 306 GAPYIPKEIITDVELDESELLSEWLSQKRGNKVFITIPVRGKKKELVDMVYQNALEALKN 365

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              +  EIS   ++ + +    L +   RIE YD S+  G   VG MVV  +    K+QY
Sbjct: 366 DISIREEISKDQVVLELSNLVGLDYAK-RIEAYDISNTRGQDNVGSMVVFVDGKPKKSQY 424

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471
           RKFN+    V+ QDD   MR V+ERRF   I+ +E +     ++ +  F   PD++ +DG
Sbjct: 425 RKFNIK--YVEGQDDYESMREVIERRFLHAIEEKELIEKGELEEDKAKFAEMPDLIFVDG 482

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G G ++A   VL  L +   I +  + K  K         V     + + M       I 
Sbjct: 483 GIGHVNAVLQVLSGLGIS--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTTKAFRLIA 537

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++++EAHRFAIT H++++ K   S L  I GIG  R + L  +F +++ I R+S E L  
Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGKKRAKALYDAFKSIEEIKRASVEDLKK 597

Query: 592 IEGISKKIACKIYNHFHK 609
           +EG+++K A  +Y +F K
Sbjct: 598 VEGMNEKAAQAVYEYFRK 615


>gi|43290|emb|CAA27329.1| unnamed protein product [Escherichia coli]
          Length = 588

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/602 (34%), Positives = 329/602 (54%), Gaps = 31/602 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TVT TE EALLLE 
Sbjct: 1   MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + V   + FLSG
Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251
            +  +  ++   M  A+   ++E A   RD++ A+  +          + +D   +  + 
Sbjct: 180 KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTKLSEVVETFVGQFYLQGSQMRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T KLS + +    L 
Sbjct: 300 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
                  LP +  R+E +D SH MG   V   VV   NG ++ +YR++N+    +   DD
Sbjct: 360 ALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL RR+ + I + +                PDV+++DGGKGQL+ A+ V  +L+
Sbjct: 417 YAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQLAQAKNVFAELD 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A K
Sbjct: 522 GHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 581

Query: 603 IY 604
           I+
Sbjct: 582 IF 583


>gi|153208613|ref|ZP_01946870.1| excinuclease ABC, C subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165919012|ref|ZP_02219098.1| excinuclease ABC, C subunit [Coxiella burnetii RSA 334]
 gi|212218610|ref|YP_002305397.1| excinuclease ABC subunit C [Coxiella burnetii CbuK_Q154]
 gi|226698346|sp|B6J7K3|UVRC_COXB1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|120575874|gb|EAX32498.1| excinuclease ABC, C subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165917267|gb|EDR35871.1| excinuclease ABC, C subunit [Coxiella burnetii RSA 334]
 gi|212012872|gb|ACJ20252.1| excinuclease ABC subunit C [Coxiella burnetii CbuK_Q154]
          Length = 609

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 222/618 (35%), Positives = 339/618 (54%), Gaps = 26/618 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P   GVYQM D  G+V+YVGKA NLQKR+ SY      + +   M++Q+ +I+ T+
Sbjct: 10  LKTLPTGSGVYQMQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQSIQTTI 68

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T  E EALLLEA+ IK+ +PR+N+LLRDDKS+PY+ +    K P L  +R +    G YF
Sbjct: 69  TRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKAPGRYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  +V + +  +Q+ F LR C++S F++RTRPCL +QIKRC+ PC G ++ ++Y  
Sbjct: 129 GPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCVGYVNEQEYRR 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            V +A  F  G N  +  K+   M  A+    +E A  +RD++  L  +Q          
Sbjct: 189 QVEDAILFFEGKNDQVIIKLTERMEVASENLVFEEAAHYRDQIRQLRRLQKQQIITGGKG 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296
            +D   +  +         F   G+  G   FF  T   +T    L  F+ Q+Y     +
Sbjct: 249 NIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYYLSPLRN 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              PE I+ SE  E+   ++ +       K+ IT  K+   ++    A +NA ++ +Q L
Sbjct: 309 GDIPERIVTSEPLEDRLWIQRALSSGLNRKLAITDQKRAPYKQWQAMAALNAAQALSQHL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + + +  + L+   K  ALP+   RIE +D SH +G + V   VV GE G +K  YR+FN
Sbjct: 369 AQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGPIKKDYRRFN 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + V   DD   +R VL RR+ +L + E                 PDV+++DGG GQL
Sbjct: 429 I--SGVTPGDDYGALRQVLTRRYVRLKEGE--------------GILPDVLLIDGGMGQL 472

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             A  VL++L V   I + +IAKGP R AG+EK FV  + E + L   +   + IQ++RD
Sbjct: 473 RQAAEVLEELQVSGVI-LTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRD 531

Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT H  RR K+   S L EI GIGP R++ LL+ FG ++ + R+S E +A + G
Sbjct: 532 EAHRFAITAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPG 591

Query: 595 ISKKIACKIYNHFHKNTS 612
           +S+ +A  IY+  H++  
Sbjct: 592 VSETLAKAIYDACHQHKG 609


>gi|146292740|ref|YP_001183164.1| excinuclease ABC subunit C [Shewanella putrefaciens CN-32]
 gi|189038094|sp|A4Y5Y2|UVRC_SHEPC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|145564430|gb|ABP75365.1| Excinuclease ABC subunit C [Shewanella putrefaciens CN-32]
          Length = 609

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 197/611 (32%), Positives = 326/611 (53%), Gaps = 28/611 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D+ G V+YVGKA +L+KR+ SY   N    +   ++S I++I  T+T +E 
Sbjct: 16  SSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLDNVKTQALVSHIHHIDVTLTHSET 75

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           +ALLLE + IK+  P++N+LLRDDKS+PYIL++ +H+ P L  HR     +G YFGP+ +
Sbjct: 76  DALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-QHEHPRLAYHRGPQREKGHYFGPYPN 134

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV ++++ +Q+ F +R C D  ++ R+RPCL +Q+ RCS PC G++S+  Y E V  A
Sbjct: 135 GGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLA 194

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
             FL G +  +   +   M QA  +++YE A   RD++ AL  +    +   N   MD  
Sbjct: 195 SLFLKGKDQQVISTLVAKMEQAAQQQEYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVI 254

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPE 301
            +++   +AC    F   G+  G+ +++    +++   ++L  F+ QFY +    +  P+
Sbjct: 255 GVHYASGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPK 314

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +++S   EE   LE +       K  I    + ++   +  A+ NA  +   +LS + +
Sbjct: 315 EVVISHNFEELHELEAAVSIALNKKFSIKTNVRADRASFLRLAVTNATNAVITRLSHKNT 374

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +       +   L     R+E +D SH MG S+V   VV    G  K +YR++N+    
Sbjct: 375 VEQRFVLLEEILELSTPIHRMECFDISHTMGESSVASCVVFNREGPHKGEYRRYNIEG-- 432

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           +   DD A M+  + RRF ++    +                PD++ +DGG GQL  AQ 
Sbjct: 433 ITPGDDYAAMKQAITRRFDKIEAGGK---------------IPDILFIDGGLGQLRIAQK 477

Query: 482 VLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           ++ +  ++++    +I +AKG  R  G+E   +   E +  L    P L+ IQ +RDE+H
Sbjct: 478 IVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESH 537

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR RR+K    S L+ I GIGP R++ LLQ  G ++ +  +S   L  + GIS 
Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISI 597

Query: 598 KIACKIYNHFH 608
           ++A  I++   
Sbjct: 598 EMAQTIHDALR 608


>gi|161831046|ref|YP_001597046.1| excinuclease ABC subunit C [Coxiella burnetii RSA 331]
 gi|189038045|sp|A9NDQ6|UVRC_COXBR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|161762913|gb|ABX78555.1| excinuclease ABC, C subunit [Coxiella burnetii RSA 331]
          Length = 609

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/618 (35%), Positives = 338/618 (54%), Gaps = 26/618 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P   GVYQM D  G+V+YVGKA NLQKR+ SY      + +   M++Q+ +I+ T+
Sbjct: 10  LKTLPTGSGVYQMQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQSIQTTI 68

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T  E EALLLEA+ IK+ +PR+N+LLRDDKS+PY+ +    K P L  +R +    G YF
Sbjct: 69  TRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKAPGRYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  +V + +  +Q+ F LR C++S F++RTRPCL +QIKRC+ PC G ++ ++Y  
Sbjct: 129 GPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCVGYVNEQEYRR 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            V +A  F  G N  +  K+   M  A+    +E A  +RD++  L  +Q          
Sbjct: 189 QVEDAILFFEGKNDQVIIKLTERMEVASENLVFEEAAHYRDQIRQLRRLQKQQIITGGKG 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296
            +D   +  +         F   G+  G   FF  T   +T    L  F+ Q+Y     +
Sbjct: 249 NIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYYLSPLRN 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              PE I+ SE  E+   ++ +       K+ IT  K+   ++    A +NA ++ +Q L
Sbjct: 309 GDIPERIVTSEPLEDRLWIQRALSSGLNRKLAITDQKRAPYKQWQAMAALNAAQALSQHL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + + +  + L+   K  ALP+   RIE +D SH +G + V   VV GE G +K  YR+FN
Sbjct: 369 AQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGPIKKDYRRFN 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + V   DD   +R  L RR+ +L + E                 PDV+++DGG GQL
Sbjct: 429 I--SGVTPGDDYGALRQALTRRYVRLKEGE--------------GILPDVLLIDGGMGQL 472

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             A  VL++L V   I + +IAKGP R AG+EK FV  + E + L   +   + IQ++RD
Sbjct: 473 RQAAEVLEELQVSGVI-LTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRD 531

Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT H  RR K+   S L EI GIGP R++ LL+ FG ++ + R+S E +A + G
Sbjct: 532 EAHRFAITAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPG 591

Query: 595 ISKKIACKIYNHFHKNTS 612
           +S+ +A  IY+  H++  
Sbjct: 592 VSETLAKAIYDACHQHKG 609


>gi|238756487|ref|ZP_04617793.1| UvrABC system protein C [Yersinia ruckeri ATCC 29473]
 gi|238705303|gb|EEP97714.1| UvrABC system protein C [Yersinia ruckeri ATCC 29473]
          Length = 588

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 212/606 (34%), Positives = 326/606 (53%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  +  ++ +   ++  I  I  TVT TE EALLLE 
Sbjct: 1   MYDAKGTVIYVGKAKDLKKRLTSYFRTQVNSRKTETLVKNIAQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPLIFLS-ADTHPRLATHRGAKHEKGEYFGPFPNSYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S  +Y   V   + FLSG
Sbjct: 120 LALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVTGLVSEGEYQRQVDYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251
            +  +  ++   M +A+    +E A   RD++ A+  +        +    D   +    
Sbjct: 180 KDQQVLTQLISRMEKASHLLHFEEAARIRDQIQAVRRVTEKQFVSGSHEDLDVIGVAFES 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307
            LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPNGTELSEVVQTFVGQFYLQGSQSRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +LS + +    +K
Sbjct: 300 TLTEKDLLAESLSELAGRKIQIQSRPRGDRARYLKLARTNAATALVTRLSQQSTIHQRMK 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
              +   L     R+E +D SH MG   V   VV   NG VK++YR++N+    +   DD
Sbjct: 360 ALVQALKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVKSEYRRYNI--TGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL+RR+ + I  ++                PDV+ +DGGKGQL+ A  V  +LN
Sbjct: 417 YAAMAQVLKRRYGKAIDEQK---------------VPDVIFIDGGKGQLAQAIDVFAELN 461

Query: 488 V---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   + +  +I +AKG  R AG+E  FFV +GE + L    P L+ IQ +RDE+H  AIT
Sbjct: 462 VPWDKQKPLLIGVAKGSDRKAGLETLFFVAEGEGVSLPSDSPALHLIQHIRDESHNHAIT 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A +  IS+ +A K
Sbjct: 522 GHRQRRSKVKNTSALELIEGVGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581

Query: 603 IYNHFH 608
           IYN   
Sbjct: 582 IYNALK 587


>gi|57234009|ref|YP_181929.1| excinuclease ABC, C subunit [Dehalococcoides ethenogenes 195]
 gi|90111066|sp|Q3Z770|UVRC_DEHE1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|57224457|gb|AAW39514.1| excinuclease ABC, C subunit [Dehalococcoides ethenogenes 195]
          Length = 607

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 214/613 (34%), Positives = 330/613 (53%), Gaps = 27/613 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY M +  G ++YVGKA  L+ R+KSY    +    +   ++SQIN + + +T
Sbjct: 12  SLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPSRLEPKTRQLVSQINELEYLIT 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EAL+LE N+IKR +P FN+ L+DDK FPY+ IT   K P +Y  R  +   G YFG
Sbjct: 72  GSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYITRSMADDGGRYFG 131

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  +V  T+  L+  F  RSC  +    R+RPCL + I +C  PCTG+IS + Y   
Sbjct: 132 PFASTRSVRHTLQVLKELFRFRSCNRTEPEKRSRPCLEYDIHQCLSPCTGKISKQDYDHL 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYN 240
           + +A  FL G    + + +A+ MN+A+ + DYE+A + RD+++++  +         +  
Sbjct: 192 ISQAILFLEGKQDKVLKLLAKLMNEASARLDYETAALRRDQISSIKEVIEGQQLAARVSG 251

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299
             D  +     +L+ +Q  F   G+  G  +F L+   E     ILS F++QFY      
Sbjct: 252 EQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFSLQGTREEKPGDILSEFVKQFYHSSTQI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355
           P  I+      +  +LE    ++ G KV+IT   +G+ + +I     NA     ++  + 
Sbjct: 312 PPKIVTQYPLSDREILEKWLSERRGGKVQITAGLRGQPKDLINIVAENAREQLKQARIKN 371

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS+  +    L++      LP  P+RIE YD S+I G +AVG MVV       K  YR+F
Sbjct: 372 LSSAATLTDALEELQTALGLPLPPQRIEGYDISNIQGTNAVGSMVVFENGKPQKAHYRRF 431

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    VK  DD +M++ V+ RRF +L K+             SF   P ++++DGGKGQ
Sbjct: 432 RIKT--VKGADDFSMLKEVISRRFGRLNKD---------NAGESFARRPSLMLIDGGKGQ 480

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           LS+ +  L  L +E +  +I +AK  +     E +   K E + L    P L  +QR+RD
Sbjct: 481 LSSVKETLDTLGLEGQ-AVIGLAKEFE-----EIYLPGKSEPIRLMANSPALQLLQRVRD 534

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFA+  H   R K+   S LD I GIGP R+RLL+++FG+V  I ++S + L  ++G
Sbjct: 535 EAHRFALGYHLNIRHKSGLTSALDGIPGIGPSRRRLLIKTFGSVSGIRQASLDELLQVKG 594

Query: 595 ISKKIACKIYNHF 607
           I++ +A  I    
Sbjct: 595 INQALALSIKELL 607


>gi|296129791|ref|YP_003637041.1| excinuclease ABC, C subunit [Cellulomonas flavigena DSM 20109]
 gi|296021606|gb|ADG74842.1| excinuclease ABC, C subunit [Cellulomonas flavigena DSM 20109]
          Length = 670

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 194/633 (30%), Positives = 315/633 (49%), Gaps = 44/633 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+ PGVY+  D  GRV+YVGKA +L+ R+ SY     N   R   M++    +++TV 
Sbjct: 13  EIPDAPGVYRFRDEHGRVVYVGKAKSLRNRLNSYFQDLANLHPRTQQMVTTAAAVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   ++P +   R +      YFG
Sbjct: 73  GTEVEALALEYSWIKEFDPRFNVKYRDDKSYPYLAVTMADEVPRVQVMRGAKRRGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F +R+C+  VFR    + RPCLL  I +CS PC G I  E++
Sbjct: 133 PYAHAWAIRETVDLLLRVFPVRTCSAGVFRRARQQGRPCLLGYIDKCSAPCVGRIGIEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +   +   F++G       ++ R M  A  + DYE A   RD +  L      N  +  
Sbjct: 193 HQLAQDFCDFMAGDTGRFTRRLTRAMKDAAAEMDYERAARLRDDVRTLEKATERNAVVLS 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L  ++  A +Q      G+ RG   + ++   +  +A+++ + L+Q Y  +
Sbjct: 253 DGTDADVFALAGDELEAAVQVFHVRDGRIRGQRGWVVEKVEDLDDAELVEHLLQQVYGAE 312

Query: 298 PC-------PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
                    P  +L+     +   ++       G +V++ VP++G+KR++    L NA  
Sbjct: 313 DPEAATASVPREVLVPVLPPDVEQVQAWLTGLRGSRVQVRVPQRGDKRELAATVLRNAEH 372

Query: 351 SHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           +     +       S  M L++  +   LP  P RIE YD SH  G      MVV  +  
Sbjct: 373 ALALHRTRRAGDLTSRSMALREIQEALDLPSAPLRIECYDVSHNQGTYQSASMVVFEDGL 432

Query: 407 FVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEEN----------------- 448
             K++YR F +   + +  +DD A M  V+ RRF + +    +                 
Sbjct: 433 ARKSEYRLFTVRGPEGQGARDDTAAMHEVITRRFRRYLAERADSHDPELGDAEEDDAPRT 492

Query: 449 -LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
                   +   F   P++V++DGG  Q++AA   L +L +++ + +  +AK  +     
Sbjct: 493 GPVDERTGRPARFAYPPNLVVVDGGPPQVAAAAAALAELGIDD-VALCGLAKRLE----- 546

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPL 566
           E +   +   ++L      LY +QR+RDEAHRFAIT HRKRR K    S LD++ G+GP 
Sbjct: 547 EVWLPGEEYPVILRRASEGLYLLQRVRDEAHRFAITAHRKRRSKGMTASVLDDVPGLGPA 606

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           RK  LL+ FG+VK +  ++ E +A+I G+  + 
Sbjct: 607 RKAALLRHFGSVKRLRAATAEEIATIPGMGART 639


>gi|152970955|ref|YP_001336064.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150955804|gb|ABR77834.1| excinuclease ABC subunit C [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 588

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 205/606 (33%), Positives = 330/606 (54%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  SN  + +   +++ I  I  TVT TE EALLLE 
Sbjct: 1   MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIAQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + V   + FL+G
Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQVEYVRLFLAG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251
            +  +  ++   M +A+   ++E A   RD++ A+  +          + +D   +  + 
Sbjct: 180 KDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            +AC+   F   G+  G+ ++F K    +   +++  F+ QFY      +  P  ILL  
Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQMRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              + +LL  S  +  G ++ +    +G++ + ++ A  NA  + T KLS + +    L+
Sbjct: 300 NLGDKTLLADSLSELAGRRINVQTKPRGDRARYLKLARTNAATALTTKLSQQSTIHQRLQ 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
                  LP +  R+E +D SH MG   V   VV   NG ++ +YR++N+    +   DD
Sbjct: 360 ALASVLELPAVK-RMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRYNI--TGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL RR+ + I + +                PDV+++DGGKGQL+ A+ V  +L+
Sbjct: 417 YAAMNQVLRRRYGKAIDDNK---------------IPDVILIDGGKGQLAQAKAVFAELD 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   ++   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ +RDE+H  AI+
Sbjct: 462 VPWDKHHPLLLGVAKGSDRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIS 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRK+R K    S L+ I G+GP R+++LL+  G ++ + ++S E +A + GIS  +A K
Sbjct: 522 GHRKKRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQGLQQASVEEIAKVPGISHALAEK 581

Query: 603 IYNHFH 608
           I+    
Sbjct: 582 IFYSLK 587


>gi|50121805|ref|YP_050972.1| excinuclease ABC subunit C [Pectobacterium atrosepticum SCRI1043]
 gi|81644574|sp|Q6D363|UVRC_ERWCT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|49612331|emb|CAG75781.1| excinuclease ABC subunit C [Pectobacterium atrosepticum SCRI1043]
          Length = 610

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 210/618 (33%), Positives = 333/618 (53%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY  S+  + +   ++  I +I  T+
Sbjct: 11  LKTVTSQPGVYRMYDAGNTVIYVGKAKDLKKRLASYFRSHVASRKTEALVKSIKHIDVTI 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPMIFLS-GDAHPRLTVHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF + +AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E Y 
Sbjct: 130 GPFPNGNAVRETLILLQKLFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYR 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + V   + FLSG +  +  ++   M  A+    +E A   RD++ A+  +        + 
Sbjct: 190 QQVEYVRLFLSGKDQQVLNQLISRMESASRDLRFEDAARIRDQIQAVRRVTEKQFVSGDG 249

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
             +D  S+  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY    +
Sbjct: 250 EDLDVISVAFDAGMACVYVLFIRQGKVLGSRSYFPKVPGGTELGEVVQTFVGQFYLQGNS 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     +  LL  S     G KV+I    +G++ + ++ A  NA  +   K
Sbjct: 310 GRTLPTEILLDFTLPDKDLLTESLTAVAGRKVQIQTKPRGDRARYLKLARTNAATALVTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP    R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTIHQRLAALANVLQLP-EIHRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL+RR+ + + + +                PDV+++DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMAQVLQRRYGKALDDSK---------------IPDVIVIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531
           L  AQ V   L V   +N+  ++ +AKG  R AG+E  F++  GE + L    P L+ IQ
Sbjct: 472 LGQAQAVFDSLQVSWDKNKPLLLGVAKGSDRKAGLETLFLEATGEGMALPADSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AI  HRK+R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHDHAIGGHRKKRAKVKNTSTLELIEGVGPKRRQTLLKYMGGLQPLMNASIEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
           ++ GIS  +A KI++   
Sbjct: 592 NVPGISHGLAEKIFHALK 609


>gi|312897549|ref|ZP_07756969.1| excinuclease ABC subunit C [Megasphaera micronuciformis F0359]
 gi|310621401|gb|EFQ04941.1| excinuclease ABC subunit C [Megasphaera micronuciformis F0359]
          Length = 610

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 198/624 (31%), Positives = 305/624 (48%), Gaps = 37/624 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
             +++   PGVY   D  GR++YVGKA NL+ R+KSY+  +++   ++  M+S   ++  
Sbjct: 10  KIKELTTEPGVYLWKDEKGRIIYVGKAVNLRNRVKSYVRKDSNRAVKVAAMMSHAVDLET 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V   E EAL+LE  +IK+  PR+NI+LRDDK++PYI +T   + P ++  R        
Sbjct: 70  IVVANEAEALILENTLIKKHHPRYNIMLRDDKTYPYIKVTLNEEYPRVFMTRRVLRDGAR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPFA   AV + +  +Q    LR+C         RPCL + +  C  PC   IS   Y
Sbjct: 130 YFGPFADAGAVHRVLKLMQTALHLRTCRSMKVE---RPCLQYHLGHCEAPCVNYISKTAY 186

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +    A   L G N  L  ++   M  A   E +E A ++RD+LAAL  IQ   D +  
Sbjct: 187 QKQARLAVDALEGRNKTLYRELQDKMEAAATAEQFEKAAMYRDQLAALKIIQEQQDIVTT 246

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D    Y   +   +Q      G+  G   F L   ++ + A +    L Q+Y + 
Sbjct: 247 GAGDTDVIGFYAEGDKTAVQIYTIRGGKLMGRENFSLDNSNDESTAALTGAVLDQYYVEG 306

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT---- 353
                 ++  + E+    E     Q G  V I +P++G K++++E A  NA         
Sbjct: 307 VFIPREIVVPDVEDKEAYEHRLGVQKGRNVDIIIPRRGVKKRLLEMAENNAKVLWEQRRL 366

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           Q  + +      ++   K   LP +P R+E +D SH  G   V  MVV  +    K++YR
Sbjct: 367 QWRNDKNKTTGAVEALAKVLDLPCLPVRMECFDISHTQGIETVASMVVFEQGRPAKSEYR 426

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           +F L        DD   M  ++ERR+S                       PD++I+DGGK
Sbjct: 427 RFKLKTVQG-KPDDFKSMAEIMERRYS-----------------EKDWPVPDLIIIDGGK 468

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQL AA  V+++   +    +IS+AK  +     E F   + E+++L+   P L  +Q +
Sbjct: 469 GQLHAALPVIRRAGTDA--PVISLAKRIE-----EVFVEGRSESIILSHHTPELQLLQAI 521

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT HRK R K++  S LD I GIGP R++ + Q+F T+  I  +S + LA++
Sbjct: 522 RDEAHRFAITYHRKLRGKRSLVSVLDHIEGIGPKRRKAVWQAFKTLDDIKAASIDELAAV 581

Query: 593 EGISKKIACKIYNHFHKNTSHTPT 616
           +G+++  A  IY  F   T    T
Sbjct: 582 DGMNRSAAENIYYFFRLGTDEKRT 605


>gi|148825664|ref|YP_001290417.1| excinuclease ABC subunit C [Haemophilus influenzae PittEE]
 gi|189038059|sp|A5UB83|UVRC_HAEIE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|148715824|gb|ABQ98034.1| excinuclease ABC subunit C [Haemophilus influenzae PittEE]
          Length = 609

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 210/616 (34%), Positives = 335/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I   +T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE     Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSELEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K E  + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQEREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A  I+     +
Sbjct: 594 ISLKLAETIFETLKND 609


>gi|15893799|ref|NP_347148.1| excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824]
 gi|21363070|sp|Q97LP6|UVRC_CLOAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|15023370|gb|AAK78488.1|AE007565_7 Excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824]
 gi|325507922|gb|ADZ19558.1| excinuclease ABC subunit C [Clostridium acetobutylicum EA 2018]
          Length = 623

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 202/624 (32%), Positives = 335/624 (53%), Gaps = 19/624 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I+   +
Sbjct: 7   QLKNLPDKPGVYIMKNSLGEVIYVGKAKILKNRVRQYFRNSKNHSEKVKAMVKNISEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+ KPR+NILL+DDK +P+I +T     P +   R+       
Sbjct: 67  IVTDSEIEALILECNLIKKYKPRYNILLKDDKHYPFIKVTMNEDFPRIIVTRNMVKDGSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+  V AV +T++ ++R F +R+C   +  +    RPCL + IKRC+ PC G IS E
Sbjct: 127 YFGPYPDVSAVHETVDLMRRIFPIRTCKKYIKENGENIRPCLNYHIKRCNAPCAGLISKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y E + +A   +SG N+++  ++   M +A++  D+E A   RD++ A   +      I
Sbjct: 187 EYGEIIKKAVGLISGKNNDIIRELKEEMEKASMNLDFEKAADLRDKMLAAQKVTEKQKII 246

Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  SLY ++  +C+Q  F   G+  G   F ++  +      I+  F+++FY+
Sbjct: 247 IGNFENEDYISLYSDEKDSCVQVFFLREGKIVGREHFIVENTAGENEGDIIGEFIKEFYS 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   + +   E+ +LLE     + G KV+I +P++GEK+ IIE    N+  +  + 
Sbjct: 307 GTAYVPKSIYASAGEDLNLLENWLTMKRGSKVEIKIPQKGEKKDIIEMVKRNSKITLEKF 366

Query: 356 ----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
               LS +  ++ IL + T+   L  +P RIE YD S+I G  +VG M+V  E     + 
Sbjct: 367 KIKLLSDKRLNENILIEMTEVIGLEEVPHRIEAYDISNIQGVDSVGSMIVFEEGKPKNSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F +    VK  +D   MR +L RRF   ++     +N +       F  +PD++++D
Sbjct: 427 YRRFKIKT--VKGANDYDSMREILTRRFKHGLEEVNSIVNKNLSLSAGKFCVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VLK+ N++  I +  + K  + +       +     + +     I+ F+
Sbjct: 485 GGKGQVNIALEVLKEFNID--IPVCGMVKDDRHNTRG---IIYNNNEIDIKSNRKIINFV 539

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAIT HR  R K+  +S LD+I  IG  R++ LL+ FG+++ I +++ E L
Sbjct: 540 TRVQDEVHRFAITYHRSLRDKRVLHSVLDDIPYIGEKRRKALLKHFGSIENIKKATYEEL 599

Query: 590 ASIEGISKKIACKIYNHFHKNTSH 613
                I KK A  I ++F      
Sbjct: 600 MKTPSIDKKAAESIVSYFRGRKGE 623


>gi|297545157|ref|YP_003677459.1| excinuclease ABC subunit C [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842932|gb|ADH61448.1| excinuclease ABC, C subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 615

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 200/618 (32%), Positives = 328/618 (53%), Gaps = 18/618 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +PE PGVY M D  G ++YVGKA  L+ R++ Y     N   ++  M+S +++  +
Sbjct: 6   KLKLLPEKPGVYIMKDKKGEIIYVGKAIVLKNRVRQYFQNKENQLPKVKVMLSHVSDFEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ KPR+N+LL+DDK++PYI +T   + P +   R        
Sbjct: 66  IVTDTELEALMLECNLIKKYKPRYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP++S  AV +TI  +++ F +R+C  ++ +   + R CL + I  CS PCT +I+ E
Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNRNIEKDMRKVRACLYYHIGLCSAPCTNKINKE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V +A  FL G    L +K+  +M +A  +  +E A   RD++ A+         +
Sbjct: 186 DYRKLVDQAVLFLDGKRDWLVQKLKEDMQKAAEELRFEEAARIRDQIFAIESTSEKQKVV 245

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  S+     ++CIQ  F   G+  G   +++K        +I+S F++QFY 
Sbjct: 246 SVGEDEQDIISIARGAGISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352
             P  P+ I+   E +E  LL     ++ G KV IT+P +G+K+++++    NA  +  +
Sbjct: 306 GAPYIPKEIITDVELDERELLSEWLSQKRGNKVFITIPMRGKKKELVDMVYQNALEALKN 365

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              +  EIS    + + +    L +   RIE YD S+  G   VG MVV  +    K+QY
Sbjct: 366 DISIREEISKDQAVLELSNLVGLDYAR-RIEAYDISNTRGQDNVGAMVVFVDGKPKKSQY 424

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471
           RKFN+    V+ QDD   MR V+ERRF   I+ +E +     ++    F   PD++++DG
Sbjct: 425 RKFNVK--YVEGQDDYESMREVIERRFLHGIEEKELIEKGELEENKAKFAEMPDLILIDG 482

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G G ++A   VL  L +   I +  + K  K         V     + + M       I 
Sbjct: 483 GIGHVNAVLQVLYGLGIA--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTTKAFRLIA 537

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++++EAHRFAIT H++++ K   S L  I GIG  R + L  +F +++ I R+S E L  
Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGEKRAKALYDAFNSIEEIKRASVEDLKK 597

Query: 592 IEGISKKIACKIYNHFHK 609
           ++G+++K A  +Y +F K
Sbjct: 598 VKGMNEKAAQAVYEYFRK 615


>gi|145635242|ref|ZP_01790946.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA]
 gi|145267521|gb|EDK07521.1| excinuclease ABC subunit C [Haemophilus influenzae PittAA]
          Length = 609

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 210/616 (34%), Positives = 337/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I  T+T +E 
Sbjct: 13  HESGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
           V AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 VGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE     Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSELEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNKEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A +I+     +
Sbjct: 594 ISPKLAERIFETLKND 609


>gi|238784688|ref|ZP_04628692.1| UvrABC system protein C [Yersinia bercovieri ATCC 43970]
 gi|238714367|gb|EEQ06375.1| UvrABC system protein C [Yersinia bercovieri ATCC 43970]
          Length = 588

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 214/606 (35%), Positives = 330/606 (54%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D AG V+YVGKA +L+KR+ SY  +   + +   ++  I  I  TVT TE EALLLE 
Sbjct: 1   MYDKAGTVIYVGKAKDLKKRLTSYFRAQVASRKTETLVKNIAQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPLIFLS-ADTHPRLAIHRGAKHEKGEYFGPFPNSYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y   V   + FLSG
Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVTGLVSDEEYQRQVDYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251
            +  +  ++   M +A+    +E A   RD++ A+  +        +    D   +  + 
Sbjct: 180 KDQQVLTQLISRMEEASKSLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307
            LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
             EE  LL  S  +  G K++I    +G++ + ++ A  NA  + T +LS + +    +K
Sbjct: 300 TLEEKELLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALTTRLSQQSTIHQRMK 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           +  K   L     R+E +D SH MG   V   VV   NG V+++YR++N+  + +   DD
Sbjct: 360 ELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL+RR+ + +  ++                PDV+ +DGGKGQLS A  V   LN
Sbjct: 417 YAAMSQVLKRRYGKALDEKK---------------IPDVIFIDGGKGQLSQAFDVFASLN 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ +RD++H  AIT
Sbjct: 462 VPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR+RR K    S L+ I GIGP R+++LL+  G ++ +  +S E +A +  IS+ +A K
Sbjct: 522 GHRQRRSKVKNTSALEMIEGIGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581

Query: 603 IYNHFH 608
           IYN   
Sbjct: 582 IYNALK 587


>gi|221632453|ref|YP_002521674.1| excinuclease ABC subunit C [Thermomicrobium roseum DSM 5159]
 gi|221155909|gb|ACM05036.1| excinuclease ABC, C subunit [Thermomicrobium roseum DSM 5159]
          Length = 625

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 200/619 (32%), Positives = 326/619 (52%), Gaps = 33/619 (5%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEV 67
            PGVY M D  GRV+YVGKA +L++R++SY  S ++   +   ++SQI +     T T  
Sbjct: 27  APGVYLMKDAQGRVIYVGKASSLRQRLRSYFSSHSSMDAKTRELVSQIADFEVIRTDTPT 86

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL+LE  +IKR +PRFNI+LRDDK++P+I IT+    P +   R        YFGP+ S
Sbjct: 87  EALILENELIKRYRPRFNIMLRDDKTYPFIRITN-EPFPRVIATRRIVRDGSRYFGPYPS 145

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV +T++ L+R F  R+C   +    +R CL + I RC+GPC G +S E+Y   +   
Sbjct: 146 AGAVHRTLDLLKRLFPYRACDIEITGTASRACLYYHIGRCAGPCIGAVSQEEYRGIIDNV 205

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
             FL G    +  ++   M +A  + ++E A   RD L A+ H+      +    + F +
Sbjct: 206 VLFLEGRAEAVVARLQAAMEEAAERLEFERAARIRDELRAIQHVLQQQKIVTGTDESFDV 265

Query: 248 ----YHNKNLACIQTCFFHFGQNRGTCTFFLKTD-SESTNAQILSYFLRQFYTDKP-CPE 301
                     AC+Q  F   G+  G+  + +     +     IL+ F++Q+Y      P 
Sbjct: 266 LAVAQSAGGDACVQIGFVRNGKLLGSEHYLMVGARIDDPPGAILTSFVQQYYAQASTVPP 325

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI----NAHRSHTQKLS 357
            ++L    ++   +      +    V++TVP  G +R+++E        N  +   + L+
Sbjct: 326 ELVLQHPLDDGETIAAWLAARRDGPVRLTVPDDGFRRELVEMIAKSAVQNLEQHRVRWLN 385

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            E    + L++      +  +P+RIE +D S + G + V  MVV       K+ YRKF +
Sbjct: 386 DEQRTTLALEELADALGMDRLPRRIECFDVSQLQGTNVVASMVVFEHGKPKKSDYRKFQI 445

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V+ QDD A +R  + RR+ + +  E+           ++ + PD+V++DGGKGQLS
Sbjct: 446 KT--VEGQDDYAALREAVLRRYRRALSAEQ---------TEAWQALPDLVLIDGGKGQLS 494

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+  L +L ++  + I ++AK  +     E +   + E +VL      L+ +QR+RDEA
Sbjct: 495 AAREALVELGLD--LPIAALAKEHE-----ELYIPDQSEPIVLPRDSQALFLVQRVRDEA 547

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA+T HR RR ++   S LDEI GIGP R+R LL+ FG+V+ I ++S E +A++ GIS
Sbjct: 548 HRFAVTFHRARRTRSTIRSLLDEIPGIGPRRRRELLRRFGSVEGIRQASIEEIAAVPGIS 607

Query: 597 KKIACKIYNHFHKNTSHTP 615
           + +A +I      + +  P
Sbjct: 608 RALAERIKKEL--DEARAP 624


>gi|260903778|ref|ZP_05912100.1| excinuclease ABC subunit C [Brevibacterium linens BL2]
          Length = 619

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 198/620 (31%), Positives = 311/620 (50%), Gaps = 28/620 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
            +P   GVY+  D   RV+YVGKA NL+ R+ SY  +      R + M+    ++ +TV 
Sbjct: 13  SIPTSAGVYKFRDPDRRVIYVGKAKNLRNRLNSYFSNPAQLHPRTSTMVHTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   I    PRFN++ RDDKS+PY+ IT   ++P  +  R        YFG
Sbjct: 73  DTEVEALQLEWTWINEFNPRFNVMFRDDKSYPYLAITMNDEVPRAFITRGKRRKGVKYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PFA V A++ T++ L R F +R+C   V+R      RPCLL  I +C+ PC G+IS E +
Sbjct: 133 PFAQVWAIKDTLDLLLRAFPMRTCTAGVYRRAERSGRPCLLGYIDKCAAPCVGQISVEGH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            +       F+SG          + M  A  + DYE A   RD + AL  + + +  + +
Sbjct: 193 KDLARSISDFMSGNTGRFISYRQKEMASAAEELDYERAARLRDEITALQKVLDKSAVVLS 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
                D F+L   +  A +Q      G+ RG   + ++   + + A++ + +LRQ YT  
Sbjct: 253 VNADCDVFALVTEELEASVQVFHVRQGRIRGQRGWIIERSDDHSPAELTTDYLRQAYTGL 312

Query: 297 --KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  IL+     +   LE    +Q G +V + VP++GEK+ ++E    NA  +  Q
Sbjct: 313 DADAIPREILVDTVPADIESLESWLSEQRGSRVTVRVPERGEKKAVLETVAKNAKEALLQ 372

Query: 355 KLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                     +    LK+  +  +LP  P RIE  D SH  G + V  +VV  +    K 
Sbjct: 373 HKLKRSSDLTTRSTALKEIQEYLSLPEAPLRIECIDISHTQGSNVVASLVVFEDGLVKKR 432

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR F +H       DD A M  V+ RRFS+ ++          + +  F   P ++++D
Sbjct: 433 DYRHFAIHGE--AATDDTASMYDVVSRRFSRYLEQ-----MSSDEPDERFGYRPSLLVVD 485

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           G   Q++AA   L  L + + I+++ +AK  +     E +  +    ++L      L+ +
Sbjct: 486 GAGPQVAAATRALHDLGIVD-ISVVGLAKRLE-----EVWVPEDPFPVILPRNSEGLFLM 539

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QRLRDEAHRFAI+ HR +R KA  S  LD+I+G+G  ++  LL+ FG+VK +  +S E L
Sbjct: 540 QRLRDEAHRFAISYHRSKRAKAMTSSVLDDISGLGESKRTALLRHFGSVKKVRAASIEEL 599

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI + +A K+     +
Sbjct: 600 CEVKGIGQALAEKVAAALAE 619


>gi|182624542|ref|ZP_02952325.1| excinuclease ABC, C subunit [Clostridium perfringens D str.
           JGS1721]
 gi|177910350|gb|EDT72731.1| excinuclease ABC, C subunit [Clostridium perfringens D str.
           JGS1721]
          Length = 620

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 197/619 (31%), Positives = 318/619 (51%), Gaps = 20/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+  PR+NI L+DDK +P+I IT     P +Y  R+ +     
Sbjct: 67  IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV + +  +++ F LR+C  ++      TR CL + I  C  PC G IS  
Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y E + E    L+G + ++ +K+   M +A  + ++E A   RDR+ A+  I       
Sbjct: 187 EYWEMIDEIINILNGTDTSIIKKLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D   LY ++   C Q  F   G+  G   F ++  S+    +++S F+  FY 
Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENISDDPVKEVISSFIASFYG 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
                P+ I + EE E+  L+E    ++ G KV I VPK G+K+ +++    NA     +
Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKNGDKKNLLDMVRNNAKIMLDQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              + +  +  ++  L +      L  +P RIE YD S+I G  +VG MVV        +
Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPARIEAYDISNIQGVDSVGTMVVFENGKAKNS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YR+F +    VK  +D   MR +L RRFS  ++   +    + +  +  F  +PD++++
Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ A  VLK   +E  I +  + K  K       F     E +++     ++  
Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDDKHRTRGIIF---NNEEILIRRGSGLMNL 539

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DE HR+AIT HR  R K+  +S L++I  IG  R+R LL  FG++  I ++S E 
Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599

Query: 589 LASIEGISKKIACKIYNHF 607
           L    GI K+ A  I  +F
Sbjct: 600 LLDTPGIDKRAAESIKQYF 618


>gi|33152820|ref|NP_874173.1| excinuclease ABC subunit C [Haemophilus ducreyi 35000HP]
 gi|71153396|sp|Q7VKR0|UVRC_HAEDU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|33149045|gb|AAP96562.1| excinuclease ABC, subunit C [Haemophilus ducreyi 35000HP]
          Length = 612

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 204/620 (32%), Positives = 333/620 (53%), Gaps = 33/620 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    ++YVGKA +L+KR+ SY  S   + +I  ++  I++I  T+T 
Sbjct: 12  DVPHLPGVYRMYDANQAIIYVGKAKDLKKRLASYFRSQVASKKIEALVGNIHHIDTTITH 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK+ +P++N+LLRDDKS+PY+L+T KH+ P L   R S  + G YFGP
Sbjct: 72  SETEALLLEHNYIKQHQPKYNVLLRDDKSYPYLLLT-KHQHPRLTAFRGSKKVAGEYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +V AV +++N LQ+ F +R C D+ +++R+RPCL  QI RC  PC     S ++Y   
Sbjct: 131 YPNVSAVRESLNLLQKIFPIRQCEDNYYKNRSRPCLQHQIGRCLAPCVTGYCSQQEYDNQ 190

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V   + FL G +  + + + + M  A  + D+E+A   RD++ ++  +Q          +
Sbjct: 191 VKWVRLFLQGKDSQVIDYLMQKMEIAASELDFETAARFRDQIQSVRAVQEKQFVANQRLD 250

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   LAC    F   G+  G   +F K  S +   ++   F+ QFY      
Sbjct: 251 DLDIISIAYQSGLACAHILFIRQGKVLGNRAYFPKVPSHTDLTELADTFIGQFYLQLNQH 310

Query: 297 KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I+L +   E  +L ++   +       IT   +G+K + +  A  NA  + + +
Sbjct: 311 RSIPNQIILDQPLTESNALAQLLTEQAGHKVTIITNHVRGDKSRYLALAQTNARAALSLQ 370

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L    +             LP I  R+E +D SH MG   V   VV  ENG +K+ YR+F
Sbjct: 371 LKQSTTIHKRYDALKILLKLPTIK-RMECFDISHTMGSQTVASCVVFDENGPLKSDYRRF 429

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   L +R+ + +  E+                PD++ +DGGKGQ
Sbjct: 430 NIEG--ITGGDDYAGMEQALVKRYDKPLPIEK---------------IPDIIFIDGGKGQ 472

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
           L+ A  V +KL V   +++  +I +AKG +R AG+E   + +  + + L +  P L+ IQ
Sbjct: 473 LNRALQVFEKLTVAWDKHKPLLIGVAKGAERKAGLETLIIGRLKKEIHLPIDSPALHLIQ 532

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++   + 
Sbjct: 533 HIRDESHHHAISGHRKKRQKAFVESGLESIAGVGAKRRQALLKYLGGMQGVKSATLAEIE 592

Query: 591 SIEGISKKIACKIYNHFHKN 610
           S+ GISK +A  I++  H +
Sbjct: 593 SVPGISKTLAGVIFDTLHNS 612


>gi|326622889|gb|EGE29234.1| excinuclease ABC, C subunit [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 588

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 208/602 (34%), Positives = 329/602 (54%), Gaps = 31/602 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TVT TE EALLLE 
Sbjct: 1   MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + V   + FLSG
Sbjct: 120 LALLQKIFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQVEYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251
            +  +  ++   M +A+    +E A   RD++ A+  +          + +D   +  + 
Sbjct: 180 KDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAGDDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            +AC+   F   G+  G+ ++F K    +   +++  F+ QFY      +  P  ILL  
Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQMRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   KLS + +    L 
Sbjct: 300 NLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITKLSQQSTITQRLT 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
                  LP I  R+E +D SH MG   V   VV   NG ++ +YR++N+    +   DD
Sbjct: 360 ALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--AGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL RR+ + I+  +                PDV+++DGGKGQL+ A+ V  +L+
Sbjct: 417 YAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQLAQAKAVFAELD 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 VPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A K
Sbjct: 522 GHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEK 581

Query: 603 IY 604
           I+
Sbjct: 582 IF 583


>gi|168216567|ref|ZP_02642192.1| excinuclease ABC, C subunit [Clostridium perfringens NCTC 8239]
 gi|182381551|gb|EDT79030.1| excinuclease ABC, C subunit [Clostridium perfringens NCTC 8239]
          Length = 620

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 195/619 (31%), Positives = 318/619 (51%), Gaps = 20/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+  PR+NI L+DDK +P+I IT     P +Y  R+ +     
Sbjct: 67  IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV + +  +++ F LR+C  ++      TR CL + I  C  PC G IS +
Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKD 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y E + E    L+G + ++ + +   M +A  + ++E A   RDR+ A+  I       
Sbjct: 187 EYWEMIDEIINILNGTDTSIIKNLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D   LY ++   C Q  F   G+  G   F ++   +    +++S F+  FY 
Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENIGDDPVEEVISSFIASFYG 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
                P+ I + EE E+  L+E    ++ G KV I VPK+G+K+ +++    NA     +
Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              + +  +  ++  L +      L  +P RIE YD S+I G  +VG MVV        +
Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPARIEAYDISNIQGVDSVGTMVVFENGKAKNS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YR+F +    VK  +D   MR +L RRFS  ++   +    + +  +  F  +PD++++
Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEINKIKERNLEYSKGKFCIFPDLIMM 484

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ A  VLK   +E  I +  + K  K       F     E +++     ++  
Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDDKHRTRGIIF---NNEEILIRRGSGLMNL 539

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DE HR+AIT HR  R K+  +S L++I  IG  R+R LL  FG++  I ++S E 
Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599

Query: 589 LASIEGISKKIACKIYNHF 607
           L    GI K+ A  I  +F
Sbjct: 600 LLDTPGIDKRAAESIKQYF 618


>gi|331002139|ref|ZP_08325658.1| UvrABC system protein C [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411233|gb|EGG90649.1| UvrABC system protein C [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 611

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 201/618 (32%), Positives = 314/618 (50%), Gaps = 30/618 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ + + +I  M+S+I    +
Sbjct: 8   ELKKLPGQPGVYIMHDKKDEIIYVGKAISLKNRVRQYFQSSKDKSPKIKQMVSKIERFEY 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +PR+N +LRDDK++PYI +T K + P L   R     +  
Sbjct: 68  IVTDSELEALVLENNLIKENRPRYNTMLRDDKTYPYIKLTVKEEYPRLQMVRQIKKDKNR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGPF+S +AV  TIN L R + LR+C+ ++ +     RPCL + I +C  PC   IS E
Sbjct: 128 YFGPFSSGNAVRDTINLLNRVYKLRTCSRNLPKDIGAERPCLDYFIHQCDAPCQNYISKE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V EA KFLSG    +  KI   M + + +  +E A   RD L ++ HI       
Sbjct: 188 DYNKNVVEALKFLSGDFDPIINKIREEMERLSSELKFEDAAKQRDLLNSVLHITQKQKIT 247

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            +     D  ++  ++  A +Q  F   G+  G    +++   +     IL  F++QFY 
Sbjct: 248 SDDIKDRDIIAMARDERDAVVQVFFIREGKMVGREHHYIQVAMDDEKVDILESFIKQFYA 307

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  I+   E ++  L+      + G KV I VPK+G K K++E A  NA      
Sbjct: 308 GTPFVPSQIMSQYELKDNKLITEWLSSKRGSKVNIIVPKKGSKEKLVELAKKNAEIVLTK 367

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+  +  +L  +  R+E YD S+I G  +VG MVV       K+
Sbjct: 368 DREKLQRQEARSVGAVKEIEELLSLSGLS-RMEAYDISNISGVQSVGSMVVYENGIPKKS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V   +D A M+ VL RRF   I   +            F   PD++++D
Sbjct: 427 DYRKFKIKT--VIGPNDYASMKEVLTRRFENGIDKND----------TGFNKLPDIILMD 474

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG+GQ++    VL++  +   I +  + K                  + ++        I
Sbjct: 475 GGRGQVNICLQVLEEFGL--NIPVCGMVKDDNHRTRG---LYYNNVEIPIDTHSQGFLLI 529

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR  R K    S LD+I GIG +R++ L++ F  ++ I  +SP+ L
Sbjct: 530 TRIQDEAHRFAIEYHRSLRSKTQVKSILDDIEGIGTVRRKALMKHFKDIENIKNASPDEL 589

Query: 590 ASIEGISKKIACKIYNHF 607
            S++G++KK A  +Y  F
Sbjct: 590 MSVDGMNKKSAKAVYEFF 607


>gi|16272031|ref|NP_438230.1| excinuclease ABC subunit C [Haemophilus influenzae Rd KW20]
 gi|260580639|ref|ZP_05848466.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW]
 gi|1174920|sp|P44489|UVRC_HAEIN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|1573005|gb|AAC21735.1| excinuclease ABC, subunit C (uvrC) [Haemophilus influenzae Rd KW20]
 gi|260092701|gb|EEW76637.1| excinuclease ABC, C subunit [Haemophilus influenzae RdAW]
          Length = 609

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 210/616 (34%), Positives = 338/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I  T+T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K +   +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHQRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE    +Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCDLLNLPKIK-RMECFDISHTMGNQTVASCVVFNKEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M  VL++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQVLQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A +I+     +
Sbjct: 594 ISPKLAERIFETLKND 609


>gi|319775000|ref|YP_004137488.1| UvrABC system protein C [Haemophilus influenzae F3047]
 gi|329123098|ref|ZP_08251668.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116]
 gi|317449591|emb|CBY85796.1| UvrABC system protein C [Haemophilus influenzae F3047]
 gi|327471653|gb|EGF17095.1| excinuclease ABC subunit C [Haemophilus aegyptius ATCC 11116]
          Length = 609

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/616 (33%), Positives = 336/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I   +T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE     Q G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSELEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A +I+     +
Sbjct: 594 ISLKLAERIFETLKND 609


>gi|289578945|ref|YP_003477572.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9]
 gi|289528658|gb|ADD03010.1| excinuclease ABC, C subunit [Thermoanaerobacter italicus Ab9]
          Length = 615

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 202/618 (32%), Positives = 329/618 (53%), Gaps = 18/618 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +PE PGVY M D  G ++YVGKA  L+ R++ Y     N   ++  M+S +++  +
Sbjct: 6   KLKLLPEKPGVYIMKDKKGEIIYVGKAIVLKNRVRQYFQNKENQLPKVKVMLSHVSDFEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ KPR+N+LL+DDK++PYI +T   + P +   R        
Sbjct: 66  IVTDTELEALMLECNLIKKYKPRYNVLLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP++S  AV +TI  +++ F +R+C  ++ +   + R CL + I  CS PCT +I+ E
Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNRNIEKDMRKVRECLYYHIGLCSAPCTNKINKE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V +A  FL G    L +K+  +M +A  +  +E A   RD++ A+         +
Sbjct: 186 DYRKLVDQAVLFLDGKRDWLVQKLKEDMQKAAEELRFEEAARIRDQIFAIESTSEKQKVV 245

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  S+     ++CIQ  F   G+  G   +++K        +I+S F++QFY 
Sbjct: 246 SVGEDEQDIISIARGAGISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352
             P  P+ I+   E +E  LL     ++ G KV IT+P +G+K+++++    NA  +  +
Sbjct: 306 GAPYIPKEIITDVELDERELLSEWLSQKRGNKVFITIPMRGKKKELVDMVYQNALEALKN 365

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              +  EIS    + + +K   L +   RIE YD S+  G   VG MVV  +    K+QY
Sbjct: 366 DISIREEISKDQAVLELSKLVGLDYAR-RIEAYDISNTRGQDNVGAMVVFVDGKPKKSQY 424

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471
           RKFN+    V+ QDD   MR V+ERRF   I+ +E +     ++    F   PD++++DG
Sbjct: 425 RKFNVK--YVEGQDDYESMREVIERRFLHGIEEKELIEKGELEENKAKFAEMPDLILIDG 482

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G G ++A   VL  L +   I +  + K  K         V     + + M       I 
Sbjct: 483 GIGHVNAVLQVLYGLGIA--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTTKAFRLIA 537

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++++EAHRFAIT H++++ K   S L  I GIG  R + L  +F +++ I R+S E L  
Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGEKRAKALYDAFNSIEEIKRASVEDLKK 597

Query: 592 IEGISKKIACKIYNHFHK 609
           +EG+++K A  +Y +F K
Sbjct: 598 VEGMNEKAAQAVYEYFRK 615


>gi|114563814|ref|YP_751327.1| excinuclease ABC subunit C [Shewanella frigidimarina NCIMB 400]
 gi|119367834|sp|Q07ZS6|UVRC_SHEFN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|114335107|gb|ABI72489.1| Excinuclease ABC subunit C [Shewanella frigidimarina NCIMB 400]
          Length = 610

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 200/616 (32%), Positives = 328/616 (53%), Gaps = 28/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D   +V+YVGKA +L+KR+ SY   N    +   ++S I++I  TV
Sbjct: 11  LKNVTSAPGVYRMYDKHQQVIYVGKAKDLKKRLSSYFRVNIANVKTQALVSHIDHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E +ALLLE + IK+  P++N+LLRDDKS+PYIL++  HK P L  HR     +G YF
Sbjct: 71  THSETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLS-GHKHPRLAYHRGPKREKGHYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  AV ++++ +Q+ F +R C D  ++ R+RPCL +Q+ RCS PC G +S ++Y E
Sbjct: 130 GPYPNGGAVRESLHLIQKLFPIRQCDDLYYKSRSRPCLQYQLDRCSAPCVGIVSDDEYSE 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V  A  FL G +  +  ++   M  A +  +YE A  +RD++ AL  +    +   +  
Sbjct: 190 QVKLAGLFLRGKDKQVISQLVAKMETAAIDMEYERAAQYRDQITALRRVAEQQEVSNHKG 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD---- 296
            MD   + +   +AC    F   G+  G+ +++    +E+   ++LS FL QFY +    
Sbjct: 250 DMDVIGVDYASGIACFHLLFIRDGKIFGSRSYYPSVPAETEIEEVLSSFLGQFYLNADIQ 309

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P+ ++LS   +  + L+ S       K ++    +G++   +  A+ NA  +   KL
Sbjct: 310 RTIPKEVILSHHFDGITELQASIEHALDKKFELKTQVRGDRANFLRLAMTNASNAVATKL 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +   +   +   L    KR+E +D SH MG S V   VV    G  K  YR++N
Sbjct: 370 SHKNTVEQRFQLLEEALELNEPIKRMECFDISHTMGESTVASCVVFNREGPHKADYRRYN 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M   + RRF ++  N +                PD+V +DGG GQL
Sbjct: 430 I--TGITGGDDYAAMEQAISRRFDKIDNNGK---------------VPDLVFIDGGIGQL 472

Query: 477 SAAQGVLKK--LNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRL 533
             AQ ++ +  +N+++   +I + KG  R AG+E F V   E    +    P  + +  +
Sbjct: 473 RVAQTIVDEKCVNIDHPPLLICVTKGEGRKAGLETFTVGGSEQTFEVASDSPAFHLMLHI 532

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR +R+K    S L+ I G+GP R++ LLQ  G ++ +  +S   L  +
Sbjct: 533 RDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQHLGGIQEVKGASVAELTKV 592

Query: 593 EGISKKIACKIYNHFH 608
            GIS ++A  I++   
Sbjct: 593 PGISLEMAQTIHDALR 608


>gi|313895929|ref|ZP_07829483.1| excinuclease ABC, C subunit [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975354|gb|EFR40815.1| excinuclease ABC, C subunit [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 608

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 189/618 (30%), Positives = 309/618 (50%), Gaps = 38/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M D  G+++YVGKA  L+ R++ Y  S+ N   ++  M+S + +   
Sbjct: 8   KLKLLPDTPGVYIMKDERGKIIYVGKAIVLKNRVRQYFQSSRNQAPKVRAMVSHVADFET 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T  EVE+L+LEAN+IK+ +PR+NI L+DDKS+PY+ +T +   P ++  R        
Sbjct: 68  IMTANEVESLILEANLIKKHRPRYNIRLKDDKSYPYVKVTMQEDFPRVFITRRVLRDGAR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ +V A+  ++  L+R F LR+C     +   RPCL + IKRC  PC  +++ E Y
Sbjct: 128 YFGPYTNVTALRDSLKLLKRLFPLRTCR----KMPERPCLEYHIKRCLAPCVDKVTKEDY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              +     FL G   +++ ++ + M  A     +E+A   RD+L ++       + +  
Sbjct: 184 AAMIRAVLLFLEGRTDDVERELEQRMQLAAEAYHFETAARLRDQLVSVRKAAERQNIVTG 243

Query: 241 RMDCFS--LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             D  +  +       C+Q  F   G+  G   F L+   E  +  +L  FL Q+Y    
Sbjct: 244 AGDQDAVGMARAGAGVCVQIFFIRGGKMIGREHFLLRGSDEERDEDVLRAFLEQYYNAAT 303

Query: 299 -CPENILLSEEA---EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  +LL  +    E   +      K+ G +V +  P++G KR I+  A  NA      
Sbjct: 304 FVPREVLLPLDIGAAERAVIERWLADKKGGGRVALLTPQRGTKRDIVVMATGNARKFLAD 363

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             T++   +  +   +++  +   L   P R+E +D SH  G   V  MVV       K+
Sbjct: 364 EETRRALADEQNMGAVEELGRYLGLKKAPYRMECFDISHNQGQETVASMVVFEGGMPKKS 423

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR+F +   +    DD   MR V  RR+  L   E                 PD++I+D
Sbjct: 424 DYRRFKIRSAEG-KPDDFLSMREVTTRRYVGLPAEE----------------LPDLIIID 466

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLS+A  +++     + + ++ +AK  +       F   + E + L  R   LY +
Sbjct: 467 GGKGQLSSALEIIRGAAGHSAVPVVGLAKQFEL-----IFVEGESEPVELPRRSDALYLV 521

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDEAHRFAIT HR  R K+   S LD I G+GP R++ L + FGT++ +  +S + L
Sbjct: 522 QRIRDEAHRFAITYHRNLRGKRNLVSVLDHIVGVGPKRRQALREHFGTIEKMKAASVDEL 581

Query: 590 ASIEGISKKIACKIYNHF 607
            S+ G+++  A  +Y+ F
Sbjct: 582 VSVRGMNRPAAEAVYHFF 599


>gi|229820663|ref|YP_002882189.1| excinuclease ABC, C subunit [Beutenbergia cavernae DSM 12333]
 gi|259710335|sp|C5BV40|UVRC_BEUC1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229566576|gb|ACQ80427.1| excinuclease ABC, C subunit [Beutenbergia cavernae DSM 12333]
          Length = 693

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 194/658 (29%), Positives = 318/658 (48%), Gaps = 52/658 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+ PGVY+  D  GRV+YVGKA +L+ R+ SY    +    R   M++  +++ +TV 
Sbjct: 13  EIPDAPGVYRFRDPHGRVVYVGKAKSLRSRLSSYFQDLSALHPRTQQMVTTASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   ++P +   R +      YFG
Sbjct: 73  GTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTMGEEVPRVQVMRGAKRKGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T++ L R F +R+C+  V++      RPCLL  I +CS PC G IS E +
Sbjct: 133 PYGHAWAIRETVDLLLRVFPVRTCSSGVYKRAAASGRPCLLGYIDKCSAPCVGRISVEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +   +   F++G +     ++   M  A+ + D+E A   RD + AL  +   N  +  
Sbjct: 193 RDLAEDFCSFMAGESGVFLRRLESEMAAASAELDFERAARVRDDINALRRVVEKNAVVLA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L  ++    +Q      G+ RG   +  +   +  +  ++   L+Q Y   
Sbjct: 253 DGTDADVFALAADELEVSVQVFHVRGGRVRGQRGWVTERVEDLDDGALVERLLQQVYGPY 312

Query: 298 P-----------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
                        P  +L+    ++   L        G +V + +P++GEKR + E    
Sbjct: 313 ATEKGPDGGATGVPREVLVPALPDDAVELAEWLSTLRGSRVSLRIPQRGEKRALAETVRT 372

Query: 347 NAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402
           NA ++     +       S    L +  ++  L   P RIE YD S + G   VG MVV 
Sbjct: 373 NAQQALALHKTRRAGDLTSRSRALSELQEELGLAESPLRIECYDISTLQGTHQVGSMVVF 432

Query: 403 GENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEE-------------- 447
            +    K++YR+F +   D +  +DD   M  V+ RRF + +   +              
Sbjct: 433 EDGLARKSEYRQFVVRGADGQGARDDTEAMHEVITRRFRRYLAQRDVGVAGGGSGEVPAE 492

Query: 448 --------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499
                           +   F   P++V++DGG  Q++AAQ  L +L V + + ++ +AK
Sbjct: 493 DDDGVAIAGPVDPETGRPARFAYPPNLVVVDGGPPQVAAAQRALDELGVSD-VALVGLAK 551

Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLD 558
             +     E +   +   LVL      LY +QR+RDEAHRFAIT HRKRR K    S LD
Sbjct: 552 RLE-----EVWLPGEEYPLVLPRASEGLYLLQRVRDEAHRFAITHHRKRRGKSMTRSTLD 606

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           ++ G+GP R+  LLQ+FG+V+ I  ++PE +A++ G  ++ A ++      +     T
Sbjct: 607 DVPGLGPSRQAALLQAFGSVRRIRAATPEEIAAVPGFGRRTAEQVLAALAPSPDDATT 664


>gi|260587221|ref|ZP_05853134.1| excinuclease ABC subunit C [Blautia hansenii DSM 20583]
 gi|331083542|ref|ZP_08332653.1| UvrABC system protein C [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260542416|gb|EEX22985.1| excinuclease ABC subunit C [Blautia hansenii DSM 20583]
 gi|330403753|gb|EGG83305.1| UvrABC system protein C [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 620

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 199/622 (31%), Positives = 322/622 (51%), Gaps = 20/622 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y   + +   +   M+ QI    +
Sbjct: 7   ELKKLPSLPGVYIMHDEQDAIIYVGKAISLKNRVRQYFQKSRNLGIKKEQMVEQIARFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE+N+IK   P++N +L+DDK++P+I +T     P +   R     +  
Sbjct: 67  IVTDSELEALVLESNLIKEHCPKYNTMLKDDKNYPFIKVTAGEAFPRIMTARSMKKDKSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+  I   ++ + LR+C  ++ R   + RPCL + IK+C  PC G I+  
Sbjct: 127 YFGPYTSAGAVKDVIELTRKLYHLRTCNRNLPRDIGKERPCLYYHIKQCDAPCQGYITEA 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V E   FL+G +  +  ++   M +A+ K ++E A  +RD + ++  I       
Sbjct: 187 AYQKQVEELLDFLNGNHKKILTQLEGKMYEASEKMEFEDAAQYRDLIQSVKKIGERQKIT 246

Query: 239 YNR---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            +     D  +       A +Q  F   G+  G   F++K+        ILS FL+QFY 
Sbjct: 247 DHPGEDKDIIAAAMEDADAVVQVFFVRDGKLIGRDHFYMKSAPGENRKGILSSFLKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  P+ I+L EE E+  L+      + G KV+I+VPK+G K K++E A  NA     +
Sbjct: 307 GTPFIPKEIMLQEEVEDMELIAKWLESRKGKKVRISVPKKGTKEKLVEMAYHNAKLVLRQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      L    +R+E YD S+I G  +VG MVV  +    ++
Sbjct: 367 DKERIKREEGRTIGAVKEIEALLGLS-GIQRMEAYDISNISGFQSVGSMVVYEKGKPKRS 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V+  +D A M  VL RRF   +   E      + +  SF  +PD++++D
Sbjct: 426 DYRKFKIKS--VQGPNDYASMEEVLTRRFVHGMDEREERKQQLEDEFGSFTRFPDLILMD 483

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL+KL +   I +  + K  K             + + ++        I
Sbjct: 484 GGKGQVNIALEVLEKLQLT--IPVCGMVKDDKHRTRG---LYYNNQEIPISRDSEGFKLI 538

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR  R K   +S LD+I GIG  R++ L++ F  +  I  +S ETL
Sbjct: 539 TRVQDEAHRFAIEYHRSLRSKGQVHSVLDDIPGIGETRRKALMRHFKGLDGIREASVETL 598

Query: 590 ASIEGISKKIACKIYNHFHKNT 611
           ++IE +++K A ++Y+ FHK  
Sbjct: 599 SNIESMNEKAARQVYDFFHKKE 620


>gi|170719186|ref|YP_001784329.1| excinuclease ABC subunit C [Haemophilus somnus 2336]
 gi|189038060|sp|B0UT80|UVRC_HAES2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|168827315|gb|ACA32686.1| excinuclease ABC, C subunit [Haemophilus somnus 2336]
          Length = 609

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 212/619 (34%), Positives = 344/619 (55%), Gaps = 32/619 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D  G+V+YVGKA +L+KR+ SY  +N ++ + + ++S I++I  T+T 
Sbjct: 10  NVTHQPGVYRMFDEKGQVIYVGKAKDLKKRLSSYFRTNLNSKKTSALVSHIHSIETTITA 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +PR+N+LLRDDKS+PYIL+T K + P +  HR S  +QG YFGP
Sbjct: 70  SETEALLLEHNYIKAFQPRYNVLLRDDKSYPYILLT-KERHPRITSHRGSKKVQGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183
           +    AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCSGPC    +S E+Y + 
Sbjct: 129 YPHAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCSGPCIDGLVSDEEYQQQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V  A+ FL G +  + E + + M QA+++ ++E A   RD++ A+  +           +
Sbjct: 189 VDFARLFLQGKDQQVLEHLIKKMEQASMQLNFEQAAYFRDQIQAIRAVIEKQFVSNERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            MD  ++ +   +AC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      
Sbjct: 249 DMDILAIAYQLGIACVQVLFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQG 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  I++     E   LE+   +Q G KV I    +G K K +  A +NA  +   +L
Sbjct: 309 RIIPSTIIVDHVLNEKHELEVLLTEQAGRKVNIQDNVKGNKSKFLHLAQMNAQAALVTQL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                 Q   +   +  +L  I  R+E +D SH MG   +   VV    G +K+ YR+FN
Sbjct: 369 KQANLIQERYQALQELLSLTTIK-RMECFDISHTMGEQTIASCVVFDTEGPLKSDYRRFN 427

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M   L +R+ + ++NE+                PD++ +DGGKGQL
Sbjct: 428 I--SGITAGDDYAAMEQALLKRYDRPLENEK---------------IPDIIFIDGGKGQL 470

Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQR 532
           + A  V  +LNV   +N+  +I +AKG  R AG+E   + K+ + + L      L+ IQ 
Sbjct: 471 NRALQVFAQLNVSWDKNKPLLIGVAKGVDRKAGLETLIISKQNKEVNLLPDSLALHLIQH 530

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H  AI  HRK+R++A   S L+ I G+G  R++ LL+  G ++ +  ++   ++S
Sbjct: 531 IRDESHYHAIGGHRKKRQQAFTQSGLEAIKGVGAKRRQALLKYLGGMQGVKNATLAEISS 590

Query: 592 IEGISKKIACKIYNHFHKN 610
           + GIS  +A +IY      
Sbjct: 591 VPGISAALAERIYETLRSE 609


>gi|261252641|ref|ZP_05945214.1| excinuclease ABC subunit C [Vibrio orientalis CIP 102891]
 gi|260936032|gb|EEX92021.1| excinuclease ABC subunit C [Vibrio orientalis CIP 102891]
          Length = 609

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 207/619 (33%), Positives = 327/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY      + +   ++S I+ I  TV
Sbjct: 10  LKTVTNQPGVYRMYNAEAVVIYVGKAKDLKKRLSSYFRVKVDSEKTRALVSNIDKIDVTV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+P+I ++  HK P L  HR +   +G YF
Sbjct: 70  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPFIFVS-GHKHPRLSMHRGAKKRKGEYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181
           GP+    AV +T++ LQ+ F +R C D+V+ +RTRPCL++QI RC+ PC    IS E+Y 
Sbjct: 129 GPYPDSGAVRETLHLLQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAAPCVSSVISDEEYA 188

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E V   + FL G +  +   +   M QA+    +E A   RD++ A+  +Q       + 
Sbjct: 189 ELVDLVRLFLQGKDQQVLSSLVEKMEQASQSLRFEQAAKFRDQIQAIRRVQEQQFVSEDS 248

Query: 242 MDCF---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           MD            +ACI       G+  G+ + F K  + +T+ ++   FL Q+Y    
Sbjct: 249 MDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPNSTTSQEVFYSFLSQYYLSHN 308

Query: 299 ----CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                P  I+L+    EET  LE +     G +V+  V   G + + ++ +  NA  + T
Sbjct: 309 EARTVPTKIILNHGLVEETKSLEEALSDIAGRRVQFHVNPTGTRGRYLKLSNTNALTAIT 368

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K+  +   +  I  R+E +D SH MG S +   VV    G VK +YR
Sbjct: 369 TKINHKMTISQRFKELRELLEMESIT-RMECFDISHTMGESTIASCVVFNHEGPVKQEYR 427

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+  + +   DD A M   LERR+S+ ++ E+                PD+V +DGGK
Sbjct: 428 RYNI--SGITGGDDYAAMGQALERRYSKQLEVEK---------------IPDIVFIDGGK 470

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++ +   +   R  +I IAKG  R  G+E     +G+   L    P L+ +Q
Sbjct: 471 GQLNRAHEIISQYWGDWPKRPHLIGIAKGVTRKPGLETLITVEGDEFNLPSDAPALHLMQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A
Sbjct: 531 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIA 590

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 591 KVPGISFSLAENIYQALKQ 609


>gi|84394222|ref|ZP_00992950.1| excinuclease ABC subunit C [Vibrio splendidus 12B01]
 gi|84375136|gb|EAP92055.1| excinuclease ABC subunit C [Vibrio splendidus 12B01]
          Length = 610

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 202/619 (32%), Positives = 330/619 (53%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + + E PGVY+M +    V+YVGKA NL+KR+ SY      + +   ++S I+ I  TV
Sbjct: 11  LKTVTEQPGVYRMYNAEAVVIYVGKAKNLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKKKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181
           GP+    AV +T++ +Q+ F  R C D+V+ +RTRPCL++QI RC+ PC    IS E+Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPARQCEDTVYANRTRPCLMYQIGRCTAPCVSSIISDEEYS 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E +   + FL G +  + E +   M++A+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 ELIDYVRLFLQGKDKLVLETLIDKMDKASQELRFEQAAAFRDQIQAIRRVQEQQYVSDDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---- 294
              MD         +ACI       G+  G+ + F K  + +   ++ S FL Q+Y    
Sbjct: 250 MEDMDVLGFAQENGVACIHILMIRQGKVLGSRSHFPKIPNNTVREEVFSSFLSQYYLAHN 309

Query: 295 TDKPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +  P  ++L+ +  E+ + ++ +  +  G K+       G + + ++ +  NA  + T
Sbjct: 310 EARTIPTRLILNADLMEDVTPIQEALCEVAGRKIHFNTNPSGTRGRYLKLSNTNALTAIT 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K+  +  ++  I  R+E +D SH MG S +   VV  + G VK +YR
Sbjct: 370 TKINHKMTINQRFKELQEVLSMDVIK-RMECFDISHTMGESTIASCVVFNQEGPVKPEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M   LERR+S+ +  ++                PD++ +DGGK
Sbjct: 429 RYNI--TGITGGDDYAAMAQALERRYSKQLDVDK---------------IPDIIFIDGGK 471

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++ K   +   R  ++ IAKG  R  G+E     +GE   L    P L+ IQ
Sbjct: 472 GQLNRAHEIISKYWDDWPFRPRMMGIAKGVTRKPGLETLVTLEGEEFNLPSDAPALHLIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R++ E +A
Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQSLLKYMGGLQELKRATVEEIA 591

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 592 KVPGISHSLAENIYQALKQ 610


>gi|260914318|ref|ZP_05920787.1| excision endonuclease subunit UvrC [Pasteurella dagmatis ATCC
           43325]
 gi|260631419|gb|EEX49601.1| excision endonuclease subunit UvrC [Pasteurella dagmatis ATCC
           43325]
          Length = 608

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 212/617 (34%), Positives = 333/617 (53%), Gaps = 32/617 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    V+YVGKA +L+KR+ SY   N  + +   +++ I  I  T+T 
Sbjct: 10  NVPHLPGVYRMYDDKDEVIYVGKAKDLKKRLASYFRRNVGSKKTEALVASIARIDTTITT 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +PR+N+LLRDDKS+PYIL+T   + P +  +R S  ++G YFGP
Sbjct: 70  SETEALLLEHNYIKNYQPRYNVLLRDDKSYPYILLT-SERHPRITSYRGSKKVKGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           +  V AV +T+  LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E Y + 
Sbjct: 129 YPHVSAVRETLALLQKLFPIRQCENSVYNNRSRPCLQYQIGRCSAPCVAGHVSDEDYQQQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V  A+ FL G +  +   +   M QA+ K  +E A   RD++ A+  +           +
Sbjct: 189 VDFARLFLQGKDQQVLAHLISQMEQASQKLHFEEAARIRDQIQAVRAVIEKQFVSNNRID 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            +D  S+ +   +AC+Q  F   G+  G  ++F K  + +  A++   F+ QFY      
Sbjct: 249 DIDIMSIAYQLGIACVQVMFIRQGKVLGNRSYFPKVPANTDLAELTETFVGQFYLQAHQG 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  I++  +  E   LE     Q G+ V I    +GEK K ++ A +NA  +   +L
Sbjct: 309 RTIPNTIVVDHKLIEKKELEELLSLQAGHSVSIQDQTKGEKSKYLQLAQVNAKSALMTQL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                 +   +       +  I +R+E +D SH MG   +   VV   NG +K+ YR+FN
Sbjct: 369 KQSHLVEERYQALQALLGIECI-QRMECFDISHTMGKQTIASCVVFDHNGPLKSDYRRFN 427

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M   L +R+ + ++ ++                PDV+ +DGGKGQL
Sbjct: 428 I--SGITEGDDYAAMEQALLKRYDKPLEEDK---------------VPDVIFIDGGKGQL 470

Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQR 532
           + A  V   L V   +NR  +I +AKG  R AG+E   + K E  L L +    L+ IQ 
Sbjct: 471 NRALQVFASLKVKWNKNRPHLIGVAKGVDRKAGLETLIISKQEVELHLPVDSLALHLIQH 530

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H  AI+ HRK+R++A   S L+ I GIG  R++ LL+  G ++ + +++ + +AS
Sbjct: 531 IRDESHNHAISGHRKKRQQAFIQSGLETIEGIGAKRRQALLKYLGGMQGVKKATLDEIAS 590

Query: 592 IEGISKKIACKIYNHFH 608
           + GIS+ +A KIY    
Sbjct: 591 VPGISRSLAEKIYETLQ 607


>gi|110802431|ref|YP_697662.1| excinuclease ABC subunit C [Clostridium perfringens SM101]
 gi|119367644|sp|Q0SW38|UVRC_CLOPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|110682932|gb|ABG86302.1| excinuclease ABC, C subunit [Clostridium perfringens SM101]
          Length = 620

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 195/619 (31%), Positives = 318/619 (51%), Gaps = 20/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+  PR+NI L+DDK +P+I IT     P +Y  R+ +     
Sbjct: 67  IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV + +  +++ F LR+C  ++      TR CL + I  C  PC G IS  
Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y + + E    L+G + ++ + +   M +A  + ++E A   RDR+ A+  I       
Sbjct: 187 EYWKMIDEIINILNGTDTSIIKNLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D   LY ++   C Q  F   G+  G   F ++  S+    +++S F+  FY 
Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENISDDPVKEVISSFIASFYG 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
                P+ I + EE E+  L+E    ++ G KV I VPK+G+K+ +++    NA     +
Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              + +  +  ++  L +      L  +P RIE YD S+I G  +VG MVV        +
Sbjct: 367 FKEKMVEEKELNKSALIELADVLGLDSLPTRIEAYDISNIQGVDSVGTMVVFENGKAKNS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YR+F +    VK  +D   MR +L RRFS  ++   +    + +  +  F  +PD++++
Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ A  VLK   +E  I +  + K  K       F     E +++     ++  
Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDDKHRTRGIIF---NNEEILIRRGSGLMNL 539

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DE HR+AIT HR  R K+  +S L++I  IG  R+R LL  FG++  I ++S E 
Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599

Query: 589 LASIEGISKKIACKIYNHF 607
           L    GI K+ A  I  +F
Sbjct: 600 LLDTPGIDKRAAESIKQYF 618


>gi|160878485|ref|YP_001557453.1| excinuclease ABC, C subunit [Clostridium phytofermentans ISDg]
 gi|189038041|sp|A9KSS0|UVRC_CLOPH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|160427151|gb|ABX40714.1| excinuclease ABC, C subunit [Clostridium phytofermentans ISDg]
          Length = 628

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 196/629 (31%), Positives = 324/629 (51%), Gaps = 22/629 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M +    ++YVGKA +L+ R++ Y  S+ N + +I  M+S I++  +
Sbjct: 7   ELKKLPAKPGVYIMHNNKDEIIYVGKAISLKNRVRQYFQSSRNLSTKIQQMVSNIDHFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +  +E+EAL+LE N+IK  +P++N +L+DDKS+PYI +T     P +   R     +  
Sbjct: 67  IIVDSEMEALVLECNLIKEHRPKYNTMLKDDKSYPYIKVTVNEAYPRVLFARQQKKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S+ AV+  ++ L+R +F+R+C  ++ +     RPCL + IK+C  PC G IS E
Sbjct: 127 YFGPYTSLGAVKDILDLLRRLYFIRTCNRNLPKDIGLERPCLYYHIKQCKAPCQGYISEE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y + + E  +FL+G    + + +   M  A+   ++E A  +RD + ++  +       
Sbjct: 187 EYRKSIDEVIEFLNGNYALVTKDLQAKMKAASENLEFEEAAGYRDLILSVEKLSQKQKAS 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           D      D  +     + A  Q  F   G+  G   + +   +  + + I++ F++QFY 
Sbjct: 247 DVDGVDRDIIAFASTGDEAVAQVFFIRDGKMLGREHYHITGVANESRSSIMTNFVKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
             P  P  +LLSE  EE  L+      + G KV+I VPK+G+K +++E A  NA     +
Sbjct: 307 GTPYIPRELLLSEPLEEEELISEWLSTKRGQKVRIHVPKKGDKERLVELAEKNASLVLQQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      ++      +LP    R+E +D S+  G  +VG MVV       +N
Sbjct: 367 DSDKIQREEAKTIGAVRHIADMLSLP-GIYRMESFDISNTNGFESVGSMVVYENGKPKRN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVIL 469
            YRKF +    V+  DD A MR VL RRFS   K  E L          SF  +PD++++
Sbjct: 426 DYRKFKIKS--VQGPDDYASMREVLTRRFSHGQKEAEELAKKNIDISHGSFTRYPDLILM 483

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++ A  V+ +L +   I +  + K          F       + ++        
Sbjct: 484 DGGRGQVNIALEVMNELKLT--IPVCGMVKDDNHRTRGLYF---DNVEIPIDTHSEAFRL 538

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DE HRFAI  HR  R KA  +S LD+I+G+G  R+R L++ F ++  I  +S E 
Sbjct: 539 ITRIQDETHRFAIEYHRSLRSKAQVHSILDDIDGVGQTRRRALMKHFASIDAIKAASMED 598

Query: 589 LASIEGISKKIACKIYNHFH-KNTSHTPT 616
           L ++  ++K  A K+Y  FH  +   T T
Sbjct: 599 LMAVPSMNKLSAAKVYEFFHTSSERGTET 627


>gi|225573317|ref|ZP_03782072.1| hypothetical protein RUMHYD_01508 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039329|gb|EEG49575.1| hypothetical protein RUMHYD_01508 [Blautia hydrogenotrophica DSM
           10507]
          Length = 640

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 193/619 (31%), Positives = 325/619 (52%), Gaps = 30/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  ++ N   +I  M++ I    +
Sbjct: 30  ELKKLPARPGVYIMHDEKDTIIYVGKAVSLRNRVRQYFQTSRNKGAKIESMVTHIARFEY 89

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L+DDKS+P+I +T     P +   R     +  
Sbjct: 90  IVTDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKVTVNEAFPRVLFARRMKKDKAK 149

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+  I  +Q+ + +R+C  ++ R   + RPCL + I +C GPC G++S +
Sbjct: 150 YFGPYTSAGAVKDVIELVQKLYHIRTCNRNLPRDIGKERPCLFYHIHQCHGPCQGKVSQD 209

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   +  A KFL+G + ++  ++   M  A+ +  +E A+ +RD   ++  I+      
Sbjct: 210 EYRSQIQGALKFLNGDSDDIFRELEEKMLLASEELRFEDAMEYRDLCNSIRKIKERQKIT 269

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++   +  A +Q  F   G+  G   F+LK     + AQ+LS FL+QFY 
Sbjct: 270 SYGEEDKDVIAMAMEETDAVVQVFFIREGKLIGRDHFYLKVAQGDSRAQVLSSFLKQFYA 329

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  ++L +E E+  +++    ++ G +V + VPK+G K K++E A  NA      
Sbjct: 330 GTPFIPREVMLQDEIEDGVIIQEWLTQRRGQRVYLRVPKKGTKEKLVELAAENAWMVLSK 389

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      L    +RIE YD S+I G  +VG MVV  +    ++
Sbjct: 390 DKERIKREEGRTIGAVKEIESWIGLK-GVQRIEAYDISNISGFESVGSMVVYEKGKPKRS 448

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V+  +D A M  VL RRF+              K+  SF   PD++++D
Sbjct: 449 DYRKFKIKW--VQGPNDYASMEEVLTRRFTH----------ESDKEYDSFALLPDLIMMD 496

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG+GQ++ A  VL+ LN+  +I +  + K              + + + ++        I
Sbjct: 497 GGRGQVNVALKVLENLNL--QIPVCGMVKDDHHRTRG---LYYRNQEIPIDTSSEGFRLI 551

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR  R K   +S LDEI GIGP R++ L++ F +++ +  +S E L
Sbjct: 552 TRIQDEAHRFAIEFHRSLRSKEQVHSVLDEIPGIGPARRKALMRKFKSLEAVRDASLEEL 611

Query: 590 ASIEGISKKIACKIYNHFH 608
              E ++++ A ++Y  FH
Sbjct: 612 IQTEAMNERSARQVYEFFH 630


>gi|292669461|ref|ZP_06602887.1| excision endonuclease subunit UvrC [Selenomonas noxia ATCC 43541]
 gi|292648914|gb|EFF66886.1| excision endonuclease subunit UvrC [Selenomonas noxia ATCC 43541]
          Length = 609

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 196/619 (31%), Positives = 306/619 (49%), Gaps = 40/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M D  G+++YVGKA  L+ R++ Y  S+ N   ++  M+S I +   
Sbjct: 8   KLKLLPDSPGVYIMKDARGKIIYVGKAIVLKNRVRQYFQSSRNQAPKVRAMVSHIADFET 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T  EVE+L+LEAN+IK+ +PR+NI L+DDKS+PY+ +T + + P ++  R        
Sbjct: 68  IMTANEVESLILEANLIKKHRPRYNIRLKDDKSYPYVKVTVQEEFPRVFITRRVLRDGAR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ +V A+  ++  L+R F LR+C         RPCL + IKRC  PC  +++ E Y
Sbjct: 128 YFGPYTNVTALRDSLKLLKRLFPLRTCRIMP----DRPCLEYHIKRCLAPCVEKVTEEDY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              +H    FL G   +++ ++   M+ A     +E+A   RD+L A+       + +  
Sbjct: 184 RAMIHAVLLFLEGRTDDVERELEHRMDLAAEGYHFETAARLRDQLTAVRKAAERQNIVTG 243

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D   +       C+Q  F   G+  G   F L+   E ++A IL  FL Q+Y    
Sbjct: 244 AGDQDAIGMARAAMGVCVQIFFIRGGKMIGREHFHLRGSEEESDADILRAFLEQYYNRAT 303

Query: 299 -CPENILLSEEAEET--SLLEISFFKQY-GYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  ILL    +     ++E    ++  G KV +  P++G K  I+  A  NA      
Sbjct: 304 FVPREILLPHAIDGMGREVIERWLTERRGGGKVTLLTPQRGTKHDIVVMATDNAEKFLAD 363

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             T++   +      +++  ++  L + P R+E +D SH  G   V  MVV       K+
Sbjct: 364 EETRRSLADAETMGAVEELGRRLGLKNPPYRMECFDISHNQGQETVASMVVFEGGLPKKS 423

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR+F +   +    DD   MR V  RR+  L + E                 PD++I+D
Sbjct: 424 DYRRFKIRSAEG-KPDDFLSMREVTTRRYVGLPEKE----------------LPDLIIID 466

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYF 529
           GGKGQLS+A  +++       + ++ +AK        E  F     E + L  R   LY 
Sbjct: 467 GGKGQLSSALEIIRNEAGHKNVPVVGLAKQ------FELVFTEGNSEPIELPRRSQALYL 520

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           IQR+RDEAHRFA+T HRK R K+   S LD I GIG  R++ L   FGT+  I  +S + 
Sbjct: 521 IQRIRDEAHRFAVTFHRKLRGKRNLVSVLDHIVGIGAKRRQSLWNHFGTIDKIKAASIDE 580

Query: 589 LASIEGISKKIACKIYNHF 607
           L    G+++  A  +Y  F
Sbjct: 581 LLKAPGMNRPSAEAVYYFF 599


>gi|227549218|ref|ZP_03979267.1| excinuclease ABC subunit C [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078672|gb|EEI16635.1| excinuclease ABC subunit C [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 689

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 189/682 (27%), Positives = 311/682 (45%), Gaps = 83/682 (12%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
            +P  PGVY+  D AGRV+YVGKA NL+ R+ +Y         R   M+    ++ +TV 
Sbjct: 13  TIPTEPGVYKFRDAAGRVVYVGKAKNLRARLNNYFQPPRQLHPRTRQMVFTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IKR  P FN++ RDDK++P + ++   + P  + +R        YFG
Sbjct: 73  ASEVEALQLEYTWIKRFDPWFNVMYRDDKTYPMLAVSVSERFPRAFFYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV +T++ L R F +R+C++ VF       RPCLL  I +CS PC G ++ ++Y
Sbjct: 133 PYSHAWAVRETLDLLTRVFPIRTCSNGVFNRHEALGRPCLLGYIDKCSAPCVGRVADDEY 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E V     FLSG   ++ +++ R MN A  + ++E A   RD L A+  +      +  
Sbjct: 193 DEIVRGFVSFLSGRTDDVVKQLTRRMNAAAAELEFEKAARLRDDLEAVKKVMERQTVVLS 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI------------ 285
                D  +   ++  A +Q      G+ R    + ++   +   +Q             
Sbjct: 253 LGTDADVIAFATDELEAAVQIFTVRDGRIRAQRGWVVEKTGDEPGSQDRLEEDEADPAVS 312

Query: 286 --LSYFLRQFYTDKP------------------------------------CPENILLSE 307
             +  FL Q+Y+D                                       P  +L+  
Sbjct: 313 ALMQDFLVQYYSDTADRVKEEQAEDARLRESKVRRRGVDQESHAPVTPPVAIPREVLVDT 372

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQ 363
             EE   +     +  G  V I VP++G+K  +++    NA  +  Q+         +  
Sbjct: 373 LPEEAGEVADLIAELRGGPVDIRVPQRGDKAALMQTVGRNAQEALNQRKLKRVGDLTARS 432

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             L+D      +   P R+E  D SHI G   V  +VV  +    KN YR++ +      
Sbjct: 433 QALQDIQDALGMEQAPLRMECTDISHIQGTDVVASLVVFEDGLPRKNDYRRYRIKEAAGD 492

Query: 424 TQ-DDCAMMRMVLERRFSQLIKNE--------------ENLNFHPKKQEYSFPSWPDVVI 468
            + DD   +  V  RRF +  +++              +            F   P + I
Sbjct: 493 GRSDDVGSIAEVTRRRFKRYTEDKLANPDEEAAALMFADEAAQVETTGARRFAYPPQLFI 552

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGK Q++AAQ V  +L + + + +I +AK  +     E +     E ++L      +Y
Sbjct: 553 VDGGKPQVNAAQAVFDELGIVD-VQLIGLAKRLE-----EIWVPDDDEPVILPRNSEGMY 606

Query: 529 FIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +Q++RDEAHRFAIT HR++R K    S LD + G+GP R+  L++ FG+VK I+ ++ E
Sbjct: 607 LLQQIRDEAHRFAITYHRQQRSKRMRASALDGVPGLGPARRTDLVKYFGSVKKITEATKE 666

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            +  ++G+  K+A  IY H H+
Sbjct: 667 EIQQVKGVGPKLAESIYEHLHR 688


>gi|325662451|ref|ZP_08151057.1| UvrABC system protein C [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471285|gb|EGC74509.1| UvrABC system protein C [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 612

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 200/619 (32%), Positives = 329/619 (53%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  ++ N   +I  M++ I+   +
Sbjct: 7   ELKKLPSKPGVYLMHDEKDDIIYVGKAISLKNRVRQYFQASRNKGVKIEQMVTHISRFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDK++P+I +T +   P +   R+    +  
Sbjct: 67  IVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTIEEAYPRILFAREMKKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  L++ + +RSC  ++ +   + RPCL + IK+C  PC   IS E
Sbjct: 127 YFGPYTSAGAVKDTIELLRKLYHIRSCNRNLPKDIGKERPCLNYHIKQCYAPCQNYISQE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E V +A +FLSG    + +++   M  A+   ++E A+ +RD LA++  I       
Sbjct: 187 AYRESVQKAVEFLSGKYDPILKELQEKMECASEAMEFEKAMEYRDLLASVKQIAQKQKIT 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            +     D  ++      A +Q  F   G+  G   F++        A+IL+ F++QFY 
Sbjct: 247 NSDGEDKDILAVATEDRDAVVQVFFIRGGRLIGRDHFYMTITDREPKAEILTSFIKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  +++ +E EE  +LE    ++ G++V I VPK+GEK K++E A  NA      
Sbjct: 307 GTPYVPRELMIQQEIEEQEVLEEWLSERRGHRVHIRVPKKGEKEKLVELAKKNAQLVLST 366

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+  K   +  +  RIE +D S+  G ++VG M+V  +    +N
Sbjct: 367 DKERLKREEGRTIGAVKEIEKWLGIASVK-RIEAFDISNTNGFNSVGSMIVYEKGKPKRN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V+  DD A MR VL RRF   ++  E       K    F ++PD++++D
Sbjct: 426 DYRKFKIKG--VQGADDYASMREVLTRRFEHGMREREE-----GKDHGGFQTFPDLIMMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL +L +   I +  + K                E + ++        I
Sbjct: 479 GGKGQVNIALEVLDQLGI--VIPVCGMVKDDHHRTRG---LYYNNEEIGIDRNSEGFRLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HRK R +   +S LD+I GIGP R++ L++ F ++  I  ++ E L
Sbjct: 534 TRIQDEAHRFAIEFHRKLRSQGQVHSILDDIPGIGPARRKALMKHFMSLDAIKAATIEEL 593

Query: 590 ASIEGISKKIACKIYNHFH 608
             I  +++K A ++YN FH
Sbjct: 594 KEIPSMNEKSANEVYNFFH 612


>gi|319896470|ref|YP_004134663.1| uvrabc system protein c [Haemophilus influenzae F3031]
 gi|317431972|emb|CBY80320.1| UvrABC system protein C [Haemophilus influenzae F3031]
          Length = 609

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 207/616 (33%), Positives = 335/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I   +T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+    +E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQQVLDYLIGKMEQASRNLGFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE    +Q G KV I    +G+K K ++ A +NA  +   +    
Sbjct: 312 PNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQFKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSARYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERNLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVARRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A +I+     +
Sbjct: 594 ISPKLAERIFETLKND 609


>gi|113460804|ref|YP_718871.1| excinuclease ABC subunit C [Haemophilus somnus 129PT]
 gi|119367655|sp|Q0I2X4|UVRC_HAES1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|112822847|gb|ABI24936.1| Excinuclease ABC subunit C [Haemophilus somnus 129PT]
          Length = 609

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 212/619 (34%), Positives = 344/619 (55%), Gaps = 32/619 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D  G+V+YVGKA +L+KR+ SY  +N ++ + + ++S I++I  T+T 
Sbjct: 10  NVTHQPGVYRMFDEKGQVIYVGKAKDLKKRLSSYFRTNLNSKKTSALVSHIHSIETTITA 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +PR+N+LLRDDKS+PYIL+T K + P +  HR S  +QG YFGP
Sbjct: 70  SETEALLLEHNYIKAFQPRYNVLLRDDKSYPYILLT-KERHPRITSHRGSKKVQGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183
           +    AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCSGPC    +S E+Y + 
Sbjct: 129 YPHAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCSGPCIDGLVSDEEYQQQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V  A+ FL G +  + E + + M QA+++ ++E A   RD++ A+  +           +
Sbjct: 189 VDFARLFLQGKDQQVLEHLIKKMEQASMQLNFEQAAYFRDQIQAIRAVIEKQFVSNERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            MD  ++ +   +AC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      
Sbjct: 249 DMDILAIAYQLGIACVQVLFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQG 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  I++     E   LE+   +Q G KV I    +G K K +  A +NA  +   +L
Sbjct: 309 RIIPSTIIVDHVLNEKHELEVLLTEQAGRKVNIQDNVKGNKSKFLHLAQMNAQAALVTQL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                 Q   +   +  +L  I  R+E +D SH MG   +   VV    G +K+ YR+FN
Sbjct: 369 KQANLIQERYQALQELLSLTTIK-RMECFDISHTMGEQTIASCVVFDTEGPLKSDYRRFN 427

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M   L +R+ + ++NE+                PD++ +DGGKGQL
Sbjct: 428 I--SGITAGDDYAAMEQALLKRYDRPLENEK---------------IPDIIFIDGGKGQL 470

Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQR 532
           + A  V  +LNV   +N+  +I +AKG  R AG+E   + K+ + + L      L+ IQ 
Sbjct: 471 NRALQVFAQLNVSWDKNKPILIGVAKGVDRKAGLETLIISKQNKEVNLLPDSLALHLIQH 530

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H  AI  HRK+R++A   S L+ I G+G  R++ LL+  G ++ +  ++   ++S
Sbjct: 531 IRDESHYHAIGGHRKKRQQAFTQSGLEAIEGVGAKRRQALLKYLGGMQGVKNATLAEISS 590

Query: 592 IEGISKKIACKIYNHFHKN 610
           + GIS  +A +IY      
Sbjct: 591 VPGISAALAERIYETLRSE 609


>gi|238799114|ref|ZP_04642569.1| UvrABC system protein C [Yersinia mollaretii ATCC 43969]
 gi|238717022|gb|EEQ08883.1| UvrABC system protein C [Yersinia mollaretii ATCC 43969]
          Length = 588

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 212/606 (34%), Positives = 329/606 (54%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D AG V+YVGKA +L+KR+ SY  +   + +   ++  I  I  TVT TE EALLLE 
Sbjct: 1   MYDKAGTVIYVGKAKDLKKRLTSYFRAQVASRKTETLVKNIAQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPLIFLS-ADTHPRLAIHRGAKHEKGEYFGPFPNSYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y   V   + FLSG
Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVAGLVSDEEYQRQVDYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251
            +  +  ++   M +A+    +E A   RD++ A+  +        +    D   +  + 
Sbjct: 180 KDQQVLTQLISRMEEASKSLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307
            LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
             EE  LL  S  +  G K++I    +G++ + ++ A  NA  +   +LS + +    +K
Sbjct: 300 SLEEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITRLSQQSTIHQRMK 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           +  K   L     R+E +D SH MG   V   VV   NG V+++YR++N+  + +   DD
Sbjct: 360 ELAKILKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL+RR+ + +  ++                PD++ +DGGKGQLS A  V   LN
Sbjct: 417 YAAMSQVLKRRYGKALDEKK---------------IPDIIFIDGGKGQLSQAFDVFASLN 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ +RD++H  AIT
Sbjct: 462 VPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR+RR K    S L+ I GIGP R+++LL+  G ++ +  +S E +A +  IS+ +A K
Sbjct: 522 GHRQRRSKVKNTSALETIEGIGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581

Query: 603 IYNHFH 608
           IYN   
Sbjct: 582 IYNALK 587


>gi|301168650|emb|CBW28241.1| excinuclease UvrABC, endonuclease subunit [Haemophilus influenzae
           10810]
          Length = 609

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 210/616 (34%), Positives = 336/616 (54%), Gaps = 32/616 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I   +T +E 
Sbjct: 13  HEPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTMLTSSET 72

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+  
Sbjct: 73  EALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPH 131

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHE 186
             AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  
Sbjct: 132 AGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVEL 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
           A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD
Sbjct: 192 ARLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPC 299
             S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  
Sbjct: 252 IMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P +I++  +  E S LE    KQ G KV I    +G+K K ++ A +NA  +   +L   
Sbjct: 312 PNSIIVDRQLAEKSELEQLLSKQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQS 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                  +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+  
Sbjct: 372 SRMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A
Sbjct: 431 --ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRA 473

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             V + L V   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RD
Sbjct: 474 LNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRD 533

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ G
Sbjct: 534 ESHNNAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPG 593

Query: 595 ISKKIACKIYNHFHKN 610
           IS K+A  I+     +
Sbjct: 594 ISLKLAETIFETLKND 609


>gi|261820886|ref|YP_003258992.1| excinuclease ABC subunit C [Pectobacterium wasabiae WPP163]
 gi|261604899|gb|ACX87385.1| excinuclease ABC, C subunit [Pectobacterium wasabiae WPP163]
          Length = 610

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 211/618 (34%), Positives = 333/618 (53%), Gaps = 31/618 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D+   V+YVGKA +L+KR+ SY  S+  + +   ++  I +I  T+
Sbjct: 11  LKTVTSQPGVYRMYDVGNTVIYVGKAKDLKKRLASYFRSHVASRKTEALVKSIKHIDVTI 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P + ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPMVFLS-GDAHPRLTIHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF + +AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E Y 
Sbjct: 130 GPFPNGNAVRETLILLQKLFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + V   + FLSG +  +  K+   M  A+ +  +E A   RD++ A+  +        + 
Sbjct: 190 QQVEYVRLFLSGKDQQVLNKLIFRMEAASRELHFEDAARIRDQIQAVRRVTEKQFVSGDG 249

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
             +D  S+  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 EDLDVISVAFDAGMACVYVLFIRQGKVLGSRSYFPKVPGGTELGEVVQTFVGQFYLQGNL 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     +  LL  S     G KV+I    +G++ + ++ A  NA  +   K
Sbjct: 310 GRTLPTEILLDFTLPDKDLLTESLTAVAGRKVQIQTKPRGDRARYLKLARTNAATALVTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP    R+E +D SH MG   V   VV   NG ++++YR++
Sbjct: 370 LSQQSTIHQRLATLANVLQLP-EIHRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL RR+ + + + +                PDV+++DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMAQVLRRRYGKALDDSK---------------IPDVIVIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531
           LS AQ V   L V   +N+  ++ +AKG  R AG+E  F +  GE + L    P L+ IQ
Sbjct: 472 LSQAQSVFDSLQVSWDKNKPLLLGVAKGSDRKAGLETLFFEATGEGVALPADSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RD++H  AI  HRK+R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A
Sbjct: 532 HIRDDSHDHAIGGHRKKRAKVKNTSTLELIEGVGPKRRQTLLKYMGGLQPLMNASIEEIA 591

Query: 591 SIEGISKKIACKIYNHFH 608
           ++ GIS  +A KI++   
Sbjct: 592 NVPGISHALAEKIFHALK 609


>gi|29654488|ref|NP_820180.1| excinuclease ABC subunit C [Coxiella burnetii RSA 493]
 gi|81628906|sp|Q83CD5|UVRC_COXBU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|29541755|gb|AAO90694.1| excinuclease ABC subunit C [Coxiella burnetii RSA 493]
          Length = 609

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 220/618 (35%), Positives = 337/618 (54%), Gaps = 26/618 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P   GVYQM D  G+V+YVGKA NLQKR+ SY      + +   M++Q+ +I+ T+
Sbjct: 10  LKTLPTGSGVYQMQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQSIQTTI 68

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T  E EALLLEA+ IK+ +PR+N+LLRDDKS+PY+ +    K P L  +R +    G YF
Sbjct: 69  TRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKAPGRYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  +V + +  +Q+ F LR C++S F++RTRPCL +QIKRC+ PC G ++ ++Y  
Sbjct: 129 GPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCVGYVNEQEYRR 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            V +A  F  G N  +  K+   M   +    +E A  +RD++  L  +Q          
Sbjct: 189 QVEDAILFFEGKNDQVIIKLTERMEVTSENLVFEEAAHYRDQIRQLRRLQKQQIITGGKG 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296
            +D   +  +         F   G+  G   FF  T   +T    L  F+ Q+Y     +
Sbjct: 249 NIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYYLSPLRN 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              PE I+ SE  E+   ++ +       K+ IT  K+   ++    A +NA ++ +Q L
Sbjct: 309 GDIPERIVTSEPLEDRLWIQRALSSGLNRKLAITDQKRAPYKQWQAMAALNAAQALSQHL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + + +  + L+   K  ALP+   RIE +D SH +G + V   VV GE G +K  YR+FN
Sbjct: 369 AQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGPIKKDYRRFN 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + V   DD   +R  L RR+ +L + E                 PDV+++DGG GQL
Sbjct: 429 I--SGVTPGDDYGALRQALTRRYVRLKEGE--------------GILPDVLLIDGGMGQL 472

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             A  VL++L V   I + +IAKGP R AG+EK FV  + E + L   +   + IQ++RD
Sbjct: 473 RQAAEVLEELQVSGVI-LTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRD 531

Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT H  RR K+   S L EI GIGP R++ LL+ FG ++ + R+S E +A + G
Sbjct: 532 EAHRFAITAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPG 591

Query: 595 ISKKIACKIYNHFHKNTS 612
           +S+ +A  IY+  H++  
Sbjct: 592 VSETLAKAIYDACHQHKG 609


>gi|159038878|ref|YP_001538131.1| excinuclease ABC subunit C [Salinispora arenicola CNS-205]
 gi|189038084|sp|A8LW31|UVRC_SALAI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157917713|gb|ABV99140.1| excinuclease ABC, C subunit [Salinispora arenicola CNS-205]
          Length = 660

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 189/647 (29%), Positives = 305/647 (47%), Gaps = 54/647 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA NL+ R+ SY     N   R   M+    ++ +   
Sbjct: 13  TIPESPGVYRFRDGTGRVIYVGKARNLRSRLNSYFADPVNLHQRTRQMVFTAESVDWISV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL  E   IK+  PRFN+  RDDKS+PY+ +T   + P L   R +      YFG
Sbjct: 73  ATEVEALQQEFTEIKQYDPRFNVRYRDDKSYPYLAVTVDEEFPRLQVMRGAKRRGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIGKCSAPCVGSVSAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V+    F++G    +  ++ R M +A+ + ++E A   RD LAAL         ++ 
Sbjct: 193 RDIVNGFCDFMAGRTDAMVRRLEREMAEASAELEFERAARLRDDLAALRRAMEKQTVVFG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  +   +   A +Q      G+ RG   + ++   + T   ++ +F  Q Y   
Sbjct: 253 DGTDADVVAFADDPLEAAVQVFHVRDGRIRGQRGWVVEKTEDLTAGDLVHHFCTQVYGGE 312

Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +   P  +L+ E   +   L     +  G +V + VP++G+KR ++E    NA  +  
Sbjct: 313 HGEAHVPRELLVPELPADVEALADWLSEHRGSRVTLRVPQRGDKRALLETVARNATDALA 372

Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +          +    L +      +   P RIE +D S I G   V  MVV  +    K
Sbjct: 373 RHKLKRAGDLTTRSKALDEIADTLGMRTAPLRIECFDISQIQGTDVVASMVVFEDGLPRK 432

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN--------------------- 448
           ++YR+F +        DD + M  VL RRF++ +                          
Sbjct: 433 SEYRRFIIRG----ATDDLSAMSEVLRRRFARYLDARAETGEAGVESAGDPDAPAGPDAP 488

Query: 449 -------LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501
                  L      +   F   P +V++DGG  Q++AA   L +L V++ + +  +AK  
Sbjct: 489 DEPRVGTLVDPTTGRPRKFAYPPQLVVVDGGAPQVAAAAQALAELGVDD-VALCGLAKRL 547

Query: 502 KRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEI 560
           +     E +        +L      LY +QR+RDEAHRFAIT HR+RR  +   S LD +
Sbjct: 548 E-----EVWLPDDDFPAILPRTSEGLYLLQRVRDEAHRFAITFHRQRRSRRMTESALDRV 602

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G+G +R++ LL+ FG++K ++ +S E +  + GI K+ A  I    
Sbjct: 603 SGLGEVRRKALLRHFGSLKRLAAASVEEITEVPGIGKRTAEAILAAL 649


>gi|168204466|ref|ZP_02630471.1| excinuclease ABC, C subunit [Clostridium perfringens E str.
           JGS1987]
 gi|170664072|gb|EDT16755.1| excinuclease ABC, C subunit [Clostridium perfringens E str.
           JGS1987]
          Length = 620

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 197/619 (31%), Positives = 319/619 (51%), Gaps = 20/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+  PR+NI L+DDK +P+I IT     P +Y  R+ +     
Sbjct: 67  IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV + +  +++ F LR+C  ++      TR CL + I  C  PC G IS  
Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y E + E    L+G + ++ +K+   M +A  + ++E A   RDR+ A+  I       
Sbjct: 187 EYWEMIDEIINILNGTDTSIIKKLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D   LY ++   C Q  F   G+  G   F ++  S+    +++S F+  FY 
Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENISDDPVKEVISSFIASFYG 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
                P+ I + EE E+  L+E    ++ G KV I VPK+G+K+ +++    NA     +
Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              + +  +  ++  L +      L  +P RIE YD S+I G  +VG MVV        +
Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPVRIEAYDISNIQGVDSVGTMVVFENGKAKNS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YR+F +    VK  +D   MR +L RRFS  ++   +    + +  +  F  +PD++++
Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ A  VLK   +E  I +  + K  K       F     E +++     ++  
Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDHKHRTRGIIF---NNEEILIRRGSGLMNL 539

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DE HR+AIT HR  R K+  +S L++I  IG  R+R LL  FG++  I ++S E 
Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599

Query: 589 LASIEGISKKIACKIYNHF 607
           L    GI K+ A  I  +F
Sbjct: 600 LLDTPGIDKRAAESIKQYF 618


>gi|312110004|ref|YP_003988320.1| excinuclease ABC, C subunit [Geobacillus sp. Y4.1MC1]
 gi|311215105|gb|ADP73709.1| excinuclease ABC, C subunit [Geobacillus sp. Y4.1MC1]
          Length = 590

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 181/613 (29%), Positives = 300/613 (48%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y M D  G V+YVGKA  L+ R++SY     H  +   ++++I +  + VT +
Sbjct: 12  LPEQPGCYLMKDKNGTVIYVGKAKVLKNRVRSYFTGT-HDGKTQRLVNEIADFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEAL+LE N+IK+  P++N++L+DDKS+P+I IT   K P L   R      G YFGP+
Sbjct: 71  NVEALILEMNLIKKYDPKYNVMLKDDKSYPFIKIT-AEKHPRLVITRKVKKDGGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+        R CL + + +C  PC   +S ++  E V 
Sbjct: 130 PNVQAANETKKLLDRIYPLRKCSTMP----NRVCLYYHMGQCLAPCVHPVSEQQNKEIVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FL+GG   +KE++A  M +A    ++E A  +RD+++ +         + N     
Sbjct: 186 QIVRFLNGGYKEVKEELAEKMRKAAEALEFERAKEYRDQISHIEATMEKQKMVINDFVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             +     +          +   P+ 
Sbjct: 246 DVFGYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQDPDEEFLTFLGQFYTKANHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           ++L  + +           +   +V +  PK+G+K+++++ A  NA              
Sbjct: 306 VILPADMDGE-------LAEQLLEVTVVQPKKGKKKELVDLASKNAAIALQEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K   +P    RIE +DNS+I G   V  MVV  +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKILGIPTP-HRIEAFDNSNIHGADPVSAMVVFIDGKPEKKEYRKYKVK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++K +                 PD++I+DGGKG L+A
Sbjct: 418 T--VEGPDDYESMREVVRRRYTRVLKEK--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L ++  I +  +AK  K     E       + + L       Y +QR++DE 
Sbjct: 462 ARDVLENELGLD--IPLAGLAKDDKHRTS-ELIMGDPPQVVPLARNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA+T HR+ R K    S LD+I G+G  RK+ LL+ FG++K +  ++ E L     I 
Sbjct: 519 HRFAVTFHRQTRGKTMLRSVLDDIPGVGEKRKKALLKHFGSIKNMREATVEELQKA-NIP 577

Query: 597 KKIACKIYNHFHK 609
           + +A KIY    +
Sbjct: 578 RSVAEKIYEKLRE 590


>gi|332799512|ref|YP_004461011.1| UvrABC system protein C [Tepidanaerobacter sp. Re1]
 gi|332697247|gb|AEE91704.1| UvrABC system protein C [Tepidanaerobacter sp. Re1]
          Length = 609

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 214/616 (34%), Positives = 334/616 (54%), Gaps = 31/616 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
             PE PGVY M D   R++YVGKA +L+ R++SY  S  +   ++  MIS++ NI + VT
Sbjct: 9   DFPEKPGVYIMKDKRNRIIYVGKAVSLKNRVRSYFQSPKNLPIKVASMISKVENIEYIVT 68

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL+LE N+IK  +P++NILLRDDK +PYI IT     P L   R     +  YFG
Sbjct: 69  DSEVEALILECNLIKFNRPKYNILLRDDKQYPYIRITLNQPFPRLEVVRRVKQDKARYFG 128

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADS--VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           P+A V A+ + I+ + + F +RSC         + RPCL + IKRC  PC G I +E+Y 
Sbjct: 129 PYADVGAMREAIDVINKIFPIRSCRKDLSQIPLKERPCLNYHIKRCLAPCQGFIEAEEYD 188

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E +     FL G    L +++   M +A    ++E A   RD++AAL  +      +   
Sbjct: 189 EIIKNIIMFLEGKQETLVKQLKEKMQEAADNLNFEKAAALRDQIAALEKVLEEQKIVSTD 248

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297
           M   D  ++    ++ CIQ  F   G+  G   F L   + +   +IL+ F++QFY +  
Sbjct: 249 MIDQDIIAMARGIDMVCIQVFFVREGKVVGREPFILSNTNGAERREILTAFVKQFYNNAN 308

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHT 353
             P+ I++ E+ ++ S +E     + G KV + +PK+GEK+K+ E    NA     +  +
Sbjct: 309 FIPDEIIIDEDIDDKSTIEEWLKHKKGSKVYVIIPKRGEKKKLAEMVAENARIYLDQVDS 368

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +    ++ +   L++  +   L  IP+RIE +D S+  G  +V  MVV  E    K  YR
Sbjct: 369 KDEREKLRNLQALEELKQYLNLEDIPRRIEAFDISNTQGAESVASMVVFEEAQPKKEDYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           KF +    VK  +D   M+ V+ RRF + +  ++            F + PD++++DGGK
Sbjct: 429 KFKIRT--VKGPNDFESMKEVVFRRFKRALSGDK-----------KFNNLPDLLLIDGGK 475

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQL  A+  LK+L +   I  I++A+  +       F     E ++L      LY +QR+
Sbjct: 476 GQLKYARQALKELGLS-FIPTIALAEEFEH-----IFTEGNDEPIILPENSEALYLVQRI 529

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFA++ HR  R K+   S L++I GIG  R+  LL++FG ++ I ++S E LAS 
Sbjct: 530 RDEAHRFALSFHRSLRTKRNLKSVLEDIPGIGKARRLALLKTFGGLEGIKQASLEELASA 589

Query: 593 EGISKKIACKIYNHFH 608
            G++KK A  +Y +FH
Sbjct: 590 PGMNKKAAQAVYEYFH 605


>gi|169344093|ref|ZP_02865079.1| excinuclease ABC, C subunit [Clostridium perfringens C str.
           JGS1495]
 gi|169297828|gb|EDS79925.1| excinuclease ABC, C subunit [Clostridium perfringens C str.
           JGS1495]
          Length = 620

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 196/619 (31%), Positives = 318/619 (51%), Gaps = 20/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+  PR+NI L+DDK +P+I IT     P +Y  R+ +     
Sbjct: 67  IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV + +  +++ F LR+C  ++      TR CL + I  C  PC G IS  
Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y E + E    L+G + ++ +K+   M +A  + ++E A   RDR+ A+  I       
Sbjct: 187 EYWEMIDEIINILNGTDTSIIKKLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D   LY ++   C Q  F   G+  G   F ++   +    +++S F+  FY 
Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENIGDDPVKEVISSFIASFYG 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
                P+ I + EE E+  L+E    ++ G KV I VPK+G+K+ +++    NA     +
Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMIDQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              + +  +  ++  L +      L  +P RIE YD S+I G  +VG MVV        +
Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPTRIEAYDISNIQGVDSVGTMVVFENGKAKNS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YR+F +    VK  +D   MR +L RRFS  ++   +    + +  +  F  +PD++++
Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ A  VLK   +E  I +  + K  K       F     E +++     ++  
Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDHKHRTRGIIF---NNEEILIRRGSGLMNL 539

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DE HR+AIT HR  R K+  +S L++I  IG  R+R LL  FG++  I ++S E 
Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599

Query: 589 LASIEGISKKIACKIYNHF 607
           L    GI K+ A  I  +F
Sbjct: 600 LLDTPGIDKRAAESIKQYF 618


>gi|320530670|ref|ZP_08031716.1| excinuclease ABC subunit C [Selenomonas artemidis F0399]
 gi|320137078|gb|EFW29014.1| excinuclease ABC subunit C [Selenomonas artemidis F0399]
          Length = 608

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 188/618 (30%), Positives = 309/618 (50%), Gaps = 38/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M D  G+++YVGKA  L+ R++ Y  S+ N   ++  M+S + +   
Sbjct: 8   KLKLLPDTPGVYIMKDERGKIIYVGKAIVLKNRVRQYFQSSRNQAPKVRAMVSHVADFET 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T  EVE+L+LEAN+IK+ +PR+NI L+DDKS+PY+ +T +   P ++  R        
Sbjct: 68  IMTANEVESLILEANLIKKHRPRYNIRLKDDKSYPYVKVTMQEDFPRVFITRRVLRDGAR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ +V A+  ++  L+R F LR+C     +   RPCL + IKRC  PC  +++ E Y
Sbjct: 128 YFGPYTNVTALRDSLKLLKRLFPLRTCR----KMPERPCLEYHIKRCLAPCVDKVTKEDY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              +     FL G   +++ ++ + M  A     +E+A   RD+L ++       + +  
Sbjct: 184 AAMIRAVLLFLEGRTDDVERELEQRMQLAAEAYHFETAARLRDQLVSVRKAAERQNIVTG 243

Query: 241 RMDCFS--LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             D  +  +       C+Q  F   G+  G   F L+   E  +  +L  FL Q+Y    
Sbjct: 244 AGDQDAVGMARAGAGVCVQIFFIRGGKMIGREHFLLRGSDEERDEDVLRAFLEQYYNAAT 303

Query: 299 -CPENILLSEEA---EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  +LL  +    E   +      K+ G +V +  P++G KR I+  A  NA      
Sbjct: 304 FVPREVLLPLDIGAAERAVIERWLADKKGGGRVALLTPQRGTKRDIVVMATGNARKFLAD 363

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             T++   +  +   +++  +   L   P R+E +D SH  G   V  MVV       K+
Sbjct: 364 EETRRALADEQNMGAVEELGRYLGLKKAPYRMECFDISHNQGQETVASMVVFEGGMPKKS 423

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR+F +   +    DD   MR V  RR+  L   E                 PD++I+D
Sbjct: 424 DYRRFKIRSAEG-KPDDFLSMREVTTRRYVGLPAEE----------------LPDLIIID 466

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLS+A  +++     + + ++ +AK  +       F   + E + L  R   LY +
Sbjct: 467 GGKGQLSSALEIIRGAAGHSAVPVVGLAKQFEL-----IFVEGESEPVELPRRSDALYLV 521

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDEAHRFAIT HR  R K+   S LD I G+GP R++ L + FGT++ +  +S + L
Sbjct: 522 QRIRDEAHRFAITYHRNLRGKRNLVSVLDHIVGVGPKRRQALREHFGTIEKMKAASVDEL 581

Query: 590 ASIEGISKKIACKIYNHF 607
            S+ G+++  A  +++ F
Sbjct: 582 VSVRGMNRPAAEAVFHFF 599


>gi|153814597|ref|ZP_01967265.1| hypothetical protein RUMTOR_00811 [Ruminococcus torques ATCC 27756]
 gi|145848091|gb|EDK25009.1| hypothetical protein RUMTOR_00811 [Ruminococcus torques ATCC 27756]
          Length = 624

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 199/619 (32%), Positives = 318/619 (51%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N   +I  M++ I    +
Sbjct: 18  ELKKLPARPGVYLMHDERDEIIYVGKAISLKNRVRQYFQSSRNKGVKIEQMVTHIRRFEY 77

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK   P++N +L DDK++P+I +T     P +   R     +  
Sbjct: 78  IVTDSELEALVLECNLIKEHHPKYNTMLMDDKTYPFIKVTVNEPFPRVLLARKMLKDKAK 137

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV  TI+ + + + +RSC  ++ +   + RPCL + IK+C  PC G IS E
Sbjct: 138 YFGPYTSAQAVRDTIDLIHKLYHVRSCNRNLPKDIGKERPCLNYHIKQCDAPCQGYISQE 197

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
            Y   + E  KFL+G    + +++   MN A+   ++E AI +R+ + ++  I       
Sbjct: 198 DYGAAIAEVLKFLNGNYDVILKELEEKMNTASENLEFERAIEYRELINSVKKIAQKQKIT 257

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           DS     D  +       A +Q  F   G+  G   F+L+  S    + IL  F++Q+Y 
Sbjct: 258 DSSGEDRDILAAASEGEDAVVQVFFIRGGRLIGRDHFYLRISSGEKTSGILDSFIKQYYA 317

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  +++ EE ++  L+E     + G KV + VPK+G K K++E A  NA      
Sbjct: 318 GTPYIPGELMIQEEIKDRELIETWLTSKRGQKVTVKVPKKGTKEKLVELASDNAKLVLSK 377

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      +  I  R+E YD S+  G  +VG MVV       +N
Sbjct: 378 DKERMRREEGRTIGAVKEIEALLGISQIR-RMEAYDISNTNGFESVGSMVVYERGKPKRN 436

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    ++  DD   MR VL RRF+  +K  E        +   F  +PD++++D
Sbjct: 437 DYRKFKIKG--IQGADDYGSMREVLTRRFTHGLKEREE-----NGELGKFTVFPDLILMD 489

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL+ LN+   I +  + K          F   + E + +         I
Sbjct: 490 GGKGQVNVALQVLEDLNL--NIPVCGMVKDDFHRTRGLYF---QNEEISIEKSSEAFRLI 544

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR+ R K   +S LD+I GIGP R++ L++ + ++  I  +S E L
Sbjct: 545 TRIQDEAHRFAIEYHRQLRGKGQVHSILDDIEGIGPARRKALMRHYLSLDAIKAASIEEL 604

Query: 590 ASIEGISKKIACKIYNHFH 608
           A +  +++K A  +YN FH
Sbjct: 605 AKLPSMNEKAAQAVYNFFH 623


>gi|110800325|ref|YP_694801.1| excinuclease ABC subunit C [Clostridium perfringens ATCC 13124]
 gi|168210457|ref|ZP_02636082.1| excinuclease ABC, C subunit [Clostridium perfringens B str. ATCC
           3626]
 gi|119367643|sp|Q0TU89|UVRC_CLOP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|110674972|gb|ABG83959.1| excinuclease ABC, C subunit [Clostridium perfringens ATCC 13124]
 gi|170711527|gb|EDT23709.1| excinuclease ABC, C subunit [Clostridium perfringens B str. ATCC
           3626]
          Length = 620

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 197/619 (31%), Positives = 319/619 (51%), Gaps = 20/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+  PR+NI L+DDK +P+I IT     P +Y  R+ +     
Sbjct: 67  IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV + +  +++ F LR+C  ++      TR CL + I  C  PC G IS  
Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y E + E    L+G + ++ +K+   M +A  + ++E A   RDR+ A+  I       
Sbjct: 187 EYWEMIDEIINILNGTDTSIIKKLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D   LY ++   C Q  F   G+  G   F ++  S+    +++S F+  FY 
Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENISDDPVKEVISSFIASFYG 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
                P+ I + EE E+  L+E    ++ G KV I VPK+G+K+ +++    NA     +
Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              + +  +  ++  L +      L  +P RIE YD S+I G  +VG MVV        +
Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPARIEAYDISNIQGVDSVGTMVVFENGKAKNS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YR+F +    VK  +D   MR +L RRFS  ++   +    + +  +  F  +PD++++
Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ A  VLK   +E  I +  + K  K       F     E +++     ++  
Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDHKHRTRGIIF---NNEEILIRRGSGLMNL 539

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DE HR+AIT HR  R K+  +S L++I  IG  R+R LL  FG++  I ++S E 
Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599

Query: 589 LASIEGISKKIACKIYNHF 607
           L    GI K+ A  I  +F
Sbjct: 600 LLDTPGIDKRAAESIKQYF 618


>gi|295399437|ref|ZP_06809419.1| excinuclease ABC, C subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978903|gb|EFG54499.1| excinuclease ABC, C subunit [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 590

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 181/613 (29%), Positives = 300/613 (48%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y M D  G V+YVGKA  L+ R++SY     H  +   ++++I +  + VT +
Sbjct: 12  LPEQPGCYLMKDKNGTVIYVGKAKVLKNRVRSYFTGT-HDGKTQRLVNEIADFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEAL+LE N+IK+  P++N++L+DDKS+P+I IT   K P L   R      G YFGP+
Sbjct: 71  NVEALILEMNLIKKYDPKYNVMLKDDKSYPFIKIT-AEKHPRLVITRKVKKDGGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+        R CL + + +C  PC   +S ++  E V 
Sbjct: 130 PNVQAANETKKLLDRIYPLRKCSTMP----NRVCLYYHMGQCLAPCVHPVSEQQNKEIVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FL+GG   +KE++A  M +A    ++E A  +RD+++ +         + N     
Sbjct: 186 QIVRFLNGGYKEVKEELAEKMRKAAEALEFERAKEYRDQISHIEATMEKQKMVINDFVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             +     +          +   P+ 
Sbjct: 246 DVFGYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQDPDEEFLTFLGQFYTKANHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           ++L  + +           +   +V +  PK+G+K+++++ A  NA              
Sbjct: 306 VILPADMDGE-------LAEQLLEVTVVQPKKGKKKELVDLASKNAAIALQEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K   +P    RIE +DNS+I G   V  MVV  +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKILGIPTP-HRIEAFDNSNIHGADPVSAMVVFIDGKPEKKEYRKYKVK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++K +                 PD++I+DGGKG L+A
Sbjct: 418 T--VEGPDDYESMREVVRRRYTRVLKEK--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L ++  I +  +AK  K     E       + + L       Y +QR++DE 
Sbjct: 462 ARDVLENELGLD--IPLAGLAKDDKHRTS-ELIMGNPPQVVPLARNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA+T HR+ R K    S LD+I G+G  RK+ LL+ FG++K +  ++ E L     I 
Sbjct: 519 HRFAVTFHRQTRGKTMLRSVLDDIPGVGEKRKKALLKHFGSIKNMREATVEELQKA-NIP 577

Query: 597 KKIACKIYNHFHK 609
           + +A KIY    +
Sbjct: 578 RSVAEKIYEKLRE 590


>gi|119367631|sp|Q7WH66|UVRC_BORBR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367633|sp|Q7W9J4|UVRC_BORPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 609

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/614 (35%), Positives = 328/614 (53%), Gaps = 28/614 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+ LD AG V+YVGKA +L+KR+ SY   N  + RI  M++++ ++  TVT 
Sbjct: 13  DLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTR 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L+PR+NIL RDDKS+PY+LIT  H  P +  +R +++ +G YFGP
Sbjct: 73  SEAEALLLENNLIKSLRPRYNILFRDDKSYPYLLIT-GHAWPRIAYYRGATSKRGQYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  AV +TI  LQ+ F LR+C D+VF +R+RPCLL QI RCS PC G I +  Y   V
Sbjct: 132 YPNSWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAGDYAHDV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241
             A +FL+G    + ++I   M QA+ +  +E A + RD++ +LS + +     +   + 
Sbjct: 192 QRAVRFLNGEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  ++       C+       G++ G   FF         AQ+L  F+ Q Y D   P 
Sbjct: 252 TDVIAVASAGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPP 311

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++ S    ++ L+ +   +      ++    QG +R  +EQA  NA  +  + L+   +
Sbjct: 312 VLVCSHALPDSGLVGLLAEQGGTRAARVLTRPQGVRRSWLEQAQKNAEMALARALTESGA 371

Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                    +   L    +     RIE +D SH  G +     VV   +    + YR++N
Sbjct: 372 RAGRTLALAEALDLDTDEESLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYN 431

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A MR VL RRF ++   E                 P +V++DGGKGQ+
Sbjct: 432 IVG--ITPGDDYAAMRQVLTRRFGKVADGE--------------APMPGLVLIDGGKGQV 475

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535
             A+ V  +L ++ + +++ +AKG  R  G+E      G   + L      L  I ++RD
Sbjct: 476 EVARQVFVELGLDIQ-SLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRD 534

Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT  R RR K    S L+EI GIG  R++ LL  FG +  +S +S E LAS+EG
Sbjct: 535 EAHRFAITGMRARRAKTRNVSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEG 594

Query: 595 ISKKIACKIYNHFH 608
           IS+++A +IY+  H
Sbjct: 595 ISQELAVRIYDALH 608


>gi|328881629|emb|CCA54868.1| Excinuclease ABC subunit C [Streptomyces venezuelae ATCC 10712]
          Length = 658

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 181/623 (29%), Positives = 308/623 (49%), Gaps = 33/623 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+P+ PGVY+  D   RV+YVGKA +L++R+ +Y     +   R   M++   ++ +
Sbjct: 10  KPGQIPDSPGVYKFRDEHRRVIYVGKAKSLRQRLANYFQPITSLHPRTATMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R        
Sbjct: 70  TVVSTEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKKKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A   A+ +T++ + R F +R+C+  VFR+     RPCLL  I +CS PC G ++ 
Sbjct: 130 YFGPYAHAWAIRETVDLMLRVFPVRTCSAGVFRNAASAGRPCLLGYIGKCSAPCVGRVTP 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E   E   F++G       ++ + M  A    +YE A   RD + AL      +  
Sbjct: 190 EEHRELAEEFSDFMAGRTGTYIRRLEKQMMLAAEDMEYEKAARLRDDIEALRRAMEKSAV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  +L  ++  A +Q      G+ RG   +          A ++ + ++Q Y
Sbjct: 250 VLADATDADLIALAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHAIQQLY 309

Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    E+T  +      + G  V + +P++G+K+ ++     NA ++
Sbjct: 310 GEESGDTVPKEVLVPALPEDTEAVTAWLAGRRGSNVSLRIPQRGDKKDLMATVARNAQQA 369

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P RIE +D SH+ G   V  MVV  +   
Sbjct: 370 LVLHKTKRASDLTTRSRALEEIAEALDLDSAPLRIECFDISHLQGEDVVASMVVFEDGLP 429

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL----------NFHPKKQE 457
            K++YR+F +     + QDD   M  V+ RRF + +  +E            +     + 
Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFRRYLAEKEKTGEWDAEGVVEDPDETGRP 487

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
             F   P +V++DGG+ Q++AA+  L +L +++ I +  +AK  +     E +     + 
Sbjct: 488 KRFAYPPQLVVVDGGQPQVAAARRALDELGIDD-IAVCGLAKRLE-----EVWLPGDDDP 541

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFG 576
           +VL      LY +QR+RD AH FAI   R +R K+   SPLD + G+G  RKR L++ FG
Sbjct: 542 VVLPRSSEGLYLLQRVRDTAHDFAIRYQRSKRAKRIRTSPLDAVPGLGDTRKRALIKHFG 601

Query: 577 TVKMISRSSPETLASIEGISKKI 599
           +VK + +++ E +  + G+ +K 
Sbjct: 602 SVKRLRQATIEQICEVPGMGRKT 624


>gi|118472646|ref|YP_887394.1| excinuclease ABC subunit C [Mycobacterium smegmatis str. MC2 155]
 gi|189038068|sp|A0QWV6|UVRC_MYCS2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|118173933|gb|ABK74829.1| excinuclease ABC, C subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 706

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/643 (29%), Positives = 300/643 (46%), Gaps = 47/643 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   M+    ++ +TV 
Sbjct: 13  SIPVEPGVYRFRDPHGRVIYVGKAKSLRSRLTSYFADITSLAPRTRQMVMTAGSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  TTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEYPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHKQIDRPCLLGYIDKCSAPCVGRVSAEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FL G    L + + + M  A  + D+E A   RD ++AL         ++ 
Sbjct: 193 RQIVLDFCDFLGGKTDRLAKDMEQQMTAAAEQLDFERAARLRDDISALKRALEKQAVVFG 252

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-----------STNAQIL 286
                D  +   +   A +Q      G+ RG   + ++  SE           S   Q++
Sbjct: 253 DGTDADVVAFADDDLEAAVQVFHVRGGRVRGQRGWIVEKSSEPAATGDADLGQSGQEQLV 312

Query: 287 SYFLRQFYTD----------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKIT 330
             FL QFY +                 P P  +L+         L        G +V + 
Sbjct: 313 EQFLTQFYGEQAELGSASDTGGDEATNPVPRQVLVPVLPPNADELATWLSGLRGSRVSLR 372

Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI----LKDFTKKFALPHIPKRIEIYD 386
           VP +G+KR + E    NA  +  Q               L+   +   L   P RIE  D
Sbjct: 373 VPVRGDKRALAETVQRNAQEALAQHKLKRAGDFNARSEALQSIQEALGLADAPLRIECVD 432

Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN 445
            SH+ G   V  +VV  +    K+ YR + +       + DD A +  V  RRF +   +
Sbjct: 433 ISHVQGTDVVASLVVFEDGLPRKSDYRHYAIREAAGDGRSDDVASIAEVTRRRFLRHTSD 492

Query: 446 EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505
            +  +   +++   F   P++ ++DGG  Q++AA  VL+ L V++ + +I +AK  +   
Sbjct: 493 SQP-DPSAEQRPRRFAYPPNLFVVDGGAPQVNAAAAVLEDLGVDD-VAVIGLAKRLE--- 547

Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIG 564
             E +   + + ++L      LY +QR+RDEAHRFAI+ HR +R K    S LD + G+G
Sbjct: 548 --EVWVPSEPDPVILPRNSEGLYLLQRVRDEAHRFAISYHRSKRSKRMTASALDSVRGLG 605

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             R++ L+  FG+V  +  ++ + + ++ GI    A  +    
Sbjct: 606 EHRRKALVAHFGSVARLKEATVDEITAVPGIGVATARAVQEAL 648


>gi|68536082|ref|YP_250787.1| excinuclease ABC subunit C [Corynebacterium jeikeium K411]
 gi|90111064|sp|Q4JVI8|UVRC_CORJK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|68263681|emb|CAI37169.1| excinuclease ABC, subunit C [Corynebacterium jeikeium K411]
          Length = 690

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 193/686 (28%), Positives = 320/686 (46%), Gaps = 87/686 (12%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY   D   RV+YVGKA NL+ R+ +Y    +    R   M+   N++++TV 
Sbjct: 12  SIPTDPGVYTFRDAHERVIYVGKAKNLRARLSNYFQDLDQLHPRTRAMVQSANHVQWTVV 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EAL LE   IKR  PRFN++ RDDK++P + I+ K +IP  + +R        YFG
Sbjct: 72  SSELEALNLEYTWIKRFNPRFNVMYRDDKTYPMLAISVKEQIPRAFMYRGPRRKGVRYFG 131

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T+ SL R F +R+C+  V+R      RPCLL  I RCS PC G+I+ E +
Sbjct: 132 PYPKAWAIRETLESLTRVFPIRTCSAGVYRRHEALGRPCLLGYIDRCSAPCVGKITPEDH 191

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V +   FL+G    +  ++ + M QA+   D+E A   RD+L A+         +++
Sbjct: 192 RALVDQFSSFLAGNTEPVLRRVRKEMEQASENLDFERAASLRDQLQAMQKSMERQAVVFS 251

Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +   ++  A +Q      G+  G   + ++   + +  ++++ F+ QFY + 
Sbjct: 252 DNTDADLIAFVADELEAAVQIFHVRGGRIHGQRGWVVER-EDLSEEKLVADFITQFYGET 310

Query: 298 ---------------------------------------------PCPENILLSEEAEET 312
                                                        P P  IL+    ++ 
Sbjct: 311 AELAKATETQVGGASGPEVDRDLARAINPAAAQDLGDLVGDVQVTPVPREILVHAMPDDA 370

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKD 368
             L        G  ++I VP++G+K+ ++  A  NA ++  Q          +    LK+
Sbjct: 371 DDLAAWLTSLRGSNMQIRVPQRGDKKALMTTAETNATQALAQHKLKRAGDITARSAALKE 430

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DD 427
             +   +   P RIE  D SHI G   V  +VV  +    K  YR++ +         DD
Sbjct: 431 LQEALWMDESPLRIECTDISHIQGTDVVASLVVFEDGLPKKADYRRYKIRDAAGDGHSDD 490

Query: 428 CAMMRMVLERRFSQLIKNEENLN----------------------FHPKKQEYSFPSWPD 465
            A +  V+ RRF +  +++  +                         P  ++  F   P 
Sbjct: 491 VASIAEVVRRRFKRYQQDKSAVPAGDDAGDLLEGETELEDNSAEGTDPATEKRKFAYPPQ 550

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           + I+DGG  Q++AAQ VL +L V N +T++ IAK  +     E +   +   +++    P
Sbjct: 551 LFIVDGGLPQVNAAQEVLDELGV-NDVTLVGIAKRLE-----EIWVPGEEYPIIVPRNSP 604

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            LY +Q LRDEAHRFAIT HR++R  +   S LD+I G+GP R++ L++ FG+V  +  +
Sbjct: 605 ALYLVQNLRDEAHRFAITFHRQQRSARMRRSKLDDIPGLGPKRRKQLVKEFGSVARVKEA 664

Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610
           S E +A++ G   K+A  I++  +  
Sbjct: 665 SVEDIAALPGFGPKLAQLIHDALNAE 690


>gi|212212426|ref|YP_002303362.1| excinuclease ABC subunit C [Coxiella burnetii CbuG_Q212]
 gi|226698347|sp|B6IZT9|UVRC_COXB2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|212010836|gb|ACJ18217.1| excinuclease ABC subunit C [Coxiella burnetii CbuG_Q212]
          Length = 609

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/618 (35%), Positives = 338/618 (54%), Gaps = 26/618 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P   GVYQM D  G+V+YVGKA NLQKR+ SY      + +   M++Q+ +I+ T+
Sbjct: 10  LKTLPTGSGVYQMQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQSIQTTI 68

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T  E EALLLEA+ IK+ +PR+N+LLRDDKS+PY+ +    K P L  +R +    G YF
Sbjct: 69  TRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKAPGRYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  +V + +  +Q+ F LR C++S F++RTRPCL +QIKRC+ PC G ++ ++Y  
Sbjct: 129 GPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCVGYVNEQEYRR 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            V +A  F  G N  +  K+   M  A+    +E A  +RD++  L  +Q          
Sbjct: 189 QVEDAILFFEGKNDQVIIKLTERMEVASENLVFEEAAHYRDQIRQLRRLQKQQIITGGKG 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296
            +D   +  +         F   G+  G   FF  T   +T    L  F+ Q+Y     +
Sbjct: 249 NIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYYLSPLRN 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              PE I+ SE  E+   ++ +       K+ IT  K+   ++    A +NA ++ +Q L
Sbjct: 309 GDIPERIVTSEPLEDRLWIQRALSSGLNRKLAITDQKRAPYKQWQAMAALNAAQALSQHL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + + +  + L+   K  ALP+   RIE +D SH +G + V   VV GE G +K  YR+FN
Sbjct: 369 AQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGPIKKDYRRFN 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + V   DD   +R  L RR+ +L + E                 PDV+++DGG GQL
Sbjct: 429 I--SGVTPGDDYGALRQALTRRYVRLKEGE--------------GILPDVLLIDGGMGQL 472

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             A  VL++L V   I + +IAKGP R AG+EK FV  + E + L   +   + IQ++RD
Sbjct: 473 RQAAEVLEELQVSGVI-LTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRD 531

Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT H  RR K+   S L EI GIGP R++ LL+ FG ++ + R+S E +A + G
Sbjct: 532 EAHRFAITAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPG 591

Query: 595 ISKKIACKIYNHFHKNTS 612
           +S+ +A  IY+  H++  
Sbjct: 592 VSETLAKAIYDDCHQHKG 609


>gi|153854576|ref|ZP_01995846.1| hypothetical protein DORLON_01841 [Dorea longicatena DSM 13814]
 gi|149752885|gb|EDM62816.1| hypothetical protein DORLON_01841 [Dorea longicatena DSM 13814]
          Length = 617

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 198/622 (31%), Positives = 330/622 (53%), Gaps = 25/622 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N   +I  M++ I+   +
Sbjct: 9   ELKKLPGKPGVYLMHDEKDAIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHISRFEY 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDK++P+I +T     P +   R     +  
Sbjct: 69  IVTDSELEALVLECNLIKEHRPKYNTMLMDDKTYPFIKVTVNEPFPRVMMARRMKKDKAK 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  +++ + +RSC  S+ +   + RPCL + I +C  PC G IS E
Sbjct: 129 YFGPYTSTGAVKDTIELIRKLYHIRSCNRSLPKDIGKERPCLNYHIHQCYAPCQGYISRE 188

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + E  +FL+G    + +++   M  A+   ++E AI +R+ LA++  I       
Sbjct: 189 EYRKSIDEVVRFLNGNYDPILKELEEKMLDASENLEFEKAIEYRELLASVQKIAQKQKIT 248

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  ++      A +Q  F   G+  G   F+LK     T ++ILS F++QFY 
Sbjct: 249 DTAGDDRDIIAMASEGEDAVVQVFFIRGGRLIGRDHFYLKIAENDTKSEILSSFIKQFYA 308

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  ++L EE E+  ++E     +  +KV++ +PK+G K K++E A  NA      
Sbjct: 309 GTPYIPAELMLPEEIEDQEIIEEWLTTRREHKVRLRIPKKGTKEKLVELAQKNAQMVLKN 368

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+  K   L     R+E YD S+  G  +VG MVV       +N
Sbjct: 369 DKERLKREEGRTIGAVKELEKILGLT-GIIRMEAYDISNTNGFDSVGSMVVYEHGKPKRN 427

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V+  DD A M  VL RRF   ++  ++     + +   F ++PD++++D
Sbjct: 428 DYRKFKIKS--VQGPDDYASMNEVLTRRFEHGLRERQD-----ESETGGFQAFPDLIMMD 480

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG+GQ++ A  VL+KLN    I +  + K          F       L ++        I
Sbjct: 481 GGRGQVNIALEVLEKLN--QHIPVCGMVKDDNHRTRGLYF---NNVELPIDRNSECFRLI 535

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAIT HR+ R K   +S LD+I G+GP R++ L++SF  ++ I  ++ + L
Sbjct: 536 TRIQDEAHRFAITFHRQLRSKGQVHSILDDIPGVGPARRKDLMRSFENIEAIRNATVDDL 595

Query: 590 ASIEGISKKIACKIYNHFHKNT 611
             +  +++K A ++Y  FH++T
Sbjct: 596 KELPSMNEKSAQEVYKFFHQDT 617


>gi|240143365|ref|ZP_04741966.1| excinuclease ABC subunit C [Roseburia intestinalis L1-82]
 gi|257204738|gb|EEV03023.1| excinuclease ABC subunit C [Roseburia intestinalis L1-82]
          Length = 626

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 195/625 (31%), Positives = 327/625 (52%), Gaps = 21/625 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
             +++P+ PGVY M D    ++Y+GKA +L+KR+  Y   ++    +   M+ QI    +
Sbjct: 7   ELKKLPDQPGVYIMHDSHDAIIYIGKAVSLRKRVHQYFQPSHDEGIKKAQMVKQIARFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK   P++N +LRDDK++PYI +T     P +   R     +  
Sbjct: 67  IITDSELEALVLECNLIKEHCPKYNTMLRDDKTYPYIRVTVGEDFPRVLFSRQQKKDKSR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  + + + LR+C   + R   + RPCL + I +C  PC G IS E
Sbjct: 127 YFGPYTSAGAVKDTIELINKLYQLRTCNRVLPRDTGKERPCLNYHIHQCQAPCQGYISRE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y E +  A +FL+G    + + +   MN+A+   ++E AI +R+ L ++  I       
Sbjct: 187 EYRERIDAAVEFLNGNYAPILKSLEEKMNEASENLEFEKAIEYRELLGSVRQIAQKQKIT 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           +      D  +L  +   A +Q  F   G+  G   F+++  +E T +QIL+ FL+QFY+
Sbjct: 247 HTDGEDKDIIALASDDRDAVVQVFFIRDGKLIGRDHFYVRVGTEDTKSQILTTFLKQFYS 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
             P  P  I+L EE E+  +L     ++ G +V I VP++G K K++E A  NA     +
Sbjct: 307 GTPFIPREIMLPEEIEDHEVLAEWLTEKRGARVYIRVPQKGMKEKLVELAQKNAELVLSQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      +  +  R+E +D S+I G   VG M+V  +    ++
Sbjct: 367 DREKIKREEGRTIGAMKEIEHLLGMEGLS-RVEAFDISNINGFETVGSMIVYEKGKPKRS 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469
            YRKF L    +   DD A M  VL RRF+  +  ++ L      +E  SF  +PD++++
Sbjct: 426 DYRKFKLKT--ITGPDDYASMHEVLTRRFTHGMHEKKELAEREMSEEYGSFTRFPDLIMM 483

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++ A  VL +L +   I +  + K              + + + ++        
Sbjct: 484 DGGRGQVNIALKVLDELKI--NIPVCGMVKDDNHRTRG---LYYQNKEIPIDRTSEGFKL 538

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DEAHRFAI  HR  R K   +S LD+I GIG  R++ L++ F +++ I  +S E 
Sbjct: 539 ITRIQDEAHRFAIEYHRSLRSKEQVHSVLDDIPGIGSARRKALMRRFQSLEAIREASEEE 598

Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613
           LA  E ++++ A  +Y+ F ++   
Sbjct: 599 LAKTESMNEQAARAVYSFFREDKHG 623


>gi|255659412|ref|ZP_05404821.1| excinuclease ABC subunit C [Mitsuokella multacida DSM 20544]
 gi|260848374|gb|EEX68381.1| excinuclease ABC subunit C [Mitsuokella multacida DSM 20544]
          Length = 623

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 199/618 (32%), Positives = 313/618 (50%), Gaps = 38/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M D  GR++YVGKA  L+ R++ Y   + NH+ ++  M+S I +   
Sbjct: 8   KLKLLPDSPGVYIMKDANGRIIYVGKAVVLKNRVRQYFQHNKNHSPKVKAMVSHIADFEI 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +EVEAL+LE N+IK+ +P +NI L+DDKS+PY+ +T + + P ++     +     
Sbjct: 68  IMTHSEVEALILECNLIKKHRPHYNISLKDDKSYPYVKVTVQEEYPRVFLTHRVTKDGAR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+  V AV +++  L++ F LR+C         RPCL + IKRC  PC G+++ E Y
Sbjct: 128 YFGPYTDVTAVHQSLKLLRKLFPLRTCRHLQ----ERPCLEYHIKRCLAPCVGKVTEEDY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              +     FL G   +++ ++   M QA     +E+A   RD+L A+  I    + +  
Sbjct: 184 AAMIRAVLLFLEGRTADVERELKVRMEQAAEAFHFETAARLRDQLRAVQKIAEKQNIVTG 243

Query: 241 RMDCFSL--YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             D  ++    ++   C+Q  F   G+  G   F L+   E ++A IL+ FL Q+Y    
Sbjct: 244 AGDQDAIGLARSEIGVCVQVFFIRAGKMIGREHFLLQGSEEESDADILAAFLSQYYHRAA 303

Query: 299 -CPENILLSEEAEETS---LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  ILL     E     L      K+ G KV++ +P++G KR I+  A  NA +    
Sbjct: 304 FVPREILLPMAIAEAEQALLESWLTEKKQGTKVQLLLPQRGTKRDIVAMAESNAAKYLAD 363

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    +      +++      L  +P R+E +D SHI G   V  MVV       K+
Sbjct: 364 EAARIKQADEKTMGAVRELGHYLGLKKMPYRMECFDISHIQGSETVASMVVFEGGLPKKS 423

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR+F +   +    DD   MR V  RR+  L + E                 P+++++D
Sbjct: 424 DYRRFKIQSTEG-KPDDFLSMREVTTRRYVGLPEEE----------------LPNLIVID 466

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLS+A  +++       + ++ +AK  +       F   + E +VL      LY I
Sbjct: 467 GGKGQLSSALEIIRGAGGHKDVPVVGLAKQFEL-----VFKEGESEPVVLPRHSQALYLI 521

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           +R+RDEAHRFAIT HRK R K+   S LD I GIGP R++ L   FGT+  I  +S E L
Sbjct: 522 ERIRDEAHRFAITYHRKLRGKRNLVSVLDHIVGIGPKRRQALRSHFGTIARIREASVEEL 581

Query: 590 ASIEGISKKIACKIYNHF 607
               G+++  A  +Y+ F
Sbjct: 582 QQAPGMNRPAAEAVYHFF 599


>gi|59712233|ref|YP_205009.1| excinuclease ABC subunit C [Vibrio fischeri ES114]
 gi|75353751|sp|Q5E4C5|UVRC_VIBF1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|59480334|gb|AAW86121.1| excinuclease UvrABC, endonuclease subunit [Vibrio fischeri ES114]
          Length = 608

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 199/617 (32%), Positives = 317/617 (51%), Gaps = 31/617 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY  SN  + +   ++S I+ +  TV
Sbjct: 10  LKSVTHQPGVYRMYNAEADVIYVGKAKDLKKRLSSYFRSNVPSEKTKALVSHIHQVDVTV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK+  P++N+LLRDDKS+PYI I+ +HK P +  HR     +G YF
Sbjct: 70  THSETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-QHKHPRISIHRGVKRKKGEYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181
           GP+    AV ++++ +Q+ F +R C DSV+ +R RPCL+ QI RC  PC    +S E+Y 
Sbjct: 129 GPYPDSGAVRESLHLIQKLFPIRQCEDSVYANRHRPCLMHQIGRCLAPCVKGIVSDEEYK 188

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E     + FL G +  + + + + M  A+   ++E A I RD++ A+  +Q       + 
Sbjct: 189 EQTDFIRLFLQGKDRQVIQTLVKQMESASQSLNFEKAAIIRDQIQAMRRVQEQQYVSDDS 248

Query: 242 MDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296
            D            LAC+       G+  G+ +FF K  + +   ++   FL Q+Y +  
Sbjct: 249 GDDLDVLGFAIENGLACVHLLMIRQGKILGSRSFFPKIPANTDKEEVFLSFLTQYYLNHT 308

Query: 297 --KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             +  P  ++ S E     L            +    PK  + R + + A  NA  + T 
Sbjct: 309 QGRTIPNRVVTSFEFNSEDLERALTELSGRKVIFQLNPKGIKGRYL-KLADTNALTALTS 367

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           K + +++     K   +   L    +R+E +D SH MG   V   VV  + G VK++YR+
Sbjct: 368 KSNHKLTMYQRFKQLEEALVLS-SIQRMECFDISHTMGEKTVASCVVFNQEGPVKSEYRR 426

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +N+    +   DD A M  VLERR+S+ +  ++                PD++ +DGGKG
Sbjct: 427 YNI--AGITGGDDYAAMAQVLERRYSKQLDIDK---------------IPDIIFIDGGKG 469

Query: 475 QLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           QL+ A  V+ K   +   +  ++ IAKG  R  G+E      GE   +    P L+ IQ 
Sbjct: 470 QLNRAYEVISKHWEDWPKQPLLLGIAKGVTRKHGLETLVKISGEEFSMPSDSPALHLIQH 529

Query: 533 LRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H  AI  HR +R K    S L  I+G+GP R++ LLQ  G ++ +  +S E +A 
Sbjct: 530 IRDESHNHAIGGHRAQRAKVRKTSTLQNIDGVGPKRRQALLQYLGGLQELKSASVEEIAK 589

Query: 592 IEGISKKIACKIYNHFH 608
           + GIS  +A KI++   
Sbjct: 590 VPGISHSLAEKIHDALK 606


>gi|167761265|ref|ZP_02433392.1| hypothetical protein CLOSCI_03670 [Clostridium scindens ATCC 35704]
 gi|167660931|gb|EDS05061.1| hypothetical protein CLOSCI_03670 [Clostridium scindens ATCC 35704]
          Length = 612

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 202/619 (32%), Positives = 329/619 (53%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N   +I  M++ I    +
Sbjct: 7   ELKKLPGKPGVYIMHDEKDNIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHIRRFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDK++P+I +T +   P +   R     +  
Sbjct: 67  IVTDSELEALVLECNLIKEYRPKYNTMLMDDKAYPFIKVTVEEPFPRVMLARKMVKDKSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  +++ + +RSC   + R   + RPCL + I +C  PC G IS E
Sbjct: 127 YFGPYTSAGAVKDTIELIRKLYQIRSCNRKLPRDIGKERPCLNYHIHQCKAPCQGYISQE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y E V+E   FL+G    + +++   M +A+   ++E AI +R+ L ++  I       
Sbjct: 187 EYRESVNEVIHFLNGNYDIILKELEERMEEASEALEFEKAIEYRELLTSVQKIAQKQKIT 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++   +  A +Q  F   G+  G   F+LK     T ++ILS F++QFY 
Sbjct: 247 DTAGEDRDILAVAVEEEEAVVQVFFIRGGRLIGRDHFYLKIAKGETQSEILSSFIKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  ++L EE E+ +++E    K+ G++V++ VPK+G K K++E A  NA      
Sbjct: 307 GTPYIPPRLMLPEEIEDLAVIEEWLTKRRGHRVRLIVPKKGTKEKLVELAKKNAQLVLST 366

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+  K   L  I  R+E YD S+  G  +VG MVV  +    +N
Sbjct: 367 DKERLKREEGRTIGAVKELEKLLGLTGIV-RMEAYDISNTNGFESVGSMVVYEKGRPKRN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V+  DD A M  VL RRF   ++ +E       K+   F  +PD++++D
Sbjct: 426 DYRKFKIKG--VQGADDYASMEEVLTRRFEHGLREKEE-----GKEMGGFTLFPDLILMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL KL +   I +  + K              + E + ++        I
Sbjct: 479 GGKGQVNVALRVLDKLRL--NIPVCGMVKDDSHRTRG---LYYQNEEISIDKDSESFKLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAIT HR+ R +   +S LD+I G+GP R++ L++ F  ++ I  ++ E L
Sbjct: 534 TRIQDEAHRFAITFHRQLRSQGQVHSILDDIPGVGPARRKDLMRHFENIEAIKNATVEQL 593

Query: 590 ASIEGISKKIACKIYNHFH 608
             +  +++K A  +YN FH
Sbjct: 594 KELPSMNEKSARDVYNFFH 612


>gi|238764986|ref|ZP_04625923.1| UvrABC system protein C [Yersinia kristensenii ATCC 33638]
 gi|238696755|gb|EEP89535.1| UvrABC system protein C [Yersinia kristensenii ATCC 33638]
          Length = 588

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 212/606 (34%), Positives = 330/606 (54%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D AG V+YVGKA +L+KR+ SY  +   + +   ++  I  I  TVT TE EALLLE 
Sbjct: 1   MYDKAGTVIYVGKAKDLKKRLTSYFRAQVASRKTETLVKNIAQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P I ++   K P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPLIFLS-ADKHPRLAIHRGAKHEKGEYFGPFPNSYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    ++ E+Y   V   + FLSG
Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVTGLVTEEEYQRQVDYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251
            +  +  ++   M  A+    +E A   RD++ A+  +        +    D   +  + 
Sbjct: 180 KDQQVLTQLISRMEDASRLLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307
            LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
             EE  LL  S  +  G K++I    +G++ + ++ A  NA  +   +LS + +    +K
Sbjct: 300 TLEEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTRLSQQSTIHQRMK 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           +  K   L     R+E +D SH MG   V   VV   NG V+++YR++N+  + +   DD
Sbjct: 360 ELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL+RR+ + + +++                PDV+ +DGGKGQLS A  V   LN
Sbjct: 417 YAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQLSQAFDVFASLN 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ +RD++H  AIT
Sbjct: 462 VSWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A +  IS+ +A K
Sbjct: 522 GHRQRRSKVKNTSALEMIEGVGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581

Query: 603 IYNHFH 608
           IYN   
Sbjct: 582 IYNALK 587


>gi|331090011|ref|ZP_08338901.1| UvrABC system protein C [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330402925|gb|EGG82491.1| UvrABC system protein C [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 617

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 199/619 (32%), Positives = 318/619 (51%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N   +I  M++ I    +
Sbjct: 11  ELKKLPARPGVYLMHDERDEIIYVGKAISLKNRVRQYFQSSRNKGVKIEQMVTHIRRFEY 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK   P++N +L DDK++P+I +T     P +   R     +  
Sbjct: 71  IVTDSELEALVLECNLIKEHHPKYNTMLMDDKTYPFIKVTVNEPFPRVLLARKMLKDKAK 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV  TI+ + + + +RSC  ++ +   + RPCL + IK+C  PC G IS E
Sbjct: 131 YFGPYTSAQAVRDTIDLIHKLYHVRSCNRNLPKDIGKERPCLNYHIKQCDAPCQGYISQE 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
            Y   + E  KFL+G    + +++   MN A+   ++E AI +R+ + ++  I       
Sbjct: 191 DYGAAIVEVLKFLNGNYDVILKELEGKMNTASENLEFERAIEYRELINSVKKIAQKQKIT 250

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           DS     D  +       A +Q  F   G+  G   F+L+  S    + IL  F++Q+Y 
Sbjct: 251 DSSGEDRDILAAASEGEDAVVQVFFIRGGRLIGRDHFYLRISSGEKTSGILDSFIKQYYA 310

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  +++ EE ++  L+E     + G KV + VPK+G K K++E A  NA      
Sbjct: 311 GTPYIPGELMIQEEIKDRELIETWLTSKRGQKVTVKVPKKGTKEKLVELASDNAKLVLSK 370

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      +  I  R+E YD S+  G  +VG MVV       +N
Sbjct: 371 DKERMRREEGRTIGAVKEIEALLGISQIR-RMEAYDISNTNGFESVGSMVVYERGKPKRN 429

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    ++  DD   MR VL RRF+  +K  E        +   F  +PD++++D
Sbjct: 430 DYRKFKIKG--IQGADDYGSMREVLTRRFTHGLKEREE-----NGELGKFTVFPDLILMD 482

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL+ LN+   I +  + K          F   + E + +         I
Sbjct: 483 GGKGQVNVALQVLEDLNL--NIPVCGMVKDDFHRTRGLYF---QNEEISIEKSSEAFRLI 537

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR+ R K   +S LD+I GIGP R++ L++ + ++  I  +S E L
Sbjct: 538 TRIQDEAHRFAIEYHRQLRGKGQVHSILDDIEGIGPARRKALMRHYLSLDAIKAASIEEL 597

Query: 590 ASIEGISKKIACKIYNHFH 608
           A +  +++K A  +YN FH
Sbjct: 598 AKLPSMNEKAAQAVYNFFH 616


>gi|317501240|ref|ZP_07959445.1| excinuclease ABC subunit C [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897416|gb|EFV19482.1| excinuclease ABC subunit C [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 617

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 199/619 (32%), Positives = 318/619 (51%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N   +I  M++ I    +
Sbjct: 11  ELKKLPARPGVYLMHDERDEIIYVGKAISLKNRVRQYFQSSRNKGVKIEQMVTHIRRFEY 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK   P++N +L DDK++P+I +T     P +   R     +  
Sbjct: 71  IVTDSELEALVLECNLIKEHHPKYNTMLMDDKTYPFIKVTVNEPFPRVLLARKMLKDKAK 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV  TI+ + + + +RSC  ++ +   + RPCL + IK+C  PC G IS E
Sbjct: 131 YFGPYTSAQAVRDTIDLIHKLYHVRSCNRNLPKDIGKERPCLNYHIKQCDAPCQGYISQE 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
            Y   + E  KFL+G    + +++   MN A+   ++E AI +R+ + ++  I       
Sbjct: 191 DYGAAIAEVLKFLNGNYDVILKELEEKMNTASENLEFERAIEYRELINSVKKIAQKQKIT 250

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           DS     D  +       A +Q  F   G+  G   F+L+  S    + IL  F++Q+Y 
Sbjct: 251 DSRGEDRDILAAASEGEDAVVQVFFIRGGRLIGRDHFYLRISSGEKTSGILDSFIKQYYA 310

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  +++ EE ++  L+E     + G KV + VPK+G K K++E A  NA      
Sbjct: 311 GTPYIPGELMIQEEIKDRELIETWLTSKRGQKVTVKVPKKGTKEKLVELASDNAKLVLSK 370

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      +  I  R+E YD S+  G  +VG MVV       +N
Sbjct: 371 DKERMRREEGRTIGAVKEIEALLGISQIR-RMEAYDISNTNGFESVGSMVVYERGKPKRN 429

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    ++  DD   MR VL RRF+  +K  E        +   F  +PD++++D
Sbjct: 430 DYRKFKIKG--IQGADDYGSMREVLTRRFTHGLKEREE-----NGELGKFTVFPDLILMD 482

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL+ LN+   I +  + K          F   + E + +         I
Sbjct: 483 GGKGQVNVALQVLEDLNL--NIPVCGMVKDDFHRTRGLYF---QNEEISIEKSSEAFRLI 537

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR+ R K   +S LD+I GIGP R++ L++ + ++  I  +S E L
Sbjct: 538 TRIQDEAHRFAIEYHRQLRGKGQVHSILDDIEGIGPARRKALMRHYLSLDAIKAASIEEL 597

Query: 590 ASIEGISKKIACKIYNHFH 608
           A +  +++K A  +YN FH
Sbjct: 598 AKLPSMNEKAAQAVYNFFH 616


>gi|86740338|ref|YP_480738.1| excinuclease ABC subunit C [Frankia sp. CcI3]
 gi|119367649|sp|Q2JCI3|UVRC_FRASC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|86567200|gb|ABD11009.1| Excinuclease ABC subunit C [Frankia sp. CcI3]
          Length = 705

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 197/675 (29%), Positives = 305/675 (45%), Gaps = 71/675 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRVLYVGKA NL+ R+ +Y    +    R  HM+S  +++ +TV 
Sbjct: 13  SIPETPGVYRFRDEHGRVLYVGKAKNLRARLANYFAELHTLHPRTQHMVSSASSVDWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK+  PRFN+  RDDKS+P + +T   + P L   R        YFG
Sbjct: 73  STEVEALQLEYTWIKQFDPRFNVRYRDDKSYPSLAVTLHEEFPRLQVMRGPKRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F  R+C+  VF+      RPCLL  I RCS PC G + +  +
Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSGGVFKRAAQVGRPCLLGYIDRCSAPCVGRVDAATH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E V +   F+SG       ++ R M QA   ++YE A   RD + AL         +  
Sbjct: 193 REIVEDFCDFMSGQTGRYLRRLEREMQQAAQAQEYERAARLRDDIGALRRAVEKQAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +   ++  A +   +   G+ RG   + +    E T A ++  FL Q Y D 
Sbjct: 253 DGTDADVIAFAEDELEAAVAVFYVRGGRVRGQRGWVVDKLDEVTTADLVEQFLTQEYLDG 312

Query: 298 P-----------------------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334
                                    P  IL+     +   +        G +V++ VP++
Sbjct: 313 TGAASTGTAGSTVPTTTAGSQGEGIPREILVPALPPDVEAVTELLGAARGSRVEVRVPRR 372

Query: 335 GEKRKIIEQALINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHI 390
           G+KR ++E    NA ++     +   S        L +  +   LP  P RIE +D S+ 
Sbjct: 373 GDKRTLLETVERNAKQAFALHRTKRASDLTARSRALAELQEALELPDAPLRIECFDVSNT 432

Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHP-------NDVKTQDDCAMMRMVLERRFSQLI 443
            G + V  MVV  +    K++YR+F +               DD A M   + RRFS+ +
Sbjct: 433 QGTNVVASMVVFEDGLPRKSEYRRFAIRGIAGREGAGREGAGDDVASMYETIHRRFSRYL 492

Query: 444 KNEENLN---------------------FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
                +                           +   F   P++V++DGG  Q++AA   
Sbjct: 493 AERSRIADIADIAELGDIAGAPGAAQPIDPGTGRPRRFAYPPNLVVVDGGAPQVAAAARA 552

Query: 483 LKKLNVE---NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           L +L ++     + +  +AK  +     E +     + ++L      LY +QR+RDEAHR
Sbjct: 553 LDELGIDAGPGGVALCGLAKRLE-----EVWLPDTADPVILPRTSEALYLLQRVRDEAHR 607

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI  HR++R  A   S LDE+ G+G  R++ LL+ FG+V  I  +S E +A + GI  +
Sbjct: 608 FAIAYHRQKRSTAMVASALDEVPGLGDTRRKALLRHFGSVAKIRAASAEQIAQVSGIGPR 667

Query: 599 IACKIYNHFHKNTSH 613
            A  I     ++   
Sbjct: 668 TAAAIVTALARSAPG 682


>gi|168212741|ref|ZP_02638366.1| excinuclease ABC, C subunit [Clostridium perfringens CPE str.
           F4969]
 gi|170715691|gb|EDT27873.1| excinuclease ABC, C subunit [Clostridium perfringens CPE str.
           F4969]
          Length = 620

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 195/619 (31%), Positives = 316/619 (51%), Gaps = 20/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+  PR+NI L+DDK +P+I IT     P +Y  R+ +     
Sbjct: 67  IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV + +  +++ F LR+C  ++      TR CL + I  C  PC G IS  
Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y E + E    L+G + ++ +     M +A  + ++E A   RDR+ A+  I       
Sbjct: 187 EYWEMIDEIINILNGTDTSIIKNFKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D   LY ++   C Q  F   G+  G   F ++   +    +++S F+  FY 
Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENIGDDPVEEVISSFIASFYG 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
                P+ I + EE E+  L+E    ++ G KV I VPK+G+K+ +++    NA     +
Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              + +  +  ++  L +      L  +P RIE YD S+I G  +VG MVV        +
Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPARIEAYDISNIQGVDSVGTMVVFENGKAKNS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YR+F +    VK  +D   MR +L RRFS  ++   +    + +  +  F  +PD++++
Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFPDLIMM 484

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ A  VLK   +E  I +  + K  K       F     E +++     ++  
Sbjct: 485 DGGKGQVNIALEVLKDFGIE--IPVCGLVKDHKHRTRGIIF---NNEEILIRRGSGLMNL 539

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DE HR+AIT HR  R K+  +S L++I  IG  R+R LL  FG++  I ++S E 
Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599

Query: 589 LASIEGISKKIACKIYNHF 607
           L    GI K+ A  I  +F
Sbjct: 600 LLDTPGIDKRAAESIKQYF 618


>gi|307266005|ref|ZP_07547552.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918967|gb|EFN49194.1| excinuclease ABC, C subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 615

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 198/618 (32%), Positives = 328/618 (53%), Gaps = 18/618 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +PE PGVY M D +G+++YVGKA  L+ R++ Y     N   ++  M+S + +  +
Sbjct: 6   KLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKENQLPKVKVMLSHVEDFEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI  T   + P +   R        
Sbjct: 66  IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKATVNEEYPRIMFTRRIEPDGAK 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP++S  AV +TI  +++ F +R+C  ++ +   + R CL + I  CS PCT +I+ E
Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPIRTCNRNIEKDMGKVRECLYYHIGLCSAPCTNKINKE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V +A  FL G    L +K+  +M +A  +  +E A   RD++ A+         +
Sbjct: 186 DYRKLVDQAVLFLDGKRDWLIQKLKEDMQKAAEELRFEEAARIRDQIFAIERTSEKQKVV 245

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  S+    +++CIQ  F   G+  G   +++K        +I+S F++QFY 
Sbjct: 246 SVGEDEQDIISMARGADISCIQVFFVRDGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352
             P  P+ I++  E +E  LL     ++ G KV IT+P +G+K+++++    NA  +   
Sbjct: 306 GAPYIPKEIIIDVELDERELLSEWLSQKRGNKVFITIPMRGKKKELVDMVYQNALEALKS 365

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              +  +IS    + + +    L +   RIE YD S+  G   VG MVV  +    K+QY
Sbjct: 366 DISIREKISKDQAVLELSNLVGLDYAK-RIEAYDISNTRGQDNVGSMVVFADGKPKKSQY 424

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471
           RKFN+    V+ QDD   MR V+ERRF   I+ +E +     ++    F   PD++++DG
Sbjct: 425 RKFNIK--YVEGQDDYESMREVIERRFLHAIEEKELIEKGELEENKAKFAEMPDLILIDG 482

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G G ++A   VL  L +   I +  + K  K         V     + + M       I 
Sbjct: 483 GIGHVNAVLQVLDGLGIA--IPVYGMVKDSKHRTRG---LVSPQGEIDIPMTTKAFRLIA 537

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++++EAHRFAIT H+K++ K   S L  I GIG  R + L  +F +++ I  +S E L  
Sbjct: 538 QIQEEAHRFAITFHKKKQSKRFKSELFNIPGIGEKRAKALYDAFKSIEEIRSASLEDLKK 597

Query: 592 IEGISKKIACKIYNHFHK 609
           ++G+++K A  +Y +F K
Sbjct: 598 VKGMNEKAAQAVYEYFRK 615


>gi|18309334|ref|NP_561268.1| excinuclease ABC subunit C [Clostridium perfringens str. 13]
 gi|21363051|sp|Q8XNI1|UVRC_CLOPE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|18144010|dbj|BAB80058.1| excinuclease ABC subunit C [Clostridium perfringens str. 13]
          Length = 620

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 195/619 (31%), Positives = 316/619 (51%), Gaps = 20/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKILPDKPGVYIMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSEKVRAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+  PR+NI L+DDK +P+I IT     P +Y  R+ +     
Sbjct: 67  IVTDSEMEALILECNLIKKYSPRYNIALKDDKFYPFIKITTNEDFPRVYVTRNFAKDGNR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV + +  +++ F LR+C  ++      TR CL + I  C  PC G IS  
Sbjct: 127 YFGPYTNGTAVYEVMGLIKKLFPLRTCKKAIVEGGEPTRACLNYHINLCKAPCAGYISKA 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y E + E    L+G + ++ +K+   M +A  + ++E A   RDR+ A+  I       
Sbjct: 187 EYWEMIDEIINILNGTDTSIIKKLKLEMEKAAEELEFEKAAKIRDRILAIELISEKQKMF 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D   LY ++   C Q  F   G+  G   F ++   +    +++S F+  FY 
Sbjct: 247 TVKEGDEDFIDLYTDEKDGCAQVFFVREGKVTGREHFMIENIGDDPVKEVISSFIASFYG 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
                P+ I + EE E+  L+E    ++ G KV I VPK+G+K+ +++    NA     +
Sbjct: 307 GTAQIPKTIYVPEEIEDQELIEKFLTEKRGSKVWIKVPKKGDKKNLLDMVRNNAKIMLDQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              + +  +  ++  L +      L  +P RIE YD S+I G  +VG MVV        +
Sbjct: 367 FKEKMVEEKELNKSALTELADVLGLDSLPVRIEAYDISNIQGVDSVGTMVVFENGKAKNS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YR+F +    VK  +D   MR +L RRFS  ++   +    + +     F  +PD++++
Sbjct: 427 DYRRFKIKS--VKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSNGKFCIFPDLIMM 484

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ A  VLK   +E  I +  + K  K             E +++     ++  
Sbjct: 485 DGGKGQVNIALEVLKGFGIE--IPVCGLVKDHKHRTRGIIL---NNEEILIRRGSGLMNL 539

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DE HR+AIT HR  R K+  +S L++I  IG  R+R LL  FG++  I ++S E 
Sbjct: 540 ITRVQDEVHRYAITYHRSLRDKRTLHSILEDIPRIGEKRRRNLLMKFGSIDNIKKASMEE 599

Query: 589 LASIEGISKKIACKIYNHF 607
           L    GI K+ A  I  +F
Sbjct: 600 LLDTPGIDKRAAESIKQYF 618


>gi|256394749|ref|YP_003116313.1| excinuclease ABC, C subunit [Catenulispora acidiphila DSM 44928]
 gi|256360975|gb|ACU74472.1| excinuclease ABC, C subunit [Catenulispora acidiphila DSM 44928]
          Length = 663

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 190/633 (30%), Positives = 310/633 (48%), Gaps = 31/633 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              ++P  PGVY+  D   RV+YVGKA NL+ R+ SY     N   R   M++   ++ +
Sbjct: 10  KPGEIPTSPGVYKFRDPHSRVIYVGKAKNLRSRLTSYFQDLANLHVRTQTMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T   TEVEAL LE   IK+ +PRFN+  RDDKS+P + +T   + P     R        
Sbjct: 70  TTVATEVEALQLEYTWIKQFEPRFNVKYRDDKSYPSLAVTVGEEFPRAQVMRGPKRPGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP++   A+ +T++SL R F +R+C+  VF+      RPCLL  I +CS PC G +S+
Sbjct: 130 YFGPYSHAWAIRETLDSLLRVFPIRTCSSGVFKRAAQTGRPCLLGYIGKCSAPCVGRVSA 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E V +   F++G        +   M +A  + ++E A   RD L AL      N  
Sbjct: 190 EEHREIVDDFVSFMAGRTDRYIRGLEEEMKEAAKELEFEKAARLRDDLQALKQSLEKNAV 249

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  +L  +   A +Q      G+ RG   + +    +   A ++ +F++Q Y
Sbjct: 250 VLGDGTDADVIALSEDPLEAAVQVFHVRGGRIRGQRGWVVDRVEDVDTAGLVEHFMQQLY 309

Query: 295 TD---------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
                      +  P  IL+ E       +      + G KV++ +PK+G+K  ++E   
Sbjct: 310 GSEQGEPGIDTETVPREILVPELPGSVEAITEWLSARRGAKVEVRIPKRGDKAALMETVA 369

Query: 346 INAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401
            NA ++     +   S        L++      +   P RIE YD SH+ G + V  MVV
Sbjct: 370 QNAKQALALHKTRRASDLTTRSVALQELADAIGMDQAPLRIECYDISHLQGTNVVASMVV 429

Query: 402 VGENGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIK--NEENLNFHPKKQE 457
             +    K++YR+F +  +D      DD   M  V+ RRF   +K   EE L        
Sbjct: 430 FEDGLPRKSEYRRFTIKGSDENGATNDDVRNMHEVITRRFKAFLKEQEEEKLIDATIGDR 489

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
             F   P +V++DGG+ Q++AA   L  L + + +T++ +AK  +     E +   + + 
Sbjct: 490 KKFSYPPQLVVVDGGQPQVAAAARALADLEISD-VTLVGLAKRLE-----EVWLPDEDDP 543

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFG 576
           ++L      LY +QR+RDEAHRF I  HR++R K+   S LD++ G+G +R++ LL  FG
Sbjct: 544 VLLPRSSEGLYMLQRVRDEAHRFGIAFHRQKRSKSMVASALDDVPGLGEVRRKALLAHFG 603

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           T++ +  +    +A + GI    A +I++   +
Sbjct: 604 TLRKLRAAQVAEIAEVPGIGPATARQIHSALAE 636


>gi|238752715|ref|ZP_04614185.1| UvrABC system protein C [Yersinia rohdei ATCC 43380]
 gi|238709046|gb|EEQ01294.1| UvrABC system protein C [Yersinia rohdei ATCC 43380]
          Length = 588

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 214/606 (35%), Positives = 332/606 (54%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D AG V+YVGKA +L+KR+ SY  ++  + +   ++  I  I  TVT TE EALLLE 
Sbjct: 1   MYDKAGTVIYVGKAKDLKKRLTSYFRAHVASRKTETLVKNIAQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P I ++   K P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPLIFLS-ADKHPRLAIHRGAKHEKGEYFGPFPNSYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    IS E+Y   V   + FLSG
Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVAGLISDEEYQRQVDYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251
            +  +  ++   M +A+    +E A   RD++ A+  +        +    D   +  + 
Sbjct: 180 KDQQVLTQLISRMEEASQLLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307
            LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
             EE  LL  S  +  G K++I    +G++ + ++ A  NA  +   +LS + +    +K
Sbjct: 300 ILEEKELLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTRLSQQSTIHQRMK 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           +  K   L     R+E +D SH MG   V   VV   NG V+++YR++N+  + +   DD
Sbjct: 360 ELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL+RR+ + + +++                PDV+ +DGGKGQLS A  V   LN
Sbjct: 417 YAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQLSQAFDVFASLN 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ +RD++H  AIT
Sbjct: 462 VPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A +  IS+ +A K
Sbjct: 522 GHRQRRSKVKNTSALEMIEGVGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581

Query: 603 IYNHFH 608
           IYN   
Sbjct: 582 IYNALK 587


>gi|326389756|ref|ZP_08211321.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325994238|gb|EGD52665.1| excinuclease ABC, C subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 615

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 200/618 (32%), Positives = 330/618 (53%), Gaps = 18/618 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +PE PGVY M D +G+++YVGKA  L+ R++ Y     N   ++  M+S + +  +
Sbjct: 6   KLKLLPEKPGVYIMKDKSGKIIYVGKAVVLKNRVRQYFQNKENQLPKVKVMLSHVEDFEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ KP++NILL+DDK++PYI +T   + P +   R        
Sbjct: 66  IVTDTELEALMLECNLIKKYKPKYNILLKDDKNYPYIKVTVNEEYPRIMFTRRIEPDGAK 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP++S  AV +TI  +++ F +R+C  ++ +   + R CL + I  CS PCT +I+ E
Sbjct: 126 YFGPYSSAFAVRETIKLVRKMFPVRTCNRNIEKDIGKVRECLYYHIGLCSAPCTNKINKE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V +A  FL G    L +K+  +M +A  +  +E A   RD++ A+         +
Sbjct: 186 DYRKLVDQAVLFLDGKRDWLIQKLKEDMQKAAEELRFEEAARIRDQIFAIERTSEKQKVV 245

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  S+  + +++CIQ  F   G+  G   +++K        +I+S F++QFY 
Sbjct: 246 SVGEDEQDIISMARSVDISCIQVFFVRHGKLSGREHYYMKNTEGMERGEIISSFIKQFYE 305

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352
             P  P+ I+   E +E  LL     ++ G KV IT+P +G+K+++++    NA  +  +
Sbjct: 306 GAPYIPKEIITDVELDERELLSEWLSQKRGNKVFITIPVRGKKKELVDMVYQNALEALKN 365

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              +  EIS    + + +    L +   RIE YD S+  G   VG MVV  +    K+QY
Sbjct: 366 DISIREEISKDQAVLELSNLVGLDYAK-RIEAYDISNTRGQDNVGSMVVFVDGKPKKSQY 424

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471
           RKFN+    V+ QDD   MR V+ERRF   I+ +E +     K++   F   PD++ +DG
Sbjct: 425 RKFNIK--YVEGQDDYESMREVIERRFLHGIQEKELIEKGELKEDKAKFAEMPDLIFVDG 482

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G G ++A   VL    +   I +  + K  K         V     + + M       + 
Sbjct: 483 GIGHVNAVMQVLSGFGI--FIPVYGMVKDSKHRTRG---LVSPQGEIDIPMTTKAFRLVA 537

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++++EAHRFAIT H++++ K   S L  I GIG  R + L  +F +++ I R+S E L  
Sbjct: 538 QIQEEAHRFAITFHKEKQSKRFKSELLNIPGIGEKRAKALYDAFKSIEEIKRASVEDLKK 597

Query: 592 IEGISKKIACKIYNHFHK 609
           +EG+++K A  +Y +F K
Sbjct: 598 VEGMNEKAAQAVYEYFRK 615


>gi|145595626|ref|YP_001159923.1| excinuclease ABC subunit C [Salinispora tropica CNB-440]
 gi|189038086|sp|A4X9H1|UVRC_SALTO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|145304963|gb|ABP55545.1| Excinuclease ABC subunit C [Salinispora tropica CNB-440]
          Length = 665

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 192/663 (28%), Positives = 304/663 (45%), Gaps = 61/663 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA NL+ R+ SY     N   R   M+    ++ +   
Sbjct: 13  TIPESPGVYRFRDGTGRVIYVGKARNLRNRLNSYFADPVNLHQRTRQMVFTAESVDWISV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL  E   IK+  PRFN+  RDDKS+PY+ +T   + P L   R +      YFG
Sbjct: 73  ATEVEALQQEFTEIKQYDPRFNVRYRDDKSYPYLAVTVSEEFPRLQVMRGAKRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +C+ PC G +S+E++
Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRAGQVGRPCLLGYIDKCAAPCVGSVSAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V     F++G    +  ++ R M  A+ + ++E A   RD LAAL         ++ 
Sbjct: 193 RAIVEGFCDFMAGRTDLMVRRLEREMADASAELEFERAARLRDDLAALRRAMEKQTVVFG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  +   +   A +Q      G+ RG   + ++   E T   ++ +F  Q Y   
Sbjct: 253 DGTDADVVAFADDPLEAAVQVFHVRDGRIRGQRGWVVEKTEELTIGDLVHHFCTQVYGGE 312

Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +   P  +L+ E   +   L        G +V + VP++G+KR ++E    NA  +  
Sbjct: 313 QGEADVPRELLVPELPADVEALADWLSDHRGSRVTLRVPQRGDKRALLETVARNATDALA 372

Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +          +    L +  +   L   P RIE YD S I G   V  MVV  +    K
Sbjct: 373 RHKLKRAGDLTTRSKALDEIAETLGLQTAPLRIECYDISQIQGTDVVASMVVFEDGLPRK 432

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN--------------------- 448
           ++YR+F +        DD + M  VL RRF++ +                          
Sbjct: 433 SEYRRFIIRG----ATDDLSAMSEVLRRRFARYLDARAETGEAGVESAGDPATPAGPAST 488

Query: 449 ------------LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496
                       L      +   F   P +V++DGG  Q++AA   L +L V++ + +  
Sbjct: 489 GPGVPDEPRVGTLVDPTTGRPRKFAYPPQLVVVDGGAPQVAAAAQALAELGVDD-VALCG 547

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYS 555
           +AK  +     E +        +L      LY +QR+RDEAHRFAIT HR+RR  +   S
Sbjct: 548 LAKRLE-----EVWLPDDDFPAILPRTSEGLYLLQRVRDEAHRFAITFHRQRRSRRMTES 602

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT--SH 613
            LD + G+G +R++ LL+ FG++K +S +S E +  + G+ ++ A  I      +T    
Sbjct: 603 ALDRVPGLGEVRRKALLRHFGSLKRLSAASVEEITEVPGVGQRTAEAILAALGDSTQPDE 662

Query: 614 TPT 616
             T
Sbjct: 663 PRT 665


>gi|256832484|ref|YP_003161211.1| excinuclease ABC, C subunit [Jonesia denitrificans DSM 20603]
 gi|256686015|gb|ACV08908.1| excinuclease ABC, C subunit [Jonesia denitrificans DSM 20603]
          Length = 647

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 188/640 (29%), Positives = 300/640 (46%), Gaps = 39/640 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y  S +    R   M++    + +T+ 
Sbjct: 13  DIPTAPGVYRFRDDQGRVIYVGKAKNLRARLSNYFQSLSALHPRTQAMVTSAAGVEWTIV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+PY+ ++   ++P  +  R +      YFG
Sbjct: 73  STEVEALALEYTWIKEYDPRFNVKYRDDKSYPYLAVSMSQQVPRAFVTRSAKKPGDRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T++ L R F +R+C   V+   +   RPCLL  I +CS PCTG IS + +
Sbjct: 133 PFGHAWAIRDTLDQLLRVFPVRTCTQGVYNRAQRSGRPCLLGYIDKCSAPCTGNISQDDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +   +   F++G        + + M  A+   D+E+A   RD L AL      N  +  
Sbjct: 193 RQLAEDLCDFMAGHTGRFISDVKQRMMDASQALDFETAARLRDDLRALERALEKNAVVLS 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D F++  ++  A +Q      G+ RG   +  +      + + + + L+Q Y   
Sbjct: 253 DATDADVFAVASDELEAAVQVFHVRGGRIRGQRGWIAEKVEALRDDEFIEHLLQQVYGVH 312

Query: 295 --------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
                     +  P  +L+     ++  +        G KV + +P++GEK ++      
Sbjct: 313 DDSVTPGHAAQAIPRQVLVPVLPADSETMTAWLSTLRGSKVAVRIPQRGEKAQLAATVHA 372

Query: 347 NAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402
           NA ++     S       +    L++      L   P RIE YD SH  G      MVV 
Sbjct: 373 NAEQALRLHKSRRAGDLTTRSQALRELHDALELSEAPLRIECYDVSHNQGTFQTASMVVF 432

Query: 403 GENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNF---------H 452
            +    K+ YR F++  N+    +DD   M  V+ RRF + + ++E              
Sbjct: 433 EDGLPKKSAYRLFHIKGNEGDGARDDTEAMYEVISRRFKRHLIHKETRQTVTTGEVDAHD 492

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
              +   F   P +V++DGG  Q++AA   L  L + + + +  +AK  +     E +  
Sbjct: 493 NSSESPVFAYEPSLVVVDGGAPQVAAAVRALTDLGITD-VAVCGLAKRLE-----EIWIP 546

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLL 571
                ++L  +   LY +Q LRDEAHRFAI  HRKRR +    S LD I G+GP R + L
Sbjct: 547 HDEFPVILERQSAGLYLLQHLRDEAHRFAIKAHRKRRSQGMTVSQLDGIPGLGPTRVKAL 606

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           L  FG+VK I  +S + +A+++GI +  A ++    H   
Sbjct: 607 LNHFGSVKKIKEASVDDIAAVKGIGRTTATQVVEFLHPRA 646


>gi|218438532|ref|YP_002376861.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7424]
 gi|218171260|gb|ACK69993.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7424]
          Length = 638

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 197/630 (31%), Positives = 315/630 (50%), Gaps = 30/630 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61
            +++P  PGVY M D  G +LY+GK+  L+ R++SY  +++  + R+  M+ Q+ +I F 
Sbjct: 15  LKEIPPEPGVYFMRDKNGDILYIGKSKKLRSRVRSYFRNSHVLSPRLALMVQQVADIEFI 74

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119
           VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R       + 
Sbjct: 75  VTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFITRKRRLDNEKD 134

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+     +  T+  ++R F LR     +F  + RPCL + I RC G C   IS   
Sbjct: 135 RYYGPYVDTRLLRSTLQMIKRIFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQLLISPAD 192

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +      G    L   ++  M QA  + ++E A   RD++ AL  + +      
Sbjct: 193 YHKTIQQVAMIFQGRTGELINTLSSQMEQAANQLNFEKAATIRDQIKALESLTSDQKVAL 252

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES------TNAQILSYF 289
                  D  +L  + +  CIQ      G+  G   FF+   ++           IL   
Sbjct: 253 PDDTISRDAIALATDGHHCCIQLFQIRAGRLVGRLGFFVDIQNQENNITQTDPGAILQRV 312

Query: 290 LRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
           L + Y        P  ILL     +   L     ++ G KV + VP++  K ++IE    
Sbjct: 313 LEEHYWMADPVEIPSEILLQYPLSDEGTLGDWLSERKGRKVNLIVPQRQSKAELIEMVER 372

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA     +       +   ++D      L  +PKRIE YD SHI G +AV   VV  +  
Sbjct: 373 NAKYELERTQRFADRNLAAMEDLAAIVDLEELPKRIEGYDISHIQGSNAVASQVVFIDGV 432

Query: 407 FVKNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHP----KKQEYSF 460
             K  YR + +   +VK    DD A +  V+ RRF +  +N       P    +    S 
Sbjct: 433 PAKQHYRHYKIKNPEVKIGHSDDFASLAEVIRRRFRKYNRNSLTSLPTPLLQGEGSLSSE 492

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
              PD++++DGGKGQLSA   VL+++N+ + + ++S+AK  +     E F   + E L  
Sbjct: 493 SDLPDLIMIDGGKGQLSAVVEVLQEMNLLSELRVVSLAKQRE-----EIFLPGESEPLAT 547

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
           +   P +  ++R+RDEAHRFA++ HR++R K +  S LDEI G+G  R++ LL  F +V 
Sbjct: 548 DAEQPGVQLLRRVRDEAHRFAVSFHRQQRMKNSRRSRLDEIPGLGFGRQKQLLAHFHSVD 607

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609
            I +++ + L  + GI +++A +IYN+FH 
Sbjct: 608 YIRQATIDQLMEVSGIGEQLAQEIYNYFHP 637


>gi|311742584|ref|ZP_07716393.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM
           15272]
 gi|311314212|gb|EFQ84120.1| excision endonuclease subunit UvrC [Aeromicrobium marinum DSM
           15272]
          Length = 648

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 186/622 (29%), Positives = 305/622 (49%), Gaps = 32/622 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  GRV+YVGKA +L+ R+ SY         R   M++   ++ +TV 
Sbjct: 13  EIPTEPGVYRFRDEGGRVIYVGKAKSLRPRLSSYFADLAGLHERTRRMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+P++ +T   + P +   R +      YFG
Sbjct: 73  GTEVEALQLEYTWIKEFDPRFNVKYRDDKSYPWLAVTVGEEHPRVQVMRGTQRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+  T+++L R F +RSC+  VFR      RPCLL  I +C+ PC G +S++++
Sbjct: 133 PYSHAWAIRDTVDTLLRVFPMRSCSAGVFRRAAAIGRPCLLGDIGKCAAPCVGRVSADEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V +   F++G       +I R M +A+   +YE A   RD L AL  +      +  
Sbjct: 193 RAIVDDFMAFMAGQTAGFTARIERRMVEASEAMEYELAAKLRDDLGALEKVLEKQTVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D      +     +Q      G+ RG   +      + T A ++   +   Y D 
Sbjct: 253 DGTDADVLGFEDDPLETAVQIFSVRGGRIRGQRGWVADKAEDVTFADLVERAVMTLYQDA 312

Query: 298 PC---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  +L+ E   +   L     ++ G  V++ VP++G+KR+++E    NA ++  +
Sbjct: 313 DPGAVPREVLVPELPADHEALAQLLGERRGGPVRLRVPQRGDKRQLMETVEQNAKQALMR 372

Query: 355 KLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                     +  + L++      LP  P RIE +D S++ G   V  MVV  +    K+
Sbjct: 373 HRLKRSSDLTTRSLALEEIQAALDLPDAPLRIECFDISNLQGTEIVASMVVFEDGLPKKS 432

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN--------FHPKKQEYSFPS 462
           +YR+F +       Q D A M  V+ RRF +L+     L              +   F  
Sbjct: 433 EYRRFVVRHE---GQSDVAAMHEVVRRRFERLVAARAGLEEGETEGGIDPETGRPRRFAY 489

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            P +V++DGG  Q+ AA+  + ++ + + + +  +AK  +     E +  +    ++L  
Sbjct: 490 TPSLVVVDGGPPQVEAARRAMAEVGITD-VALCGLAKRLE-----EVWLPRDEHPVILPR 543

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581
               LY +QR+RDEAHRFAIT HR RR K+   S LD++ G+GP R++ L++ FG++K +
Sbjct: 544 TSEGLYLLQRVRDEAHRFAITHHRGRRSKSMVDSVLDDVAGLGPTRRKALMRQFGSLKRL 603

Query: 582 SRSSPETLASIEGISKKIACKI 603
             ++ E +A + GI    A  I
Sbjct: 604 RAATVEEVAQVPGIGPATAQSI 625


>gi|260768672|ref|ZP_05877606.1| excinuclease ABC subunit C [Vibrio furnissii CIP 102972]
 gi|260616702|gb|EEX41887.1| excinuclease ABC subunit C [Vibrio furnissii CIP 102972]
 gi|315180373|gb|ADT87287.1| excinuclease ABC subunit C [Vibrio furnissii NCTC 11218]
          Length = 609

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 199/619 (32%), Positives = 326/619 (52%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY      + +   +++ I  I  T+
Sbjct: 10  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLSSYFRKKIDSEKTRALVTHIEKIDVTI 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI I+  H+ P L  HR +   +G YF
Sbjct: 70  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-GHRHPRLSMHRGAKKRKGEYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS ++Y 
Sbjct: 129 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSSIISDDEYA 188

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E V+  + FL G +  + E +   M +A++   +E A   RD++ A+  +Q       + 
Sbjct: 189 ELVNYVRLFLQGKDKQVLEILIDKMEKASMGLRFEDAAKFRDQIHAIRRVQEQQFVSEDS 248

Query: 242 MDCF---SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           MD          K +ACI       G+  G+ + F K    ++  ++   FL Q+Y    
Sbjct: 249 MDDMDVLGFAQEKGIACIHILMIRQGKVLGSRSHFPKIPHNTSQEEVFESFLSQYYLSHN 308

Query: 299 ----CPENILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                P  ILL++    +   ++ +  +  G KV   V   G + + ++ +  NA  + T
Sbjct: 309 EARTMPSRILLNDGLLVDAKPMQDALTQLAGRKVTFHVNPTGTRGRYLKLSNTNALTAIT 368

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K++ +++     K    +  + +I  R+E +D SH MG S +   VV  + G +K +YR
Sbjct: 369 TKINHKMTINQRFKALQDELGIDNIT-RMECFDISHTMGESTIASCVVFNQEGPLKQEYR 427

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M  VLERR+ + +  ++                PD++ +DGGK
Sbjct: 428 RYNI--TGITGGDDYAAMGQVLERRYGKQLDVDK---------------IPDIIFIDGGK 470

Query: 474 GQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GQL+ A  ++ +   +   R  +I IAKG  R  G+E      G+   L    P L+ IQ
Sbjct: 471 GQLNRAHEIMTQCWQDWPKRPRLIGIAKGVTRKPGLETLITTDGDEFHLPSDAPALHLIQ 530

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R++ E +A
Sbjct: 531 HIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRATVEEIA 590

Query: 591 SIEGISKKIACKIYNHFHK 609
            + GIS  +A  IY    +
Sbjct: 591 KVPGISHSLAEIIYQTLKQ 609


>gi|239827946|ref|YP_002950570.1| excinuclease ABC subunit C [Geobacillus sp. WCH70]
 gi|239808239|gb|ACS25304.1| excinuclease ABC, C subunit [Geobacillus sp. WCH70]
          Length = 591

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 185/613 (30%), Positives = 298/613 (48%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y M D  G V+YVGKA  L+ R++SY     H  +   ++++I +  + VT +
Sbjct: 13  LPEQPGCYLMKDKNGTVIYVGKAKVLKNRVRSYFTGT-HDGKTLRLVNEIADFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           +VEAL+LE N+IK+  P++N++L+DDKS+P+I IT   K P L   R      G YFGP+
Sbjct: 72  DVEALILEMNLIKKYDPKYNVMLKDDKSYPFIKIT-AEKHPRLVITRKVKKDGGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R + LR C+        R CL + + +C  PC   +S ++  E V 
Sbjct: 131 PHVQAANETKKLLDRIYPLRKCSTMP----NRVCLYYHMGQCLAPCVYPVSEQQNKEIVE 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FLSGG   +K+++A  M +A    ++E A  +RD++A +         I N     
Sbjct: 187 QIARFLSGGYKEVKKELAEKMMKAAEALEFERAKEYRDQIAYIEATMEKQKMIINDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             +     +          +   P+ 
Sbjct: 247 DVFGYAYDKGWMCVQVFFIRQGKLIERDVSIFPMYQDPDEELLTFLGQFYTKANHFKPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           ++L  + +           +   +V I  PK+G+K+++++ A  NA              
Sbjct: 307 VILPADIDGE-------LAEQLLEVTIVQPKRGKKKELVDLASKNAAIALKEKFYLIERD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K   +P    RIE +DNS+I G   V  MVV  +    K +YRK+ + 
Sbjct: 360 EERTIKAVENLGKILGIPTP-HRIEAFDNSNIHGADPVSAMVVFIDGKPEKKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 419 T--VEGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 462

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L ++  I +  +AK  K     E       + + L       Y +QR++DE 
Sbjct: 463 ARDVLENELGLD--IPLAGLAKDDKHRTS-ELIMGDPPQVVPLERNSQEFYLLQRIQDEV 519

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K    S LD+I G+G  RK+ LL+ FG++K +  ++ E L     I 
Sbjct: 520 HRFAITFHRQARGKTMFRSVLDDIPGVGEKRKKALLKHFGSIKNMKEATVEELQKA-NIP 578

Query: 597 KKIACKIYNHFHK 609
           + +A KIY    +
Sbjct: 579 RSVAEKIYKKLRE 591


>gi|294503976|ref|YP_003568038.1| excinuclease ABC subunit C [Yersinia pestis Z176003]
 gi|262361839|gb|ACY58560.1| excinuclease ABC subunit C [Yersinia pestis D106004]
 gi|294354435|gb|ADE64776.1| excinuclease ABC subunit C [Yersinia pestis Z176003]
          Length = 588

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 211/606 (34%), Positives = 330/606 (54%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D AG V+YVGKA +L+KR+ SY  +     +   ++  I  I  TVT TE EALLLE 
Sbjct: 1   MYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYFGPFPNSYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y   V   + FLSG
Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQRQVDYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251
            +  +  ++   M +A+ +  +E A   RD++ A+  +        +    D   +  + 
Sbjct: 180 KDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307
            LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +LS + +    +K
Sbjct: 300 TLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITRLSQQSTIHQRMK 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           +  K   L     R+E +D SH MG   V   VV   NG V+++YR++N+  + +   DD
Sbjct: 360 ELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL+RR+ + + +++                PDV+ +DGGKGQLS A  V   LN
Sbjct: 417 YAAMAQVLKRRYGKALDDQK---------------IPDVIFIDGGKGQLSQAFDVFASLN 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ +RD++H  AIT
Sbjct: 462 VPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A K
Sbjct: 522 GHRQRRSKVKNTSALEMIEGVGPKRRQVLLKYMGGLQPLFNASVEEIAKVPGISQALAEK 581

Query: 603 IYNHFH 608
           I+N   
Sbjct: 582 IHNALK 587


>gi|300934510|ref|ZP_07149766.1| excinuclease ABC subunit C [Corynebacterium resistens DSM 45100]
          Length = 686

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 181/681 (26%), Positives = 317/681 (46%), Gaps = 82/681 (12%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P+ PGVY   D   RV+YVGKA +L+ R+ +Y    +    R   M+   N +++TV 
Sbjct: 12  TIPDKPGVYTFRDATDRVIYVGKAKSLRSRLSNYFQDLSQLHPRTRAMVQTANRVQWTVV 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EAL LE   IKR  PRFN++ RDDK++P + I+ K +IP  + +R        YFG
Sbjct: 72  SSELEALNLEYTWIKRFNPRFNVMYRDDKTYPMLAISVKEQIPRAFLYRGPRRKGVRYFG 131

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T+ SL R F +R+C   V++      RPCLL  I RCS PC G I+   +
Sbjct: 132 PYPKAWAIRETLESLTRVFPIRTCTTGVYKRHAALDRPCLLGYIDRCSAPCVGNITPGAH 191

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E V++   FL+G   ++  ++ R M  A+   D+E A   RD+L A++ +      ++ 
Sbjct: 192 RELVNQFSSFLAGNTDHVMRQVRREMEAASEALDFERAASLRDQLQAMNKVVERQAVVFS 251

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +   ++  + +Q      G+  G   + ++    S  + +  +  + +  + 
Sbjct: 252 DTTDADLITFVSDELESAVQIFHVRGGRIHGQRGWVVERGDNSDESLLGEFITQFYGEEA 311

Query: 298 --------------------------------------------PCPENILLSEEAEETS 313
                                                       P P+ +L+    E+  
Sbjct: 312 ELARATETAVGGSAASEVDLELAKAINPAAVTELGDLVGDVQVTPVPKEVLVHTMPEDID 371

Query: 314 LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDF 369
            L     +  G +V I VP++G+K++++E A  NA ++  Q          +    L++ 
Sbjct: 372 ELSAWLSELRGSQVTIRVPQRGDKKQLLETANQNAKQALAQHKLKRSGDLTTRSAALQEL 431

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDC 428
            +   +   P RIE  D SHI G   V  +VV  +    K+ YR++ +       + DD 
Sbjct: 432 QEALFMDTSPLRIECVDISHIQGTDVVASLVVFEDGMPKKSDYRRYKIKEAAGDGRSDDV 491

Query: 429 AMMRMVLERRFSQLIKNEENLN-------------------FHPKKQEYSFPSWPDVVIL 469
             +  V+ RRF + ++++  L                       +  +  F   P + ++
Sbjct: 492 GSIAEVVRRRFRRHLEDKTALPMGDEGGELLEGEELLAARAEDGEASKKKFAYPPQLFVV 551

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+ Q++AAQ VL +L + + +T++ IAK  +     E +       +++      LY 
Sbjct: 552 DGGQPQVNAAQEVLDELGITD-VTVVGIAKRLE-----ELWVPGDDYPVIIPRGSDALYL 605

Query: 530 IQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q LRDEAHRFAIT HR++R  +   S LD++ G+GP R+  L+++FG+V  +  ++ E 
Sbjct: 606 VQYLRDEAHRFAITFHRQQRSARMRRSVLDDVPGLGPKRRAQLVKAFGSVAKVKAATVEE 665

Query: 589 LASIEGISKKIACKIYNHFHK 609
           +A + G   ++A  I+    K
Sbjct: 666 IAKLPGFGPQLATAIHEALQK 686


>gi|291523952|emb|CBK89539.1| excinuclease ABC, C subunit [Eubacterium rectale DSM 17629]
          Length = 624

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 191/620 (30%), Positives = 320/620 (51%), Gaps = 21/620 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
             +++P+ PGVY M D    ++Y+GKA +L KR+  Y  ++++   +   M+  I++  +
Sbjct: 10  ELKKLPDAPGVYIMHDKDDVIIYIGKAKSLTKRVHQYFQASHNEGIKKKQMVEHIDHFEY 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK   P++N +LRDDK++PYI +T     P +   R     +  
Sbjct: 70  IVTDSELEALVLECNLIKEHTPKYNTMLRDDKTYPYIKVTLGEDYPRVLFSRQMKKDKSR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ +I+ + + + LR+C   + R     RPCL + I +CS PC G ++ E
Sbjct: 130 YFGPYTSASAVKSSIDLINKIYKLRTCNRRLPRDIGADRPCLNYHIHQCSAPCQGYVTKE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   V  A  FL+G      + ++  M +A+   ++E A  +RD + ++  +       
Sbjct: 190 EYAIAVKGAIDFLNGDYEQTIKALSDKMLKASESMEFEKAAEYRDLINSVKQVAQKQKIT 249

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L ++   A +Q  F   G+  G   F ++  SE     +L+ F++QFY+
Sbjct: 250 NADGEDKDIIALANDDTDAVVQVFFIRNGKLIGRDHFHVRVGSEEAADDVLNNFVKQFYS 309

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
             P  P  ++L  E E+ ++LE    ++ G +V I VP++G K K++E A  NA     +
Sbjct: 310 GTPFIPREVMLQSEIEDMAVLEQWLSEKRGRRVNIKVPQKGMKEKLVELAYKNALLVLSQ 369

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      L H   R+E YD S+I G   VG M+V  +    K+
Sbjct: 370 DKERIKREEGRTIGAVKEIEGLLGL-HGLNRMEAYDISNINGFETVGSMIVYEKGKPKKS 428

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469
            YRKF L    V   DD A M  VL RRF+  ++ ++ L      QE  SF  +PD++++
Sbjct: 429 DYRKFKLRT--VTGPDDYASMHEVLTRRFTHGMEEQKQLEKDGSPQEIGSFNRFPDIIMM 486

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++    VL +L ++  I +  + K                  + ++        
Sbjct: 487 DGGRGQVNICLQVLSELGLD--IPVCGMVKDDFHRTRG---LYYNNVEIPIDRHGEGFKL 541

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DEAHRFAI  HR  R K+  +S LD+I GIGP R++ L++ + +++ I  +  E 
Sbjct: 542 ITRIQDEAHRFAIEFHRSLRSKSQIHSVLDDIEGIGPARRKALMRRYQSLEKIKEADVED 601

Query: 589 LASIEGISKKIACKIYNHFH 608
           L   E +++K A  +Y  FH
Sbjct: 602 LMQTETMNEKAAQAVYAFFH 621


>gi|229493469|ref|ZP_04387254.1| excinuclease ABC subunit C [Rhodococcus erythropolis SK121]
 gi|229319430|gb|EEN85266.1| excinuclease ABC subunit C [Rhodococcus erythropolis SK121]
          Length = 730

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 185/659 (28%), Positives = 304/659 (46%), Gaps = 62/659 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY         R   M++   ++ +TV 
Sbjct: 13  TIPAAPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVTTLHPRTRQMVTTAGSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDK++P + +T   + P L+ +R        YFG
Sbjct: 73  STEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLFVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FL+G    L + + + M QA+   D+E+A   RD + AL         +  
Sbjct: 193 RQIVEDFCDFLAGRTDKLVKDLEKRMQQASEDLDFETAARLRDDIGALRKALEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT----------DSESTNAQILS 287
                D  +   +   A +Q      G+ RG   + ++           D+ES    ++ 
Sbjct: 253 DGTDADLVAFATDDLEAAVQVFHVRGGRVRGQRGWVVEKAGDAIDWAALDAESDLPILVE 312

Query: 288 YFLRQFYTDK--------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPK 333
            FL QFY ++                P+ +L+       + ++    K  G +V++ VP+
Sbjct: 313 QFLTQFYGEQAALDPGAGSEAGISAVPKEVLVPVLPANATEIQAWLSKLRGSQVQLRVPQ 372

Query: 334 QGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSH 389
           +G+K+ + E    NA  +  Q          S    L+   +   L   P RIE  D SH
Sbjct: 373 RGDKKDLAETVQRNAKEALAQHKLKRAGDFTSRSAALQGIQEALDLDSAPLRIECIDISH 432

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN--- 445
           + G   V  +VV  +    K+ YR + +         DD A +  +  RRF +  ++   
Sbjct: 433 VQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGHSDDVASIAEITRRRFLRHNRDLGV 492

Query: 446 ----------------EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
                            E        +   F   P++ ++DGG  Q++AA  VL +L V 
Sbjct: 493 LAASASTMDSDGGDLAPEAAIDPATGRPRRFAYPPNLFVVDGGAPQVTAAAAVLDELGVT 552

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549
           + + ++ +AK  +     E +   + + ++L      LY +QR+RDEAHRFAIT HR +R
Sbjct: 553 D-VAVVGLAKRLE-----EVWVPGEEDPVILPRTSESLYLLQRIRDEAHRFAITFHRSKR 606

Query: 550 K-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             +   S LD + G+G  R+  L+  FG+V  +  ++ E +  + GI +  A  +    
Sbjct: 607 SRRMTASALDSVKGLGETRRTALVAHFGSVAKLKTATVEEIMQVPGIGETTATAVLAAL 665


>gi|226306512|ref|YP_002766472.1| UvrABC system protein C [Rhodococcus erythropolis PR4]
 gi|259710345|sp|C0ZZE8|UVRC_RHOE4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226185629|dbj|BAH33733.1| UvrABC system protein C [Rhodococcus erythropolis PR4]
          Length = 730

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 185/659 (28%), Positives = 304/659 (46%), Gaps = 62/659 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY         R   M++   ++ +TV 
Sbjct: 13  TIPAAPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVTTLHPRTRQMVTTAGSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDK++P + +T   + P L+ +R        YFG
Sbjct: 73  STEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLFVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+E++
Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSSGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FL+G    L + + + M QA+   D+E+A   RD + AL         +  
Sbjct: 193 RQIVEDFCDFLAGRTDKLVKDLEKRMQQASEDLDFETAARLRDDIGALRKALEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT----------DSESTNAQILS 287
                D  +   +   A +Q      G+ RG   + ++           D+ES    ++ 
Sbjct: 253 DGTDADLVAFATDDLEAAVQVFHVRGGRVRGQRGWVVEKAGDAIDWAALDAESDLPILVE 312

Query: 288 YFLRQFYTDK--------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPK 333
            FL QFY ++                P+ +L+       + ++    K  G +V++ VP+
Sbjct: 313 QFLTQFYGEQAALDPGAGSEAGISAVPKEVLVPVLPANATEIQAWLSKLRGSQVQLRVPQ 372

Query: 334 QGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSH 389
           +G+K+ + E    NA  +  Q          S    L+   +   L   P RIE  D SH
Sbjct: 373 RGDKKDLAETVQRNAKEALAQHKLKRAGDFTSRSAALQGIQEALDLDSAPLRIECIDISH 432

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN--- 445
           + G   V  +VV  +    K+ YR + +         DD A +  +  RRF +  ++   
Sbjct: 433 VQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGHSDDVASIAEITRRRFIRHNRDLGI 492

Query: 446 ----------------EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
                            E        +   F   P++ ++DGG  Q++AA  VL +L V 
Sbjct: 493 LAASASTMDADGGDLAPEAAIDPATGRPRRFAYPPNLFVVDGGAPQVTAAAAVLDELGVT 552

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549
           + + ++ +AK  +     E +   + + ++L      LY +QR+RDEAHRFAIT HR +R
Sbjct: 553 D-VAVVGLAKRLE-----EVWVPGEEDPVILPRTSESLYLLQRIRDEAHRFAITFHRSKR 606

Query: 550 K-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             +   S LD + G+G  R+  L+  FG+V  +  ++ E +  + GI +  A  +    
Sbjct: 607 SRRMTASALDSVKGLGETRRTALVAHFGSVAKLKTATVEEIMQVPGIGETTATAVLAAL 665


>gi|119961068|ref|YP_947827.1| excinuclease ABC subunit C [Arthrobacter aurescens TC1]
 gi|189038020|sp|A1R6G5|UVRC_ARTAT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119947927|gb|ABM06838.1| excinuclease ABC, C subunit [Arthrobacter aurescens TC1]
          Length = 671

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 185/648 (28%), Positives = 315/648 (48%), Gaps = 51/648 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + ++P  PGVY+  D  GRV+YVGKA NL+ R+ SY  +      +   M+   +++ +
Sbjct: 10  QTGEIPTTPGVYRFRDPHGRVIYVGKAKNLRSRLNSYFANPAGLLPKTHAMVHAASSVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  +E+E+L LE   IK  KPRFN++ RDDK++PY+ +T   K P +   R        
Sbjct: 70  TVVGSELESLQLEYTWIKEFKPRFNVVFRDDKTYPYLAVTMGEKYPRVQVMRGERRKGTR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T+++L R F +RSC+  VF+      RPCLL  I +CS PC G ++ 
Sbjct: 130 YFGPYT-AGAIRETMDTLLRVFPVRSCSAGVFKRAESSGRPCLLGYIDKCSAPCVGRVTP 188

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           +++     +   F+ G       ++ ++M  A  + DYE A   RD + AL  +   N  
Sbjct: 189 DEHRGLAEDFCSFMGGEAKRFISRLEKDMAAAVAELDYERAAGLRDDIIALRKVFERNAV 248

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D F+L+ ++  A +Q      G+ RG   + ++   ++T  +++ + L+Q Y
Sbjct: 249 VLAEDTDADVFALHEDELEASVQVFHVRGGRVRGQRGWVVEKVEDATTPELIEHLLQQVY 308

Query: 295 TDKP-----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
            +        P  +L+ E     + L        G +V I VP++G+K  ++     NA 
Sbjct: 309 GEDSEVQGRIPREVLVPENPSNHAELMEWLGGLRGARVDIRVPQRGDKAALMSTVRENAE 368

Query: 350 RSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
           ++     +          + L++  +   +P    RIE +D SH+ G + V  MVVV + 
Sbjct: 369 QALKLHKTRRAGDITVRSLALQELQEALEIPVPLLRIECFDISHVQGTNVVASMVVVEDG 428

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------------ 447
              K+ YRKF++           A M  VL RRF   + ++                   
Sbjct: 429 LPKKSDYRKFSITGAAATDDT--AAMHDVLTRRFRHYLTDKAAQVPIVSGEIVNPTRAGA 486

Query: 448 -------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                    +      +  F   P++V++DGG+ Q++AA   L +L +++ + ++ +AK 
Sbjct: 487 KSGTELPPSDLDVPAPKAKFAYPPNLVVVDGGQPQVNAAARALAELGIDD-VYVVGLAKR 545

Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDE 559
            +     E +       ++L      LY +QR+RDEAHRFAIT HR++R KA   S LD 
Sbjct: 546 LE-----EVWLPDSDFPVILPRTSQGLYLLQRIRDEAHRFAITFHRQKRGKAMTVSVLDG 600

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + G+G  +++ L+  FG++K I  +S E L S +GI   +A  +  H 
Sbjct: 601 VPGLGEAKRKALVAHFGSLKKIKAASVEELTSAKGIGPALAAAVVQHL 648


>gi|269925891|ref|YP_003322514.1| excinuclease ABC, C subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269789551|gb|ACZ41692.1| excinuclease ABC, C subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 613

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 197/616 (31%), Positives = 319/616 (51%), Gaps = 27/616 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +PE PGVY M D  G+V+YVGKA  L+ R++SY  S +   +I  M+ QI++I + V
Sbjct: 14  LQAIPEKPGVYLMKDKHGKVIYVGKAKVLRNRVRSYFSSKHLPEKIREMVPQIHDIDYIV 73

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL LE  +IK   P++N + +DDK  PYI +T + + P + K R        Y+
Sbjct: 74  TDSEHEALTLEVTLIKHHMPKYNSMFKDDKRLPYIKVTVQEEFPRVLKCRQIINDGSKYY 133

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181
           GP+ ++ +  + I  + + F L    +     + +RPCL + + RC G C G    ++Y 
Sbjct: 134 GPYTALGSAAEAIKLIHQHFMLCHKENEPIDGKQSRPCLPYYLHRCLGACAGRADPQEYR 193

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
               +   FL G +  L EK+ R M +A    ++E A ++R+++ A+  I+     +   
Sbjct: 194 AATEQVILFLEGKHDELTEKLRRKMEEAAENLEFEKAALYRNQIKAIEDIRQRQKVVLPT 253

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297
              MD  S+  +   A I+  F   G+  G     ++   + +  QI+   L QFY    
Sbjct: 254 NEDMDIISIALDGGEAGIERLFIRDGRLVGHDHSVVELIEDQSPGQIIQIALEQFYIGTY 313

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHT 353
             P  I+L    +E  L++ +  + +  ++ + VP +GEK +++  A  NA         
Sbjct: 314 NIPGRIVLQYPPDEIELIQSALQEYHKREIILEVPTEGEKLELVNMAAQNAKEGLERKRF 373

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           + LS E      + +  K+  LP  P RIE YD S++ G  AVG MVV  +    +NQYR
Sbjct: 374 KWLSEEQKRTGAMLELQKELQLPIKPSRIECYDISNVQGADAVGSMVVFEDGAPARNQYR 433

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           +F +    V+  +D  MMR VL RRF +   NE         +E S+   PD++I+DGGK
Sbjct: 434 RFRIKG--VEGPNDFEMMREVLTRRFKRATSNE--------YRETSWGKLPDLIIIDGGK 483

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQL  A  VL+   +   I +  +AK  +     E F   + ++++L      LY +QR+
Sbjct: 484 GQLGVAVEVLQSFGL-GNIPVFGLAKQQE-----ELFKPGRSDSIMLPRDSEALYLLQRI 537

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL-AS 591
           RDEAHRFA+  HR    KK+  S LD++ GIGP RK+ L+Q+FG+V  I  +S + + A+
Sbjct: 538 RDEAHRFALGYHRSLHTKKSVGSILDQVPGIGPKRKKALIQAFGSVSKIREASIDEIMAA 597

Query: 592 IEGISKKIACKIYNHF 607
           ++GI +    ++    
Sbjct: 598 VKGIDRATVIRLKEAL 613


>gi|154484305|ref|ZP_02026753.1| hypothetical protein EUBVEN_02018 [Eubacterium ventriosum ATCC
           27560]
 gi|149734782|gb|EDM50699.1| hypothetical protein EUBVEN_02018 [Eubacterium ventriosum ATCC
           27560]
          Length = 633

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 208/633 (32%), Positives = 329/633 (51%), Gaps = 34/633 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
             ++MP+ PGVY M D    V+YVGKA NL++R+ SY   +     +I  M+S+I    +
Sbjct: 9   ELKKMPQTPGVYLMHDAHDDVIYVGKAVNLKRRVSSYFRKSTKRTTKIESMVSKIRRFEY 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +L DDK++PY++IT     P +   R        
Sbjct: 69  ILTDSELEALILECNLIKEYRPKYNTMLMDDKTYPYVMITVSEDYPRIVLARRMKKDNNK 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA---------------DSVFRHRTRPCLLFQIK 165
           YFGPF S  AV+ TI+ LQ+ + +RSC                 ++ +   RPCL + I 
Sbjct: 129 YFGPFTSSAAVKDTIDLLQKMYQIRSCNKAIVSDGTYTADGEYKNIPKINGRPCLYYHIG 188

Query: 166 RCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225
           +C GPC G IS E Y E +++A KFL G      +++   M +A+   D+E A+  RD +
Sbjct: 189 QCKGPCQGYISKEDYRENINKAIKFLEGNYTLTIKELEEKMQEASANLDFEKAMECRDLI 248

Query: 226 AALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN 282
            +++H+  +     ++    D  +     N A +Q  F   G+  G   F+L T    T 
Sbjct: 249 NSINHVAGNQKITTHQFEDRDIIAYAEEGNDAVVQVFFVRNGKLIGREHFYLTTVPGDTG 308

Query: 283 AQILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             IL+ F++Q+Y   P  P  +L+ EE EE  LL     +   Y V+I  PK+G K K++
Sbjct: 309 KDILTSFIKQYYIGTPFIPRELLVQEEVEEPELLSQLLSRNQNYTVRIVNPKKGSKEKLV 368

Query: 342 EQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397
           E A  NA     ++  +    +      +++  +   +     R+E YD S+  G  +V 
Sbjct: 369 ELAAKNAGNLLEQNKEKYRREQKRTVGAVEEIEELIGIT-GIHRMEAYDISNTNGYESVA 427

Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-Q 456
            M+V  +    +N YRKF +    VK  DD A MR VL RRF   I+  E L+   K  +
Sbjct: 428 SMIVYEDGKPKRNNYRKFRIKS--VKGPDDYASMREVLTRRFRHGIEEREKLDMEEKDYK 485

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
             SF ++PD++++DGGKGQ++ A  VL  LN+   I +  + K                E
Sbjct: 486 LGSFSNFPDILMMDGGKGQVNIALEVLDSLNLH--IPVCGMVKDDNHRTRG---LYYNNE 540

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSF 575
            + +         I R++DE HRFAI  HR  R KK  +S LD+I+G+GP R++ L++ F
Sbjct: 541 EIPIAKNSEGFRLITRMQDETHRFAIEYHRSLRNKKQVHSILDDISGVGPARRKALMREF 600

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            +++ I  ++ E L+ ++ IS+K+A  IY  FH
Sbjct: 601 KSIEGIREATVEQLSQVDTISEKVAKDIYKFFH 633


>gi|260578777|ref|ZP_05846684.1| excinuclease ABC, C subunit [Corynebacterium jeikeium ATCC 43734]
 gi|258603075|gb|EEW16345.1| excinuclease ABC, C subunit [Corynebacterium jeikeium ATCC 43734]
          Length = 690

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 194/684 (28%), Positives = 321/684 (46%), Gaps = 87/684 (12%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY   D   RV+YVGKA NL+ R+ +Y    +    R   M+   N++++TV 
Sbjct: 12  SIPTDPGVYTFRDAHERVIYVGKAKNLRARLSNYFQDLSQLHPRTRAMVQSANHVQWTVV 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EAL LE   IKR  PRFN++ RDDK++P + I+ K +IP  + +R        YFG
Sbjct: 72  SSELEALNLEYTWIKRFNPRFNVMYRDDKTYPMLAISVKEQIPRAFMYRGPRRKGVRYFG 131

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T+ SL R F +R+C+  V+R      RPCLL  I RCS PC  +I+ E +
Sbjct: 132 PYPKAWAIRETLESLTRVFPIRTCSAGVYRRHEALGRPCLLGYIDRCSAPCVDKITPEDH 191

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V +   FL+G    +  ++ + M QA+   D+E A   RD+L A+         +++
Sbjct: 192 RALVDQFSSFLAGNTDPVLRRVRKEMEQASENLDFERAASLRDQLQAMQKSMERQAVVFS 251

Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +   ++  A +Q      G+  G   + ++   + +  ++++ F+ QFY + 
Sbjct: 252 DNTDADLIAFVADELEAAVQIFHVRGGRIHGQRGWVVER-EDLSEEKLVADFITQFYGET 310

Query: 298 ---------------------------------------------PCPENILLSEEAEET 312
                                                        P P  IL+    EE 
Sbjct: 311 AELAKATETQVGGASGPEVDRDLARAINPAAAQDLGDLVGDVQVTPVPREILVHAMPEEA 370

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKD 368
             L        G +V+I VP++G+K+ ++  A  NA ++  Q          +    LK+
Sbjct: 371 EDLAAWLTSLRGSRVEIRVPQRGDKKTLMTTAETNATQALAQHKLKRAGDITARSAALKE 430

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DD 427
             +   +   P RIE  D SHI G   V  +VV  +    K  YR++ +         DD
Sbjct: 431 LQEALWMDESPLRIECTDISHIQGTDVVASLVVFEDGLPKKADYRRYKIRDAAGDGHSDD 490

Query: 428 CAMMRMVLERRFSQLIKNEENLN----------------------FHPKKQEYSFPSWPD 465
            A +  V+ RRF +  +++  +                         P  ++  F   P 
Sbjct: 491 VASIAEVVRRRFKRYQQDKSAVPAGDDAGDLLEGETELEDSAAEGTDPASEKRKFAYPPQ 550

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           + I+DGG  Q++AAQ VL +L + N +T++ IAK  +     E +   +   +++    P
Sbjct: 551 LFIVDGGLPQVNAAQEVLDELGI-NDVTLVGIAKRLE-----EIWVPGEEYPIIVPRNSP 604

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            LY +Q LRDEAHRFAIT HR++R  +   S LD+I G+GP R++ L++ FG+V  + ++
Sbjct: 605 ALYLVQNLRDEAHRFAITFHRQQRSARMRRSKLDDIPGLGPKRRKQLVKEFGSVMRVKQA 664

Query: 585 SPETLASIEGISKKIACKIYNHFH 608
           S E +A++ G   K+A  I++  +
Sbjct: 665 SVEDIAALPGFGPKLAQLIHDALN 688


>gi|226227004|ref|YP_002761110.1| UvrABC system protein C [Gemmatimonas aurantiaca T-27]
 gi|259710341|sp|C1A8T0|UVRC_GEMAT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226090195|dbj|BAH38640.1| UvrABC system protein C [Gemmatimonas aurantiaca T-27]
          Length = 616

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 182/614 (29%), Positives = 291/614 (47%), Gaps = 38/614 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY-MHSNNHTHRITHMISQINNIRFTVT 63
            +PE PGVY   D+ G+VLYVGKA  L+ R++SY    +  + +   M+ ++ ++   V 
Sbjct: 9   HLPESPGVYLWKDVEGQVLYVGKAKRLRSRVRSYWAQEHESSPKTRAMVRKVRDLETIVV 68

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E  AL+LEA +IK   PRFNI LRDDKS+PYI +T     P +   R        YFG
Sbjct: 69  PSEAHALILEATLIKEYHPRFNIALRDDKSYPYIRVTVNEPFPRVMVTRRLLDDGARYFG 128

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF-RHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           P+  V A+ + +N ++R F +RSC  ++      RPCL + IKRC  PC G  S E Y  
Sbjct: 129 PYTDVGAMRRALNVVKRIFTVRSCHYALPGEAPERPCLDYSIKRCKAPCVGYQSREDYRA 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIY 239
            + E   FL G   ++   +   M  A+ + D+E A   RD LA L  +++ +   +   
Sbjct: 189 MIDEVVWFLDGRTSDVMHHVRERMLDASERLDFERAAELRDALAHLEKMESPSVVLEVEG 248

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D      +   AC+       G+        L+   +  +  +L   L Q+Y     
Sbjct: 249 GDRDVVGYARDGEDACVAVMRIRGGKLLARDHRLLEHAEDEEDGAVLGACLAQWYRTAEA 308

Query: 300 -PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
               +L+  + E+         +       I VP++G +R +++ A  NA          
Sbjct: 309 RAGELLVPFDFEDRE-----SLEASLDGTHIRVPQRGPRRALVDLADQNARHLLEEFKLA 363

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            L  +      + +  ++  LP +P+ +  +D SH  G   V   V        +++YRK
Sbjct: 364 ALEADERAVDPVYELQRELGLPRLPRSLVCFDISHAQGTDVVASAVFFENGRPKRSEYRK 423

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +     +  DD   M  V+ R F + +  E+ L              PD+ ++DGGKG
Sbjct: 424 FKIK--VFEGNDDFRSMHEVVTRYFRRRLDEEKPL--------------PDLAVIDGGKG 467

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QL AA+  L +L    +I +IS+AK  +     E F   + + + L  R P L  +Q+ R
Sbjct: 468 QLGAARAALDELGAP-QIGLISLAKREE-----EIFQYGRPDPVRLPRRSPALRMLQQAR 521

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT  R++R  +   S L +I G+GP ++R LL +FG+V+ +  +S E +A+I 
Sbjct: 522 DEAHRFAITFQRQKRAARTITSELLKIPGVGPTKRRALLHTFGSVQGVREASVEQIAAIP 581

Query: 594 GISKKIACKIYNHF 607
           G     A ++    
Sbjct: 582 GFGAASARRLLEAL 595


>gi|317406698|gb|EFV86861.1| UvrABC system protein C [Achromobacter xylosoxidans C54]
          Length = 609

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 210/614 (34%), Positives = 321/614 (52%), Gaps = 28/614 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+ LD AG V+YVGKA +L+KR+ SY   N  + RI  M++++  +  TVT 
Sbjct: 13  DLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVARLEVTVTR 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+IK LKPR+NIL RDDKS+PY+LIT  H  P +  +R ++  +G YFGP
Sbjct: 73  SEAEALILENNLIKSLKPRYNILFRDDKSYPYLLIT-GHDWPRIAYYRGATNKRGQYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +  AV +TI  LQ+ F LR+C D+VF +R+RPCLL QI RCS PC G + ++ Y   V
Sbjct: 132 FPNAWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGAVQAQDYASDV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241
             A +FL+G   ++  +I   M +A     +E A   RD++ +L+ + +     +     
Sbjct: 192 QRAVRFLNGEAKDVMGEIEARMLEAAEALRFEEAAALRDQMGSLARVLHQQTMENVSGED 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  ++       C+       G++ G   FF          Q+L  F+ Q YTD   P 
Sbjct: 252 TDIVAVAIAGGKVCVNLAMVRGGRHLGDKPFFPTHAEGEAAPQVLEAFVAQHYTDNALPP 311

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++ S    +  L+++   +  G   ++    QG +R  +EQA+ NA  +  + L+   +
Sbjct: 312 VLVCSHALPDAGLIDLLVEQAGGRPSRVLTRPQGARRAWLEQAVKNAEMALARALTESGA 371

Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                    +   L          RIE +D SH  G +     VV   +    + YR++N
Sbjct: 372 RAARTLALAETLDLDTDEAALDALRIECFDISHTAGEATQASCVVFEHHDMQPSLYRRYN 431

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A MR VL RRF+++   E                 P +V++DGGKGQ+
Sbjct: 432 I--AGITPGDDYAAMRQVLTRRFAKVADGE--------------AQMPGLVLIDGGKGQV 475

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535
             A+ V  +L ++ +  ++ +AKG  R  G+E      G   + L      L  I ++RD
Sbjct: 476 EVARQVFAELGLDIQ-ALVGVAKGEGRKVGLETLVFADGRPPVALGGESAALMLIAQVRD 534

Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT  R RR K    S L+EI G+G  R++ LL  FG    ++ +S E LAS++G
Sbjct: 535 EAHRFAITGMRARRAKTRNVSRLEEIEGVGARRRQRLLARFGGFSGVASASIEDLASVDG 594

Query: 595 ISKKIACKIYNHFH 608
           IS+++A +IY    
Sbjct: 595 ISEELAERIYEALR 608


>gi|255523402|ref|ZP_05390371.1| excinuclease ABC, C subunit [Clostridium carboxidivorans P7]
 gi|296184685|ref|ZP_06853096.1| excinuclease ABC subunit C [Clostridium carboxidivorans P7]
 gi|255512860|gb|EET89131.1| excinuclease ABC, C subunit [Clostridium carboxidivorans P7]
 gi|296050467|gb|EFG89890.1| excinuclease ABC subunit C [Clostridium carboxidivorans P7]
          Length = 622

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 194/621 (31%), Positives = 318/621 (51%), Gaps = 19/621 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            + +P+ PGVY M +  G ++YVGKA  L+ R+K Y  ++ NH+ ++  M+  I    + 
Sbjct: 8   LKVLPDKPGVYLMKNSLGEIIYVGKAKVLKNRVKQYFQNSRNHSEKVKAMVKNIAEFEYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +E+EAL+LE N+IK+  PR+NILL+DDK +P+I IT     P ++  R  +   G Y
Sbjct: 68  VTDSEMEALILECNLIKKYTPRYNILLKDDKHYPFIKITTNEDFPRIFVTRILAKDGGKY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEK 179
           FGP+    AV +TI  L++ F +R+C   +     + RPCL + I  C  PC G I+  +
Sbjct: 128 FGPYTDSSAVYETIEFLKKIFPIRTCRKLIKESSEKIRPCLNYHIGLCKAPCGGHITKNE 187

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + V    + LSG +  +   +  +M +A+   ++E A   RD++ A+  I      I 
Sbjct: 188 YNKMVGNIIELLSGKDKVIINSLTSDMEEASENLEFEKAAALRDKIMAVRKITEKQKIIT 247

Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++Y ++  +CIQ  F   G+  G   F ++    + N +I++ F++ FY  
Sbjct: 248 GNFEDEDFINVYSDEKDSCIQVFFLRNGKITGREHFIIENTEGTNNEEIIADFIKGFYGG 307

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
                  +   E E+  LLE     + G KV + +P++G K+  +     NA  +     
Sbjct: 308 TAYIPKTMYVPEVEDQILLEQWLAIKRGSKVNVKIPQKGSKKDTLNLVQKNAKMTLENFK 367

Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              I  + +    LKD +    L  I  RIE YD S+I G  +VG MVV  E     + Y
Sbjct: 368 LKFIQDRKLYDESLKDLSSILRLEDIAHRIEAYDISNIQGVDSVGTMVVFEEGRPKNSDY 427

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471
           R+F    N VK  +D   MR +L RRF   +   E +     +     F  +PD++++DG
Sbjct: 428 RRF--KINTVKGANDYESMREILTRRFQHGLDEIEKIQKTKLELSAGKFCVFPDLILMDG 485

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQ++ A  VLKK ++   I +  + K  K +       +   E ++++    ++  + 
Sbjct: 486 GKGQVNIALEVLKKFDI--NIPVCGMVKDDKHNTRG---IIYNNEEILIDSHSNVMKLVT 540

Query: 532 RLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R++DE HRFAIT HR  R K+  +S L++I  +G  R++ LL+SFG+++ I  +  E L 
Sbjct: 541 RIQDEVHRFAITYHRSLRNKRILHSILEDIPNVGEKRRKELLKSFGSIENIKVAKYEELI 600

Query: 591 SIEGISKKIACKIYNHFHKNT 611
            +  I +K A  I  +F  N 
Sbjct: 601 KVPSIDRKAAESIIEYFRGND 621


>gi|270261294|ref|ZP_06189567.1| excinuclease ABC subunit C [Serratia odorifera 4Rx13]
 gi|270044778|gb|EFA17869.1| excinuclease ABC subunit C [Serratia odorifera 4Rx13]
          Length = 588

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/606 (35%), Positives = 329/606 (54%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY      + +   ++  I  I  TVT TE EALLLE 
Sbjct: 1   MYDATGTVIYVGKAKDLKKRLVSYFRQQVGSRKTEALVKNIAQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPLIFLS-ADSHPRLAVHRGAKHAKGEYFGPFPNSYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + V   + FLSG
Sbjct: 120 LALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYQQQVDYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRMDCFSLYHNK 251
            +  +  ++   M  A+   ++E A   RD++ A+  +          + +D   +    
Sbjct: 180 KDQQVLHQLIERMENASKALNFEDAARIRDQIQAVRRVTERQFVSGNSDDLDVIGVAFEA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GMACLHVLFIRQGKVLGSRSYFPKVPGGTEMSEVVQTFVGQFYLQGSQARTLPAEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              E  LL  S  +  G K++I    +G++ + ++ A  NA  + T KLS + +    L 
Sbjct: 300 NLPEKDLLAESLSELAGRKIQIQSKPRGDRARYLKLARTNAATALTTKLSQQSTIHQRLA 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           + TK   L     R+E +D SH MG   V   VV   NG ++++YR++N+    +   DD
Sbjct: 360 ELTKILNLS-EINRMECFDISHTMGEQTVASCVVFDGNGPLRSEYRRYNI--AGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL+RR+ + ++  +                PDV+ +DGGKGQL  A  V   LN
Sbjct: 417 YAAMAQVLKRRYGKALEENK---------------IPDVIFIDGGKGQLGMAIEVFNSLN 461

Query: 488 V---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   +N+  +I IAKG  R AG+E  FFV +GE + L    P L+ IQ +RD++H  AIT
Sbjct: 462 VTWDKNKPLLIGIAKGADRKAGLETLFFVPEGEGISLPSDSPALHVIQHIRDDSHNHAIT 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR+RR K    S L+ I+G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A K
Sbjct: 522 GHRQRRAKVRNTSALELIDGVGPKRRQVLLKYMGGLQPLLNASVEEIAKVPGISQALAEK 581

Query: 603 IYNHFH 608
           IYN   
Sbjct: 582 IYNALK 587


>gi|307545401|ref|YP_003897880.1| excinuclease ABC subunit C [Halomonas elongata DSM 2581]
 gi|307217425|emb|CBV42695.1| excinuclease ABC subunit C [Halomonas elongata DSM 2581]
          Length = 604

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 218/613 (35%), Positives = 330/613 (53%), Gaps = 25/613 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + + E PGVY+MLD  G  LYVGKA  L+ R+ SY     +T +   ++S+I +I+ TV
Sbjct: 9   LDTITESPGVYRMLDEQGETLYVGKARRLKARLASYFRGTLNT-KTQALVSRIADIQVTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSY 121
           T +E EALLLE  +IK  +P +NILLRDDKS+P++ +TD+H  PAL   R  +    G Y
Sbjct: 68  TNSETEALLLEQTLIKEQRPPYNILLRDDKSYPFVFVTDRHPYPALEYKRARTRHGDGRY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
            GP+ S  AV ++++ +Q+ F +R+C DSVF HR+RPCL +QI RCS PC G I  + Y 
Sbjct: 128 LGPYPSSGAVRESLSLMQKIFRIRNCEDSVFAHRSRPCLQYQIGRCSAPCVGYIDEDDYR 187

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239
             +  A + L G +  + +++ R+M  A+   D+E A   RD++  L  +Q         
Sbjct: 188 RDLEHAVQCLEGKSEMVTQELTRDMEAASQALDFEEAARLRDQIQQLRQLQQRQFVDTGS 247

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDK 297
              D F+L       CI       G+  G          + T   +L  F+ Q+Y    +
Sbjct: 248 GDADIFALASRPGALCISVLSVRGGRLLGARHHTPSNGLDLTPDTLLGDFISQYYLGQAR 307

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  I+ S    +T L+  +   + G +V++T   +G + +  E A  NA +  + +L+
Sbjct: 308 EIPAEIITSHALTDTDLIARALETRAGKRVRVTARVRGHRAQWQELARTNAEQQLSSQLA 367

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
           ++              +L  +P R+E +D SH  G + V   VV   NG  K+ YR+FN+
Sbjct: 368 SQSQLAQRFAALGDALSLERVPARLECFDISHSHGEATVASCVVFDANGPRKSDYRRFNI 427

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
              +++  DD A MR  L RRF +L   E                 PD++I+DGGKGQL+
Sbjct: 428 K--NIEAGDDYAAMRQALTRRFKRLKDGE--------------GEAPDLLIVDGGKGQLN 471

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDE 536
            A+ V  +L VE  + +I +AKG  R AG+E  F++     L L+   P L+ +Q +RDE
Sbjct: 472 MAREVFAELGVEG-VGLIGVAKGTTRKAGLETLFIETPDRTLDLDTSSPALHLLQHIRDE 530

Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           +HRFAIT HR RR KA   S L +I G+GP R+R LL+ FG ++ + ++S E LA + GI
Sbjct: 531 SHRFAITGHRTRRDKARRTSTLQDIPGVGPRRRRELLRFFGGLQGVRQASREELARVPGI 590

Query: 596 SKKIACKIYNHFH 608
           S  +A  I+   H
Sbjct: 591 SATLAESIHRALH 603


>gi|218778629|ref|YP_002429947.1| excinuclease ABC subunit C [Desulfatibacillum alkenivorans AK-01]
 gi|226695484|sp|B8FHR2|UVRC_DESAA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|218760013|gb|ACL02479.1| excinuclease ABC, C subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 603

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 205/611 (33%), Positives = 317/611 (51%), Gaps = 27/611 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
            +   PGVY M D +G ++YVGKA +L+KR+ SY     N   +   ++ +I +    + 
Sbjct: 10  TLSNGPGVYLMKDESGEIIYVGKARSLKKRVSSYFLEKPNRDLKTGILVKKIASFDAILV 69

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EAL+LEAN+I++ KPR+NILL+D K FP + I  +   P L   R        YFG
Sbjct: 70  TTEKEALILEANLIRKHKPRYNILLKDGKRFPSLRIDVRTSYPRLEVVRKVKKDGAIYFG 129

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PF+S   +  T+  + +TF LR C       R RPCL +Q+ +C GPC   +  ++Y++ 
Sbjct: 130 PFSSAGKLRSTLKIINKTFQLRKCKQKEPPKRNRPCLNYQMGQCLGPCCLPVDRDEYLDM 189

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242
           V+E   FL G  ++L +KI   M  A+ +++YE A   RDR+ A+        ++     
Sbjct: 190 VNEVILFLKGRTNDLLQKIKEQMAAASERQEYELAARLRDRMFAIQATVEKQAAVTTDFV 249

Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPC 299
             D   +      + I   +   G   G+  +        T+++ +  FLRQ+Y  D+  
Sbjct: 250 DRDVIGIDREPEGSAISVLYIRGGFLLGSRNYNFDEVLG-TDSESIQAFLRQYYDKDRFI 308

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ + +  + E   L+E    +    +V +  P++GEK ++IE A  NAH +   ++S+E
Sbjct: 309 PDEVFVPCQLENMELMEQWLTETAEKRVVLHWPQRGEKTRLIEMANENAHEALKDRISSE 368

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
              + +L+   K+  +   P+RIE +D SH  G   V  M+V  +    K++YR FN+  
Sbjct: 369 NVFKSLLERLQKRLRMDRPPRRIECFDISHTGGNQTVASMIVFEDGKEAKSEYRTFNI-- 426

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           + +   DD A M  V+ RRFS                       PDV+++DGGKGQLS  
Sbjct: 427 DSLDHPDDYAAMHEVMARRFS----------------PDKDWPTPDVLLIDGGKGQLSIT 470

Query: 480 QGVLKKLNVENRITIISIAKGPK-RSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEA 537
             VL  L V     +ISIAK  + +   M+K +   +   +V      +L F+QR+RDEA
Sbjct: 471 ASVLDGLGVMGAFEVISIAKKDEAKKETMDKIYRPGQANPVVFGRDGDVLLFLQRVRDEA 530

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAITTHRK+R K    S LD + GIG  RK+ LL+ FG++K +  +SPE +A + GIS
Sbjct: 531 HRFAITTHRKKRAKTIRKSALDSVPGIGEKRKKALLRHFGSIKRLKEASPEDIAQVPGIS 590

Query: 597 KKIACKIYNHF 607
            K A +I    
Sbjct: 591 VKRAQEILEAL 601


>gi|264677810|ref|YP_003277716.1| excinuclease ABC subunit C [Comamonas testosteroni CNB-2]
 gi|262208322|gb|ACY32420.1| excinuclease ABC, C subunit [Comamonas testosteroni CNB-2]
          Length = 650

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 208/642 (32%), Positives = 321/642 (50%), Gaps = 46/642 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D AG +LYVGKA NL++R+ SY   ++   RI HM+S+I  +  TV  +
Sbjct: 16  LPPLPGVYRYFDAAGVLLYVGKAINLKRRVSSYFQKDHGGTRIGHMVSKIARLETTVVRS 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT------DKH------KIPALYKHRD 113
           E EALLLE N+IK L P++NIL RDDKS+PY+ IT       K       + P +  +R 
Sbjct: 76  EAEALLLENNLIKTLYPKYNILFRDDKSYPYLKITGVAHRDGKEGEPAFQEFPRIAYYRG 135

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
           +   +  YFGP+ S  AV+++I  LQ+ F LR+C D+VF +R+RPCLL+QIKRC+GPC  
Sbjct: 136 AVDKKHRYFGPYPSAWAVKESIQLLQKVFRLRTCEDTVFANRSRPCLLYQIKRCTGPCVD 195

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS E Y   V  A+  L G    L +++   M   + K ++E A   R++L ALS + +
Sbjct: 196 LISPEAYALDVRNAEAMLRGETSELLQQLEARMMAHSDKLEFEQAAEVRNQLTALSRVLH 255

Query: 234 HNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--------- 281
                       D  ++      AC+       G++ G   +F     ++          
Sbjct: 256 QQAIETTDDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPANLGDAASVYSSEEEV 315

Query: 282 ---------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
                       +L  F+ Q Y     P  +++S   E+  +      +Q G ++ +   
Sbjct: 316 DAAAEARPVEELVLEAFIAQHYVGVAVPPTLVVSHPVEKRLV--ELLTEQTGVRITVVQQ 373

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSH 389
            + ++R  +E A  NA     + L+ E S Q   +   +   LP        IE +D SH
Sbjct: 374 PREQRRIWLEMAQKNADIQLARLLAEEGSQQARTRALAEALDLPVENLDELTIECFDISH 433

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G +     VV   +    + YR+FN+    +   DD A MR VL RR+  + + +   
Sbjct: 434 TSGENTKASCVVFHHHKMQSSDYRRFNIEG--ITGGDDYAAMRQVLTRRYKPVAEAQREA 491

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                      P  PD+V++DGGKGQ+S A+ V  +L ++    I+ + KG  R  G+E+
Sbjct: 492 GGAELT--GKQPHLPDLVLVDGGKGQVSMAREVFTELGLDLS-RIVGVEKGEGRKVGLEE 548

Query: 510 FFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPL 566
                G + + L      L  + ++RDEAHRFAIT  R  R K     S L++I G+GP 
Sbjct: 549 LVFADGRDKVYLGHDSAALMLVAQIRDEAHRFAITGMRAARAKVRTGSSSLEDIAGVGPK 608

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++  LLQ FG V+ ++ +S + L ++EGIS  +A +IY   H
Sbjct: 609 KRARLLQRFGGVRGVADASVDDLMTVEGISATLAEEIYKALH 650


>gi|169830506|ref|YP_001716488.1| excinuclease ABC subunit C [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229558021|sp|B1I0W9|UVRC_DESAP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|169637350|gb|ACA58856.1| excinuclease ABC, C subunit [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 614

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 190/621 (30%), Positives = 322/621 (51%), Gaps = 19/621 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +  P+ PGVY      G VLYVGKA +L+ R++SY      + ++  ++ +  ++   
Sbjct: 6   KVKHFPDKPGVYLFRGARGEVLYVGKAVSLKNRVRSYFTGAR-SDKVQALVGKTRDVECL 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +E+EAL+LE+N+IK  +PR+N++L+DDKS+PY+ +T + + P ++  R        Y
Sbjct: 65  VTGSEIEALILESNLIKEHRPRYNVVLKDDKSYPYLKVTVQEEYPRIFLTRAQPRDGARY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ S  AV +T+  L++ F LRSC  + FR + RPCL   I RC GPC+G +  E+Y 
Sbjct: 125 FGPYPSAAAVHETVRLLKKLFPLRSCRQTRFRQQ-RPCLNHHIGRCLGPCSGTVDPERYR 183

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             V E   FL G + +L   +AR M  A    ++E A   RD+L A+  +      +   
Sbjct: 184 AMVQEVLLFLEGRHADLVRGLARKMEAAAANLEFERAAELRDQLRAVEQVLARQSIVSPG 243

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +L  + N   +       G+  G  +  L+  +E ++A++L+ FL+Q+Y +  
Sbjct: 244 REDRDVLALARDGNRGRVIVLEIRDGKLLGRHSLDLQGIAERSDAEVLAAFLKQYYREAG 303

Query: 299 -CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
             P  +LL     EE  L+      +   +V++ VP++G KR+++  A  NA  +  Q  
Sbjct: 304 LIPPEVLLPVPLGEEQGLIAEWLGLRRQGRVRLHVPRRGRKRELVRLAEQNAAEARAQME 363

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
               + + +  +      L   P R+E YD S++ G   VG MVV  +      +YR+F 
Sbjct: 364 FERDAGEAL-AELAAVLGLDQAPARLEGYDISNLQGAQTVGVMVVFEDGRPAPGEYRQFR 422

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +        D  AM  +V  R      + +         ++  F   PD+V++DGGKGQL
Sbjct: 423 VRETAGTPNDFAAMREVVARRFARAREEGKLIATGRLSSRDARFHRLPDLVLVDGGKGQL 482

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           SAA   L++   E  + + ++ K  ++      F   + + + +      L+ +Q LRDE
Sbjct: 483 SAALEGLRETGFE-AVPVFALTKEEEK-----IFAPGRSDPVPVPPGSQALFLLQHLRDE 536

Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFA+ THR+ R + +  S L+EI+GIGP R+R L ++F ++  +  ++   LA++  +
Sbjct: 537 AHRFAVDTHRRTRSRESLRSLLEEIDGIGPARRRALQKAFPSLDALKGATLAELAAVPSM 596

Query: 596 SKKIACKIYNHFHKNTSHTPT 616
           ++K A  +Y++F      TPT
Sbjct: 597 NRKAAQAVYDYFQ----DTPT 613


>gi|238923101|ref|YP_002936614.1| excinuclease ABC subunit C [Eubacterium rectale ATCC 33656]
 gi|238874773|gb|ACR74480.1| excinuclease ABC subunit C [Eubacterium rectale ATCC 33656]
 gi|291528585|emb|CBK94171.1| excinuclease ABC, C subunit [Eubacterium rectale M104/1]
          Length = 624

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 190/620 (30%), Positives = 320/620 (51%), Gaps = 21/620 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
             +++P+ PGVY M D    ++Y+GKA +L KR+  Y  ++++   +   M+  I++  +
Sbjct: 10  ELKKLPDAPGVYIMHDKDDVIIYIGKAKSLTKRVHQYFQASHNEGIKKKQMVEHIDHFEY 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK   P++N +LRDDK++PYI +T     P +   R     +  
Sbjct: 70  IVTDSELEALVLECNLIKEHTPKYNTMLRDDKTYPYIKVTLGEDYPRVLFSRQMKKDKSR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ +I+ + + + LR+C   + R     RPCL + I +C+ PC G ++ E
Sbjct: 130 YFGPYTSASAVKSSIDLINKIYKLRTCNRRLPRDIGADRPCLNYHIHQCNAPCQGYVTKE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   V  A  FL+G      + ++  M +A+   ++E A  +RD + ++  +       
Sbjct: 190 EYAISVKGAIDFLNGDYEQTIKALSDKMLKASESMEFEKAAEYRDLINSVKQVAQKQKIT 249

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L ++   A +Q  F   G+  G   F ++  SE     +L+ F++QFY+
Sbjct: 250 NADGEDKDIIALANDDTDAVVQVFFIRNGKLIGRDHFHVRVGSEEAADDVLNNFVKQFYS 309

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
             P  P  ++L  E E+ ++LE    ++ G +V I VP++G K K++E A  NA     +
Sbjct: 310 GTPFIPREVMLQSEIEDMAVLEQWLSEKRGRRVNIKVPQKGMKEKLVELAYKNALLVLSQ 369

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      L H   R+E YD S+I G   VG M+V  +    K+
Sbjct: 370 DKERIKREEGRTIGAVKEIEGLLGL-HGLNRMEAYDISNINGFETVGSMIVYEKGKPKKS 428

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-YSFPSWPDVVIL 469
            YRKF L    V   DD A M  VL RRF+  ++ ++ L      QE  SF  +PD++++
Sbjct: 429 DYRKFKLRT--VTGPDDYASMHEVLTRRFTHGMEEQKQLEKDGSPQEIGSFNRFPDIIMM 486

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++    VL +L ++  I +  + K                  + ++        
Sbjct: 487 DGGRGQVNICLQVLSELGLD--IPVCGMVKDDFHRTRG---LYYNNVEIPIDRHGEGFKL 541

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DEAHRFAI  HR  R K+  +S LD+I GIGP R++ L++ + +++ I  +  E 
Sbjct: 542 ITRIQDEAHRFAIEFHRSLRSKSQVHSVLDDIEGIGPARRKALMRRYQSLEKIKEADVED 601

Query: 589 LASIEGISKKIACKIYNHFH 608
           L   E +++K A  +Y  FH
Sbjct: 602 LMQTETMNEKAAQAVYAFFH 621


>gi|16330212|ref|NP_440940.1| excinuclease ABC subunit C [Synechocystis sp. PCC 6803]
 gi|3024785|sp|P73580|UVRC_SYNY3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|1652700|dbj|BAA17620.1| excinuclease ABC subunit C [Synechocystis sp. PCC 6803]
          Length = 626

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 199/621 (32%), Positives = 316/621 (50%), Gaps = 32/621 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61
            +++P+ PGVY M D  G +LY+GKA  L+ R++SY   +  HT RI  M+ Q+  I F 
Sbjct: 21  LQEIPQEPGVYFMGDRQGEILYIGKAKKLRTRVRSYFRDSQPHTARIALMVQQVAEIEFI 80

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119
           VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R       + 
Sbjct: 81  VTDTEAEALALEANLIKQHQPHFNVLLKDDKKYPYVCITWSETYPRIFITRKRRLNQAKD 140

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+    ++ +T+  +QR F LR     +F+H  RPCL + I RC G C   I+ E 
Sbjct: 141 RYYGPYVDSFSLRQTLRLIQRIFPLRQRRQPLFKH--RPCLNYDIGRCPGVCQELITPED 198

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +      G    L + + + M +A     +E A + RD++ +L  +        
Sbjct: 199 YRQTLQKVAMVFQGRTQELHQLLTQQMEKAAADLKFEQAALIRDQINSLGKLNADQKVSL 258

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK-TDSESTNAQILSYFLRQFY 294
            +     D  ++  +  ++ IQ      G+  G   FF    +SE    ++L   L Q Y
Sbjct: 259 PQDTISRDAIAVASDGQISAIQLFQIRAGRLVGRLGFFADGVESELEKGEVLQRVLEQHY 318

Query: 295 TD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                   P  ++L     +  LL      Q G KV   +P++  K +++E    NA   
Sbjct: 319 QQVEAVEIPSEVILPCALPDGELLNDWLTSQRGRKVTFNLPQRQTKAELLEMVERNAQYE 378

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +       +   L+D  +   L  +PKRIE YD SHI G +AV   VV  +    +  
Sbjct: 379 LERLQKQTAKNVTALEDLAEILNLETLPKRIEGYDISHIQGSNAVASQVVFIDGVPAQQY 438

Query: 412 YRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           YR + +    +K    DD A +  V+ RRF   +K ++N              WPD++++
Sbjct: 439 YRHYKIKNPSIKVGHSDDFASLAEVIIRRFQSSVKGKKNQQ-----------DWPDLIMI 487

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQLSA   VLKK+++ ++ T++S+AK  +     E F   + + L  +   P +  
Sbjct: 488 DGGKGQLSAVVKVLKKMDLLDKFTVVSLAKQRE-----EIFLPGESQPLPTHAEQPGVQL 542

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           ++RLRDEAHRFA++ HR++R  K+  S LDEI G+G  R++ LL  F ++  I  +S + 
Sbjct: 543 LRRLRDEAHRFAVSFHRQQRLSKSRRSRLDEIPGLGFSRQKQLLAHFRSLDYIREASVKQ 602

Query: 589 LASIEGISKKIACKIYNHFHK 609
           L  + GI  ++A  IY++FH 
Sbjct: 603 LQEVPGIGPQLAQTIYDYFHP 623


>gi|209695581|ref|YP_002263510.1| excinuclease ABC subunit C [Aliivibrio salmonicida LFI1238]
 gi|226698343|sp|B6EI86|UVRC_ALISL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|208009533|emb|CAQ79825.1| UvrABC system protein C (excinuclease ABC subunit C) [Aliivibrio
           salmonicida LFI1238]
          Length = 608

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 202/616 (32%), Positives = 320/616 (51%), Gaps = 31/616 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M +    V+YVGKA +L+KR+ SY  SN  + +   +++ I  I  TVT 
Sbjct: 12  SVTHQPGVYRMYNAEAEVIYVGKAKDLKKRLSSYFRSNIPSEKTKALVTHIAQIDVTVTH 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LE N IK+  P++N+LLRDDKS+PYI I++ HK P +  HR +   +G YFGP
Sbjct: 72  TETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFISN-HKHPRISIHRGTKRKKGEYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           +    AV  +++ +Q+ F +R C DSV+ +R RPCL+ QI RC  PC    IS E Y E 
Sbjct: 131 YPDSGAVRDSLHLIQKLFPIRQCEDSVYANRHRPCLMHQIGRCLAPCVKGIISDEDYAEQ 190

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
               + FL G +  + + +   M  A+   ++E A   RD++ ++  +Q          +
Sbjct: 191 TEFIRLFLQGKDRQVIQSLVEQMEGASQALNFEKAATIRDQIQSMRRVQEQQYVSDESSD 250

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-- 298
            +D         LACI       G+  G+ +FF K  +++   ++ S FL Q+Y +    
Sbjct: 251 DLDVLGFTIENGLACIHLLMIRHGKILGSRSFFPKIPAKTEKEEVFSSFLTQYYLNHSQG 310

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  ++ S E E   L +          +    PK  + R + + A  NA  + T K 
Sbjct: 311 RTIPNRVITSFEFESEGLEQALTELSGRKVLFQLNPKGMKGRYL-KLADTNALSALTSKA 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + +++     K   +  +L    +R+E +D SH MG   V   VV  + G VK++YR++N
Sbjct: 370 NHKLTVYQRFKQLEEALSLA-SIQRMECFDISHTMGEKTVASCVVFNQEGPVKSEYRRYN 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M  VLERR+S+ +  ++                PD+V +DGGKGQL
Sbjct: 429 I--TGITGGDDYAAMAQVLERRYSKQLDIDK---------------IPDIVFIDGGKGQL 471

Query: 477 SAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           + A  V+++   +   R  ++ IAKG  R  G+E      GE   +    P L+ IQ +R
Sbjct: 472 NRAYDVIRQHWGDWPKRPLLLGIAKGVTRKHGLETLVKITGEEFSMPSDSPALHLIQHIR 531

Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE+H  AI+ HR +R K    S L  I G+GP R++ LLQ  G ++ + ++S E ++ + 
Sbjct: 532 DESHNHAISGHRAQRAKVRKTSTLQHIEGVGPKRRQALLQYLGGLQELKKASVEEISKVP 591

Query: 594 GISKKIACKIYNHFHK 609
           GIS+ +A KI +   +
Sbjct: 592 GISRSLAEKIQDALKQ 607


>gi|289432901|ref|YP_003462774.1| excinuclease ABC subunit C [Dehalococcoides sp. GT]
 gi|288946621|gb|ADC74318.1| excinuclease ABC, C subunit [Dehalococcoides sp. GT]
          Length = 607

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 213/613 (34%), Positives = 332/613 (54%), Gaps = 27/613 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY M +  G ++YVGKA  L+ R+KSY    ++ T +   ++SQIN + + +T
Sbjct: 12  SLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPSHLTPKTCQLVSQINELEYLIT 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EAL+LE N+IKR +P FN+ L+DDK FPY+ IT   K P +Y  R  +   G YFG
Sbjct: 72  GSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYITRSMADDGGRYFG 131

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFA+  +V  T+  L+  F  RSC  +    R+RPCL + I +C  PCTG+IS   Y   
Sbjct: 132 PFANTRSVRHTLQVLKELFRFRSCNRTEPEKRSRPCLEYDIHQCLSPCTGKISKSDYDHL 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYN 240
           + +A  FL G    + + + R MN+A+ + DYE+A + RD++A++  +         +  
Sbjct: 192 ISQAILFLEGKQDQVLKLLIRLMNEASARLDYETAALRRDQIASIKEVIEGQQLAARVTG 251

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299
             D  +     +L+ +Q  F   G+  G  +F L+   E     ILS F +QFY      
Sbjct: 252 EQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFCLQGTREEKPGDILSEFAKQFYHSSTQI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355
           P  I+      +  +LE    ++ G KV ITV  +G+ +++I     NA     ++  + 
Sbjct: 312 PPKIVTQYPVSDREILEKWLSQRRGDKVHITVGLRGQPKELINIVAENAREQLKQARIKN 371

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS+ ++    L +      L   P+RIE YD S+I G +AVG MVV       K  YR+F
Sbjct: 372 LSSSVTLTDALAELQTALGLSLPPQRIEGYDISNIQGTNAVGSMVVFENGKPQKAHYRRF 431

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    VK  DD +M++ V+ RRF ++ + +            SF   P ++++DGGKGQ
Sbjct: 432 RIKT--VKGADDFSMLKEVISRRFGRVHRED---------AGESFARLPSLMLIDGGKGQ 480

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           LS+ +  L KL +E +  +I +AK  +     E +   K E + L    P L  +QR+RD
Sbjct: 481 LSSVKDALDKLGLEGQ-AVIGLAKEFE-----EIYLPHKPEPIRLAANSPALQLLQRVRD 534

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFA+  H   R+K+   S LD I G+GP R+RLL+++FG+V  I ++S + L+ ++G
Sbjct: 535 EAHRFALGYHLHIRQKSGLTSALDGIPGVGPSRRRLLIKTFGSVAGIRQASFDELSQVKG 594

Query: 595 ISKKIACKIYNHF 607
           I++ +A  I    
Sbjct: 595 INQALAISIKELL 607


>gi|197302421|ref|ZP_03167476.1| hypothetical protein RUMLAC_01149 [Ruminococcus lactaris ATCC
           29176]
 gi|197298319|gb|EDY32864.1| hypothetical protein RUMLAC_01149 [Ruminococcus lactaris ATCC
           29176]
          Length = 622

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 200/620 (32%), Positives = 324/620 (52%), Gaps = 21/620 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N + +I  M++ I    +
Sbjct: 11  ELKKLPGRPGVYIMHDEKDHIIYVGKAISLKNRVRQYFQSSYNKSVKIQQMVTHIRRFEY 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDK++P+I +T     P +   R     +  
Sbjct: 71  IVTDSELEALVLECNLIKEHRPKYNTMLMDDKAYPFIKVTTGETFPRVLLARKMVKDRAR 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV  TI+ + + + +RSC  ++ R   + RPCL + I +C  PC G IS +
Sbjct: 131 YFGPYTSSQAVRDTIDLIHKLYHVRSCNRNLPRDTGKERPCLNYHIHQCDAPCQGYISKD 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y + + E  +FL+G    + +++   M  A+   ++E AI +R+ L ++  +       
Sbjct: 191 EYRKSIDEVIRFLNGNFDGILKELEEKMQAASEALEFEKAIEYRELLNSVKKVAQKQKIT 250

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           DS     D  ++   ++ A +Q  F   G+  G   F+L+     T A+IL  F++Q+Y 
Sbjct: 251 DSSGEDRDVLAVACQEDDAVVQVFFIRGGRLIGRDHFYLRISKGETKAEILDSFIKQYYA 310

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  ++L EE EE +LLE     + G KV I +PK+G K K++E A  NA      
Sbjct: 311 GTPFIPGELMLQEELEEQALLEEWLSTKRGQKVTIRIPKKGTKEKLVELAGENAQLVLNK 370

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      +  I  R+E YD S+  G  +VG M+V       +N
Sbjct: 371 DKERLKREEGRTIGAVKEIAALLGMERIV-RMEAYDISNTNGFESVGSMIVYENGKPKRN 429

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN-FHPKKQEYSFPSWPDVVIL 469
            YRKF +    VK  +D A MR VL RRF   +K +E L       Q  SF ++PD++++
Sbjct: 430 DYRKFKIKS--VKGPNDYASMREVLTRRFQHGLKEKEELRKKGEDSQLGSFTAFPDLILM 487

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++ A  VL +L++   I +  + K                  + ++        
Sbjct: 488 DGGRGQVNIALQVLDELHL--NIAVCGMVKDDHHRTRG---LYYNNIEIPIDRDSEAFRL 542

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I R++DEAHRFAI  HR+ R K   +S LD+I GIG  R++ L++ F ++  I  +S E 
Sbjct: 543 ITRIQDEAHRFAIEYHRQLRGKGQVHSVLDDIPGIGSARRKALMRHFLSLDAIRDASVEE 602

Query: 589 LASIEGISKKIACKIYNHFH 608
           LA I  +++K A  +Y   H
Sbjct: 603 LAKIPSMNQKAAESVYEFLH 622


>gi|284031184|ref|YP_003381115.1| excinuclease ABC subunit C [Kribbella flavida DSM 17836]
 gi|283810477|gb|ADB32316.1| excinuclease ABC, C subunit [Kribbella flavida DSM 17836]
          Length = 681

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 193/629 (30%), Positives = 312/629 (49%), Gaps = 42/629 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P+ PGVY+  D AGRV+YVGKA NL+ R+ SY     N   R   M++    + +TV 
Sbjct: 13  SIPDSPGVYRFSDSAGRVIYVGKAKNLRARLSSYFQDLANLHPRTQSMVTTAAKVDWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVE+L LE + IK   PRFN+  RDDKS+P++ IT     P +   R        YFG
Sbjct: 73  GTEVESLQLEYSWIKEYDPRFNVKYRDDKSYPWLAITLNEDYPRVMVGRGQKKKGIRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F +RSC+  VF       RPCLL  I +C+ PCTG++S E++
Sbjct: 133 PYSHAWAIRETVDLLLRVFPMRSCSKGVFNRHRQIGRPCLLGYIGKCAAPCTGQVSQEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              V +   FLSG       ++ + M  A  + +YE A   RD LAAL      N  +  
Sbjct: 193 RRIVEDFSAFLSGQTATYVRRLEKEMKAAAAELEYERAAKMRDDLAALEKALAKNAVVLG 252

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES---TNAQILSYFLRQFYTD 296
           +  D   +  +++   +    F+    R         D      T   ++S F++Q Y  
Sbjct: 253 DGTDTDVVALSEDPLEVAVQIFYVRGGRIRGQRGWIADKADGTATTGDLVSRFIQQMYAG 312

Query: 297 K---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
           +     P  IL+    ++ + L     +  G +V I VP++G+K+ ++E    NA ++ T
Sbjct: 313 EAADAIPREILVPVVPDDEAALTEWLSQLRGSRVAIRVPQRGDKKALMETVERNALQTLT 372

Query: 354 QKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
              +   S        L++      LP  P R+E YD S++ G   V  MVV  +    K
Sbjct: 373 MHKTKRASDLTTRNQALEEIQAALDLPEAPLRLECYDVSNLQGTEVVASMVVFEDGLPRK 432

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK--------------- 454
           ++YR+F +    V+ Q+D A +  VL RRF +L+     L   P                
Sbjct: 433 SEYRRFVIRG--VEGQNDVASIAEVLTRRFKRLLDERATLTGDPAADGADEPDAAAALID 490

Query: 455 ---KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
               +   F   P +V++DGG  Q++AA+  + +L +   I +  +AK  +     E + 
Sbjct: 491 PETGRAKKFSYAPGLVVVDGGPPQVAAARQAMDELGL-GDIPVCGLAKRLE-----EVWL 544

Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRL 570
             + + ++ +     LY +QRLRDEAHRFAIT HR RR K+   S LD++ G+G +R++ 
Sbjct: 545 PDEQDPVIFSRTSEGLYLLQRLRDEAHRFAITHHRNRRSKSMVESVLDDVPGLGEVRRKT 604

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKI 599
           LL+ FG+++ +  ++ + +A + G  ++ 
Sbjct: 605 LLRHFGSLRKLREATVDEVAGLPGFGRRT 633


>gi|254520586|ref|ZP_05132642.1| excinuclease ABC subunit C [Clostridium sp. 7_2_43FAA]
 gi|226914335|gb|EEH99536.1| excinuclease ABC subunit C [Clostridium sp. 7_2_43FAA]
          Length = 622

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 193/617 (31%), Positives = 328/617 (53%), Gaps = 19/617 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61
            + +PE PGVY M +  G ++YVGKA  L+ R++SY   S NH+ ++  M+  I+   + 
Sbjct: 8   LKNLPEKPGVYIMKNSLGEIIYVGKAKILKNRVRSYFQHSKNHSEKVKVMVKNISEFEYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +E+EAL+LE N+IK+  PR+NI L+DDK +P+I IT     P ++  R  +     Y
Sbjct: 68  VTDSEMEALILECNLIKKHSPRYNIALKDDKFYPFIKITTNDDYPRVFVTRKYAKDGAKY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEK 179
           FGP+ +  AV +TI  + + F +R+C   +     + RPCL + IK+C  PC G ++ E+
Sbjct: 128 FGPYTNGTAVYETITLINKIFPIRTCKLLINEGGEKVRPCLNYHIKKCIAPCAGYVTKEQ 187

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E +++    L+G +  + + + ++M  A++  ++E A  +RD++ A+  I        
Sbjct: 188 YSEMINDIMDILNGKDKTIIKTLKKDMEDASMNLEFEKAAKYRDKILAIEAIVEKQKIFK 247

Query: 240 NR---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++Y ++  +CIQ  F   G+  G   F  +  ++    ++L  F+  FY  
Sbjct: 248 TMEGDEDFINIYQDEKDSCIQIFFSREGKITGREHFIFENTADDKIGEVLEDFITSFYGG 307

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
                  +   + E++ L+E     + G K  I +P++G+K+ ++E    NA     +  
Sbjct: 308 TAKIPRTIYVPDIEDSELIEDFLTIKRGAKAWIKIPQKGQKKDMLEMVRNNAKITLEQFK 367

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            + L  +  +++ L++      L   P RIE YD S+I G  +VG MVV  E     + Y
Sbjct: 368 DKFLKEKEVNRISLEELQYLLDLDESPFRIEAYDISNIQGVDSVGTMVVFEEGKSKNSDY 427

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILDG 471
           R+F +    VK  +D   MR +LERRFS  ++  ++    +       F S+PD++++DG
Sbjct: 428 RRFKIKS--VKGANDYDSMREILERRFSHGLEEIKKIQERNLNFSSGKFSSFPDLIMMDG 485

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQ++ A  VL+KLN+   I +  + K  K         +   + L++N    ++  I+
Sbjct: 486 GKGQVNVALEVLEKLNIS--IPVCGLVKDDKHQTRG---IIYNNKELIINRSSNLMQMIR 540

Query: 532 RLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R++DE HRFAIT HR  R K+  +S L++I  +G  R+R LL  FG+V+ I  ++ E L 
Sbjct: 541 RIQDEVHRFAITYHRTLRDKRTLHSILEDIPNVGEKRRRNLLMKFGSVENIKNATLEELL 600

Query: 591 SIEGISKKIACKIYNHF 607
               I KK A  I ++F
Sbjct: 601 ETPSIDKKAAQSIVDYF 617


>gi|299531630|ref|ZP_07045035.1| excinuclease ABC subunit C [Comamonas testosteroni S44]
 gi|298720346|gb|EFI61298.1| excinuclease ABC subunit C [Comamonas testosteroni S44]
          Length = 650

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 209/642 (32%), Positives = 321/642 (50%), Gaps = 46/642 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D AG +LYVGKA NL++R+ SY   ++   RI HM+S+I  +  TV  +
Sbjct: 16  LPPLPGVYRYFDAAGVLLYVGKAINLKRRVSSYFQKDHGGTRIGHMVSKIARLETTVVRS 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT------DKH------KIPALYKHRD 113
           E EALLLE N+IK L P++NIL RDDKS+PY+ IT       K       + P +  +R 
Sbjct: 76  EAEALLLENNLIKTLYPKYNILFRDDKSYPYLKITGVAHRDGKEGEPAFQEFPRIAYYRG 135

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
           +   +  YFGP+ S  AV+++I  LQ+ F LR+C D+VF +R+RPCLL+QIKRC+GPC  
Sbjct: 136 AVDKKHRYFGPYPSAWAVKESIQLLQKVFRLRTCEDTVFANRSRPCLLYQIKRCTGPCVD 195

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS E Y   V  A+  L G    L +++   M   + K ++E A   R++L ALS + +
Sbjct: 196 LISPEAYALDVRNAEAMLRGETSELLQQLEARMMAHSDKLEFEQAAEVRNQLTALSRVLH 255

Query: 234 HNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--------- 281
                       D  ++      AC+       G++ G   +F     ++          
Sbjct: 256 QQAIETTDDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPANLGDAASVYSSEEEV 315

Query: 282 ---------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
                       +L  F+ Q Y     P  +++S   E+  +      +Q G ++ +   
Sbjct: 316 DAAAEARPVEELVLEAFIAQHYVGVAVPPTLVVSHPVEKRLV--ELLTEQTGVRITVVQQ 373

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSH 389
            + ++R  +E A  NA     + L+ E S Q   +   +   LP        IE +D SH
Sbjct: 374 PREQRRIWLEMAQKNADIQLARLLAEEGSQQARTRALAEALDLPVENLDELTIECFDISH 433

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G S     VV   +    + YR+FN+    +   DD A MR VL RR+  + + +   
Sbjct: 434 TSGESTKASCVVFHHHKMQSSDYRRFNIEG--ITGGDDYAAMRQVLTRRYKPVAEAQREA 491

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                      P  PD+V++DGGKGQ+S A+ V  +L ++    I+ + KG  R  G+E+
Sbjct: 492 GGAELT--GKQPHLPDLVLVDGGKGQVSMAREVFTELGLDLS-RIVGVEKGEGRKVGLEE 548

Query: 510 FFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPL 566
                G + + L      L  + ++RDEAHRFAIT  R  R K     S L++I G+GP 
Sbjct: 549 LVFADGRDKVYLGHDSAALMLVAQIRDEAHRFAITGMRAARAKVRTGSSSLEDIAGVGPK 608

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++  LLQ FG V+ ++ +S + L ++EGIS  +A +IY   H
Sbjct: 609 KRARLLQRFGGVRGVADASVDDLMTVEGISATLAEEIYKALH 650


>gi|262274270|ref|ZP_06052081.1| excinuclease ABC subunit C [Grimontia hollisae CIP 101886]
 gi|262220833|gb|EEY72147.1| excinuclease ABC subunit C [Grimontia hollisae CIP 101886]
          Length = 589

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 206/607 (33%), Positives = 332/607 (54%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M+D +G ++YVGKA +L+KR+ SY  +N    +   ++  I N+  T+T TE EAL+LE 
Sbjct: 1   MMDASGEIIYVGKAKSLKKRLSSYFRANVSGEKTRALVKNIANVEVTITHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N+IK+  PR+N+LLRDDKS+PYI ++   K P L  HR +   +G YFGPF    AV ++
Sbjct: 61  NLIKQHLPRYNVLLRDDKSYPYIFLSAS-KHPRLSVHRGAKKRKGEYFGPFPDAGAVRQS 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C DSV+ +RTRPCL++QIKRC+GPC    I+ E+Y E V+  + FL G
Sbjct: 120 LYLLQKIFPVRQCEDSVYANRTRPCLMYQIKRCAGPCVKGIITDEEYAELVNFTRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250
            +  +   +   M  A+    +E A  +RD++ AL  +Q       +  D      +   
Sbjct: 180 KDRQVITTLVEKMESASQSLAFEKAAQYRDQIQALRRVQEQQFVSQDSDDDLDAIGVSIE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306
             +ACI   F   G+  G+ ++F K  +++   +++S F+ QFY         P +IL+S
Sbjct: 240 NGIACIHVLFLRQGKVLGSRSYFPKMPADTGVNELVSSFIGQFYIKQAEGNTIPSSILIS 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           ++  EE   L  +  +  G KV +    +G + + ++ A  NA  + T K++ +++    
Sbjct: 300 QDLGEELHSLATALSEIAGRKVSVQCKPRGTRARFLKLAQTNAATALTSKINHKMTIHNR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
               +    L  +  R+E +D SH MG   V   VV   +G +K +YR++N+    +   
Sbjct: 360 FSVLSDTLDLEPVK-RMECFDISHTMGEQTVASCVVFNHDGPLKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+S+ +  ++                PD++++DGGKGQL+ A  V+K 
Sbjct: 417 DDYAAMAQVLERRYSKQVDPDK---------------IPDIILIDGGKGQLNRAWEVVKP 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           L  +      ++ +AKG  R  G+E      GE   L    P L+ IQ +RDE+H  AI+
Sbjct: 462 LMADWPKHPLMLGVAKGTTRRPGLETLIKVSGEEFSLPSDSPALHLIQHIRDESHNHAIS 521

Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K   S  L+EI G+GP R++ LL+  G ++ + R+S E +A + GIS+ +A K
Sbjct: 522 GHRAKRAKVRKSSVLEEIEGVGPKRRQALLKYLGGIQELKRASVEEIAKVPGISRVLAEK 581

Query: 603 IYNHFHK 609
           I++   +
Sbjct: 582 IHSSLQQ 588


>gi|220912579|ref|YP_002487888.1| excinuclease ABC subunit C [Arthrobacter chlorophenolicus A6]
 gi|254764920|sp|B8H7L9|UVRC_ARTCA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|219859457|gb|ACL39799.1| excinuclease ABC, C subunit [Arthrobacter chlorophenolicus A6]
          Length = 674

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 191/648 (29%), Positives = 310/648 (47%), Gaps = 54/648 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  GRV+YVGKA +L+ R+ SY  +      +   M+   +++ +TV 
Sbjct: 13  EIPTNPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFANPAGLLPKTYAMVHAASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+E+L LE   IK  KPRFN++ RDDK++PY+ +T   K P +   R        YFG
Sbjct: 73  GSELESLQLEYTWIKEFKPRFNVVFRDDKTYPYLAVTLGEKYPRVQVMRGDKRKGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T+++L R F +RSC+  VF+      RPCLL  I +CS PC G IS E +
Sbjct: 133 PYT-AGAIRETMDTLLRVFPVRSCSAGVFKRAESSGRPCLLGYIDKCSAPCVGRISPEDH 191

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F+ G       K+ + M  A  + DYE A   RD + AL  +   N  +  
Sbjct: 192 RALAEDFCAFMGGEAKRFTNKLEKQMAAAVARLDYEQAARIRDDITALRKVFERNAVVLA 251

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L+ ++  A +Q      G+ RG   + ++   + T   ++ + L+Q Y + 
Sbjct: 252 EDTDADVFALHEDELEAAVQVFHVRGGRIRGQRGWVVEKVEDFTTPDLVEHLLQQVYGED 311

Query: 298 -----PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+         L        G +V + VP++G+K  ++     NA  + 
Sbjct: 312 GETHGRLPREVLVPVAPSNAEELTEWLSGIRGARVDVRVPQRGDKAALMSTVRENAEHAL 371

Query: 353 TQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
               +            L++  +   LP    RIE +D SH+ G + V  MVVV +    
Sbjct: 372 KLHKTRRAGDLTVRSQALQELQEALDLPVPLLRIECFDVSHVQGTNVVASMVVVEDGLPK 431

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP--------------- 453
           K+ YRKF++        DD A M  VL RRF   ++++                      
Sbjct: 432 KSDYRKFSITGP--AASDDTAAMHDVLTRRFRHYLQDKSAQVDEDVLEAGTAEAAAEAAA 489

Query: 454 -------------KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                           +  F   P++V++DGG+ Q++AA   L  L +++ + ++ +AK 
Sbjct: 490 DAAAEAAVADTTTPIPKTKFAYPPNLVVVDGGQPQVNAAARALADLGIDD-VYVVGLAKR 548

Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDE 559
            +     E +       ++L      LY +QR+RDEAHRFAI+ HR++R KA   S LD 
Sbjct: 549 LE-----EVWLPDSDFPVILPRTSQGLYLLQRIRDEAHRFAISFHRQKRGKAMTVSALDG 603

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + G+G  +++ LL  FG+VK +  ++PE LA  +GI   +A  I +HF
Sbjct: 604 VPGLGASKRKALLAHFGSVKGVKAATPEELAQAKGIGPALAAAIVSHF 651


>gi|293606418|ref|ZP_06688777.1| excision endonuclease subunit UvrC [Achromobacter piechaudii ATCC
           43553]
 gi|292815176|gb|EFF74298.1| excision endonuclease subunit UvrC [Achromobacter piechaudii ATCC
           43553]
          Length = 609

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 321/614 (52%), Gaps = 28/614 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+ LD AG V+YVGKA +L+KR+ SY   N  + RI  M+S++  +  TVT 
Sbjct: 13  DLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVSKVARLEVTVTR 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+IK LKPR+NIL RDDKS+PY+LIT  H+ P +  +R ++  +G +FGP
Sbjct: 73  SEAEALILENNLIKSLKPRYNILFRDDKSYPYLLIT-GHEWPRIAYYRGATNKRGQFFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +  AV +TI  LQ+ F LR+C D+VF +R+RPCLL QI RCS PC G I +E+Y   V
Sbjct: 132 FPNAWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGAIEAEEYQRDV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL+G   ++  +I   M QA ++  +E A   RD++ +L+ + +           
Sbjct: 192 QRAVRFLNGEAKDVMGEIETRMQQAAMELRFEEAAALRDQMGSLARVLHQQTMENTSGED 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  ++       C+       G++ G   FF          Q+L  F+ Q YTD   P 
Sbjct: 252 TDVIAVAIAGGKVCVNLAMVRGGRHLGDKPFFPTHAEGEAAPQVLEAFIAQHYTDNAMPP 311

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++ S    +  L+ +   +  G   ++    QG +R  +EQA  NA  +  + L+   +
Sbjct: 312 VLVCSHALPDPELINLLIEQAGGRPTRLLTRPQGARRSWLEQATKNAEMALARALTESGA 371

Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                    +   L          RIE +D SH  G +     VV   +    + YR++N
Sbjct: 372 RAARTLALAEALDLDTDEAALDALRIECFDISHTAGEATQASCVVFEHHDMQPSLYRRYN 431

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A MR VL RRF+++   +                 P +V++DGGKGQ+
Sbjct: 432 I--AGITPGDDYAAMRQVLTRRFAKVADGD--------------APMPGLVLIDGGKGQV 475

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535
             A+ V  +L ++ + T++ +AKG  R  G+E          + L      L  I ++RD
Sbjct: 476 EVARKVFVELGLDIQ-TLVGVAKGEGRKVGLETLVFADERPPVALGGESAALMLIAQVRD 534

Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT  R RR K    S L+EI G+G  R++ LL  FG    ++ +S E LAS++G
Sbjct: 535 EAHRFAITGMRARRAKTRNVSRLEEIEGVGARRRQRLLARFGGFSGVASASIEDLASVDG 594

Query: 595 ISKKIACKIYNHFH 608
           IS+ +A +IY    
Sbjct: 595 ISQDLAERIYEALR 608


>gi|291550744|emb|CBL27006.1| excinuclease ABC, C subunit [Ruminococcus torques L2-14]
          Length = 617

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 201/619 (32%), Positives = 323/619 (52%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D   +++YVGKA +L+ R++ Y  S+ N   +I  M++ I    +
Sbjct: 11  ELKKLPGRPGVYLMHDETDQIIYVGKAISLKNRVRQYFQSSRNKGVKIEQMVTHIRRFEY 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDK++P+I +T   + P +   R     +  
Sbjct: 71  IVTDSELEALVLECNLIKEHRPKYNTMLMDDKAYPFIKVTTGEEYPRVMLARQMKKDKAR 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV  TI+ + + + +RSC  S+ +   + RPCL + IK+C  PC G IS E
Sbjct: 131 YFGPYTSSQAVRDTIDLIHKLYHIRSCNRSLPKDIGKERPCLNYHIKQCEAPCQGYISQE 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y + + E  +FL+G    + + +   M  A+   ++E AI +R+ L ++  +       
Sbjct: 191 EYRKSIDEVIRFLNGNFDMILKDLEDKMMAASEALEFEKAIEYRELLNSVKKVAQKQKIT 250

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           DS     D  ++      A +Q  F   G+  G   F+L+   E   ++IL+ F++Q+Y 
Sbjct: 251 DSSGEDRDVMAVACQDEDAVVQVFFIRGGRLIGRDHFYLRISEEDKKSEILNSFIKQYYA 310

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  ++L EE EE  LLE     + G KV I VPK+G K K++E A  NA      
Sbjct: 311 GTPFLPGELMLPEEIEEQELLESWLSAKKGQKVTIRVPKKGTKEKLVELAEENARMVLSK 370

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+      L  I  R+E YD S+  G  +VG MVV  +    +N
Sbjct: 371 DKERLKREEGRTIGAVKEIASLLGLEQIV-RMEAYDISNTNGFESVGSMVVYEKGKPKRN 429

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    VK  DD A MR VL RRF+  +K  E        +   F ++PD++++D
Sbjct: 430 DYRKFKIKS--VKGPDDYASMREVLTRRFTHGLKEREE-----NAEAGKFTTFPDLILMD 482

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG+GQ++ A  VL +L +   I +  + K                  + ++        I
Sbjct: 483 GGRGQVNIALQVLDELKL--NIPVCGMVKDDNHRTRG---LYYNNVEIPIDRNSEAFKLI 537

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HR+ R K   +S LD+I GIGP R++ L++ + ++  I  ++ E L
Sbjct: 538 TRIQDEAHRFAIEFHRQLRGKGQVHSVLDDIEGIGPARRKALMRHYLSLDAIRSATVEEL 597

Query: 590 ASIEGISKKIACKIYNHFH 608
           A +  +++K A  +Y  FH
Sbjct: 598 AQLPSMNEKAAESVYQFFH 616


>gi|333027927|ref|ZP_08455991.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071]
 gi|332747779|gb|EGJ78220.1| putative excinuclease ABC subunit C [Streptomyces sp. Tu6071]
          Length = 907

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 183/623 (29%), Positives = 304/623 (48%), Gaps = 38/623 (6%)

Query: 23  LYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
           +YVGKA +L++R+ +Y     +   R   M++   ++ +TV  TEVEAL LE + IK   
Sbjct: 2   IYVGKAKSLRQRLANYFQDLAHLHPRTRTMVTTAASVEWTVVSTEVEALQLEYSWIKEYD 61

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRT 141
           PRFN+  RDDKS+PY+ +T   + P     R +      YFGP+    A+  T++ L R 
Sbjct: 62  PRFNVKYRDDKSYPYLAVTMNEEFPRAQVMRGAKRKGVRYFGPYGHAWAIRDTVDLLLRV 121

Query: 142 FFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNL 198
           F +R+C+  VF++     RPCLL  I +CS PC G IS E + +   +   F++G   + 
Sbjct: 122 FPVRTCSAGVFKNAARTGRPCLLGYIDKCSAPCVGRISPEDHRDLAEDFCHFMAGHTGHY 181

Query: 199 KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLAC 255
             ++   M +A    +YE A   RD + AL+     +  +       D  +L  ++  A 
Sbjct: 182 LRRLEERMTEAAEDMEYERAARLRDDIGALTRAMEKSAVVLADATDADLIALAQDELEAA 241

Query: 256 IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENILLSEEAEET 312
           +Q      G+ RG   +        T A ++ + L+Q Y ++     P+ +L+    E  
Sbjct: 242 VQIFHVRGGRVRGQRGWVTDKVEAVTTADLVEHALQQLYGEERGDAVPKEVLVPALPEPV 301

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS----HQMILKD 368
             ++    ++ G +V + VP++G+KR ++E    NA +S     +   S        L++
Sbjct: 302 QPVQEWLSERRGAQVSLRVPQRGDKRALMETVERNAQQSLALHKTKRASDLTTRSRALEE 361

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
                 L  +P RIE YD SH+ G   V  MVV  +    K++YR+F +     + QDD 
Sbjct: 362 IAAALDLDGVPLRIECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIKG--FQGQDDV 419

Query: 429 AMMRMVLERRFSQLIKNE---------------ENLNFHPKKQEYSFPSWPDVVILDGGK 473
             M  V+ RRF + +                  E        +   F   P ++++DGG+
Sbjct: 420 RSMHEVITRRFRRYLAERERTGEWTEEELDGPVEPGGLDEDGRPKRFAYPPQLLVVDGGQ 479

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q++AA+  L +L +++ + +  +AK  +     E +   + + +VL      LY +QR+
Sbjct: 480 PQVAAARRALDELGIDD-VAVCGLAKRLE-----EVWVPGEEDPVVLPRSSEGLYLLQRV 533

Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT  R +R K     PLDE+ G+G  RK+ LL+ FG+VK +  ++ E +  +
Sbjct: 534 RDEAHRFAITYQRSKRAKRFRAGPLDEVPGLGQTRKQALLKHFGSVKKLRAATIEQICEV 593

Query: 593 EGISKKIACKIYNHFHKNTSHTP 615
            GI +K A  I   F ++    P
Sbjct: 594 PGIGRKTAETILATFARSEPGAP 616


>gi|315498619|ref|YP_004087423.1| excinuclease abc, c subunit [Asticcacaulis excentricus CB 48]
 gi|315416631|gb|ADU13272.1| excinuclease ABC, C subunit [Asticcacaulis excentricus CB 48]
          Length = 639

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 264/610 (43%), Positives = 368/610 (60%), Gaps = 16/610 (2%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           + PGVY+M+     VLYVGKA +L+KRI  Y     H  RI  M+    ++    T TE 
Sbjct: 34  DKPGVYRMIGENDEVLYVGKAKSLKKRILQYAQGRVHAQRIARMVYLTRSMIIVRTQTEG 93

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLEA +IK LKPR+N+LLRDDKSF  IL+   H    + KHR +  IQG YFGPFAS
Sbjct: 94  EALLLEARLIKALKPRYNVLLRDDKSFAEILVRKDHAAAQITKHRGAHAIQGEYFGPFAS 153

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             AV +T+++LQR F LR+C DSV+  RTRPC+L QI+RCS PCTGEIS E Y   V +A
Sbjct: 154 TQAVNRTLDTLQRAFLLRTCTDSVYASRTRPCMLHQIRRCSAPCTGEISLEDYAGLVGQA 213

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
           + FL G +  + + + + M  A+   D+E A   RDR+ AL+H+   +         D F
Sbjct: 214 EAFLKGRSRVVIDDLTKRMMNASDDMDFEKAAHLRDRVRALNHVSMTSSIGIGEAEADVF 273

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLK-----TDSESTNAQILSYFLRQFYTDKPCP 300
           ++      AC+QT FF  GQN G   +F +      D++S   +IL  FL QFY D+P P
Sbjct: 274 AVVSEGGAACVQTIFFRAGQNWGDRAYFPRVPDSGEDADSAEGEILDAFLGQFYQDRPVP 333

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + IL+S    E  L+  +   + G KV+I  P++GEK   +  AL NA  +  ++++ + 
Sbjct: 334 KLILVSHPLSEPDLMMEALSLRAGRKVEIHCPRRGEKADAVAHALNNAKAALGRRMAEQS 393

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP- 419
           +   +LK   + F L   P RIE+YDNSH+ G  AVG MVV G  GF+K QYRKF +   
Sbjct: 394 AQSRLLKGVAEAFELAAPPNRIEVYDNSHLGGTHAVGGMVVAGPEGFMKGQYRKFTIRDL 453

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           + +   DD AMMR V  RRF +L    E+               PD+V++DGG+GQL A 
Sbjct: 454 DKMTAGDDYAMMREVFRRRFLRLKNRTESATEEEGFGR------PDLVLVDGGQGQLEAV 507

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             V+++L +E+ I I+ +AKGP R AGME+FF+      ++  + P+LY++QRLRDEAHR
Sbjct: 508 LEVMRELGMED-IRIVGVAKGPDRDAGMERFFMPGRAPFMMEPKSPVLYYLQRLRDEAHR 566

Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           +AI  +R++R  A   +PLDEI GIGP +KR LL +FG+ + + R+  E L  +EGIS+ 
Sbjct: 567 YAIGANRQKRDAAIIKNPLDEIEGIGPRKKRALLAAFGSGREVGRARIEDLRKVEGISEA 626

Query: 599 IACKIYNHFH 608
           +A +IY  FH
Sbjct: 627 LAQRIYAFFH 636


>gi|167745943|ref|ZP_02418070.1| hypothetical protein ANACAC_00638 [Anaerostipes caccae DSM 14662]
 gi|167654458|gb|EDR98587.1| hypothetical protein ANACAC_00638 [Anaerostipes caccae DSM 14662]
          Length = 627

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 194/625 (31%), Positives = 318/625 (50%), Gaps = 21/625 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M +    ++YVGKA  L  R++ Y   + N T +I HM+S I    +
Sbjct: 7   ELKKLPAKPGVYIMHNDKDEIIYVGKAIKLCNRVRQYFQGSRNLTTKIQHMVSHIAYFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +L+DDK++PYI +T   + P +   R     +  
Sbjct: 67  IITDSELEALVLECNLIKEHRPKYNTMLKDDKNYPYIKVTTNEEYPRIMLARRMKQDKCK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+  I  L++ F +R+C+  + +   + RPCL +QIK+C GPC   IS E
Sbjct: 127 YFGPYTSAGAVKDIIELLRKLFKIRTCSRKLPKDIGKDRPCLYYQIKQCEGPCQDYISGE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + + +   FL+G   ++ + +   M QA    ++E A  +R+ L ++  I +     
Sbjct: 187 DYRKSIDQVLSFLNGNYKDVSDMLEEKMKQAAADLEFEQAAEYRNLLKSIGKIADRQKIN 246

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +   D  +    K  A +   F   G+  G   F +  D E+T+ +++S F++QFY 
Sbjct: 247 SYGFENRDIIAFAKEKQDAVVAVFFIRDGKLLGREHFHMTQDEETTDEELMSAFVKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
             P  P  I L    ++  ++E    K+ G +V I +P +GEK +++E A  NA     +
Sbjct: 307 GTPYLPGEIFLECGMDDMEIVEEWLSKKRGGRVHIRIPLRGEKHRLVELAKENASNVLRQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+  +   +     R+E +D S+I G   V  MVV  +    K 
Sbjct: 367 DKEKLKREEKRTIGAVKEIEQLLGIK-GLHRMEAFDISNISGFQTVASMVVFEDGKARKR 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVIL 469
            YRKF L    V   DD   M  VL RR     K  E L    +  E+ SF  +PD++++
Sbjct: 426 DYRKFRLKT--VDGPDDYRSMEEVLTRRLLHGQKEIEELKAKNEDLEFGSFTKFPDLLLM 483

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ AQ VLK L ++  I +  + K                + +    R      
Sbjct: 484 DGGKGQVNVAQRVLKDLKMD--IPVCGMVKDDNHRTRA---LYYNNDEIYFPKRSEAFQL 538

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + R++DEAHRFAI  HR  R K    S LDEI G+GP R++ L++ F  ++ I  ++ + 
Sbjct: 539 VTRIQDEAHRFAIEYHRSLRAKGQVSSVLDEIKGVGPKRRKALMKHFKQIQNIKEATEDE 598

Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613
           +  + G+++K A +IY+ FH +   
Sbjct: 599 IMQVPGMTRKAAKEIYSFFHLSKEE 623


>gi|33593099|ref|NP_880743.1| putative excinuclease ABC subunit C [Bordetella pertussis Tohama I]
 gi|81424947|sp|Q7VWV7|UVRC_BORPE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|33563474|emb|CAE42359.1| putative excinuclease ABC subunit C [Bordetella pertussis Tohama I]
 gi|332382511|gb|AEE67358.1| excinuclease ABC subunit C [Bordetella pertussis CS]
          Length = 609

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 215/614 (35%), Positives = 328/614 (53%), Gaps = 28/614 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+ LD AG  +YVGKA +L+KR+ SY   N  + RI  M++++ ++  TVT 
Sbjct: 13  DLPHLPGVYRHLDAAGEAMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTR 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L+PR+NIL RDDKS+PY+LIT  H  P +  +R +++ +G YFGP
Sbjct: 73  SEAEALLLENNLIKSLRPRYNILFRDDKSYPYLLIT-GHAWPRIAYYRGATSKRGQYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  AV +TI  LQ+ F LR+C D+VF +R+RPCLL QI RCS PC G I +E Y   V
Sbjct: 132 YPNSWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAEDYAHDV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241
             A +FL+G    + ++I   M QA+ +  +E A + RD++ +LS + +     +   + 
Sbjct: 192 QRAVRFLNGEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  ++       C+       G++ G   FF         AQ+L  F+ Q Y D   P 
Sbjct: 252 TDVIAVASAGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPP 311

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++ S    ++ L+ +   +      ++    QG +R  +EQA  NA  +  + L+   +
Sbjct: 312 VLVCSHALPDSGLVGLLAEQGGTRVARVLTRPQGVRRSWLEQAQKNAEMALARALTESGA 371

Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                    +   L    +     RIE +D SH  G +     VV   +    + YR++N
Sbjct: 372 RAGRTLALAEALDLDTDEESLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYN 431

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A MR VL RRF ++   E                 P +V++DGGKGQ+
Sbjct: 432 IVG--ITPGDDYAAMRQVLTRRFGKVTDGE--------------APMPGLVLIDGGKGQV 475

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535
             A+ V  +L ++ + +++ +AKG  R  G+E      G   + L      L  I ++RD
Sbjct: 476 EVARQVFVELGLDIQ-SLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRD 534

Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT  R RR K    S L+EI GIG  R++ LL  FG +  +S +S E LAS+EG
Sbjct: 535 EAHRFAITGMRARRAKTRNVSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEG 594

Query: 595 ISKKIACKIYNHFH 608
           IS+++A +IY+  H
Sbjct: 595 ISQELAVRIYDALH 608


>gi|227504395|ref|ZP_03934444.1| excinuclease ABC subunit C [Corynebacterium striatum ATCC 6940]
 gi|227199043|gb|EEI79091.1| excinuclease ABC subunit C [Corynebacterium striatum ATCC 6940]
          Length = 683

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 186/676 (27%), Positives = 313/676 (46%), Gaps = 78/676 (11%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D   RV+YVGKA NL+ R+ +Y         R   M+    ++ +TV 
Sbjct: 13  TIPTEPGVYKFRDENRRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IKR  PRFN++ RDDK++P + ++    +P  + +R        YFG
Sbjct: 73  ASEVEALQLEYTWIKRFDPRFNVMYRDDKTYPMLAVSVGEAVPRAFFYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV +T++ L R F +R+CA  V+       RPCLL  I +C  PC G +S +++
Sbjct: 133 PYSHAWAVRETLDLLTRVFPMRTCAKGVYNRHERLGRPCLLGYIGKCDAPCIGRVSKDEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V+E   F++G    +  ++ + M +A    ++E A   RD L A++ I      ++ 
Sbjct: 193 RETVNELVSFMNGNTSKVTRELTQRMEEAAENLEFELAARLRDDLGAINKIMEQQAVVFG 252

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------------- 284
                D  +   ++  A +Q      G+ RG   + ++   +    +             
Sbjct: 253 DGTDADLIAFSSDELEAAVQIFHVRNGRIRGQRGWVVERSGDQAPLEPLEEGKPDPGLPA 312

Query: 285 ILSYFLRQFYTD-------------------------------KPCPENILLSEEAEETS 313
           ++  FL QFY+D                                  P  IL+    +E +
Sbjct: 313 LMQNFLIQFYSDAADRQKQELEEDAALNRRGVDQESHTEEHLGNVIPREILVQAMPDEAA 372

Query: 314 LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDF 369
            ++    +  G  V + VP++G+KR ++E    NA     Q          +    L+D 
Sbjct: 373 EVKSLLEQLRGAHVDLRVPQRGDKRSLMETVEKNAKEQLRQHKLKRVGDITARSAALQDI 432

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDC 428
            +   +   P RIE  D SHI G   V  +VV  +    K+ YR++ +       + DD 
Sbjct: 433 QEALGMDQAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRIKEAAGDGRSDDV 492

Query: 429 AMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVILDGGK 473
             +  V  RRF +  ++               +E +     +    F   P + I+DGG 
Sbjct: 493 GSIAEVTRRRFKRHNEDKLANPDEEVEESTFADEKVTEESAEAGRRFAYPPQLFIVDGGA 552

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q++AAQ V  +L + + +T++ +AK  +     E +     E ++L      L+ +Q++
Sbjct: 553 PQVAAAQEVFDELGIVD-VTLVGLAKRLE-----EIWVPGDDEPVILPRNSQALFLLQQI 606

Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT HR++R K   S  LD + G+GP R+  L++ FG+VK +  +S E +A++
Sbjct: 607 RDEAHRFAITYHRQQRSKRMRSSVLDSVPGLGPQRRTDLVKHFGSVKKLKEASVEQIAAV 666

Query: 593 EGISKKIACKIYNHFH 608
           +G   K+A  ++ H H
Sbjct: 667 KGFGPKLASVVFEHLH 682


>gi|317473372|ref|ZP_07932667.1| excinuclease ABC [Anaerostipes sp. 3_2_56FAA]
 gi|316899208|gb|EFV21227.1| excinuclease ABC [Anaerostipes sp. 3_2_56FAA]
          Length = 627

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 194/625 (31%), Positives = 318/625 (50%), Gaps = 21/625 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M +    ++YVGKA  L  R++ Y   + N T +I HM+S I    +
Sbjct: 7   ELKKLPAKPGVYIMHNDKDEIIYVGKAIKLCNRVRQYFQGSRNLTTKIQHMVSHIAYFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +L+DDK++PYI +T   + P +   R     +  
Sbjct: 67  IITDSELEALVLECNLIKEHRPKYNTMLKDDKNYPYIKVTTNEEYPRIMLARRMKQDKCR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+  I  L++ F +R+C+  + +   + RPCL +QIK+C GPC   IS E
Sbjct: 127 YFGPYTSAGAVKDIIELLRKLFKIRTCSRKLPKDIGKDRPCLYYQIKQCEGPCQDYISGE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + + +   FL+G   ++ + +   M QA    ++E A  +R+ L ++  I +     
Sbjct: 187 DYRKSIDQVLSFLNGNYKDVSDMLEEKMKQAAADLEFEQAAEYRNLLKSIGKIADRQKIN 246

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +   D  +    K  A +   F   G+  G   F +  D E+T+ +++S F++QFY 
Sbjct: 247 SYGFENRDIIAFAKEKQDAVVAVFFIRDGKLLGREHFHMTQDEETTDEELMSAFVKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
             P  P  I L    ++  ++E    K+ G +V I +P +GEK +++E A  NA     +
Sbjct: 307 GTPYLPGEIFLECGMDDMEIVEEWLSKKRGGRVHIRIPLRGEKHRLVELAKENASNVLRQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+  +   +     R+E +D S+I G   V  MVV  +    K 
Sbjct: 367 DKEKLKREEKRTIGAVKEIEQLLGIK-GLHRMEAFDISNISGFQTVASMVVFEDGKARKR 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVIL 469
            YRKF L    V   DD   M  VL RR     K  E L    +  E+ SF  +PD++++
Sbjct: 426 DYRKFRLKT--VDGPDDYRSMEEVLTRRLLHGQKEIEELKAKNEDLEFGSFTKFPDLLLM 483

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ AQ VLK L ++  I +  + K                + +    R      
Sbjct: 484 DGGKGQVNVAQRVLKDLKMD--IPVCGMVKDDNHRTRG---LYYNNDEIYFPKRSEAFQL 538

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + R++DEAHRFAI  HR  R K    S LDEI G+GP R++ L++ F  ++ I  ++ + 
Sbjct: 539 VTRIQDEAHRFAIEYHRSLRAKGQVSSVLDEIKGVGPKRRKALMKHFKQIQNIKEATEDE 598

Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613
           +  + G+++K A +IY+ FH +   
Sbjct: 599 IMQVPGMTRKAAKEIYSFFHLSKEE 623


>gi|239500955|ref|ZP_04660265.1| excinuclease ABC subunit C [Acinetobacter baumannii AB900]
 gi|260556323|ref|ZP_05828542.1| excinuclease ABC, C subunit [Acinetobacter baumannii ATCC 19606]
 gi|301345128|ref|ZP_07225869.1| excinuclease ABC subunit C [Acinetobacter baumannii AB056]
 gi|301510711|ref|ZP_07235948.1| excinuclease ABC subunit C [Acinetobacter baumannii AB058]
 gi|301594971|ref|ZP_07239979.1| excinuclease ABC subunit C [Acinetobacter baumannii AB059]
 gi|332854377|ref|ZP_08435329.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6013150]
 gi|332867592|ref|ZP_08437740.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6013113]
 gi|193076161|gb|ABO10776.2| EsvL [Acinetobacter baumannii ATCC 17978]
 gi|260410378|gb|EEX03677.1| excinuclease ABC, C subunit [Acinetobacter baumannii ATCC 19606]
 gi|332728053|gb|EGJ59444.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6013150]
 gi|332733866|gb|EGJ65012.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6013113]
          Length = 602

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 197/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + + PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   VT 
Sbjct: 18  NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++     P +   R     Q G +FG
Sbjct: 78  SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 137

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G +S E Y E 
Sbjct: 138 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 197

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V+ + +FL G    L +++   M QA    ++E A+ +RDRL+ L  +Q           
Sbjct: 198 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299
            D  ++ +   + C+Q      G+  G  ++F          Q+LS F+  FY       
Sbjct: 258 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 316

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++++    +   LE +  +Q+G KV+I    +  + + +E A +N   +   +LS  
Sbjct: 317 PSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNH 376

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
           +          +    P     IE +D SH MG + +   VV  + G  K  YR+F +  
Sbjct: 377 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 434

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR  L RR+ + +                    PD++++DGGKGQL  A
Sbjct: 435 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 473

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             V+++L +E    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHR
Sbjct: 474 MEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHR 531

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR +R K+ + S L+ I G+GP R+R LL  FG ++ + ++S + L  + G+ + 
Sbjct: 532 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 591

Query: 599 IACKIYNHFHK 609
           +A  IY   H+
Sbjct: 592 MARTIYKILHE 602


>gi|221067881|ref|ZP_03543986.1| excinuclease ABC, C subunit [Comamonas testosteroni KF-1]
 gi|220712904|gb|EED68272.1| excinuclease ABC, C subunit [Comamonas testosteroni KF-1]
          Length = 650

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 209/642 (32%), Positives = 320/642 (49%), Gaps = 46/642 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D AG +LYVGKA NL++R+ SY    +   RI HM+S+I  +  TV  +
Sbjct: 16  LPPLPGVYRYFDAAGVLLYVGKAINLKRRVSSYFQKEHGGTRIGHMVSKIVRLETTVVRS 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT------DKH------KIPALYKHRD 113
           E EALLLE N+IK L P++NIL RDDKS+PY+ IT       K       + P +  +R 
Sbjct: 76  EAEALLLENNLIKTLYPKYNILFRDDKSYPYLKITGVAHRDGKEGEPAFQEFPRIAYYRG 135

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
           +   +  YFGP+ S  AV+++I  LQ+ F LR+C D+VF +R+RPCLL+QIKRC+GPC  
Sbjct: 136 AVDKKHRYFGPYPSAWAVKESIQLLQKVFRLRTCEDTVFANRSRPCLLYQIKRCTGPCVD 195

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS E Y   V  A+  L G    L +++   M   + K ++E A   R++L ALS + +
Sbjct: 196 LISPEAYALDVRNAEAMLRGETSELLQQLEARMMAHSDKLEFEQAAEVRNQLTALSRVLH 255

Query: 234 HNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--------- 281
                       D  ++      AC+       G++ G   +F     ++          
Sbjct: 256 QQAIETTDDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPANLGDAASVYSSEEEV 315

Query: 282 ---------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
                       +L  F+ Q Y     P  +++S   E+  +      +Q G ++ +   
Sbjct: 316 DAAAEARPVEELVLEAFIAQHYVGVAVPPTLIVSHPVEKRLV--ELLTEQTGVRITVVQQ 373

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSH 389
            + ++R  +E A  NA     + L+ E S Q   +   +   LP        IE +D SH
Sbjct: 374 PREQRRIWLEMAQKNADIQLARLLAEEGSQQARTRALAEALDLPVENLDELTIECFDISH 433

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G S     VV   +    + YR+FN+    +   DD A MR VL RR+  + + +   
Sbjct: 434 TSGESTKASCVVFHHHKMQSSDYRRFNIEG--ITGGDDYAAMRQVLTRRYKPVAEAQREA 491

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                      P  PD+V++DGGKGQ+S A+ V  +L ++    I+ + KG  R  G+E+
Sbjct: 492 GGAELT--GKQPHLPDLVLVDGGKGQVSMAREVFTELGLDLS-RIVGVEKGEGRKVGLEE 548

Query: 510 FFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPL 566
                G + + L      L  + ++RDEAHRFAIT  R  R K     S L++I G+GP 
Sbjct: 549 LVFADGRDKVYLGHDSAALMLVAQIRDEAHRFAITGMRAARAKVRTGSSSLEDIAGVGPK 608

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++  LLQ FG V+ ++ +S + L ++EGIS  +A +IY   H
Sbjct: 609 KRARLLQRFGGVRGVADASVDDLMTVEGISATLAEEIYKALH 650


>gi|238794053|ref|ZP_04637671.1| UvrABC system protein C [Yersinia intermedia ATCC 29909]
 gi|238726685|gb|EEQ18221.1| UvrABC system protein C [Yersinia intermedia ATCC 29909]
          Length = 588

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 208/606 (34%), Positives = 329/606 (54%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  +   + +   ++  I  I  TVT TE EALLLE 
Sbjct: 1   MYDKTGTVIYVGKAKDLKKRLTSYFRAQVASRKTETLVKNIAQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPLIFLS-ADTHPRLAIHRGAKHEKGEYFGPFPNSYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S ++Y   V   + FLSG
Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVAGLVSDDEYQRQVDYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251
            +  +  ++   M +A+    +E A   RD++ A+  +        +    D   +  + 
Sbjct: 180 KDQQVLTQLISRMEEASKLLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307
            LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
             EE  LL  S  +  G K++I    +G++ + ++ A  NA  +   +LS + +    +K
Sbjct: 300 TLEEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITRLSQQSTIHQRMK 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           +  K   +     R+E +D SH MG   V   VV   NG V+++YR++N+  + +   DD
Sbjct: 360 ELAKILNID-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL+RR+ + + +++                PDV+ +DGGKGQLS A  V   L 
Sbjct: 417 YAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGKGQLSQAFDVFASLT 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   + +  ++ +AKG  R AG+E  F++ +GE   L    P L+ IQ +RD++H  AIT
Sbjct: 462 VPWDKQKPLLVGVAKGSDRKAGLETLFLEAQGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A +  IS+ +A K
Sbjct: 522 GHRQRRSKVKNTSALETIEGVGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581

Query: 603 IYNHFH 608
           IYN   
Sbjct: 582 IYNALK 587


>gi|193213289|ref|YP_001999242.1| excinuclease ABC subunit C [Chlorobaculum parvum NCIB 8327]
 gi|193086766|gb|ACF12042.1| excinuclease ABC, C subunit [Chlorobaculum parvum NCIB 8327]
          Length = 629

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 189/633 (29%), Positives = 300/633 (47%), Gaps = 48/633 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
            +P  PGVY+  + AG V+YVGKA NL+ R++SY +S      +   ++S I ++   +T
Sbjct: 23  SLPTSPGVYRFSNAAGTVIYVGKARNLRNRVRSYFNSQGRQPGKTAVLVSHIADLNVIIT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL+LE N+IK LKPR+N+ L+DDKS+PY++IT+  + P ++  R        YFG
Sbjct: 83  SSEVEALILENNLIKELKPRYNVNLKDDKSYPYVVITN-ERFPRIFLTRQVRRDGSQYFG 141

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSE 178
           P+     +   ++ +   F +RSC   +        + R CL + I +C GPC G  S E
Sbjct: 142 PYTEASQLRLILDLIGSIFPVRSCKYKLTEEAVAAGKYRVCLDYHIHKCKGPCEGLQSEE 201

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   + E    L G    L   +   M Q   +  +E A   + ++  L         +
Sbjct: 202 EYQAMIREIVTLLKGKTSALVRDLTAEMQQKAAELKFEEAATLKAQIEGLKRYAERQKVV 261

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            N     D F++   +  AC        G+  G+   +L     +    +L+ FL  +Y 
Sbjct: 262 SNEPVDRDVFAIATGEEDACGVIFRIREGKLIGSRHTYLTNTGNTPLPNLLASFLEHYYL 321

Query: 296 DKP--CPENILLSEEAEETSLLEISFF----KQYGYKVKITVPKQGEKRKIIEQALINAH 349
           + P   P+ I L  E  E  L  +       +    +V+ TVP+ GEK ++I   L NA 
Sbjct: 322 ETPDLIPQEIFLQAELPEEELEALRQLLASRQTGQRQVRFTVPRIGEKAQLIAMCLDNAE 381

Query: 350 RSHTQKLSTEI------SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
               + +  +            L+   +   L  +P+RIE +DNSH  G   V  MV   
Sbjct: 382 HHLHEFMVQKRLRGEMSRKSPALESLKQVLHLDKLPERIECFDNSHFQGTDYVSSMVTFV 441

Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463
                K+ YRKF L     +  DD A M+  + RR+S  +  E                 
Sbjct: 442 LGKPKKSDYRKFKLKS--FEGSDDYAAMQEAVTRRYSGTLAEE--------------LPM 485

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PD+V++DGGKGQ++ A   L++L ++  + +  +AK  +     E F   + +   L   
Sbjct: 486 PDLVLIDGGKGQVNVAWKALQELGID--VPVAGLAKRLE-----EIFVPNERDPYNLPKT 538

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
            P L  +Q+LRDEAHRFAIT HRK R  +   + L  I G+G      LL  FG+V+ ++
Sbjct: 539 SPALKLLQQLRDEAHRFAITYHRKLRSDRTIRTELTGIKGVGEKSAEKLLSRFGSVETVA 598

Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           ++S E L+ + G  +K A  IY +F +  +  P
Sbjct: 599 KASIEELSEVTG--RKTAESIYRYFRQQDADQP 629


>gi|163841016|ref|YP_001625421.1| excinuclease ABC subunit C [Renibacterium salmoninarum ATCC 33209]
 gi|189038078|sp|A9WT69|UVRC_RENSM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|162954492|gb|ABY24007.1| excinuclease ABC subunit C [Renibacterium salmoninarum ATCC 33209]
          Length = 655

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 186/644 (28%), Positives = 321/644 (49%), Gaps = 40/644 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
            + ++P  PGVY+  D  GRV+YVGKA NL+ R+ SY  +      +   M+    ++++
Sbjct: 10  KTGEIPTDPGVYRFRDEHGRVIYVGKAKNLRSRLTSYFANPVTLLPKTFAMVHTATSVQW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+  +E+EAL LE   IK   PR+N+  RDDKS+PY+ +T   + P +   R        
Sbjct: 70  TIVGSELEALQLEYTWIKEFAPRYNLAFRDDKSYPYLAVTMGEEFPRVQVMRGERRKGTR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGPF    A+ +T+++L R F +R+C+ S F+      RPCLL  I +C+ PC G +S+
Sbjct: 130 YFGPFT-AGAIRETVDTLLRVFPVRTCSPSTFKRAQQSGRPCLLGYIDKCAVPCVGRVSA 188

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++     E   F+ G        + + M +A  + DYE A   RD + AL  +   N  
Sbjct: 189 EEHRTLADEFCAFMGGEAKRFIGTLEKQMAEAVAELDYERAARLRDDVIALRKVFERNAV 248

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D F+++ ++  A +Q      G+ RG   + ++   +   A+++ + L+Q Y
Sbjct: 249 VLAEDTSADIFAVHQDELEAAVQVFNVRSGRIRGQRGWVVEKVEDLVPAELIEHLLQQVY 308

Query: 295 TDK-----PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
            D+       P  IL+ E       L        G KV+I VP++G+K  ++E   +NA 
Sbjct: 309 GDERADEDRIPRQILVPELPANVEQLTEWLSGLRGAKVEIKVPQRGDKAALMETVALNAE 368

Query: 350 RSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
           ++     S          + L++      LP    RIE YD SH+ G + V  MVVV + 
Sbjct: 369 QAMKLHKSKRAGDLTQRSLALRELQDALDLPLPLLRIECYDISHVQGTNVVASMVVVEDG 428

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL-------------NFH 452
              K++YR+F++  +    +DD A M  V+ RRF   ++ +++              +  
Sbjct: 429 IAKKSEYRRFSITGD--AARDDTASMYDVITRRFRNYLQEQQDRAEALTRPVEFEISDAA 486

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
               +  F   P++V++DGG  Q++A    L  L + + + +I +AK  +     E +  
Sbjct: 487 ETAPKSKFAYPPNLVVVDGGPPQVAATSRALADLGITD-VAVIGLAKRLE-----EVWLP 540

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLL 571
           +    ++L      LY +QR+RDEAHRFAI+ HR++R K+   S LD + G+G  +++ L
Sbjct: 541 EDDFPVILPRTSQGLYLLQRIRDEAHRFAISFHRQKRGKSMTASLLDGVPGLGESKQKAL 600

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           L+ FG+VK +  +    ++ ++GI   +A  + +   ++    P
Sbjct: 601 LKHFGSVKKLQSADVSQISEVKGIGPVLAEAVRSAL-ESVDAQP 643


>gi|288549792|ref|ZP_05968169.2| excinuclease ABC subunit C [Enterobacter cancerogenus ATCC 35316]
 gi|288317401|gb|EFC56339.1| excinuclease ABC subunit C [Enterobacter cancerogenus ATCC 35316]
          Length = 588

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 212/606 (34%), Positives = 332/606 (54%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  SN  + +   +++ I+NI  TVT TE EALLLE 
Sbjct: 1   MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIHNIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + V   + FL+G
Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLAG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251
            +  +  ++   M +A+   ++E A   RD++ A+  +          + +D   + ++ 
Sbjct: 180 KDDQVLTQLIARMEKASGALEFEEAGRIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAYDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            LAC+   F   G+  G+ ++F K    +   +++  F+ QFY      +  P  ILL  
Sbjct: 240 GLACVHVLFIRQGKVLGSRSYFPKVPGGTEMGEVVETFVGQFYLQGSQMRTLPSEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
             ++ +LL  S     G +V +    +G++ + ++ A  NA  + T KLS + +    L 
Sbjct: 300 NLDDKTLLSESLSSLAGRRVNVQTRPRGDRARYLKLARTNAATALTTKLSQQSTVHQRLT 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
               +  LP I  R+E +D SH MG   V   VV   NG ++ +YR++N+    +   DD
Sbjct: 360 ALATQLKLPEIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL RR+ + I+  +                PDV+++DGGKGQL  A+ V + L+
Sbjct: 417 YAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQLGQAKAVFESLD 461

Query: 488 VE---NRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           VE   N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ +RDE+H  AI+
Sbjct: 462 VEWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIS 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A K
Sbjct: 522 GHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLLNASMEEIAKVPGISQGLAEK 581

Query: 603 IYNHFH 608
           IY    
Sbjct: 582 IYYSLK 587


>gi|311107558|ref|YP_003980411.1| excinuclease ABC subunit C [Achromobacter xylosoxidans A8]
 gi|310762247|gb|ADP17696.1| excinuclease ABC, C subunit [Achromobacter xylosoxidans A8]
          Length = 608

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 215/614 (35%), Positives = 319/614 (51%), Gaps = 28/614 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+ LD AG V+YVGKA +L+KR+ SY   N  + RI  M++++  +  TVT 
Sbjct: 13  DLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVARLEVTVTR 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+IK LKPR+NIL RDDKS+PY+LIT  H  P +  +R ++  +G YFGP
Sbjct: 73  SEAEALILENNLIKTLKPRYNILFRDDKSYPYLLIT-GHDWPRIAYYRGATNKRGQYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +  AV +TI  LQ+ F LR+C DSVF +R+RPCLL QI RCS PC G I +  Y   V
Sbjct: 132 FPNAWAVRETIQILQKVFRLRTCEDSVFANRSRPCLLHQIGRCSAPCVGAIEAADYERDV 191

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241
             A +FL+G   ++  +I   M QA  +  +E A   RD++ +L+ + +     +     
Sbjct: 192 QRAVRFLNGEAKDVMGEIENRMQQAASELRFEEAAALRDQMGSLARVLHQQTMENVSGED 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  ++       C+       G++ G   FF          Q+L  F+ Q YTD   P 
Sbjct: 252 TDIIAVAIAGGKVCVNLAMVRGGRHLGDKPFFPSHAEGEAAPQVLEAFVAQHYTDNAMPP 311

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++ S    +  L+ +   +  G   ++    QG +R  +EQA  NA  +  + L+   +
Sbjct: 312 VLVCSHALPDPDLIGLLVEQAGGRPSRVLTRPQGARRAWLEQATKNAEMALARALTESGA 371

Query: 362 HQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                    +   L          RIE +D SH  G +     VV   +    + YR++N
Sbjct: 372 RAARTLALAEALDLDTDEAALDALRIECFDISHTAGEATQASCVVFEHHDMQPSLYRRYN 431

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A MR VL RRF+++   E                 P +V++DGGKGQ+
Sbjct: 432 I--GGITPGDDYAAMRQVLSRRFAKVADGE--------------APMPGLVLIDGGKGQV 475

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRD 535
             A+ V  +L ++ + T++ +AKG  R  G+E          + L      L  I ++RD
Sbjct: 476 EVARQVFVELGLDVQ-TLVGVAKGEGRKVGLETLVFADSRPPVALGGESAALMLIAQVRD 534

Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT  R RR KA   S L+EI GIG  R++ LL  FG    ++ +S E LAS++G
Sbjct: 535 EAHRFAITGMRARRAKARNVSRLEEIEGIGARRRQRLLARFGGFSGVASASIEDLASVDG 594

Query: 595 ISKKIACKIYNHFH 608
           IS+ +A +IY    
Sbjct: 595 ISQDLAIRIYEALR 608


>gi|290961316|ref|YP_003492498.1| ABC excision nuclease subunit C [Streptomyces scabiei 87.22]
 gi|260650842|emb|CBG73959.1| ABC excision nuclease subunit C [Streptomyces scabiei 87.22]
          Length = 676

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 185/630 (29%), Positives = 304/630 (48%), Gaps = 45/630 (7%)

Query: 13  YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y+  D   RV+YVGKA +L++R+ +Y         R   M++   ++ +TV  TEVEAL 
Sbjct: 2   YKFRDEHRRVIYVGKAKSLRQRLANYFQDLTGLHPRTRTMVTTAASVEWTVVSTEVEALQ 61

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131
           LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R        YFGP+A   A+
Sbjct: 62  LEYSWIKEFDPRFNVKYRDDKSYPYLAVTMNEQYPRVQVMRGHKKKGVRYFGPYAHAWAI 121

Query: 132 EKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
             T++ L R F +R+C+  VF++     RPCLL  I +CS PC   IS+E + E   E  
Sbjct: 122 RDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVERISAEDHRELADEFS 181

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCF 245
            F++G       ++ + M  A  + +YE A   RD + AL      N  +       D  
Sbjct: 182 DFMAGRTGTYIRRLEKRMTDAAEEMEYERAARLRDDIEALKKAMEKNAVVLADATDADLI 241

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPEN 302
           +L  ++  A +Q      G+ RG   +        T   ++ + L+Q Y ++     P+ 
Sbjct: 242 ALAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVTTGDLVEHALQQLYGEETGDAVPKE 301

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS- 361
           +L+    +    ++    ++ G +V + VP++G+K+ ++E    NA +S     +   S 
Sbjct: 302 VLVPALPDPVGPVQEWLTERRGAQVSLRVPQRGDKKALMETVERNAQQSLVLHKTRRASD 361

Query: 362 ---HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  L++  +   L   P RIE YD SH+ G   V  MVV  +    K++YR+F + 
Sbjct: 362 LTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIK 421

Query: 419 PN-------DVKTQDDCAMMRMVLERRFSQLIKNEENLNF-----------------HPK 454
                      + QDD   M  V+ RRF + +  +E                        
Sbjct: 422 GRVGDTQVWHGEGQDDVRSMHEVIARRFRRYLAEKEKTGEWVEEDAAGAEGPAGGLKDDD 481

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
            +   F   P +V++DGG+ Q++AA+  L +L +++ I +  +AK  +     E +    
Sbjct: 482 GRPRRFAYPPQLVVVDGGQPQVAAARRALDELGIDD-IAVCGLAKRLE-----EVWVPGD 535

Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQ 573
            + +VL      LY +QR+RDEAHRFAIT  R +R K    SPLD++ G+G  RK+ LL+
Sbjct: 536 DDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRTKRAKRFRASPLDDVPGLGEARKQALLK 595

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKI 603
            FG++K +  ++ + +  + GI +K A  I
Sbjct: 596 HFGSLKKLRSATIDQICEVPGIGRKTAETI 625


>gi|299822581|ref|ZP_07054467.1| excision endonuclease subunit UvrC [Listeria grayi DSM 20601]
 gi|299816110|gb|EFI83348.1| excision endonuclease subunit UvrC [Listeria grayi DSM 20601]
          Length = 611

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 180/618 (29%), Positives = 298/618 (48%), Gaps = 45/618 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY     H  +   ++ +I +  + VT +
Sbjct: 26  LPDQPGCYLMKDDQGTIIYVGKAKVLKNRVRSYFTGT-HDGKTQRLVQEIADFEYIVTSS 84

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 85  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 143

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C         + CL + + +C  PC  E+   KY +   
Sbjct: 144 PNVYAANEVKKILDRLYPLRKCNTLP----NKVCLYYHLGQCLAPCVFEVDEAKYRQMED 199

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K+++   M QA    ++E A  +RD++ A+                 
Sbjct: 200 EIVSFLNGGYKKVKQELNTKMAQAAENMEFEKAGEYRDQINAIETTMEKQKMTVTDFVDR 259

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 260 DVFGYAIDKGWMCVQVFFIRQGKLIEREASQFPFYNDADEDFLTFIGQFYQKANHIPPKE 319

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           I L ++ ++ ++  +          K+ VPK+G K+++++ A  NA  +  +K       
Sbjct: 320 IYLPDDVDDEAIQAVVPE------TKVLVPKRGNKKELVKLAYKNAKIALNEKFSLLERN 373

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    RIE +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 374 EERTVGAVERLGEAMGIPTPS-RIEAFDNSNIQGTDPVSAMVTFIDGKPSKNDYRKYKIK 432

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR+ +++K                   PD++++DGGKGQ+ +
Sbjct: 433 T--VAGPDDYGTMREVVRRRYWRVLKEG--------------LPLPDLILIDGGKGQIES 476

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ + + +L ++  I +  +AK  +        F +  E + L       Y +QR++DE 
Sbjct: 477 ARDILVNELGLD--IPVAGLAKDDRHRTSQ-LLFGEPLEIIPLERNSESFYLLQRIQDEV 533

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K+   S LD I G+GP RK+ LLQ FG++K I  +S E L +  G+ 
Sbjct: 534 HRFAITFHRQLRSKSGFQSVLDGIPGVGPGRKKTLLQHFGSMKKIKAASVEELKAA-GVP 592

Query: 597 KKIACKIY---NHFHKNT 611
           + +A  +    +  +K +
Sbjct: 593 QAVAEAVKAKVDSLNKKS 610


>gi|269956343|ref|YP_003326132.1| excinuclease ABC subunit C [Xylanimonas cellulosilytica DSM 15894]
 gi|269305024|gb|ACZ30574.1| excinuclease ABC, C subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 659

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 192/625 (30%), Positives = 302/625 (48%), Gaps = 36/625 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  GRV+YVGKA NL+ R+ +Y     N   R   M++   ++ +TV 
Sbjct: 13  EIPTSPGVYRFRDPHGRVIYVGKAKNLRSRLSNYFQDLANLHSRTQTMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK+  PRFN+  RDDKS+P++ +T     P     R +      YFG
Sbjct: 73  GTEVEALALEYSWIKQFDPRFNVKYRDDKSYPFLAVTMADDFPRAQVMRGAKRPGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T++ L R F +R+C+  VF+      RPCLL  I +CS PC G IS   +
Sbjct: 133 PYGHAWAIRETLDLLLRVFPIRTCSAGVFKRAAQSGRPCLLGYIDKCSAPCVGRISPADH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
                +   F++G       +I + M  A    +YE A   RD + AL      N  +  
Sbjct: 193 KALAEDFCAFMAGDTQRFVRRIEKQMRDAAANMEYEQAARLRDDVQALQRALEKNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D F+L  ++  A +Q      G+ RG   + ++   + T+ +++ + L+Q Y   
Sbjct: 253 DATDADIFALVGDELEAAVQVFHVRGGRVRGQRGWVVEKVEDITDGELVEHLLQQVYGGD 312

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P  +L+     +   +        G +V + VP++G+KR++ E    NA  +   
Sbjct: 313 AEASVPREVLVPVLPPDPQQVTAWLAGLRGSRVDVRVPQRGDKRELAETVRKNAEHALML 372

Query: 355 KLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             +       +    L++  +   L   P RIE YD SH  G      MVV  +    K 
Sbjct: 373 HRTRRAGDLTTRSQALRELQEALDLDTAPLRIECYDVSHTQGTYQSASMVVFEDGLPRKG 432

Query: 411 QYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKN--------------EENLNFHPKK 455
           +YR F++   +    +DD A M  V+ RRF + + +              E +    P +
Sbjct: 433 EYRSFSIRGPEGDGARDDTAAMYEVITRRFRRYLADRARSGELELDLESGEVDPQEEPAE 492

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
            +  F   P++V++DGG  Q++AAQ  L  L V + + +  +AK  +     E +     
Sbjct: 493 TKKRFAYPPNLVVVDGGPPQVAAAQRALDDLGVTD-VALCGLAKRLE-----EVWVAHDD 546

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574
             ++L      LY +QR RDEAHRFAIT HRKRR K    S LD + G+GP R++ LL  
Sbjct: 547 YPVILERSSEGLYLLQRARDEAHRFAITQHRKRRSKGMTVSALDGVPGLGPARQKALLTH 606

Query: 575 FGTVKMISRSSPETLASIEGISKKI 599
           FG+VK +  +S E +AS+ G+    
Sbjct: 607 FGSVKRLRAASVEEIASVRGMGTTT 631


>gi|210615348|ref|ZP_03290512.1| hypothetical protein CLONEX_02728 [Clostridium nexile DSM 1787]
 gi|210150375|gb|EEA81384.1| hypothetical protein CLONEX_02728 [Clostridium nexile DSM 1787]
          Length = 612

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 207/619 (33%), Positives = 330/619 (53%), Gaps = 25/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  ++ N   +I  M++ I    +
Sbjct: 7   ELKKLPAKPGVYLMHDEKDHIIYVGKAISLKNRVRQYFQTSRNKGAKIEQMVTHIRRFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDK +P+I +T     P +   R     +  
Sbjct: 67  IVTDSELEALVLECNLIKEHRPKYNTMLMDDKGYPFIKVTVNEPFPRIMMARTMKKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  +++ + +RSC  ++ +   + RPCL + IK+C  PC G IS E
Sbjct: 127 YFGPYTSAGAVKDTIELIRKLYHIRSCNRNLPKDIGKDRPCLNYHIKQCKAPCQGYISEE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y E +HE  +FL+G    + + +   M +A+ K ++E AI +R+ L ++  I       
Sbjct: 187 QYRESIHEVIRFLNGHYDVILKDLEEKMLEASEKMEFEKAIEYRELLGSVKKIAQKQKIT 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           DS     D  ++  +   A +Q  F   G+  G   FFL+  SE +  QIL  F++QFY 
Sbjct: 247 DSSGEDRDILAVAKDAEDAVVQVFFIRGGRLIGRDHFFLRNSSEESKGQILESFIKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  +++ EE EE  +LE    K+  ++V I VPK+GEK K++E A  NA      
Sbjct: 307 GTPFIPAELMIQEELEEREILEEWLSKKREHRVHIRVPKKGEKEKLVELARKNAALVLNT 366

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +K+  K   L  I  R+E +D S+  G ++VG MVV  +    +N
Sbjct: 367 DKERLKREEGRTIGAVKEIEKLLDLSGIV-RMEAFDISNTNGFASVGSMVVYEKGKPKRN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    V+  DD A M  VL RRF   +K  ++      K+  SF  +PD++++D
Sbjct: 426 DYRKFKIKG--VQGADDYASMEEVLTRRFEHGLKERQD-----GKELGSFHVFPDLIMMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL KL++  +I +  + K                  + ++        I
Sbjct: 479 GGKGQVNVALAVLDKLHL--QIPVCGMVKDDNHRTRG---LYYNNIEIPIDRNSEGFKLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DEAHRFAI  HRK R +   +S LD+I GIG  R++ L++ F  +  I  +S E L
Sbjct: 534 TRIQDEAHRFAIEFHRKLRSQGQVHSILDDIPGIGQARRKALMKHFMNLDAIKNASVEEL 593

Query: 590 ASIEGISKKIACKIYNHFH 608
            ++  +++K A  +YN FH
Sbjct: 594 KNLPSMNEKSAKDVYNFFH 612


>gi|78044731|ref|YP_359139.1| excinuclease ABC subunit C [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|90111061|sp|Q3AFE5|UVRC_CARHZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|77996846|gb|ABB15745.1| excinuclease ABC, C subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 607

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 206/614 (33%), Positives = 318/614 (51%), Gaps = 23/614 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
             + +P+ PGVY   D  G V+YVGKA NL+ R++SY         +   M+ +  +I  
Sbjct: 6   KVKNLPDSPGVYLYKDEKGEVIYVGKAKNLKNRVRSYFQPPEKLLPKTRVMMEKARDIEV 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T TEVEAL+LE N+IKR +PR+NILL+DDKS+PY+ IT   + P L   R      G 
Sbjct: 66  IITSTEVEALILEQNLIKRYRPRYNILLKDDKSYPYLKIT-GEEFPRLLITRRVVNDGGR 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+    A+ +T   L+  F  R+C  ++F  + RPCL F IK+CS PC GEIS E+Y
Sbjct: 125 YFGPYPDAGALNETYKLLRSIFKFRTCTPTIFAQKKRPCLNFHIKKCSAPCAGEISREEY 184

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + +     FL G   NL +K+ + M  A+   ++E A   RD++ AL  I         
Sbjct: 185 FKEIEMVVDFLEGRGENLIKKLKKEMAIASDNLEFERAAKLRDQILALEKILAKQKISRG 244

Query: 241 RM--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           +   D   + + +NL          G   G   +    + E+    +    +  +   K 
Sbjct: 245 QRNADVVVVANRENLGVGLIFVIRQGNLLGQKVYTFTGEMETGEL-LNQVLVTHYGEAKE 303

Query: 299 CPENILLSEEAEETSLLEISFFK-QYGYKVKITVPKQGEKRKIIEQALINA----HRSHT 353
            P  I+LS           S+F+ ++G K K TVPK+GEK ++++ AL N          
Sbjct: 304 VPVEIILSTRENLDEEFLNSWFELKFGKKPKFTVPKRGEKFELLKMALENVNFTLDEKIK 363

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
                ++ ++  L D  +   LP +P+RIE YD SH+ G   V  MVV  +   VK +YR
Sbjct: 364 LNEKKQLLNEKALMDLKEALNLPVVPRRIEGYDISHLAGTGTVASMVVFIDGEPVKGKYR 423

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           +F +        DD   M   + RRF + +  +E         + SF   PD+V++DGGK
Sbjct: 424 RFAIRSA---ANDDYTAMFEAVLRRFKKYLALQEE-----GGADGSFEELPDLVLIDGGK 475

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQL+AA   LK+ N+  + T+I++AK  +     E F   K ++L+L      L  +QR+
Sbjct: 476 GQLNAAMDALKETNLLGKFTVIALAKEQE-----EIFLPGKKDSLLLTQDREGLKLLQRV 530

Query: 534 RDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           RDEAHRFA     K+R K   S L+++ GIGP R++ LL  FG++K +  ++ E + ++ 
Sbjct: 531 RDEAHRFARGYQEKKRVKTLASLLEQVEGIGPKRRKQLLNKFGSIKNLREATVEEITAVP 590

Query: 594 GISKKIACKIYNHF 607
           GI+++IA ++    
Sbjct: 591 GITREIAERLKELL 604


>gi|169797431|ref|YP_001715224.1| excinuclease ABC subunit C [Acinetobacter baumannii AYE]
 gi|229557973|sp|B0VE41|UVRC_ACIBY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|169150358|emb|CAM88255.1| excinuclease ABC subunit C; UvrC with UvrAB is a DNA excision
           repair enzyme [Acinetobacter baumannii AYE]
          Length = 599

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 197/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + + PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   VT 
Sbjct: 15  NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++     P +   R     Q G +FG
Sbjct: 75  SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G +S E Y E 
Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V+ + +FL G    L +++   M QA    ++E A+ +RDRL+ L  +Q           
Sbjct: 195 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299
            D  ++ +   + C+Q      G+  G  ++F          Q+LS F+  FY       
Sbjct: 255 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 313

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++++    +   LE +  +Q+G KV+I    +  + + +E A +N   +   +LS  
Sbjct: 314 PSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNH 373

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
           +          +    P     IE +D SH MG + +   VV  + G  K  YR+F +  
Sbjct: 374 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 431

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR  L RR+ + +                    PD++++DGGKGQL  A
Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 470

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             V+++L +E    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHR
Sbjct: 471 MEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHR 528

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR +R K+ + S L+ I G+GP R+R LL  FG ++ + ++S + L  + G+ + 
Sbjct: 529 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 588

Query: 599 IACKIYNHFHK 609
           +A  IY   H+
Sbjct: 589 MARTIYKILHE 599


>gi|184156646|ref|YP_001844985.1| excinuclease ABC subunit C [Acinetobacter baumannii ACICU]
 gi|332873053|ref|ZP_08441010.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6014059]
 gi|183208240|gb|ACC55638.1| Nuclease subunit of the excinuclease complex [Acinetobacter
           baumannii ACICU]
 gi|332738565|gb|EGJ69435.1| excinuclease ABC, C subunit [Acinetobacter baumannii 6014059]
          Length = 602

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 197/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + + PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   VT 
Sbjct: 18  NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++     P +   R     Q G +FG
Sbjct: 78  SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 137

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G +S E Y E 
Sbjct: 138 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 197

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V+ + +FL G    L +++   M QA    ++E A+ +RDRL+ L  +Q           
Sbjct: 198 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299
            D  ++ +   + C+Q      G+  G  ++F          Q+LS F+  FY       
Sbjct: 258 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 316

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++++    +   LE +  +Q+G KV+I    +  + + +E A +N   +   +LS  
Sbjct: 317 PSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNH 376

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
           +          +    P     IE +D SH MG + +   VV  + G  K  YR+F +  
Sbjct: 377 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 434

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR  L RR+ + +                    PD++++DGGKGQL  A
Sbjct: 435 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 473

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             V+++L +E    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHR
Sbjct: 474 IEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHR 531

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR +R K+ + S L+ I G+GP R+R LL  FG ++ + ++S + L  + G+ + 
Sbjct: 532 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 591

Query: 599 IACKIYNHFHK 609
           +A  IY   H+
Sbjct: 592 MARTIYKILHE 602


>gi|297198890|ref|ZP_06916287.1| excinuclease ABC, C subunit [Streptomyces sviceus ATCC 29083]
 gi|297147230|gb|EDY55222.2| excinuclease ABC, C subunit [Streptomyces sviceus ATCC 29083]
          Length = 684

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 179/641 (27%), Positives = 306/641 (47%), Gaps = 58/641 (9%)

Query: 13  YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y+  D   RV+YVGKA +L++R+ +Y     +   R   M++   ++ +TV  TEVEAL 
Sbjct: 2   YRFRDEHRRVIYVGKAKSLRQRLANYFQDLASLHPRTRTMVTTAASVEWTVVSTEVEALQ 61

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131
           LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R        YFGP+    A+
Sbjct: 62  LEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKRKGVRYFGPYGHAWAI 121

Query: 132 EKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
             T++ L R F +R+C+  VF++ T   RPCLL  I +CS PC   +S++++ +   E  
Sbjct: 122 RDTVDLLLRVFPVRTCSAGVFKNATRTGRPCLLGYIGKCSAPCVDRVSADEHRDLAEEFC 181

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCF 245
            F++G       ++ + M  A  + +YE A   RD + AL      +  +       D  
Sbjct: 182 DFMAGRTGTYIRRLEKQMTDAAEEMEYERAARLRDDIGALKKAMEKSAVVLADATDADLI 241

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPEN 302
           ++  ++  A +Q      G+ RG   +      E T   ++ + L+Q Y ++     P+ 
Sbjct: 242 AVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEITTGALVEHALQQLYGEERGDSVPKE 301

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS- 361
           +L+    E    ++    ++ G  V + +P++G+K+ ++E    NA ++     +   S 
Sbjct: 302 VLVPALPEPVEPVQEWLAERRGSGVSLRIPQRGDKKALMETVQRNALQALALHKTKRASD 361

Query: 362 ---HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  L++  +   L   P RIE YD SH+ G   V  MVV  +    K++YR+F + 
Sbjct: 362 LTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLQRKSEYRRFQIK 421

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF--------------------------- 451
                 QDD   M  V+ RRF + +  +E                               
Sbjct: 422 G--FAGQDDVRSMHEVISRRFKRYLAEKEKTGEWVDDASQTDLKDASGNDVPAVSGTGPQ 479

Query: 452 --------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503
                       +   F   P +V++DGG+ Q++AA+  L +L +++ I +  +AK  + 
Sbjct: 480 GVPESGLKDDDGRPKKFAYPPQLVVVDGGQPQVAAAKKALDELGIDD-IAVCGLAKRLE- 537

Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEING 562
               E +     + +VL      LY +QR+RDEAHRFAIT  R +R ++   SPLD++ G
Sbjct: 538 ----EVWLPDDEDPVVLPRTSEGLYLLQRVRDEAHRFAITYQRTKRAQRFRSSPLDDVPG 593

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +G  RK+ LL+ FG++K +  ++ + +  + GI +K A  I
Sbjct: 594 LGDTRKQALLKHFGSLKKLRSATIDQICEVPGIGRKTAETI 634


>gi|85059149|ref|YP_454851.1| excinuclease ABC subunit C [Sodalis glossinidius str. 'morsitans']
 gi|119367840|sp|Q2NTS9|UVRC_SODGM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|84779669|dbj|BAE74446.1| excinuclease ABC subunit C [Sodalis glossinidius str. 'morsitans']
          Length = 610

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/616 (34%), Positives = 338/616 (54%), Gaps = 31/616 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY M D++G V+YVGKA +L+KR+ SY  +   + +   ++  I++I  T+T 
Sbjct: 13  TVTSQPGVYSMYDLSGTVIYVGKAKDLKKRLASYFRAQVASRKTEALVKSIHHIDVTITH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P +  HR +   +G YFGP
Sbjct: 73  TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDAHPRITSHRGAKHAKGDYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183
           F +  AV++T+  LQ+ F +R C DSV+R+R+RPCL +QI RC GPC    +S E+Y + 
Sbjct: 132 FPNGYAVKETLALLQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLGPCVAGLVSDEEYQQQ 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242
           V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +        +R  
Sbjct: 192 VEYVRLFLSGKDQQVLNQLVERMELASRALNFEDAAHARDQIQAVRRVTEKQFVSGDRED 251

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297
            D   +  +  +AC+   F   G+  G+ ++F K    +  A+++  F+ QFY      +
Sbjct: 252 LDVIGVSFDAGMACVHVLFIRQGKVLGSRSYFPKVPVGTELAEVVQTFVGQFYLQGSQMR 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  ILL     E +LL  S  +Q G K++I    +G++ + ++ A  NA  +   KLS
Sbjct: 312 SLPGEILLDFTLPEKTLLAASLSEQAGRKIQIQTQPRGDRARYLKLARTNAATALVTKLS 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + +    L    +   +     R+E +D SH MG   +   V+   NG V+ +YR++N+
Sbjct: 372 QQSTVHQRLAALAELLGI-QAINRMECFDISHTMGEHTIASCVIFDGNGSVRAEYRRYNI 430

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M  VL RR+ + ++ ++                PDVVI+DGGKGQL 
Sbjct: 431 EG--ITPGDDYAAMDQVLRRRYGKALEEKK---------------IPDVVIIDGGKGQLG 473

Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRL 533
            A+ V ++L V   ++R+ ++ +AKG  R AG+E  F+   GE + L    P L+ IQ +
Sbjct: 474 MAKAVFEQLEVPWDKSRVVLLGVAKGVDRKAGLETLFLQPHGEGMALPPDSPALHVIQHI 533

Query: 534 RDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RD++H  AIT HR +R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A +
Sbjct: 534 RDDSHNHAITGHRNKRAKVKNTSALELIEGVGPRRRQSLLKYMGGLQPLRNASVEEIAQV 593

Query: 593 EGISKKIACKIYNHFH 608
            GIS  +A KI+N   
Sbjct: 594 PGISGALAEKIFNALK 609


>gi|170782352|ref|YP_001710685.1| excinuclease ABC subunit C [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156921|emb|CAQ02089.1| ABC excision nuclease subunit C [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 642

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 192/640 (30%), Positives = 308/640 (48%), Gaps = 43/640 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
           ++ ++P  PGVY+  D A RVLYVGKA NL+ R+ +Y     +   R   M++    + +
Sbjct: 12  AAGEIPTSPGVYRFRDAADRVLYVGKANNLRARLANYFAPLESLHERTRRMVTSAAGVEW 71

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  +E EAL LE   IK   P FN+  RDDKS+PY+ +T     P +   R+       
Sbjct: 72  TVVGSEFEALQLEFTWIKEFDPPFNVKFRDDKSYPYLAVTMGEDYPRVMVTRNRKIRGAK 131

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+  V A+ +T++ L + F +RSC++S F+      RPCLL  I RC+ PC G  S 
Sbjct: 132 YFGPYTKVWAIRETVDHLLKVFPMRSCSESTFKRARQTNRPCLLGDIGRCAAPCVGRFSQ 191

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ + V +   F++G +     ++ + M  A  + DYE+A  HRD + AL    +    
Sbjct: 192 EEHRDIVDDFASFMAGNDSKYVGQLTQRMKDAAAEMDYEAAARHRDDIGALEAALSKTAV 251

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +++     D F +  ++  A +Q      G+ RGT T+ +  + +    +++   L   Y
Sbjct: 252 VFDDRVDADVFGIAADELAAAVQQFMVRGGRIRGTRTWVVDKELDIGIGELVETVLHNAY 311

Query: 295 TDKPCPENILLSEEAEETSLLEISFF----------------KQYGYKVKITVPKQGEKR 338
            D+  P   +L  E    +     +                 +   ++V + V ++G+K 
Sbjct: 312 EDEAHPPREVLVPELPADAAELELWLSQRRAAGEDDGSVRRGRPSSWQVDLRVAQRGDKA 371

Query: 339 KIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394
            +   A  NA  +     +   S        L D  +   +P  P R+E YD SH+ G +
Sbjct: 372 ALAHTAATNAQNALMLYKTRRSSDFTTRSKALADIQEALGMPDAPLRMECYDVSHLSGTN 431

Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------N 448
            V  MVV  +    K+QYR+FN+      + DD   +  V+ RR + L K  E       
Sbjct: 432 IVASMVVFEDGLPRKDQYRRFNIAD----STDDTESIHQVITRRLAYLGKEAEVPADAAP 487

Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508
                      F   P+++I+DGG+ Q++AAQ  L++  V   I +  IAK  +     E
Sbjct: 488 PELGEAPPVNKFSYSPNLLIVDGGQPQVAAAQRALEESGVTG-IQLAGIAKRLE-----E 541

Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRK 568
            +       ++L      L+ IQR+RDEAHRFAIT  R RRK+   S L+EI G+GP R 
Sbjct: 542 IWLPDSDYPIILPRNSDALFLIQRIRDEAHRFAITHQRARRKRDITSVLNEIPGLGPSRV 601

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + LLQ FG+V  + ++  E +A++  I   +A  +Y    
Sbjct: 602 QRLLQQFGSVAKLKQAEVEEIAAVRTIGPTLAQAVYERLR 641


>gi|322387148|ref|ZP_08060758.1| excinuclease ABC subunit C [Streptococcus infantis ATCC 700779]
 gi|321141677|gb|EFX37172.1| excinuclease ABC subunit C [Streptococcus infantis ATCC 700779]
          Length = 608

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 170/621 (27%), Positives = 290/621 (46%), Gaps = 41/621 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C            + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTVCRKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 AMSQEVSDFLKGQDDKIIDDLKEKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+ ++ +  ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEILIPQDIDGEAVKALVDTKVLK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ ++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + + ++ 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKYFKSLTKIKEASVDEIVAV- 574

Query: 594 GISKKIACKIYNHFHKNTSHT 614
           GI + +A  ++ H +      
Sbjct: 575 GIPRAVAEAVHQHLNLEEDSA 595


>gi|95928939|ref|ZP_01311684.1| excinuclease ABC, C subunit [Desulfuromonas acetoxidans DSM 684]
 gi|95134840|gb|EAT16494.1| excinuclease ABC, C subunit [Desulfuromonas acetoxidans DSM 684]
          Length = 612

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 202/614 (32%), Positives = 314/614 (51%), Gaps = 31/614 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY M    GRVLYVGKA NL+ R+++Y+   +    +  ++ ++  +   VT TE 
Sbjct: 14  TRPGVYLMFGEDGRVLYVGKARNLRARLRNYVRGEDTRAHVQFLLRRVVRVETIVTDTEK 73

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL+LE  +IK+ KPR+NI LRDDK++  + I      P +   R        YFGP++S
Sbjct: 74  EALILENTLIKKHKPRYNINLRDDKTYVSLRIDITEPFPGIQIVRRVKRDGALYFGPYSS 133

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
             A+++T+  L R F LR       R R RPCL +QI +CS PC G+IS E Y + V   
Sbjct: 134 AGALKETLKELYRIFPLRHHRWQQCRRRDRPCLFYQIGQCSAPCHGKISQEDYRKLVDTV 193

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDC 244
             FLSG + ++   +   M QA  + +YE A   RD++ A+         +       D 
Sbjct: 194 IAFLSGRHDDVINMLRDKMAQAAQEMNYEEAARLRDQIRAMEQTIEQQKVVSADGTDSDV 253

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
             L+       +   F   G+  G  ++ L    +     +  +  + +  D   P  +L
Sbjct: 254 VGLHREGGEVEVCLLFVRAGRLVGRRSYLLSWTLDEDEL-LAGFLQQYYGRDTLIPPKVL 312

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           L         L++   ++ G KV + VPK+G + +++E A  NA  S+ ++     +   
Sbjct: 313 LPLLPSSAETLQLWLSERRGSKVHLQVPKRGARSELLELANKNATESYRERGDRRDARTA 372

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
           +L+D  K   L  +P+R+E YD S++ G  +VG MVV  +    K  YR + +    V+ 
Sbjct: 373 VLEDIQKSLGLSRLPQRMECYDISNVQGQYSVGSMVVTTDGEPDKAAYRHYRIKT--VEG 430

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A +  VL RR S+ I+ ++                PD+V++DGGKGQL+    VL 
Sbjct: 431 ADDFASLHEVLTRRLSRGIEEQD---------------LPDMVLIDGGKGQLAMVDDVLT 475

Query: 485 KLNVENRITIISIAK--------GPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRD 535
            LN+ +RI ++SIAK        G       E+FF   +   +VL    P L+ ++RLRD
Sbjct: 476 TLNLHSRIDLVSIAKSRVKRNVRGHAVERSEERFFRPGRKNPVVLRQGSPALFMLERLRD 535

Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT HRK R KA   S LD+I G+GP R++ LL+  G+V  + ++S + L  + G
Sbjct: 536 EAHRFAITHHRKLRNKATLESELDKIPGVGPGRRKALLKHCGSVTKVKKASLQELQQVPG 595

Query: 595 ISKKIACKIYNHFH 608
           +   +A  +Y++FH
Sbjct: 596 VPDSVAQAVYDYFH 609


>gi|269102847|ref|ZP_06155544.1| excinuclease ABC subunit C [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162745|gb|EEZ41241.1| excinuclease ABC subunit C [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 589

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 207/606 (34%), Positives = 332/606 (54%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M + +  V+YVGKA +L+KR+ SY  +N    +   ++  I+ +  TVT TE EAL+LE 
Sbjct: 1   MYNASDEVIYVGKAKDLKKRLSSYFRTNVAGEKTRALVKNIHKVDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI ++  H+ P L  HR     +G YFGP+    AV ++
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFLS-HHQHPRLSMHRGVKRRKGEYFGPYPDAGAVRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C DSV+ +R+RPCL++QI RCS PC    IS E Y   V  A+ FL G
Sbjct: 120 LHLMQKIFPVRQCEDSVYANRSRPCLMYQIGRCSAPCVKGYISDEDYQGQVQLARLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250
            +  +   +   M  A+   D+E A ++RD++ AL  +Q      ++  D      + H 
Sbjct: 180 KDRQVIAMLVEKMETASQNLDFEKAAVYRDQIQALRRVQEQQFVSHDTEDDLDVVGIAHE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306
             +ACI   +   G+  G+ ++F K  ++    ++LS F+ QFY ++      P NI+LS
Sbjct: 240 NGMACIHALYIRQGKILGSRSYFPKMPADVELTEVLSSFVTQFYLNQAEGRVIPTNIILS 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           E+  +ET+++  +  +  G KV      +G + + ++ A  NA  + T KL+ +++ Q  
Sbjct: 300 EDLGDETAVISDTLSQLAGRKVVFKYHPRGNRARYLKLAQTNAKTALTSKLNHKMTIQER 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
             +  +  +L  I  R+E +D SH MG   V   VV  ++G  K  YR++N+    +   
Sbjct: 360 FFELQQALSLKPIS-RMECFDISHTMGEKTVASCVVFNQDGPYKPDYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+ + ++ ++                PD++ +DGG+GQLS A  V+K 
Sbjct: 417 DDYAAMAQVLERRYGKQMELDK---------------IPDIIFIDGGRGQLSRAYDVVKP 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  +I +AKG  R  G+E      GE   L    P L+ IQ +RDE+H  AI+
Sbjct: 462 YMEDWPKRPLMIGVAKGTTRKPGLETLIFITGEEFSLPSDSPALHLIQHIRDESHNHAIS 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L++I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A K
Sbjct: 522 GHRAQRAKVRKRSALEDIEGVGPKRRQALLKYMGGLQELKRASKEEIAKVPGISLALAEK 581

Query: 603 IYNHFH 608
           I +  H
Sbjct: 582 IVDALH 587


>gi|322506533|gb|ADX01987.1| uvrC [Acinetobacter baumannii 1656-2]
 gi|323516412|gb|ADX90793.1| excinuclease ABC subunit C [Acinetobacter baumannii TCDC-AB0715]
          Length = 599

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 197/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + + PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   VT 
Sbjct: 15  NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++     P +   R     Q G +FG
Sbjct: 75  SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G +S E Y E 
Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V+ + +FL G    L +++   M QA    ++E A+ +RDRL+ L  +Q           
Sbjct: 195 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299
            D  ++ +   + C+Q      G+  G  ++F          Q+LS F+  FY       
Sbjct: 255 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 313

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++++    +   LE +  +Q+G KV+I    +  + + +E A +N   +   +LS  
Sbjct: 314 PSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNH 373

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
           +          +    P     IE +D SH MG + +   VV  + G  K  YR+F +  
Sbjct: 374 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 431

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR  L RR+ + +                    PD++++DGGKGQL  A
Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 470

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             V+++L +E    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHR
Sbjct: 471 IEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHR 528

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR +R K+ + S L+ I G+GP R+R LL  FG ++ + ++S + L  + G+ + 
Sbjct: 529 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 588

Query: 599 IACKIYNHFHK 609
           +A  IY   H+
Sbjct: 589 MARTIYKILHE 599


>gi|154706355|ref|YP_001424631.1| excinuclease ABC subunit C [Coxiella burnetii Dugway 5J108-111]
 gi|189038044|sp|A9KFP2|UVRC_COXBN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|154355641|gb|ABS77103.1| excinuclease ABC subunit C [Coxiella burnetii Dugway 5J108-111]
          Length = 609

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 219/618 (35%), Positives = 338/618 (54%), Gaps = 26/618 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P   GVYQ+ D  G+V+YVGKA NLQKR+ SY      + +   M++Q+ +I+ T+
Sbjct: 10  LKTLPTGSGVYQIQDAQGKVIYVGKARNLQKRVSSYFRRQLDS-KTQAMMAQVQSIQTTI 68

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T  E EALLLEA+ IK+ +PR+N+LLRDDKS+PY+ +    K P L  +R +    G YF
Sbjct: 69  TRNENEALLLEASFIKQFRPRYNVLLRDDKSYPYLYLATHQKFPRLDFYRGAKKAPGRYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +  +V + +  +Q+ F LR C++S F++RTRPCL +QIKRC+ PC G ++ ++Y  
Sbjct: 129 GPYPNAGSVRENLALIQKLFKLRQCSESFFKNRTRPCLQYQIKRCTAPCVGYVNEQEYRR 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YN 240
            V +A  F  G N  +  K+   M  A+    +E A  +RD++  L  +Q          
Sbjct: 189 QVEDAILFFEGKNDQVIIKLTERMEVASENLVFEEAAHYRDQIRQLRRLQKQQIITGGKG 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT----D 296
            +D   +  +         F   G+  G   FF  T   +T    L  F+ Q+Y     +
Sbjct: 249 NIDIIGIAESNGAIGFAILFIRSGRMIGHKPFFPNTPLGTTLQTALVEFIPQYYLSPLRN 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              PE I+ SE  E+   ++ +       ++ IT  K+   ++    A +NA ++ +Q L
Sbjct: 309 GDIPERIVTSEPLEDRLWIQRALSSGLNRRLAITDQKRAPYKQWQAMAALNAAQALSQHL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + + +  + L+   K  ALP+   RIE +D SH +G + V   VV GE G +K  YR+FN
Sbjct: 369 AQKNTFALKLEAIQKSLALPNPIARIECFDISHTLGEATVASCVVFGEEGLIKKDYRRFN 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + V   DD   +R  L RR+ +L + E                 PDV+++DGG GQL
Sbjct: 429 I--SGVTPGDDYGALRQALTRRYVRLKEGE--------------GILPDVLLIDGGMGQL 472

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
             A  VL++L V   I + +IAKGP R AG+EK FV  + E + L   +   + IQ++RD
Sbjct: 473 RQAAEVLEELQVSGVI-LTAIAKGPGRKAGLEKLFVWGRREEIHLPADNIAFHLIQQIRD 531

Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAIT H  RR K+   S L EI GIGP R++ LL+ FG ++ + R+S E +A + G
Sbjct: 532 EAHRFAITAHCNRRAKRRVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPG 591

Query: 595 ISKKIACKIYNHFHKNTS 612
           +S+ +A  IY+  H++  
Sbjct: 592 VSETLAKAIYDACHQHKG 609


>gi|296108290|ref|YP_003619991.1| excinuclease ABC subunit C [Legionella pneumophila 2300/99 Alcoy]
 gi|295650192|gb|ADG26039.1| excinuclease ABC subunit C [Legionella pneumophila 2300/99 Alcoy]
          Length = 593

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 215/611 (35%), Positives = 332/611 (54%), Gaps = 34/611 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           MLD  G VLYVGKA NL+KR+ SY    N   +   ++SQI +I  +VT +E EALLLE+
Sbjct: 1   MLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTRSETEALLLES 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVDAVEK 133
           N+IK L+P++N+LLRDDKS+PYI +++    P +  +R       G++FGP+  V AV +
Sbjct: 61  NLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRIELYRSKKKPPSGNFFGPYPGVAAVRE 120

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC   IS E Y   V +A +FL G
Sbjct: 121 TIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLSVEDAIRFLQG 180

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251
               + +++A  M QA  + ++E A + RD++  L  IQ     +      D  ++    
Sbjct: 181 KCQIILDELAERMKQAVNQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGDADVIAIEVRP 240

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQFYTDKP--CP 300
             ACIQ      GQ   + +FF        + +             F+  +Y D     P
Sbjct: 241 GFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFVGFYYLDTSERIP 300

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + I+ ++   E+  LE    ++ G   KI V  +G K + ++ A+ N   S  + +S   
Sbjct: 301 DLIITNQSITESRPLEYILSQRRGKSCKIQVNPRGVKSRWMDFAVNNLRISVAEYVSKHS 360

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           + +   +   +  AL    +R+E +D SH  G + V   VV    G   ++YR+FN+   
Sbjct: 361 TIRSRYQALKQLLALDKNIERMECFDISHTQGEATVASCVVFDTEGPRPSEYRRFNIEG- 419

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A M   + RRF +LI  +                 PDV+I+DGGKGQ+S  +
Sbjct: 420 -ITPGDDYAAMEQAVTRRFKRLIDAQ---------------LLPDVLIIDGGKGQVSIVK 463

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHR 539
            VL  L VE+ IT++ ++KGP R AG EK   V +    VL      L+ +Q +RDEAHR
Sbjct: 464 RVLTSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHLLQHIRDEAHR 522

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HRK+R+K    S L+ I G+G  R++ LLQ FG ++ ++++  E +  ++GIS++
Sbjct: 523 FAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKAPLEEICKVQGISEQ 582

Query: 599 IACKIYNHFHK 609
           +A +I+ HFH 
Sbjct: 583 LAKRIHEHFHP 593


>gi|295839538|ref|ZP_06826471.1| excinuclease ABC subunit C [Streptomyces sp. SPB74]
 gi|197696882|gb|EDY43815.1| excinuclease ABC subunit C [Streptomyces sp. SPB74]
          Length = 818

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 183/623 (29%), Positives = 303/623 (48%), Gaps = 38/623 (6%)

Query: 23  LYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
           +YVGKA +L++R+ +Y     N   R   M++   ++ +TV  TEVEAL LE + IK   
Sbjct: 2   IYVGKAKSLRQRLANYFQDLANLHPRTRTMVTTAASVEWTVVSTEVEALQLEYSWIKEYD 61

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRT 141
           PRFN+  RDDKS+PY+ +T   + P     R +      YFGP+    A+  T++ L R 
Sbjct: 62  PRFNVKYRDDKSYPYLAVTMNEEFPRAQVMRGAKRKGVRYFGPYGHAWAIRDTVDLLLRV 121

Query: 142 FFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNL 198
           F +R+C+  VF++     RPCLL  I +CS PC G IS E + +   +   F++G   + 
Sbjct: 122 FPVRTCSSGVFKNAARTGRPCLLGYIDKCSAPCVGRISPEDHRDLAEDFCHFMAGHTGHY 181

Query: 199 KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLAC 255
             ++   M +A    +YE A   RD + AL+     +  +       D  +L  ++  A 
Sbjct: 182 LRRLEERMTEAAEDMEYERAARLRDDVGALTRAMEKSAVVLADATDADLIALAEDELEAA 241

Query: 256 IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENILLSEEAEET 312
           +Q      G+ RG   +        T   ++ + L+Q Y ++     P+ +L+    E  
Sbjct: 242 VQIFHVRGGRVRGQRGWVTDKVEAVTTGDLVEHALQQLYGEERGDSVPKEVLVPALPEPV 301

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS----HQMILKD 368
             ++    ++ G +V + VP++G+KR ++E    NA +S     +   S        L++
Sbjct: 302 RPVQEWLSERRGAQVSLRVPQRGDKRALMETVERNAQQSLVLHKTKRASDLTTRSRALEE 361

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
                 L  +P RIE YD SH+ G   V  MVV  +    K++YR+F +     + QDD 
Sbjct: 362 IAAALDLDGVPLRIECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIKG--FEGQDDV 419

Query: 429 AMMRMVLERRFSQLIKNEENLNF---------------HPKKQEYSFPSWPDVVILDGGK 473
             M  V+ RRF + +   E                       +   F   P ++++DGG+
Sbjct: 420 RSMHEVITRRFRRYLAEREKTGEWTEEELDGPVESGGLDEDGRPKRFAYPPQLLVVDGGQ 479

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q++AA+  L +L +++ + +  +AK  +     E +   + + +VL      LY +QR+
Sbjct: 480 PQVAAARRALDELGIDD-VAVCGLAKRLE-----EVWVPGEEDPVVLPRSSEGLYLLQRV 533

Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT  R +R K     PLDE+ G+G  RK+ LL+ FG+VK +  ++ E +  +
Sbjct: 534 RDEAHRFAITYQRSKRAKRFRAGPLDEVPGLGQSRKQALLKHFGSVKKLRAATIEQICEV 593

Query: 593 EGISKKIACKIYNHFHKNTSHTP 615
            GI +K A  I   F ++    P
Sbjct: 594 PGIGRKTAETILATFARSEPGAP 616


>gi|91788931|ref|YP_549883.1| excinuclease ABC subunit C [Polaromonas sp. JS666]
 gi|119367682|sp|Q128Q7|UVRC_POLSJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91698156|gb|ABE44985.1| Excinuclease ABC subunit C [Polaromonas sp. JS666]
          Length = 666

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 215/662 (32%), Positives = 327/662 (49%), Gaps = 74/662 (11%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D  G VLYVGKA NL+KR+ SY   N+   RI HM+++I  +  TV  +
Sbjct: 20  LPAMPGVYRYFDAEGGVLYVGKARNLKKRVSSYFQKNHGATRIGHMVTKIVRMETTVVRS 79

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK-----------IPALYKHRDS 114
           E EALLLE N+IK L P++NIL RDDKS+PY+ +T                P +  +R +
Sbjct: 80  EAEALLLENNLIKTLNPKYNILFRDDKSYPYLKLTAVQPSEAGSAPVATAFPRIAYYRGA 139

Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
              +  YFGP+ S  AV+ T+  LQ+ F LR+C D+VF +RTRPCLL+QIKRCS PC G 
Sbjct: 140 VEKKHRYFGPYPSAWAVKDTMLLLQKVFRLRTCEDTVFNNRTRPCLLYQIKRCSAPCVGH 199

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           +S E+Y      A++FL G    +  ++ R M     + ++E A   R++++ALS + + 
Sbjct: 200 VSPEQYALDTANAERFLQGQTQEILTELERKMLAHADRLEFEQAAELRNQMSALSKVLHQ 259

Query: 235 NDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------- 284
                     +D  ++      AC+       G++ G   +F      +T+         
Sbjct: 260 QSMEIGGDKDVDILAVKVQGGKACVNLAMVRGGRHLGDRPYFPTHVENATDVAALDAQAD 319

Query: 285 --------------------------------ILSYFLRQFYTDKPCPENILLSEEAEET 312
                                           +L  F+ Q Y D P P  ++ SE  ++ 
Sbjct: 320 EGAGGGGPESDDRAGKTVVPLPARPAKSLEALVLEAFIAQHYIDVPVPPTLVCSEPVDKD 379

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK 372
            +  +    Q G K+      + ++R  ++ A  NA     + L+ + S Q   +   + 
Sbjct: 380 LISAL--AAQTGSKITAIHQPREQRRIWLDMAQKNAALQLARLLAEQGSQQARTRALAEA 437

Query: 373 FAL---PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429
             L        RIE +D SH  G S     VV   +    ++YR++N+    +   DD A
Sbjct: 438 LDLSLDNLDALRIECFDISHTAGESTQASCVVFQGHKMQNSEYRRYNIEG--ITPGDDYA 495

Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
            MR VL RR+++L +   N N             PD+V++DGGKGQ+S A+ V  +L ++
Sbjct: 496 AMRQVLTRRYTKLAEAARNGN----------ARLPDLVLVDGGKGQVSMAREVFVELGLD 545

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
             + I  + KG  R  G+E+     G   + L      L  I ++RDEAHRFAIT  R R
Sbjct: 546 LGL-IAGVEKGEGRKVGLEELVFADGREKVYLGRDSAALMLIAQIRDEAHRFAITGMRAR 604

Query: 549 RKKAAY--SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R K     S L++I GIGP R+  LLQ FG ++ I+ +S E +A+++GISK +A +IY  
Sbjct: 605 RAKVRVGGSKLEDIAGIGPKRRASLLQRFGGIRGIASASAEDIATVDGISKDLAEEIYRA 664

Query: 607 FH 608
            H
Sbjct: 665 LH 666


>gi|237746710|ref|ZP_04577190.1| excinuclease ABC subunit C [Oxalobacter formigenes HOxBLS]
 gi|229378061|gb|EEO28152.1| excinuclease ABC subunit C [Oxalobacter formigenes HOxBLS]
          Length = 634

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 216/620 (34%), Positives = 337/620 (54%), Gaps = 35/620 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D   ++LYVGKA +L KR+ +Y    + + RI  M+ +I  ++ TVT 
Sbjct: 34  QLPHLPGVYRFFDKNDKLLYVGKARDLVKRVSTYFQKTSPSPRIAMMVGRIARLQTTVTR 93

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +EVEAL+LE+N+IK L P +NI+ RDDKS+PY+ +T + ++P +  +R +   +  YFGP
Sbjct: 94  SEVEALILESNLIKTLHPHYNIIFRDDKSYPYLKVTGQ-RVPRIVYYRGTVDRKNEYFGP 152

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +  AV +TI  LQ+ F LR+C DSVFR+RTRPCLL+QI RCSGPC G I    Y   V
Sbjct: 153 FPNASAVRETIQILQKVFRLRTCEDSVFRNRTRPCLLYQIGRCSGPCAGLIGENAYRRDV 212

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    +  ++   M     + ++E A + R+++AALS + +      +    
Sbjct: 213 EHAVRFLRGEQTAILGELQEKMEGYARRLEFEEAALVRNQIAALSQVLHQQSMETDNEAE 272

Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL-------KTDSESTNAQILSYFLRQF 293
             D  ++   +  ACI       G++ G    F        + + E    +IL  FL Q 
Sbjct: 273 DVDIIAVVVRQGCACINLAMVRGGRHLGDHAVFPGNMGSAVENEGEKRETRILKAFLAQH 332

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
           Y D+  P  ++L+ + +E +L+     +Q G+++ +    QG++R  +E A  NA  +  
Sbjct: 333 YIDRQIPRTLVLNLDFDEPALMMA-LSEQAGHRIHLVFQPQGQRRLWLEMAQKNAEIALE 391

Query: 354 QKLST---EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           + LS    ++S    L D  K         RIE +D SH  G +     VV        +
Sbjct: 392 RVLSKSGTQLSRVKALIDLMKLDIDDPDSLRIEAFDISHTQGEAVQASCVVFHHCAMQNS 451

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YR++N+    +   DD A M+ VL RR+ +L+ +E+ +              P +V++D
Sbjct: 452 EYRRYNI--AGITPGDDYAAMKQVLTRRYGKLVGHEDLM--------------PHIVLVD 495

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYF 529
           GGKGQ+S A  V  +L  +  + I+ +AKG  R  G+E      G     L     +L  
Sbjct: 496 GGKGQVSMASQVFAELGHDLGL-IVGVAKGEGRKVGLETLVYADGRLPQELGKDSGVLML 554

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I ++RDEAHRFAIT  R +R KK   S L+EI G+G  R++ LL  FG+V+ I+ +S + 
Sbjct: 555 IAQIRDEAHRFAITGMRAKRDKKRQASRLEEIEGVGAKRRQRLLARFGSVRGIADASVDD 614

Query: 589 LASIEGISKKIACKIYNHFH 608
           LA++EGIS ++A +IY+  H
Sbjct: 615 LATVEGISHRLAQQIYDQLH 634


>gi|148272930|ref|YP_001222491.1| excinuclease ABC subunit C [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830860|emb|CAN01804.1| putative excinuclease ABC subunit C [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 642

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 192/640 (30%), Positives = 307/640 (47%), Gaps = 43/640 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
           ++ ++P  PGVY+  D A RVLYVGKA NL+ R+ +Y     +   R   M++    + +
Sbjct: 12  AAGEIPTSPGVYRFRDAADRVLYVGKANNLRARLANYFAPLESLHERTRRMVTSAAGVEW 71

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  +E EAL LE   IK   P FN+  RDDKS+PY+ +T     P +   R+       
Sbjct: 72  TVVGSEFEALQLEFTWIKEFDPPFNVKFRDDKSYPYLAVTLGEDYPRVMVTRNRKIRGAK 131

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+  V A+ +T++ L + F +RSC++S F+      RPCLL  I RC+ PC G +S 
Sbjct: 132 YFGPYTKVWAIRETVDHLLKVFPMRSCSESTFKRARQTNRPCLLGDIGRCAAPCVGRVSD 191

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E   +   F++G +     ++ + M  A  + DYE+A  HRD + AL    +    
Sbjct: 192 EEHREIADDFVSFMAGNDSKYVGQLTQRMKDAAAEMDYEAAARHRDDIGALEAALSKTAV 251

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +++     D F +  ++  A +Q      G+ RGT T+ +  + +    +++   L   Y
Sbjct: 252 VFDDRVDADVFGIAADELAAAVQQFMVRGGRIRGTRTWVVDKELDIGIGELVETVLHNAY 311

Query: 295 TDKPCPENILLSEEAEETSLLEISFF----------------KQYGYKVKITVPKQGEKR 338
            D+  P   +L  E          +                 +   ++V + V ++G+K 
Sbjct: 312 EDEAHPPREVLVPELPADDAELELWLSQRRAAGEDDGTVRRGRPSSWQVDLRVAQRGDKA 371

Query: 339 KIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394
            +   A  NA  +     +   S        L D  +   +P  P R+E YD SH+ G +
Sbjct: 372 ALAHTAATNAQNALMLYKTRRSSDFTTRSKALADIQEALGMPDAPLRMECYDVSHLSGTN 431

Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------N 448
            V  MVV  +    K+QYR+FN+      + DD   +  V+ RR + L K  E       
Sbjct: 432 IVASMVVFEDGLPRKDQYRRFNIAD----STDDTESIHQVITRRLAYLGKEAEVPADAAP 487

Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508
                      F   P+++I+DGG+ Q++AAQ  L++  V   I +  IAK  +     E
Sbjct: 488 PELGEAPPVNKFSYSPNLLIVDGGQPQVAAAQRALEESGVTG-IQLAGIAKRLE-----E 541

Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRK 568
            +       ++L      L+ IQR+RDEAHRFAIT  R RRK+   S L+EI G+GP R 
Sbjct: 542 IWLPDSDYPIILPRNSDALFLIQRIRDEAHRFAITHQRARRKRDITSVLNEIPGLGPSRV 601

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + LLQ FG+V  + ++  E +A++  I   +A  +Y    
Sbjct: 602 QRLLQQFGSVAKLKQAEVEEIAAVRTIGPTLARAVYERLR 641


>gi|121604533|ref|YP_981862.1| excinuclease ABC subunit C [Polaromonas naphthalenivorans CJ2]
 gi|120593502|gb|ABM36941.1| Excinuclease ABC subunit C [Polaromonas naphthalenivorans CJ2]
          Length = 649

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 217/644 (33%), Positives = 330/644 (51%), Gaps = 56/644 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D  G VLYVGKA NL+KR+ SY   N+   RI HMI++I  +  TV  +
Sbjct: 21  LPPLPGVYRYFDEQGGVLYVGKARNLKKRVTSYFQKNHGGTRIGHMITKIVRMETTVVRS 80

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKH-----------KIPALYKHRDS 114
           E EALLLE N+IK L P++NIL RDDKS+PY+ +T                P +  +R +
Sbjct: 81  EAEALLLENNLIKTLNPKYNILFRDDKSYPYLKLTAAQTQPKGGAPSATAYPRIAYYRGA 140

Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
              +  YFGP+ S  AV+ TI  LQ+ F LR+C D+VF +RTRPCLL+QIKRCS PC G 
Sbjct: 141 VEKKHHYFGPYPSSWAVKDTILLLQKVFRLRTCEDTVFNNRTRPCLLYQIKRCSAPCVGH 200

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           +S E+Y      A++FL G    +  ++ R M     + ++E A   R++++ALS I + 
Sbjct: 201 VSPEQYALDTANAERFLQGQTQEILGELERKMLAHADRLEFEQAAELRNQMSALSKILHQ 260

Query: 235 NDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------- 284
                     +D  ++      AC+       G++ G   +F      + +         
Sbjct: 261 QSMEVGGDKDVDILAVKVQGGKACVNLAMVRGGRHLGDRPYFPTHVENAADVAALDAEPE 320

Query: 285 --------------ILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKIT 330
                         +L  F+ Q Y D P P  +++SE  ++  +  +   +Q G +V   
Sbjct: 321 APADQPKEKSIEALVLEAFIAQHYIDVPVPPTLVVSEPVDKHLMAAL--AEQTGSRVAAV 378

Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP---KRIEIYDN 387
              + ++R  +E A  NA     + L+ + S Q   +   +   LP       RIE +D 
Sbjct: 379 HQPREQRRIWLEMAQKNAGLQLARLLAEQGSQQARTRALAEALELPLDNLDALRIECFDI 438

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447
           SH  G S     VV  E+    ++YR++N+    +   DD A MR VL RR+++L +   
Sbjct: 439 SHTAGESTQASCVVFKEHKMQSSEYRRYNIEG--ITPGDDYAAMRQVLMRRYTKLAEAAR 496

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           N             + PD+V++DGGKGQ++ A+ V  +L ++  + I  + KG  R  G+
Sbjct: 497 N----------GEATLPDLVLVDGGKGQVAMAREVFVELGLDLGL-IAGVEKGEGRKVGL 545

Query: 508 EKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIG 564
           E+     G + + L      L  I ++RDEAHRFAIT  R RR K     S L++I GIG
Sbjct: 546 EELVFADGRDKVYLGRDSAALMLIAQIRDEAHRFAITGMRARRAKVRVGGSRLEDIAGIG 605

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           P ++  LLQ FG V+ I+ +S E +A ++GIS ++A +IY   H
Sbjct: 606 PKKRASLLQRFGGVRGIASASVEDIAMVDGISTELAEEIYRALH 649


>gi|284047896|ref|YP_003398235.1| excinuclease ABC, C subunit [Acidaminococcus fermentans DSM 20731]
 gi|283952117|gb|ADB46920.1| excinuclease ABC, C subunit [Acidaminococcus fermentans DSM 20731]
          Length = 618

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 185/617 (29%), Positives = 312/617 (50%), Gaps = 39/617 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVTC 64
           +P  PGVY M D +G+V+YVGKA  L+ R++SY    +  + ++  + + + +I   VT 
Sbjct: 12  LPNAPGVYIMHDASGKVIYVGKAVILKNRVRSYFRPASQVSPKVRAINAHVASIETIVTA 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E+EAL+LE N+IK+ +PR+NI L+DDK++PY+ IT     P +   R        Y+GP
Sbjct: 72  SEMEALILECNLIKKYRPRYNIDLKDDKTYPYLKITVGEAYPRMVLTRRVLKDGARYYGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           FA   A+  T+  ++  F LR C +    +  RPCL + + RC  PCTG++   +Y + V
Sbjct: 132 FADAGALRDTMKLIRTMFPLRHCRNL---NAKRPCLQYHLHRCLAPCTGKVPVSEYRQMV 188

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--DSIYNRM 242
                 L G    L++ +   M QA+   ++E+A  +RD L +L  +       +     
Sbjct: 189 DAVLLLLDGKVTQLEKDLTAKMQQASDNLEFEAAARYRDSLLSLRKLAEKQKATTESGDR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPE 301
           D   L  + +  C+Q  F   G+  G  +FFL  +    + ++L  FL+Q+Y +    P 
Sbjct: 249 DVVGLAMDDSGVCVQVFFIRSGKILGRDSFFLDQEIGEPDGEVLGDFLKQYYHENHRPPR 308

Query: 302 NILLSEEAEETS--LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST- 358
            IL+S E  ++   LL           V + VP++G K  ++  A+ NA ++  ++L   
Sbjct: 309 EILVSAELADSDRTLLGQWLSSLCEKPVNLLVPQRGLKHDLVLMAVNNAKKNLEERLRRG 368

Query: 359 ---EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                +     +   K   L    +R++ +D SH  G   V  MVV  +    K  YR++
Sbjct: 369 HASGQTGLDAAEQLQKALGLAKPLERMDCFDISHNQGRETVASMVVFRDGVPSKKDYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            L   +    DD   M+ V+ RR+  L                     P ++I+DGGKGQ
Sbjct: 429 KLRSTEG-KPDDFKSMQEVVYRRYRDLED------------------LPSLIIIDGGKGQ 469

Query: 476 LSAAQGVLKKLNV-ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           LS+A  V++ L +    + +I +AK  +     E F      +++L+   P L+ IQ +R
Sbjct: 470 LSSACEVIRGLGITPEEVPVIGLAKREE-----EIFKEGAHTSILLDKMSPALHLIQHIR 524

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HRKR  K+   S LD + G+GP R+  L + FG++  + ++S E LA+++
Sbjct: 525 DEAHRFAITYHRKRLGKRNLVSVLDHLEGLGPKRRAALWKRFGSLDAMRQASVEDLAAVD 584

Query: 594 GISKKIACKIYNHFHKN 610
            +++ +A +++     +
Sbjct: 585 TMNRTVAERVHTFLQGS 601


>gi|320093539|ref|ZP_08025431.1| excision endonuclease subunit UvrC [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319979495|gb|EFW10965.1| excision endonuclease subunit UvrC [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 678

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/667 (31%), Positives = 322/667 (48%), Gaps = 63/667 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y     N   R   M++    +++TV 
Sbjct: 13  DIPTSPGVYRFSDANGRVIYVGKAKNLRNRLANYFQDLANLHPRTQQMVTTAARVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVEAL LE   IK   PRFN++ +DDKS+PY+ +T     P L+  R +      YFG
Sbjct: 73  GNEVEALTLEFTWIKEFNPRFNVMFKDDKSYPYLAVTMGEAYPRLHAVRGARKPGARYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    ++ +TI+ L R F +R+C+  VFR    + RPCLL  I +CS PC G IS E +
Sbjct: 133 PFVQAWSIRETIDQLVRVFPVRTCSPGVFRRARAQGRPCLLGYIDKCSAPCVGRISEEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                E   F+ G    +   + + M  A+   D+E+A   RD +AAL  +   N  +  
Sbjct: 193 RAMALELCSFMQGRAGPVIADLEQQMRSASAALDFETAARLRDDVAALRAVLERNAVVLA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L  ++  A +       G+ RGT  + ++   ++    +++  L Q Y+  
Sbjct: 253 DGTDADVFALATDELDAAVHVFHVRGGRVRGTRGWVVERSDDADEPALIARLLEQVYSQA 312

Query: 298 P-----------------------------CPENILLSEEAEETSLLEISFFKQYGYKVK 328
                                          P  +L+S    + + +E       G +V+
Sbjct: 313 TPDDPPAPGERAQKAEAVSVDDVAHTPTSAIPREVLVSTAPTDRATIEEWLTGLRGGRVR 372

Query: 329 ITVPKQGEKRKIIEQALINAHR----SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEI 384
           + VP++GEK  ++   + NA +     H+++     +    L++   +  LP  P RIE 
Sbjct: 373 VRVPQRGEKAHLMGTVMENARQGLALHHSKRAGDITARAQALEELAAQLDLPGAPLRIEC 432

Query: 385 YDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLI 443
           YD SH MG   V  MVV  +    K+ YR FN+   D     DD A M  VL RRFS+L+
Sbjct: 433 YDVSHTMGTLQVASMVVFEDGAPRKDAYRSFNIRGADGGGAPDDTAAMDEVLTRRFSRLL 492

Query: 444 KNE-------------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490
             E             E+       +   F   PD+V++DGG  Q +AA+  L    V  
Sbjct: 493 AEESGEQGEDEEGVPLESGPVDATGRPRRFSYRPDLVVVDGGPAQAAAARAALD--GVGA 550

Query: 491 RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550
            + +I +AK  +     E +   +   ++L    P LY +Q LRDE+HRFAIT HRKRR 
Sbjct: 551 DVPVIGLAKRLE-----EVWAPGEEFPIILPRTSPALYMLQHLRDESHRFAITKHRKRRS 605

Query: 551 KA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           KA   S LD+I G+GP R+  LL+ FG+V+ +  +S E +A + GI   +A  I +   +
Sbjct: 606 KAQTRSALDKIPGLGPSRQTALLKHFGSVRRLRAASAEQIAQVSGIGPVLAAAIRDSLSE 665

Query: 610 N-TSHTP 615
           + T+ TP
Sbjct: 666 SGTADTP 672


>gi|313624056|gb|EFR94140.1| excinuclease ABC subunit C [Listeria innocua FSL J1-023]
          Length = 603

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 181/622 (29%), Positives = 301/622 (48%), Gaps = 45/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M +A    ++E A   RD++ A+           N     
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L ++ +  ++  +          KI VP++G K+ +++ A  NA  +  +K       
Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K                   PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K+   S LD I G+GP RK+ LL+ FG++K +  +S E +    G+ 
Sbjct: 521 HRFAITFHRQLRSKSGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579

Query: 597 KKIACKIYNH---FHKNTSHTP 615
             +A +++ H   F++   +T 
Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601


>gi|312866699|ref|ZP_07726913.1| excinuclease ABC, C subunit [Streptococcus parasanguinis F0405]
 gi|311097780|gb|EFQ56010.1| excinuclease ABC, C subunit [Streptococcus parasanguinis F0405]
          Length = 611

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 173/620 (27%), Positives = 295/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + + +C            + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHLGQCMAHTVCHKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + +++   MN A    ++E A  +RD + A+  ++     +   
Sbjct: 182 GMAQEVSDFLKGQDDKIIDELKLKMNTAAQNMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 IPNEILIPQDIDEEAVKALVDTKVLK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  K   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSMEKTQGAIENLGKLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+S+++++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYSRVMRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-GLGLDIPIAGLQKNDKHQT-HELLFGDPLQVIELSRTSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K + +S LD I G+GP RK+LL++ F ++  I  ++ E + ++ 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFFSQLDGIEGLGPKRKQLLMKHFKSLTKIKEATVEEIVTV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           GI + +A  +    H+    
Sbjct: 575 GIPRAVAEAVQAKLHQGKQE 594


>gi|307611521|emb|CBX01198.1| hypothetical protein LPW_28971 [Legionella pneumophila 130b]
          Length = 593

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 214/611 (35%), Positives = 330/611 (54%), Gaps = 34/611 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           MLD  G VLYVGKA NL+KR+ SY    N   +   ++SQI +I  +VT +E EALLLE+
Sbjct: 1   MLDEEGTVLYVGKAANLKKRVNSYFSKQNTGVKTRALVSQIKSIEISVTRSETEALLLES 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVDAVEK 133
           N+IK L+P++N+LLRDDKS+PYI +++    P +  +R       G++FGP+  V AV +
Sbjct: 61  NLIKALRPKYNVLLRDDKSYPYIHLSNHPDFPRVELYRSKKKPPSGNFFGPYPGVAAVRE 120

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           TI ++Q+ F +R+C DS F+ R+RPCL +QIKRC+ PC   IS E Y   V +A +FL G
Sbjct: 121 TIVTIQKIFKIRNCRDSYFKARSRPCLQYQIKRCTAPCVHYISPENYKLSVEDAIRFLQG 180

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251
               + +++A  M QA  + ++E A + RD++  L  IQ     +      D  ++    
Sbjct: 181 KCQIILDELAERMKQAVSQLNFEEAAVLRDQIKNLRLIQEQQGVVQLRGDADVIAIEVRP 240

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ---------ILSYFLRQFYTDKP--CP 300
             ACIQ      GQ   + +FF        + +             F+  +Y D     P
Sbjct: 241 GFACIQCVTIREGQVLNSQSFFPTVPYAVLDEELDANSLWQQTFEAFIGFYYLDTSERIP 300

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + I+ ++   E+  LE    ++     KI V  +G K + ++ A+ N   S  + +S   
Sbjct: 301 DLIITNQSITESRSLEYILSQRRSKSCKIQVNPRGVKSRWMDFAVNNLRISVAEYVSKHS 360

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           + +   +   +  AL    +R+E +D SH  G + V   VV    G   ++YR+FN+   
Sbjct: 361 TIRSRYQALKQLLALDKNIERMECFDISHTQGEATVASCVVFDTEGPRPSEYRRFNIEG- 419

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A M   + RRF +LI                    PD++I+DGGKGQ+S  +
Sbjct: 420 -ITPGDDYAAMEQAVTRRFKRLI---------------GAQLLPDILIIDGGKGQVSIVK 463

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHR 539
            VL  L VE+ IT++ ++KGP R AG EK   V +    VL      L+ +Q +RDEAHR
Sbjct: 464 RVLTSLGVED-ITLLGVSKGPSRKAGWEKLILVNENREFVLPEDSKALHLLQHIRDEAHR 522

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HRK+R+K    S L+ I G+G  R++ LLQ FG ++ ++++  E +  ++GIS++
Sbjct: 523 FAITAHRKKRQKTRVESTLESIEGVGAKRRQALLQRFGGLRELAKAPLEEICKVQGISEQ 582

Query: 599 IACKIYNHFHK 609
           +A +IY HFH 
Sbjct: 583 LAKRIYEHFHP 593


>gi|169634575|ref|YP_001708311.1| excinuclease ABC subunit C [Acinetobacter baumannii SDF]
 gi|229557972|sp|B0VLX1|UVRC_ACIBS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|169153367|emb|CAP02488.1| excinuclease ABC subunit C; UvrC with UvrAB is a DNA excision
           repair enzyme [Acinetobacter baumannii]
          Length = 599

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 197/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + + PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   VT 
Sbjct: 15  NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++     P +   R     Q G +FG
Sbjct: 75  SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G +S E Y E 
Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V+ + +FL G    L +++   M QA    ++E A+ +RDRL+ L  +Q           
Sbjct: 195 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299
            D  ++ +   + C+Q      G+  G  ++F          Q+LS F+  FY       
Sbjct: 255 ADILAITYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 313

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++++    +   LE +  +Q+G KV+I    +  + + +E A +N   +   +LS  
Sbjct: 314 PSELIVNTALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNH 373

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
           +          +    P     IE +D SH MG + +   VV  + G  K  YR+F +  
Sbjct: 374 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 431

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR  L RR+ + +                    PD++++DGGKGQL  A
Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 470

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             V+++L +E    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHR
Sbjct: 471 MEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHR 528

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR +R K+ + S L+ I G+GP R+R LL  FG ++ + ++S + L  + G+ + 
Sbjct: 529 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 588

Query: 599 IACKIYNHFHK 609
           +A  IY   H+
Sbjct: 589 MARTIYKILHE 599


>gi|260219737|emb|CBA26582.1| UvrABC system protein C [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 664

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 212/647 (32%), Positives = 328/647 (50%), Gaps = 50/647 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D  G+VLYVGKA +L+KR+ SY   N+   RI HM+S+I  +  TV  +
Sbjct: 24  LPSLPGVYRYFDADGQVLYVGKAISLKKRVSSYFQKNHGGTRIGHMVSKIVRMETTVVRS 83

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIP------------------- 106
           E EALLLE N+IK L P++NIL RDDKS+PY+ +T    +P                   
Sbjct: 84  EAEALLLENNLIKTLNPKYNILFRDDKSYPYLKMTGTPPVPKNMAPAAAAVTARAPQPAE 143

Query: 107 --ALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQI 164
              +  +R +   +  YFGP+ S  AV++ I  +Q+ F LR+C DS+F +RTRPCLL+QI
Sbjct: 144 FARVSYYRGAVEKKHRYFGPYPSAWAVKEAILLMQKVFRLRTCEDSIFANRTRPCLLYQI 203

Query: 165 KRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
           KRCSGPC G I    Y + V  A++FL G   ++   +   M     K ++E A   R++
Sbjct: 204 KRCSGPCVGHIQPLDYAQDVANAERFLRGEAQDVMRGLESRMMAHAEKLEFEKAAELRNQ 263

Query: 225 LAALSHIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281
           +AALS++ +           +D  ++      AC+       G++ G   +F     +++
Sbjct: 264 VAALSNVLHQQSVDNVSDRDVDILAVKVQGGKACVNLAMVRGGRHLGDRPYFPVHVEDAS 323

Query: 282 NAQIL--------------SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKV 327
             +                  F+ Q Y   P P  +++SE   +  +  +   +Q G K 
Sbjct: 324 AMESAEEGLATASVEVQVLEAFIAQHYIQVPMPSVLVVSEPVSKGLMQAL--AEQTGVKA 381

Query: 328 KITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFAL---PHIPKRIEI 384
                 + ++R  ++ A  NA     + L+ E S Q   +       L        RIE 
Sbjct: 382 SAIHQPREQRRAWLDMAQTNAGLQLARLLAEEGSQQARTRALADALDLALENLDELRIEC 441

Query: 385 YDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIK 444
           +D SH  G +     VV  ++     +YR+FN+  + +   DD A MR VL RR+S++  
Sbjct: 442 FDISHTAGEATQASCVVFQQHKMQNAEYRRFNI--DGITGGDDYAAMRQVLTRRYSKI-A 498

Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504
                  H      +    PD+V++DGGKGQ+S A+ V + L ++  + I+ + KG  R 
Sbjct: 499 EAIREAKHSGTPPSNSARLPDLVLVDGGKGQVSMAKEVFESLGLDLSL-IVGVEKGEGRK 557

Query: 505 AGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEIN 561
            G+E+     G + + L      L  + ++RDEAHRFAIT  R  R K     S L+EI 
Sbjct: 558 VGLEELVFADGRDKVYLGADSAALMLVAQIRDEAHRFAITGMRAARAKVRTGGSKLEEIP 617

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           GIGP R+  LLQ FG V+ + ++S + +AS+EGIS+++A +IY   H
Sbjct: 618 GIGPKRRARLLQRFGGVRGVEQASAQDIASVEGISRELAEEIYRALH 664


>gi|46907453|ref|YP_013842.1| excinuclease ABC subunit C [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|67461980|sp|Q720J5|UVRC_LISMF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|46880721|gb|AAT04019.1| excinuclease ABC, C subunit [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 603

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 182/622 (29%), Positives = 301/622 (48%), Gaps = 45/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M +A    ++E A   RD++ A+           N     
Sbjct: 187 EIVTFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L ++ +  ++  +          KI VP++G K+ +++ A  NA  +  +K       
Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K E                 PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEE--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +    G+ 
Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579

Query: 597 KKIACKIYNH---FHKNTSHTP 615
             +A +++ H   F++   +T 
Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601


>gi|218135110|ref|ZP_03463914.1| hypothetical protein BACPEC_03015 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990495|gb|EEC56506.1| hypothetical protein BACPEC_03015 [Bacteroides pectinophilus ATCC
           43243]
          Length = 640

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 197/642 (30%), Positives = 323/642 (50%), Gaps = 43/642 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++Y+GKA +L+ R++ Y  S+ N + +I HM+S I++  +
Sbjct: 7   ELKKLPSKPGVYIMHDKTDAIIYIGKAVSLKNRVRQYFQSSRNLSVKIQHMVSNIDHFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +L+DDKS+P+I +T   K P +   R     +  
Sbjct: 67  IITDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKVTVNEKYPRVLFARSMKKDKSR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+ TI  L R + +R+C+  +     + RPCL + I +CS PC G IS E
Sbjct: 127 YFGPYTSAGAVKDTIELLCRLYRIRTCSRKLPADMCKDRPCLNYHINQCSAPCQGYISEE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y E V +   FL+G    +  K+   M +A+ K +YE A  +RD + ++  I       
Sbjct: 187 EYKESVRQVIDFLNGNYSEILNKLKDKMMEASDKMEYEDAAQYRDLITSVKQIAQKQKIT 246

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           DS +   D  +     + A +Q  F   G+  G   F +   +  +  +I+  F++Q+Y 
Sbjct: 247 DSDFEDRDVIACAIQGDDAVVQVFFIRGGKLLGREHFHMNVAASDSRMEIVQEFMKQYYG 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  I++ +E  E  ++      + G KV I VPK+G + K++E A  NA      
Sbjct: 307 GTPYIPGIIMVQDELSEKDIISEWLTSRRGLKVSILVPKKGTREKMVELAFKNAQMVLDK 366

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
            + +  + +      +++      L    KR+E YD S+  G  +VG MVV  +     N
Sbjct: 367 DNERIKNEQKKTVGAMQEIADWLDL-GTIKRVEAYDISNTNGIESVGSMVVFEDGRPKNN 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE------------- 457
            YRKF +    VK  DD   MR VL RRF++ ++    L     K               
Sbjct: 426 DYRKFRIKT--VKGPDDYKSMREVLTRRFTRGMEERRILVEQEHKDRLLAEQEIVIDEAA 483

Query: 458 ----------YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
                       F  +PD++++DGG+GQ++ A  VL +L ++  I +  + K        
Sbjct: 484 GGETKEKIHLAGFNVYPDLIMMDGGRGQVNIALDVLNELGLD--IPVCGMVKDDNHRTRG 541

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPL 566
                     + ++        I R++DEAHRFAI  HR  R KA   S LD+I G+GP 
Sbjct: 542 ---LYYNNVEIPIDRHSEGFKLITRVQDEAHRFAIEYHRSLRSKAQVSSVLDDIEGVGPA 598

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R++ L++ F  + +I  +  E L   +GI++++A  IY +FH
Sbjct: 599 RRKALMKHFLDINVIRNADVEELMQADGITRQVAGNIYRYFH 640


>gi|147669666|ref|YP_001214484.1| excinuclease ABC subunit C [Dehalococcoides sp. BAV1]
 gi|189038046|sp|A5FQB7|UVRC_DEHSB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|146270614|gb|ABQ17606.1| Excinuclease ABC subunit C [Dehalococcoides sp. BAV1]
          Length = 607

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 213/613 (34%), Positives = 330/613 (53%), Gaps = 27/613 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY M +  G ++YVGKA  L+ R+KSY    +  T +   ++SQIN + + +T
Sbjct: 12  SLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPSRLTPKTCQLVSQINELEYLIT 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EAL+LE N+IKR +P FN+ L+DDK FPY+ IT   K P +Y  R  +   G YFG
Sbjct: 72  GSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYITRSMADDGGRYFG 131

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFA+  +V  T+  L+  F  RSC  +    R+RPCL + I +C  PCTG+IS   Y   
Sbjct: 132 PFANTRSVRHTLQVLKELFRFRSCNRTEPEKRSRPCLEYDIHQCLSPCTGKISKSDYDHL 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYN 240
           + +A  FL G    + + + R MN+A+ + DYE+A + RD++A++  +         +  
Sbjct: 192 ISQAILFLEGKQDQVLKLLIRLMNEASARLDYETAALRRDQIASIKEVIEGQQLAARVTG 251

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299
             D  +     +L+ +Q  F   G+  G  +F L+   E     ILS F +QFY      
Sbjct: 252 EQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFCLQGTREEKPGDILSEFAKQFYHSSTQI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355
           P  I+      +  +LE    ++ G KV IT   +G+ +++I     NA     ++  + 
Sbjct: 312 PPKIVTQYPVSDREILEKWLSQRRGDKVHITAGLRGQPKELINIVAENAREQLKQARIKN 371

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS+ ++    L +      L   P+RIE YD S+I G +AVG MVV       K  YR+F
Sbjct: 372 LSSSVTLTDALAELQTALGLSLPPQRIEGYDISNIQGTNAVGSMVVFENGKPQKAHYRRF 431

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    VK  DD +M++ V+ RRF ++ + +            SF   P ++++DGGKGQ
Sbjct: 432 RIKT--VKGADDFSMLKEVISRRFGRVHRED---------AGESFARLPSLMLIDGGKGQ 480

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           LS+ +  L KL +E +  +I +AK  +     E +   K E + L    P L  +QR+RD
Sbjct: 481 LSSVKETLDKLGLEGQ-AVIGLAKEFE-----EIYLPHKSEPIRLAANSPALQLLQRVRD 534

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFA+  H   R+K+   S LD I G+GP R+RLL+++FG+V  I ++S E L+ ++G
Sbjct: 535 EAHRFALGYHLHIRQKSGLTSALDGIPGVGPSRRRLLIKTFGSVAGIRQASFEKLSQVKG 594

Query: 595 ISKKIACKIYNHF 607
           I++ +A  I    
Sbjct: 595 INQALALSIKELL 607


>gi|86608727|ref|YP_477489.1| excinuclease ABC subunit C [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|119367851|sp|Q2JM21|UVRC_SYNJB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|86557269|gb|ABD02226.1| excinuclease ABC, C subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 623

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 202/626 (32%), Positives = 310/626 (49%), Gaps = 37/626 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61
            +++P  PGVY M D   ++LYVGK+  L+ R++SY   +++ + RI  M++Q+  I F 
Sbjct: 16  LKEIPAEPGVYLMRDATDQILYVGKSKKLRSRVRSYFRFTSDLSPRIQRMVAQVCEIEFI 75

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-- 119
           VT  E EAL LE N+IK  +P +N+LL+DDK +PY+ IT     P LY  R     +   
Sbjct: 76  VTDNESEALALEDNLIKTHQPPYNVLLKDDKKYPYLCITWSEPYPQLYITRHRRLDRNQD 135

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+  V  +  T+  ++R F LR     +++ RT  CL + I RC G C G IS E+
Sbjct: 136 KYYGPYTDVGLLRHTLGLVKRIFPLRQRPKPLYKDRT--CLNYDIGRCPGVCQGLISPEE 193

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +      G    L  ++   M QA  +E+YE+A  +RD++  L  +        
Sbjct: 194 YRKTLTQVAMIFQGQTDELIRELQEKMIQAAEQENYEAAARYRDQIRGLEQLGESQKVSL 253

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  N + ACIQ      G+  G   F  +   +     +       +  
Sbjct: 254 PNSTVSRDALALAMNDSRACIQLFQVRAGKLVGRLGFVAENRGDDPGLILQRALQEHYQY 313

Query: 296 DKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             P   P  IL   E  +   LE    ++ G KV +  P++  K ++IE    NA    T
Sbjct: 314 CDPVEIPSEILTQYELPDHDFLESWLSQKKGRKVSLVAPQRQSKAELIELVERNAQLELT 373

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +           L+   +   LP +P+R+E YD SHI G  AV   VV  +    K  YR
Sbjct: 374 RTQRLADRDAAALERLAEVLDLPDVPRRLEAYDISHIQGSDAVASQVVFIDGLPAKQHYR 433

Query: 414 KFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           ++ +   +V+     D A    V  RRFS++   ++                PD+V++DG
Sbjct: 434 RYKIRNPEVRPGHSDDFASHAEVARRRFSKMTPEDQ----------------PDLVLIDG 477

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQLSA   VL  L ++  + +I++AK  +     E F       L L  +DP    +Q
Sbjct: 478 GKGQLSAVMAVLADLGLD-HLPVIALAKREE-----EIFLPGNPVPLRLPAQDPARLLLQ 531

Query: 532 RLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           RLRDEAHRFA+  HR++RK +   S LDEI G+G  R++LL++ F ++  I  +S + LA
Sbjct: 532 RLRDEAHRFALAFHRQQRKARQHASTLDEIPGLGKYRQKLLMEEFRSIARIQVASEDQLA 591

Query: 591 SIEGISKKIACKIYNHFHKNT-SHTP 615
            + GI  KIA +IY +FH  T + +P
Sbjct: 592 QVPGIGPKIARQIYRYFHPETQAESP 617


>gi|47094129|ref|ZP_00231851.1| excinuclease ABC, C subunit [Listeria monocytogenes str. 4b H7858]
 gi|226223834|ref|YP_002757941.1| excinuclease ABC subunit C [Listeria monocytogenes Clip81459]
 gi|254823512|ref|ZP_05228513.1| excinuclease ABC [Listeria monocytogenes FSL J1-194]
 gi|254852897|ref|ZP_05242245.1| excinuclease ABC [Listeria monocytogenes FSL R2-503]
 gi|254932888|ref|ZP_05266247.1| excinuclease ABC [Listeria monocytogenes HPB2262]
 gi|255521233|ref|ZP_05388470.1| excinuclease ABC subunit C [Listeria monocytogenes FSL J1-175]
 gi|300764383|ref|ZP_07074377.1| excinuclease ABC, C subunit [Listeria monocytogenes FSL N1-017]
 gi|259710343|sp|C1L2D9|UVRC_LISMC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|47017496|gb|EAL08307.1| excinuclease ABC, C subunit [Listeria monocytogenes str. 4b H7858]
 gi|225876296|emb|CAS05005.1| Putative excinuclease ABC subunit C [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606232|gb|EEW18840.1| excinuclease ABC [Listeria monocytogenes FSL R2-503]
 gi|293584442|gb|EFF96474.1| excinuclease ABC [Listeria monocytogenes HPB2262]
 gi|293592732|gb|EFG00493.1| excinuclease ABC [Listeria monocytogenes FSL J1-194]
 gi|300515035|gb|EFK42088.1| excinuclease ABC, C subunit [Listeria monocytogenes FSL N1-017]
 gi|328466628|gb|EGF37763.1| excinuclease ABC subunit C [Listeria monocytogenes 1816]
 gi|328475253|gb|EGF46034.1| excinuclease ABC subunit C [Listeria monocytogenes 220]
 gi|332311619|gb|EGJ24714.1| UvrABC system protein C [Listeria monocytogenes str. Scott A]
          Length = 603

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 182/622 (29%), Positives = 301/622 (48%), Gaps = 45/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M +A    ++E A   RD++ A+           N     
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L ++ +  ++  +          KI VP++G K+ +++ A  NA  +  +K       
Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K E                 PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEE--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +    G+ 
Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579

Query: 597 KKIACKIYNH---FHKNTSHTP 615
             +A +++ H   F++   +T 
Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601


>gi|315170095|gb|EFU14112.1| excinuclease ABC subunit C [Enterococcus faecalis TX1342]
          Length = 598

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++S+I++  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+I +  P++NI+L+DDK++P+I IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V+A  +T   L R F LR C       +  PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           E K FLSGG+  +++++   M  A    ++E A   RD++ A+  +       +      
Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             +++ A +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSTFPFYDDASEAFLTFIGQFYQENEHFVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ ++ ++ S+  +   K       +  P++GEK+K+++ A  NA    +      +  
Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    KN+YRK+ + 
Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+S+++K                  +PD++++DGGKGQ+  
Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  +AK  K     E  F    E + L       + +QR++DE H
Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPDLEVVPLERNSQEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L    G+ +
Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578

Query: 598 KIACKIYNHFHKNTSH 613
            +A  +Y H H+ T+ 
Sbjct: 579 TVAKNVYRHLHQETTS 594


>gi|238760650|ref|ZP_04621776.1| UvrABC system protein C [Yersinia aldovae ATCC 35236]
 gi|238701139|gb|EEP93730.1| UvrABC system protein C [Yersinia aldovae ATCC 35236]
          Length = 588

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 210/606 (34%), Positives = 324/606 (53%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D AG V+YVGKA +L+KR+ SY      + +   ++  I  I  TVT TE+EALLLE 
Sbjct: 1   MYDKAGTVIYVGKAKDLKKRLTSYFRVQVASRKTETLVKNIAQIDVTVTHTEMEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPLIFLS-ADAHPRLTIHRGAKHEKGEYFGPFPNSYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQR F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y   V   + FL G
Sbjct: 120 LALLQRLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVSGLVSDEEYQRQVDYVRLFLLG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251
            +  +  ++   M +A+    +E A   RD++ A+  +        +    D   +  + 
Sbjct: 180 KDQQVLTQLISRMEEASRLLHFEDAAHIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            LAC+   F   G+  G+ +++ K  + +   +++  F+ QFY      +  P  ILL  
Sbjct: 240 GLACVHVLFIRQGKVLGSRSYYPKVPAGTELNEVVQTFVGQFYLQGSQIRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +LS + +    +K
Sbjct: 300 TLAEKELLATSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALVTRLSQQSTIHQRMK 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           +  K   L     R+E +D SH MG   V   VV   NG V+++YR++N+  + +   DD
Sbjct: 360 ELAKILKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRYNI--SGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL+RR+ + +                    PDV+ +DGGKGQLS A  V   LN
Sbjct: 417 YAAMSQVLKRRYGKALD---------------SSKIPDVIFIDGGKGQLSQAFDVFASLN 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ IQ +RD++H  AIT
Sbjct: 462 VSWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHLIQHIRDDSHNHAIT 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E +A +  IS+ +A K
Sbjct: 522 GHRQRRSKVKNTSALEMIEGVGPKRRQILLKYMGGLQPLLNASVEEIAKVPSISQALAEK 581

Query: 603 IYNHFH 608
           IYN   
Sbjct: 582 IYNALK 587


>gi|300858531|ref|YP_003783514.1| UvrABC system protein C [Corynebacterium pseudotuberculosis FRC41]
 gi|300685985|gb|ADK28907.1| UvrABC system protein C [Corynebacterium pseudotuberculosis FRC41]
 gi|302206243|gb|ADL10585.1| UvrABC system protein C [Corynebacterium pseudotuberculosis C231]
          Length = 675

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 180/669 (26%), Positives = 312/669 (46%), Gaps = 69/669 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y    +    R   M++  +++ +TV 
Sbjct: 13  SIPTDPGVYKFRDSHGRVVYVGKAKNLRSRLSNYFQDLSVLHPRTRQMVTTASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IK+  PRFN+  RDDK++P + ++   + P  + +R        YFG
Sbjct: 73  SSEVEALQLEYTWIKKFDPRFNVKYRDDKTYPMLAVSVGERFPRAFFYRGPQRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV +T++ L R F +R+C+  VF       RPCLL  I +CS PC G ++ +++
Sbjct: 133 PYSHAWAVRETLDLLTRVFPVRTCSKGVFNRHESLGRPCLLGYIDKCSAPCIGRVTEQEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V+    F++G    +   +   M  A  + D+E A   RD + A+  I      +  
Sbjct: 193 RDIVNGFCSFMAGKTDAVVASLNSQMLTAAEELDFERAARLRDDIHAVQKITEQQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYT 295
                D  ++  +   A IQ      G+ +G   + ++   DSE    ++L  FL +FYT
Sbjct: 253 DGTDADVIAISADDLEASIQLFHVRAGRVKGQRGWIVERTGDSEEELQELLQAFLIRFYT 312

Query: 296 DKP-------------------------------------CPENILLSEEAEETSLLEIS 318
           D                                        P+ +L+     +    +++
Sbjct: 313 DAVELEEETNKEEENVIRRGVDQFSYVDEHLSSHQLRGSMIPKEVLVEIAPLDLEHTKVA 372

Query: 319 FFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFA 374
             +  G  V + VP +G+KR ++E    NA     +   +++    +    L++  +   
Sbjct: 373 LSELRGSLVDLRVPARGDKRALMETVHANAVETLRQHKLKRVGDLTARSAALQELQEALF 432

Query: 375 LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRM 433
           L   P RIE  D SHI G   V  +VV  +    K+ YR++ +         +D A +  
Sbjct: 433 LEEAPLRIECIDISHIQGTDVVASLVVFEDGLPKKSDYRRYKIKDAAGDGHSNDVASIAE 492

Query: 434 VLERRFSQLIKNEENLNFHPK-----------KQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           V+ RRF +  K+   +    +           +    F   P + I+DGG  Q++AA  +
Sbjct: 493 VVRRRFIRHHKDRLTVPEAEEFDGSTFTDETVEHSKRFAYPPQLFIVDGGSPQVAAADAI 552

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
            ++L V N + ++ IAK  +     E +  +  E ++L      +Y +Q++RDEAHRFAI
Sbjct: 553 FEELGV-NDVALVGIAKRLE-----ELWIPQDDEPVILPRNSQAMYLVQQIRDEAHRFAI 606

Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
             HR++R K    S LD I G+G  R+  L++ FG+VK +  +S E + +++G   ++A 
Sbjct: 607 AFHRQQRSKRMRTSALDNIKGLGQTRRTELVKHFGSVKKLKAASVEEITAVKGFGPQLAQ 666

Query: 602 KIYNHFHKN 610
            +++     
Sbjct: 667 NVFDALRAE 675


>gi|16800266|ref|NP_470534.1| excinuclease ABC subunit C [Listeria innocua Clip11262]
 gi|32130305|sp|Q92CH5|UVRC_LISIN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|16413656|emb|CAC96428.1| uvrC [Listeria innocua Clip11262]
          Length = 603

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 181/622 (29%), Positives = 301/622 (48%), Gaps = 45/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M +A    ++E A   RD++ A+           N     
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L ++ +  ++  +          KI VP++G K+++++ A  NA  +  +K       
Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKELVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K                   PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +    G+ 
Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579

Query: 597 KKIACKIYNH---FHKNTSHTP 615
             +A +++ H   F++   +T 
Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601


>gi|327393401|dbj|BAK10823.1| UvrABC system protein C UvrC [Pantoea ananatis AJ13355]
          Length = 588

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/606 (34%), Positives = 334/606 (55%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D +G V+YVGKA +L+KR+ SY  +N  + +   ++S I++I  TVT TE EALLLE 
Sbjct: 1   MYDASGTVIYVGKAKDLKKRLTSYFRTNVGSRKTEALVSNIHHIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+PYI ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPYIFLS-SDVHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+RTRPCL +QI RC GPC    +S E+Y +     + FL+G
Sbjct: 120 LALLQKVFPIRQCENSVYRNRTRPCLQYQIGRCLGPCVAGLVSEEEYAQQTDYVRLFLAG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251
            +  +   + R M  A+    +E A   RD++ A+  +          + +D   + ++ 
Sbjct: 180 KDDQVLNLLVRRMEDASHALRFEEAARLRDQIQAVRRVTEKQFVSNQGDDLDVIGVAYDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            +AC+   F   G+  G+ ++F K  +++  A+++  F+ QFY      +  P  ILL  
Sbjct: 240 GMACLHVLFIRQGKVLGSRSYFPKVPADTDLAEVVQTFVGQFYLQGSEMRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              E  LL  S  +  G +V I    +G++ + ++ A  NA  +   +LS   +    L 
Sbjct: 300 TLPERELLSESLTELAGRRVNIQSKPRGDRARYLKLARTNAGSALKTRLSQHSTIHQRLT 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
              +   L  I  R+E +D SH MG   +   VV  +NG ++  YR++N+    +   DD
Sbjct: 360 ALAEFLELDKIT-RMECFDISHTMGEQTIASCVVFDQNGPLRADYRRYNI--AGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL RR+ + I+ E+                PDV+++DGGKGQL+ A+ V  +L+
Sbjct: 417 YAAMNQVLRRRYGKAIEEEK---------------IPDVILIDGGKGQLAQAKQVFAELD 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   ++R  ++ +AKG  R AG+E  F + +GE + L+   P L+ IQ +RD+AH  AI+
Sbjct: 462 VSWDKSRPILLGVAKGTDRKAGLETLFFEAEGEGISLSPDAPALHVIQHIRDDAHNHAIS 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRK+R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A++ GIS  +A K
Sbjct: 522 GHRKKRAKVKNTSALESIEGVGPKRRQQLLKYMGGLQPLMNASVEEIANVPGISHALAEK 581

Query: 603 IYNHFH 608
           IY    
Sbjct: 582 IYYSLK 587


>gi|260550498|ref|ZP_05824708.1| EsvL protein [Acinetobacter sp. RUH2624]
 gi|260406413|gb|EEW99895.1| EsvL protein [Acinetobacter sp. RUH2624]
          Length = 602

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 196/611 (32%), Positives = 312/611 (51%), Gaps = 32/611 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + + PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   VT 
Sbjct: 18  NLTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++     P +   R     Q G +FG
Sbjct: 78  SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 137

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+  LQ+ F +R C ++ F  R RPCL +QIKRCS PC G +S E Y E 
Sbjct: 138 PYPSAYSARDTLLVLQKLFNVRQCENTYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKED 197

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V+ + +FL G    L +++   M QA    ++E A+ +RDRL+ L  +Q           
Sbjct: 198 VNNSIRFLQGDTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299
            D  ++ +   + C+Q      G+  G  ++F          Q+LS F+  FY       
Sbjct: 258 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 316

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++++    +   LE +  +Q+G KV+I    +  + + +E A +N   +   +LS  
Sbjct: 317 PSELIVNTALPDRKELEEALAQQFGKKVQIKSNVRETRAEWLELAEMNVQHAIKGQLSNH 376

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
           +          +    P     IE +D SH MG + +   VV  + G  K  YR+F +  
Sbjct: 377 LELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 434

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR  L RR+ + +                    PD++++DGGKGQL  A
Sbjct: 435 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 473

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             V++ L ++    +I ++KG  R  G+E      G  + L   +  L+ IQ++RDEAHR
Sbjct: 474 MEVMQDLGLDAF--MIGVSKGEGRKPGLETLHFTDGTKIQLPEDNKALHLIQQVRDEAHR 531

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR +R K+ + S L+ I G+GP R+R LL  FG ++ + ++S + L  + G+ + 
Sbjct: 532 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEV 591

Query: 599 IACKIYNHFHK 609
           +A  IY   H+
Sbjct: 592 MARTIYKILHE 602


>gi|302518404|ref|ZP_07270746.1| excinuclease ABC, C subunit [Streptomyces sp. SPB78]
 gi|302427299|gb|EFK99114.1| excinuclease ABC, C subunit [Streptomyces sp. SPB78]
          Length = 897

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 181/623 (29%), Positives = 303/623 (48%), Gaps = 38/623 (6%)

Query: 23  LYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
           +YVGKA +L++R+ +Y         R   M++   ++ +TV  TEVEAL LE + IK   
Sbjct: 2   IYVGKAKSLRQRLANYFQDLAGLHPRTRTMVTTAASVEWTVVSTEVEALQLEYSWIKEYD 61

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRT 141
           PRFN+  RDDKS+PY+ +T   + P     R +      YFGP+    A+  T++ L R 
Sbjct: 62  PRFNVKYRDDKSYPYLAVTMNEEFPRAQVMRGAKRKGVRYFGPYGHAWAIRDTVDLLLRV 121

Query: 142 FFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNL 198
           F +R+C+  VF++     RPCLL  I +CS PC G IS E + +   +   F++G   + 
Sbjct: 122 FPVRTCSAGVFKNAARTGRPCLLGYIDKCSAPCVGRISPEDHRDLAEDFCHFMAGHTGHY 181

Query: 199 KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLAC 255
             ++   M +A    +YE A   RD + AL+     +  +       D  +L  ++  A 
Sbjct: 182 LRRLEERMTEAAEDMEYERAARLRDDIGALTRAMEKSAVVLADATDADLIALAQDELEAA 241

Query: 256 IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK---PCPENILLSEEAEET 312
           +Q      G+ RG   +        T A ++ + L+Q Y ++     P+ +L+    +  
Sbjct: 242 VQIFHVRGGRVRGQRGWVTDKVEAVTTADLVEHALQQLYGEERGDAVPKEVLVPALPDPV 301

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS----HQMILKD 368
             ++    ++ G +V + VP++G+KR ++E    NA +S     +   S        L++
Sbjct: 302 QPVQEWLSERRGAQVSLRVPQRGDKRALMETVERNAQQSLALHKTKRASDLTTRSRALEE 361

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
                 L  +P RIE YD SH+ G   V  MVV  +    K++YR+F +     + QDD 
Sbjct: 362 IAAALDLDGVPLRIECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIKG--FQGQDDV 419

Query: 429 AMMRMVLERRFSQLIKNE---------------ENLNFHPKKQEYSFPSWPDVVILDGGK 473
             M  V+ RRF + +                  E        +   F   P ++++DGG+
Sbjct: 420 RSMHEVITRRFRRYLAERERTGEWTEEELDGPVEPGGLDEDGRPKRFAYPPQLLVVDGGQ 479

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q++AA+  L +L +++ + +  +AK  +     E +   + + +VL      LY +QR+
Sbjct: 480 PQVAAARRALDELGIDD-VAVCGLAKRLE-----EVWVPGEEDPVVLPRSSEGLYLLQRV 533

Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT  R +R K     PLDE+ G+G  RK+ LL+ FG+VK +  ++ E +  +
Sbjct: 534 RDEAHRFAITYQRSKRAKRFRAGPLDEVPGLGQTRKQALLKHFGSVKKLRAATIEQICEV 593

Query: 593 EGISKKIACKIYNHFHKNTSHTP 615
            GI ++ A  I   F ++    P
Sbjct: 594 PGIGRRTAETILATFARSEPGAP 616


>gi|256965207|ref|ZP_05569378.1| excinuclease ABC [Enterococcus faecalis HIP11704]
 gi|307273310|ref|ZP_07554556.1| excinuclease ABC subunit C [Enterococcus faecalis TX0855]
 gi|307277457|ref|ZP_07558549.1| excinuclease ABC subunit C [Enterococcus faecalis TX2134]
 gi|256955703|gb|EEU72335.1| excinuclease ABC [Enterococcus faecalis HIP11704]
 gi|306505722|gb|EFM74900.1| excinuclease ABC subunit C [Enterococcus faecalis TX2134]
 gi|306510295|gb|EFM79319.1| excinuclease ABC subunit C [Enterococcus faecalis TX0855]
          Length = 598

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++S+I++  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+I +  P++NI+L+DDK++P+I IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V+A  +T   L R F LR C       +  PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           E K FLSGG+  +++++   M  A    ++E A   RD++ A+  +       +      
Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             +++ A +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ ++ ++ S+  +   K       +  P++GEK+K+++ A  NA    +      +  
Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    KN+YRK+ + 
Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+S+++K                  +PD++++DGGKGQ+  
Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  +AK  K     E  F    E + L       + +QR++DE H
Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPDLEVVPLERNSQEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L    G+ +
Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578

Query: 598 KIACKIYNHFHKNTSH 613
            +A  +Y H H+ T+ 
Sbjct: 579 TVAKNVYRHLHQETTS 594


>gi|158334297|ref|YP_001515469.1| excinuclease ABC subunit C [Acaryochloris marina MBIC11017]
 gi|189038013|sp|B0C2T9|UVRC_ACAM1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|158304538|gb|ABW26155.1| excinuclease ABC, C subunit [Acaryochloris marina MBIC11017]
          Length = 626

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 207/620 (33%), Positives = 310/620 (50%), Gaps = 28/620 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61
            +++P  PGVY M D    +LY+GK+  L+ R++SY     +H  RI  M+ Q+ +I F 
Sbjct: 21  LKEIPPEPGVYFMRDANDDILYIGKSKKLRNRVRSYFRQIQDHPPRIELMVHQVADIEFI 80

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119
           VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ +T     P ++  R       Q 
Sbjct: 81  VTDTEAEALALEANLIKQHQPHFNVLLKDDKKYPYLCVTWSQTYPRIFITRKRRLGKAQD 140

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+  V  + +T+  ++R F LR     +F  + RPCL ++I RC G C   I+ E 
Sbjct: 141 KYYGPYVDVWQLRQTLRLVKRLFPLRQRRKPLF--KDRPCLNYEIGRCPGVCQALITPEA 198

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +      G    L   ++  M QA    ++E A   RD++  L  +        
Sbjct: 199 YRQILQKVVMIFQGRTSELINTLSLQMEQAAEDLNFEQAARLRDQIKGLQGLGVDQKVAL 258

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  +  +AC+Q      G+  G   F     S  +   IL + L   Y 
Sbjct: 259 PDDTVSRDAIALAADDQIACVQLFQIRSGRLVGRLGFMADAQSG-SLGMILQHVLEAHYG 317

Query: 296 DKPC---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  IL+  E  ET LL     ++   KV IT P++  K ++IE    NA    
Sbjct: 318 SAEPVELPLEILVQTELPETELLASYLSQRKERKVSITCPQRQIKAELIEMVERNAQYEL 377

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +   +       L+D  +   LP +P RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 378 ARTQKSRDRTLNALQDLAELLDLPELPHRIECYDISHIQGSDAVASQVVFIDGLPAKQHY 437

Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           R++ +   +VK     D A +  VL RRF Q        +  P++       WPD+V++D
Sbjct: 438 RRYKIRNPNVKAGHSDDFASLAEVLHRRFRQY-------HLSPEQPRQGTSDWPDLVVID 490

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLSA    L K+ V   + IIS+AK  +     E F   + + L  +   P +  I
Sbjct: 491 GGKGQLSAVLESLTKIEVVEDLQIISLAKQRE-----EIFQPGESQPLPTDPEQPGVQLI 545

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           +RLRDEAHRFAI+ HRK+R ++   S LD+I G+G  R++ LL +F ++  I  +SPE L
Sbjct: 546 RRLRDEAHRFAISFHRKKRLERMRRSRLDDIPGLGHHRQKELLAAFRSIDYIREASPEQL 605

Query: 590 ASIEGISKKIACKIYNHFHK 609
            ++  I  ++A KIY++FH 
Sbjct: 606 KAVPTIGPQLAQKIYDYFHP 625


>gi|322391389|ref|ZP_08064859.1| excinuclease ABC subunit C [Streptococcus peroris ATCC 700780]
 gi|321145815|gb|EFX41206.1| excinuclease ABC subunit C [Streptococcus peroris ATCC 700780]
          Length = 621

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 171/620 (27%), Positives = 293/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 21  KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 79

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 80  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 138

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 139 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICQKDETYFK 194

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 195 YMAQEVSDFLKGQDDKIIDDLKEKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 254

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 255 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 314

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 315 VPNEILIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 367

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 368 LEKSVEKTQGAIENLGRLLKIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 426

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ ++                + PD++++DGG+G
Sbjct: 427 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 470

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 471 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 528

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + + ++ 
Sbjct: 529 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKYFKSLTKIKEASVDEIVAV- 587

Query: 594 GISKKIACKIYNHFHKNTSH 613
           GI + +A  +++H +     
Sbjct: 588 GIPRAVAEAVHHHLNPEVDS 607


>gi|255325035|ref|ZP_05366141.1| excinuclease ABC subunit C [Corynebacterium tuberculostearicum
           SK141]
 gi|255297600|gb|EET76911.1| excinuclease ABC subunit C [Corynebacterium tuberculostearicum
           SK141]
          Length = 691

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 182/685 (26%), Positives = 314/685 (45%), Gaps = 82/685 (11%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D   RV+YVGKA NL+ R+ +Y         R   M+   N++ +TV 
Sbjct: 13  TIPTDPGVYKFRDENRRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTANSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IKR  P FN++ RDDK++P + ++    +P  + +R        YFG
Sbjct: 73  ASEVEALQLEYTWIKRFDPHFNVMYRDDKTYPMLAVSVGETVPRAFFYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV ++++ L R F +R+C+  V+       RPCLL  I +C  PC G +S E +
Sbjct: 133 PYSHAWAVRESLDLLTRVFPMRTCSKGVYNRHERLGRPCLLGYIGKCDAPCIGRVSKEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V++   F++G   +++ K+ ++M QA    ++E A   RD L A+  I      ++ 
Sbjct: 193 RETVNDLVSFMNGNTGSVRRKLTQDMEQAAENLEFERAARLRDDLGAIDKIMEQQAVVFT 252

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------------- 284
                D  +   ++  A +Q      G+ RG   + ++   +  +++             
Sbjct: 253 DGTDADLIAFNSDELEAAVQIFHVRDGRIRGQRGWVVERAGDQASSEPLEEGQPDPALPA 312

Query: 285 ILSYFLRQFYTD-----------------------------------KPCPENILLSEEA 309
           ++  FL QFY+D                                   +  P  IL+    
Sbjct: 313 LVQNFLIQFYSDAVEREKQEAREDAALAADVKRRGVDQESHMKSRRVQVIPRQILVQALP 372

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMI 365
           +E   +     +  G +V + VP++G+K++++     NA     Q          +    
Sbjct: 373 DEPEQVVALLEELRGAQVDLRVPQRGDKKQLMATVEKNAKEQLRQHKLKRVGDLTARSAA 432

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L+D  +   +   P RIE  D SHI G   V  +VV  +    K+ YR++ +       +
Sbjct: 433 LQDIQEALGMEQAPLRIECTDISHIQGTDVVASLVVFEDGLPKKSDYRRYRIKEAAGDGR 492

Query: 426 -DDCAMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVIL 469
            DD   +  +  RRF +  ++               EE +     +    F   P + I+
Sbjct: 493 SDDVGSIAEITRRRFKRHKQDKLAHPDEEVEESSFAEEKVAEESAEAGRRFAYPPQLFIV 552

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG  Q++AAQ V  +L + + +T++ +AK  +     E +     E ++L      L+ 
Sbjct: 553 DGGAPQVAAAQEVFDELGIVD-VTLVGLAKRLE-----EIWVPGDDEPVILPRNSQALFL 606

Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q++RDEAHRFAIT HR++R K   S  LD + G+GP R+  L++ FG+VK +  ++ E 
Sbjct: 607 LQQIRDEAHRFAITYHRQQRSKRMRSSVLDSVPGLGPQRRTDLVKHFGSVKKLKAATVEE 666

Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613
           +  + G   K+A  +Y   H +  +
Sbjct: 667 ICEVNGFGPKLAQTVYESLHDSAGN 691


>gi|295695298|ref|YP_003588536.1| excinuclease ABC, C subunit [Bacillus tusciae DSM 2912]
 gi|295410900|gb|ADG05392.1| excinuclease ABC, C subunit [Bacillus tusciae DSM 2912]
          Length = 591

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 185/611 (30%), Positives = 303/611 (49%), Gaps = 42/611 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY M D  GRV+YVGKA  L+ R++SY   + H  +   ++S+I +  + VT  
Sbjct: 15  LPGKPGVYLMKDSEGRVIYVGKAKTLKNRVRSYFTGS-HDAKTQKLVSEIRDFEYIVTDN 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEAL+LE N+IK+ +P FNI+LRDDKS+PYI IT + + P L   R  +    SYFGP+
Sbjct: 74  AVEALILECNLIKQHQPPFNIMLRDDKSYPYIKIT-REEHPRLEIVRRMAKDGASYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +     + + CL + I +C  PC   +  E+Y     
Sbjct: 133 PNSGSAMETKRLLDRLYPLRKCRNL----KKKVCLYYHIGQCLAPCEYPVDPERYEAIRK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FL+GG+  + E++ R M++      +E A   RD +  +  +      ++      
Sbjct: 189 DIGRFLNGGHGEIVEELERRMHEEAEALRFERAKELRDLIQHIGRVMEKQKIVFQDQVDR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  +  +   C+Q  F   G+                     SY  + ++ +   P+ 
Sbjct: 249 DVFGFFAERGRMCVQVFFIRGGKLIERAVQIFPF-YNDPLEDFGSYVAQFYFEETERPKE 307

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           + L E  E   L E           ++ VP++G KR+++E A  NA  +  +KL+ E   
Sbjct: 308 VYLPEGVETDVLGE-------WLGARVVVPRRGPKRQLVEMACENARIALEEKLALEERD 360

Query: 363 QMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  +++     A+     RIE +DNS++ G   V  MVV  +    K +YRKF + 
Sbjct: 361 LERTVGAVRELGDVLAIAAPR-RIEAFDNSNLQGTDPVAAMVVFVDGQPAKKEYRKFKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR++++++ +                 PD++++DGG+GQ+ A
Sbjct: 420 T--VQGPDDYASMREVIRRRYTRVLREK--------------LPLPDLIVVDGGRGQIGA 463

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  VL+   ++  I +  +AK  +     + F       + ++      Y +QR+++E H
Sbjct: 464 ALEVLQD-ELDLEIPVCGLAKDDRHRT-DQLFLGDDPVPVPIDRHSQGFYLLQRIQEEVH 521

Query: 539 RFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K+  +S LD+I GIG  RKR LLQ FG+V+ I ++S E      GI  
Sbjct: 522 RFAITFHRQTRGKRVMHSVLDDIPGIGEKRKRKLLQHFGSVEAIRQASLEEFRQA-GIGD 580

Query: 598 KIACKIYNHFH 608
           ++A +I     
Sbjct: 581 RLAEQILEALK 591


>gi|89901026|ref|YP_523497.1| excinuclease ABC subunit C [Rhodoferax ferrireducens T118]
 gi|119367823|sp|Q21W87|UVRC_RHOFD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|89345763|gb|ABD69966.1| Excinuclease ABC subunit C [Rhodoferax ferrireducens T118]
          Length = 671

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 212/643 (32%), Positives = 324/643 (50%), Gaps = 46/643 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D  G VLYVGKA NL+KR+ SY   N+   RI HM+S+I  +  TV  +
Sbjct: 35  LPPLPGVYRYFDFDGAVLYVGKAINLKKRVSSYFQKNHGGTRIGHMVSKIVRLETTVVRS 94

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-------KHKIPALYKHRDSSTIQ 118
           E EALLLE N+IK L P++NIL RDDKS+PY+ +T            P +  +R +   +
Sbjct: 95  EAEALLLENNLIKTLNPKYNILFRDDKSYPYLKMTGASSSSNPGTSFPRVSYYRGAVEKK 154

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             YFGP+ S  AV++ I  +Q+ F LR+C D VF +RTRPCLL+QIKRCS PC G IS+ 
Sbjct: 155 HQYFGPYPSAWAVKEAILLMQKVFHLRTCEDPVFNNRTRPCLLYQIKRCSAPCVGHISAA 214

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V  A++FL G    + E +   M     K ++E A   R+++AALS++ +     
Sbjct: 215 DYAQDVANAERFLRGDARQVMEALEARMMAHAEKLEFEQAAELRNQVAALSNVLHQQSVD 274

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST-------------- 281
                 +D  ++      AC+       G++ G   +F     ++T              
Sbjct: 275 NVADRDVDILAVKVQGGRACVNLAMVRGGRHLGDRPYFPAHVEDATEIYNAGGFEEAVED 334

Query: 282 ----------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331
                       Q+L  F+ Q Y + P P  +++S    +  L  ++   Q G KV    
Sbjct: 335 STTAPPVPSVETQVLEAFVAQHYLNVPVPPTLIVSAPVNKQLLEALAI--QSGVKVTAVH 392

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK---DFTKKFALPHIPKRIEIYDNS 388
             + ++R  +E A  NA     + LS E S Q   +   +            R+E +D S
Sbjct: 393 QPREQRRVWLEMAQTNAGLQLARLLSEEGSQQARTRALAEALDLALDDLDALRVECFDIS 452

Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN 448
           H  G +     VV   +     +YR++N++   +   DD A MR VL RR+ +L      
Sbjct: 453 HTAGEATQASCVVFAHHKMQNAEYRRYNIND--ITPGDDYAAMRQVLLRRYGKL-AETLR 509

Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508
                 +        PD+V++DGG+GQ+S A+ V ++L ++  + I+ + KG  R  G+E
Sbjct: 510 EAQQTGQMPAGTGRLPDLVLVDGGRGQVSMAREVFEQLGLDLSL-IVGVEKGEGRKVGLE 568

Query: 509 KFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS--PLDEINGIGP 565
           +     G   + L      L  + ++RDEAHRFAIT  R +R K       L+EI GIGP
Sbjct: 569 ELVFADGREKVYLGKDSAALMLVAQIRDEAHRFAITGMRAKRAKVRVDGGKLEEIPGIGP 628

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            R+  LLQ FG V+ ++ +  E +A++ GIS+++A +IY   H
Sbjct: 629 KRRSKLLQRFGGVRGVALAGAEDIATVAGISRELAEEIYRALH 671


>gi|307288099|ref|ZP_07568109.1| excinuclease ABC subunit C [Enterococcus faecalis TX0109]
 gi|306500835|gb|EFM70153.1| excinuclease ABC subunit C [Enterococcus faecalis TX0109]
 gi|315164286|gb|EFU08303.1| excinuclease ABC subunit C [Enterococcus faecalis TX1302]
 gi|315166621|gb|EFU10638.1| excinuclease ABC subunit C [Enterococcus faecalis TX1341]
          Length = 598

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 185/616 (30%), Positives = 311/616 (50%), Gaps = 41/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++S+I++  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+I +  P++NI+L+DDK++P+I IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V+A  +T   L R F LR C       +  PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           E K FLSGG+  +++++   M  A    ++E A   RD++ A+  +       +      
Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             +++ A +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ ++ ++ S+  +   K       I  P++GEK+K+++ A  NA    +      +  
Sbjct: 306 VLIPDDIDKESVEALLATK-------ILQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    KN+YRK+ + 
Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+S+++K                  +PD++++DGGKGQ+  
Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  +AK  K     E  F    E + L       + +QR++DE H
Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPDLEVVPLERNSQEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L    G+ +
Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578

Query: 598 KIACKIYNHFHKNTSH 613
            +A  +Y H H+ T+ 
Sbjct: 579 TVAKNVYRHLHQETTS 594


>gi|160898318|ref|YP_001563900.1| excinuclease ABC subunit C [Delftia acidovorans SPH-1]
 gi|160363902|gb|ABX35515.1| excinuclease ABC, C subunit [Delftia acidovorans SPH-1]
          Length = 650

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 206/642 (32%), Positives = 317/642 (49%), Gaps = 46/642 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D AG +LYVGKA NL++R+ SY   N+   RI HM+ +I  +  TV  +
Sbjct: 16  LPGLPGVYRYFDAAGTLLYVGKAINLKRRVSSYFTKNHGGTRIGHMVGKIARMETTVVRS 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD------------KHKIPALYKHRD 113
           E EALLLE N+IK   P++NIL RDDKS+PY+ IT               +   +  +R 
Sbjct: 76  EAEALLLENNLIKTQHPKYNILFRDDKSYPYLKITGVAARDGQAGEPAHQRFARMAYYRG 135

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
           +   +  YFGP+ +  AV+++I  LQ+ F LR+C D+VF +R+RPCLL+QIKRCSGPC  
Sbjct: 136 AVDKRHRYFGPYPNAWAVKESIQLLQKVFRLRTCEDTVFANRSRPCLLYQIKRCSGPCVD 195

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS E Y   V  A+  L G    L  ++   M +   + +YE A   R+++ ALS + +
Sbjct: 196 LISPEAYALDVRNAEAMLRGETQELLRQLEARMMEHAGRMEYEQAAEVRNQMTALSRVLH 255

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--------- 281
                      +D  ++      AC+       G++ G   +F     ++          
Sbjct: 256 QQVIETADDRDVDILAVKVQGGRACVNLAMVRGGRHLGDRPYFPANLGDAASVYAGEEEA 315

Query: 282 ---------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
                       +L  F+ Q YT    P  +++S   ++  L      +Q G ++     
Sbjct: 316 NLAESARPVEDIVLEAFIAQHYTGVAVPPVLIVSHPVDKKLLA--LLSEQGGVRITAVQQ 373

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSH 389
            + ++R  +E A  NA     + L+ E S Q   +   +   L         IE +D SH
Sbjct: 374 PREQRRIWLEMAQKNADIQMARLLAEEGSQQARTRALVEALDLACENLDELTIECFDISH 433

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G +     VV   +    ++YR+FN+    +   DD A MR VL RR+S++ + +   
Sbjct: 434 TAGEATQASCVVFHHHKMQSSEYRRFNIEG--ITGGDDYAAMRQVLTRRYSRVAEAQREA 491

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                      P  PD+V++DGGKGQ+S A+ V ++L ++    I+ + KG  R  G+E+
Sbjct: 492 GGAELT--GKQPQLPDLVLVDGGKGQVSMAREVFEQLGLDVS-RIVGVEKGEGRKVGLEE 548

Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPL 566
                G   + L      L  + ++RDEAHRFAIT  R  R K       L+EI G+GP 
Sbjct: 549 LVFADGREKIYLGYDSAALMLVAQIRDEAHRFAITGMRAARAKVRVGGGKLEEIPGVGPK 608

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++  LLQ FG V+ +S ++ E L S++GIS  +A  IY   H
Sbjct: 609 KRARLLQRFGGVRGVSEATVEDLCSVDGISAALAEDIYRALH 650


>gi|300784684|ref|YP_003764975.1| excinuclease ABC subunit C [Amycolatopsis mediterranei U32]
 gi|299794198|gb|ADJ44573.1| excinuclease ABC subunit C [Amycolatopsis mediterranei U32]
          Length = 632

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 186/630 (29%), Positives = 304/630 (48%), Gaps = 38/630 (6%)

Query: 13  YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y+  D   RV+YVGKA +L+ R+ SY    +    R   M++   ++ +TV  TEVEAL 
Sbjct: 2   YKFRDATKRVIYVGKAKSLRSRLNSYFADLSGLHPRTRQMVTTAASVEWTVVATEVEALQ 61

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131
           LE N IK   PRFN+  RDDKS+P + +T   + P L+ +R +      YFGP+A   A+
Sbjct: 62  LEYNWIKEFDPRFNVRYRDDKSYPVLAVTLNEEFPRLHVYRGARKKGVRYFGPYAHAWAI 121

Query: 132 EKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +T++ L R F  R+C+  VFR      RPCLL  I +CS PC G +S++++ + V +  
Sbjct: 122 RETLDLLLRVFPARTCSAGVFRRHGQIGRPCLLGYIDKCSAPCVGRVSADEHRDIVEDFC 181

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245
            FL+G    + +++   M  A+ + ++E A   RD L AL         +       D  
Sbjct: 182 DFLAGKTDVMIKRLETEMAAASEELEFERAARLRDDLGALRRAMEKQAVVLGDGTDADVV 241

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP------- 298
           +  H+   A +Q      G+ RG   + +    E     ++ +FL QFY D+        
Sbjct: 242 AFAHDDLEAAVQVFHVRGGRVRGQRGWVIDKAEEMDVPALVDHFLTQFYGDEAELDARDD 301

Query: 299 ------CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+ E   +   +        G +V++ VP++G+K+ + E    NA  + 
Sbjct: 302 VDAGPVVPREVLVPELPADAEAVAEWLTGLRGSRVQLRVPQRGDKKALAETVQRNAGEAF 361

Query: 353 TQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           TQ          +    L +  +  AL   P RIE  D SHI G   V  +VV  +    
Sbjct: 362 TQHKLRRAGDLTARSAALTELQEFLALDTAPLRIECIDISHIQGSDVVASLVVFEDGLAR 421

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK-----KQEYSFPSW 463
           K++YR+F L     +   D A +  V+ RRF + +K     +  P       +   F   
Sbjct: 422 KSEYRRFALREAATEG--DVASIAEVVRRRFYRYLKETAEESSTPGLDPETGRPKKFAYP 479

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           P+++++DG   Q +AA  VL +L + + I++I +AK  +     E +     + ++L   
Sbjct: 480 PNLLVVDGAGPQATAAADVLAELGITD-ISVIGLAKRLE-----EVWLPADPDPVILPRT 533

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
              LY +QRLRDEAHRFAI  HR++R K    S LD + G+G  R+  L++ FG+VK + 
Sbjct: 534 SEGLYLLQRLRDEAHRFAIAYHREKRSKRLVTSELDSVPGLGQARRTALIKHFGSVKKLK 593

Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTS 612
           ++  E + ++ G  ++ A  +       + 
Sbjct: 594 QARIEEIEAVPGFGRRTAEAVVAALAGESG 623


>gi|255975936|ref|ZP_05426522.1| excinuclease ABC subunit C [Enterococcus faecalis T2]
 gi|307278478|ref|ZP_07559552.1| excinuclease ABC subunit C [Enterococcus faecalis TX0860]
 gi|255968808|gb|EET99430.1| excinuclease ABC subunit C [Enterococcus faecalis T2]
 gi|306504821|gb|EFM74017.1| excinuclease ABC subunit C [Enterococcus faecalis TX0860]
          Length = 598

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 184/616 (29%), Positives = 310/616 (50%), Gaps = 41/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++S+I++  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+I +  P++NI+L+DDK++P+I IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V+A  +T   L R F LR C       +  PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           E K FLSGG+  +++++   M  A    ++E A   RD++ A+  +       +      
Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             +++ A +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ ++ ++ S+  +   K       I  P++GEK+K+++ A  NA    +      +  
Sbjct: 306 VLIPDDIDKESVEALLATK-------ILQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    KN+YRK+ + 
Sbjct: 359 QERTIGAVEKLGNAMNIPVP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+S+++K                  +PD++++DGGKGQ+  
Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            + VL    +   I +  +AK  K     E  F    E + L       + +QR++DE H
Sbjct: 462 VKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L    G+ +
Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578

Query: 598 KIACKIYNHFHKNTSH 613
            +A  +Y H H+ T+ 
Sbjct: 579 TVAKNVYRHLHQETTS 594


>gi|29375973|ref|NP_815127.1| excinuclease ABC subunit C [Enterococcus faecalis V583]
 gi|227518671|ref|ZP_03948720.1| excinuclease ABC subunit C [Enterococcus faecalis TX0104]
 gi|227553202|ref|ZP_03983251.1| excinuclease ABC subunit C [Enterococcus faecalis HH22]
 gi|229545909|ref|ZP_04434634.1| excinuclease ABC subunit C [Enterococcus faecalis TX1322]
 gi|229550103|ref|ZP_04438828.1| excinuclease ABC subunit C [Enterococcus faecalis ATCC 29200]
 gi|255972881|ref|ZP_05423467.1| excinuclease ABC subunit C [Enterococcus faecalis T1]
 gi|256618986|ref|ZP_05475832.1| excinuclease ABC [Enterococcus faecalis ATCC 4200]
 gi|256853041|ref|ZP_05558411.1| excinuclease ABC subunit C [Enterococcus faecalis T8]
 gi|256958897|ref|ZP_05563068.1| excinuclease ABC [Enterococcus faecalis DS5]
 gi|257078928|ref|ZP_05573289.1| excinuclease ABC [Enterococcus faecalis JH1]
 gi|257086830|ref|ZP_05581191.1| excinuclease ABC [Enterococcus faecalis D6]
 gi|257089799|ref|ZP_05584160.1| excinuclease ABC subunit C [Enterococcus faecalis CH188]
 gi|257419216|ref|ZP_05596210.1| excinuclease ABC subunit C [Enterococcus faecalis T11]
 gi|257422705|ref|ZP_05599695.1| excinuclease ABC subunit C [Enterococcus faecalis X98]
 gi|294780086|ref|ZP_06745462.1| excinuclease ABC, C subunit [Enterococcus faecalis PC1.1]
 gi|300860703|ref|ZP_07106790.1| excinuclease ABC, C subunit [Enterococcus faecalis TUSoD Ef11]
 gi|307271104|ref|ZP_07552387.1| excinuclease ABC subunit C [Enterococcus faecalis TX4248]
 gi|307291394|ref|ZP_07571278.1| excinuclease ABC subunit C [Enterococcus faecalis TX0411]
 gi|312900673|ref|ZP_07759970.1| excinuclease ABC subunit C [Enterococcus faecalis TX0470]
 gi|312904149|ref|ZP_07763317.1| excinuclease ABC subunit C [Enterococcus faecalis TX0635]
 gi|312952410|ref|ZP_07771285.1| excinuclease ABC subunit C [Enterococcus faecalis TX0102]
 gi|81585291|sp|Q835H1|UVRC_ENTFA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|29343435|gb|AAO81197.1| excinuclease ABC, subunit C [Enterococcus faecalis V583]
 gi|227073851|gb|EEI11814.1| excinuclease ABC subunit C [Enterococcus faecalis TX0104]
 gi|227177675|gb|EEI58647.1| excinuclease ABC subunit C [Enterococcus faecalis HH22]
 gi|229304807|gb|EEN70803.1| excinuclease ABC subunit C [Enterococcus faecalis ATCC 29200]
 gi|229308977|gb|EEN74964.1| excinuclease ABC subunit C [Enterococcus faecalis TX1322]
 gi|255963899|gb|EET96375.1| excinuclease ABC subunit C [Enterococcus faecalis T1]
 gi|256598513|gb|EEU17689.1| excinuclease ABC [Enterococcus faecalis ATCC 4200]
 gi|256711500|gb|EEU26538.1| excinuclease ABC subunit C [Enterococcus faecalis T8]
 gi|256949393|gb|EEU66025.1| excinuclease ABC [Enterococcus faecalis DS5]
 gi|256986958|gb|EEU74260.1| excinuclease ABC [Enterococcus faecalis JH1]
 gi|256994860|gb|EEU82162.1| excinuclease ABC [Enterococcus faecalis D6]
 gi|256998611|gb|EEU85131.1| excinuclease ABC subunit C [Enterococcus faecalis CH188]
 gi|257161044|gb|EEU91004.1| excinuclease ABC subunit C [Enterococcus faecalis T11]
 gi|257164529|gb|EEU94489.1| excinuclease ABC subunit C [Enterococcus faecalis X98]
 gi|294452838|gb|EFG21264.1| excinuclease ABC, C subunit [Enterococcus faecalis PC1.1]
 gi|295112924|emb|CBL31561.1| Excinuclease ABC subunit C [Enterococcus sp. 7L76]
 gi|300849742|gb|EFK77492.1| excinuclease ABC, C subunit [Enterococcus faecalis TUSoD Ef11]
 gi|306497625|gb|EFM67158.1| excinuclease ABC subunit C [Enterococcus faecalis TX0411]
 gi|306512602|gb|EFM81251.1| excinuclease ABC subunit C [Enterococcus faecalis TX4248]
 gi|310629794|gb|EFQ13077.1| excinuclease ABC subunit C [Enterococcus faecalis TX0102]
 gi|310632625|gb|EFQ15908.1| excinuclease ABC subunit C [Enterococcus faecalis TX0635]
 gi|311292154|gb|EFQ70710.1| excinuclease ABC subunit C [Enterococcus faecalis TX0470]
 gi|315027353|gb|EFT39285.1| excinuclease ABC subunit C [Enterococcus faecalis TX2137]
 gi|315029972|gb|EFT41904.1| excinuclease ABC subunit C [Enterococcus faecalis TX4000]
 gi|315033808|gb|EFT45740.1| excinuclease ABC subunit C [Enterococcus faecalis TX0017]
 gi|315036893|gb|EFT48825.1| excinuclease ABC subunit C [Enterococcus faecalis TX0027]
 gi|315145719|gb|EFT89735.1| excinuclease ABC subunit C [Enterococcus faecalis TX2141]
 gi|315150621|gb|EFT94637.1| excinuclease ABC subunit C [Enterococcus faecalis TX0012]
 gi|315152571|gb|EFT96587.1| excinuclease ABC subunit C [Enterococcus faecalis TX0031]
 gi|315155850|gb|EFT99866.1| excinuclease ABC subunit C [Enterococcus faecalis TX0043]
 gi|315157983|gb|EFU02000.1| excinuclease ABC subunit C [Enterococcus faecalis TX0312]
 gi|315160194|gb|EFU04211.1| excinuclease ABC subunit C [Enterococcus faecalis TX0645]
 gi|315575539|gb|EFU87730.1| excinuclease ABC subunit C [Enterococcus faecalis TX0309B]
 gi|315577530|gb|EFU89721.1| excinuclease ABC subunit C [Enterococcus faecalis TX0630]
 gi|315580020|gb|EFU92211.1| excinuclease ABC subunit C [Enterococcus faecalis TX0309A]
 gi|323480640|gb|ADX80079.1| excinuclease ABC, C subunit [Enterococcus faecalis 62]
 gi|329571401|gb|EGG53088.1| excinuclease ABC, C subunit [Enterococcus faecalis TX1467]
          Length = 598

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++S+I++  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+I +  P++NI+L+DDK++P+I IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V+A  +T   L R F LR C       +  PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           E K FLSGG+  +++++   M  A    ++E A   RD++ A+  +       +      
Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             +++ A +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ ++ ++ S+  +   K       +  P++GEK+K+++ A  NA    +      +  
Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    KN+YRK+ + 
Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+S+++K                  +PD++++DGGKGQ+  
Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  +AK  K     E  F    E + L       + +QR++DE H
Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L    G+ +
Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578

Query: 598 KIACKIYNHFHKNTSH 613
            +A  +Y H H+ T+ 
Sbjct: 579 TVAKNVYRHLHQETTS 594


>gi|217964700|ref|YP_002350378.1| excinuclease ABC, C subunit [Listeria monocytogenes HCC23]
 gi|254764937|sp|B8DHZ8|UVRC_LISMH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|217333970|gb|ACK39764.1| excinuclease ABC, C subunit [Listeria monocytogenes HCC23]
 gi|307570739|emb|CAR83918.1| excinuclease ABC, C subunit [Listeria monocytogenes L99]
          Length = 603

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 180/622 (28%), Positives = 297/622 (47%), Gaps = 45/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M +A    ++E A   RD++ A+           N     
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           I L ++ +  ++  +          KI VP++G K+ +++ A  NA              
Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKISLNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K                   PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +    G+ 
Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579

Query: 597 KKIACKIYNH---FHKNTSHTP 615
             +A +++ H   F++   +T 
Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601


>gi|124267149|ref|YP_001021153.1| excinuclease ABC subunit C [Methylibium petroleiphilum PM1]
 gi|124259924|gb|ABM94918.1| Excinuclease ABC subunit C [Methylibium petroleiphilum PM1]
          Length = 673

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 210/653 (32%), Positives = 315/653 (48%), Gaps = 65/653 (9%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D  G +LYVGKA NL+KR+ SY   N+   R  HM+ +I  +  TV  +
Sbjct: 36  LPSLPGVYRYFDAQGTLLYVGKAGNLKKRVSSYFQKNHGGTRTGHMVGRIARLETTVVRS 95

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKH---------------KIPALYK 110
           E EALLLE N+IK L P+FNIL RDDKS+PY+ IT                    P +  
Sbjct: 96  EAEALLLENNLIKTLNPKFNILFRDDKSYPYLKITGAAVAGGPSPAAGTAAAVDYPRMAY 155

Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGP 170
           +R     +  YFGP+ S  AV+++I  LQ+ F LR+C D+VF HRTRPCLL+QIKRCSGP
Sbjct: 156 YRGGVDKRHRYFGPYPSAWAVKESIQLLQKVFRLRTCEDTVFNHRTRPCLLYQIKRCSGP 215

Query: 171 CTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
           C   I +  Y   V  A++FL G    +   +   M       ++E A   R++L ALS 
Sbjct: 216 CVQAIGAADYARDVRNAERFLLGEQQEVMGTLQAQMMAYADALEFEKAAEIRNQLGALSR 275

Query: 231 IQNHNDSIYN-------RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA 283
           + +      N         D  +       AC+       G++ G   +F     E++  
Sbjct: 276 VLHQQSVETNADGAFDKDADILAAVVQGGRACVNLAMVRGGRHLGDRPYFPTHVEEASAL 335

Query: 284 QIL----------------------SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFK 321
           + +                        F+ Q Y D   P  ++ S   ++  +   +   
Sbjct: 336 EGMEDAAGPVAAVAPPQARVEVRVLEAFIAQHYLDGAPPPLLITSHAIDKALV--EALTD 393

Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP-- 379
             G +V      + ++R+ +E A  NA    TQ L  E S Q   +       L      
Sbjct: 394 ASGVRVTAQHQPRDQRRQWLEMAEKNARIKLTQLLGEEGSQQARTRALVDALDLAPDQLE 453

Query: 380 -KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438
             RIE +D SH  G +     VV  E+     QYR++N+    +   DD A MR VL RR
Sbjct: 454 RFRIECFDISHTAGEATQASCVVFEEHKMQPAQYRRYNI--TGITPGDDYAAMRQVLTRR 511

Query: 439 FSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIA 498
           +++L +                   PD+V++DGGKGQ++ A+ V ++L ++  + I+ + 
Sbjct: 512 YAKLAE----------ASAQGTARLPDLVLVDGGKGQVAMARDVFEELGLDLSL-IVGVE 560

Query: 499 KGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--S 555
           KG  R  G+E+     G   + L      L  + ++RDEAHRFAIT  R RR       S
Sbjct: 561 KGEGRKVGLEELVFADGRAKVYLGKDSAALMLVAQIRDEAHRFAITGMRARRASVRTGGS 620

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L++I GIGP ++  LLQ FG  + ++ +S + L+S++GIS+++A +IY   H
Sbjct: 621 RLEDIAGIGPKKRAKLLQRFGGARGVASASVDDLSSVDGISRELAEEIYRVLH 673


>gi|304316131|ref|YP_003851276.1| excinuclease ABC subunit C [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777633|gb|ADL68192.1| excinuclease ABC, C subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 617

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 201/619 (32%), Positives = 329/619 (53%), Gaps = 18/619 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +PE PGVY M D +G+++YVGKA  L+ R++ Y     N   ++  M+  I +  +
Sbjct: 7   KLKLLPEKPGVYIMKDSSGKIIYVGKAVILKNRVRQYFQNPANQIPKVRTMVRHIADFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ KP++NILL+DDK++PYI IT     P +   R        
Sbjct: 67  IVTDTELEALILECNLIKKHKPKYNILLKDDKNYPYIKITVNEDYPRILFTRRLEMDGAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP++S  AV +TI  L+  F LRSC  ++ +   + R CL + I  CS PC G+IS +
Sbjct: 127 YFGPYSSAFAVRETIKLLRHMFPLRSCNRNIEKDIGKCRECLYYHIGLCSAPCIGQISKD 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            YM+ V +A  FL G +  L +K+   M +A+   ++E A   RD++  +         I
Sbjct: 187 DYMKLVDDALMFLEGKHDVLLKKLKEEMEKASQNMEFEKAAKLRDQIYGIEKTSEKQKII 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  S+  + + ACIQ  F   G+  G   +F+K   E   + I+S F++QFY 
Sbjct: 247 STSGEDQDVISMARSADDACIQVFFIRGGKVSGREHYFMKNTDEMNRSDIMSSFIKQFYD 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             P  P+ I+   + +E  +L      + G KV I++P +G+K+++++    NA  S   
Sbjct: 307 GAPYIPKEIITDVDMDEKHVLAEWLSNKRGNKVVISIPSKGKKKELVDMVYENALESLKS 366

Query: 355 KLSTEISHQM--ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            ++ ++  Q    + + +K   L +   RIE +D S+I G   V  MVV  +    K+ Y
Sbjct: 367 DINLKMKRQKSDAVSELSKLLGLEYAE-RIEAFDISNIRGTDNVASMVVFVDGKPHKSSY 425

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471
           RKFN+    V+ QDD   MR V+ RR    I+  + ++    +++   F   PD++++DG
Sbjct: 426 RKFNIKT--VEGQDDYGSMREVILRRIKHGIEERKLIDDGELQEDKAKFHIMPDLILVDG 483

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G G ++ A+ VL++LNV+  I +  + K  K         V     + + M       + 
Sbjct: 484 GLGHVNTAKEVLRELNVD--IPVYGMVKDSKHRTRG---LVSTDGEIDMPMTGRAFRLVA 538

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            ++DEAHRFAIT H++ + K   S L  I GIG  R + L ++F T+  I  ++ E L  
Sbjct: 539 EIQDEAHRFAITFHKETKSKKLRSDLLNIPGIGEKRMKALFEAFKTIDDIKNATVEELKK 598

Query: 592 IEGISKKIACKIYNHFHKN 610
           +EG+++K A  +Y++F  +
Sbjct: 599 VEGMNEKAANAVYDYFRSD 617


>gi|254898605|ref|ZP_05258529.1| excinuclease ABC subunit C [Listeria monocytogenes J0161]
 gi|254911906|ref|ZP_05261918.1| excinuclease ABC transporter,ATP-binding protein [Listeria
           monocytogenes J2818]
 gi|254936231|ref|ZP_05267928.1| excinuclease ABC subunit C [Listeria monocytogenes F6900]
 gi|284801554|ref|YP_003413419.1| excinuclease ABC subunit C [Listeria monocytogenes 08-5578]
 gi|284994696|ref|YP_003416464.1| excinuclease ABC subunit C [Listeria monocytogenes 08-5923]
 gi|258608821|gb|EEW21429.1| excinuclease ABC subunit C [Listeria monocytogenes F6900]
 gi|284057116|gb|ADB68057.1| excinuclease ABC subunit C [Listeria monocytogenes 08-5578]
 gi|284060163|gb|ADB71102.1| excinuclease ABC subunit C [Listeria monocytogenes 08-5923]
 gi|293589864|gb|EFF98198.1| excinuclease ABC transporter,ATP-binding protein [Listeria
           monocytogenes J2818]
          Length = 603

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/622 (29%), Positives = 300/622 (48%), Gaps = 45/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M +A    ++E A   RD++ A+           N     
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L ++ +  ++  +          KI VP++G K+ +++ A  NA  +  +K       
Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K                   PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +    G+ 
Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASIEEIKEA-GVP 579

Query: 597 KKIACKIYNH---FHKNTSHTP 615
             +A +++ H   F++   +T 
Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601


>gi|254830012|ref|ZP_05234667.1| excinuclease ABC subunit C [Listeria monocytogenes 10403S]
          Length = 603

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 183/622 (29%), Positives = 301/622 (48%), Gaps = 45/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M +A    ++E A   RD++ A+           N     
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +         T+   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKTNHIPPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L ++ +  ++  I          KI VP++G K+ +++ A  NA  +  +K       
Sbjct: 307 IYLPDDVDSEAVQAIVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K                   PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +    G+ 
Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASIEEIKEA-GVP 579

Query: 597 KKIACKIYNH---FHKNTSHTP 615
             +A +++ H   F++   +T 
Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601


>gi|311739495|ref|ZP_07713330.1| excision endonuclease subunit UvrC [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305311|gb|EFQ81379.1| excision endonuclease subunit UvrC [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 691

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/685 (26%), Positives = 313/685 (45%), Gaps = 82/685 (11%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D   RV+YVGKA NL+ R+ +Y         R   M+   N++ +TV 
Sbjct: 13  TIPTDPGVYKFRDENRRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTANSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IKR  P FN++ RDDK++P + ++    +P  + +R        YFG
Sbjct: 73  ASEVEALQLEYTWIKRFDPHFNVMYRDDKTYPMLAVSVGETVPRAFFYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV ++++ L R F +R+C+  V+       RPCLL  I +C  PC G +S E +
Sbjct: 133 PYSHAWAVRESLDLLTRVFPMRTCSKGVYNRHERLGRPCLLGYIGKCDAPCIGRVSKEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V++   F++G   +++ K+ ++M QA    ++E A   RD L A+  I      ++ 
Sbjct: 193 RETVNDLVSFMNGNTGSVRRKLTQDMEQAAENLEFERAARLRDDLGAIDKIMEQQAVVFT 252

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------------- 284
                D  +   ++  A +Q      G+ RG   + ++   +  +++             
Sbjct: 253 DGTDADLIAFSSDELEAAVQIFHVRDGRIRGQRGWVVERAGDQASSEPLEEGKPDPALPA 312

Query: 285 ILSYFLRQFYTD-----------------------------------KPCPENILLSEEA 309
           ++  FL QFY+D                                   +  P  IL+    
Sbjct: 313 LVQNFLIQFYSDAVEREKQEAREDAALAADVKRRGVDQESHMKSRRVQVIPRQILVQALP 372

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMI 365
           +E   +     +  G +V + VP++G+K++++     NA     Q          +    
Sbjct: 373 DEPEQVVALLEELRGAQVDLRVPQRGDKKQLMATVEKNAKEQLRQHKLKRVGDLTARSAA 432

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L+D  +   +   P RIE  D SHI G   V  +VV  +    K+ YR++ +       +
Sbjct: 433 LQDIQEALGMEQAPLRIECTDISHIQGTDVVASLVVFEDGLPKKSDYRRYRIKEAAGDGR 492

Query: 426 -DDCAMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVIL 469
            DD   +  +  RRF +  ++               EE +     +    F   P + I+
Sbjct: 493 SDDVGSIAEITRRRFKRHKQDKLAHPDEEVEESSFAEEKVAEESAEAGRRFAYPPQLFIV 552

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG  Q++AAQ V  +L + + +T++ +AK  +     E +     E ++L      L+ 
Sbjct: 553 DGGAPQVAAAQEVFDELGIVD-VTLVGLAKRLE-----EIWVPGDDEPVILPRNSQALFL 606

Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q++RDEAHRFAIT HR++R K   S  LD + G+GP R+  L++ FG+VK +  ++ + 
Sbjct: 607 LQQIRDEAHRFAITYHRQQRSKRMRSSVLDSVPGLGPQRRTDLVKHFGSVKKLKAATVDE 666

Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613
           +  + G   K+A  +Y   H +   
Sbjct: 667 ICEVNGFGPKLAQTVYESLHDSAGS 691


>gi|327535047|gb|AEA93881.1| excision endonuclease subunit UvrC [Enterococcus faecalis OG1RF]
          Length = 598

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++S+I++  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+I +  P++NI+L+DDK++P+I IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V+A  +T   L R F LR C       +  PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           E K FLSGG+  +++++   M  A    ++E A   RD++ A+  +       +      
Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             +++ A +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ ++ ++ S+  +   K       +  P++GEK+K+++ A  NA    +      +  
Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    KN+YRK+ + 
Sbjct: 359 QERIIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+S+++K                  +PD++++DGGKGQ+  
Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  +AK  K     E  F    E + L       + +QR++DE H
Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L    G+ +
Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578

Query: 598 KIACKIYNHFHKNTSH 613
            +A  +Y H H+ T+ 
Sbjct: 579 TVAKNVYRHLHQETTS 594


>gi|256962009|ref|ZP_05566180.1| excinuclease ABC [Enterococcus faecalis Merz96]
 gi|257082627|ref|ZP_05576988.1| excinuclease ABC [Enterococcus faecalis E1Sol]
 gi|257416016|ref|ZP_05593010.1| excinuclease ABC [Enterococcus faecalis AR01/DG]
 gi|293382378|ref|ZP_06628317.1| excinuclease ABC subunit C [Enterococcus faecalis R712]
 gi|293389360|ref|ZP_06633818.1| excinuclease ABC subunit C [Enterococcus faecalis S613]
 gi|312907380|ref|ZP_07766371.1| excinuclease ABC subunit C [Enterococcus faecalis DAPTO 512]
 gi|312909997|ref|ZP_07768844.1| excinuclease ABC subunit C [Enterococcus faecalis DAPTO 516]
 gi|256952505|gb|EEU69137.1| excinuclease ABC [Enterococcus faecalis Merz96]
 gi|256990657|gb|EEU77959.1| excinuclease ABC [Enterococcus faecalis E1Sol]
 gi|257157844|gb|EEU87804.1| excinuclease ABC [Enterococcus faecalis ARO1/DG]
 gi|291080323|gb|EFE17687.1| excinuclease ABC subunit C [Enterococcus faecalis R712]
 gi|291081247|gb|EFE18210.1| excinuclease ABC subunit C [Enterococcus faecalis S613]
 gi|310626408|gb|EFQ09691.1| excinuclease ABC subunit C [Enterococcus faecalis DAPTO 512]
 gi|311289270|gb|EFQ67826.1| excinuclease ABC subunit C [Enterococcus faecalis DAPTO 516]
 gi|315147903|gb|EFT91919.1| excinuclease ABC subunit C [Enterococcus faecalis TX4244]
          Length = 598

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 185/616 (30%), Positives = 311/616 (50%), Gaps = 41/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++S+I++  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+I +  P++NI+L+DDK++P+I IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V+A  +T   L R F LR C       +  PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           E K FLSGG+  +++++   M  A    ++E A   RD++ A+  +       +      
Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             +++ A +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ ++ ++ S+  +   K       I  P++GEK+K+++ A  NA    +      +  
Sbjct: 306 VLIPDDIDKESVEALLATK-------ILQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    KN+YRK+ + 
Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+S+++K                  +PD++++DGGKGQ+  
Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  +AK  K     E  F    E + L       + +QR++DE H
Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L    G+ +
Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578

Query: 598 KIACKIYNHFHKNTSH 613
            +A  +Y H H+ T+ 
Sbjct: 579 TVAKNVYRHLHQETTS 594


>gi|256762412|ref|ZP_05502992.1| excinuclease ABC [Enterococcus faecalis T3]
 gi|256683663|gb|EEU23358.1| excinuclease ABC [Enterococcus faecalis T3]
          Length = 598

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++S+I++  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+I +  P++NI+L+DDK++P+I IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V+A  +T   L R F LR C       +  PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           E K FLSGG+  +++++   M  A    ++E A   RD++ A+  +       +      
Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             +++ A +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ ++ ++ S+  +   K       +  P++GEK+K+++ A  NA    +      +  
Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    KN+YRK+ + 
Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+S+++K                  +PD++++DGGKGQ+  
Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  +AK  K     E  F    E + L       + +QR++DE H
Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L    G+ +
Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578

Query: 598 KIACKIYNHFHKNTSH 613
            +A  +Y H H+ T+ 
Sbjct: 579 TVAKNVYRHLHQETTS 594


>gi|73748905|ref|YP_308144.1| excinuclease ABC subunit C [Dehalococcoides sp. CBDB1]
 gi|90111067|sp|Q3ZYA3|UVRC_DEHSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|73660621|emb|CAI83228.1| excinuclease ABC, C subunit [Dehalococcoides sp. CBDB1]
          Length = 607

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 212/613 (34%), Positives = 329/613 (53%), Gaps = 27/613 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY M +  G ++YVGKA  L+ R+KSY    +  T +   ++SQIN + + +T
Sbjct: 12  SLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPSRLTPKTCQLVSQINELEYLIT 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EAL+LE N+IKR +P FN+ L+DDK FPY+ IT   K P +Y  R  +   G YFG
Sbjct: 72  GSEQEALILELNLIKRHRPYFNVRLKDDKGFPYLKITLNEKWPRIYITRSMADDGGRYFG 131

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFA+  +V  T+  L+  F  RSC  +     +RPCL + I +C  PCTG+IS   Y   
Sbjct: 132 PFANTRSVRHTLQVLKELFRFRSCNRTEPEKHSRPCLEYDIHQCLSPCTGKISKSDYDHL 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYN 240
           + +A  FL G    + + + R MN+A+ + DYE+A + RD++A++  +         +  
Sbjct: 192 ISQAILFLEGKQDQVLKLLIRLMNEASARLDYETAALRRDQIASIKEVIEGQQLAARVTG 251

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299
             D  +     +L+ +Q  F   G+  G  +F L+   E     ILS F +QFY      
Sbjct: 252 EQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFCLQGTREEKPGDILSEFAKQFYHSSTQI 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355
           P  I+      +  +LE    ++ G KV IT   +G+ +++I     NA     ++  + 
Sbjct: 312 PPKIVTQYPVSDREILEKWLSQRRGDKVHITAGLRGQPKELINIVAENAREQLKQARIKN 371

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS+ ++    L +      L   P+RIE YD S+I G +AVG MVV       K  YR+F
Sbjct: 372 LSSSVTLTDALAELQTALGLSLPPQRIEGYDISNIQGTNAVGSMVVFENGKPQKAHYRRF 431

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    VK  DD +M++ V+ RRF ++ + +            SF   P ++++DGGKGQ
Sbjct: 432 RIKT--VKGADDFSMLKEVISRRFGRVHRED---------AGESFARLPSLMLIDGGKGQ 480

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           LS+ +  L KL +E +  +I +AK  +     E +   K E + L    P L  +QR+RD
Sbjct: 481 LSSVKETLDKLGLEGQ-AVIGLAKEFE-----EIYLPHKSEPIRLAANSPALQLLQRVRD 534

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFA+  H   R+K+   S LD I G+GP R+RLL+++FG+V  I ++S E L+ ++G
Sbjct: 535 EAHRFALGYHLHIRQKSGLTSALDGIPGVGPSRRRLLIKTFGSVAGIRQASFEKLSQVKG 594

Query: 595 ISKKIACKIYNHF 607
           I++ +A  I    
Sbjct: 595 INQALALSIKELL 607


>gi|308276485|gb|ADO26384.1| UvrABC system protein C [Corynebacterium pseudotuberculosis I19]
          Length = 675

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 179/669 (26%), Positives = 311/669 (46%), Gaps = 69/669 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y    +    R   M++  +++ +TV 
Sbjct: 13  SIPTDPGVYKFRDSHGRVVYVGKAKNLRSRLSNYFQDLSVLHPRTRQMVTTASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IK+  PRFN+  RDDK++P + ++   + P  + +R        YFG
Sbjct: 73  SSEVEALQLEYTWIKKFDPRFNVKYRDDKTYPMLAVSVGERFPRAFFYRGPQRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV +T++ L R F +R+C+  VF       RPCLL  I +CS PC G ++ +++
Sbjct: 133 PYSHAWAVRETLDLLTRVFPVRTCSKGVFNRHESLGRPCLLGYIDKCSAPCIGRVTEQEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V+    F++G    +   +   M  A  + D+E A   RD + A+  I      +  
Sbjct: 193 RDIVNGFCSFMAGKTDAVVASLNSQMLTAAEELDFERAARLRDDIHAVQKITEQQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYT 295
                D  ++  +   A IQ      G+ +G   + ++   DSE    ++L  FL +FYT
Sbjct: 253 DGTDADVIAISADDLEASIQLFHVRAGRVKGQRGWIVERTGDSEEELQELLQAFLIRFYT 312

Query: 296 DKP-------------------------------------CPENILLSEEAEETSLLEIS 318
           D                                        P+ +L+     +    +++
Sbjct: 313 DAVELEEETNKEEENVIRRGVDQFSYVDEHLSSHQLRGSMIPKEVLVEIAPLDLEHTKVA 372

Query: 319 FFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFA 374
             +  G  V + VP +G+KR ++E    NA     +   +++    +    L++  +   
Sbjct: 373 LSELRGSLVDLRVPARGDKRALMETVHANAVETLRQHKLKRVGDLTARSAALQELQEALF 432

Query: 375 LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRM 433
           L   P RIE  D SHI G   V  +VV  +    K+ YR++ +         +D   +  
Sbjct: 433 LEEAPLRIECIDISHIQGTDVVASLVVFEDGLPKKSDYRRYKIKDAAGDGHSNDVVSIAE 492

Query: 434 VLERRFSQLIKNEENLNFHPK-----------KQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           V+ RRF +  K+   +    +           +    F   P + I+DGG  Q++AA  +
Sbjct: 493 VVRRRFIRHHKDRLTVPEAEEFDGSTFTDETVEHSKRFAYPPQLFIVDGGSPQVAAADAI 552

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
            ++L V N + ++ IAK  +     E +  +  E ++L      +Y +Q++RDEAHRFAI
Sbjct: 553 FEELGV-NDVALVGIAKRLE-----ELWIPQDDEPVILPRNSQAMYLVQQIRDEAHRFAI 606

Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
             HR++R K    S LD I G+G  R+  L++ FG+VK +  +S E + +++G   ++A 
Sbjct: 607 AFHRQQRSKRMRTSALDNIKGLGQTRRTELVKHFGSVKKLKAASVEEITAVKGFGPQLAQ 666

Query: 602 KIYNHFHKN 610
            +++     
Sbjct: 667 NVFDALRAE 675


>gi|290893284|ref|ZP_06556270.1| excinuclease ABC [Listeria monocytogenes FSL J2-071]
 gi|290557092|gb|EFD90620.1| excinuclease ABC [Listeria monocytogenes FSL J2-071]
          Length = 603

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/622 (29%), Positives = 300/622 (48%), Gaps = 45/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M +A    ++E A   RD++ A+           N     
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L ++ +  ++  +          KI VP++G K+ +++ A  NA  +  +K       
Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGESMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K                   PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +    G+ 
Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579

Query: 597 KKIACKIYNH---FHKNTSHTP 615
             +A +++ H   F++   +T 
Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601


>gi|332535897|ref|ZP_08411612.1| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034713|gb|EGI71260.1| excinuclease ABC subunit C [Pseudoalteromonas haloplanktis ANT/505]
          Length = 586

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 214/602 (35%), Positives = 324/602 (53%), Gaps = 27/602 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           MLD   +V+YVGKA +L+KR+ SY  SN    +   ++S I +I  T+T TE EALLLE 
Sbjct: 1   MLDSDNQVIYVGKAKHLKKRVSSYFRSNITDSKTRVLVSNICDIEVTLTNTETEALLLEN 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N+IK+ +PR+NILLRDDKS+PYIL+T  HK P L  HR S  I+G YFGPF S  AV ++
Sbjct: 61  NLIKKYQPRYNILLRDDKSYPYILLT-SHKHPRLAFHRGSRKIKGEYFGPFPSAGAVSES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           +  +Q+ F +R C D+ +R R+RPCL +Q+KRCS PC  +++ + Y E V   +KFL+G 
Sbjct: 120 LRLMQKIFPVRQCEDAYYRARSRPCLQYQLKRCSAPCVNKVTDDDYSEQVDYVRKFLTGK 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFSLYHNKN 252
           +H +   + + M  A+ + ++E A   RD++  L  +Q       N   MD     H   
Sbjct: 180 SHEVIADLIKKMEGASKQLNFELAAKVRDQIMLLRKMQEQQSISGNFAEMDVVGFAHLNG 239

Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSEE 308
           L  I        +  G+ T+F K   +S+  +IL+ FL Q+Y          + I+L  E
Sbjct: 240 LNGIHLLMIRDHKVLGSKTYFPKVPKDSSEQEILTSFLGQYYLAPGATGRIAKEIILPFE 299

Query: 309 AEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKD 368
            EE+ +L  +  +    KV + V  +GE+ + ++ A  NA  S   K ST+ S       
Sbjct: 300 IEESQVLGEALTQISERKVTLKVVTRGERAQYLQLANKNALNSIAVKQSTQDSINKRYAQ 359

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
                 L  I  R+E +D SH MG + V   VV    G    +YR++N+    +   DD 
Sbjct: 360 LKATLRLDDIT-RMECFDISHTMGENTVASCVVFDSQGPNTKEYRRYNV--TGITGGDDY 416

Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488
           A M   L +R+++L+  ++                PDV+ +DGGKGQL  A+        
Sbjct: 417 AAMEFALNKRYNKLVDEDK---------------IPDVIFIDGGKGQLGRAEQYFSNWPH 461

Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRK 547
                ++ +AKG  R  G+E   +  G   + ++   P L+ IQ +RDE+HRFAI  HR 
Sbjct: 462 TKMPLLVGVAKGTSRKPGLETLLIDGGRKTIPMDSDAPALHLIQHIRDESHRFAIAGHRN 521

Query: 548 RRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +R+K    S L+EING+G  R++ LL+  G ++ +  ++ E L  + GIS  +A KI+NH
Sbjct: 522 KRQKQRTQSLLEEINGVGSKRRQTLLKYLGGMQGVKAANIEQLKKVPGISPDMAEKIFNH 581

Query: 607 FH 608
            H
Sbjct: 582 LH 583


>gi|39998368|ref|NP_954319.1| excinuclease ABC subunit C [Geobacter sulfurreducens PCA]
 gi|81700975|sp|Q747I7|UVRC_GEOSL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|39985314|gb|AAR36669.1| excinuclease ABC, C subunit [Geobacter sulfurreducens PCA]
 gi|298507308|gb|ADI86031.1| excinuclease ABC, C subunit [Geobacter sulfurreducens KN400]
          Length = 613

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 192/623 (30%), Positives = 297/623 (47%), Gaps = 30/623 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
            +P+ PGVY M    G +LYVGKA +L+KR++SY      +   I  ++ ++ +I   VT
Sbjct: 9   TLPDAPGVYLMKGNGGDILYVGKAKSLRKRVRSYFSKGGESRYHIRFLVGRVADIDVIVT 68

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLE  +IK  +PR+N+ LRDDK++  + +    + P L   R        YFG
Sbjct: 69  DTEKEALLLENTLIKEHRPRYNLDLRDDKTYFSLRLDMNEEFPRLTIVRRPGRDGARYFG 128

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P++S  A  + +  L + F LR       R R RPCL +Q+++C+ PC G IS E Y   
Sbjct: 129 PYSSASAAREVLKQLYKLFPLRHYPLESCRRRRRPCLFYQLRQCAAPCHGLISGEDYQSL 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
              A  FL+G N +L     + M  A   E YE A  +RD + A+         +    D
Sbjct: 189 AEGAALFLAGKNSDLTRLYRQRMAAAAADERYEDAARYRDLIRAIEVTVEKQKMVAGDGD 248

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCPEN 302
              +   ++   +      +   R   +     D E  +A+ LS FL  +Y  D   P+ 
Sbjct: 249 TDVVGFFRDATDLSVSILFYRGGRLMGSRNYLLDWEMDDAEGLSSFLSGYYNRDVVIPDE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           IL+    ++T  L     ++ G K  +  P +G K +++  A  NA     +K   +   
Sbjct: 309 ILIPFTVDDTDPLGELLTERRGKKTVLRHPVRGTKAELVRLAARNAEAYLHEKREKDSGM 368

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           + +L +  +K  L ++P+RIE YD S I G  +VG  V        K  YR++ +    V
Sbjct: 369 EQVLGELKEKLHLTNLPRRIECYDISTIQGRYSVGSRVRFQNGAPDKAGYRRYRIRT--V 426

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD AMM  VL RRF                  +     PD++++DGG GQL+    +
Sbjct: 427 PGTDDFAMMHEVLSRRFRD---------------GHGGDGRPDLIVIDGGMGQLNVLTAI 471

Query: 483 LKKLNVENRITIISIAK-GPKRSAG--------MEKFFVKKGEALVLNMRDPILYFIQRL 533
           L++L +   I  +S+AK   +R+             F   +   +VL      L  + R+
Sbjct: 472 LEELGLHG-IDAVSLAKSRVERNMSDNEVVRSDERVFLPGRRNPVVLRQNGAPLLLLARI 530

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT H+K R K +  S L+ I GIG  RKR LL+ FG+++ + ++  E LA++
Sbjct: 531 RDEAHRFAITYHQKLRGKGSIRSSLEGIPGIGEKRKRELLKRFGSIRALRQADREQLAAV 590

Query: 593 EGISKKIACKIYNHFHKNTSHTP 615
             +S  +A  I+   H      P
Sbjct: 591 PSVSPALADAIWKALHGEEPEAP 613


>gi|257085336|ref|ZP_05579697.1| excinuclease ABC [Enterococcus faecalis Fly1]
 gi|256993366|gb|EEU80668.1| excinuclease ABC [Enterococcus faecalis Fly1]
          Length = 598

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 185/616 (30%), Positives = 311/616 (50%), Gaps = 41/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++S+I++  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+I +  P++NI+L+DDK++P+I IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V+A  +T   L R F LR C       +  PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           E K FLSGG+  +++++   M  A    ++E A   RD++ A+  +       +      
Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             +++ A +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ ++ ++ S+  +   K       I  P++GEK+K+++ A  NA    +      +  
Sbjct: 306 VLIPDDIDKESVEALLATK-------ILQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    KN+YRK+ + 
Sbjct: 359 QERTIGAVEKLGNVMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+S+++K                  +PD++++DGGKGQ+  
Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  +AK  K     E  F    E + L       + +QR++DE H
Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNSQEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L    G+ +
Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578

Query: 598 KIACKIYNHFHKNTSH 613
            +A  +Y H H+ T+ 
Sbjct: 579 TVAKNVYRHLHQETTS 594


>gi|256825143|ref|YP_003149103.1| Excinuclease ABC subunit C [Kytococcus sedentarius DSM 20547]
 gi|256688536|gb|ACV06338.1| Excinuclease ABC subunit C [Kytococcus sedentarius DSM 20547]
          Length = 651

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 203/639 (31%), Positives = 319/639 (49%), Gaps = 40/639 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  GRV+YVGKA +L+ R+ SY         R   M++   ++ +TV 
Sbjct: 13  EIPTSPGVYRFRDTHGRVIYVGKAKSLRSRLSSYFQNPAQLHPRTRQMVNTGASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+PY+ +T   ++P     R +      Y+G
Sbjct: 73  NTEVEALQLEYAWIKEFDPRFNVKYRDDKSYPYLAVTWAEEVPRAMVMRGAKRKGNRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PFA   A+ +T++   R F +R+C+  V+       RPCLL  I +CS PC G ++ E++
Sbjct: 133 PFAQAWAIRETLDLATRVFPIRTCSKGVYNRAAAAGRPCLLGYIDKCSAPCVGAVTPEQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V++  +F+SG    L   +   M QA    D+E+A   RD L AL  +   +  ++N
Sbjct: 193 REIVNDFCRFMSGDTAGLLRDLRGRMEQAAADLDFENAARLRDDLGALEKVLEKSAVVFN 252

Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--T 295
                D F +  ++  A +Q      G+ RG   + +    +   A+ + + LRQFY   
Sbjct: 253 ETVDADLFGIADDELEAAVQVFHVRGGRIRGQRGWVVD-KEDHPTAEAIEHLLRQFYGTG 311

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           D+  P  +L+S +  +  +L        G +V I  P++G+K  ++   + NA  S  + 
Sbjct: 312 DEEIPREVLVSTDPTDHEVLTEWLTSMRGSQVTIRTPERGDKATLLRTVIRNAEESLARH 371

Query: 356 LSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +      +    L +  +   L   P RIE YD SH  G ++VG MVV  +    K++
Sbjct: 372 KMSRAGDLTARSAALAELEEALGLAEAPLRIECYDISHTQGENSVGSMVVFEDGLPRKSE 431

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFS---------------QLIKNEENLNFHPKKQ 456
           YR+F +        DD   M  VL RRF                +   ++E  +    + 
Sbjct: 432 YRRFIVRE----PADDTRAMAEVLTRRFRHGTSSPEGDDLSDGPRQGASDEAGDSTSPRP 487

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
              F   P ++++DGG  Q+++A+  L     E+ I ++ +AK  +     E +      
Sbjct: 488 AKRFAYPPQLIVVDGGLPQVNSARAALDAAGAED-IAVVGLAKRLE-----EVWVPGDDF 541

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575
            LVL      L+ +QRLRDEAHRFAIT HR+RR K    S LD + G+GP R+R LL++F
Sbjct: 542 PLVLPRSSDALFLLQRLRDEAHRFAITFHRQRRSKAMTASELDTVPGLGPARRRALLEAF 601

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           GTV+ I  ++PE LA++ GI   +A  +  H   +T+  
Sbjct: 602 GTVRAIRAATPEELAAVPGIGPGLARTVQEHLSGSTAAP 640


>gi|326796055|ref|YP_004313875.1| UvrABC system protein C [Marinomonas mediterranea MMB-1]
 gi|326546819|gb|ADZ92039.1| UvrABC system protein C [Marinomonas mediterranea MMB-1]
          Length = 607

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 218/613 (35%), Positives = 341/613 (55%), Gaps = 26/613 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M      +LYVGKA NL+ R+ SY  +   T +   ++S+I+ I  T+T 
Sbjct: 14  HLTTRPGVYRMYGK-DELLYVGKAKNLKNRVSSYFRATGLTTKTMALVSRIDAIEITITK 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK+ +P +NILLRDDKS+PYIL++  H  PAL   R    ++G  +GP
Sbjct: 73  SETEALLLEQTLIKQHRPPYNILLRDDKSYPYILLS-HHDHPALLFRRGGKKVEGKLYGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183
           F S  AV ++++++Q+ F +R C DS + +RTRPCL +QIKRCSGPC    I+ E+Y   
Sbjct: 132 FPSGTAVRESLSTMQKVFKVRQCEDSYYANRTRPCLQYQIKRCSGPCVDGLIADEEYAND 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V  A+ FL G N  L  +I   M  A +  ++E A   RD++  L HIQ   +       
Sbjct: 192 VRHARMFLEGKNQELVSEITAQMKTAAVDMEFERAAELRDQVVQLKHIQEEQNVYGQSGD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299
            D  +        C+       G+  G+ +++ K   E + A++LS F+ QFY       
Sbjct: 252 ADIVAAIIQPGGLCVHLMLVRQGKVTGSKSYYPKMPIEISEAELLSNFVAQFYLSGGHEL 311

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P++I+LS + E+  +L+ + F+    KV+IT   +G++ + ++   +NA +    +L  +
Sbjct: 312 PKSIILSHDVEDMDVLQAALFETSKRKVEITSQVRGQRARWLDLVKLNAEQGLQARLMDK 371

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +H   +    K       P  +E +D SH  G + V   VV G +G  K +YR FN+  
Sbjct: 372 RNHFSRVAALQKVLGFKSPPSHMECFDISHSSGEATVASCVVFGPDGPDKKRYRSFNIEG 431

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V+  DD   M+  L+RR+ ++   E                 PDV+++DGGKGQL+ A
Sbjct: 432 --VEAGDDYGAMKQALQRRYKRVKDGE--------------IDAPDVLLIDGGKGQLTQA 475

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAH 538
           + VLK+L + + I ++ +AKG  R  G+E  ++   E  +VL      L+ IQ +RDEAH
Sbjct: 476 EDVLKELGLVD-IFLLGVAKGDTRKPGLETLYIGSKEDEVVLPPDSSALHLIQHIRDEAH 534

Query: 539 RFAI-TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFA+ +  R+R KK  +S L+EI G+GP R++ LL SFG  + +  +S E +A ++GIS 
Sbjct: 535 RFAVKSHRRRRDKKRRHSVLEEIPGVGPTRRKDLLTSFGGYQELLAASQEEIAKVKGISA 594

Query: 598 KIACKIYNHFHKN 610
           K A +IY + HK+
Sbjct: 595 KKAEEIYQYLHKS 607


>gi|290475674|ref|YP_003468563.1| DNA exisiton repair enzyme together with UvrAB [Xenorhabdus
           bovienii SS-2004]
 gi|289174996|emb|CBJ81799.1| DNA exisiton repair enzyme together with UvrAB [Xenorhabdus
           bovienii SS-2004]
          Length = 588

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 212/606 (34%), Positives = 326/606 (53%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  +   + +   ++  I  I  TVT TE EALLLE 
Sbjct: 1   MYDTTGSVIYVGKAKDLKKRLSSYFRTQVGSRKTESLVKNIVQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+PYI ++     P L  +R +   +G YFGPF +  AV  T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPYIFLS-GDTHPRLTLYRGAKHAKGEYFGPFPNSHAVRDT 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C DSV+R+R+RPCL +QI RC  PC    +++E+Y + V   + FLSG
Sbjct: 120 LALLQKLFPIRQCEDSVYRNRSRPCLQYQIGRCLAPCVNGFVTNEEYQQQVDYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRMDCFSLYHNK 251
            +  +  ++   M  A+ +  +E A  +RD++ A+  +          + +D  S+  + 
Sbjct: 180 KDQQVLTELVGRMEAASKQLQFEDAARYRDQIQAVRQVTERQFVSGEGDDLDVISVAFDT 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307
            +AC+   F   G+  G+ +++ K  +++   +++  FL QFY     ++  P  ILL  
Sbjct: 240 GMACLHVLFIRQGKILGSRSYYPKIPADTKLDEVVQTFLGQFYLQGSQNRTLPAEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              E  LLE S  +  G KV I    +G++ + ++ A  NA  + T KLS + +    L 
Sbjct: 300 SLPEKELLEASLSELSGRKVHIQPRPRGDRARYLKLARTNAAIALTTKLSQQSTVHQRLA 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
              +   +     R+E +D SH MG   V   VV   NG V+++YR++N+    +   DD
Sbjct: 360 SLAEFAGIK-KVHRMECFDISHTMGEQTVASCVVFDGNGPVRSEYRRYNI--AGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL RR+ + I+                   PD++ +DGGKGQL+ A  V   L+
Sbjct: 417 YAAMNQVLRRRYGKAIEQ---------------TRIPDIIFIDGGKGQLAQALEVFGSLD 461

Query: 488 VE---NRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           VE   N   +I +AKG  R AG+E  F + +G    L+   P L+ IQ +RDE+H  AIT
Sbjct: 462 VEWNKNHPKLIGVAKGSDRKAGLETLFFEAEGGGKALSSDSPALHVIQHIRDESHNHAIT 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR+RR K    S L+ I GIGP R+++LL+  G ++ +  +S E +A +  IS  +A K
Sbjct: 522 GHRQRRDKVKKTSTLESIEGIGPKRRQMLLKYMGGLQPLRNASVEEIAKVPSISYSLAEK 581

Query: 603 IYNHFH 608
           IYN   
Sbjct: 582 IYNALK 587


>gi|16803274|ref|NP_464759.1| excinuclease ABC subunit C [Listeria monocytogenes EGD-e]
 gi|224503811|ref|ZP_03672118.1| excinuclease ABC subunit C [Listeria monocytogenes FSL R2-561]
 gi|254828594|ref|ZP_05233281.1| uvrC [Listeria monocytogenes FSL N3-165]
 gi|32130304|sp|Q8Y7P0|UVRC_LISMO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|16410650|emb|CAC99312.1| uvrC [Listeria monocytogenes EGD-e]
 gi|258600992|gb|EEW14317.1| uvrC [Listeria monocytogenes FSL N3-165]
          Length = 603

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/622 (29%), Positives = 299/622 (48%), Gaps = 45/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M +A    ++E A   RD++ A+           N     
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPQE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L  + +  ++  +          KI VP++G K+ +++ A  NA  +  +K       
Sbjct: 307 IYLPNDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K                   PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +    G+ 
Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASIEEIKEA-GVP 579

Query: 597 KKIACKIYNH---FHKNTSHTP 615
             +A +++ H   F++   +T 
Sbjct: 580 LNVAEEVHKHITAFNEKAKNTE 601


>gi|77918168|ref|YP_355983.1| excinuclease ABC subunit C [Pelobacter carbinolicus DSM 2380]
 gi|90110992|sp|Q3A734|UVRC_PELCD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|77544251|gb|ABA87813.1| Excinuclease ABC subunit C [Pelobacter carbinolicus DSM 2380]
          Length = 612

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 194/621 (31%), Positives = 309/621 (49%), Gaps = 32/621 (5%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCT 65
           P   GVY M   AG V YVGKA NL+ R++SY     ++  +I  ++ ++++I   VT T
Sbjct: 10  PTASGVYLMKGEAGTVFYVGKAKNLRSRLRSYFSEHGDNRPQIRFLLKRVHDIETIVTDT 69

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EAL+LE  +IK+ +PR+NI LRDDK++  + +  + + P L   R        YFGP+
Sbjct: 70  EKEALILENTLIKKYRPRYNINLRDDKTYLSLRLDPRQEFPMLQLVRRVRRDGALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
           AS  AV  T+  + R F LR       R R+RPCL +QI +CS PC G+IS+E Y   V 
Sbjct: 130 ASSTAVRATLQEIYRIFPLRRHPWESCRSRSRPCLYYQIGQCSAPCHGKISAEDYQRLVD 189

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242
            A   L+G    + E +   M  A  +  +E A   RD+L A+         +       
Sbjct: 190 GALALLAGRESEVVESLQHQMAAAAERMAFEEAARLRDQLRAIEQTVERQKVVEAGGGDQ 249

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D   L+       +   F   G+     ++ L+   +     + ++  R +  D   P+ 
Sbjct: 250 DVVGLHREGGEVELAILFVREGKVIDRRSYNLEWRLDEEEL-LSTFLQRFYGRDVCIPDR 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +LL    E + +L     +Q G KV++  P +G +RK++  A  NA  S  ++ S   + 
Sbjct: 309 VLLPFLPEGSEVLAEWLSEQRGKKVQVLAPLRGTRRKLVALAARNAEESFRERGSRREAR 368

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           Q +L++  ++  L   P RIE +D S++ G  +VG M V+ +    K  YR F +    V
Sbjct: 369 QGVLEEIARRLHLTRFPHRIECFDISNVQGRFSVGSMAVLSDGEPDKGAYRHFRIRS--V 426

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           +  DD A +  V                    ++     S PD +++DGGKGQL+    V
Sbjct: 427 EGSDDYASLYEV---------------LRRRLERGLREESLPDFILMDGGKGQLNIVCTV 471

Query: 483 LKKLNVENRITIISIAK--------GPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRL 533
           L +LN+  RI +  IAK        G       E+FF   +  ++ L    P L+ ++RL
Sbjct: 472 LDELNLTGRIDVAGIAKSRVMANVRGKAVERSEERFFLPGRKNSVNLRQGSPALFMLERL 531

Query: 534 RDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT HRK R+++   S L+EI G+G  R++ LL+ FG++K +  +S + L ++
Sbjct: 532 RDEAHRFAITHHRKLRRRSTLGSVLEEIPGVGEKRRKALLKHFGSLKAVQAASLDELRAM 591

Query: 593 EGISKKIACKIYNHFHKNTSH 613
            G+   +A +I+  F +  + 
Sbjct: 592 PGLPAALAERIHAAFQERKTS 612


>gi|257465342|ref|ZP_05629713.1| excinuclease ABC subunit C [Actinobacillus minor 202]
 gi|257451002|gb|EEV25045.1| excinuclease ABC subunit C [Actinobacillus minor 202]
          Length = 590

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 210/607 (34%), Positives = 328/607 (54%), Gaps = 32/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G ++YVGKA +L+KR+ SY  S   + +   ++SQI +I  T+T +E EALLLE 
Sbjct: 1   MYDDKGTIIYVGKAKDLKKRLSSYFRSTLASRKTEALVSQIAHIDTTITHSETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +P++N+LLRDDKS+PYIL+T KH+ P L   R S  I G YFGP+ +  AV +T
Sbjct: 61  NYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRLASFRGSKKIAGEYFGPYPNAGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193
           +N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y + V   + FL G
Sbjct: 120 LNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250
            +  + E +   M +A    D+E+A   RD++  +  +           + +D  S+ + 
Sbjct: 180 KDQQVIEHLIGKMEKAAEDLDFEAAARFRDQIQQVRAVTEKQFVSNERLDDLDIISIAYQ 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306
             +AC+   F   G+  G+ ++F K  + +  A++   F+ QFY      +  P  I++ 
Sbjct: 240 HGIACVHILFVRQGKVLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID 299

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
               E   LE    +Q G+KV IT   +GEK + +  A  NA  + T +L  +   Q   
Sbjct: 300 HPVSEVDALEKVLSEQAGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRY 359

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           +      +LP I  R+E +D SH MG   V   VV  ENG +K+ YR+FN+    +   D
Sbjct: 360 EALQAVLSLPKIA-RMECFDISHTMGEQTVASCVVFDENGPLKSDYRRFNIEG--ITGGD 416

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A M   L +R+ + +  E+                PD++ +DGGKGQL+ A      L
Sbjct: 417 DYAAMEQALLKRYDKPLPPEK---------------IPDIIFIDGGKGQLNRALETFANL 461

Query: 487 NVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            VE   ++  +I +AKG +R AG+E   + K  + + L    P L+ IQ +RDE+H  AI
Sbjct: 462 KVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAI 521

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           + HRK+R+KA   S L+ I+G+G  R++ LL+  G ++ +  ++ E + S+ GIS  +A 
Sbjct: 522 SGHRKKRQKAFTESGLEAISGVGAKRRQALLKYLGGMQGVKAATLEEIQSVPGISASLAE 581

Query: 602 KIYNHFH 608
            I++  H
Sbjct: 582 TIFDTLH 588


>gi|184200852|ref|YP_001855059.1| UvrABC system protein C [Kocuria rhizophila DC2201]
 gi|229558036|sp|B2GH80|UVRC_KOCRD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|183581082|dbj|BAG29553.1| UvrABC system protein C [Kocuria rhizophila DC2201]
          Length = 689

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 195/673 (28%), Positives = 323/673 (47%), Gaps = 68/673 (10%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTV 62
           + +P  PGVY+  D  GRV+YVGKA NL+ R+ SY    +    +   M++    +++TV
Sbjct: 12  QDIPTNPGVYRFRDEHGRVIYVGKAKNLRNRVSSYFAPLHQLAPKTRAMVTTAAAVQWTV 71

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E E+L LE   IK   PRFNI  RDDKS+PY+ +T    +P     R        YF
Sbjct: 72  VGSEFESLQLEYTWIKEFAPRFNIAYRDDKSYPYLAVTMSEDVPRAMVTRGEKKPGNRYF 131

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEK 179
           GP++   A+  T+++L R F +R+C   V++      RPCLL  I +CS PC G IS E+
Sbjct: 132 GPYSQAWAIRDTLDALLRVFPVRTCTTGVYQRAERSGRPCLLGYIDKCSAPCVGNISQEE 191

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           + E   +  +F++G       ++ R MN+A    D+E+A   RD + AL  +   N  + 
Sbjct: 192 HRELADDLCRFMAGHAKPYIRELTRQMNEAAECMDFETAAARRDDVGALERVFERNTVVL 251

Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D F++  ++  A +Q      G+ RG   +  +   + T AQ+++  L+Q Y +
Sbjct: 252 TDSTDADFFAIAEDELEAAVQVFHVRGGRIRGQRGWITEKVEDVTTAQLMTNLLQQVYGE 311

Query: 297 K-------------------------------------PCPENILLSEEAEETSLLEISF 319
                                                   P  + +S   +E   +    
Sbjct: 312 AQSGLAPAASGRRRTARHGSEDVVGQHRRTSELAYRQDTIPRAVHVSVLPDEADEIRAWL 371

Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFAL 375
            +  G +V +  P++G+K +++E    NA ++ T   S       +    L+   +   L
Sbjct: 372 SELRGSQVTVQRPQRGDKAQLLETVAENARQALTLHKSRRAGDLTTRSASLQQLQEALGL 431

Query: 376 PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435
           P    RIE YD SH+ G + V  MVV  +    K++YRKF++  +    +DD A M  V+
Sbjct: 432 PDALMRIECYDISHVQGTNVVASMVVFEDGLPRKSEYRKFSITGD--AARDDTASMYDVI 489

Query: 436 ERRFSQLIKNE-----------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            RRFS+ ++ +           E      +    +F   P++VI+DGG  Q++AAQ  L 
Sbjct: 490 HRRFSRHVEQQRRAAEKGVSTGEVAADDDEGTTRAFAYPPNLVIVDGGPPQVAAAQRALD 549

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
            L V + + ++ +AK  +     E +       ++L      L+ +QR+RDEAHRFAIT 
Sbjct: 550 DLRVTD-VHVVGLAKRLE-----EVWVPDDEFPVILPRASEGLFLMQRVRDEAHRFAITF 603

Query: 545 HRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR++R KA   S LDE+ G+GP +++ LL+ FG+VK +  ++ E +  ++G    +A K+
Sbjct: 604 HRQKRSKAMTVSALDEVPGLGPAKQKALLKHFGSVKKLRAATAEQILEVKGFGPALAVKV 663

Query: 604 YNHFHKNTSHTPT 616
                   + + T
Sbjct: 664 AQALGGEAAASST 676


>gi|269139389|ref|YP_003296090.1| excinuclease ABC subunit C [Edwardsiella tarda EIB202]
 gi|267985050|gb|ACY84879.1| excinuclease ABC subunit C [Edwardsiella tarda EIB202]
          Length = 588

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 208/607 (34%), Positives = 324/607 (53%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D    V+YVGKA +L+KR+ SY      + +   ++ QI  I  TVT TE EALLLE 
Sbjct: 1   MYDAGAEVIYVGKAKDLKKRLASYFRRQLASRKTEALVRQIAQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IKR +PR+N+LLRDDKS+P I ++   + P L  HR +   +G YFGPF + +AV +T
Sbjct: 61  NYIKRYQPRYNVLLRDDKSYPLIFLS-AERHPRLAVHRGAKRARGDYFGPFPNANAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C DSV+R+R+RPCL +QI+RC GPC    +S E+Y   V   + FLSG
Sbjct: 120 LALLQKLFPIRQCEDSVYRNRSRPCLQYQIQRCLGPCVAGLVSDEEYARQVEYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRMDCFSLYHNK 251
            +  + + +   M +A+    +E A   RD++ A+  +         ++ +D   +    
Sbjct: 180 KDSQVIDALVARMEEASRALRFEEAARLRDQIQAVRRVTERQFISGDHDDIDVIGVAFEA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            +ACI   F   GQ  G+ ++F +  + +T A++L  F+ QFY      +  P  IL+  
Sbjct: 240 GMACIHVLFIRQGQVLGSRSYFPRVPAGTTLAEVLQTFVGQFYLQGSQMRTLPGEILIDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              +  LL  S  +  G ++ I    +G++ + ++ A  NA  +   KLS + +    L 
Sbjct: 300 ALPDRQLLADSISELAGRRIHIQSQPRGDRARYLKLARTNASTALNSKLSQQSTILQRLA 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
              +        +R+E +D SH MG   V   VV   NG ++++YR++N+    +   DD
Sbjct: 360 QLEQVLR-RADIQRMECFDISHTMGEETVASCVVFDRNGPLRSEYRRYNISD--ITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A MR VL RR+ + +  E+                PDV+ +DGGKGQL+ A+ V  +L 
Sbjct: 417 YAAMRQVLRRRYGKALNEEK---------------IPDVIFIDGGKGQLAQAKQVFAELE 461

Query: 488 VE---NRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V    +   ++ IAKG  R AG+E  F + +GE   L      L+ IQ +RDE+H  AI 
Sbjct: 462 VPWDTHHPLLLGIAKGSDRKAGLETLFFEAQGEGFSLAPDSAALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRK+R K    S L+ I GIGP R++ LL+  G ++ +  +S + +A + GIS  +A K
Sbjct: 522 GHRKKRAKVRSTSALESIEGIGPKRRQQLLKYMGGMQPLRDASVDEIAKVPGISVALAEK 581

Query: 603 IYNHFHK 609
           I+    +
Sbjct: 582 IHYALKQ 588


>gi|116872605|ref|YP_849386.1| excinuclease ABC subunit C [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463712|sp|A0AHX5|UVRC_LISW6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|116741483|emb|CAK20607.1| excinuclease ABC, C subunit [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 603

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 180/622 (28%), Positives = 300/622 (48%), Gaps = 45/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M  A    ++E A   RD++ A+           N     
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQVAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L ++ +  ++  +          KI VP++G K+++++ A  NA  +  +K       
Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKELVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K                   PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKER--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ V + +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLINELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +    G+ 
Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-GVP 579

Query: 597 KKIACKIYNH---FHKNTSHTP 615
             +A +++ H   F++   +T 
Sbjct: 580 MNVAEEVHKHITTFNEKAKNTE 601


>gi|169832456|ref|YP_001694096.1| excinuclease ABC subunit C [Streptococcus pneumoniae Hungary19A-6]
 gi|229557868|sp|B1IAG1|UVRC_STRPI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|168994958|gb|ACA35570.1| excinuclease ABC, C subunit [Streptococcus pneumoniae Hungary19A-6]
          Length = 615

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 168/621 (27%), Positives = 290/621 (46%), Gaps = 41/621 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+  A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVHIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDDIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHT 614
           G+ + +A  +    +   +  
Sbjct: 575 GVPRAVAEAVQRKLNPQEAEA 595


>gi|76875758|emb|CAI86979.1| DNA repair enzyme together with UvrAB; incision nuclease subunit C;
           repair of UV damage to DNA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 586

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 215/602 (35%), Positives = 325/602 (53%), Gaps = 27/602 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           MLD   +V+YVGKA +L+KR+ SY  SN    +   ++S I N+  T+T TE EALLLE 
Sbjct: 1   MLDSDNQVIYVGKAKHLKKRVSSYFRSNITDSKTRVLVSNICNVEVTLTNTETEALLLEN 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N+IK+ +PR+NILLRDDKS+PYIL+T+ HK P L  HR S  ++G YFGPF S  AV ++
Sbjct: 61  NLIKKYQPRYNILLRDDKSYPYILLTN-HKHPRLAFHRGSRKVKGEYFGPFPSAGAVSES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           +  +Q+ F +R C D  +R R+RPCL +Q+KRCS PC  ++S E Y E V   +KFL+G 
Sbjct: 120 LRLMQKIFPIRQCEDVYYRARSRPCLQYQLKRCSAPCVNKVSDEDYTEQVDYVRKFLTGK 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFSLYHNKN 252
           +H +   + + M  A+ + ++E A   RD++  L  +Q       N   MD     H   
Sbjct: 180 SHEVIADLIKKMEAASQQLNFELAAKVRDQIMLLRKMQEQQSISGNFAEMDVVGFAHLNG 239

Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSEE 308
           L  I        +  G+ T+F K   +S+  +IL+ FL Q+Y          + I+L  E
Sbjct: 240 LNGIHLLMIRDHKVLGSKTYFPKVPKDSSEQEILTSFLGQYYLAPGATGRIAKEIILPFE 299

Query: 309 AEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKD 368
            +E+ +L  +  +    KV + V  +GE+ + ++ A  NA  S T K ST+ S       
Sbjct: 300 IQESDVLGQALTQISERKVTLKVVTRGERAQYLQLANKNALNSITVKQSTQDSINKRYAQ 359

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
                 L  I  R+E +D SH MG + V   VV    G    +YR++N+    +   DD 
Sbjct: 360 LKATLRLDDIT-RMECFDISHTMGENTVASCVVFDSQGPNTKEYRRYNV--TGITGGDDY 416

Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488
           A M   L +R+++L+  ++                PDV+ +DGGKGQL  A+        
Sbjct: 417 AAMEFALNKRYNKLVDEDK---------------IPDVIFIDGGKGQLGRAEQYFATWPH 461

Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRK 547
                ++ +AKG  R  G+E   +  G   + ++   P L+ IQ +RDE+HRFAI  HR 
Sbjct: 462 AKMPLLVGVAKGTSRKPGLETLLIDGGRKTIPMDSDAPALHLIQHIRDESHRFAIAGHRN 521

Query: 548 RRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +R+K    S L+EING+G  R++ LL+  G ++ +  ++ E L  + GIS  +A KI+NH
Sbjct: 522 KRQKQRTQSLLEEINGVGAKRRQTLLKYLGGMQGVKAANIEQLKKVPGISPDMADKIFNH 581

Query: 607 FH 608
            H
Sbjct: 582 LH 583


>gi|167768134|ref|ZP_02440187.1| hypothetical protein CLOSS21_02689 [Clostridium sp. SS2/1]
 gi|317499776|ref|ZP_07958031.1| excinuclease ABC [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709658|gb|EDS20237.1| hypothetical protein CLOSS21_02689 [Clostridium sp. SS2/1]
 gi|291560163|emb|CBL38963.1| excinuclease ABC, C subunit [butyrate-producing bacterium SSC/2]
 gi|316892942|gb|EFV15169.1| excinuclease ABC [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 622

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 189/622 (30%), Positives = 307/622 (49%), Gaps = 21/622 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M +    ++YVGKA  L  R++ Y   + N + +I HM+  +    +
Sbjct: 7   ELKKLPAKPGVYLMHNSKDEIIYVGKAIKLCNRVRQYFQDSRNLSVKIQHMVKNVAYFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK   P++N  L+DDK +PYI +T   + P +   R      G 
Sbjct: 67  IITDSELEALVLENNLIKEHHPKYNTKLKDDKGYPYIKVTVNEEFPRIMLARKMKADGGK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV  TI  L++ F +R+C   + +   + RPCL +QIK+C  PC G IS E
Sbjct: 127 YFGPYTSAGAVNDTIELLRKIFKIRTCNRRLPKDTGKDRPCLYYQIKQCDAPCQGYISKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + E  KFL+G    + + +   M +A+ + ++E A+ +RD L ++  I +     
Sbjct: 187 EYAKQIEETIKFLNGNYKQVAKMLQEKMQKASDELEFEQAMEYRDLLKSIERIMDRQKIN 246

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +   D  ++  +     +   F   G+  G   F ++ D ES+  ++L  F++QFY 
Sbjct: 247 TYAFEDRDIIAMAQDDKDVVVSIFFIRQGKLLGREHFHMEADEESSKEEVLGAFVKQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--- 351
             P  P  I L  +  E  ++E    K+ G KV   +P +G+K K++E A  NA      
Sbjct: 307 GTPYLPGEIFLEHDISEKEIIEEWLSKKRGAKVHFKIPVRGQKHKMVEMAKENAQNVLRM 366

Query: 352 -HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      + +  +   +     R+E +D S+I G   V  MVV       + 
Sbjct: 367 DREKIKREERRTIGAVHEIEELLGME-GLNRMEAFDISNISGFQTVASMVVFERGKARRR 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YRKF L    ++  DD A M  VL RRF    K  EE           SF  +PD++++
Sbjct: 426 DYRKFRLRT--IEGPDDYASMEEVLTRRFLHGKKELEELKEQGKDTTLGSFTKFPDILMM 483

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ A  VL  L ++  I +  + K                E ++          
Sbjct: 484 DGGKGQVNVALRVLDHLGLD--IPVCGMVKDDDHRTRG---LYYNNEEIIFAPNSEAFLL 538

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + R++DEAHRFAI  HR  R K   +S LD+I G+GP R++ L++ F  +  I  ++   
Sbjct: 539 VTRIQDEAHRFAIEYHRSLRAKGQVHSVLDDIKGVGPKRRKELMKYFKDLGQIKTATVTE 598

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           L ++ G+++  A  IY  FH +
Sbjct: 599 LLNVPGMNQSTAESIYGFFHDS 620


>gi|150019667|ref|YP_001311921.1| excinuclease ABC subunit C [Clostridium beijerinckii NCIMB 8052]
 gi|189038037|sp|A6M2Y5|UVRC_CLOB8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|149906132|gb|ABR36965.1| excinuclease ABC, C subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 621

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 198/620 (31%), Positives = 326/620 (52%), Gaps = 19/620 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P  PGVY M +  G ++YVGKA  L+ R++ Y   S NH+ ++  M+  +    +
Sbjct: 7   QLKILPNEPGVYLMKNSLGEIIYVGKAKILKNRVRQYFQNSKNHSEKVKAMVKNVAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+  P++NI L+DDK +P+I +T     P ++  R+ +     
Sbjct: 67  IVTDSEMEALILECNLIKKYSPKYNISLKDDKFYPFIKVTTNEDFPRVFITRNYAKDGNK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF--RHRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +   V +TIN +++ F LR+C  S+      TR CL + IK+C+ PC G IS  
Sbjct: 127 YFGPYPNAGDVHETINLIRKIFPLRTCKKSIIEGEKPTRACLNYHIKKCNAPCEGRISKT 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + E  + LSG + +L  K+   M  A+   ++E A   RD++ A+ +I       
Sbjct: 187 EYKKMIDEIMEVLSGKDRSLLNKLKEEMQSASGNLEFEKAASLRDKMIAIENIAEKQKVF 246

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               N  D  ++Y ++   CIQ  F   G+  G   F ++  S   +  I+S F+  FY 
Sbjct: 247 KSQENDEDFINIYKDEKDCCIQVFFLRDGKITGREHFMIENSSHEEDTTIISQFIISFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
             P     +   E++E   LE     + G +V + VP +GEK++++E    NA     + 
Sbjct: 307 GTPKVPKNIYIPESDEIEALEEFLSIKRGSRVFVKVPIKGEKKEMLELVKNNAKVTLDQF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  +  + + LK+  +   L  IP RIE YD S+I G  +VG M+V        + 
Sbjct: 367 KDKILRDKEINMISLKEIQELLELDSIPLRIEAYDISNIQGVDSVGSMIVFENGKAKNSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F +    VK+ +D   MR +L+RRF+  +K  EE  N   K     F ++PD++++D
Sbjct: 427 YRRFRIKT--VKSANDYDSMREILDRRFTHGLKEIEEIQNKEIKFSSGKFSNFPDLIMMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL+KL ++  I +  + K    +       +     L++N    ++  I
Sbjct: 485 GGKGQVNIALEVLEKLGID--IPVCGLVKDDYHATRG---IIYNNNELIINRNSNLMQMI 539

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           +R++DE HRFAIT HR  R K+  +S LD+I  IG  R+  LL  FG++  I +++ + L
Sbjct: 540 RRIQDEVHRFAITYHRSLRDKRTLHSILDDIPNIGQKRRMSLLMKFGSIDNIKKATLDEL 599

Query: 590 ASIEGISKKIACKIYNHFHK 609
              E I  K A  +  +F  
Sbjct: 600 LETESIDTKAANSVLEYFRN 619


>gi|289168414|ref|YP_003446683.1| excinuclease, subunit C [Streptococcus mitis B6]
 gi|288907981|emb|CBJ22821.1| excinuclease, subunit C [Streptococcus mitis B6]
          Length = 615

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 169/621 (27%), Positives = 290/621 (46%), Gaps = 41/621 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C            + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTVCRKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMAVAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ +E +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQEIDEEAIKALVDTKIVK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++              ++   + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRV--------------QHDGLTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHT 614
           G+ + +A  +    +   +  
Sbjct: 575 GVPRAVAEAVQRKLNPQEAEA 595


>gi|86604931|ref|YP_473694.1| excinuclease ABC subunit C [Synechococcus sp. JA-3-3Ab]
 gi|119367850|sp|Q2JXP8|UVRC_SYNJA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|86553473|gb|ABC98431.1| excinuclease ABC, C subunit [Synechococcus sp. JA-3-3Ab]
          Length = 621

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 197/621 (31%), Positives = 303/621 (48%), Gaps = 36/621 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61
            +++P  PGVY M D   ++LYVGK+  L+ R++SY   + + + RI  M+ Q+  I F 
Sbjct: 16  LKEIPAEPGVYLMRDATDQILYVGKSKKLRSRVRSYFRFTGDLSPRIQRMVVQVCEIEFI 75

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119
           VT  E EAL LE N+IK  +P +N+LL++DK +PY+ IT     P +Y  R       Q 
Sbjct: 76  VTDNESEALALEDNLIKTYQPPYNVLLKEDKKYPYLCITWSEPYPQIYITRHRRLNQNQD 135

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+  V  +  T+  ++R F LR     ++  + RPCL + I RC G C G IS E 
Sbjct: 136 KYYGPYTDVGLLRYTLGLVKRIFPLRQRPKPLY--KDRPCLNYDIGRCPGVCQGLISPEA 193

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + V +      G    L  ++   M QA  +E+YE+A  +RD++  L  +        
Sbjct: 194 YRKTVAQVAMIFQGQTDELIRELKEKMAQAAQQENYEAAARYRDQIRGLEQLGQSQKVSL 253

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  N + ACIQ      G+  G   F  +   +     +       +  
Sbjct: 254 PNSTASRDAIALAMNDSRACIQLFQVRAGKLVGRLGFVAENRGDDPALILQRVLQEHYQY 313

Query: 296 DKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             P   P  IL   E  +   LE    ++ G KV +  P++  K ++IE    NA     
Sbjct: 314 CDPVEIPSEILTQYELPDRDFLESWLSQKKGRKVSLLAPQRQSKAELIELVERNAQLELA 373

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +           L+   +   LP  P+R+E YD SHI G  AVG  VV  +    K  YR
Sbjct: 374 RSQRLAEREAAALERLAEVLDLPEPPRRLEAYDISHIQGSDAVGSQVVFIDGLPAKQHYR 433

Query: 414 KFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           ++ +    V+     D A    V  RRFS++   ++                PD+V++DG
Sbjct: 434 RYKIRNPQVRPGHSDDFASHAEVARRRFSKMTSEDQ----------------PDLVLIDG 477

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQL+A   VL +L ++  + + ++AK  +     E F     E L L  +DP    +Q
Sbjct: 478 GKGQLAAVMAVLAELGLD-HLPVFALAKREE-----EIFRPGDPEPLRLPPQDPARLLLQ 531

Query: 532 RLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           RLRDEAHRFA+  HR++RK +   S L+EI G+G  R++LL+++F ++  I  ++ E LA
Sbjct: 532 RLRDEAHRFALAYHRQQRKLRQQASVLEEIPGLGKQRQKLLMEAFRSLARIQVATEEQLA 591

Query: 591 SIEGISKKIACKIYNHFHKNT 611
            + GI  K+A +IY +FH   
Sbjct: 592 QVPGIGPKLARQIYRYFHPEA 612


>gi|119510472|ref|ZP_01629605.1| excinuclease ABC subunit C [Nodularia spumigena CCY9414]
 gi|119464894|gb|EAW45798.1| excinuclease ABC subunit C [Nodularia spumigena CCY9414]
          Length = 628

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 198/621 (31%), Positives = 312/621 (50%), Gaps = 29/621 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY M D   R++Y+GK+  L+ R++SY   SN+ +HRI  M+ Q+  I F VT
Sbjct: 23  EIPSEPGVYFMRDGEDRIIYIGKSKKLRSRVRSYFQDSNHKSHRIATMVQQVTEIEFIVT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121
            TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R      ++  +
Sbjct: 83  DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFITRKRQIGKLRDKF 142

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     + + +N  +R F LR     +F  + RPCL + + RC G C   IS E+Y 
Sbjct: 143 YGPYTDTGLLREILNISKRIFALRQRPQPLF--KDRPCLNYDLGRCPGVCQQLISPEEYR 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V +      G    L + +   M  A    ++E A   RD+++ L  +          
Sbjct: 201 KTVQKVAMVFQGRTQELIDILTAQMQTAAEALNFELAARIRDQISGLKSLTADQKVSLPD 260

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +L  +K  ACIQ      GQ  G   F   + +E     IL   L   Y   
Sbjct: 261 DTVSRDALALASDKERACIQLFQIRAGQLVGRLAFIADSHAE--PGAILQRVLESHYQTA 318

Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  IL+  E  +  +L     ++ G KV I  P++  K +++E    NA     +
Sbjct: 319 DAVEIPAEILVQHELPDAEILADVLTQRKGRKVTILAPQRQTKAELVEMVERNAEYELQR 378

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                  +   ++D      LP +P RIE YD SHI G +AV   VV  +    K  YR 
Sbjct: 379 MQKLSDRNHEAIQDLANILDLPDLPHRIEGYDISHIQGSNAVASQVVFIDGLPGKQHYRH 438

Query: 415 FNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           + +    V +    D A +  V++RRF +  ++ +             P WPD++++DGG
Sbjct: 439 YKIKNPTVTSGHSDDFASLAEVIQRRFRKYGEDSQ-------LARVGNPDWPDLIMIDGG 491

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQLSA   VL+++++   + ++S+AK  +     E F   + + L  N   P +  ++R
Sbjct: 492 KGQLSAVVAVLQEMDLLEDLRVVSLAKQRE-----EIFLPGESQPLETNAEQPGVQLLRR 546

Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFA++ HR++R  K   S LDEI G+G  R++ LL  F +V  I +++P  LA 
Sbjct: 547 LRDEAHRFAVSFHRQQRSDKLKRSRLDEIPGLGHHRQKQLLGHFRSVDYIRQATPAQLAE 606

Query: 592 IEGISKKIACKIYNHFHKNTS 612
           + GI  ++A +IY++FH  + 
Sbjct: 607 VPGIGTRLAQEIYDYFHPASG 627


>gi|325958893|ref|YP_004290359.1| UvrABC system protein C [Methanobacterium sp. AL-21]
 gi|325330325|gb|ADZ09387.1| UvrABC system protein C [Methanobacterium sp. AL-21]
          Length = 590

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 196/611 (32%), Positives = 317/611 (51%), Gaps = 40/611 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PGVY + D A R+LYVGKA +L+KR+KSY   ++   +   +++Q +++ + 
Sbjct: 7   DPDDLPLVPGVYLLKDSADRILYVGKAKSLKKRVKSYFR-SDLDPKTRALMNQFHHLEYI 65

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE EAL+LE+N+IK+  PR+NI L+DDK +PYI +T+  K P +   R        Y
Sbjct: 66  VTDTEKEALILESNLIKKHMPRYNIRLKDDKRYPYIRVTN-EKFPRVIITRRVLDDGSYY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPF     + + +  ++  F +R       ++   PCL +QI  C  PC  +IS  +Y 
Sbjct: 125 YGPFTEATTLRRLVKFIKALFKVRD-----CKNMDGPCLNYQIDLCRAPCDNKISEAEYK 179

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             V     F  G    + + +   M  A    ++E A + RD++ ++  +       +  
Sbjct: 180 RMVDNVSMFFEGKYDQIMDALKEEMMDAAENHEFEKAAVLRDQINSVEDVLEKQKMEFTG 239

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297
               D  +   ++ LAC+       G+  G   F +     S+  +I++ FL+Q+Y   +
Sbjct: 240 DLDQDVIASASDEELACVAVFSVRNGKIIGREDFLMGGGENSSEEKIVTAFLKQYYMGPR 299

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  I+L ++ E+  L+E    ++    V I VP +G + ++ +    NA       L+
Sbjct: 300 HVPSKIILHKDIEDRKLIEEWLSEKREANVGIEVPVEGIEFRLAKMVSKNAQI----LLN 355

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            +   +  L D  K   +  IPKRIE YD S+I G +AVG MVV  +    K+ YR++ +
Sbjct: 356 HQKEVKGALVDLKKYLGIAKIPKRIEAYDISNISGQNAVGSMVVFEDGTPKKSAYRRYKI 415

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   DD AMM+ +L RRF+ LI N+++               PD+V++DGGKGQL+
Sbjct: 416 ETE---GPDDYAMMKEMLTRRFTNLINNQDSE--------------PDLVLVDGGKGQLN 458

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            A  V   LN+     +I +AK  +       F  +    L+L      L  +QR+RDEA
Sbjct: 459 IALEVFYSLNI--NYPVIGLAKEFEH-----VFIPQTPSPLILPRNSEALLLLQRIRDEA 511

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT H++ R K    SPLD+I G+G  R+ LLL+ FG+++ I  +  + L  ++GIS
Sbjct: 512 HRFAITYHKQLRSKEFKSSPLDKIPGVGNKRRMLLLKHFGSMENIMNADLDELQQVKGIS 571

Query: 597 KKIACKIYNHF 607
           KK+A  I++HF
Sbjct: 572 KKLANIIHDHF 582


>gi|332529104|ref|ZP_08405068.1| excinuclease ABC subunit C [Hylemonella gracilis ATCC 19624]
 gi|332041327|gb|EGI77689.1| excinuclease ABC subunit C [Hylemonella gracilis ATCC 19624]
          Length = 663

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 204/644 (31%), Positives = 322/644 (50%), Gaps = 44/644 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D AG +LYVGKA NL+KR+ SY    +   RI HM+ +I  +  TV  +
Sbjct: 23  LPSLPGVYRYFDAAGGLLYVGKARNLKKRVSSYFQKRHDGTRIGHMVGKIVRMETTVVRS 82

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILI---------TDKHKIPALYKHRDSST 116
           E EALLLE N+IK  +PR+NIL RDDKS+PY+ +          +      +  +R +  
Sbjct: 83  EAEALLLENNLIKTQQPRYNILFRDDKSYPYLKMTAASATAATNEASAWTRMAYYRGAVE 142

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
            +  Y+GP+ S  AV++ I  LQ+ F LR+C D+VF +RTRPCLL+QIKRCSGPC G I 
Sbjct: 143 KKHHYYGPYPSAWAVKEAIVLLQKVFRLRTCEDTVFSNRTRPCLLYQIKRCSGPCVGLIQ 202

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            E Y + V  A+ FL G    + +++   M   + K ++E A   RD+++ALS + +   
Sbjct: 203 PEAYAQDVAHAQAFLDGETQQVLQQLEARMLGHSEKLEFEQAAELRDQISALSSVLHQQA 262

Query: 237 SIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
                 + +D  ++  +   AC+       G++ G   +F     ++             
Sbjct: 263 VESVDDHDVDILAVKIHGGRACVNLAMVRGGRHLGDRAYFPSHVEDAAALHFAEAEGDDA 322

Query: 294 YTDKPCPENILLSEEAEET-----------------SLLEISFFKQYGYKVKITVPKQGE 336
           +   P  E  +L     +                  + L  +  +Q G +++     +G+
Sbjct: 323 HESGPSVETQVLEAFIAQHYVQVPAVPTLITGAQVSAELMEALTEQTGLRMRAVHQPRGQ 382

Query: 337 KRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK-------RIEIYDNSH 389
           +R  ++ A  NA     + L+ E S Q   +   +   LP +         RIE +D SH
Sbjct: 383 RRIWLDMAQTNADLQLARLLAEEGSQQARTRALAEALDLPQVSDPAGLDELRIECFDISH 442

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIK--NEE 447
             G +     VV   +    ++YR++    +++   DD A MR VL RR+ ++    +E 
Sbjct: 443 TAGEATQASCVVFHHHKMQSSEYRRY--KIDNITPGDDYAAMRQVLTRRYERIAARLSEA 500

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
                      +    PD+V++DGGKGQ+S A+ V ++L ++  I I+ + KG  R  G+
Sbjct: 501 RREGSTDSVIPAQAVMPDLVLVDGGKGQVSMAREVFEQLGLDLSI-IVGVEKGEGRKVGL 559

Query: 508 EKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIG 564
           E+     G + + L      L  + ++RDEAHRFAIT  R  R K     S L++I GIG
Sbjct: 560 EELVFADGRDKVYLGKDSAALMLVAQIRDEAHRFAITGMRAARAKVRTGGSRLEDIPGIG 619

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           P R+  LLQ FG  + +  +S E LA++EG+S ++A  IY   H
Sbjct: 620 PKRRARLLQRFGGARGVEAASVEDLAAVEGVSHELAEIIYRALH 663


>gi|256788436|ref|ZP_05526867.1| excinuclease ABC subunit C [Streptomyces lividans TK24]
 gi|289772326|ref|ZP_06531704.1| excinuclease ABC, C subunit [Streptomyces lividans TK24]
 gi|289702525|gb|EFD69954.1| excinuclease ABC, C subunit [Streptomyces lividans TK24]
          Length = 728

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 185/683 (27%), Positives = 317/683 (46%), Gaps = 80/683 (11%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+ PGVY+  D   RV+YVGKA +L++R+ +Y     +   R   M++   ++ +TV 
Sbjct: 13  EIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAHLHPRTRTMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R        YFG
Sbjct: 73  STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGQKKKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+  T++ L R F +R+C+  VF++     RPCLL  I +CS PC G I+ + +
Sbjct: 133 PYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRITPDDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +   E   F++G       ++ R M +A  + +YE A   RD + AL      +  +  
Sbjct: 193 WDLADEFCDFMAGRTGTYLRRLERQMAEAAEEMEYERAARLRDDIGALKKAMEKSAVVLA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++  ++  A +Q      G+ RG   +      E T   ++ + L+Q Y ++
Sbjct: 253 DATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEITTGALVEHALQQLYGEE 312

Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ +L+    +    ++    ++ G  V + +P++G+K+ ++E    NA ++   
Sbjct: 313 KGDAVPKEVLVPALPDPVEPVQQWLAERRGSGVSLRIPQRGDKKALMETVQRNAQQALVL 372

Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             +   S        L++  +   L   P RIE YD SH+ G   V  MVV  +    K+
Sbjct: 373 HKTKRASDLTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLARKS 432

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE------------- 457
           +YR+F +     + QDD   M  V+ RRF + +  +E        +              
Sbjct: 433 EYRRFQIKG--FEGQDDVRSMHEVITRRFRRYLAEKERTGEWADGEGLADDARHPNGDAA 490

Query: 458 ------YSFPSWPD--------------------------------------VVILDGGK 473
                     + PD                                      +V++DGG+
Sbjct: 491 QNGDAAPDDGAAPDDGAARTDGRGLTDGQELTDGPALKDDDGRPKRFAYPPQLVVVDGGQ 550

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q++AAQ  L +L +++ I +  +AK  +     E +  ++ + +VL      LY +QR+
Sbjct: 551 PQVAAAQRALDELGIDD-IAVCGLAKRLE-----EVWLPREDDPVVLPRTSEGLYLLQRV 604

Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT  R +R K     PLD++ G+G  RK+ L++ FG+VK +  ++ + +  +
Sbjct: 605 RDEAHRFAITYQRAKRAKRFRAGPLDDVPGLGETRKQALIKHFGSVKKLRSATIDQICEV 664

Query: 593 EGISKKIACKIYNHFHKNTSHTP 615
            GI +K A  +     + T   P
Sbjct: 665 PGIGRKTAETVAVALARATPAAP 687


>gi|21674621|ref|NP_662686.1| excinuclease ABC, subunit C [Chlorobium tepidum TLS]
 gi|32130301|sp|Q8KBI0|UVRC_CHLTE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|21647822|gb|AAM73028.1| excinuclease ABC, subunit C [Chlorobium tepidum TLS]
          Length = 626

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 187/633 (29%), Positives = 302/633 (47%), Gaps = 50/633 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
            +P  PGVY+  + AG V+YVGKA NL+ R++SY +S      +   M+S I ++   +T
Sbjct: 22  TLPTSPGVYRFSNAAGTVIYVGKARNLRNRVRSYFNSQGRQPGKTAVMVSHIADLNVIIT 81

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL+LE N+IK LKPR+N+ L+DDKS+P+++IT+  + P ++  R        YFG
Sbjct: 82  SSEVEALILENNLIKELKPRYNVNLKDDKSYPWLVITN-ERFPRIFLTRQVRRDGSLYFG 140

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSE 178
           P+     +   ++ +   F +RSC   +        R R CL + I +C GPC G  S E
Sbjct: 141 PYTEASQLRLILDLIGSIFPVRSCKYKLTEEAVASGRYRVCLDYHIHKCKGPCEGLQSEE 200

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   + E    L G    L   ++  M +   +  +E A   + ++  L         +
Sbjct: 201 EYQAMIREIVTLLKGKTSALLRDLSAEMQKKAKELKFEEAAALKAQIEGLKRYAERQKIV 260

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D F++   ++ AC        G+  G+   +L     +    +L+ F+  +Y 
Sbjct: 261 STEAIDRDVFAVAAGEDDACGVVFRIREGKLIGSRHTYLSNTGNTPLPNLLASFVEHYYL 320

Query: 296 DKP--CPENILLSEEAEETSLLEISFF----KQYGYKVKITVPKQGEKRKIIEQALINAH 349
           + P   P+ ++L  E  E  L  +       +    +V+ TVP+ GEK  +I   L NA 
Sbjct: 321 ETPDLIPQELMLQAELPEEELEALRQLLSSRQTERRQVRFTVPRIGEKAHLIAMCLDNAK 380

Query: 350 RSHTQKLSTE------ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
               + +  +            L+   +   L  +P+RIE +DNSH  G   V  MV   
Sbjct: 381 HHLHEFMVQKKLRGEIARKSPALESLKQVLHLGKLPERIECFDNSHFQGTDYVSSMVTFV 440

Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463
                K+ YRKF L     +  DD A MR  + RR+   +  E                 
Sbjct: 441 SGKPKKSDYRKFRLKS--FEGSDDYAAMREAVTRRYGGSLAGE--------------LPL 484

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PD+V++DGGKGQ++ A  VL++L ++  + +  +AK  +     E +   + +   L   
Sbjct: 485 PDLVLIDGGKGQVNVAWQVLQELGLD--LPVAGLAKRLE-----EIYVPNEPDPYNLPKT 537

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
            P L  +Q+LRDEAHRFAIT HRK R  +   + L  I G+G      LL+ FG+V+ +S
Sbjct: 538 SPALKLLQQLRDEAHRFAITYHRKLRSDRTIRTELTGIKGVGEKSAEKLLKHFGSVESVS 597

Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           ++S + L+++ G  +K A  IY +F  N    P
Sbjct: 598 KASIDELSAVAG--RKTAESIYRYF--NAGDAP 626


>gi|134300888|ref|YP_001114384.1| excinuclease ABC subunit C [Desulfotomaculum reducens MI-1]
 gi|134053588|gb|ABO51559.1| Excinuclease ABC subunit C [Desulfotomaculum reducens MI-1]
          Length = 588

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 202/595 (33%), Positives = 320/595 (53%), Gaps = 19/595 (3%)

Query: 26  GKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRF 84
           GKA +L+ R++SY  +      ++  M+ +  ++ F VT +E+EAL+LE N+IK  +P++
Sbjct: 2   GKAVSLKNRVRSYFQAGAKQAPKVKAMLGRAVDLDFIVTDSEMEALILENNLIKEHRPKY 61

Query: 85  NILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFL 144
           NILL+DDK++PYI +T + + P +Y  R     +  YFGPF +V AV +T+  L++ F L
Sbjct: 62  NILLKDDKTYPYIKVTVQEEFPRVYLTRRVLKDRARYFGPFTNVGAVNETMRLLKKIFPL 121

Query: 145 RSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIAR 204
           R+C       R RPCL + IKRC GPC   +  + Y E V+E   FL G   +L +++ +
Sbjct: 122 RTCKQRKLSPRDRPCLNYHIKRCLGPCCNLVERQTYRETVNEVVLFLEGRQEDLMKRLRQ 181

Query: 205 NMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFF 261
            M +A  K ++E A   RD+L A+  I      +       D  ++    + +C+   F 
Sbjct: 182 RMEEAAEKLEFEKAAELRDQLLAVEKIVERQKVVSTDLVDQDVIAMARGFDESCLTVFFI 241

Query: 262 HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFF 320
             G+  G   +FL+        +I++ F++QFY      P  +L+SEE  +  LL     
Sbjct: 242 RGGKLIGREHYFLEGTDTLERGEIMTTFIQQFYNQTEFIPAEVLISEEIAKPELLRSWLS 301

Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALP 376
           +  G KV I  PK+G+K K++E A  NA     ++  Q+ +   +    L +      L 
Sbjct: 302 ELRGSKVTIKAPKRGDKHKLVEMAAQNALLSLEQAKLQRQANREAVDGALAELMAALGLE 361

Query: 377 HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436
           + P R+E YD S+I G   V  MVV  E    K+QYR+F +    V+  +D A M   L 
Sbjct: 362 NPPHRMECYDISNIQGTETVSSMVVFEEGRPKKDQYRRFKIRW--VEGPNDFASMHETLT 419

Query: 437 RRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495
           RRFS+  + ++ L+      ++  F   PD++I+DGGKGQLSAA+  + +      I   
Sbjct: 420 RRFSRAKEEQDLLSRGELTPKQAKFTRLPDLIIIDGGKGQLSAARQAMLEQGFA-HIATF 478

Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAY 554
            +AK  +       F   + + + L      L  +QRLRDEAHRFA+T HRK R K+   
Sbjct: 479 GLAKEEEL-----LFAPGRPDPIRLPRESKGLQMLQRLRDEAHRFAVTYHRKLRTKRNLK 533

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           S LDEI+GIG +R+R L +++  ++ I ++S E LA I G++ K A  +YN+F +
Sbjct: 534 SLLDEIDGIGAVRRRELYKAYKNLESIKQASVEELAKIPGMNTKAAEAVYNYFRE 588


>gi|56421210|ref|YP_148528.1| excinuclease ABC subunit C [Geobacillus kaustophilus HTA426]
 gi|81346720|sp|Q5KWH6|UVRC_GEOKA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56381052|dbj|BAD76960.1| excinuclease ABC subunit C [Geobacillus kaustophilus HTA426]
          Length = 590

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/613 (29%), Positives = 300/613 (48%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y M D  G V+YVGKA +L+ R++SY     H  +   ++ +I +  + VT +
Sbjct: 12  LPEQPGCYLMKDKHGTVIYVGKAKSLKARVRSYFTGT-HDGKTQRLVEEIADFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EAL+LE N+IK+  P++N++L+DDKS+P+I IT   K P L   R      G YFGP+
Sbjct: 71  NAEALILEMNLIKKHDPKYNVMLKDDKSYPFIKIT-AEKHPRLLITRKVKKDGGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+       +R CL + + +C  PC   +S E+    V 
Sbjct: 130 PNVQAANETKKLLDRLYPLRKCSTLP----SRACLYYHMGQCLAPCVHPVSDEQNKAMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FL+GG  ++K ++A  M++A    ++E A  +RD++AA+         + N     
Sbjct: 186 QIVRFLNGGYEDVKRELAEKMHEAAETLEFERAKEYRDQIAAIEMTMEKQKMMLNDFIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             +     +              P+ 
Sbjct: 246 DVFGYAYDKGWMCVQVFFLRQGKLIERDVSIFPLYQDPDEEMLTFLGQFYAKAHHLKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           ++L  + +     E+         V +  PK+G+K++++E A  NA              
Sbjct: 306 VVLPSDIDGELARELL-------GVAVVQPKKGKKKELVELASKNAAIALKEKFYFIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   ++  +P    RIE +DNS+I G   V  +VV  +    K +YRK+ + 
Sbjct: 359 EERTIKAVERLGERLGIPAPR-RIEAFDNSNIYGADPVSALVVFLDGKPAKKEYRKYKVK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   +D   MR V+ RR+++++K                   PD++I+DGGKG LSA
Sbjct: 418 T--VAGPNDYETMREVVRRRYTRVLKEG--------------LPLPDLIIIDGGKGHLSA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            + VL+ +L ++  + +  +AK  K     E       + + L+ +    Y +QR++DE 
Sbjct: 462 VRDVLENELGLD--VPLAGLAKDEKHRTS-ELLAGDPPDVVPLDRQSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA+  HRK R+K   +S LD+I G+G  RK+ LL  FG+VK +  ++ E L     I 
Sbjct: 519 HRFAVMFHRKTRQKTMFHSVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIP 577

Query: 597 KKIACKIYNHFHK 609
           + +A KIY   H+
Sbjct: 578 RAVAEKIYEKLHE 590


>gi|289434483|ref|YP_003464355.1| excinuclease ABC, C subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170727|emb|CBH27267.1| excinuclease ABC, C subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|313633645|gb|EFS00403.1| excinuclease ABC subunit C [Listeria seeligeri FSL N1-067]
 gi|313638206|gb|EFS03454.1| excinuclease ABC subunit C [Listeria seeligeri FSL S4-171]
          Length = 603

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/622 (29%), Positives = 300/622 (48%), Gaps = 45/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT   + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKIT-SERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+    +     CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLPNQ----VCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M  A    ++E A   RD++ A+           N     
Sbjct: 187 EIVSFLNGGYKTVKNDLMKKMQLAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +         T+   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKTNHIPPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L ++ +  ++  +          KI VP++G K+ +++ A  NA  +  +K       
Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K                   PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIIPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S + +    G+ 
Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASIQEIKEA-GVP 579

Query: 597 KKIACKIYNH---FHKNTSHTP 615
             +A +++ H   F++  ++T 
Sbjct: 580 LNVAEEVHKHITAFNEKANNTE 601


>gi|254478381|ref|ZP_05091759.1| excinuclease ABC, C subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035639|gb|EEB76335.1| excinuclease ABC, C subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 617

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 194/619 (31%), Positives = 334/619 (53%), Gaps = 18/619 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             + +PE PGVY M D  G ++YVGKA  L+ R++ Y  + +NH  ++  M+S + +  +
Sbjct: 6   KLKLLPEKPGVYLMKDEEGNIIYVGKASVLKNRVRQYFQNTDNHPPKVKVMLSHVEDFEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI IT     P +   R        
Sbjct: 66  IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKITVAEDYPRIMFTRKIDMDGSK 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV +TI  +++ F +R+C  ++ +   + R CL + I  CS PCTG I  E
Sbjct: 126 YFGPYGSAFAVRETIKLVRKMFPIRTCNVNIEKSLGKVRECLYYHIGLCSAPCTGRIEKE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + V +A  FL G    L EK+   M +A  +  +E A   RD++ A+  I       
Sbjct: 186 EYRKLVDQAVMFLEGKREWLVEKLKEEMQKAADELRFEEAARLRDQIFAIEKISEKQKVT 245

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  S+  + ++A I+  F   G+  G   +++K        +I+S F++QFY 
Sbjct: 246 SISEDEQDVISMARSDDIAHIEVFFVREGKLSGREHYYMKNTEGMGREEIISSFIKQFYE 305

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             P  P+ I++  E EE  LLE    ++ G +V ITVP +G+K+++++    NA  +   
Sbjct: 306 SSPSVPKEIIIDVELEEKDLLEDWLSQKRGNRVSITVPLRGKKKELVDMVYQNAVEALKN 365

Query: 355 KLSTEISHQM--ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
           ++           + + +    + +   RIE YD S++ G   VG MVV  +    K++Y
Sbjct: 366 EILAREKILKDPAVLELSNLLGIEYPK-RIEAYDISNVRGEDNVGSMVVFVDGKPKKSEY 424

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471
           RKF +    V+ QDD   MR ++ERRF   ++ ++ +      K++  F   PD++++DG
Sbjct: 425 RKFTIK--YVEGQDDYQSMREMIERRFLHALEEKKQIEEGTLSKEKAKFIEMPDLILVDG 482

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G G ++AA  V++KL +   + +  + K  +         V     + + +       + 
Sbjct: 483 GIGHVNAALEVIEKLGIS--VPVYGMVKDSRHRTRG---LVGVSGEVQMPVTGRAFRLVA 537

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++++EAHRFAIT HR+R+ K   + L  I GIG  R ++L ++FG+++ I ++S E L  
Sbjct: 538 QIQEEAHRFAITFHRERQSKRFKTDLLNIKGIGEKRAKVLYEAFGSIEEIKKASLEELKK 597

Query: 592 IEGISKKIACKIYNHFHKN 610
           ++G++++ A  +Y +FH  
Sbjct: 598 VKGMNERSAKAVYEYFHGE 616


>gi|255321277|ref|ZP_05362442.1| excinuclease ABC subunit C [Acinetobacter radioresistens SK82]
 gi|262379982|ref|ZP_06073137.1| excinuclease ABC, C subunit [Acinetobacter radioresistens SH164]
 gi|255301653|gb|EET80905.1| excinuclease ABC subunit C [Acinetobacter radioresistens SK82]
 gi|262298176|gb|EEY86090.1| excinuclease ABC, C subunit [Acinetobacter radioresistens SH164]
          Length = 599

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 189/610 (30%), Positives = 303/610 (49%), Gaps = 30/610 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            M   PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I+  +T 
Sbjct: 15  NMTTLPGVYRMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIQTLITR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK  +P +NI+LRDDKS+ YI ++     P +   R     Q G +FG
Sbjct: 75  SETEALLLEQNLIKLHRPPYNIMLRDDKSYVYIFVSSDKPYPRVASGRGKGKHQVGKFFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+  L++ F +R C +S F  R RPCL +QIKRCS PC G +S E Y E 
Sbjct: 135 PYPSAYSARDTLVVLEKLFNVRQCENSYFAQRKRPCLQYQIKRCSAPCVGLVSPEDYQED 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V    +FL G    L +++   M +A  K ++E A+ +RDRL  L  +Q           
Sbjct: 195 VKNTIRFLQGDTKELNQELIAKMEEAAEKLEFEKAVFYRDRLGLLREVQAQQAVYKVKGE 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300
            D  ++ +   + C+Q      G+  G  ++F    ++     +  +    ++      P
Sbjct: 255 ADILAIAYQAGVTCVQIMHVRNGRMLGGKSYFPDMQNDDLGQMLSDFMANFYFQVADEVP 314

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ++++     T  LE +   ++G KV+I    +  + +  E A++N   +   +LS  +
Sbjct: 315 AELIVNVALPNTQELEQAIQTEFGKKVQIKHKVRETRAEWQELAVMNVQHAIKGQLSNHL 374

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
                     +   +     RIE +D SH MG + +   VV  + G  K  YR+F +   
Sbjct: 375 ELHERFHQLEQV--MGRPIDRIECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD- 431

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A MR  L RR+ + +                    PD++++DGGKGQL  A 
Sbjct: 432 -ITGGDDYAAMRQALTRRYKKSL-------------------LPDLLLIDGGKGQLHMAM 471

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            V++ L ++    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHRF
Sbjct: 472 EVMQDLGLDAF--MVGVSKGEGRKPGLETLHFTDGRKIQLAEDHKALHLIQQVRDEAHRF 529

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR +R K    S L+ I G+GP R+R LL  FG ++ + ++S + L  + G+   +
Sbjct: 530 AITRHRAKRDKRRAGSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELMVVPGLGPAL 589

Query: 600 ACKIYNHFHK 609
           A  IY   H+
Sbjct: 590 ARTIYKILHE 599


>gi|111024123|ref|YP_707095.1| excinuclease ABC subunit C [Rhodococcus jostii RHA1]
 gi|119367828|sp|Q0S0J9|UVRC_RHOSR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|110823653|gb|ABG98937.1| excinuclease ABC subunit C [Rhodococcus jostii RHA1]
          Length = 727

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 183/674 (27%), Positives = 303/674 (44%), Gaps = 70/674 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY    +    R   M++   ++ +TV 
Sbjct: 13  TIPVDPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVSTLHPRTRQMVTTAGSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDK++P + +T   + P L+ +R        YFG
Sbjct: 73  STEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEYPRLFVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+ ++
Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSAGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAAEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG    L  ++   M +A+ + D+E+A   RD + AL         +  
Sbjct: 193 RKIVEDFCDFLSGRTDRLVRQLEARMQEASEELDFETAARLRDDVGALRRALEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE------------STNAQI 285
                D  +   ++  A +Q      G+ RG   + ++   +            S    +
Sbjct: 253 DGTDADVAAFATDELEAAVQVFHVRGGRVRGQRGWVVEKAGDVIDWASVDSEAGSDLPLL 312

Query: 286 LSYFLRQFYTDKP--------------CPENILLSEEAEETSLLEISFFKQYGYKVKITV 331
           +  FL QFY ++                P  +L+     +   ++       G  V++ V
Sbjct: 313 VEQFLTQFYGEQAALSGATDQEAGTSGVPREVLVPVLPPDAEQVQEWLSGLRGSAVRLRV 372

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDN 387
           P++G+K+ + E    NA  +  Q          S    L+   +   L   P RIE  D 
Sbjct: 373 PQRGDKKALAETVQRNATEALQQHKLRRAGDFTSRSAALQGIQEALDLDSAPLRIECVDI 432

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN- 445
           SH+ G   V  +VV  +    K+ YR + +       + DD A +  V  RRF +  ++ 
Sbjct: 433 SHVQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGRSDDVASIAEVTRRRFLRHNRDV 492

Query: 446 ------------------------EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
                                    E        +   F   P++ ++DGG  Q++AA  
Sbjct: 493 GVLRAEAAGADADQVSGGDGGDLAPEAAIDPQTGRPRRFAYPPNLFVVDGGAPQVAAASA 552

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           VL +L + + + +I +AK  +     E +   + + ++L      LY +QR+RDEAHRFA
Sbjct: 553 VLDELGITD-VAVIGLAKRLE-----EVWVPGEEDPVILPRTSESLYLLQRVRDEAHRFA 606

Query: 542 ITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR +R  +   S LD + G+G  R++ L+  FG+V  + ++S E + ++ GI    A
Sbjct: 607 ITFHRSKRSRRMTASALDSVRGLGETRRKALVTHFGSVARLKQASVEEITAVPGIGTATA 666

Query: 601 CKIYNHFHKNTSHT 614
             +           
Sbjct: 667 KAVLTALGAEEPSA 680


>gi|262276854|ref|ZP_06054647.1| excinuclease ABC subunit C [alpha proteobacterium HIMB114]
 gi|262223957|gb|EEY74416.1| excinuclease ABC subunit C [alpha proteobacterium HIMB114]
          Length = 612

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 245/609 (40%), Positives = 365/609 (59%), Gaps = 22/609 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVYQ+ D   +++YVGKA NL  R+ +Y  S+    R   MI+  N I    T  E 
Sbjct: 20  NSPGVYQVFDEKNKIIYVGKAKNLPNRLSNYSSSSTQPIRTERMIASTNRIDTISTLNES 79

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EALLLEAN+IK+ KPR+N+LL+DDKSFPYI I   H  P + K R     +  YFGPFAS
Sbjct: 80  EALLLEANLIKKNKPRYNVLLKDDKSFPYIQIRSSHDYPQITKFRGKHNDKDIYFGPFAS 139

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
           + +   TI  LQ+ F +R C D+ F+ R+RPC+L+QIKRCSGPCTGEI+  +Y + V E 
Sbjct: 140 IASANWTIKMLQKVFQIRVCDDNTFKGRSRPCILYQIKRCSGPCTGEITKSEYSKTVDEC 199

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---MDC 244
             FL+G + ++++K+++ M + + + ++E A I RDR+ +L++IQ+  +   N     D 
Sbjct: 200 SSFLNGKSRDIQKKMSQEMEKESDRLNFEKAAILRDRIKSLTYIQSSQNIQKNNLKDADL 259

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
              +  +N+ C+   F+   QN G+  F+ K D E ++  IL  FL QFY +K  P  ++
Sbjct: 260 IVSHRKENITCVVIFFYRSKQNWGSQYFYPKHDHEDSDEHILKSFLTQFYENKEPPSELV 319

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           L+   E   L++ +F K+Y  K+ I   K   K  +++ A+ NA      K+ ++  +  
Sbjct: 320 LNLTPENHELIKSAFEKKYNKKILI---KISPKNSMVKNAVKNAQEQLQIKILSQEKNND 376

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
           +L    +KF L   P  IE+YDNSH  G S +G ++  G++GF+KN+YRKFN+    +K+
Sbjct: 377 LLISMGEKFKLGFTPSLIEVYDNSHNQGDSNIGALIAFGKDGFIKNRYRKFNIKNTKIKS 436

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD  MM  V++RRFS++                +  + PD++++DGGKGQ S  +  L 
Sbjct: 437 NDDYGMMTEVIQRRFSKV-------------DSLTDENVPDLLLIDGGKGQYSVVRNKLN 483

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
            L     + II+I+KG +R+ G EKF  + G  + L+  DP+L+  QR+RDEAHRFAITT
Sbjct: 484 DLGFHG-LKIIAISKGKERNKGNEKFISEDG-VIELDKNDPVLFLTQRIRDEAHRFAITT 541

Query: 545 HRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HRK++ K    SPLDEI+GIG  RK+ LL  FG+ K I  +S + + SI+GI+   A K+
Sbjct: 542 HRKKKTKQMFKSPLDEIDGIGSKRKKALLSHFGSAKAIEGASLDDIKSIDGINDSSAEKV 601

Query: 604 YNHFHKNTS 612
           YN FHK  +
Sbjct: 602 YNFFHKKKN 610


>gi|326203844|ref|ZP_08193706.1| excinuclease ABC, C subunit [Clostridium papyrosolvens DSM 2782]
 gi|325985942|gb|EGD46776.1| excinuclease ABC, C subunit [Clostridium papyrosolvens DSM 2782]
          Length = 613

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 186/619 (30%), Positives = 315/619 (50%), Gaps = 24/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             +++P+  GVY M D  G V+YVGKA  L+ R++ Y   S NH  ++  M+S+I+   +
Sbjct: 7   ELKKLPDKSGVYIMKDANGVVIYVGKAVVLKNRVRQYFQQSANHPPKVQAMVSKISEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +EVEAL+LE N+IK+ KP++NILL+DDK +PYI +T   + P + K R        
Sbjct: 67  IVVDSEVEALMLECNLIKKYKPKYNILLKDDKHYPYIKVTLNEEYPRILKTRRVDKDGAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP++S  AV  TI++L++ F L++C  ++ R   +TRPCL + +K+C  PC G ++ +
Sbjct: 127 YFGPYSSGFAVNDTIDTLKKLFPLKTCNKNLPRDIGKTRPCLNYHMKQCLAPCQGGVNRD 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y + + +  +FL G    +   I   M  A  + D+E A + R++++++  +       
Sbjct: 187 EYRDMMKKICRFLGGQYDEIINDIRMQMESAAEQLDFEKAALLRNKISSIKQLSESQKVL 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D      +    C+Q  F   G+  G   F  + ++       LS F++QFY 
Sbjct: 247 STDLEDRDIIGYSADSTDLCVQVFFVRNGRVIGREHFMFEGEANEDKGYSLSTFIKQFYN 306

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             +  P  I+L  E +++  +     ++ G+KV + VP++G+  K++     NA  +   
Sbjct: 307 TVQFVPSEIVLQSEVDDSETIAKWLTEKRGFKVALRVPQRGDLVKLVHMVSENAEITLKL 366

Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
               +          +    K   L   P RIE YD S+      V  MVV       + 
Sbjct: 367 HRERQSREGIVPAEGMSQLVKLLGLEEAPARIESYDISNTGSTEIVASMVVFENGRPARQ 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YRKF +    ++ Q+D   M+  L RR ++  + +E        +   F   PD++++D
Sbjct: 427 EYRKFKMKS--IEQQNDYGSMQETLFRRLNRAKREKEE-----AAENAKFSKLPDLILVD 479

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG   ++AA+ V+++L    +I    +AK  +         V  G    L+   P+L  I
Sbjct: 480 GGSNHVNAAKQVIEELGYSFKI--AGMAKDDRHRTKS---LVYMGNEYDLSGNMPLLRLI 534

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
             ++DE HR A+  +RK R K+   S LDE+ GIG  RK+ L++ F +V  I ++    L
Sbjct: 535 TEIQDETHRVAVEYNRKLREKRYVKSELDEVEGIGQTRKKALIRHFKSVAAIKKADVAQL 594

Query: 590 ASIEGISKKIACKIYNHFH 608
             ++GIS+KIA KIY +F+
Sbjct: 595 QEVDGISEKIAKKIYEYFN 613


>gi|20808370|ref|NP_623541.1| excinuclease ABC subunit C [Thermoanaerobacter tengcongensis MB4]
 gi|32130303|sp|Q8R8M9|UVRC_THETN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|20516981|gb|AAM25145.1| Nuclease subunit of the excinuclease complex [Thermoanaerobacter
           tengcongensis MB4]
          Length = 617

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 194/619 (31%), Positives = 334/619 (53%), Gaps = 18/619 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             + +PE PGVY M D  G ++YVGKA  L+ R++ Y  + +NH  ++  M+S + +  +
Sbjct: 6   KLKLLPEKPGVYLMKDEEGNIIYVGKASVLKNRVRQYFQNTDNHPPKVKVMLSHVEDFEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ KP++N+LL+DDK++PYI IT     P +   R        
Sbjct: 66  IVTDTELEALMLECNLIKKYKPKYNVLLKDDKNYPYIKITVAEDYPRIMFTRKIDMDGSK 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV +TI  +++ F +R+C  ++ +   + R CL + I  CS PCTG I  E
Sbjct: 126 YFGPYGSAFAVRETIKLVRKMFPIRTCNVNIEKSLGKVRECLYYHIGLCSAPCTGRIEKE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + V +A  FL G    L EK+   M +A  +  +E A   RD++ A+  I       
Sbjct: 186 EYRKLVDQAVMFLEGKREWLVEKLKEEMQKAADELRFEEAARLRDQIFAIEKISEKQKVT 245

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D  S+  + ++A I+  F   G+  G   +++K        +I+S F++QFY 
Sbjct: 246 SINEDEQDVISMARSDDIAHIEVFFVREGKLSGREHYYMKNTEGMGREEIISSFIKQFYE 305

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             P  P+ I++  E EE  LLE    ++ G +V ITVP +G+K+++++    NA  +   
Sbjct: 306 SSPSVPKEIIIDVELEEKDLLEDWLSQKRGNRVSITVPLRGKKKELVDMVYQNAVEALKN 365

Query: 355 KLSTEISHQM--ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
           ++           + + +    + +   RIE YD S++ G   VG MVV  +    K++Y
Sbjct: 366 EILAREKILKDPAVLELSNLLGIEYPK-RIEAYDISNVRGEDNVGSMVVFVDGKPKKSEY 424

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILDG 471
           RKF +    V+ QDD   MR ++ERRF   ++ ++ +      K++  F   PD++++DG
Sbjct: 425 RKFTIK--YVEGQDDYQSMREMIERRFLHALEEKKQIEEGTLSKEKAKFIEMPDLILVDG 482

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G G ++AA  V++KL +   + +  + K  +         V     + + +       + 
Sbjct: 483 GIGHVNAALEVIEKLGIS--VPVYGMVKDSRHRTRG---LVGVSGEVQMPVTGRAFRLVA 537

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++++EAHRFAIT HR+R+ K   + L  I GIG  R ++L ++FG+++ I ++S E L  
Sbjct: 538 QIQEEAHRFAITFHRERQSKRFKTDLLNIKGIGEKRAKVLYEAFGSIEEIKKASLEELKK 597

Query: 592 IEGISKKIACKIYNHFHKN 610
           ++G++++ A  +Y +FH  
Sbjct: 598 VKGMNERSAKAVYEYFHGE 616


>gi|261418309|ref|YP_003251991.1| excinuclease ABC subunit C [Geobacillus sp. Y412MC61]
 gi|297529163|ref|YP_003670438.1| excinuclease ABC, C subunit [Geobacillus sp. C56-T3]
 gi|319767731|ref|YP_004133232.1| excinuclease ABC, C subunit [Geobacillus sp. Y412MC52]
 gi|261374766|gb|ACX77509.1| excinuclease ABC, C subunit [Geobacillus sp. Y412MC61]
 gi|297252415|gb|ADI25861.1| excinuclease ABC, C subunit [Geobacillus sp. C56-T3]
 gi|317112597|gb|ADU95089.1| excinuclease ABC, C subunit [Geobacillus sp. Y412MC52]
          Length = 590

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/613 (29%), Positives = 300/613 (48%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y M D  G V+YVGKA +L+ R++SY     H  +   ++ +I +  + VT +
Sbjct: 12  LPEQPGCYLMKDRHGTVIYVGKAKSLKARVRSYFTGT-HDGKTQRLVEEIADFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EAL+LE N+IK+  P++N++L+DDKS+P+I IT   K P L   R      G YFGP+
Sbjct: 71  NAEALILEMNLIKKHDPKYNVMLKDDKSYPFIKIT-AEKHPRLLITRKVKKDGGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+       +R CL + + +C  PC   +S E+    V 
Sbjct: 130 PNVQAANETKKLLDRLYPLRKCSTLP----SRACLYYHMGQCLAPCVHPVSDEQNKAMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FL+GG  ++K ++A  M++A    ++E A  +RD++AA+         + N     
Sbjct: 186 QIVRFLNGGYEDVKRELAEKMHEAAEALEFERAKEYRDQIAAIEMTMEKQKMMLNDFIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             +     +              P+ 
Sbjct: 246 DVFGYAYDKGWMCVQVFFLRQGKLIERDVSIFPLYQDPDEEMLTFLGQFYAKAHHLKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           ++L  + +     E+         V +  PK+G+K++++E A  NA              
Sbjct: 306 VVLPSDIDGELARELL-------GVAVVQPKKGKKKELVELASKNAAIALKEKFYFIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   ++  +P    RIE +DNS+I G   V  +VV  +    K +YRK+ + 
Sbjct: 359 EERTIKAVERLGERLGIPAPR-RIEAFDNSNIYGADPVSALVVFLDGKPAKKEYRKYKVK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   +D   MR V+ RR+++++K                   PD++I+DGGKG LSA
Sbjct: 418 T--VAGPNDYETMREVVRRRYTRVLKEG--------------LPLPDLIIIDGGKGHLSA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            + VL+ +L ++  + +  +AK  K     E       + + L+ +    Y +QR++DE 
Sbjct: 462 VRDVLENELGLD--VPLAGLAKDEKHRTS-ELLAGDPPDVVPLDRQSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA+  HRK R+K   +S LD+I G+G  RK+ LL  FG+VK +  ++ E L     I 
Sbjct: 519 HRFAVMFHRKTRQKTMFHSVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIP 577

Query: 597 KKIACKIYNHFHK 609
           + +A KIY   H+
Sbjct: 578 RAVAEKIYEKLHE 590


>gi|116670629|ref|YP_831562.1| excinuclease ABC subunit C [Arthrobacter sp. FB24]
 gi|189038021|sp|A0JWP2|UVRC_ARTS2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|116610738|gb|ABK03462.1| Excinuclease ABC subunit C [Arthrobacter sp. FB24]
          Length = 669

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 193/652 (29%), Positives = 319/652 (48%), Gaps = 48/652 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + ++P  PGVY+  D  GRV+YVGKA +L+ R+ SY  +      +   M+   +++ +
Sbjct: 10  QTGEIPTNPGVYRFRDPHGRVIYVGKAKSLRSRLNSYFANPGGLLPKTYAMVHAASSVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  +E+E+L LE   IK  KPRFN++ RDDK++PY+ +T   K P +   R        
Sbjct: 70  TVVASELESLQLEYTWIKEFKPRFNVVFRDDKTYPYLAVTMGEKFPRVQVLRGERRKGTR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T+++L R F +RSC+  V +      RPCLL  I +C+ PC G ++ 
Sbjct: 130 YFGPYT-AGAIRETMDTLLRVFPVRSCSPGVLKRAQASGRPCLLGYIDKCAAPCVGRVTP 188

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++     +   F+ G       ++ ++M  A  + DYE A   RD + AL  +   N  
Sbjct: 189 EEHRALAEDFCSFMGGEAKRFIGRLEKDMAAAVAELDYERAARVRDDIIALRKVFERNAV 248

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D F+L+ ++  A +Q      G+ RG   + ++   + T   ++ + L+Q Y
Sbjct: 249 VLAEDTDADVFALHEDELEAAVQVFHVRGGRVRGQRGWVVEKVEDFTTPDLVEHLLQQVY 308

Query: 295 TDK-----PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
            ++       P  +L+ EE    + L        G KV I VP++G+K  ++     NA 
Sbjct: 309 GEEGETQGRLPREVLVPEEPSNAAELAQWLAGLRGAKVDIRVPRRGDKAALMSTVRENAE 368

Query: 350 RSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
            +     S       +  + L++  +   LP    RIE +D SH+ G + V  MVVV + 
Sbjct: 369 HALKLHKSRRAGDLTNRSLALQELQEALDLPVALLRIECFDISHVQGTNVVASMVVVEDG 428

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL---------------- 449
              K+ YRKF++        DD A M  VL RRF   ++ +                   
Sbjct: 429 LPKKSDYRKFSITGA--AAVDDTAAMHDVLTRRFRNYLQEKAAQAEAAQLPGHQAALEAM 486

Query: 450 ------NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503
                 +         F   P++V++DGGK Q++AA   L +L +++ + ++ +AK  + 
Sbjct: 487 AVASMQDTTTPAPRAKFAYPPNLVVVDGGKPQVNAAARALAELGIDD-VYVVGLAKRLE- 544

Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEING 562
               E +       ++L      LY +QR+RDEAHRFAIT HR++R KA   S LD + G
Sbjct: 545 ----EVWLPDSDFPVILPRTSEGLYLLQRIRDEAHRFAITFHRQKRGKAMTVSALDSVPG 600

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G  +++ LL  FG+VK I  +S   LA+ +GI   +A  I +HF    + +
Sbjct: 601 LGEAKRKALLAQFGSVKSIRTASAAELATAKGIGPSLADAIVSHFSNGAAAS 652


>gi|323705114|ref|ZP_08116690.1| excinuclease ABC, C subunit [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535540|gb|EGB25315.1| excinuclease ABC, C subunit [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 618

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 194/619 (31%), Positives = 317/619 (51%), Gaps = 18/619 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             + +P+ PGVY M D++G+++YVGKA  L+ R++ Y  +  N   ++  M+  + +  +
Sbjct: 7   KLKLLPDKPGVYIMKDLSGKIIYVGKAVILKNRVRQYFQNQANQLPKVRTMVKHVADFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE+EAL+LE N+IK+ KP++NILL+DDK++PYI IT     P +   R        
Sbjct: 67  IVTDTELEALILECNLIKKHKPKYNILLKDDKNYPYIKITVNEDYPRIVFTRKVDMDGAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP++S  AV +TI  L+  F LRSC  ++ R   + R CL + I  CS PCTG I+ E
Sbjct: 127 YFGPYSSAFAVRETIKLLRHMFPLRSCNRNIERDMGKGRECLYYHIGLCSAPCTGRITKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y +   +   FL G    L +K+   M +A    ++E A   RD++  +          
Sbjct: 187 EYKKLTDDVLMFLEGKRDVLLKKLKEEMEKAAENMEFEKAAKLRDQIYGIEKTSEKQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  S+  +   ACIQ  F   G+  G   +F+K   +   + I++ F++QFY 
Sbjct: 247 SASLEDQDVISMARSAEDACIQVFFIRDGKVSGREHYFMKNTDDMDRSDIMASFIKQFYD 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--H 352
             P  P+ I+L  + EE  +L     ++ G KV I VP +G+K+++++    NA  +  +
Sbjct: 307 GAPYVPKEIILDVDMEEKDVLVEWLSEKRGNKVSIVVPSRGKKKELVDMVYENALEALKN 366

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              L  E      + + +    + +   RIE +D S+I G   V  MVV  +    K+ Y
Sbjct: 367 DVSLKMERHKNDSVSELSNLVGIDYAE-RIEAFDISNIRGTDNVASMVVFVDGKPHKSSY 425

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY-SFPSWPDVVILDG 471
           RKF +    V+ QDD   MR  + RR S  +K ++ +     K++   F   PD++++DG
Sbjct: 426 RKFIIKT--VEGQDDYGSMREAISRRISHGLKEQKQIETGELKEDKAKFHIMPDLILVDG 483

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G G +      L++LNVE  I +  + K  K            GE + + M       + 
Sbjct: 484 GLGHVKTVIEALQQLNVE--IPVYGMVKDSKHRTRG--LVSPDGE-IDMPMTGRAFRLVA 538

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            +++EAHRFAIT H+  + K   S L  I GIG  R + L  +F T+  I  ++ + L  
Sbjct: 539 EIQNEAHRFAITFHKDTKSKKLRSDLLNIPGIGEKRMKALYNAFKTIDGIKNATVDELKK 598

Query: 592 IEGISKKIACKIYNHFHKN 610
           +EG+++K A  +Y++F  +
Sbjct: 599 VEGMNEKAANAVYDYFRSH 617


>gi|326316507|ref|YP_004234179.1| excinuclease ABC subunit C [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323373343|gb|ADX45612.1| excinuclease ABC, C subunit [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 670

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 213/663 (32%), Positives = 316/663 (47%), Gaps = 66/663 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+  D  G +LYVGKA NL+KR+ SY    +   RI HM+ +I  +  TV  
Sbjct: 15  SLPPLPGVYRYFDAQGGLLYVGKARNLKKRVSSYFTKTHGGTRIGHMVGKIARLETTVVR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRD 113
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ IT              + P +  +R 
Sbjct: 75  SEAEALLLENNLIKSLNPRYNILFRDDKSYPYLKITGVAARDGTGEPPGQRFPRVAYYRG 134

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
           S   +  YFGP+    AV++TI  LQ+ F LR+C D+VF +RTRPCLL+QIKRCSGPC  
Sbjct: 135 SVDKRHRYFGPYPGAWAVKETILLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSGPCVD 194

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS E Y   V  A   L G    L E +   M   + + ++E A   R+++ ALS + +
Sbjct: 195 LISPEAYALDVRNADAMLRGETKELLEALEARMMAHSERLEFEQAADIRNQITALSRVLH 254

Query: 234 HN---DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE----------- 279
                      +D  ++      AC+       G++ G   +F     +           
Sbjct: 255 QQAIETVSDKDVDILAVKVLGGRACVNLAMVRGGRHLGDRPYFPVHVEDAAAVYQLEEGA 314

Query: 280 ----------------------------STNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
                                       S   Q+L  F+ Q Y   P P  ++ SE  + 
Sbjct: 315 DGSDGPDGAAETAGPAEASPAAPRTPQRSLEVQVLEAFIAQHYIGVPVPPVLVTSEPVDR 374

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
             L  +    Q G +V      + ++R  ++ A  NA     + LS E S Q   +   +
Sbjct: 375 ALLEAL--SLQAGIRVGAVHQPREQRRAWLDMAQKNADIQLARLLSEEGSQQARTRALAE 432

Query: 372 KFALPHIPKR---IEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
              LP        IE +D SH  G +     VV   +    ++YR++      +   DD 
Sbjct: 433 ALDLPMDDLESLTIECFDISHTAGEATQASCVVFHHHRMQSSEYRRY--KIEGITGGDDY 490

Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488
           A MR VL RR+S++++ +            +    PD+V++DGGKGQ+S A+ V  +L +
Sbjct: 491 AAMRQVLTRRYSKVVEAQREAGGAEPAPGQA--RLPDLVLIDGGKGQVSMAREVFTELGL 548

Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRK 547
           E    I+ + KG  R  G+E+     G   + L      L  + ++RDEAHRFAIT  R 
Sbjct: 549 ELS-RIVGVEKGEGRKVGLEELVFADGREKIYLGRDSAALMLVAQIRDEAHRFAITGMRA 607

Query: 548 RRKKAAYS--PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            R K       L+EI G+GP ++  LLQ FG V+ ++ +S E LA+++GIS ++A +IY 
Sbjct: 608 ARAKVRVGGGQLEEIPGVGPKKRARLLQRFGGVRGVAAASVEDLATVDGISLELAQEIYR 667

Query: 606 HFH 608
              
Sbjct: 668 ALR 670


>gi|296140249|ref|YP_003647492.1| excinuclease ABC, C subunit [Tsukamurella paurometabola DSM 20162]
 gi|296028383|gb|ADG79153.1| excinuclease ABC, C subunit [Tsukamurella paurometabola DSM 20162]
          Length = 675

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 185/664 (27%), Positives = 301/664 (45%), Gaps = 66/664 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY         R   M++   ++ +TV 
Sbjct: 13  TIPTQPGVYKFRDKHGRVIYVGKAKSLRSRLNSYFADVYGLHPRTYQMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   P+FN+  RDDK++P + +T   + P LY +R        YFG
Sbjct: 73  NTEVEALQLEYNWIKEFDPQFNVRYRDDKTYPMLAVTLNEEYPRLYVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +++ ++
Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSAGVFKRHNQMGRPCLLGYIDKCSAPCIGRVTAAEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FL+G   NL +++  +M  A+ + D+E A   RD ++AL         +  
Sbjct: 193 RQIVDDFCDFLAGKTDNLIKQLENDMLAASEELDFERAARLRDDVSALRKAVEKQAVVLG 252

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI---LSYFLRQFY 294
                D  +   ++  A +Q      G+ RG   + ++   ++   +    +  FL QFY
Sbjct: 253 DGTDADVIAFSADELEAAVQIFHVRGGRVRGQRGWVVEKPGDAEQNEHAELVEQFLTQFY 312

Query: 295 TD-------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            +              P P  +L+    ++   L+    +  G +V + +P++G+KR ++
Sbjct: 313 GEEAERAKQSGDTAANPVPREVLVPVLPDDADELQDWLSELRGSRVSLRIPQRGDKRTLM 372

Query: 342 EQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397
           E    NA  +  Q          +    L+       L   P RIE  D SHI G   V 
Sbjct: 373 ETVERNAAEALHQHKLKRSGDLTARSAALQGLQGALDLDEAPLRIECVDISHIQGSDVVA 432

Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNE---------- 446
            +VV  +    K+ YR + +         DD A +  V  RRF +   +           
Sbjct: 433 SLVVFEDGLAKKSDYRHYAIKEAAGDGHSDDVASIAEVTRRRFLRHRADAHQEAGDSGAG 492

Query: 447 ---------------------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
                                E        +   F   P++ ++DGG  Q +AAQ VL  
Sbjct: 493 VAASDNGGDLAASDNGGDLAPEAAIDPQTGRPRRFAYPPNLYVVDGGPPQAAAAQAVLDD 552

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L V + + ++ +AK  +     E +   + + ++L      L+ +QR+RDEAHRFAI  H
Sbjct: 553 LGVTD-VAVVGLAKRLE-----EVWVPGEDDPVILPRSSDALFLLQRVRDEAHRFAIGFH 606

Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R K    S LD I G+G  RK  L++ FG+V  +  +S E +  + GI    A  + 
Sbjct: 607 RTKRSKRMTSSALDSIPGLGDTRKAALIRHFGSVAKLRAASLEEIVEVPGIGLTTARTVL 666

Query: 605 NHFH 608
           +   
Sbjct: 667 DALR 670


>gi|296876338|ref|ZP_06900390.1| excision endonuclease subunit UvrC [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432628|gb|EFH18423.1| excision endonuclease subunit UvrC [Streptococcus parasanguinis
           ATCC 15912]
          Length = 611

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 170/621 (27%), Positives = 294/621 (47%), Gaps = 43/621 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + + +C            + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHLGQCMAHTVCHKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 GMAQEVSDFLKGQDDKIIDELRLKMTTAAQNMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 IPNEILIPQDIDEEAVKALVDTKVLK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  K   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSMEKTQGAIENLGKLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+S+++++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYSRVMRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAA-QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           Q++ A + + ++L ++  I I  + K  K     E  F    + + L+      + +QR+
Sbjct: 458 QVNIAKRVIQEELGLD--IPIAGLQKNDKHQT-HELLFGDPLQVIELSRTSQEFFLLQRI 514

Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           +DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I  ++ + + ++
Sbjct: 515 QDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQLLMKHFKSLTKIKEATVDEIVTV 574

Query: 593 EGISKKIACKIYNHFHKNTSH 613
            GI + +A  +     +    
Sbjct: 575 -GIPRAVAEAVQAKLQQGKQE 594


>gi|293610110|ref|ZP_06692411.1| UvrABC system protein C [Acinetobacter sp. SH024]
 gi|292827342|gb|EFF85706.1| UvrABC system protein C [Acinetobacter sp. SH024]
          Length = 599

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 200/611 (32%), Positives = 313/611 (51%), Gaps = 32/611 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            M + PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   VT 
Sbjct: 15  NMTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++     P L   R     Q G +FG
Sbjct: 75  SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRLASGRGKGKHQIGKFFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G IS E Y E 
Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLISPEDYKED 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V+ + +FL G    L +++   M QA  + ++E A+ +RDRL+ L  +Q           
Sbjct: 195 VNNSIRFLQGDTKELNQELIAKMEQAAAELEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299
            D  ++ +   + C+Q  +   G+  G  ++F          Q+LS F+  FY       
Sbjct: 255 ADILAIAYQAGVTCVQIMYVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 313

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++++    +   LE +  +Q+G KV+I    +  + + +E A +N   +   +LS  
Sbjct: 314 PNELIVNIALPDCKELEEALAQQFGKKVQIKSNVRETRAEWLELAEMNVQHAIKGQLSNH 373

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
           +          +    P     IE +D SH MG + +   VV  + G  K  YR+F +  
Sbjct: 374 LELNERFHQLEQVVGRPVDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 431

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR  L RR+ + I                    PD++++DGGKGQL  A
Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAI-------------------LPDLLLIDGGKGQLHMA 470

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             V+++L ++    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHR
Sbjct: 471 MEVMQELGLDAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDHKALHLIQQVRDEAHR 528

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR +R K+ + S L+ I G+GP R+R LL  FG ++ + ++S + L  + G  + 
Sbjct: 529 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTLVPGFGEM 588

Query: 599 IACKIYNHFHK 609
           +A  IY   H+
Sbjct: 589 MARTIYKILHE 599


>gi|332076451|gb|EGI86914.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA41301]
          Length = 615

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 168/620 (27%), Positives = 292/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +   + 
Sbjct: 575 GVPRAVAEAVQRKLNPQETE 594


>gi|325124281|gb|ADY83804.1| excinuclease ABC subunit C [Acinetobacter calcoaceticus PHEA-2]
          Length = 599

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 200/611 (32%), Positives = 313/611 (51%), Gaps = 32/611 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            M + PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   VT 
Sbjct: 15  NMTQLPGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++     P L   R     Q G +FG
Sbjct: 75  SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRLASGRGKGKHQIGKFFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G IS E Y E 
Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLISPEDYKED 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V+ + +FL G    L +++   M QA  + ++E A+ +RDRL+ L  +Q           
Sbjct: 195 VNNSIRFLQGDTKELNQELITKMEQAAAELEFEKAVFYRDRLSLLREVQAQQAVFKVKGE 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299
            D  ++ +   + C+Q  +   G+  G  ++F          Q+LS F+  FY       
Sbjct: 255 ADILAIAYQAGVTCVQIMYVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEV 313

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++++    +   LE +  +Q+G KV+I    +  + + +E A +N   +   +LS  
Sbjct: 314 PNELIVNIALPDCKELEEALAQQFGKKVQIKSNVRETRAEWLELAEMNVQHAIKGQLSNH 373

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
           +          +    P     IE +D SH MG + +   VV  + G  K  YR+F +  
Sbjct: 374 LELNERFHQLEQVVGRPVDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD 431

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR  L RR+ + I                    PD++++DGGKGQL  A
Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAI-------------------LPDLLLIDGGKGQLHMA 470

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             V+++L ++    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHR
Sbjct: 471 MEVMQELGLDAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDHKALHLIQQVRDEAHR 528

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR +R K+ + S L+ I G+GP R+R LL  FG ++ + ++S + L  + G  + 
Sbjct: 529 FAITKHRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTLVPGFGEM 588

Query: 599 IACKIYNHFHK 609
           +A  IY   H+
Sbjct: 589 MARTIYKILHE 599


>gi|90413709|ref|ZP_01221698.1| excinuclease ABC subunit C [Photobacterium profundum 3TCK]
 gi|90325330|gb|EAS41824.1| excinuclease ABC subunit C [Photobacterium profundum 3TCK]
          Length = 589

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 207/606 (34%), Positives = 326/606 (53%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  +N    +   ++  I  +  TVT TE EAL+LE 
Sbjct: 1   MYDAVGEVIYVGKAKDLKKRLSSYFRTNVAGEKTRALVKNICKVDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK   P++N+LLRDDKS+PYI +++ H  P L  HR +   +G YFGP+    AV ++
Sbjct: 61  NYIKLYLPKYNVLLRDDKSYPYIFLSNHH-HPRLSIHRGTKKRKGEYFGPYPDAGAVRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C DSV+ +R+RPCL++QI RC  PC  + I+ + Y + V  A+ FL G
Sbjct: 120 LHLMQKLFPIRQCEDSVYANRSRPCLMYQIGRCLAPCVKDLITEKDYEDQVSFARLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250
            +  +   +   M QA+   ++E A   RD++ AL  IQ      ++  D      + H 
Sbjct: 180 KDRQVIASLVEKMEQASQSLNFEQAATFRDQIQALRRIQEQQFVSHDSEDDLDVVGIAHQ 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306
             +ACI   +   G+  G+ ++F K  S++   ++LS F+ QFY ++      P  I+L 
Sbjct: 240 NGMACIHALYIRQGKILGSRSYFPKMPSDAELTEVLSSFVTQFYLNQAEGRVIPSVIILG 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           E   ++  ++  +     G K+++ V  +G + + ++ A  NA  + T KLS +++    
Sbjct: 300 ENLGDDAGVITETLSDIAGRKIELKVSPRGNRARYLKLAQTNAMTALTSKLSHKMTIHER 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
             +  K   L  I  R+E +D SH MG   V   VV  + G  K  YR++N+    +   
Sbjct: 360 FSELRKALNLETIT-RMECFDISHTMGEKTVASCVVFNQEGPFKQDYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+ + ++ E+                PD++ +DGG+GQLS A  V+K 
Sbjct: 417 DDYAAMGQVLERRYGKQMEPEK---------------IPDIIFIDGGRGQLSRAYNVVKP 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
                  +  +I IAKG  R AG+E      G+   L    P L+ IQ +RDE+H  AI+
Sbjct: 462 FMDEWPKQPLLIGIAKGVTRKAGLETLIFITGDEFSLPSDSPALHLIQHIRDESHNHAIS 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+++ GIGP R++ LL+  G +  + R+S E +A + GISK +A K
Sbjct: 522 GHRAQRAKVRKRSALEDVEGIGPKRRQALLKFMGGLHELKRASREEIAKVPGISKALAEK 581

Query: 603 IYNHFH 608
           IY+   
Sbjct: 582 IYDALQ 587


>gi|303231830|ref|ZP_07318544.1| excinuclease ABC, C subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302513508|gb|EFL55536.1| excinuclease ABC, C subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 612

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 187/615 (30%), Positives = 310/615 (50%), Gaps = 34/615 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
               +P  PGVY   D   R++YVGKA NL+ R++SY+ ++ +   ++T M+ +  ++  
Sbjct: 9   KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEI 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EAL+LE  +IK  KP++NI L+DDK++PY+ I+ +   P +Y  R        
Sbjct: 69  IQTKTEMEALILENTLIKEHKPKYNISLKDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF  V AV   +  +++ F LR+C         RPCL + +  C  PC  +IS   Y
Sbjct: 129 YFGPFTDVTAVHVVLKLIRQYFPLRTCKSMKVE---RPCLQYHMHYCEAPCFHKISVPDY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +++ E      G    L ++I   M  A  +  +E A  +RD+L ++  IQ     +  
Sbjct: 186 RQYIDEIIALFEGKPIPLLKEIKEKMEIAAEELRFEDAARYRDQLTSIEKIQEKQRMVTQ 245

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D   +  +  LAC+Q  F   G+  G   +F++ + +S    +  +  + +     
Sbjct: 246 RGDLDVLGIAVDGQLACVQLLFIRGGRLLGRENYFVQNEGDSEETIMTDFIKQYYGDTTF 305

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354
            P+ +LL  E+ E  L +  F    G +V + VP++G K  +I+ A  NA         Q
Sbjct: 306 IPKELLLPMESSEQHLFKDWFSDMKGQQVDVLVPQRGYKMDMIKMAHENAETFLEERRRQ 365

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +K   +   LP +P+R+E +D SH  G   V  MVV       K +YR+
Sbjct: 366 WQYQIDKSGGAVKKLAEVLDLPRLPERMECFDISHTQGSETVASMVVFEGGKPAKKEYRR 425

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F L        DD   M  ++ERR+                   +    PD++I+DGGKG
Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 468

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QL+A+  +++ + V + + +IS+AK  +     E F   + ++++L+   P L  +Q++R
Sbjct: 469 QLNASIPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSDSIILSHHSPELQLLQQIR 522

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HRK R K+   S LD I+GIGP R++ L   F +++ + ++S + LA ++
Sbjct: 523 DEAHRFAITYHRKLRGKRNLESVLDHIDGIGPKRRKALWAHFNSLEAMKKASIDELAKVD 582

Query: 594 GISKKIACKIYNHFH 608
            ++ K A  +YN F 
Sbjct: 583 SMNYKTAEILYNFFR 597


>gi|253575343|ref|ZP_04852681.1| excinuclease ABC, C subunit [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845340|gb|EES73350.1| excinuclease ABC, C subunit [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 626

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 189/619 (30%), Positives = 296/619 (47%), Gaps = 40/619 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +  G+++YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 32  LPDSPGCYLMKNKDGKIIYVGKAKVLKNRVRSYFTGS-HNGKTQLLVSEIRDFEYIVTAS 90

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK   PR+NILL+DDK+FPYI IT+    P L   R     +  YFGP+
Sbjct: 91  NMEALILECNLIKEHHPRYNILLKDDKTFPYIKITN-EPHPRLEVTRRVLKDKAKYFGPY 149

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++T   L R + LR C           CL + I +C  PC  E+  E Y +   
Sbjct: 150 PNAYAAQQTKKLLDRMYPLRKCNVMP----KEVCLYYHIGQCLAPCVHEVEKETYEKMTQ 205

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E   FLSGG+  +K+++ R M++A     +E A   RD++  +  +              
Sbjct: 206 EIVSFLSGGHEEIKKELERKMHEAAEALQFERAKELRDQIINIDALMEKQKITVTDAKDR 265

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  +   G+             ++     +SY  + +  +   P+ 
Sbjct: 266 DVFGYAVDKGWMCVQILYMRQGKMIERHASVFPFYGDA-YGDFMSYVTQYYSDNPALPQE 324

Query: 303 ILLSEEAEETSLL---EISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQK 355
           ILL E+ E+       +     Q    VK  VP++G KR++ + A  NA           
Sbjct: 325 ILLPEKPEDQEEAGALDAPTALQEWLGVKTLVPQRGLKRQMTKMAEENARVTLDEKFRLI 384

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
              E       ++  K   L  +  RIE +DNS+I G + V  MVV  +    K +YRK+
Sbjct: 385 ERDEERTSKAAENLGKAIGLESVS-RIEAFDNSNIQGSNPVSAMVVFIDGKPAKKEYRKY 443

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    VK  DD   MR V+ RR+ +++K                   PD++++DGGKGQ
Sbjct: 444 KVKT--VKGPDDYETMREVIRRRYERVLKEN--------------LPRPDLIVVDGGKGQ 487

Query: 476 LSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           +SAA  VL+ +L +   I +  + K  K        F    E + L       Y +QR++
Sbjct: 488 ISAATDVLENELGLH--IPVCGLVKDAKHKTAQLMAF-DPPEPVYLPRDSQEFYLLQRIQ 544

Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAI+ HR++R K+   S LD I GIG  R++ LL+ FG++K I  +S E    + 
Sbjct: 545 DEVHRFAISFHREQRAKSMVASRLDSIPGIGEKRRKALLKHFGSLKKIKEASVEDFRPL- 603

Query: 594 GISKKIACKIYNHFHKNTS 612
            I  K+A +I N       
Sbjct: 604 SIGDKLARQILNALRDEDP 622


>gi|78224419|ref|YP_386166.1| excinuclease ABC subunit C [Geobacter metallireducens GS-15]
 gi|119367653|sp|Q39QN3|UVRC_GEOMG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78195674|gb|ABB33441.1| Excinuclease ABC subunit C [Geobacter metallireducens GS-15]
          Length = 614

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 194/626 (30%), Positives = 310/626 (49%), Gaps = 35/626 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
            +PE PGVY M    G +LYVGKA +L+KR++SY  +   +   I  +++++  +   VT
Sbjct: 9   TLPESPGVYLMKGSDGTILYVGKAKSLRKRVRSYFGAAGESRYHIRFLVARVAEVEVIVT 68

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EAL+LE  +IK+ +PR+N+ LRDDK++  + +    + P L   R        YFG
Sbjct: 69  DTEKEALILENTLIKKHRPRYNLDLRDDKTYFSLRMDMNEEFPRLTIIRKVRQDGARYFG 128

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P++S  +  + +  L R F LR       R R RPCL +Q+++CS PC G IS E+Y   
Sbjct: 129 PYSSAASAREALKQLYRLFPLRHYPLETCRRRRRPCLFYQLRQCSAPCHGLISPEEYQGL 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
           V  A  FL G N +L +     M  A   E YE A  +RD + A+         +     
Sbjct: 189 VQGAALFLDGKNRDLLKTYRERMASAAANERYEEAARYRDLIRAIEVTVEKQKMVTTGGD 248

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-PCP 300
            D   ++   +   +   F   G+  G+ ++ L  + E    + +S FL  +Y+ +   P
Sbjct: 249 ADVLGIHREGSSLSLALLFIRGGRLIGSRSYLLAWELEDE--EAVSSFLNDYYSREVFIP 306

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L+     +++ L     ++ G +  +  P++G K  +++ A  NA  +  +K   E 
Sbjct: 307 DEVLVPLPVADSAALAELLSERRGKRTSVAHPQRGTKAGLVKLAGKNAEAALREKQKREE 366

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
             + +L +  ++  L ++P+ IE YD S+I G   VG  V   +    K  YR + +   
Sbjct: 367 GAEAVLTELKERLHLRNLPRCIECYDISNIQGTYPVGSRVSFRDGKADKGGYRHYRIKT- 425

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            V   DD AMM  VL RRF      +E+               PD++++DGG GQL+   
Sbjct: 426 -VAGADDFAMMHEVLSRRFRDSPAKDEH---------------PDLIVVDGGIGQLNILT 469

Query: 481 GVLKKLNVENRITIISIAK-GPKRSAGMEK--------FFVKKGEALVLNMRDPILYFIQ 531
            VL++L VE+ +   S+AK   +R    E+        F   +   ++L      L  + 
Sbjct: 470 AVLRELQVED-VDAASLAKSRVERDMAAEELTRSTERVFLPGRKNPVILRQNSAPLLLLA 528

Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R+RDEAHRFAIT H+K R K    S LD I GIGP R++ LL+ FG+++ I  +S + LA
Sbjct: 529 RIRDEAHRFAITYHQKLRGKDTIRSILDTIPGIGPKRRKELLRQFGSLRRIREASRDELA 588

Query: 591 SIEGISKKIACKIYNHFHKN-TSHTP 615
           +   I   +A  I+   H+N    TP
Sbjct: 589 ATPTIPPTLAESIWKSLHENDEGDTP 614


>gi|116748697|ref|YP_845384.1| excinuclease ABC subunit C [Syntrophobacter fumaroxidans MPOB]
 gi|116697761|gb|ABK16949.1| excinuclease ABC, C subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 677

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 191/624 (30%), Positives = 310/624 (49%), Gaps = 29/624 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
            +   P  PGVY   D +G VLYVGKA +L+KRI SY  S      +   ++ +  ++ +
Sbjct: 71  KTASFPHLPGVYLFKDASGAVLYVGKAIDLRKRIASYFKSTGPIPVKTRALMGKAADMEY 130

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  E EALLLEA++IK+ +PR+N++LRDDK++P + I  +   P L   R        
Sbjct: 131 VVTSNEKEALLLEASLIKKHRPRYNVVLRDDKNYPALRIDPREPFPRLEVVRRFQRDGAL 190

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ S  A+ +T+  L + F LR C       R RPCL + + RC G C G +S E Y
Sbjct: 191 YFGPYHSAYALRETLRLLHQLFPLRLCKGKRLLARERPCLNYSLGRCLGACAGRVSPEDY 250

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V E   FL G    L++++ R M  A    ++E A  +RDRL  ++ +      + +
Sbjct: 251 HKMVDEVVLFLQGKTDVLQQQLRRRMADAAEALNFELAAYYRDRLQGIASMLEKQHIVSD 310

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D   L+  +  A +   F   G   G   F L+         + ++  + +  D+
Sbjct: 311 RFLNQDVIGLHVGEEGAELAILFVRKGTLTGQRDFDLRDAQGEPMELLTAFIQQFYREDR 370

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I++    E  +LLE    +  G +V++   ++G++R+++E A  NA   +T +  
Sbjct: 371 YIPDEIVVPAPVEAEALLEEWLTELKGKRVRVWAARRGDRRELLEIAGKNARERYTSRRK 430

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            +     +L++  +   LP  P R+   D S+I G  AVG +VV  E    K+ YR++ +
Sbjct: 431 WQKRDVTMLQNLQRILKLPRAPLRMACVDISNIQGRHAVGAVVVFSEGSPDKDSYRRYRI 490

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
           H       DD AMM  V+ER         E+L               D+++LDGGK QL+
Sbjct: 491 HGK--TEPDDPAMMAEVIERLLKNDAPLAESL---------------DLLVLDGGKSQLN 533

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAG-------MEKFFVKKGEALVLNMRDPILYFI 530
             + ++++L     + +ISIAK  +   G        + +   +   L L+    IL+ +
Sbjct: 534 RIRRLMEELGAAEGLPLISIAKEKETDRGEKGRGLYEKIYLPGRKNPLFLHHYPDILHLL 593

Query: 531 QRLRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QRLRDEAHRFAI+ ++   R     S LD + G+GP R RLL++ FG++K +  +S E +
Sbjct: 594 QRLRDEAHRFAISHYKSLHRNDLLASALDAVPGVGPKRSRLLIRHFGSMKALREASVEDI 653

Query: 590 ASIEGISKKIACKIYNHFHKNTSH 613
           A + G+   +A  I+N    +   
Sbjct: 654 AQVPGVPPTVARTIFNILRSSGEE 677


>gi|120610347|ref|YP_970025.1| excinuclease ABC subunit C [Acidovorax citrulli AAC00-1]
 gi|120588811|gb|ABM32251.1| Excinuclease ABC subunit C [Acidovorax citrulli AAC00-1]
          Length = 670

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 212/663 (31%), Positives = 316/663 (47%), Gaps = 66/663 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+  D  G +LYVGKA NL+KR+ SY    +   RI HM+ +I  +  TV  
Sbjct: 15  SLPPLPGVYRYFDAQGGLLYVGKARNLKKRVSSYFTKTHGGTRIGHMVGKIARLETTVVR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRD 113
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ IT              + P +  +R 
Sbjct: 75  SEAEALLLENNLIKSLNPRYNILFRDDKSYPYLKITGVAARDGTGEQPGQRFPRVAYYRG 134

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
           +   +  YFGP+    AV++TI  LQ+ F LR+C D+VF +RTRPCLL+QIKRCSGPC  
Sbjct: 135 AVDKRHRYFGPYPGAWAVKETILLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSGPCVD 194

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS E Y   V  A   L G    L E +   M   + + ++E A   R+++ ALS + +
Sbjct: 195 LISPEAYALDVRNADAMLRGETRELLEALEARMMAHSERLEFEQAADIRNQITALSRVLH 254

Query: 234 HN---DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE----------- 279
                      +D  ++      AC+       G++ G   +F     +           
Sbjct: 255 QQAIETVSDKDVDILAVKVLGGRACVNLAMVRGGRHLGDRPYFPVHVEDAAAVYQLEEWG 314

Query: 280 ----------------------------STNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
                                       S   Q+L  F+ Q Y   P P  ++ SE  + 
Sbjct: 315 DGGDGPDGAAEAAGAAEAPPAAPRAPQRSLEVQVLEAFIAQHYIGVPVPPVLVTSEPVDR 374

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
             L  +   +Q G +V      + ++R  +E A  NA     + LS E S Q   +   +
Sbjct: 375 ALLEAL--SQQAGIRVGAVHQPREQRRAWLEMAQKNADIQLARLLSEEGSQQARTRALAE 432

Query: 372 KFALPHIPKR---IEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
              LP        IE +D SH  G +     VV   +    ++YR++      +   DD 
Sbjct: 433 ALDLPMDDLESLTIECFDISHTAGEATQASCVVFHHHRMQSSEYRRY--KIEGITGGDDY 490

Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488
           A MR VL RR+S++ + +            +    PD+V++DGGKGQ+S A+ V  +L +
Sbjct: 491 AAMRQVLTRRYSKVAEAQREAGGAEPAPGQA--RLPDLVLIDGGKGQVSMAREVFTELGL 548

Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRK 547
           E    I+ + KG  R  G+E+     G   + L      L  + ++RDEAHRFAIT  R 
Sbjct: 549 ELS-RIVGVEKGEGRKVGLEELVFADGREKIYLGRDSAALMLVAQIRDEAHRFAITGMRA 607

Query: 548 RRKKAAYS--PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            R +       L+EI G+GP ++  LLQ FG V+ ++ +S E LA+++GIS ++A +IY 
Sbjct: 608 ARARVRVGGGQLEEIPGVGPKKRARLLQRFGGVRGVAAASVEDLATVDGISLELAQEIYR 667

Query: 606 HFH 608
              
Sbjct: 668 ALR 670


>gi|153813326|ref|ZP_01965994.1| hypothetical protein RUMOBE_03743 [Ruminococcus obeum ATCC 29174]
 gi|149830616|gb|EDM85707.1| hypothetical protein RUMOBE_03743 [Ruminococcus obeum ATCC 29174]
          Length = 616

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 192/627 (30%), Positives = 314/627 (50%), Gaps = 36/627 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N   +I  M++ I    +
Sbjct: 7   ELKKLPAKPGVYLMHDERDEIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHIARFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE+N+IK  +P++N +L+DDKS+P+I +T +   P +   R     +  
Sbjct: 67  IITDSELEALVLESNLIKEHRPKYNTMLKDDKSYPFIKVTVQEAYPRVLFARRMKKDKNR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+  I  +++ + +RSC  ++ R   + RPCL + +K+C GPCTG     
Sbjct: 127 YFGPYTSGGAVKDVIELVRKLYQVRSCNRNLPRDCGKDRPCLYYHMKQCMGPCTGHADQR 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E + +  +FL+G      +++   M +A+ +  +E A   RD + ++  I       
Sbjct: 187 AYKENIQKVIRFLNGDFQETIDQLTEKMQKASEEMRFEDAAEARDLIRSIQKIGERQKIT 246

Query: 239 -YNRMDCFSLYH--------NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289
            Y   D   +           +  A +Q  F   G+  G   F+L+     T +Q+LS F
Sbjct: 247 AYGEEDRDIIACDMDESLDLREQDAVVQVFFMRDGKLIGRDHFYLRVARGDTRSQVLSSF 306

Query: 290 LRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
           ++QFY   P  P  I L  E E+  ++E     +   KV+I VPK+G K K++E A  NA
Sbjct: 307 VKQFYAGTPFIPGEITLQTEIEDADVIEEWLTSRRKQKVRIVVPKKGTKEKLVELAWENA 366

Query: 349 HRS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
                    +    E      + +      L     R+E +D S+I G  +VG MVV  +
Sbjct: 367 RMVLEKDRERIRREEGRTIGAVHEVEDWLGLK-GLNRMEAFDISNISGFESVGSMVVYEK 425

Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
               ++ YRKF +    V+  +D A M  VL RRF+               +  SF   P
Sbjct: 426 GKPKRSDYRKFRIKS--VQGPNDYASMEEVLTRRFTH----------ESNGEFDSFSRMP 473

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGG+GQ++ A GVL KL +  RI +  + K          F       + ++   
Sbjct: 474 DLLLMDGGRGQVNIALGVLDKLGI--RIPVCGMVKDDHHRTRGLYF---DNIEIPIDTNS 528

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
                I R++DEAHRFAI  HR  R K   +S LD+I GIG  R++ L++ + +++ I  
Sbjct: 529 EGFRLITRIQDEAHRFAIEYHRSLRSKEQVHSVLDDIPGIGERRRKALMRRYRSIEGIRD 588

Query: 584 SSPETLASIEGISKKIACKIYNHFHKN 610
           ++ E LA  E ++   A ++Y  FH N
Sbjct: 589 ATVEELAETESMNIGSAKQVYEFFHPN 615


>gi|221195798|ref|ZP_03568851.1| excinuclease ABC, C subunit [Atopobium rimae ATCC 49626]
 gi|221184272|gb|EEE16666.1| excinuclease ABC, C subunit [Atopobium rimae ATCC 49626]
          Length = 646

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 180/637 (28%), Positives = 311/637 (48%), Gaps = 49/637 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +Q+P  PG Y   D +G+V+YVGKA NL+ R++ Y+   +   +I  M+  + +  + 
Sbjct: 25  QVDQVPVSPGCYLWKDGSGKVIYVGKAKNLRSRMRQYVTLQDDRAKIPLMMQVVRSFDYI 84

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V   E EAL+LE N+I + +P FN+  +DDKS+P+I IT+    PA+   R+       Y
Sbjct: 85  VVENEHEALVLERNLIAQYRPYFNVDFKDDKSYPFIAITESDVFPAIKYTREKHKKGTRY 144

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---------------------DSVFRHRTRPCL 160
           FGP+    A  +TI++L++   + + +                     + +F  + RPC 
Sbjct: 145 FGPYTDSYAARQTIDTLRKVVPICTASCTEWKRCRRELEKHPNEAAVANMIFAEKGRPCF 204

Query: 161 LFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAII 220
            + + R  G C G IS+ +Y + V + + FL G    +  ++   M +A    D+E A  
Sbjct: 205 DYHVGRGPGVCVGAISTAEYGKHVRQVENFLRGNRSEIVMEVQEQMQEAAADLDFERAAR 264

Query: 221 HRDRLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD 277
            + RL ALS + +     +      D    Y  + ++         G+   +  F L   
Sbjct: 265 LKGRLDALSALDDRQQVTFPTSVNLDLIGFYREETISAACVFVVREGRTVRSVEFILDKG 324

Query: 278 SESTNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336
            + +  +++S F++++Y +    P  + +  E  +  ++      + G++  + +P++GE
Sbjct: 325 LDVSEDELVSGFVKRYYDETADVPAEVDVPLELSDAEVISEWLSDKRGHRCGLHLPQRGE 384

Query: 337 KRKIIEQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392
           K +++E A  NA  +  + +     ++      L       AL   P RIE +D S + G
Sbjct: 385 KFRLLEMASKNARHALMRHMIRTGYSDDRSNQALLQLESALALEAPPLRIECFDISTLHG 444

Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452
              V  MVV       K+QYR+F +H   +   +D   M  VL RR+S            
Sbjct: 445 SFTVASMVVFTNGKPDKSQYRRFKIHAE-LDEANDFVSMSEVLGRRYS-----------P 492

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
            +  +  F S PD++++DGGK QL+AA   L +L ++  I +  +AK  +     E F  
Sbjct: 493 ERMADKRFGSRPDLLVVDGGKPQLTAAIQQLAELGLD--IPVCGLAKSDE-----EVFVP 545

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLL 571
                +VL      LY I+++RDE+HRFAIT HR+ R KA   S LDEI G+GP RK+ L
Sbjct: 546 WDDTPIVLPSGSASLYLIKQVRDESHRFAITFHRELRDKAMTVSILDEIPGVGPKRKKDL 605

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ FG+ K ++ +S + +A ++GIS  +A  I++   
Sbjct: 606 MRHFGSFKKLNAASADDIADVKGISPALAQTIFDELK 642


>gi|187478944|ref|YP_786968.1| excinuclease ABC subunit C [Bordetella avium 197N]
 gi|115423530|emb|CAJ50066.1| excinuclease ABC, subunit C [Bordetella avium 197N]
          Length = 577

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 203/595 (34%), Positives = 310/595 (52%), Gaps = 29/595 (4%)

Query: 24  YVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPR 83
           YVGKA +L+KR+ SY      + RI  M+S++  +  TVT +E EAL+LE N+IK L+PR
Sbjct: 2   YVGKARDLKKRVSSYFQKTLASPRIAQMVSKVVRLEVTVTRSEAEALILENNLIKSLRPR 61

Query: 84  FNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFF 143
           +NIL RDDKS+PY+LIT  H+ P +  +R S++ +G YFGP+ +  AV +TI  LQ+ F 
Sbjct: 62  YNILFRDDKSYPYLLIT-AHEWPRIAYYRGSTSKRGQYFGPYPNSWAVRETIQILQKVFR 120

Query: 144 LRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIA 203
           LR+C D+VF +R+RPCLL+QI RCSGPC   I +E Y   V  A +FL+G    + ++I 
Sbjct: 121 LRTCEDTVFANRSRPCLLYQIGRCSGPCVQAIDAEDYRRDVQRAARFLNGEAREVMDEIE 180

Query: 204 RNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRMDCFSLYHNKNLACIQTCF 260
             M QA+ +  +E A + RD++ +LS + +     +      D  ++       C+    
Sbjct: 181 ARMQQASGELRFEEAAVLRDQMGSLSKVLHQQTMENVGGEDTDVIAVASAGGKVCVNLAM 240

Query: 261 FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF 320
              G++ G   FF         AQ+   F+ Q Y D   P  ++ S    +  L+     
Sbjct: 241 VRGGRHLGDKPFFPSHADGEEAAQVQEAFIAQHYADNVLPPVLVCSHALPDVDLI-GLLS 299

Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380
           +Q G + ++    QG +R  +EQA  NA  +  + L+   +         +   L     
Sbjct: 300 EQAGTRCRVLTRPQGVRRSWLEQAQKNAEMALARALTESGARAARTLSLAEALDLDTDEA 359

Query: 381 -----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435
                RIE +D SH  G +     VV   +    + YR++N+    +   DD A MR VL
Sbjct: 360 ALDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYNIVG--ITPGDDYAAMRQVL 417

Query: 436 ERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495
            RRF+++   E                 P +V++DGGKGQ+  A+ V  +L ++    ++
Sbjct: 418 TRRFAKVTDGE--------------APMPGLVLIDGGKGQVEVARQVFVELGLDIG-ALV 462

Query: 496 SIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554
            +AKG  R  G+E          L L      L  I ++RDEAHRFAIT  R +R K   
Sbjct: 463 GVAKGEGRKVGLETLVFADARAPLALGKASAALMLIAQVRDEAHRFAITGMRAKRAKTRN 522

Query: 555 -SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            S L+EI G+G  R++ LL  FG +  ++ +S E LAS++GIS  +A +IY+  H
Sbjct: 523 VSRLEEIEGVGAKRRQRLLARFGGLSGVTSASIEDLASVDGISMDLAERIYDALH 577


>gi|322377826|ref|ZP_08052315.1| excinuclease ABC subunit C [Streptococcus sp. M334]
 gi|321281249|gb|EFX58260.1| excinuclease ABC subunit C [Streptococcus sp. M334]
          Length = 615

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/622 (27%), Positives = 290/622 (46%), Gaps = 43/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIEITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDQIIDDLKGKMAVAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ ++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           Q++ A+  +  +L ++  I I  + K  K     E  F    E + L+      + +QR+
Sbjct: 458 QVNIAKQVIQDELGLD--IPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRI 514

Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           +DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  +
Sbjct: 515 QDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV 574

Query: 593 EGISKKIACKIYNHFHKNTSHT 614
            G+ + +A  +    +   +  
Sbjct: 575 -GVPRAVAEAVQRKLNPQEAEA 595


>gi|23099571|ref|NP_693037.1| excinuclease ABC subunit C [Oceanobacillus iheyensis HTE831]
 gi|32130294|sp|Q8CXB4|UVRC_OCEIH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|22777801|dbj|BAC14072.1| excinuclease ABC subunit C (deoxyribodipyrimidine photolyase)
           [Oceanobacillus iheyensis HTE831]
          Length = 596

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 180/619 (29%), Positives = 299/619 (48%), Gaps = 44/619 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGK+  L+ R++SY    N   +   ++ +I +  + VT +
Sbjct: 12  LPQQPGCYLMKDKNGTVIYVGKSKKLRNRVRSYFRGANDR-KTQRLVQEIRDFEYMVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E+EAL+LE N+IK+  PR+N++L+DDKS+PY+ IT   + P L   R     +G YFGP+
Sbjct: 71  EIEALILEMNLIKKYDPRYNVMLKDDKSYPYLKIT-SERHPRLIVTRRLKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C +       RPCL + + +C        S ++Y E V 
Sbjct: 130 PNVIAARETKKLLDRMYPLRKCNNP----SGRPCLYYHMGQCKACAENPPSVKEYQEIVQ 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL GG  ++++ +A  M +A+   ++E A   RD +  +                 
Sbjct: 186 EISSFLQGGFKDIRKNLAGEMQKASEALNFERAKEIRDTIQHIDATMEQQKMTLTDQMDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+     T             +        + +   P+ 
Sbjct: 246 DIFGYSYDKGWMCVQVFFIRQGKLIERDTSVFPFFDSPEETIVSFIGRFYLHENHLKPKQ 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           +L+    +   L ++   +       + +P +G K+++++ A+ NA              
Sbjct: 306 VLVPVGIDNELLAKVLEIQ-------VHIPLRGRKKELVQLAVKNAEISLNEKFQLIEKD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++D  ++  +     RIE +DNS+I G   V  M+V  +    K +YRK+ + 
Sbjct: 359 EERTIQAIEDLGEQLNIETP-HRIEAFDNSNIQGTDPVSAMIVFEDGKPNKKEYRKYKIR 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++K                   PD++I+DGGKGQ+SA
Sbjct: 418 D--VKGPDDYDTMREVVRRRYSRVLKEN--------------LPLPDLIIVDGGKGQMSA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L ++  I +  +AK  +     E  +      + L  +    Y +QR++DE 
Sbjct: 462 ALEVLEDELGLD--IPLAGLAKDDRHKTS-ELLYGMPPIVVPLERQSQAFYLVQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K+ + S LD+I G+G  R++LLL  F ++  I ++S E +  + GI 
Sbjct: 519 HRFAITFHRQLRGKSLFQSELDKIPGVGEKRRKLLLSHFKSINQIKKASIEDMRKL-GIP 577

Query: 597 KKIACKIYNHFH-KNTSHT 614
             IA  + NH +  N   T
Sbjct: 578 SNIAELVLNHLNSPNDDET 596


>gi|71280471|ref|YP_269952.1| excinuclease ABC subunit C [Colwellia psychrerythraea 34H]
 gi|90111063|sp|Q47Z18|UVRC_COLP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|71146211|gb|AAZ26684.1| excinuclease ABC, C subunit [Colwellia psychrerythraea 34H]
          Length = 639

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 215/615 (34%), Positives = 331/615 (53%), Gaps = 22/615 (3%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           E  GVY+M D    V+YVGKA  L+KR+ SY   +  + +   ++ QI  I  TVT TE 
Sbjct: 31  EQAGVYRMYDSKQVVIYVGKAKQLKKRLASYFRKDVGSVKTQVLVKQIAAIEVTVTHTEG 90

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL+LE N IK+ +P++NILLRDDKS+PY+LIT  HK P L  HR    ++G YFGPF +
Sbjct: 91  EALILENNYIKKYQPKYNILLRDDKSYPYLLIT-AHKHPKLGLHRGGKKVKGEYFGPFPT 149

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
           V AV +++  +Q+ F +R C DS +R R+RPCL  Q+ RCS PC  +IS + Y E V+ A
Sbjct: 150 VGAVWESLRLMQKIFPIRQCEDSYYRARSRPCLQHQLGRCSAPCVDKISVDDYKEQVNLA 209

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCF 245
           K FL G +  + E++   M  A+ +  +E A  +RD++  L  +Q       +   +D  
Sbjct: 210 KLFLQGKSSAVIEQLVARMELASNELHFELAAKYRDQIVTLRKVQQQQHVSGHVAELDVV 269

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP------- 298
            LY +K   CI   F    +  G+ ++F    SES++++IL  F+ Q Y           
Sbjct: 270 GLYRDKTQVCIHLLFIRQHKILGSKSYFPTVPSESSDSEILQAFIAQHYLSNEMLSHGKV 329

Query: 299 ---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ I++ E  E+   L     +Q  Y VKI+   + E+ + ++ A  NAH +   +
Sbjct: 330 QSSIPKEIVIKESIEQVVELARLLSEQAEYDVKISTNTRSERAQYLKLAGTNAHTALVTR 389

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S + S Q       + F L +  +RIE +D SH MG   V   VV  + G +K  YR++
Sbjct: 390 NSHKESMQARFVALNEVFELENGIQRIECFDISHTMGQQTVASNVVFNQEGPLKTDYRRY 449

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M   L +R+ +L  N         ++  +    PD+V +DGGKGQ
Sbjct: 450 NVFG--ITPGDDYAAMAFALNKRYGKLKAN-----PIKPEEHGALEKLPDIVFIDGGKGQ 502

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLR 534
           L+ A+    +L +     ++ +AKG  R  G+E   +    + + L    P L+ +Q +R
Sbjct: 503 LAKAEEFFSQLALTRTPLLVGVAKGESRKPGLETLILAGSHQLISLPATSPALHLVQHIR 562

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE+HRFAIT HR +R+K +  S L+ I GIG  +++ LL   G ++ + ++    LA + 
Sbjct: 563 DESHRFAITGHRAKRQKVSKKSRLESIEGIGAKKRQSLLTFLGGLQEVMQADITALAKVP 622

Query: 594 GISKKIACKIYNHFH 608
           GIS  +A KI+N  H
Sbjct: 623 GISHVLAEKIHNALH 637


>gi|300088039|ref|YP_003758561.1| excinuclease ABC subunit C [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527772|gb|ADJ26240.1| excinuclease ABC, C subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 605

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 202/617 (32%), Positives = 325/617 (52%), Gaps = 31/617 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M + +G+++YVGKA NL+ R++SY  +N     +   ++ +  ++ F
Sbjct: 9   QVQRLPADPGVYLMKNASGQIIYVGKAVNLKNRVRSYFRANARLDDKTRLLVDEARDLEF 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE EAL+LE N+IKR +P +NI+L+DDKS+PY+ IT     P L   R  +   G 
Sbjct: 69  LVTATEQEALILELNLIKRHRPHYNIMLKDDKSYPYLHITAGE-WPRLEVTRRYTEGDGR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF    +V + +  L+R F  RSCA +  +H  RPCL + +KRC  PC+G+I+ E Y
Sbjct: 128 YFGPFTDTRSVRQVLELLRRIFPFRSCARN-LKHVKRPCLEYDMKRCPAPCSGKIAPEDY 186

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            + + +  +FL G   ++  ++ R +  A  + ++E A + RDR+  +  + +       
Sbjct: 187 QKSIEQITRFLEGKQDSVVRQLRREIESAAARLEFEQAAMLRDRVRDIEQVISAQRIAVK 246

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
               +D  +   N N + +   F   G+  G   F LK  +      +L  F+ Q+Y+  
Sbjct: 247 ARGELDAVAQIRNDNESFVMVFFIRGGKLVGREHFILKGTAGENPGAVLGSFVSQYYSAA 306

Query: 298 P-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  +LL    ++  +LE    ++   +V+I VP++G + +++     NA R   Q  
Sbjct: 307 THIPPLVLLESPPDDQQMLEAWLTERRDGRVRINVPRRGARLELMNMVRDNARRGLEQYR 366

Query: 357 STE-----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +       H+  L++  K   L   P RIE YD S+I G  AVG MVV  +       
Sbjct: 367 LKKLLTGAEDHRSALEELAKVLKLKSPPGRIEGYDISNIQGTLAVGSMVVFHQGRPDSKH 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR+F +    V   DD AMM+ V++RRF +             +    +   PD+V++DG
Sbjct: 427 YRRFRIRT--VAGADDFAMMKEVIDRRFRR----------PTDQAGDDWAKLPDLVLIDG 474

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQLSAA   L++   E  I +I +AK  +     E F       +VL+ R P    +Q
Sbjct: 475 GKGQLSAAMAALRERQYE-HIPVIGLAKERE-----EIFIPGLSRPIVLDERSPARRLLQ 528

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R+RDEAHRFA+  H   R+K+A  S LD + GIGP ++R L++ FG+V  +  +S E LA
Sbjct: 529 RIRDEAHRFALGYHGALRRKSATGSLLDAVPGIGPAKRRALIRQFGSVAGVRTASAEELA 588

Query: 591 SIEGISKKIACKIYNHF 607
           +++GI+ ++A  +    
Sbjct: 589 TVKGITPRLARLVKESL 605


>gi|220928256|ref|YP_002505165.1| excinuclease ABC subunit C [Clostridium cellulolyticum H10]
 gi|254764928|sp|B8I8F2|UVRC_CLOCE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|219998584|gb|ACL75185.1| excinuclease ABC, C subunit [Clostridium cellulolyticum H10]
          Length = 613

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 188/619 (30%), Positives = 313/619 (50%), Gaps = 24/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             +++P+  GVY M D  G V+YVGKA  L+ R++ Y   S NH  ++  M+S+++   +
Sbjct: 7   ELKKLPDKSGVYIMKDANGVVIYVGKAVVLKNRVRQYFQQSANHPPKVQAMVSKVSEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +EVEAL+LE  +IK+ KP++NILL+DDK +PYI +T   + P + K R        
Sbjct: 67  IVVDSEVEALMLECTLIKKYKPKYNILLKDDKHYPYIKVTLNEEYPRILKTRRVEKDGAR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP++S  AV  TI++L++ F L++C  ++ R   +TRPCL + +K+C  PC G ++ +
Sbjct: 127 YFGPYSSGFAVNDTIDTLKKLFSLKTCNKNLPRDIGKTRPCLNYHMKQCLAPCQGGVNRD 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y E + +  +FL G    +   +   M  A  + D+E A   R+++ ++  +      +
Sbjct: 187 EYREMMKKICRFLGGQYDEIINDLRIQMETAAEQLDFEKAAQLRNKITSIKQLSESQKVL 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           +      D      +    CIQ  F   G+  G   F  + ++       LS F++QFYT
Sbjct: 247 FTDLEDRDIIGYSADSTDLCIQVFFVRNGRVIGREHFIFEGEANEDKGYSLSTFIKQFYT 306

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             +  P  I+L  E +++  +     ++ G+KV + VP++G+  K++     NA  +   
Sbjct: 307 KVQYVPSEIVLQSEVDDSETIAKWLTEKRGFKVALRVPQRGDLVKLVHMVSENAEITLKL 366

Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
               +      H   +    K   L   P RIE YD S+      V  MVV       + 
Sbjct: 367 HRERQSREGTVHSEGMAQLVKLLGLEEAPARIESYDISNTGSSEIVASMVVFENGRPARQ 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YRKF +    ++ Q+D   M+  L RR ++  + +E        +   F   PD++++D
Sbjct: 427 EYRKFKMKS--IEQQNDYGSMQETLFRRLNRAKREKEE-----GTENAKFSKLPDLILVD 479

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG   ++AA+ V+++L       I  +AK  +         V  G    L    P+L FI
Sbjct: 480 GGSNHVNAARQVVEELGY--NFKIAGMAKDDRHRTKS---LVYMGNEYELATNMPLLRFI 534

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
             ++DE HR A+  +RK R K+   S LDEI GIG  RK+ L++ F +V  I ++    L
Sbjct: 535 TEIQDETHRVAVEYNRKLREKRYVRSELDEIEGIGQTRKKALIKHFKSVAAIRKADIAQL 594

Query: 590 ASIEGISKKIACKIYNHFH 608
             + GIS+KIA  IY +F+
Sbjct: 595 QEVNGISEKIAKNIYEYFN 613


>gi|220905823|ref|YP_002481134.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7425]
 gi|254764930|sp|B8HSX6|UVRC_CYAP4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|219862434|gb|ACL42773.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7425]
          Length = 624

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 200/620 (32%), Positives = 305/620 (49%), Gaps = 28/620 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61
            +++P  PGVY M D   ++LY+GK+  L+ R++SY    N    R+  M+ Q+  I F 
Sbjct: 20  LKEIPAEPGVYFMRDSQDQILYIGKSKKLRSRVRSYFRKFNELGPRLELMVRQVAEIEFI 79

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119
           VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 80  VTDTEAEALALEANLIKQHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRKRRAEAKDD 139

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+     + +T+  ++R F LR     +F  + RPCL F I RC G C   I+SE 
Sbjct: 140 RYYGPYTDTHLLRQTLGLVKRIFPLRQRPKPLF--KDRPCLNFDIGRCPGVCQQLIASED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + +H+      G    L + +   M  A    ++E A   RD++  L  +        
Sbjct: 198 YRKTIHKVAMIFQGRTSELIDTLTPQMEAAAENLNFEQAARIRDQINGLKTLGEEQKVSL 257

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  ++  ACIQ      G+  G   F     S      IL   L + Y 
Sbjct: 258 PDDTVSRDAIALAADEQHACIQLFQIRAGRLVGRLGFVADAQSG-PPGAILQRVLEEHYA 316

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  IL+  E  E  +L     +  G KV + VP++  K ++IE    NA    
Sbjct: 317 GADPVEIPAEILVQTELPEAEMLATYLTEYKGRKVTLLVPQRQSKAELIEMVERNAQYEL 376

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +       +    KD  +   LP +P+RIE YD SH+ G  AV   VV  +    K  Y
Sbjct: 377 ARTQRFSDRNAEAQKDLAELLDLPELPQRIEGYDISHVQGSDAVASRVVFIDGLPAKQHY 436

Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           R + +   +V      D A +  V++RRF + I+       HP+    S P WPD++++D
Sbjct: 437 RHYKIKNPNVTAGHSDDFASLAEVVQRRFRKFIE-------HPETDRLSDPDWPDLIMID 489

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLSA    L    +   + I+S+AK  +     E F   +   L  +   P +  +
Sbjct: 490 GGKGQLSAVVNALSGTGLLEDLQIVSLAKQRE-----EIFLPGESLPLNTDPDQPGVQLL 544

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           +RLRDEAHRFA++ HR++R ++   S LDEI G+G  R++ LL +F ++  I  +SPE L
Sbjct: 545 RRLRDEAHRFAVSFHRQQRTERMRRSRLDEIPGLGYERQKQLLAAFRSIDYIREASPEQL 604

Query: 590 ASIEGISKKIACKIYNHFHK 609
           A++  I  ++A +IY++FH 
Sbjct: 605 ATVPLIGPRLAQQIYDYFHP 624


>gi|229505193|ref|ZP_04394703.1| excinuclease ABC subunit C [Vibrio cholerae BX 330286]
 gi|229511137|ref|ZP_04400616.1| excinuclease ABC subunit C [Vibrio cholerae B33]
 gi|229518256|ref|ZP_04407700.1| excinuclease ABC subunit C [Vibrio cholerae RC9]
 gi|229608212|ref|YP_002878860.1| excinuclease ABC subunit C [Vibrio cholerae MJ-1236]
 gi|255745618|ref|ZP_05419566.1| excinuclease ABC subunit C [Vibrio cholera CIRS 101]
 gi|262159107|ref|ZP_06030219.1| excinuclease ABC subunit C [Vibrio cholerae INDRE 91/1]
 gi|262169465|ref|ZP_06037157.1| excinuclease ABC subunit C [Vibrio cholerae RC27]
 gi|229344971|gb|EEO09945.1| excinuclease ABC subunit C [Vibrio cholerae RC9]
 gi|229351102|gb|EEO16043.1| excinuclease ABC subunit C [Vibrio cholerae B33]
 gi|229357416|gb|EEO22333.1| excinuclease ABC subunit C [Vibrio cholerae BX 330286]
 gi|229370867|gb|ACQ61290.1| excinuclease ABC subunit C [Vibrio cholerae MJ-1236]
 gi|255736693|gb|EET92090.1| excinuclease ABC subunit C [Vibrio cholera CIRS 101]
 gi|262022278|gb|EEY40987.1| excinuclease ABC subunit C [Vibrio cholerae RC27]
 gi|262029292|gb|EEY47944.1| excinuclease ABC subunit C [Vibrio cholerae INDRE 91/1]
 gi|327483911|gb|AEA78318.1| Excinuclease ABC subunit C [Vibrio cholerae LMA3894-4]
          Length = 588

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 205/607 (33%), Positives = 320/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y E VH  + FL G
Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            ++ +   +   M QA+ +  +E A   RD++ A+  +Q       +    +D       
Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306
             +ACI       G+  G+ + F K  S+++  ++   FL Q+Y      +  P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
               EET  L+I+  +  G KV   V   G + + ++ A  NA  + T K++ +++    
Sbjct: 300 RGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKMNHKMTISQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K   ++  +  I  R+E +D SH MG S +   VV  + G +K +YR++N+    +   
Sbjct: 360 FKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+S+ +                    PD++ +DGGKGQL+ A  ++  
Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +      II IAKG  R  G+E      G+   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|315174486|gb|EFU18503.1| excinuclease ABC subunit C [Enterococcus faecalis TX1346]
          Length = 598

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 184/616 (29%), Positives = 311/616 (50%), Gaps = 41/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++S+I++  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+I +  P++NI+L+DDK++P+I IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIHKNNPKYNIMLKDDKTYPFIKITN-EKYPRLMITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V+A  +T   L R F LR C       +  PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVNAANETKKLLDRLFPLRKCN----PSQKTPCLYYHLGQCLCPYAFDVDPQVYKDMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRM 242
           E K FLSGG+  +++++   M  A    ++E A   RD++ A+  +       +      
Sbjct: 186 EIKGFLSGGHTEIQDRLQEKMAYAAAHMEFEKAAEFRDQIKAIETVMTRQKMTNVDLIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             +++ A +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSIFPFYDDASEAFLTFIGQFYQENEHFVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ ++ ++ S+  +   K       +  P++GEK+K+++ A  NA    +      +  
Sbjct: 306 VLIPDDIDKESVEALLATK-------VLQPQRGEKKKLVKLASKNAAVALNEKFDLIVRK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    KN+YRK+ + 
Sbjct: 359 QERTIGAVEKLGNAMNIPAP-IRIEAFDNSNIMGTNPVSAMVVFIDGRPAKNEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+S+++K                  +PD++++DGGKGQ+  
Sbjct: 418 T--VQGPDDYASMREVIYRRYSRVLKEG--------------LPFPDLILIDGGKGQVDV 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  +AK  K     E  F    E + L       + +QR++DE H
Sbjct: 462 AKDVLAN-QLGVDIPVAGLAKNDKHKTS-ELLFGPNLEVVPLERNLQEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD I G+GP RK+ LL+ F ++K I+ +S E L    G+ +
Sbjct: 520 RFAITFHRQLRSKNSFASKLDNIEGLGPKRKKNLLKEFKSLKNITAASVEELRKA-GLPE 578

Query: 598 KIACKIYNHFHKNTSH 613
            +A  +Y H H+ T+ 
Sbjct: 579 TVAKNVYRHLHQETTS 594


>gi|332359626|gb|EGJ37443.1| excinuclease ABC subunit C [Streptococcus sanguinis SK355]
          Length = 611

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 170/622 (27%), Positives = 294/622 (47%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D    ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNDTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K +        P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPPDIDEEAVRAMVDTKVFK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +       +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LERSIEKTHGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K+++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKSSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +  T    
Sbjct: 575 GVPRAVAEAVQRKLNPKTQEQE 596


>gi|168185645|ref|ZP_02620280.1| excinuclease ABC, C subunit [Clostridium botulinum C str. Eklund]
 gi|169296408|gb|EDS78541.1| excinuclease ABC, C subunit [Clostridium botulinum C str. Eklund]
          Length = 621

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 194/621 (31%), Positives = 325/621 (52%), Gaps = 19/621 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +PE PGVY M +  G V+YVGKA  L+ R++ Y   S +H  ++  M+  I    +
Sbjct: 7   QLKIIPEKPGVYLMKNSLGEVIYVGKAKVLKNRVRQYFQNSKSHGSKVRAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +PR+NILL+DDK +P++ IT     P ++  R  +     
Sbjct: 67  IITDSEMEALILECNLIKKYRPRYNILLKDDKHYPFLKITTNEDFPRIFVTRVRAKDGAR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    AV  TI  +++ F LR+C  ++  +    +PCL + IK C  PC G IS E
Sbjct: 127 YFGPYPETSAVYDTIELIKKIFPLRTCRLNIKENSEPIKPCLNYHIKLCMAPCAGYISRE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y + + +    L+G ++++   +   M +A+ + ++E A   RD++ A+  I+      
Sbjct: 187 EYRKIIKKIIDLLNGKDNDVINDLKSKMEKASEELNFEEAATLRDKILAVEKIRERQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +   D  ++Y  +   C Q  F   G+  G   F L       NA I+S F+++FY 
Sbjct: 247 SSNFENEDFINIYSEEVDLCAQIFFIRDGKIMGREHFILDRSIFGNNADIISDFIKEFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   + + E  +  LLE     + G KV I +P++GEK+K+++    NA     + 
Sbjct: 307 GTAFIPKNIYAPEVMDIELLENWLSSKKGSKVSIKIPQKGEKKKLLDLVESNAKNTLEQF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +    +  +   LK+      L  IP RIE YD S+I G  +VG M+V  +     + 
Sbjct: 367 KLKLKVDKELYSNTLKELQNVLGLEEIPNRIEAYDISNIQGVDSVGSMIVFDKGKPKNSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F +    VK  +D   MR +L RRF+  +   +E            F  +PD++++D
Sbjct: 427 YRRFKIKT--VKGANDYDSMREILTRRFTHGLGEIKEIQKRDLLLSGAKFSIFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL+KLN+   I +  + K  K         V   + + +   + I+ FI
Sbjct: 485 GGKGQVNIALEVLEKLNI--NIPVCGMVKDDKHKTRG---LVYNNKEINIKSNNKIMQFI 539

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAIT HR  R ++  +S L++I  +G  R++ LLQ FG+++ I ++S E L
Sbjct: 540 TRVQDEVHRFAITYHRSLRNRRVLHSVLEDIPNVGQKRRKELLQKFGSIENIKKASYEEL 599

Query: 590 ASIEGISKKIACKIYNHFHKN 610
              + I++K A  I ++F+ +
Sbjct: 600 LDTDSINEKAAKSIIDYFNND 620


>gi|307703209|ref|ZP_07640155.1| excinuclease ABC, C subunit [Streptococcus oralis ATCC 35037]
 gi|307623284|gb|EFO02275.1| excinuclease ABC, C subunit [Streptococcus oralis ATCC 35037]
          Length = 615

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/618 (27%), Positives = 288/618 (46%), Gaps = 41/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLAKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNT 611
           G+ + +A  +    +   
Sbjct: 575 GVPRAVAEAVQRKLNPQE 592


>gi|194398570|ref|YP_002037276.1| excinuclease ABC subunit C [Streptococcus pneumoniae G54]
 gi|226698795|sp|B5E2L2|UVRC_STRP4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194358237|gb|ACF56685.1| excinuclease ABC, C subunit [Streptococcus pneumoniae G54]
          Length = 615

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/620 (27%), Positives = 292/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +   + 
Sbjct: 575 GVPRAVAEAVQTKLNPQETE 594


>gi|229515596|ref|ZP_04405055.1| excinuclease ABC subunit C [Vibrio cholerae TMA 21]
 gi|229347365|gb|EEO12325.1| excinuclease ABC subunit C [Vibrio cholerae TMA 21]
          Length = 588

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 204/607 (33%), Positives = 319/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y E VH  + FL G
Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHHLRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            ++ +   +   M QA+ +  +E A   RD++ A+  +Q       +    +D       
Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306
             +ACI       G+  G+ + F K  S+++  ++   FL Q+Y      +  P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
               EET  L+ +  +  G KV   V   G + + ++ A  NA  + T K++ +++    
Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKINHKMTINQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K   ++  +  I  R+E +D SH MG S +   VV  + G +K +YR++N+    +   
Sbjct: 360 FKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+S+ +                    PD++ +DGGKGQL+ A  ++  
Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +      II IAKG  R  G+E      G+   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|307706144|ref|ZP_07642963.1| excinuclease ABC, C subunit [Streptococcus mitis SK321]
 gi|307618544|gb|EFN97692.1| excinuclease ABC, C subunit [Streptococcus mitis SK321]
          Length = 615

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/619 (27%), Positives = 289/619 (46%), Gaps = 43/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + +++  NM  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDELKGNMTAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++      +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGSLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           Q++ A+  +  +L ++  I I  + K  K     E  F    E + L+      + +QR+
Sbjct: 458 QVNIAKQVIQDELGLD--IPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRI 514

Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           +DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  +
Sbjct: 515 QDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASLDEIVEV 574

Query: 593 EGISKKIACKIYNHFHKNT 611
            G+ + +A  +    +   
Sbjct: 575 -GVPRAVAEDVKRKLNSQE 592


>gi|84489382|ref|YP_447614.1| excinuclease ABC subunit C [Methanosphaera stadtmanae DSM 3091]
 gi|119367671|sp|Q2NGT2|UVRC_METST RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|84372701|gb|ABC56971.1| UvrC [Methanosphaera stadtmanae DSM 3091]
          Length = 598

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 195/617 (31%), Positives = 313/617 (50%), Gaps = 30/617 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIRF 60
            +++P+ PGVY M +    V+YVGKA  L+ R++SY    +     +   ++   +   +
Sbjct: 6   PDEVPQKPGVYIMHNKEDEVIYVGKAKKLKSRLQSYFRDEDKLDRPKTQFLMRHFSYFEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T TE EAL+LEAN+IK+ +P +NI L+D K +PYI IT+    P +Y  R+    + S
Sbjct: 66  ILTNTEKEALILEANLIKKYRPHYNISLKDGKQYPYIKITN-EDFPRIYITRNIVNDKAS 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GP+         I+ L + F +R+      +H   PCL +QIK+CS PC   IS E+Y
Sbjct: 125 YYGPYTDSTHARAFIDFLNKNFQIRT-----CKHMDGPCLNYQIKQCSAPCVNYISQEEY 179

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              +   K  L G      +K+ ++MN+     ++E A + RD++  +       +   N
Sbjct: 180 NRNIRRVKLLLQGKYKTTIKKLKKDMNRYAKNMEFEKAAMLRDQIDTIKITLEKQNIQPN 239

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           +    D     HN   A +       G+        LK     ++ QI + F++Q+Y+  
Sbjct: 240 QDVNQDIIGFDHNNEEAAVVILSVRSGKTNKKDDLVLKGIKGFSDKQIRTEFIKQYYSTA 299

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
           P P+ I+L ++ E+  ++     ++  +K+KITV   G    +I+ A  NAH S T+   
Sbjct: 300 PLPDEIILEDDIEDKDVIVEWLEEKANHKIKITVATDGHYITLIKIAKKNAHISLTENTK 359

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            E +    L    K   LP +P  IE +D S+I G  AV  MVV       K  YRKF +
Sbjct: 360 EEENP---LLTLEKYLNLPRLPYHIEAFDISNISGIYAVASMVVFENGKPAKKMYRKFKM 416

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
           +       +D AMM+ V+ RR+S +  N  N          S    PD+V++DGGKGQL 
Sbjct: 417 NT---PGPNDFAMMKEVITRRYSHISPNNTN------NTSDSLSIHPDLVLIDGGKGQLG 467

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            A  V KKLN+ + + +  +AK  +     E +   +   ++L  +   L+ +Q +RDE+
Sbjct: 468 MAVDVFKKLNITD-VPLAGLAKKFE-----EVYLPGQTNPIILPRQSSALHLLQYVRDES 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HRK R KA   S LD+I G+G  RK+ LL  F ++  I  +S + +  ++GI+
Sbjct: 522 HRFAITFHRKLRSKAFTKSILDDIPGVGKKRKQALLTHFESLDNIYNASFDEICQVKGIN 581

Query: 597 KKIACKIYNHFHKNTSH 613
           +K+A  IY    ++   
Sbjct: 582 QKLAKTIYETLKEDKKE 598


>gi|25028267|ref|NP_738321.1| excinuclease ABC subunit C [Corynebacterium efficiens YS-314]
 gi|259507326|ref|ZP_05750226.1| excinuclease ABC, subunit C [Corynebacterium efficiens YS-314]
 gi|81750450|sp|Q8FT60|UVRC_COREF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|23493551|dbj|BAC18521.1| putative excinuclease ABC subunit C [Corynebacterium efficiens
           YS-314]
 gi|259165130|gb|EEW49684.1| excinuclease ABC, subunit C [Corynebacterium efficiens YS-314]
          Length = 681

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 184/673 (27%), Positives = 301/673 (44%), Gaps = 74/673 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D A RV+YVGKA NL+ R+ +Y         R   M+   +++ +TV 
Sbjct: 13  TIPTEPGVYKFRDDARRVIYVGKAKNLRARLSNYFQDVTQLHPRTRQMVFAASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IKR  PRFN+  RDDKS+P + ++   + P  + +R        Y+G
Sbjct: 73  GSEVEALQLEYTWIKRFDPRFNVKYRDDKSYPMLAVSTGERFPRAFFYRGPRRKGVRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV +T++ L R F +R+C+  VF       RPCLL  I +C+ PC G +S E++
Sbjct: 133 PYSHAWAVRETLDLLIRVFPMRTCSKGVFNRHENLGRPCLLGYIDKCAAPCVGRVSEEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V     F+SG    +  ++   M  A+ + D+E A   RD L A++ +      +  
Sbjct: 193 REIVEGFCSFMSGHTDKVTRELTAEMMAASEELDFERAARLRDDLGAINKVMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI------------ 285
                D  +   ++  A +Q      G+ RG   + ++   +                  
Sbjct: 253 DGTDADIIAFATDELEAAVQIFHVRGGRIRGQRGWVVEKTGDWDLPDDSDAEGPDPALPH 312

Query: 286 -LSYFLRQFYTDKP-----------------------------CPENILLSEEAEETSLL 315
            + +FL QFY D                                P  IL+  E  E    
Sbjct: 313 LMQHFLVQFYGDAVERAESEAAEDAEHIERRGVDQYREATPAVVPREILVQVEPHEAQET 372

Query: 316 EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTK 371
                +  G  V + VP++G+KR ++E    NA     Q          +    L+D  +
Sbjct: 373 RKVLEELRGAGVDLRVPQRGDKRSLMETVEKNAREQLKQHKIKRVGDLTARSAALQDIQE 432

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAM 430
              +   P RIE  D SHI G   V  +VV  +    K+ YR++ +         +D A 
Sbjct: 433 ALDMEQAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRIKEAAGDGHSNDVAS 492

Query: 431 MRMVLERRFSQLIKNE-------------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
           +  V  RRF +  +++             +            F   P + I+DGG  Q++
Sbjct: 493 IAEVTRRRFLRHHRDKLAVPEELDDATFSDEKVEEMSTDNRRFAYPPQLFIVDGGAPQVA 552

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AAQ V  +L + + +T++ +AK  +     E +     + ++L    P L+ +Q++RDEA
Sbjct: 553 AAQEVFDELGIVD-VTLVGLAKRLE-----EIWLPGDPDPVILPRNSPALFLLQQVRDEA 606

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR++R K    S LD+I G+G  R+  L++ FG+V  +  ++   +A + G  
Sbjct: 607 HRFAITYHRQQRSKRMRVSELDDIRGLGQARRTELVKHFGSVARLREATVGDIAGVRGFG 666

Query: 597 KKIACKIYNHFHK 609
            K+A  ++   H 
Sbjct: 667 PKLAQSVFEALHP 679


>gi|262402433|ref|ZP_06078994.1| excinuclease ABC subunit C [Vibrio sp. RC586]
 gi|262351215|gb|EEZ00348.1| excinuclease ABC subunit C [Vibrio sp. RC586]
          Length = 588

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 204/607 (33%), Positives = 318/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGTKKRRGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y E V   + FL G
Sbjct: 120 LHLIQKIFPIRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVQYLRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            ++ +   +   M QA+ +  +E A   RD++ A+  +Q       +    +D       
Sbjct: 180 KDNQVLSMLVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306
             +ACI       G+  G+ + F K  S+++  ++   FL Q+Y      +  P  I+L+
Sbjct: 240 IGMACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
               EET  L+ +  +  G KV   V   G + + ++ A  NA  + T K++ +++    
Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKINHKMTISQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K   ++  +  I  R+E +D SH MG S +   VV  + G VK +YR++N+    +   
Sbjct: 360 FKALQEELGMDAIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+S+ +                    PD++ +DGGKGQL+ A  ++  
Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +      II IAKG  R  G+E      G+   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|322374742|ref|ZP_08049256.1| excinuclease ABC subunit C [Streptococcus sp. C300]
 gi|321280242|gb|EFX57281.1| excinuclease ABC subunit C [Streptococcus sp. C300]
          Length = 615

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/619 (27%), Positives = 291/619 (47%), Gaps = 41/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDGAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M +A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMAKAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  ++  K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALADTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++      +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGHLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTS 612
           G+ + +A  +    +   +
Sbjct: 575 GVPRAVAEAVQRKLNPQEA 593


>gi|227824382|ref|ZP_03989214.1| excinuclease ABC subunit C [Acidaminococcus sp. D21]
 gi|226904881|gb|EEH90799.1| excinuclease ABC subunit C [Acidaminococcus sp. D21]
          Length = 608

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 188/625 (30%), Positives = 317/625 (50%), Gaps = 39/625 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            + +P+ PGVY M D AGRV+YVGKA  L+ R++SY    +  + ++  + + +++I   
Sbjct: 9   LKVLPDAPGVYIMHDAAGRVIYVGKAVILKNRVRSYFRKASQVSPKVRAINAHVDSIETI 68

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  +E+EAL+LE N+IK+ +PR+NI L+DDK++PY+ IT     P +Y  R        Y
Sbjct: 69  VCASEMEALILECNLIKKYRPRYNIELKDDKTYPYLKITVDEAYPRMYITRRVQKDGAKY 128

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+A V A+ +T+  ++  F LR C     +   RPCL + + RC  PCTG++   +Y 
Sbjct: 129 YGPYADVGALRETMRLIRSMFPLRHCRSMNVK---RPCLQYHLHRCLAPCTGKVPLSEYR 185

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSIY 239
           + V E    + G    L+ ++ + M  A+ K +YE A  +RD L +L+ ++      +  
Sbjct: 186 KLVDEVLLLMDGKVTELRRQLTKKMQDASDKMEYEKAAQYRDSLLSLNKLEESQKATTES 245

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
              D   L  +    C++  F   G+  G  +FFL  +     A+ILS F+R++Y ++  
Sbjct: 246 GDRDVIGLAVDDTGVCLEVFFVRNGKILGRDSFFLDDEKGEPAAEILSAFIREYYQEEHR 305

Query: 300 PENILLSE---EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           P   +++      ++ +LL     ++    V I VP++G K  +I  A  NA ++  ++L
Sbjct: 306 PPKEIITSSGLFDKDRALLSQWLTEKNEKNVTILVPQRGIKHDLILMAEENAKKNLDERL 365

Query: 357 ST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   +D      +    +R++ +D SH  G   V  MVV       K  Y
Sbjct: 366 RKGRLALKPAEEAAEDLAHAIGMTGPLERMDCFDISHNQGAETVASMVVFRNGSPSKKDY 425

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           R++ L   +    DD   M+ V+ RR+                        P ++I+DGG
Sbjct: 426 RRYKLRSTEG-KPDDFKSMQEVVYRRYKDAED------------------IPSLIIIDGG 466

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQLS+A  V++ + +   + +I +AK  +     E F     E+++L+     L+ IQ 
Sbjct: 467 KGQLSSALEVIRGVGL-GDVRVIGLAKREE-----EIFTEGAHESILLDKSSAALHLIQH 520

Query: 533 LRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDEAHRFAIT HRKR  K+   S LD I GIGP R+  L Q F +++ +  +S + L +
Sbjct: 521 IRDEAHRFAITYHRKRLAKRNLVSVLDHIEGIGPKRRAALWQRFASLEKMREASVDDLEA 580

Query: 592 IEGISKKIACKIYNHFHKNTSHTPT 616
           +  +++  A K++   H + S   T
Sbjct: 581 VPTMTRTAAEKLFAFLHASASDKRT 605


>gi|229521334|ref|ZP_04410753.1| excinuclease ABC subunit C [Vibrio cholerae TM 11079-80]
 gi|229341432|gb|EEO06435.1| excinuclease ABC subunit C [Vibrio cholerae TM 11079-80]
          Length = 588

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 204/607 (33%), Positives = 319/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y E VH  + FL G
Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            ++ +   +   M QA+ +  +E A   RD++ A+  +Q       +    +D       
Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306
             +ACI       G+  G+ + F K  S+++  ++   FL Q+Y      +  P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
               EET  L+ +  +  G KV   V   G + + ++ A  NA  + T K++ +++    
Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKINHKMTINQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K   ++  +  I  R+E +D SH MG S +   VV  + G +K +YR++N+    +   
Sbjct: 360 FKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+S+ +                    PD++ +DGGKGQL+ A  ++  
Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +      II IAKG  R  G+E      G+   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|229825769|ref|ZP_04451838.1| hypothetical protein GCWU000182_01132 [Abiotrophia defectiva ATCC
           49176]
 gi|229790332|gb|EEP26446.1| hypothetical protein GCWU000182_01132 [Abiotrophia defectiva ATCC
           49176]
          Length = 621

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 188/622 (30%), Positives = 310/622 (49%), Gaps = 21/622 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             +++P  PGVY M +    ++YVGKA +L+ R++ Y  S N H+ +I  M+  I++  +
Sbjct: 7   ELKKLPSKPGVYIMHNELDEIIYVGKAISLKNRVRQYFQSINRHSPKIKRMVENIDHFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +++DDKS+PYI +T   + P +   R     +  
Sbjct: 67  IITDSELEALVLECNLIKEHRPKYNTMMKDDKSYPYIKVTVDEEFPRVMFTRKRGKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ +  +    +                   + RPCL +QI RC G C G + S +Y
Sbjct: 127 YFGPYPAHISETLELIHKIYKIRTCRRNLPKDIGKERPCLNYQIGRCDGVCQGYVESAEY 186

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + + E  KFL+G    + + I   M +A+ K ++E A  +RD L  +    +      N
Sbjct: 187 KKRIDEVIKFLNGDYEPILKMITDKMMEASEKLEFEEAANYRDMLTHVKRFSDRQKINSN 246

Query: 241 RM----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  +L      A +Q  F   G+      F L    +     I + F++Q+YT 
Sbjct: 247 DNVDDRDVLALAKAGKEAVMQVFFIRAGRLIRREHFSLDNVGDDEKGAIYTDFIKQYYTG 306

Query: 297 KP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351
            P  P++I+L++E EE  LL      + G KV I VPK+GEK  + E A  NA    ++ 
Sbjct: 307 TPFIPKDIMLADEPEEKELLAQWLATKRGNKVNILVPKRGEKAGLTELAYKNAAMVLNQD 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +    +      +K+  +   + +  KRIE YD S+  G   VG MVV  +    KN 
Sbjct: 367 SERNKREQARTLGAVKELKELLGIKNDIKRIESYDISNTSGFENVGSMVVFEDGKPKKND 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK---QEYSFPSWPDVVI 468
           YRKF +    V   +D A M  VL RRF   +K +E L    K    +E  F  +PD+++
Sbjct: 427 YRKFRIKG--VVGPNDYASMEEVLTRRFEHGLKEKEELKILEKAGMIKEGKFAHFPDIIL 484

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGG+GQ++    VL+KL ++  I +  + K  +                 ++    +  
Sbjct: 485 MDGGRGQINICLKVLEKLGID--IAVAGLVKDDRHRTRG---IYYNNVEQPIDTHGELFK 539

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            I R++DE HRFAI  H+  R K   +S LD+I GIG +R++ L++ F ++  I  ++ E
Sbjct: 540 LITRIQDETHRFAIEYHKLLRGKNQVHSVLDDIKGIGKVRRKALMKHFASLDDIKAATEE 599

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            LA++EG+++  A  +   F +
Sbjct: 600 ELAAVEGMNEGAARAVREFFRE 621


>gi|324991041|gb|EGC22975.1| excinuclease ABC subunit C [Streptococcus sanguinis SK353]
          Length = 611

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 171/622 (27%), Positives = 293/622 (47%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ESYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 DLAQEVAAFLKGQDDQIIEDLRGKMASAAQTMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A  NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNIAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +  T    
Sbjct: 575 GVPRAVAEAVREKLNPKTQEQE 596


>gi|168492779|ref|ZP_02716922.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC3059-06]
 gi|182683548|ref|YP_001835295.1| excinuclease ABC subunit C [Streptococcus pneumoniae CGSP14]
 gi|221231440|ref|YP_002510592.1| UvrABC DNA repair system protein C [Streptococcus pneumoniae ATCC
           700669]
 gi|298229725|ref|ZP_06963406.1| excinuclease ABC subunit C [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255477|ref|ZP_06979063.1| excinuclease ABC subunit C [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502409|ref|YP_003724349.1| excision endonuclease subunit UvrC [Streptococcus pneumoniae
           TCH8431/19A]
 gi|229557869|sp|B2IMT4|UVRC_STRPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764946|sp|B8ZMK5|UVRC_STRPJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|182628882|gb|ACB89830.1| excinuclease ABC subunit C [Streptococcus pneumoniae CGSP14]
 gi|183576998|gb|EDT97526.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC3059-06]
 gi|220673900|emb|CAR68406.1| UvrABC DNA repair system protein C [Streptococcus pneumoniae ATCC
           700669]
 gi|298238004|gb|ADI69135.1| excision endonuclease subunit UvrC [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 615

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/620 (27%), Positives = 292/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEIYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +   + 
Sbjct: 575 GVPRAVAEAVQTKLNPQETE 594


>gi|307710657|ref|ZP_07647090.1| excinuclease ABC, C subunit [Streptococcus mitis SK564]
 gi|307618600|gb|EFN97743.1| excinuclease ABC, C subunit [Streptococcus mitis SK564]
          Length = 615

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/621 (27%), Positives = 292/621 (47%), Gaps = 41/621 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R     +G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDEGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E  +FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSEFLKGQDDKIIDDLKGKMAVAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++              +    + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRV--------------QRDSLTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHT 614
           G+ + +A  +    +   + T
Sbjct: 575 GVPRAVAEAVQRKLNPQETET 595


>gi|229529698|ref|ZP_04419088.1| excinuclease ABC subunit C [Vibrio cholerae 12129(1)]
 gi|229333472|gb|EEN98958.1| excinuclease ABC subunit C [Vibrio cholerae 12129(1)]
          Length = 588

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 203/607 (33%), Positives = 319/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y E VH  + FL G
Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            ++ +   +   M QA+ +  +E A   RD++ A+  +Q       +    +D       
Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306
             +ACI       G+  G+ + F K  S+++  ++   FL Q+Y      +  P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
               EET  L+ +  +  G KV   V   G + + ++ +  NA  + T K++ +++    
Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLSNTNASTALTTKINHKMTISQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K   ++  +  I  R+E +D SH MG S +   VV  + G +K +YR++N+    +   
Sbjct: 360 FKALQEELGMDSIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TSITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+S+ +                    PD++ +DGGKGQL+ A  ++  
Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +      II IAKG  R  G+E      G+   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|138896241|ref|YP_001126694.1| excinuclease ABC subunit C [Geobacillus thermodenitrificans NG80-2]
 gi|134267754|gb|ABO67949.1| Excinuclease ABC, subunit C [Geobacillus thermodenitrificans
           NG80-2]
          Length = 592

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 299/613 (48%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y M D  G V+YVGKA +L+ R++SY     H  +   ++ +I +  + VT +
Sbjct: 14  LPEQPGCYLMKDKHGTVIYVGKAKSLKARVRSYFTGT-HEGKTQRLVEEIADFEYIVTSS 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EAL+LE N+IK+  P++N++L+ D+S+P+I IT   K P L   R      G YFGP+
Sbjct: 73  NAEALILEMNLIKKHDPKYNVMLKGDESYPFIKIT-AEKHPRLLITRKVKKDGGKYFGPY 131

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+       +R CL + + +C  PC   +S E+    V 
Sbjct: 132 PNVQAARETKKLLDRLYPLRKCSTLP----SRVCLYYHMGQCLAPCVYPVSDEQNKAMVE 187

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FL+GG   +K ++   M+QA    ++E A  +RD++AA+         ++N     
Sbjct: 188 QVVRFLNGGYQEVKRELTEKMHQAAEALEFERAKEYRDQIAAIEMTMEKQKIVFNDFIDR 247

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             +     +              P+ 
Sbjct: 248 DVFGYAYDKGWMCVQVFFLRQGKLIERDVSIFPLYQDPDEEMLTFLGQFYTKAHHLKPKE 307

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           ++L  + +   + E+         V +  PK+G+K+++IE A  NA              
Sbjct: 308 VVLPTDIDGELVRELL-------GVHVVQPKKGKKKELIELANKNAAIALKEKFYFIERD 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    RIE +DNS+I G   V  +VV  +    K +YRK+ + 
Sbjct: 361 EERTIKAIERLGELLGIPTPR-RIEAFDNSNIYGADPVSALVVFLDGKPAKKEYRKYKVK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  +D   MR V+ RR+++++K                   PD++I+DGGKG LSA
Sbjct: 420 T--VEGPNDYESMREVVRRRYTRVLKER--------------LPLPDLIIIDGGKGHLSA 463

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            + VL+ +L ++  + +  +AK  K     E         + L+ +    Y +QR++DE 
Sbjct: 464 VRDVLENELGLD--VPLAGLAKDEKHRTS-ELIAGDPPAVVPLDRQSQEFYLLQRIQDEV 520

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA+T HR+ R+K   +S LD+I G+G  RK+ LL  FG+VK +  ++ E L     I 
Sbjct: 521 HRFAVTFHRQTRQKTMLHSILDDIPGVGAKRKKALLNYFGSVKKMKEATVEELQRA-NIP 579

Query: 597 KKIACKIYNHFHK 609
           + +A KIY   H+
Sbjct: 580 RSVAEKIYEKLHE 592


>gi|332202493|gb|EGJ16562.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA41317]
          Length = 615

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/620 (27%), Positives = 292/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGRPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +   + 
Sbjct: 575 GVPRAVAEAVQRKLNPQETE 594


>gi|253681767|ref|ZP_04862564.1| excinuclease ABC subunit C [Clostridium botulinum D str. 1873]
 gi|253561479|gb|EES90931.1| excinuclease ABC subunit C [Clostridium botulinum D str. 1873]
          Length = 622

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 189/621 (30%), Positives = 325/621 (52%), Gaps = 19/621 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G ++YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKIIPDKPGVYLMKNSLGEIIYVGKAKVLKNRVRQYFQNSKNHSSKVKAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +PR+NILL+DDK +P+I IT     P ++  R  +     
Sbjct: 67  IITDSEMEALILECNLIKKYRPRYNILLKDDKHYPFIKITVNEDFPRIFITRIRAKDGAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+  V  + +TIN +++ F +R+C  S+  +    +PCL + IK C  PC G +S +
Sbjct: 127 YFGPYTEVAPMYETINLIKKIFPIRNCRLSIKSNSEPIKPCLNYHIKLCMAPCAGYVSKD 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y + + +    L+G ++ +  ++   M +A+ + ++E A   RD++ A+  I+      
Sbjct: 187 EYGKIIKKIIDLLNGKDNGVIYELREKMTKASEELEFEKAADIRDKILAVEKIRERQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              ++  D  ++Y +++  C Q  F   G+  G   F L          I+S F++ FY 
Sbjct: 247 AGNFDNEDFINIYSDEHDWCAQIFFVRDGKIIGREHFILDKGIFEEKKDIISNFIKDFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +   +  +  LLE     + G KV I VP +GEK+K+++    NA     + 
Sbjct: 307 GTAFIPKNIYVPDIMDVELLENWLSLKKGSKVFIKVPLKGEKKKLLDLVESNAKNTLEQF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +    +  +  IL +      L  IP RIE YD S+I G  +VG M+V  +     + 
Sbjct: 367 KLKIKVDKELYTDILGELKNLLGLEDIPNRIEAYDISNIQGVDSVGTMIVFEDGRPKNSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F +    VK  +D   M+ ++ RRF   +K  +E  N +       F  +PD++++D
Sbjct: 427 YRRFKIKT--VKGANDYDSMKEIITRRFKHGLKEIKEIQNRNLMLSGEKFSIFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL  LN+   I +  + K  K         V   + + +   + I+  I
Sbjct: 485 GGKGQVNVALEVLNDLNI--PIPVCGMVKDDKHKTRG---LVYNNKEINIKSNNKIMQLI 539

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRF+IT HR  R K+  +S L++I  IG  R++ LL+ FG++  I ++S   L
Sbjct: 540 TRIQDEVHRFSITYHRSLRNKRVLHSILEDIPNIGIKRRKELLKKFGSIDNIKKASYNEL 599

Query: 590 ASIEGISKKIACKIYNHFHKN 610
            S + I++K A  I ++F+K+
Sbjct: 600 LSTDSINEKAATSIIDYFNKH 620


>gi|90578923|ref|ZP_01234733.1| excinuclease ABC subunit C [Vibrio angustum S14]
 gi|90439756|gb|EAS64937.1| excinuclease ABC subunit C [Vibrio angustum S14]
          Length = 589

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 207/608 (34%), Positives = 326/608 (53%), Gaps = 31/608 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  +N    +   ++  I N+  TVT TE EAL+LE 
Sbjct: 1   MYDATGVVIYVGKAKDLKKRLSSYFRTNVSGEKTRALVKNICNVDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYIL++   K P L  HR     +G YFGP+    AV ++
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYILLSAS-KHPRLSIHRGVKRRKGEYFGPYPDAGAVRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C DSV+ +R+RPCL++QI RCSGPC    IS + Y + V   + FL G
Sbjct: 120 LHLMQKIFPVRQCEDSVYANRSRPCLMYQIGRCSGPCVEGLISDDDYQQQVQLVRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250
            +  +   +   M QA+   ++E A  +RD++ AL  IQ       +  D      + H+
Sbjct: 180 KDRQVISIMVEKMEQASQALEFEQAARYRDQIQALRRIQEQQFVSQDNEDDIDVIGIAHS 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306
             LACI   +   G+  G+ ++F K   ++T  ++LS F+ Q+Y      +  P  ILLS
Sbjct: 240 NGLACIHGLYIRQGKILGSRSYFPKVPVDATLTEVLSGFVTQYYFNQVEGRVIPSVILLS 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           E   EE   +  +  +  G  +      +G + + ++ A  NA  + T K++  ++ Q  
Sbjct: 300 ETLGEEGETIAKALTEMAGRTITFKYNPRGTRAQYLKLAKTNAETALTSKINHRLTIQER 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
                +   L  I  R+E +D SH MG   V   VV  + G +K +YR++N+    +   
Sbjct: 360 FFALQQALNLKPIS-RMECFDISHTMGEKTVASCVVFNQEGPLKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+S+ ++ ++                PD++ +DGG+GQLS A  V+K 
Sbjct: 417 DDYAAMAQVLERRYSKNMELDK---------------IPDIIFIDGGRGQLSTAYDVVKP 461

Query: 486 --LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  ++ +AKG  R  G+E      GE   +    P L+ IQ +RDE+H  AI+
Sbjct: 462 YIADWPKRPLLVGVAKGTTRKPGLETLIFVTGEEFSMPSDSPALHLIQHIRDESHNHAIS 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+++ GIGP R++ LL+  G ++ + ++S E +A + GIS  +A K
Sbjct: 522 GHRAQRAKVRKRSSLEDVEGIGPKRRQALLKYMGGMQELKKASKEEIAKVPGISPALAEK 581

Query: 603 IYNHFHKN 610
           I +    N
Sbjct: 582 IVDALQHN 589


>gi|114565821|ref|YP_752975.1| excinuclease ABC subunit C [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|119367856|sp|Q0B0A0|UVRC_SYNWW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|114336756|gb|ABI67604.1| Excinuclease ABC subunit C [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 601

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 198/615 (32%), Positives = 311/615 (50%), Gaps = 29/615 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            +++P  PGVY   +  G+VLYVGKA  L++R++SY  +      ++  M++ +++  F 
Sbjct: 10  LKKVPLQPGVYLFKNQEGQVLYVGKARVLRQRMRSYFQAPERMHPKVKAMMAWVSDFDFI 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +E+EAL+LE N+IK  KPR+NI LRDDKS+PYI +T   K P +Y  R+       Y
Sbjct: 70  VTHSEMEALILENNLIKSYKPRYNIDLRDDKSYPYIKVTVADKFPRVYLAREKKDGVSRY 129

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V ++  T+  L   F LRSC     + R RPCL   + +C  PC+GEIS E+Y 
Sbjct: 130 FGPYTDVTSLRDTLKLLNGVFGLRSC--RTMKSRRRPCLNRDMGKCLSPCSGEISEEEYS 187

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V     FL G    +  +  + M  A    ++E A   RD++ +L  +          
Sbjct: 188 QKVQALITFLEGDFQEIVREKEKEMAMAARSLEFEKAARLRDQIQSLRQLGEKQKIELAS 247

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D   +   +    +       G+  G  TF+LK   +    + + +F++ +Y + P
Sbjct: 248 PYELDLVGMLSGEKENLVLVFKVRSGKIVGKDTFWLKRPIQEDENEAMEFFIKHYYDENP 307

Query: 299 -CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  ILLS    E+ L+E     +  ++V++ VP++GEK++++   L NA     +K  
Sbjct: 308 DIPPEILLSHLPSESKLVEAWLKSRVSHRVELRVPQRGEKKQVLNMLLENARLLLEEKQR 367

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            E      L    +   L  +P R+E +D SH+ G   V  MVV       K  YR F +
Sbjct: 368 EENKQLAALSHLARVLDLEVVPNRLECFDVSHLAGEETVASMVVFVGGQPEKKAYRHFKI 427

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   +D A +   + RR     +              +F   PD++++DGG GQ++
Sbjct: 428 RTQQ---NNDTASLAETVRRRLENARQ-----------ANPAFLPEPDLILVDGGLGQVN 473

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A   VL+++N++  I + ++A         E +   K + LVL  RD  L  +QRLRDEA
Sbjct: 474 AVAAVLQEMNLD--IPLFALA-----EKNEEIYRPGKSQPLVLAARDNGLQLLQRLRDEA 526

Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI  +RKRR KK   S LDEI GIG  RK+ LL  F +V  I  +S + +A++ G++
Sbjct: 527 HRFAIEYNRKRRAKKIRSSALDEIPGIGKQRKKNLLVHFTSVAKIKEASLDEIAAVPGMN 586

Query: 597 KKIACKIYNHFHKNT 611
           +K A  +   FH   
Sbjct: 587 RKAALAVIEFFHNQD 601


>gi|323351458|ref|ZP_08087114.1| excinuclease ABC subunit C [Streptococcus sanguinis VMC66]
 gi|322122682|gb|EFX94393.1| excinuclease ABC subunit C [Streptococcus sanguinis VMC66]
          Length = 611

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 173/622 (27%), Positives = 294/622 (47%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  I   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAIVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNIAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +  T    
Sbjct: 575 GVPRAVAEAVREKLNPKTQEQE 596


>gi|317506092|ref|ZP_07963917.1| excinuclease ABC [Segniliparus rugosus ATCC BAA-974]
 gi|316255591|gb|EFV14836.1| excinuclease ABC [Segniliparus rugosus ATCC BAA-974]
          Length = 671

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 187/646 (28%), Positives = 305/646 (47%), Gaps = 49/646 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
           ++  +P  PGVY+  D  G+V+YVGKA NL+ R+ +Y         R   M++  + + +
Sbjct: 28  AAGTIPTEPGVYRFRDPDGQVVYVGKAKNLRARLSNYFQDLYALAPRTRQMVTTASTVEW 87

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE N IK   PRFN+  RDDKS+P + ++   + P L+ +R +      
Sbjct: 88  TVVATEVEALQLEFNWIKEFDPRFNVRYRDDKSYPMLAVSLNEEYPRLFVYRGARRKGVR 147

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP++   A+  T++ L + F  R+C++ VF+      RPCLL  I +C+ PC G +S+
Sbjct: 148 YFGPYSHAWAIRNTVDLLTKVFPARTCSNGVFKRHGQIGRPCLLGYIGKCAAPCVGRVSA 207

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           +++   V     FL+GG   L     + M  A  + D+E+A   RD LAAL     H   
Sbjct: 208 DEHRAIVESFCDFLAGGADTLVRDTRKRMLAAADELDFETAARLRDELAALDKALEHQAV 267

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA---QILSYFLR 291
           ++   +  D  +   +     +Q      G+ RG   + +      +     +++  FL 
Sbjct: 268 VFADGSDADVVAFDSDDLEVAVQVFQVREGRVRGQRGWVVDNVYGDSENAKGEMVEEFLL 327

Query: 292 QFYTD-----------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334
           QFY D                    P  IL+ E  ++   +     +  G  V + VP++
Sbjct: 328 QFYGDLAEYAAATDRFGRSARFVAAPREILVPELPDDVKGVTTWLSELRGSAVALRVPQR 387

Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHI 390
           G+KRK++E    NAH +  Q               L++  +   LP  P R+E  D SH+
Sbjct: 388 GDKRKLMETVARNAHEALAQHKLRRSGDFTERSAALQEIYEALDLPAPPIRMECVDISHV 447

Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHP-NDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
            G   V  +VV  +    K  YR + +   + V   DD   +  V+ RRF+     +   
Sbjct: 448 QGTDVVASLVVFDDGLPKKADYRHYTIKGADGVVGNDDTGNIAEVVRRRFAHRQSEK--- 504

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                         P ++++DGG+ Q+ AA   L +    + I ++ IAK  +     E 
Sbjct: 505 -------GSDSRPDPGLLVIDGGQPQVRAAFEALVEAGASD-IPVVGIAKRLE-----EL 551

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRK 568
           +   + + ++L  R P L+ +QR+RDEAHRFAI  HR +R K    S LDE+ G+G  R+
Sbjct: 552 WLSDEDDPVILPRRSPGLFLLQRIRDEAHRFAIGHHRSKRSKRMTASALDEVKGLGEHRR 611

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             L++ FG+V+ +S +S E + ++ G    +A  +     K    T
Sbjct: 612 AQLVKHFGSVRKLSAASAEEIVALPGFGPVLAASVVAALRKAEPST 657


>gi|237649860|ref|ZP_04524112.1| excinuclease ABC subunit C [Streptococcus pneumoniae CCRI 1974]
 gi|237821277|ref|ZP_04597122.1| excinuclease ABC subunit C [Streptococcus pneumoniae CCRI 1974M2]
          Length = 614

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 292/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRAVAEAVQRKLNPQGEALP 596


>gi|331266838|ref|YP_004326468.1| excinuclease, subunit C [Streptococcus oralis Uo5]
 gi|326683510|emb|CBZ01128.1| excinuclease, subunit C [Streptococcus oralis Uo5]
          Length = 615

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/618 (27%), Positives = 289/618 (46%), Gaps = 41/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKEDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRE--------------SLTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNT 611
           G+ K +A  +    +   
Sbjct: 575 GVPKAVAEAVQRKLNPQE 592


>gi|196250198|ref|ZP_03148892.1| excinuclease ABC, C subunit [Geobacillus sp. G11MC16]
 gi|196210382|gb|EDY05147.1| excinuclease ABC, C subunit [Geobacillus sp. G11MC16]
          Length = 590

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 299/613 (48%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y M D  G V+YVGKA +L+ R++SY     H  +   ++ +I +  + VT +
Sbjct: 12  LPEQPGCYLMKDKHGTVIYVGKAKSLKARVRSYFTGT-HEGKTQRLVEEIADFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EAL+LE N+IK+  P++N++L+ D+S+P+I IT   K P L   R      G YFGP+
Sbjct: 71  NAEALILEMNLIKKHDPKYNVMLKGDESYPFIKIT-AEKHPRLLITRKVKKDGGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+       +R CL + + +C  PC   +S E+    V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCSTLP----SRVCLYYHMGQCLAPCVYPVSDEQNKAMVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FL+GG   +K ++   M+QA    ++E A  +RD++AA+         ++N     
Sbjct: 186 QVVRFLNGGYQEVKRELTEKMHQAAEALEFERAKEYRDQIAAIEMTMEKQKIVFNDFIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             +     +              P+ 
Sbjct: 246 DVFGYAYDKGWMCVQVFFLRQGKLIERDVSIFPLYQDPDEEMLTFLGQFYTKAHHLKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           ++L  + +   + E+         V +  PK+G+K+++IE A  NA              
Sbjct: 306 VVLPTDIDGELVRELL-------GVHVVQPKKGKKKELIELANKNAAIALKEKFYFIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    RIE +DNS+I G   V  +VV  +    K +YRK+ + 
Sbjct: 359 EERTIKAIERLGELLGIPTPR-RIEAFDNSNIYGADPVSALVVFLDGKPAKKEYRKYKVK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  +D   MR V+ RR+++++K                   PD++I+DGGKG LSA
Sbjct: 418 T--VEGPNDYESMREVVRRRYTRVLKER--------------LPLPDLIIIDGGKGHLSA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            + VL+ +L ++  + +  +AK  K     E         + L+ +    Y +QR++DE 
Sbjct: 462 VRDVLENELGLD--VPLAGLAKDEKHRTS-ELIAGDPPAVVPLDRQSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA+T HR+ R+K   +S LD+I G+G  RK+ LL  FG+VK +  ++ E L     I 
Sbjct: 519 HRFAVTFHRQTRQKTMLHSILDDIPGVGAKRKKALLNYFGSVKKMKEATVEELQRA-NIP 577

Query: 597 KKIACKIYNHFHK 609
           + +A KIY   H+
Sbjct: 578 RSVAEKIYEKLHE 590


>gi|270293181|ref|ZP_06199392.1| excinuclease ABC, subunit C [Streptococcus sp. M143]
 gi|270279160|gb|EFA25006.1| excinuclease ABC, subunit C [Streptococcus sp. M143]
          Length = 615

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 166/616 (26%), Positives = 289/616 (46%), Gaps = 41/616 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +R+ + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRNLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHK 609
           G+ + +A  +    + 
Sbjct: 575 GVPRTVAEAVQRKLNP 590


>gi|254423285|ref|ZP_05037003.1| excinuclease ABC, C subunit [Synechococcus sp. PCC 7335]
 gi|196190774|gb|EDX85738.1| excinuclease ABC, C subunit [Synechococcus sp. PCC 7335]
          Length = 631

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 201/623 (32%), Positives = 318/623 (51%), Gaps = 28/623 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--SNNHTHRITHMISQINNIRF 60
            +++P+ PGVY M D   ++LY+GK+ +L+ R++SY    +++HT RI  M+ ++ +I  
Sbjct: 23  LKEIPQEPGVYYMKDETDQILYIGKSKSLRNRVRSYFREGAHHHTPRIATMVQKVADIEI 82

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QG 119
            VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R      + 
Sbjct: 83  IVTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEDYPRIFITRQRRKNAKN 142

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+    ++ +T+   +R F LR     +F  + RPCL + I +C G C   I+ E 
Sbjct: 143 RYYGPYVDTGSLRRTLQIAKRVFPLRQRKQPLF--KDRPCLNYDIGQCPGVCQQLITPED 200

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + V        G +H L + +   M +A    D+E A I RD++  L  +  +     
Sbjct: 201 YHKIVQRVAMVFQGRSHELIDMLNAKMEKAAEALDFEKAAIIRDQIKGLETLGANQKVAL 260

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY- 294
                  D  +L  +   ACIQ      G+  G   F  + +S  T  +IL   L + Y 
Sbjct: 261 PESTVSRDAIALSGDDQHACIQLFQIRAGRLVGRLGFVAEAESG-TPGEILQRVLEEHYR 319

Query: 295 --TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  IL      +  +L      Q G KV I VP++  K +++E    NA    
Sbjct: 320 LVDPVEIPTEILSQHPLPDGDMLSDFLSAQKGRKVSIEVPQRQVKAELVEMVERNAQYEL 379

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +       +   ++D  +   LP  PKRIE YD SHI G  AV   VV  +    K  Y
Sbjct: 380 ARTQRFADRNTQAMQDLAEIVDLPGPPKRIEGYDISHIQGSDAVASQVVFVDGLPAKQHY 439

Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           R + +    V +    D A M  V+ RRF +  ++       P  Q    P WPD+V++D
Sbjct: 440 RTYKIKNPTVTSGHSDDFASMAEVIHRRFRRYAED-------PNLQRLGNPDWPDLVMID 492

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLSA    L+ +N+ + + ++S+AK  +     E F   + ++L      P +  +
Sbjct: 493 GGKGQLSAVVAQLQDMNLLSELRVVSLAKRHE-----EIFLPGEKQSLETEADQPGVMLL 547

Query: 531 QRLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           +RLRDEAHRFA++ H +KR  +   S L++I G+G  R++ LL SF ++  I  +SP+ L
Sbjct: 548 RRLRDEAHRFAVSFHRKKRMTRMRRSRLEDIPGLGHNRRKQLLASFRSIDYIREASPKQL 607

Query: 590 ASIEGISKKIACKIYNHFHKNTS 612
           AS++GI  ++A +IY +FH + +
Sbjct: 608 ASVDGIGPQLAKQIYEYFHPSAA 630


>gi|257068680|ref|YP_003154935.1| Excinuclease ABC subunit C [Brachybacterium faecium DSM 4810]
 gi|256559498|gb|ACU85345.1| Excinuclease ABC subunit C [Brachybacterium faecium DSM 4810]
          Length = 650

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 187/605 (30%), Positives = 291/605 (48%), Gaps = 28/605 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL++R+ +Y    +    R   M++   ++ +TV 
Sbjct: 13  TIPTRPGVYRFRDEHGRVIYVGKAKNLRQRLVNYFQDLSVLHERTRRMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+PY+++T   K+P ++  R         FG
Sbjct: 73  GTEVEALTLEYTWIKEFDPRFNVKFRDDKSYPYLVLTMGEKVPRVHITRRPRAKGDRTFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+  V A+ +T++ + R F +RSC   V+R      RPCLL  I +C+ PC G+IS E++
Sbjct: 133 PYPQVGAIRETLDLMLRVFPIRSCTAGVYRRAERSGRPCLLGFIGKCAAPCVGDISEEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F++G       +I + M  A    DYE+A   RD L AL  +   N  +  
Sbjct: 193 RRLAEQFADFMAGNTSKYTRRIEQRMKAAAAAMDYETAAGLRDDLQALEKVMEKNSVVLS 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D   L  ++  A +Q      G+ RG   +  +   +S+   ++   +   Y + 
Sbjct: 253 DATDADLIGLAQDELEASVQVFHVRGGRIRGQRGWTAEILDDSSGPDLIERAMTTLYAEG 312

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  +L+               +  G  V + VP++GEK+ ++     NA  +      
Sbjct: 313 EAPREVLVPILPTNRE----QVLQMMGRTVDLRVPQRGEKKDLLRTVGENATEALRLHRL 368

Query: 358 TE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
                  +    L+D  +   L   P RIE +D SH  G + VG  VV  +    K++YR
Sbjct: 369 KRTGDLTARTKALEDLGEALELAEPPLRIECFDISHSHGTNVVGSQVVFEDGLPKKSEYR 428

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++++       +DD A M  V+ RR    +    +     ++    F   P ++++DGG 
Sbjct: 429 RYSVSGA--AARDDTASMYDVISRRLKHHL----DPPEQSEEDRRRFAYPPSLILVDGGP 482

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q++AAQ     L + + I +  IAK  +     E +       ++L      L+ +QRL
Sbjct: 483 PQVAAAQRAFDDLGITD-IALAGIAKRLE-----EIWLPGDDYPVILPRTSEALFLVQRL 536

Query: 534 RDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT HR +R +A   S LD I G+GP R+R LL  F TV  I  +S E L  +
Sbjct: 537 RDEAHRFAITYHRSKRGRAMQASALDGIPGLGPARRRALLDRFVTVSAIRAASEEELVEV 596

Query: 593 EGISK 597
           +GI  
Sbjct: 597 DGIGP 601


>gi|225858452|ref|YP_002739962.1| excinuclease ABC subunit C [Streptococcus pneumoniae 70585]
 gi|254764945|sp|C1C5Y6|UVRC_STRP7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|225720481|gb|ACO16335.1| excinuclease ABC, C subunit [Streptococcus pneumoniae 70585]
          Length = 614

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 170/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGHDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEAHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596


>gi|324992798|gb|EGC24718.1| excinuclease ABC subunit C [Streptococcus sanguinis SK405]
 gi|327460235|gb|EGF06572.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1057]
          Length = 611

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 170/622 (27%), Positives = 293/622 (47%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQTMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++   +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQD-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  ++ + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEATVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +  T    
Sbjct: 575 GVPRAVAEAVREKLNPKTQEQE 596


>gi|306825698|ref|ZP_07459037.1| excision endonuclease subunit UvrC [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432059|gb|EFM35036.1| excision endonuclease subunit UvrC [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 607

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 167/618 (27%), Positives = 290/618 (46%), Gaps = 41/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M +A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMVKAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ ++ ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDQEAVKALVDTKIVK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ ++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVGV- 574

Query: 594 GISKKIACKIYNHFHKNT 611
           G+ + +A  +    +   
Sbjct: 575 GVPRAVAEAVQRKLNPQE 592


>gi|149021578|ref|ZP_01835633.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP23-BS72]
 gi|147930274|gb|EDK81259.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP23-BS72]
          Length = 614

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596


>gi|15602722|ref|NP_245794.1| excinuclease ABC subunit C [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721167|gb|AAK02941.1| UvrC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 611

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 209/617 (33%), Positives = 342/617 (55%), Gaps = 32/617 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+M D    V+YVGKA +L+KR+ SY  ++  + +   ++S I  I  T+T 
Sbjct: 13  NVSHDAGVYRMYDEKDTVIYVGKAKDLKKRLSSYFRTHLSSKKTEALVSAIARIDTTITS 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +PR+N+LLRDDKS+PYIL+T   + P +  +R S  I+G YFGP
Sbjct: 73  SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-AERHPRISAYRGSKKIKGEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           +    AV +T++ LQ+ F +R C ++V+ +R+RPCL +QI RC+ PC    ++ E Y++ 
Sbjct: 132 YPHASAVRETLSLLQKLFPIRQCENAVYNNRSRPCLQYQIGRCAAPCVAGYVTDEAYLQQ 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V  A+ FL G +  + E +   M QA+L  D+E A   RD++ A+  +           +
Sbjct: 192 VELARLFLQGKDQQVLEHLIHKMEQASLALDFEEAARIRDQIQAVRAVMEKQFVSTERLD 251

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            MD  S+ +   +AC+Q  F   G+  G  ++F K  + +T +++ + F+ QFY      
Sbjct: 252 DMDILSIAYQLGIACVQVLFIRQGKMLGNRSYFPKVPANTTLSELTATFVGQFYLQAHQG 311

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  I++  +  E + LE    +Q G KV I    +GEK K ++ A +NA  +   +L
Sbjct: 312 RSIPHRIIVDHKLSEKTELEELLTQQAGRKVHIQDNTKGEKSKYLQLAKMNAQSALVTQL 371

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                 +   +       L    +R+E +D SH MG   +   VV  ++G +K+ YR+FN
Sbjct: 372 KQSTLLKERYQALQAILQL-GEIRRMECFDISHTMGEQTIASCVVFNQDGPLKSDYRRFN 430

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M   L +R+ + ++ E+                PDV+ +DGGKGQL
Sbjct: 431 I--TGITAGDDYAAMEQALLKRYDKPLEQEK---------------IPDVIFIDGGKGQL 473

Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQR 532
           + A     KLNV   +N+  +I +AKG  R AG+E   + K+G+ L L      L+ IQ 
Sbjct: 474 NRALQTFSKLNVKWDKNQPHLIGVAKGIDRKAGLETLILSKQGKILHLPSDHLALHLIQH 533

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H+ AI+ HRK+R++A   S L+ + G+G  R++ LL+  G ++ + +++ + +AS
Sbjct: 534 IRDESHQHAISGHRKKRQQAFLQSGLESVEGVGAKRRQTLLKYLGGMQGVKKATLDEIAS 593

Query: 592 IEGISKKIACKIYNHFH 608
           + GISK +A +IY+   
Sbjct: 594 VPGISKALAERIYDALR 610


>gi|145295713|ref|YP_001138534.1| excinuclease ABC subunit C [Corynebacterium glutamicum R]
 gi|189038043|sp|A4QEG6|UVRC_CORGB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|140845633|dbj|BAF54632.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 696

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 183/689 (26%), Positives = 298/689 (43%), Gaps = 89/689 (12%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D   RV+YVGKA NL+ R+ +Y         R   M+   +++ +TV 
Sbjct: 13  TIPTEPGVYKFRDENRRVIYVGKAKNLRSRLSNYFQDVTQLHPRTRQMVFAASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IKR  PRFN+  RDDK++P + ++   + P  +  R        YFG
Sbjct: 73  SSEVEALQLEYTWIKRFDPRFNVKYRDDKTYPMLAVSTGERFPRAFFFRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV +T++ L R F +R+C+  VF       RPCLL  I +C+ PC G +S E++
Sbjct: 133 PYSHAWAVRETLDLLTRVFPMRTCSKGVFNRHESLGRPCLLGYIDKCAAPCVGRVSEEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V     F++G    +  K+  +M  A  + D+E A   RD L A+  +      +  
Sbjct: 193 REIVDGFTSFMAGHTDKVTRKLNADMMAAAEELDFERAARLRDDLEAIDKVMEKQAVVLG 252

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTF-----------------FLKTDSES 280
                D  +   ++  A +Q      G+ RG   +                   + D+  
Sbjct: 253 DGTDADIIAFATDQLEAAVQVFNIRGGRIRGQRGWVVDKPGDYAGLLVDATTQPEGDAPE 312

Query: 281 TNAQI---LSYFLRQFYTDKP-----------------------------------CPEN 302
           T+  +   +  FL QFY D                                      P  
Sbjct: 313 TDPALPFLMQDFLVQFYGDAVERAETEAKEDAAVIERRGVDKHSFEEAAPVTRASVVPRE 372

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE--- 359
           IL+     E         +  G  V   VP++G+KR ++E    NA     Q        
Sbjct: 373 ILVQVAPNEAEQTLKVLEELRGAGVDARVPQRGDKRALMETVERNAKELLKQHKLKRVGD 432

Query: 360 -ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +    L++  +   +   P RIE  D SHI G   V  +VV  +    K+ YR++ + 
Sbjct: 433 LTARSAALQELQEALDMEQAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRVK 492

Query: 419 PNDVKTQ-DDCAMMRMVLERRFSQLIKNE---------------ENLNFHPKKQEYSFPS 462
                   +D A +  +  RRF +  +++               +            F  
Sbjct: 493 EAAGDGHSNDVASIAEITRRRFLRHNQDKLAVPEAEEFDGSTFSDEKVEEMSTDARRFAY 552

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            P + I+DGG  Q++AAQ V  +L + + + +I +AK  +     E +     + ++L  
Sbjct: 553 PPQIFIVDGGAPQVAAAQEVFDELGIVDVV-LIGLAKRLE-----EIWLPGDPDPVILPR 606

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581
               L+ +Q++RDEAHRFAIT HR++R K    S LD I G+G  R+  L++ FG+V  +
Sbjct: 607 NSQALFLLQQIRDEAHRFAITYHRQQRSKRMRVSELDSIKGLGQSRRTELVKHFGSVAKL 666

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKN 610
             +S E ++ ++G   K+A  +Y   H +
Sbjct: 667 KEASVEDISQVKGFGPKLAEAVYEGLHAS 695


>gi|288553651|ref|YP_003425586.1| excinuclease ABC subunit C [Bacillus pseudofirmus OF4]
 gi|288544811|gb|ADC48694.1| excinuclease ABC subunit C [Bacillus pseudofirmus OF4]
          Length = 596

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 185/614 (30%), Positives = 298/614 (48%), Gaps = 41/614 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   + H  +   ++S+I +  + +T +
Sbjct: 16  LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVSEIVDFEYIMTSS 74

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDKS+PY+ IT   + P L   R+     G YFGP+
Sbjct: 75  NIEALILEMNLIKKHDPKYNVMLKDDKSYPYLKIT-SEEHPRLITTRNIKKDGGKYFGPY 133

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +T   L R + LR C         + CL + I +C  PC  E++ E+  E V 
Sbjct: 134 PNAGAANETKKLLDRLYPLRKCRTMP----DKVCLYYHIGQCLAPCVYEVTKEQNQEMVQ 189

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E  KFL  G+  +KE +   M +A+ + ++E A   RD L  +  ++       N     
Sbjct: 190 EITKFLRSGHDEIKEDLTEKMMKASEELNFERAKELRDLLQHMDQVREKQKMTINDHINR 249

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             E+ +  +          D   P  
Sbjct: 250 DVFGFAYDKGWMCVQVFFIRQGKLIERDVSIFPFYKEAKDDLLTFVGQFYLQKDHIKPAE 309

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           ILL EE +   + ++   K          PK+G+K+++++ A  NA        +     
Sbjct: 310 ILLPEEVDRELVEQLLEVKT-------AHPKRGKKKELLDLANQNASFALKEKFSLIERD 362

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +     RIE +DNS+I G   V  MV   +    +  YRK+ + 
Sbjct: 363 EDRTIKAVERLGEAMGIATP-YRIEAFDNSNIQGTDPVSAMVTFLDGKPSRKDYRKYKIK 421

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V++RR+ +L++ E  L              PD++++DGGKGQ++A
Sbjct: 422 T--VTGPDDYGSMREVVKRRYVRLLQEERPL--------------PDLIVIDGGKGQIAA 465

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           AQ V++   +   I +  +AK  K               + L       Y +QR++DE H
Sbjct: 466 AQEVIED-ELGLFIPVCGLAKDEKHRTSQ-LLMGDPPVVIPLKRDSHEFYLLQRIQDEVH 523

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K  + S LDEI G+G  RKR LL+ FG+V+ +  ++ E LA +EG+ K
Sbjct: 524 RFAITFHRQTRSKTFFQSVLDEIPGVGEKRKRQLLKHFGSVRKMKEATIEELA-VEGVPK 582

Query: 598 KIACKIYNHFHKNT 611
            +A  IY   H+  
Sbjct: 583 NVAEAIYEKLHEKD 596


>gi|307155174|ref|YP_003890558.1| excinuclease ABC subunit C [Cyanothece sp. PCC 7822]
 gi|306985402|gb|ADN17283.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 7822]
          Length = 631

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 192/626 (30%), Positives = 308/626 (49%), Gaps = 29/626 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61
            +++P  PGVY M D  G +LY+GK+  L+ R++SY  +    + R+  M+ Q+ +I F 
Sbjct: 15  LKEIPLEPGVYFMRDKNGDILYIGKSKKLRSRVRSYFRNFPVLSPRLALMVQQVADIEFI 74

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119
           VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R       + 
Sbjct: 75  VTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFITRKRRLDNEKD 134

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+     +  T++ ++R F LR     +F  + RPCL + I RC G C   ISS++
Sbjct: 135 RYYGPYVDTGLLRYTLSIIKRIFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQLLISSQE 192

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + V +      G    L   + + M +A    ++E A + RD++ AL  + +      
Sbjct: 193 YHKTVQQVAMIFQGRTGELIHTLQKQMEEAANGLNFEKAAVIRDQIKALESLFSEQKVAL 252

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL------SYF 289
                  D  +   +    CIQ      G+  G   FF+                     
Sbjct: 253 PDDTVSRDVIAGAADGQHCCIQLFQIRAGRLVGRLGFFVDIKQPDETVTQTDQGAILQRV 312

Query: 290 LRQFY---TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
           L + Y        P  ILL     +   L+    ++ G KV + VP++  K ++IE    
Sbjct: 313 LEEHYWLADPVEIPSEILLQYPLSDQESLKKWLSERKGKKVNLIVPQRQTKAELIEMVQR 372

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA     +       +   ++D      L  +PKRIE YD SHI G +AV   VV  +  
Sbjct: 373 NAKYELERTQRHSDRNLKAMEDLAAILDLEAVPKRIEGYDISHIQGSNAVASQVVFIDGV 432

Query: 407 FVKNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
             K  YR + +   +VK    DD A +  V+ RRF +     +  +      +      P
Sbjct: 433 AAKQHYRHYKIKNPEVKIGHSDDFASLAEVIRRRFRKY---SQKTSPPTPFLQGEGSDLP 489

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGGKGQLSA   VL++LN+ + + ++S+AK  +     E F   + E L  +   
Sbjct: 490 DLIMIDGGKGQLSAVVEVLQELNLLSELRVVSLAKQRE-----EIFLPGESEPLATDAEQ 544

Query: 525 PILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           P +  ++R+RDEAHRFA++ HR++R   +  S LDEI G+G  R++ LL  F +V  I +
Sbjct: 545 PGVQLLRRVRDEAHRFAVSFHRQQRITHSRRSRLDEIPGLGFGRQKQLLAHFHSVDYIRQ 604

Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609
           ++   L  + GI +++A +IYN+FH 
Sbjct: 605 ATVSQLMEVSGIGEQLAQEIYNYFHP 630


>gi|325690624|gb|EGD32627.1| excinuclease ABC subunit C [Streptococcus sanguinis SK115]
          Length = 611

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 171/620 (27%), Positives = 294/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  + +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYHVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VIGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +  T  
Sbjct: 575 GVPRAVAEAVREKLNPKTQE 594


>gi|15900526|ref|NP_345130.1| excinuclease ABC subunit C [Streptococcus pneumoniae TIGR4]
 gi|24212615|sp|Q97S07|UVRC_STRPN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|14972094|gb|AAK74770.1| excinuclease ABC, subunit C [Streptococcus pneumoniae TIGR4]
          Length = 614

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 290/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596


>gi|19552804|ref|NP_600806.1| excinuclease ABC subunit C [Corynebacterium glutamicum ATCC 13032]
 gi|62390474|ref|YP_225876.1| excinuclease ABC subunit C [Corynebacterium glutamicum ATCC 13032]
 gi|81760667|sp|Q8NQ55|UVRC_CORGL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|21324361|dbj|BAB98985.1| Nuclease subunit of the excinuclease complex [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325811|emb|CAF21600.1| Nuclease subunit of the excinuclease ABC complex [Corynebacterium
           glutamicum ATCC 13032]
          Length = 696

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 183/689 (26%), Positives = 298/689 (43%), Gaps = 89/689 (12%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D   RV+YVGKA NL+ R+ +Y         R   M+   +++ +TV 
Sbjct: 13  TIPTEPGVYKFRDENRRVIYVGKAKNLRSRLSNYFQDVTQLHPRTRQMVFAASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IKR  PRFN+  RDDK++P + ++   + P  +  R        YFG
Sbjct: 73  SSEVEALQLEYTWIKRFDPRFNVKYRDDKTYPMLAVSTGERFPRAFFFRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV +T++ L R F +R+C+  VF       RPCLL  I +C+ PC G +S E++
Sbjct: 133 PYSHAWAVRETLDLLTRVFPMRTCSKGVFNRHESLGRPCLLGYIDKCAAPCVGRVSEEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V     F++G    +  K+  +M  A  + D+E A   RD L A+  +      +  
Sbjct: 193 REIVDGFTSFMAGHTDKVTRKLNADMMAAAEELDFERAARLRDDLEAIDKVMEKQAVVLG 252

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTF-----------------FLKTDSES 280
                D  +   ++  A +Q      G+ RG   +                   + D+  
Sbjct: 253 DGTDADIIAFATDQLEAAVQVFNIRGGRIRGQRGWVVEKPGDYAGLLVDATTQPEGDAPE 312

Query: 281 TNAQI---LSYFLRQFYTDKP-----------------------------------CPEN 302
           T+  +   +  FL QFY D                                      P  
Sbjct: 313 TDPALPFLMQDFLVQFYGDAVERAETEAKEDAAVIERRGVDKHSFEEAAPVTRASVVPRE 372

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE--- 359
           IL+     E         +  G  V   VP++G+KR ++E    NA     Q        
Sbjct: 373 ILVQVAPNEAEQTLKVLEELRGAGVDARVPQRGDKRALMETVERNAKELLKQHKLKRVGD 432

Query: 360 -ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +    L++  +   +   P RIE  D SHI G   V  +VV  +    K+ YR++ + 
Sbjct: 433 LTARSAALQELQEALDMEQAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRVK 492

Query: 419 PNDVKTQ-DDCAMMRMVLERRFSQLIKNE---------------ENLNFHPKKQEYSFPS 462
                   +D A +  +  RRF +  +++               +            F  
Sbjct: 493 EAAGDGHSNDVASIAEITRRRFLRHNQDKLAVPEAEEFDGSTFSDEKVEEMSTDARRFAY 552

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            P + I+DGG  Q++AAQ V  +L + + + +I +AK  +     E +     + ++L  
Sbjct: 553 PPQIFIVDGGAPQVAAAQEVFDELGIVDVV-LIGLAKRLE-----EIWLPGDPDPVILPR 606

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581
               L+ +Q++RDEAHRFAIT HR++R K    S LD I G+G  R+  L++ FG+V  +
Sbjct: 607 NSQALFLLQQIRDEAHRFAITYHRQQRSKRMRVSELDSIKGLGQSRRTELVKHFGSVAKL 666

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKN 610
             +S E ++ ++G   K+A  +Y   H +
Sbjct: 667 KEASVEDISQVKGFGPKLAEAVYEGLHAS 695


>gi|28212079|ref|NP_783023.1| excinuclease ABC subunit C [Clostridium tetani E88]
 gi|32130290|sp|Q890Y5|UVRC_CLOTE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|28204522|gb|AAO36960.1| excinuclease ABC subunit C [Clostridium tetani E88]
          Length = 622

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 197/622 (31%), Positives = 326/622 (52%), Gaps = 19/622 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +PE PGVY M + +  V+YVGKA  L+ R+K Y   S NH+ ++  M+S I    +
Sbjct: 7   QLKVLPEKPGVYLMKNSSDEVIYVGKAKILKNRVKQYFQQSKNHSEKVRVMVSNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +P++NILL+DDK +PYI IT     P ++  R  +     
Sbjct: 67  IITDSEMEALILECNLIKKYRPKYNILLKDDKGYPYIKITINEDFPRVFISRTIAKDGSR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD--SVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    AV +TI  +++ F +RSC       +  TRPCL + IK CS PC   IS +
Sbjct: 127 YFGPYTDYSAVRETIELIKKIFPIRSCKRYIRDGQKPTRPCLNYHIKLCSAPCGAHISKQ 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y   +++  + LSG + ++ +K+   M +A+    +E A   RD++ A+  I      I
Sbjct: 187 GYALIINDIVQLLSGKDKDILDKLKNQMEEASNSLQFEKAASLRDKIFAVKKITEKQKII 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++  ++  +C+Q  F   G+  G   F L+  S+    +I++ F++ FY 
Sbjct: 247 MGSFQNEDYINIAKDEKDSCVQVFFVREGKIIGREHFILEYTSDEREYKIIAEFIKDFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +   + E+  LLE     + G KV+I VPK+GEK +++     NA     + 
Sbjct: 307 GAAFVPKTVYVPDIEDKYLLEQWLTIRRGSKVEIKVPKRGEKIELLNLVKKNAKLTLEQF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  +  +++ L + +       +P RIE YD S+I G  +VG MVV  +    K+ 
Sbjct: 367 KIKYLQDKALYEVALAELSDILGFDDMPNRIEAYDISNIQGVDSVGSMVVFEKGRSKKSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F +    V+  +D   MR +L RRF + I+  ++    + +     F  +PD++++D
Sbjct: 427 YRRFKIKT--VEGANDYHSMREILRRRFQRGIEEIQQIQKRNLEFSSGKFSVFPDLILID 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKG ++ A  VLK+LN+E  I +  + K    +      +    + + L+     +  I
Sbjct: 485 GGKGHVNIALEVLKELNIE--IPVAGMVKDDSHTTRG-IIYNNIEKDISLDSN--AMKLI 539

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAI+ HR  R K+   S LD+I  IG +RK+ LL+ FG+++ I ++S + L
Sbjct: 540 TRIQDEVHRFAISYHRTLRDKRVLKSILDDIPNIGTIRKKELLKKFGSIESIKKASIDQL 599

Query: 590 ASIEGISKKIACKIYNHFHKNT 611
                I K+ A  I   F  N 
Sbjct: 600 LETPSIDKRSALSIKEFFAPNE 621


>gi|119370545|sp|P57882|UVRC_PASMU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 608

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 209/617 (33%), Positives = 342/617 (55%), Gaps = 32/617 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+M D    V+YVGKA +L+KR+ SY  ++  + +   ++S I  I  T+T 
Sbjct: 10  NVSHDAGVYRMYDEKDTVIYVGKAKDLKKRLSSYFRTHLSSKKTEALVSAIARIDTTITS 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +PR+N+LLRDDKS+PYIL+T   + P +  +R S  I+G YFGP
Sbjct: 70  SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-AERHPRISAYRGSKKIKGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           +    AV +T++ LQ+ F +R C ++V+ +R+RPCL +QI RC+ PC    ++ E Y++ 
Sbjct: 129 YPHASAVRETLSLLQKLFPIRQCENAVYNNRSRPCLQYQIGRCAAPCVAGYVTDEAYLQQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V  A+ FL G +  + E +   M QA+L  D+E A   RD++ A+  +           +
Sbjct: 189 VELARLFLQGKDQQVLEHLIHKMEQASLALDFEEAARIRDQIQAVRAVMEKQFVSTERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            MD  S+ +   +AC+Q  F   G+  G  ++F K  + +T +++ + F+ QFY      
Sbjct: 249 DMDILSIAYQLGIACVQVLFIRQGKMLGNRSYFPKVPANTTLSELTATFVGQFYLQAHQG 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  I++  +  E + LE    +Q G KV I    +GEK K ++ A +NA  +   +L
Sbjct: 309 RSIPHRIIVDHKLSEKTELEELLTQQAGRKVHIQDNTKGEKSKYLQLAKMNAQSALVTQL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                 +   +       L    +R+E +D SH MG   +   VV  ++G +K+ YR+FN
Sbjct: 369 KQSTLLKERYQALQAILQL-GEIRRMECFDISHTMGEQTIASCVVFNQDGPLKSDYRRFN 427

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M   L +R+ + ++ E+                PDV+ +DGGKGQL
Sbjct: 428 I--TGITAGDDYAAMEQALLKRYDKPLEQEK---------------IPDVIFIDGGKGQL 470

Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQR 532
           + A     KLNV   +N+  +I +AKG  R AG+E   + K+G+ L L      L+ IQ 
Sbjct: 471 NRALQTFSKLNVKWDKNQPHLIGVAKGIDRKAGLETLILSKQGKILHLPSDHLALHLIQH 530

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H+ AI+ HRK+R++A   S L+ + G+G  R++ LL+  G ++ + +++ + +AS
Sbjct: 531 IRDESHQHAISGHRKKRQQAFLQSGLESVEGVGAKRRQTLLKYLGGMQGVKKATLDEIAS 590

Query: 592 IEGISKKIACKIYNHFH 608
           + GISK +A +IY+   
Sbjct: 591 VPGISKALAERIYDALR 607


>gi|301155981|emb|CBW15451.1| excinuclease UvrABC, endonuclease subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 589

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 205/607 (33%), Positives = 334/607 (55%), Gaps = 32/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D   +V+YVGKA +L+KR+ SY   N  + +   ++S I++I  T+T +E EALLLE 
Sbjct: 1   MYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVSSIHHIDTTITSSETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R +  I G YFGP+    AV +T
Sbjct: 61  NFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGTKKIAGEYFGPYPHAGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI-SSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C +SV+ +R+RPCL +QI RCS PC  +  + E+Y + V  A+ FL G
Sbjct: 120 LSLMQKLFPVRQCENSVYNNRSRPCLQYQIGRCSAPCVPDYVTDEEYNQQVELARLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250
            +  + + +   M QA+   D+E A  +RD++ A+  +           + MD  S+ + 
Sbjct: 180 KDQQVLDYLIGKMEQASRDLDFEGAARYRDQIQAVRAVIEKQFVSNERLDDMDIMSIAYQ 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306
             LAC+Q  F   G+  G  ++F K  + +  +++ + F+ QFY      +  P +I++ 
Sbjct: 240 HGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTATFVGQFYLQGHQGRSIPNSIIVD 299

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            + +E + LE    +Q G KV I    +G+K K ++ A INA  +   +L          
Sbjct: 300 HKLDEKAELEALLTEQAGRKVVIQESAKGDKGKYLQLAQINAKAALATQLKQSSRMHERY 359

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           +   +   +P I  R+E +D SH MG   V   VV  + G +K+ YR+FN+    +   D
Sbjct: 360 QALCELLDMPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG--ITGGD 416

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A M   L++R+ + +  ++                PD++ +DGGKGQL+ A  V   L
Sbjct: 417 DYAAMEQALKKRYDRDLDEDK---------------IPDIIFIDGGKGQLNRALEVFHHL 461

Query: 487 NV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           NV   +NR  +I +AKG  R AG E   + K+   + L      L+ IQ +RDE+H  AI
Sbjct: 462 NVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRDESHNHAI 521

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           + HR++R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ + +AS+ GISK +A 
Sbjct: 522 SGHRQKRQKAFTQSGLETIEGVGAKRRQALLKYLGGLQGVKNATLDEIASVPGISKALAE 581

Query: 602 KIYNHFH 608
           KI+    
Sbjct: 582 KIFETLK 588


>gi|159027472|emb|CAO89437.1| uvrC [Microcystis aeruginosa PCC 7806]
          Length = 625

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 202/618 (32%), Positives = 314/618 (50%), Gaps = 29/618 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
           ++P  PGVY + D  G +LY+GK+  L+ R++SY   +   + RI  M+ Q+  I F VT
Sbjct: 23  EIPLEPGVYFLRDQNGEILYIGKSKKLRSRVRSYFRPSQPLSPRIALMVRQVTEIEFIVT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD--SSTIQGSY 121
            TE E+L LEAN+IK+ +P FN LL+DDK +PYI IT     P ++  R    +  +  Y
Sbjct: 83  DTEAESLALEANLIKQHQPHFNTLLKDDKKYPYICITWSETYPRIFITRKRSINNQKDRY 142

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     +  T++ ++RTF LR     +F  + RPCL + I RC G C   IS + Y 
Sbjct: 143 YGPYVDTRLLRYTLHLIKRTFPLRQRPQPLF--KDRPCLNYDIGRCPGVCQKLISPQDYR 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E + +      G    L +K+A  M  A+   D+E A   RD++  L  +          
Sbjct: 201 ETLQKVAMIFQGRTGELLDKLATKMLAASENLDFEQAATIRDQIRGLQALNTDQKVSLPD 260

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  +L  ++   CIQ      G+  G   FF  + S +   +IL   L + Y   
Sbjct: 261 DTVSRDAIALAKDEQHCCIQLFQVRSGRLVGRLGFFADSQS-ANEGEILQKVLEEHYLSV 319

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  ILL  E  E  +L     ++ G KV++TVP++  K  ++     NA     +
Sbjct: 320 EGVEIPSEILLPCELPEGEVLAGWLREKKGRKVELTVPQRQSKADLLAMVEKNALYELEK 379

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +       L+D      LP +P RIE YD SHI G +AV   VV  +       YR 
Sbjct: 380 TKRSADRDLQSLQDLAVILDLPALPHRIEGYDISHIQGSNAVASSVVFIDGVAANQHYRH 439

Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           + +   +VK    DD A +  V+ RRF +  +N +N+             +PD+V++DGG
Sbjct: 440 YKIKNPEVKIGHSDDFASLAEVIRRRFRRYAENPDNIAESD--------DFPDLVMIDGG 491

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQLSA   VL ++N+  ++ ++S+AK  +     E F   +   L  +   P +  ++R
Sbjct: 492 KGQLSAVVTVLGEMNLLEQVKVVSLAKQRE-----EIFLPGESSPLETDKEQPGVQLLRR 546

Query: 533 LRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDEAHRFA++ HR++R +K+  S LDEI G+G  R++ LL  F ++  I  +S E L  
Sbjct: 547 VRDEAHRFAVSFHRQQRMQKSRRSRLDEIPGLGFKRQKDLLAHFHSLDYIREASLEQLQQ 606

Query: 592 IEGISKKIACKIYNHFHK 609
           + GI +++A +IYN+FH 
Sbjct: 607 VTGIGEQLAKEIYNYFHP 624


>gi|168576483|ref|ZP_02722357.1| excinuclease ABC, C subunit [Streptococcus pneumoniae MLV-016]
 gi|307067233|ref|YP_003876199.1| nuclease subunit of the excinuclease complex [Streptococcus
           pneumoniae AP200]
 gi|183577678|gb|EDT98206.1| excinuclease ABC, C subunit [Streptococcus pneumoniae MLV-016]
 gi|306408770|gb|ADM84197.1| Nuclease subunit of the excinuclease complex [Streptococcus
           pneumoniae AP200]
          Length = 615

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 167/620 (26%), Positives = 289/620 (46%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIYKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT++H  P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITNEH-YPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKNDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M       ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVTAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGRPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +  + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEAGVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +   + 
Sbjct: 575 GVPRAVAEAVQRKLNPQETE 594


>gi|306829082|ref|ZP_07462272.1| excision endonuclease subunit UvrC [Streptococcus mitis ATCC 6249]
 gi|304428168|gb|EFM31258.1| excision endonuclease subunit UvrC [Streptococcus mitis ATCC 6249]
          Length = 615

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 165/621 (26%), Positives = 289/621 (46%), Gaps = 41/621 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M       ++E A  +RD + A+  ++     +   
Sbjct: 182 FMAQEVSDFLKGQDDKIIDDLKGKMAVVAKSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ ++ ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDQEAVKALVDTKIVK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++      +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGHLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ ++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHT 614
           G+ + +A  +    +   +  
Sbjct: 575 GVPRAVAEAVQRKLNPKEAEA 595


>gi|257784741|ref|YP_003179958.1| excinuclease ABC, C subunit [Atopobium parvulum DSM 20469]
 gi|257473248|gb|ACV51367.1| excinuclease ABC, C subunit [Atopobium parvulum DSM 20469]
          Length = 644

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 177/637 (27%), Positives = 303/637 (47%), Gaps = 49/637 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +Q+P  PG Y   D +G+V+YVGKA NL+ R++ Y+   +   +I  M+  + +  + 
Sbjct: 6   QVDQVPTDPGCYLWKDGSGKVIYVGKAKNLRARMRQYVTLQDDRAKIPLMMQVVRSFDYI 65

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V   E EAL+LE N+I + +P FN+  +DDKS+PYI IT+    PA+   R+       Y
Sbjct: 66  VVENEHEALVLERNLIAQYRPYFNVDFKDDKSYPYIAITESDTFPAIKYTREKHKKGTRY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFR---------------------HRTRPCL 160
           FGP+    A  +TI +L++   + S     ++                      + RPC 
Sbjct: 126 FGPYTDSYAARQTIETLRKVVPICSATCVEWKRAKRLLEKDPDGAAVANLLLAKKGRPCF 185

Query: 161 LFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAII 220
            + + +  G C G I +  Y + V + + FL G    +  ++   M +A    D+E A  
Sbjct: 186 DYHVGKGPGVCVGAIDTVSYAKNVRQVENFLRGNRSEIVSELKDQMQEAAADLDFEKAAR 245

Query: 221 HRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD 277
            + RL +LS + +     +     +D   +Y  + ++         G+   +  F L   
Sbjct: 246 LKSRLRSLSDLDDRQQVTFPTSVNIDLIGIYREETISAACVFVVREGRTIRSVEFILDKG 305

Query: 278 SESTNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336
            + +  +++S FL+++Y +    P  + L  +  +  +L     ++ G+   +  P++GE
Sbjct: 306 LDVSEEELVSGFLKRYYDETADIPAEVNLPIDLLDAEVLSEWLTQKRGHNCVLHHPQRGE 365

Query: 337 KRKIIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392
           K ++++ A  NA  +  + +      +      L       AL   P RIE +D S + G
Sbjct: 366 KFRLLQMASANARHALMRHMIRTGYADDRTNQALLQLESALALDAPPLRIECFDISTLHG 425

Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452
              V  MVV       K+QYR+F +    +   +D   M  VL RR+S            
Sbjct: 426 NFTVASMVVFTNGKADKSQYRRFKIRAE-LDEANDFVSMTEVLGRRYS-----------P 473

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
            +  +  F S PD++++DGGK QL+AA   L +L ++  I +  +AK  +     E F  
Sbjct: 474 ERMADERFGSRPDLLVVDGGKPQLTAAINQLNELGLD--IPVCGLAKSDE-----EVFVP 526

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLL 571
                +VL      LY I+++RDE+HRFAIT HR+ R KA   S LDEI G+GP RK+ +
Sbjct: 527 WDDTPIVLPTGSASLYLIKQVRDESHRFAITFHRELRDKAMTVSILDEIPGVGPKRKKDI 586

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ FG+ K +  +S E ++ ++G+S  +A  IY    
Sbjct: 587 MRHFGSFKRLKAASVEDISQVKGVSVNLAETIYKELK 623


>gi|332366791|gb|EGJ44532.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1059]
          Length = 611

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 172/620 (27%), Positives = 294/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  I   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAIVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LERSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VIGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +  T  
Sbjct: 575 GVPRAVAEAVREKLNPKTQE 594


>gi|166362764|ref|YP_001655037.1| excinuclease ABC subunit C [Microcystis aeruginosa NIES-843]
 gi|189038065|sp|B0JFQ0|UVRC_MICAN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|166085137|dbj|BAF99844.1| excinuclease ABC subunit C [Microcystis aeruginosa NIES-843]
          Length = 625

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 203/618 (32%), Positives = 313/618 (50%), Gaps = 29/618 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
           ++P  PGVY + D  G +LY+GK+  L+ R++SY   +   + RI  M+ Q+  I F VT
Sbjct: 23  EIPLEPGVYFLRDQNGEILYIGKSKKLRSRVRSYFRPSQPLSPRIALMVRQVTEIEFIVT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121
            TE E+L LEAN+IK+ +P FN LL+DDK +PYI IT     P ++  R       +  Y
Sbjct: 83  DTEAESLALEANLIKQHQPHFNTLLKDDKKYPYICITWSETYPRIFITRKRRINNQKDRY 142

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     +  T++ ++RTF LR     +F  + RPCL + I RC G C   IS + Y 
Sbjct: 143 YGPYVDTRLLRYTLHLIKRTFPLRQRPQPLF--KDRPCLNYDIGRCPGVCQKLISPQDYR 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E + +      G    L EK+A  M  A+   D+E A   RD++  L  +          
Sbjct: 201 ETLQKVAMIFQGRTGELLEKLATKMLAASENLDFEQAATIRDQIRGLQALNTDQKVSLPD 260

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  +L  ++   CIQ      G+  G   FF  + S +   +IL   L + Y   
Sbjct: 261 DTVSRDAIALAKDEQHCCIQLFQVRSGRLVGRLGFFADSQS-ANEGEILQKVLEEHYLSV 319

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  ILL  E  E  +L     ++ G KV++TVP++  K  ++     NA     +
Sbjct: 320 EGVEIPSEILLPCELPEGEVLAGWLREKKGRKVELTVPQRQSKADLLAMVEKNALYELEK 379

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +       L+D      LP +P RIE YD SHI G +AV   VV  +       YR 
Sbjct: 380 TKRSADRDLQSLQDLAVILDLPALPHRIEGYDISHIQGSNAVASGVVFIDGVAANQHYRH 439

Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           + +   +VK    DD A +  V+ RRF +  +N +N+             +PD+V++DGG
Sbjct: 440 YKIKNPEVKIGHSDDFASLAEVIRRRFRRYAENPDNIAESD--------DFPDLVMIDGG 491

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQLSA   VL ++N+  ++ ++S+AK  +     E F   +   L  +   P +  ++R
Sbjct: 492 KGQLSAVVAVLGEMNLLEQVKVVSLAKQRE-----EIFLPGESSPLETDKEQPGVQLLRR 546

Query: 533 LRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDEAHRFA++ HR++R +K+  S LDEI G+G  R++ LL  F ++  I  +S E L  
Sbjct: 547 VRDEAHRFAVSFHRQQRMQKSRRSRLDEIPGLGFKRQKELLAHFHSLDYIREASLEQLQQ 606

Query: 592 IEGISKKIACKIYNHFHK 609
           + GI +++A +IYN+FH 
Sbjct: 607 VTGIGEQLAKEIYNYFHP 624


>gi|324994563|gb|EGC26476.1| excinuclease ABC subunit C [Streptococcus sanguinis SK678]
 gi|327462543|gb|EGF08867.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1]
          Length = 611

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 171/620 (27%), Positives = 293/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 DLAQEVAAFLKGLDDRIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++   +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQD-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +  T  
Sbjct: 575 GVPRAVAEAVREKLNPKTQE 594


>gi|323495673|ref|ZP_08100744.1| excinuclease ABC subunit C [Vibrio sinaloensis DSM 21326]
 gi|323319308|gb|EGA72248.1| excinuclease ABC subunit C [Vibrio sinaloensis DSM 21326]
          Length = 588

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 205/607 (33%), Positives = 316/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY      + +   ++S I+ I  TVT TE EAL+LE 
Sbjct: 1   MYNADAVVIYVGKAKDLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+ PC    IS E+Y E V   + FL G
Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAAPCVSSVISDEQYAELVGLVRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHN 250
            +  + E +   M QA+    +E A   RD++ A+  +Q       + MD          
Sbjct: 180 KDQLVLETLVERMEQASKTLRFEEAAKFRDQIQAIRRVQEQQFVSEDSMDDMDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306
             +ACI       G+  G+ + F K  +++   ++   FL Q+Y         P  I+L+
Sbjct: 240 NGIACIHILMIRQGKILGSRSHFPKIPNDTNREEVFYSFLSQYYLSHNEARTIPTRIILN 299

Query: 307 E-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
               EET  L+ +     G KV   V   G + + ++ +  NA  + T K++ +++    
Sbjct: 300 SGLIEETEPLQQALASIAGRKVHFHVNPTGTRGRYLKLSNTNALTAITTKINHKMTISQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K+  +   +  I  R+E +D SH MG S +   VV    G VK +YR++N+    +   
Sbjct: 360 FKELREVLGMETIG-RMECFDISHTMGESTIASCVVFNHEGPVKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M   LERR+S+ +  E+                PD+V +DGGKGQL+ A  ++ +
Sbjct: 417 DDYAAMGQALERRYSKQLDVEK---------------IPDIVFIDGGKGQLNRAHEIISQ 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  +I IAKG  R  G+E      GE   L    P L+ +Q +RDE+H  AI 
Sbjct: 462 YWGDWPKRPRLIGIAKGVTRKPGLETLITTDGEEFNLPSDAPALHLMQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 GHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEN 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|299771807|ref|YP_003733833.1| excinuclease ABC subunit C [Acinetobacter sp. DR1]
 gi|298701895|gb|ADI92460.1| excinuclease ABC subunit C [Acinetobacter sp. DR1]
          Length = 584

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 198/606 (32%), Positives = 309/606 (50%), Gaps = 32/606 (5%)

Query: 10  PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69
           PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   VT +E EA
Sbjct: 5   PGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTRSETEA 64

Query: 70  LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASV 128
           LLLE N+IK+ +P +NI+LRDDKS+ YI ++     P L   R     Q G +FGP+ S 
Sbjct: 65  LLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRLASGRGKGKHQIGKFFGPYPSA 124

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +   T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G IS E Y E ++ + 
Sbjct: 125 YSARDTLLVLQKLFNVRQCENSYFAQRKRPCLQYQIKRCSAPCVGLISPEDYKEDINNSI 184

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
           +FL G    L +++   M QA  + ++E A+ +RDRL+ L  +Q            D  +
Sbjct: 185 RFLQGDTKELNQELIAKMEQAAAELEFEKAVFYRDRLSLLREVQAQQAVFKVKGEADILA 244

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCPENIL 304
           + +   + C+Q  +   G+  G  ++F          Q+LS F+  FY       P  ++
Sbjct: 245 IAYQAGVTCVQIMYVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEVPNELI 303

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           ++    +   LE +  +Q+G KV+I    +  + + +E A +N   +   +LS  +    
Sbjct: 304 VNIALPDRKELEEALTQQFGKKVQIKSNVRETRAEWLELAEMNVQHAIKGQLSNHLELNE 363

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
                 +    P     IE +D SH MG + +   VV  + G  K  YR+F +    +  
Sbjct: 364 RFHQLEQVIGRPVDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD--ITA 419

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A MR  L RR+ + I                    PD++++DGGKGQL  A  V++
Sbjct: 420 GDDYAAMRQALTRRYKKAI-------------------LPDLLLIDGGKGQLHMAMEVMQ 460

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L ++    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHRFAIT 
Sbjct: 461 ELGLDAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDHKALHLIQQVRDEAHRFAITK 518

Query: 545 HRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR +R K    S L+ I G+GP R+R LL  FG ++ + ++S + L  + G  + +A  I
Sbjct: 519 HRAKRDKRRSISVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTLVPGFGEMMARTI 578

Query: 604 YNHFHK 609
           Y   H+
Sbjct: 579 YKILHE 584


>gi|149005728|ref|ZP_01829467.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP18-BS74]
 gi|307126816|ref|YP_003878847.1| excinuclease ABC, C subunit [Streptococcus pneumoniae 670-6B]
 gi|147762668|gb|EDK69628.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP18-BS74]
 gi|306483878|gb|ADM90747.1| excinuclease ABC, C subunit [Streptococcus pneumoniae 670-6B]
 gi|332077046|gb|EGI87508.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA17545]
          Length = 614

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   +++T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHNT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596


>gi|294793537|ref|ZP_06758674.1| excinuclease ABC subunit C [Veillonella sp. 3_1_44]
 gi|294455107|gb|EFG23479.1| excinuclease ABC subunit C [Veillonella sp. 3_1_44]
          Length = 608

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 189/615 (30%), Positives = 313/615 (50%), Gaps = 34/615 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
               +P  PGVY   D   R++YVGKA NL+ R++SY+ ++ +   ++T M+ +  ++  
Sbjct: 9   KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEV 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EAL+LE  +IK  +P++NI LRDDK++PY+ I+ +   P +Y  R        
Sbjct: 69  IQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF  V +V   +  +++ + LR+C         RPCL + +  C  PC  +IS   Y
Sbjct: 129 YFGPFTDVTSVHVVLKLIRQYYPLRTCKSMKVE---RPCLQYHMHYCEAPCFNKISVPDY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +++ E  +   G    L ++I   M  A     +E A  +RD+L+++  IQ     +  
Sbjct: 186 RKYIDEIIELFEGKPIPLLKEIKSKMEAAAEDLRFEDAARYRDQLSSIEKIQEKQRMVTQ 245

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D   L  + ++AC+Q  F   G+  G   +F++ D +S+   +  +  + +     
Sbjct: 246 RGDLDVLGLAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSSETIMTDFIKQYYGDTNF 305

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354
            P+ +LL  E+ +  LL   F +  G  V ++VP++G K  +I+ A  NA         Q
Sbjct: 306 IPKELLLPMESTDRDLLTEWFTQLKGQHVDVSVPQRGYKMDMIKMAHENAETFLEERRRQ 365

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +K   +   LP +P+R+E +D SH  G   V  MVV       K +YR+
Sbjct: 366 WQHQIDKTGGAVKKLAEILDLPRLPERMECFDISHTQGTETVASMVVFEGGKPAKKEYRR 425

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F L        DD   M  ++ERR+                   +    PD++I+DGGKG
Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 468

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QL+AA  +++ + V + + +IS+AK  +     E F   + E+++L+   P L  +Q++R
Sbjct: 469 QLNAALPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSESIILSHHTPELQLLQQIR 522

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HRK R K+   S LD I GIGP R++ L   F +++ +  +S + LA++E
Sbjct: 523 DEAHRFAITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELANVE 582

Query: 594 GISKKIACKIYNHFH 608
            ++ K A  +YN F 
Sbjct: 583 SMNYKTAETLYNFFR 597


>gi|168485730|ref|ZP_02710238.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC1087-00]
 gi|225856316|ref|YP_002737827.1| excinuclease ABC subunit C [Streptococcus pneumoniae P1031]
 gi|254764949|sp|C1CJ89|UVRC_STRZP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|183571093|gb|EDT91621.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC1087-00]
 gi|225725628|gb|ACO21480.1| excinuclease ABC, C subunit [Streptococcus pneumoniae P1031]
          Length = 614

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 290/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596


>gi|262370103|ref|ZP_06063430.1| excinuclease ABC subunit C [Acinetobacter johnsonii SH046]
 gi|262315142|gb|EEY96182.1| excinuclease ABC subunit C [Acinetobacter johnsonii SH046]
          Length = 599

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 197/611 (32%), Positives = 305/611 (49%), Gaps = 32/611 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            M   PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   V  
Sbjct: 15  NMTTLPGVYRMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVVR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK  +P +NI+LRDDKS+ YI ++     P +   R     Q G +FG
Sbjct: 75  SETEALLLEQNLIKLHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQVGKFFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S      T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G IS E+Y   
Sbjct: 135 PYPSAYNARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLISPEEYKND 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V  + +FL G    L +++   M QA    ++E A+ +RDR+A L  +Q+          
Sbjct: 195 VDNSIRFLQGDTKELNQELIAKMEQAAEALEFEKAVFYRDRMALLRDVQSQQAIYKLKGE 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPC 299
            D  ++ +   + C+Q      G+  G  ++F          Q+L+ F+  FY       
Sbjct: 255 ADILAIAYQAGVTCVQIMHVRNGKMLGGKSYFPDM-LGDDLGQMLADFIANFYFQVADEV 313

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ++++ E  +   LE +  +Q+  KV+I    +  + + +E A +N   +   +L+  
Sbjct: 314 PSELIVNVELPDRKELEQALQQQFDKKVQIKHSVRETRAEWLELAQMNVQHAIKGQLANH 373

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                      +    P     IE +D SH MG   V   VV    G  K  YR+F++  
Sbjct: 374 FELNERFHQLEQVVGRPIDR--IECFDISHTMGEETVASCVVFDSGGIRKRDYRQFSIQD 431

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A MR  L RR+ + +                    PD++++DGGKGQL  A
Sbjct: 432 --ITAGDDYAAMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMA 470

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             V+++L +E    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHR
Sbjct: 471 MEVMQELGLEAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDHKALHLIQQVRDEAHR 528

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HR +R KK   S L+ I G+GP R+R LL  FG ++ + ++S + L  + G+ + 
Sbjct: 529 FAITKHRAKRDKKRGSSILEVIPGLGPKRRRDLLTHFGGIQGVLKASEKDLTLVPGLGEV 588

Query: 599 IACKIYNHFHK 609
           +A  IY   H+
Sbjct: 589 MARTIYKVLHE 599


>gi|262280735|ref|ZP_06058518.1| EsvL [Acinetobacter calcoaceticus RUH2202]
 gi|262257635|gb|EEY76370.1| EsvL [Acinetobacter calcoaceticus RUH2202]
          Length = 602

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 200/606 (33%), Positives = 312/606 (51%), Gaps = 32/606 (5%)

Query: 10  PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69
           PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I NI   VT +E EA
Sbjct: 23  PGVYKMLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYNIETLVTRSETEA 82

Query: 70  LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASV 128
           LLLE N+IK+ +P +NI+LRDDKS+ YI ++     P L   R     Q G +FGP+ S 
Sbjct: 83  LLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSSDKPYPRLASGRGKGKHQIGKFFGPYPSA 142

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +   T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G IS E Y E V+ + 
Sbjct: 143 YSARDTLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLISPEDYKEDVNNSI 202

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
           +FL G    L +++   M QA  + ++E A+ +RDRL+ L  +Q            D  +
Sbjct: 203 RFLQGDTKELNQELIAKMEQAAAELEFEKAVFYRDRLSLLREVQAQQAVFKVKGEADILA 262

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCPENIL 304
           + +   + C+Q  +   G+  G  ++F          Q+LS F+  FY       P  ++
Sbjct: 263 IAYQAGVTCVQIMYVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEVPNELI 321

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           ++    +   LE +  +Q+G KV+I    +  + + +E A +N   +   +LS  +    
Sbjct: 322 VNIALPDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNHLELNE 381

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
                 +    P     IE +D SH MG + +   VV  + G  K  YR+F +    +  
Sbjct: 382 RFHQLEQVIGRPVDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD--ITG 437

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A MR  L RR+ + I                    PD++++DGGKGQL  A  V++
Sbjct: 438 GDDYAAMRQALTRRYKKAI-------------------LPDLLLIDGGKGQLHMAMDVMQ 478

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L ++    ++ ++KG  R  G+E      G  + L   +  L+ IQ++RDEAHRFAIT 
Sbjct: 479 ELGLDAF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDNKALHLIQQVRDEAHRFAITK 536

Query: 545 HRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR +R K+ + S L+ I G+GP R+R LL  FG ++ + ++S + L  + G  + +A  I
Sbjct: 537 HRAKRDKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTLVPGFGEMMARTI 596

Query: 604 YNHFHK 609
           Y   H+
Sbjct: 597 YKILHE 602


>gi|261210629|ref|ZP_05924921.1| excinuclease ABC subunit C [Vibrio sp. RC341]
 gi|260840114|gb|EEX66694.1| excinuclease ABC subunit C [Vibrio sp. RC341]
          Length = 588

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 204/607 (33%), Positives = 319/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGTKKRRGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y E VH  + FL G
Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            ++ +   +   M QA+ +  +E A   RD++ A+  +Q       +    +D       
Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306
             +ACI       G+  G+ + F K  S+++  ++   FL Q+Y      +  P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
               EET  L+ +  +  G KV   V   G + + ++ A  NA  + T K++ +++    
Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKINHKMTIGQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K   ++  +  I  R+E +D SH MG S +   VV  + G +K +YR++N+    +   
Sbjct: 360 FKALQEELGMDTIT-RMECFDISHTMGESTIASCVVFNQEGPLKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+S+ +                    PD++ +DGGKGQL+ A  ++  
Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISS 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +      II IAKG  R  G+E      G+   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 CWQDWPKYPRIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEI 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|75910493|ref|YP_324789.1| excinuclease ABC subunit C [Anabaena variabilis ATCC 29413]
 gi|119367626|sp|Q3M542|UVRC_ANAVT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|75704218|gb|ABA23894.1| Excinuclease ABC subunit C [Anabaena variabilis ATCC 29413]
          Length = 627

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 198/619 (31%), Positives = 307/619 (49%), Gaps = 29/619 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
           ++P  PGVY M D + R++Y+GK+  L+ R++SY     N T RI  M   +  I F VT
Sbjct: 23  EIPPEPGVYFMRDGSDRIIYIGKSRKLRSRVRSYFREGYNKTERIATMAKLVTEIEFIVT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121
            TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R       +  Y
Sbjct: 83  DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFITRKRQLGKEKDKY 142

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     + + +   +R F LR     +F  + RPCL + + RC G C   IS E+Y 
Sbjct: 143 YGPYTDSGLLREILRISKRIFALRQRPQPLF--KDRPCLNYDLGRCPGVCQQLISPEEYR 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V +      G    L + ++  M +A    ++E A   RD++A L  +          
Sbjct: 201 KTVQKVAMVFQGRTQELIDILSEQMEKAAEALNFEVAARIRDQIAGLKSLTAEQKVSLPD 260

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-- 295
                D  +L  +   ACIQ      GQ  G   F  ++ +E     IL   L + Y   
Sbjct: 261 DTVSRDAIALAADAQHACIQLFQIRAGQLVGRLAFVAESHAE--PGAILQRVLEEHYQTA 318

Query: 296 -DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  IL+  E  +  +L     ++ G KV I  P++  K ++IE    NA     +
Sbjct: 319 ESVEIPAEILVQHELPDAEILADVLTQRKGRKVTIFTPQRQVKAELIEMVERNAQYELQR 378

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                  +    +D      LP +P RIE YD SHI G +AV   VV  +    K  YR 
Sbjct: 379 MQKLGDRNHQATQDLAAILDLPDLPHRIEGYDISHIQGSNAVASQVVFIDGLPAKQNYRH 438

Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           + +    V     DD A +  V++RRF +  ++       P+      P WPD++++DGG
Sbjct: 439 YKIKNPTVTIGHSDDFASLAEVIQRRFRKYAED-------PQLSRVGNPDWPDLIMIDGG 491

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQLS+   VL+++N+   + +IS+AK  +     E F   + + L  +   P +  ++R
Sbjct: 492 KGQLSSVVAVLQEMNLLEDLRVISLAKRRE-----EIFLPGESQPLKTDAEQPGVQLLRR 546

Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFA++ HR++R  K   S LDEI G+G  R++ LL  F +V  I +++P  +A 
Sbjct: 547 LRDEAHRFAVSFHRQQRSDKLKRSRLDEIPGLGHHRQKQLLAHFRSVDYIRQATPAQIAE 606

Query: 592 IEGISKKIACKIYNHFHKN 610
           + GI   +A  IY++FH +
Sbjct: 607 VPGIGPHLAQAIYDYFHPS 625


>gi|253579751|ref|ZP_04857019.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848750|gb|EES76712.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 620

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 197/633 (31%), Positives = 321/633 (50%), Gaps = 38/633 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M      ++YVGKA +L+ R++ Y  S+ N   +I  M++ I    +
Sbjct: 7   ELKKLPGKPGVYIMHGEKDEIIYVGKAVSLKNRVRQYFQSSRNKGAKIEQMVTHITRFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +L+DDKS+P+I +T   + P +   R     +  
Sbjct: 67  IITDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKVTVNEEYPRVLFARRMKKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+  I  +++ + +RSC   + R   + RPCL + +K+CS PC G +SSE
Sbjct: 127 YFGPYTSAGAVKDVIELVRKLYKVRSCNRVLPRDCGKDRPCLYYHMKQCSAPCQGYVSSE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + E  KFL+G   +  + +   M  A+ +  +E A+ +RD + ++  I       
Sbjct: 187 EYKKNIAELLKFLNGDFKDTIDMLTDKMMAASEEMRFEDAMEYRDLIRSIQKIGERQKIT 246

Query: 239 YNRMDCFSLYH---------NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289
               +   +            +  A +Q  F   G+  G   F+L+     T AQ+LS F
Sbjct: 247 GYGEEDKDIIAVAMDESLDLREQDAVVQVFFVRGGKLIGREHFYLRVARGDTKAQVLSSF 306

Query: 290 LRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
           ++QFY   P  P  I+L +E E+  ++E     +   +V I VPK+G K K++E A  NA
Sbjct: 307 MKQFYAGTPFIPREIMLQKEIEDAKIIEEWLTDRRKQRVYIRVPKKGTKEKLVELAEENA 366

Query: 349 HRS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
                    +    E      + +  +   L  I  R+E YD S+I G  +VG MVV  +
Sbjct: 367 KMVLDKDRERIKREEGRTIGAVHEVEEWLGLSGIR-RMEAYDISNISGFESVGSMVVYEK 425

Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
               ++ YRKF +    V+  +D A M  VL RRF+   K+E +          SF   P
Sbjct: 426 GKPKRSDYRKFKIKW--VQGPNDYASMEEVLTRRFTHEGKDEFD----------SFSIMP 473

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGG+GQ++ A  VL+ L +E  I +  + K                  + ++   
Sbjct: 474 DLILMDGGRGQVNIALKVLEILGIE--IPVCGMVKDDHHRTRG---LYYNNLEIPIDTDS 528

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
                I R++DEAHRFAI  HR  R K   +S LD+I GIG  R++ L++ F +V+ I  
Sbjct: 529 EGFRLITRIQDEAHRFAIEFHRSLRSKEQVHSLLDDIPGIGETRRKALMRKFKSVENIRD 588

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           +S + LA  E ++   A K+Y  FH   +  PT
Sbjct: 589 ASLKELAETESMNAGSAQKVYEFFHG--ASVPT 619


>gi|307708320|ref|ZP_07644787.1| excinuclease ABC, C subunit [Streptococcus mitis NCTC 12261]
 gi|307615766|gb|EFN94972.1| excinuclease ABC, C subunit [Streptococcus mitis NCTC 12261]
          Length = 615

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/619 (27%), Positives = 290/619 (46%), Gaps = 41/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +  +    + C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPPY----KVCFYYHIGQCMAHTICKKDESYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMATAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKVLVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ ++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVDV- 574

Query: 594 GISKKIACKIYNHFHKNTS 612
           G+ + +A  +    +   +
Sbjct: 575 GVPRAVAEAVQRKLNPQEA 593


>gi|225854150|ref|YP_002735662.1| excinuclease ABC subunit C [Streptococcus pneumoniae JJA]
 gi|254764948|sp|C1CCZ1|UVRC_STRZJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|225723356|gb|ACO19209.1| excinuclease ABC, C subunit [Streptococcus pneumoniae JJA]
          Length = 615

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/620 (27%), Positives = 292/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGSIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGRPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +   + 
Sbjct: 575 GVPRAVAEAVQTKLNPQETE 594


>gi|168490496|ref|ZP_02714639.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC0288-04]
 gi|183574918|gb|EDT95446.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC0288-04]
          Length = 614

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 292/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMVAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596


>gi|37523161|ref|NP_926538.1| excinuclease ABC subunit C [Gloeobacter violaceus PCC 7421]
 gi|81708839|sp|Q7NFD4|UVRC_GLOVI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|35214164|dbj|BAC91533.1| excinuclease ABC subunit C [Gloeobacter violaceus PCC 7421]
          Length = 628

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 193/618 (31%), Positives = 307/618 (49%), Gaps = 35/618 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVTC 64
           +P   GVY M D AG +LYVGKA NL+ R++SY    + H+ RI  M+ ++++    +T 
Sbjct: 18  LPTSAGVYLMRDEAGEILYVGKAKNLRNRVRSYFQPGHDHSPRIAIMVGKVHDFELILTD 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STIQGSYF 122
           TE EAL+LE N+IK  KPR+N+LL+DDK +PY+ IT   + P ++  R       +  YF
Sbjct: 78  TEAEALVLEDNLIKTHKPRYNVLLKDDKQYPYLCITWSEEYPRIFVTRRRGSGHPEDRYF 137

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+    A+  T+  L++ F LR     VF  + RPC+ +++ RC G C   IS ++Y  
Sbjct: 138 GPYTDAGALHSTLGLLKKLFPLRQRNTPVF--KDRPCINYEMGRCPGLCQRLISPQEYRA 195

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            + + +  L G    L  ++   M  A    ++E A   RDR+  L+ +  H        
Sbjct: 196 TIRQIQMILQGRTAELLAQLEDQMQTAAAAMNFEHAARLRDRITGLNQLGAHQKITVPDS 255

Query: 243 DCFS----LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---T 295
                   L  +  L  IQ      G+  G   F     S      IL   L + Y    
Sbjct: 256 SVSRDAVALAADAALVSIQLFQVRSGKLIGRLGFS-AAASGEDPGHILQRVLEEHYRASA 314

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  +L      E  +L     ++ G KV+I  P++  K +++E    NA     + 
Sbjct: 315 SEEIPLEVLTQHPLPEADILATWLAEKKGRKVEIHAPQRQIKAELVEMVARNAEAELQRL 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                  +  L +  +   LP +P+R+E YD SHI G   V   VV  +    K  YR +
Sbjct: 375 ERFSRRQEKGLLNLAEALELPSVPRRMECYDISHIQGTDTVASRVVFVDGAPAKQYYRHY 434

Query: 416 NLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
            +    +     DD A M  V+ RRF++     E                PD+V++DGGK
Sbjct: 435 KIRDPRIVAGRPDDFASMAEVISRRFARAESEPE-------------GDLPDLVVIDGGK 481

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQLSAA+ V+++L+    +  I +AK  +     E F   + + +++   DP L+ +QR+
Sbjct: 482 GQLSAARAVMEELS-YGDVPTIGLAKRLE-----EVFLPGRSDPVLIAQGDPALHLLQRI 535

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFA++ HR++R K+   S LD+I GIGP ++++LL +F +V ++ ++S E +A  
Sbjct: 536 RDEAHRFAVSFHREQRGKRMTRSSLDDIPGIGPAKRKILLDTFRSVPVLEKASFEEIAKT 595

Query: 593 EGISKKIACKIYNHFHKN 610
            GI  ++A  I+ +FH  
Sbjct: 596 PGIGSRLAQVIHTYFHGE 613


>gi|225860615|ref|YP_002742124.1| excinuclease ABC subunit C [Streptococcus pneumoniae Taiwan19F-14]
 gi|254764950|sp|C1CQA2|UVRC_STRZT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|225726710|gb|ACO22561.1| excinuclease ABC, C subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|327390352|gb|EGE88693.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA04375]
          Length = 614

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 292/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596


>gi|149010764|ref|ZP_01832135.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP19-BS75]
 gi|303253942|ref|ZP_07340063.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS455]
 gi|147765245|gb|EDK72174.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP19-BS75]
 gi|301801486|emb|CBW34178.1| UvrABC DNA repair system protein C [Streptococcus pneumoniae
           INV200]
 gi|302599118|gb|EFL66143.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS455]
          Length = 614

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 292/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596


>gi|148998291|ref|ZP_01825760.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP11-BS70]
 gi|147755934|gb|EDK62978.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP11-BS70]
          Length = 615

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 167/620 (26%), Positives = 288/620 (46%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIYKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT++H  P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITNEH-YPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKNDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M       ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVTAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGRPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++                   + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQHEA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +  + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEAGVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +   + 
Sbjct: 575 GVPRAVAEAVQRKLNPQETE 594


>gi|262282590|ref|ZP_06060358.1| excinuclease ABC subunit C [Streptococcus sp. 2_1_36FAA]
 gi|262261881|gb|EEY80579.1| excinuclease ABC subunit C [Streptococcus sp. 2_1_36FAA]
          Length = 609

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 172/615 (27%), Positives = 292/615 (47%), Gaps = 41/615 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQTMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++   +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNIAKEVIQD-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFH 608
           G+ + +A  +    H
Sbjct: 575 GVPRAVAEAVLEKLH 589


>gi|327489784|gb|EGF21574.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1058]
          Length = 611

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/620 (27%), Positives = 293/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S  + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNP----SEKVCFYYHLGQCKAHTICQVDSRYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 DLAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNIAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  ++ + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEATVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +  T  
Sbjct: 575 GVPRAVAEAVREKLNPKTQE 594


>gi|327474399|gb|EGF19805.1| excinuclease ABC subunit C [Streptococcus sanguinis SK408]
          Length = 611

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 171/621 (27%), Positives = 294/621 (47%), Gaps = 41/621 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGSIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYADKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHT 614
           G+ + +A  +    +  T   
Sbjct: 575 GVPRAVAEAVREKLNPKTQEQ 595


>gi|328946357|gb|EGG40499.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1087]
          Length = 611

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 170/622 (27%), Positives = 293/622 (47%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +R+ + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQTMEFEKAAEYRNLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F      + L+      + +QR++
Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLRVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +  T    
Sbjct: 575 GVPRAVAESVQRKLNPKTQEQE 596


>gi|258645487|ref|ZP_05732956.1| excinuclease ABC subunit C [Dialister invisus DSM 15470]
 gi|260402839|gb|EEW96386.1| excinuclease ABC subunit C [Dialister invisus DSM 15470]
          Length = 625

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 190/623 (30%), Positives = 310/623 (49%), Gaps = 38/623 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY+  D  GRV+YVGKA NL+ R++SY+    N + ++  MI    ++  
Sbjct: 11  KVDALPDSPGVYRWKDKDGRVIYVGKAVNLKNRVRSYLREDKNRSPKVAAMIRHAADLDI 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQG 119
           T+T TE+EAL+LE N+IK L P++NI LRDDKS+PY+ IT   K P +   R+       
Sbjct: 71  TMTATEMEALILECNLIKELHPKYNISLRDDKSYPYVKITVNEKWPRILVTRNIRRDDGA 130

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGPF  V ++ KT++ ++R + +R+C        +RPCL + +  C  PC    + E+
Sbjct: 131 KYFGPFTDVGSLRKTLSLIRRLYPIRTCRSM---KVSRPCLQYHMNLCCAPCWNHCTEEQ 187

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E+V +      G N  L + + ++M  A+ + ++E A + RD+L A+  +Q   + + 
Sbjct: 188 YHEYVVKTCDLFEGKNTELVKALQKDMESASEEMNFERAAVLRDQLHAVQSVQQRQNIVS 247

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D   +      A ++  +  +G+  G     +      T+  I++ F++ FY   
Sbjct: 248 KEGDFDVVGMSRLDEHAGLEIFYIRYGKMVGKENLSIPDSLHETDEDIIAAFIKNFYGAN 307

Query: 298 P--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351
           P   P+ I+L    +E+ LL     K     VKI VP++G KR++ + A  NA       
Sbjct: 308 PSSVPKEIILPILPQESLLLTAWLSKLRNGDVKIYVPERGFKRRLKDMAQSNAAKYLADK 367

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             Q    +   Q  +    +   LP +P+RIE +D SH  G    G MVV       K +
Sbjct: 368 KLQWEYQDAREQGAVNKLKELLHLPKLPERIECFDISHNQGAETTGSMVVFESGRPNKKE 427

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR+F L        DD   M  V+ RR+                   +    PD+++LDG
Sbjct: 428 YRRFKLQSTQGTP-DDFKSMAEVMARRY----------------GIETKWPRPDLIVLDG 470

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQL AA  V++   ++    +I +AK  +     E +   + + ++++  +P L  +Q
Sbjct: 471 GKGQLDAALPVIRSCGIDT--PVIGLAKRME-----EIYVEGQTDPIIIDPHEPALQLLQ 523

Query: 532 RLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDEAHRF IT HRK   K+   S LD I GIGP R+  L  +F ++  +  ++ E L 
Sbjct: 524 FIRDEAHRFVITYHRKWTTKRNTESILDHIAGIGPQRRNALWHAFRSLDEMRNATVEELT 583

Query: 591 SIEGISKKIACKIYNHFHKNTSH 613
            ++G++K  A  ++  F      
Sbjct: 584 RVKGMNKTAAENVFRFFRMKKDE 606


>gi|157149911|ref|YP_001450129.1| excinuclease ABC subunit C [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189038123|sp|A8AWG9|UVRC_STRGC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157074705|gb|ABV09388.1| excinuclease ABC, C subunit [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 611

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 171/621 (27%), Positives = 294/621 (47%), Gaps = 41/621 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 DLAQEVAAFLKGQDDQIIEDLRGKMAGAAQTMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHT 614
           G+ + +A  +    +  T   
Sbjct: 575 GVPRAVAEAVQEKLNLKTQEQ 595


>gi|50083605|ref|YP_045115.1| excinuclease ABC subunit C [Acinetobacter sp. ADP1]
 gi|81393877|sp|Q6FF64|UVRC_ACIAD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|49529581|emb|CAG67293.1| excinuclease ABC subunit C; UvrC with UvrAB is a DNA excision
           repair enzyme [Acinetobacter sp. ADP1]
          Length = 599

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 191/610 (31%), Positives = 304/610 (49%), Gaps = 30/610 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            M + PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I++I   VT 
Sbjct: 15  NMTQLPGVYRMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIHDIETLVTR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK+ +P +NI+LRDDKS+ YI ++     P +   R     Q G +FG
Sbjct: 75  SETEALLLEQNLIKQHRPPYNIMLRDDKSYVYIFVSSDKPYPRIASGRGKGKHQIGKFFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G IS E Y + 
Sbjct: 135 PYPSAYSARDTLLVLQKLFNVRQCENSYFAQRKRPCLQYQIKRCSAPCVGLISPEDYKQD 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V  + +FL G    L +++   M +A  +  +E A+ +RDRL  L  +Q           
Sbjct: 195 VDNSIRFLQGDTKELNQELIAKMEEAAEQLAFEKAMFYRDRLGLLREVQAQQAVFKIKGE 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300
            D  ++     + C+Q  +   G+  G  ++F    S+     +  +    ++      P
Sbjct: 255 ADILAIAFQAGVTCVQIMYVRNGRMLGGKSYFPDMLSDDLGQMLSDFIANFYFQVADEVP 314

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ++++ E  +   LE +   Q+  K++I    +  + +  E A++N   +   +LS  +
Sbjct: 315 SELIVNVELPDRKELEQALQTQFDKKIQIKHKVRETRAEWQELAIMNVQHAIKGQLSNHL 374

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
                     +    P     IE +D SH MG + +   VV  + G  K  YR+F +   
Sbjct: 375 ELNERFHQLEQVVGRPVDR--IECFDISHTMGEATIASCVVFDQGGARKRDYRQFGIED- 431

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A MR  L RR+ + I                    PD++++DGGKGQL  A 
Sbjct: 432 -ITAGDDYAAMRQALTRRYKKHI-------------------VPDLLLIDGGKGQLHMAM 471

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            V++ L ++    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHRF
Sbjct: 472 EVMQTLGLDAF--MVGVSKGEGRKPGLETLHFTDGSKIQLPEDHKALHLIQQVRDEAHRF 529

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR +R K    S L+ I G+GP R+R LL  FG ++ + ++S + L  + G+   +
Sbjct: 530 AITKHRAKRDKRRAGSVLEVIPGLGPKRRRDLLTHFGGIQGVLKASEKELMLVSGLGPSM 589

Query: 600 ACKIYNHFHK 609
           A  IY   H+
Sbjct: 590 ARTIYKILHE 599


>gi|332712025|ref|ZP_08431955.1| excinuclease ABC subunit C [Lyngbya majuscula 3L]
 gi|332349353|gb|EGJ28963.1| excinuclease ABC subunit C [Lyngbya majuscula 3L]
          Length = 654

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 191/628 (30%), Positives = 307/628 (48%), Gaps = 28/628 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61
            +++P  PGVY M D +  +LY+GK+  L+ R++SY   +   + RI  M+ Q+ +I F 
Sbjct: 34  LKEIPLEPGVYLMRDHSASILYIGKSRKLRTRVRSYFRDSQPLSPRIAMMVGQVTDIEFI 93

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119
           VT TE EAL LEAN+IK+ +P +N+LL+DDK +PY+ IT     P ++  R       Q 
Sbjct: 94  VTDTEAEALALEANLIKQHQPYYNVLLKDDKKYPYVAITWSEDYPRIFITRKRRMGNKQD 153

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+  +  +  T++ +++ F +R     +F  + RPCL + + RC G C   I+ E+
Sbjct: 154 KYYGPYVDLKLLRNTLSLVKQIFPIRQRPRPLF--KDRPCLNYDLGRCPGVCQKLITPEE 211

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +      G    L E +  NM QA    ++E A   RD++  L+ +        
Sbjct: 212 YRKTIQKIAMVFQGRTGELIEMLTANMEQAAESLNFELAARIRDQITGLNSLSTDQKVAL 271

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFF----LKTDSESTNAQILSYFLR 291
                  D  +L  +   ACIQ      G   G   FF     + +       IL   L 
Sbjct: 272 PDDTVSRDAIALAADAKHACIQLFQIRGGHLVGRLGFFADVAPQGNGGIELGAILQRVLE 331

Query: 292 QFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
           + Y        P  IL+     +  +L     +  G  V I  P++  K ++IE    NA
Sbjct: 332 EHYQTADAVEIPTEILVQHPLPDGEMLADYLSRSKGRNVTILTPQRQTKAELIEMVKRNA 391

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +    +       +   ++D      LP +P+RIE YD SHI G +AV   VV  +    
Sbjct: 392 NYELERTQRLVDRNTKAMEDLANILDLPDLPRRIEGYDISHIQGSNAVASQVVFLDGTPA 451

Query: 409 KNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP----S 462
           K  YR + +   ++     DD A +  V+ RRF +     E  +                
Sbjct: 452 KQHYRHYKIKNPNITVGHSDDFASLAEVIRRRFRKSQLEPEPADSISSTINNQQSTIRKD 511

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPD+V++DGGKGQLSA   VL++LN++  + ++S+AK  +     E F   +   L  + 
Sbjct: 512 WPDLVMIDGGKGQLSAVVAVLQELNLQEEVPVVSLAKQYE-----ELFLPGEPLPLPTDP 566

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581
             P +  ++R+RDEAHRFA+  HRK+R    + S LDEI G+G  R++ LL  F ++  I
Sbjct: 567 EQPGVQLLRRVRDEAHRFAVNFHRKQRSTQLHRSRLDEIPGLGFQRQKQLLAHFNSIDYI 626

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHK 609
             +S + LA + GI  +++ +IY++FH 
Sbjct: 627 RNASVKQLAEVPGIGLRLSKEIYHYFHP 654


>gi|291546954|emb|CBL20062.1| excinuclease ABC, C subunit [Ruminococcus sp. SR1/5]
          Length = 615

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 197/627 (31%), Positives = 321/627 (51%), Gaps = 36/627 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M      ++YVGKA +L+ R++ Y  S+ N   +I  M++ I    +
Sbjct: 7   ELKKLPAKPGVYIMHGEKDEIIYVGKAISLKNRVRQYFQSSRNKGAKIERMVTHITRFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK  +P++N +L+DDKS+P+I +T     P +   R     +  
Sbjct: 67  IITDSELEALVLECNLIKEHRPKYNTMLKDDKSYPFIKVTVHEPYPRVLFARRMKKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+  I  +++ + +RSC  S+ R   + RPCL + +K+C  PC G +S E
Sbjct: 127 YFGPYTSGGAVKDVIELVRKLYQVRSCNRSLPRDTGKDRPCLYYHMKQCKAPCQGYVSQE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + +++  KFL+G   +   ++   M +A+ +  YE A+ +RD ++++  I       
Sbjct: 187 EYRKNINKVIKFLNGDFQDAISELMEKMQKASEEMRYEDAMEYRDLISSIRKIGERQKIT 246

Query: 239 -YNRMDCFSLYH--------NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289
            Y + D   +              A +Q  F   G+  G   F+L+     T AQ+LS F
Sbjct: 247 GYGQEDRDIIAVAMDDSEDLRDQDAVVQVFFIRDGRLIGRDHFYLRVAKGDTKAQVLSSF 306

Query: 290 LRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
           L+QFY   P  P  I+L  E E+  ++E     +   KV I VPK+G K K++E AL NA
Sbjct: 307 LKQFYAGTPFIPSEIMLQSEIEDADIIEEWLSGRRKQKVHIRVPKKGTKEKLVELALENA 366

Query: 349 HRS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
                    +    E      + +  +   L ++  R+E YD S+I G  +VG MVV  +
Sbjct: 367 RMVLAKDRERIRREEGRTIGAVHEVEEWLGLKNVV-RMEAYDISNISGFESVGSMVVYEK 425

Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
               ++ YRKF +    V+  +D A M  VL RRF+               +  SF   P
Sbjct: 426 GRPKRSDYRKFKIKW--VQGPNDYASMEEVLTRRFTH----------ESNGEFDSFARLP 473

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGG+GQ++ A  VL +L +   I +  + K          F       + ++   
Sbjct: 474 DLILMDGGRGQVNIALKVLNELGIS--IPVCGMVKDDHHRTRGLYF---NNVEIPIDTSG 528

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
                I R++DEAHRFAI  HR  R +   +S LD+I GIG  R++ LL+ F +V+ I  
Sbjct: 529 EGFRLITRIQDEAHRFAIEYHRSLRSREQVHSILDDIPGIGDTRRKALLRKFKSVENIRD 588

Query: 584 SSPETLASIEGISKKIACKIYNHFHKN 610
           +S E LA  E ++ + A ++Y  FHK+
Sbjct: 589 ASEEELAQTESMNARSARQVYEFFHKS 615


>gi|332362178|gb|EGJ39980.1| excinuclease ABC subunit C [Streptococcus sanguinis SK49]
          Length = 594

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 170/620 (27%), Positives = 293/620 (47%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICKVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 DLAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++   +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQD-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +  T  
Sbjct: 575 GVPRAVAEAVREKLNPKTQE 594


>gi|328955845|ref|YP_004373178.1| Excinuclease ABC subunit C [Coriobacterium glomerans PW2]
 gi|328456169|gb|AEB07363.1| Excinuclease ABC subunit C [Coriobacterium glomerans PW2]
          Length = 676

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 180/637 (28%), Positives = 312/637 (48%), Gaps = 49/637 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
              ++P  PG Y   + AG V+YVGKA NL+ R++ Y+   +   +I  M+  +    + 
Sbjct: 6   QVSRVPALPGCYLWKNAAGEVIYVGKAKNLRTRMRQYVTLADDREKIPLMMQVVRGFDYI 65

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  +E EAL+LE N+I++ +P +N+  +DDKS+P+I +T+    PA+   R+       Y
Sbjct: 66  VVDSEHEALVLERNLIRQYRPYYNVDFKDDKSYPFIAVTESDLFPAIKYTRERHRAGTRY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---------------------RTRPCL 160
           FGP+    A  +TI++L++   + S   + +R                        RPC 
Sbjct: 126 FGPYTDSRAARETIDTLRKVIPVCSAGCAEWRRVRRMIEAHRGDEDIVSLVCATGGRPCF 185

Query: 161 LFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAII 220
            + + R  G C G I+ E+Y   +   ++FL+G   ++  ++   MN+A    D+E A  
Sbjct: 186 DYHVGRGPGVCVGAIAPEQYARSIRAVERFLTGQRRDVVNELVSEMNEAAEALDFERAGR 245

Query: 221 HRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD 277
            + RL  +S + +     +     +D    Y  + +A         G+   +  F L   
Sbjct: 246 IKRRLQMISDLDDRQQVEFPTSVDIDLVGFYREETIAGACVFIVREGRTIRSVEFILDKG 305

Query: 278 SESTNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336
            +    +++S F++++Y +    P  + ++ +  +  LL     ++ G   ++  P++GE
Sbjct: 306 LDVEADELVSGFIKRYYDETADVPAEVDVAIDLADAELLGEWLTEKRGRVCRLHRPQRGE 365

Query: 337 KRKIIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392
           K +++E    NA  +  + +      +      L       ALP  P RIE +D S I G
Sbjct: 366 KHRLLETCERNARHALMRYMMRTGYADDRTNQALLQLESALALPAPPMRIECFDISTIHG 425

Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452
           C  V  MVV       K+QYR+F +  +  +  +D A M  VL RR++ +   +E     
Sbjct: 426 CFTVASMVVFTAGHADKSQYRRFRIRTSTGEA-NDFASMLEVLGRRYAPVRMADE----- 479

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
                  F S PD++++DGGK QL+AA   L +L ++  I +  +AK  +     E F  
Sbjct: 480 ------RFGSRPDLLVVDGGKPQLTAAMTQLAELGLD--IPVCGLAKADE-----ELFVP 526

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLL 571
                +VL      LY I+++RDEAHRFAIT HR+ R K    S LDEI G+GP+RKR +
Sbjct: 527 WDDTPVVLPSGSASLYLIKQVRDEAHRFAITFHRQLRDKAMTASVLDEIEGVGPVRKRAV 586

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ FG++K + ++S E +A ++GI + +A +I+    
Sbjct: 587 MRHFGSMKRLRQASAEQIAEVKGIPRAVAQEIFYMLR 623


>gi|269797773|ref|YP_003311673.1| excinuclease ABC, C subunit [Veillonella parvula DSM 2008]
 gi|282849047|ref|ZP_06258436.1| excinuclease ABC, C subunit [Veillonella parvula ATCC 17745]
 gi|269094402|gb|ACZ24393.1| excinuclease ABC, C subunit [Veillonella parvula DSM 2008]
 gi|282581322|gb|EFB86716.1| excinuclease ABC, C subunit [Veillonella parvula ATCC 17745]
          Length = 608

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 189/615 (30%), Positives = 313/615 (50%), Gaps = 34/615 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
               +P  PGVY   D   R++YVGKA NL+ R++SY+ ++ +   ++T M+ +  ++  
Sbjct: 9   KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEV 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EAL+LE  +IK  +P++NI LRDDK++PY+ I+ +   P +Y  R        
Sbjct: 69  IQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF  V +V   +  +++ + LR+C         RPCL + +  C  PC  +IS   Y
Sbjct: 129 YFGPFTDVTSVHVVLKLIRQYYPLRTCKSMKVE---RPCLQYHMHYCEAPCFNKISVPDY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +++ E  +   G    L ++I   M  A     +E A  +RD+L+++  IQ     +  
Sbjct: 186 RKYIDEIIELFEGKPIPLLKEIKSKMEAAAEDLRFEDAARYRDQLSSIEKIQEKQRMVTQ 245

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D   L  + ++AC+Q  F   G+  G   +F++ D +S+   +  +  + +     
Sbjct: 246 RGDLDVLGLAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSSETIMTDFIKQYYGDTNF 305

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354
            P+ +LL  E+ +  LL   F +  G  V ++VP++G K  +I+ A  NA         Q
Sbjct: 306 IPKELLLPMESTDRDLLTEWFTQLKGQHVDVSVPQRGYKMDMIKMAHENAETFLEERRRQ 365

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +K   +   LP +P+R+E +D SH  G   V  MVV       K +YR+
Sbjct: 366 WQHQIDKTGGAVKKLAEILDLPRLPERMECFDISHTQGAETVASMVVFEGGKPAKKEYRR 425

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F L        DD   M  ++ERR+                   +    PD++I+DGGKG
Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 468

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QL+AA  +++ + V + + +IS+AK  +     E F   + E+++L+   P L  +Q++R
Sbjct: 469 QLNAALPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSESIILSHHTPELQLLQQIR 522

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HRK R K+   S LD I GIGP R++ L   F +++ +  +S + LA++E
Sbjct: 523 DEAHRFAITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELANVE 582

Query: 594 GISKKIACKIYNHFH 608
            ++ K A  +YN F 
Sbjct: 583 SMNYKTAETLYNFFR 597


>gi|301793807|emb|CBW36199.1| UvrABC DNA repair system protein C [Streptococcus pneumoniae
           INV104]
 gi|332204639|gb|EGJ18704.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA47901]
          Length = 615

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 168/620 (27%), Positives = 288/620 (46%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY     H  +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRG-IHDTKTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGRPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +   + 
Sbjct: 575 GVPRAVAEAVQRKLNPQETE 594


>gi|148992275|ref|ZP_01821998.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP9-BS68]
 gi|168488302|ref|ZP_02712501.1| excinuclease ABC, C subunit [Streptococcus pneumoniae SP195]
 gi|147928901|gb|EDK79913.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP9-BS68]
 gi|183573193|gb|EDT93721.1| excinuclease ABC, C subunit [Streptococcus pneumoniae SP195]
 gi|332074422|gb|EGI84898.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA17570]
          Length = 614

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPSIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRAVAEAVQRKLNPQGEALP 596


>gi|306836167|ref|ZP_07469152.1| excision endonuclease subunit UvrC [Corynebacterium accolens ATCC
           49726]
 gi|304567950|gb|EFM43530.1| excision endonuclease subunit UvrC [Corynebacterium accolens ATCC
           49726]
          Length = 689

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 183/680 (26%), Positives = 308/680 (45%), Gaps = 82/680 (12%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D   RV+YVGKA NL+ R+ +Y         R   M+   +++ +TV 
Sbjct: 13  TIPTEPGVYKFRDENKRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IKR  P FN++ RDDK++P + ++    +P  + +R        YFG
Sbjct: 73  ASEVEALQLEYTWIKRFDPHFNVMYRDDKTYPMLAVSVGEVVPRAFFYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV ++++ L R F +R+C+  V+       RPCLL  I +C  PC G +S E++
Sbjct: 133 PYSHAWAVRESLDLLTRVFPMRTCSKGVYNRHERLGRPCLLGYIGKCDAPCIGRVSKEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E V+E   F++G    ++ K+ ++M  A    ++E A   RD L A+  I      ++ 
Sbjct: 193 RETVNELVSFMNGNTAGVRRKLVKDMEAAAENLEFERAARLRDDLGAIDKIMEQQAVVFA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------------- 284
                D  +   ++  A +Q      G+ RG   + ++   +   ++             
Sbjct: 253 DGTDADLIAFNSDELEAAVQIFHVRGGRIRGQRGWVVERAGDQATSEPIEEGQPDPALPA 312

Query: 285 ILSYFLRQFYTD-----------------------------------KPCPENILLSEEA 309
           ++  FL QFY+D                                      P  IL+    
Sbjct: 313 LVQNFLIQFYSDAVEREEQEAREDAALAADVPRRGVDQESHMEQRHVHVIPREILVQAMP 372

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMI 365
           EE+  +        G +V + VP++G+KR +++    NA     Q          +    
Sbjct: 373 EESEQVVSLLEDLRGARVDLRVPQRGDKRSLMDTVEKNAKEQLRQHKLKRVGDLTARSAA 432

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L+D      +   P RIE  D SHI G   V  +VV  +    K+ YR++ +        
Sbjct: 433 LQDIQDALGMDQAPLRIECTDISHIQGTDVVASLVVFEDGIPKKSDYRRYRIKEAAGDGH 492

Query: 426 -DDCAMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVIL 469
            +D   +  +  RRF +  ++               EE +     +    F   P + I+
Sbjct: 493 SNDVGSIAEITRRRFKRHNQDKLANPDEEKEESSFAEEKVAEESAEAGRRFAYPPQLFIV 552

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG  Q++AAQ V  +L + + +T++ +AK  +     E +     E ++L      L+ 
Sbjct: 553 DGGAPQVAAAQEVFDELGIVD-VTLVGLAKRLE-----EIWVPGDNEPVILPRNSQALFL 606

Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q++RDEAHRFAIT HR++R K   S  LD I G+GP R+  L++ FG+VK +  +S + 
Sbjct: 607 LQQIRDEAHRFAITYHRQQRSKRMRSSALDAIPGLGPQRRTDLVKHFGSVKKLKAASVDE 666

Query: 589 LASIEGISKKIACKIYNHFH 608
           +  + G   K+A  +Y+  H
Sbjct: 667 ICEVNGFGPKLAQTVYDKLH 686


>gi|118443548|ref|YP_877364.1| excinuclease ABC subunit C [Clostridium novyi NT]
 gi|189038040|sp|A0PYB2|UVRC_CLONN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|118134004|gb|ABK61048.1| excinuclease ABC, C subunit [Clostridium novyi NT]
          Length = 621

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/620 (31%), Positives = 322/620 (51%), Gaps = 19/620 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +PE PGVY M +  G V+YVGKA  L+ R++ Y   S NH  ++  M+  I    +
Sbjct: 7   QLKIIPEKPGVYLMKNSLGEVIYVGKAKVLKNRVRQYFQNSKNHGSKVRAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +PR+NILL+DDK +P++ IT     P ++  R  +     
Sbjct: 67  IITDSEMEALILECNLIKKYRPRYNILLKDDKHYPFLKITTNEDFPRIFVTRVRAKDGAR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           Y GP+    AV +TI  +++ F LR+C  ++  +    +PCL + IK C+ PC G IS E
Sbjct: 127 YLGPYPETSAVYETIELIKKIFPLRTCRLNIKENGEPVKPCLNYHIKLCTAPCAGYISRE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y + + +    L+G ++ +   +   M +A+ +  +E A   RD+L A+  I+      
Sbjct: 187 EYGKTIKKIIDLLNGKDNEVINDLKIKMEKASSELKFEEAASFRDKLLAVEKIRERQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +   D  ++Y  +   C Q  F   G+  G   F L       NA I+S F++ FY 
Sbjct: 247 SSNFENEDFINMYSEEIDLCAQIFFVRDGKIMGREHFILDRSIFGNNADIISNFIKDFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +   E  +  LLE     + G KV I +P++GEK+KI++    NA     + 
Sbjct: 307 GTAFIPKTIYVPEVMDIELLENWLSSKKGSKVSIKIPQKGEKKKILDLVESNAKNTLEQF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +    +  +   LK+      L  IP RIE YD S+I G  +VG M+V  +     + 
Sbjct: 367 KLKLKVDKELYSNTLKELQNILELEEIPNRIEAYDISNIQGVDSVGSMIVFDKGKPKNSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F +    VK  +D   MR +L RRF+  ++  +E    +       F  +PD++++D
Sbjct: 427 YRRFKIKT--VKGANDYDSMREILTRRFTHGLEEIKEIQKRNLLLSGAKFSVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL+KLN+   I +  + K  K         V   + + +   + I+ FI
Sbjct: 485 GGKGQVNIALEVLEKLNI--NIPVCGMVKDDKHKTRG---LVYNNKEINIKSNNKIMQFI 539

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAIT HR  R ++  +S L++I  IG  R++ LLQ FG+V+ I ++S + L
Sbjct: 540 TRVQDEVHRFAITYHRSLRNRRVLHSVLEDIPNIGEKRRKELLQKFGSVENIKKASYDEL 599

Query: 590 ASIEGISKKIACKIYNHFHK 609
                I++K A  I ++F+ 
Sbjct: 600 LDTNSINQKAAKSIIDYFNN 619


>gi|330446241|ref|ZP_08309893.1| excinuclease ABC, C subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490432|dbj|GAA04390.1| excinuclease ABC, C subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 589

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 206/606 (33%), Positives = 329/606 (54%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D AG V+YVGKA +L+KR+ SY  +N    +   ++  I N+  TVT TE EAL+LE 
Sbjct: 1   MYDAAGVVIYVGKAKDLKKRLSSYFRTNVAGEKTRALVKNICNVDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYIL++   K P L  HR     +G YFGP+    AV ++
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYILLSAS-KHPRLSIHRGVKRRKGEYFGPYPDAGAVRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C DSV+ +R+RPCL++QI RCSGPC    IS E+Y + V   + FL G
Sbjct: 120 LHLMQKIFPVRQCEDSVYANRSRPCLMYQIGRCSGPCVEGLISDEEYQQQVQLVRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250
            +  +   +   M QA+   ++E A  +RD++ AL  IQ       +  D      + H+
Sbjct: 180 KDRQVISIMVEKMEQASQALEFERAATYRDQIQALRRIQEQQFVSQDNEDDIDVIGIAHS 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306
             LACI   +   G+  G+ ++F K  +++T  ++L+ F+ Q+Y      +  P  ILLS
Sbjct: 240 NGLACIHGLYIRQGKILGSRSYFPKVPADATLTEVLTGFVTQYYFNQVEGRVIPSAILLS 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           E   +E   +  +  +  G  +      +G + + ++ A  NA  + T K++  ++ Q  
Sbjct: 300 ETLGDEGETIAKALTEMAGRNISFKYNPRGSRAQYLKLAKTNAETALTSKINHRLTIQER 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
                +   L  I  R+E +D SH MG   V   VV  ++G  K +YR++N+    +   
Sbjct: 360 FFALQQALNLKPIS-RMECFDISHTMGEKTVASCVVFNQDGPYKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+S+ ++ ++                PD++ +DGG+GQLS A  V+K 
Sbjct: 417 DDYAAMAQVLERRYSKEMELDK---------------IPDIIFIDGGRGQLSRAYDVVKP 461

Query: 486 --LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  ++ +AKG  R  G+E      GE + +    P L+ IQ +RDE+H  AI+
Sbjct: 462 YIADWPKRPMLVGVAKGTTRKPGLETLIFVTGEEISMPSDSPALHLIQHIRDESHNHAIS 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+++ GIGP R++ LL+  G ++ + ++S E +A + GIS  +A K
Sbjct: 522 GHRAQRAKVRKRSSLEDVEGIGPKRRQALLKYMGGMQELKKASKEEIAKVPGISPALAEK 581

Query: 603 IYNHFH 608
           I +   
Sbjct: 582 IVDALQ 587


>gi|307704357|ref|ZP_07641274.1| excinuclease ABC, C subunit [Streptococcus mitis SK597]
 gi|307622117|gb|EFO01137.1| excinuclease ABC, C subunit [Streptococcus mitis SK597]
          Length = 615

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 168/620 (27%), Positives = 288/620 (46%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMATAAQTMEFERAAEYRDLIQAIGTLRTKQRVMTKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKVLVDTKIVK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKYFKSLTKIKEASVDEIVDV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  +    +     
Sbjct: 575 GVPRAVAEAVQRKLNPQEEE 594


>gi|300853519|ref|YP_003778503.1| excinuclease ABC subunit C [Clostridium ljungdahlii DSM 13528]
 gi|300433634|gb|ADK13401.1| excinuclease ABC, subunit C [Clostridium ljungdahlii DSM 13528]
          Length = 622

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 198/623 (31%), Positives = 323/623 (51%), Gaps = 19/623 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKVLPDKPGVYLMKNSLGEVIYVGKAKILKNRVRQYFQNSKNHSEKVKAMVKHIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+ +PR+NILL+DDK +P I IT     P +   R+       
Sbjct: 67  IVTDSEMEALILECNLIKKYRPRYNILLKDDKGYPLIKITVNEDFPRIISARNMVKDGCK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV +T+  +++ F +R+C  S+     + RPCL + I  C  PCTG I+ E
Sbjct: 127 YFGPYISPSAVYETMEIIKKIFPIRTCRLSIKEGEMKGRPCLNYYIGLCKAPCTGYITKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + V     FLSG N ++ +K+  +M  A+ K ++E A   RD++ A+  I       
Sbjct: 187 EYGKIVSGVMDFLSGKNRDISKKLKEDMEIASEKLEFEKAAELRDKILAVQKIIEKQKIT 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++Y +   +C+Q  F   G+  G   F L+   +    +I+S F+  FY 
Sbjct: 247 TGGFEDEDFINMYSDNVDSCVQVFFSRSGKIIGREHFILENTQDLPKGEIVSNFIEGFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   +   EA+E  LL+     +   +V I +P++GEKR  +     NA  +    
Sbjct: 307 GTAYIAKTIYVPEADEIELLQNWLSMKKDARVYIKIPQKGEKRATLNMVEENAKTTLKNF 366

Query: 356 ----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
               +  +  +   L++ T+   +  IP RIE YD S+I G  +VG MVV        + 
Sbjct: 367 KLKLIQDKKMYNTALEELTEALDMEDIPHRIEAYDISNIQGVDSVGTMVVFENGRAKNSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-QEYSFPSWPDVVILD 470
           YR+F    N VK  +D   MR +L RRF       E +     K     F ++PD++++D
Sbjct: 427 YRRF--KINSVKGANDYDSMREILTRRFKHGFDEIERIKKRNLKFSAGKFCAFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++AA  VLKK N++  I +  + K  +         + K E ++++    ++  I
Sbjct: 485 GGKGQVNAALEVLKKFNID--IPVCGMVKDDRHRTRG---LIYKNEEVLISPHSNVIKLI 539

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAIT HR  R K+  +S L++I  +G  R++ LL+ F +++ I +++   L
Sbjct: 540 ARIQDEVHRFAITYHRSLRNKRVLHSVLEDIPNVGNKRRKELLKKFESIENIKKATMNEL 599

Query: 590 ASIEGISKKIACKIYNHFHKNTS 612
                I ++ A  I ++F KN +
Sbjct: 600 MDTPSIDRRTAESIISYFKKNEN 622


>gi|262393870|ref|YP_003285724.1| excinuclease ABC subunit C [Vibrio sp. Ex25]
 gi|262337464|gb|ACY51259.1| excinuclease ABC subunit C [Vibrio sp. Ex25]
          Length = 588

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 200/607 (32%), Positives = 315/607 (51%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY      + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTRALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSIHRGAKKRKGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193
           ++ LQ+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS E+Y E V   + FL G
Sbjct: 120 LHLLQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVDTIISDEEYAELVGFVRMFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHN 250
            +  + +++   M  A+ +  +E A   RD++ A+  +Q       + MD          
Sbjct: 180 KDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306
             +ACI       G+  G+ + F K    ++  ++   FL Q+Y         P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIILN 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           +E  E+ + ++ +  +  G KV       G + + ++ +  NA  + T K++ +++    
Sbjct: 300 QELAEDIAPIQKALSEVAGRKVHFHTSPTGSRARYLKLSNTNALTAITTKINHKMTINQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
                +   L  I  R+E +D SH MG S +   VV    G VK +YR++N+    +   
Sbjct: 360 FHALRETLKLESIA-RMECFDISHTMGESTIASCVVFNNEGPVKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M   LERR+S+ +  E+                PD++ +DGGKGQL+ A  ++ +
Sbjct: 417 DDYAAMGQALERRYSKQLDVEK---------------IPDIIFIDGGKGQLNRAHDIISQ 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  +I IAKG  R  G+E      G+   L      L+ IQ +RDE+H  AI 
Sbjct: 462 YWGDWPKRPIMIGIAKGVTRKPGLETLITVDGDEFHLPSDASALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I GIGP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 GHRAKRGKTRRTSALEGIEGIGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEI 581

Query: 603 IYNHFHK 609
           I+    +
Sbjct: 582 IFQALKQ 588


>gi|194334457|ref|YP_002016317.1| excinuclease ABC subunit C [Prosthecochloris aestuarii DSM 271]
 gi|229558464|sp|B4S9K0|UVRC_PROA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194312275|gb|ACF46670.1| excinuclease ABC, C subunit [Prosthecochloris aestuarii DSM 271]
          Length = 616

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 179/629 (28%), Positives = 299/629 (47%), Gaps = 45/629 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
               +P CPGVYQ  +  G ++YVGKA N++ R++SY     H + +   +++ I +I  
Sbjct: 15  KLSNLPTCPGVYQFKNNQGTIIYVGKAKNIRSRVRSYFREGPHISGKTKVLVNHIADIDI 74

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +EVEAL+LE N+IK LKPR+NI L+DDK++PY++IT+    P +   R       +
Sbjct: 75  ILTSSEVEALILENNLIKDLKPRYNINLKDDKTYPYLVITN-EAFPRILITRQVKRDGST 133

Query: 121 YFGPFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+     +   ++ +      R   L+   +++   R   CL + I  C GPC G+ 
Sbjct: 134 YFGPYTEARQLRSVLDLISTIFPVRKCKLKLTKENIESGRFSVCLNYHIHTCKGPCEGKQ 193

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
             E Y+  + E K  L G    L   ++  M++   +  +E A   + ++  L       
Sbjct: 194 REEDYLRMIEEIKGLLKGKTGALIRTLSAEMHRYADELRFEEAAELKIQIEGLRKYTERQ 253

Query: 236 DSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
             +       D F +  +++ AC        G+  G+   +     +  +  +L   L +
Sbjct: 254 KVVSKDPVDRDVFGIAQHQDDACGVIFKIREGKLLGSQRMYFSNVDDEQHETLLRKCLEK 313

Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           +Y + P   P+ I L    ++  ++ +         ++  VPK GEK K++   + NA  
Sbjct: 314 YYLETPDLIPQEIFLPLPIDDDEVMALRELTGDI-NLRFIVPKIGEKAKLVAMCIDNARH 372

Query: 351 SHTQKLSTEISHQMI------LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
              + L  +     +      L+   +   L   P+RIE +DNSH  G      MV    
Sbjct: 373 HLEEYLIEKQKRGELSRIVPALQALQETLHLSRQPERIECFDNSHFQGTDYTSSMVCFVG 432

Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
               K+ YRKF L  N  +  DD A M+  + RR+S  +++E                 P
Sbjct: 433 GKPRKSDYRKFKL--NSFEGSDDYAAMQEAVTRRYSGSLQDE--------------LPLP 476

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGGKGQ++ A  VL++L +E  I +I +AK  +     E F     +   L    
Sbjct: 477 DLIVIDGGKGQVNTAWKVLQELGLE--IPVIGLAKRLE-----EIFLPNTPDPYNLAKTS 529

Query: 525 PILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           P L  +Q++RDEAHRFAIT HRK R K+   + L +I GIG      LL+ FG+++ I++
Sbjct: 530 PALKLLQQIRDEAHRFAITYHRKLRTKRTIQTGLTDIAGIGEKSAMKLLEHFGSIEQIAK 589

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTS 612
           +  E + ++ G   K A  I ++F K   
Sbjct: 590 AEKEEILAVTG--PKTAEAILSYFRKKQP 616


>gi|227503573|ref|ZP_03933622.1| excinuclease ABC subunit C [Corynebacterium accolens ATCC 49725]
 gi|227075609|gb|EEI13572.1| excinuclease ABC subunit C [Corynebacterium accolens ATCC 49725]
          Length = 689

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 183/680 (26%), Positives = 308/680 (45%), Gaps = 82/680 (12%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D   RV+YVGKA NL+ R+ +Y         R   M+   +++ +TV 
Sbjct: 13  TIPTEPGVYKFRDENKRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IKR  P FN++ RDDK++P + ++    +P  + +R        YFG
Sbjct: 73  ASEVEALQLEYTWIKRFDPHFNVMYRDDKTYPMLAVSVGEVVPRAFFYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV ++++ L R F +R+C+  V+       RPCLL  I +C  PC G +S E++
Sbjct: 133 PYSHAWAVRESLDLLTRVFPMRTCSKGVYNRHERLGRPCLLGYIGKCDAPCIGRVSKEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E V+E   F++G    ++ K+ ++M  A    ++E A   RD L A+  I      ++ 
Sbjct: 193 RETVNELVSFMNGNTAGVRRKLVKDMEAAAENLEFERAARLRDDLGAIDKIMEQQAVVFA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------------- 284
                D  +   ++  A +Q      G+ RG   + ++   +   ++             
Sbjct: 253 DGTDADLIAFNSDELEAAVQIFHVRGGRIRGQRGWVVERAGDQATSEPIEEGQPDPALPA 312

Query: 285 ILSYFLRQFYTD-----------------------------------KPCPENILLSEEA 309
           ++  FL QFY+D                                      P  IL+    
Sbjct: 313 LVQNFLIQFYSDAVEREEQEAREDAALAADVPRRGVDQESHMEQRHVHVIPREILVQAMP 372

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMI 365
           EE+  +        G +V + VP++G+KR +++    NA     Q          +    
Sbjct: 373 EESEQVVSLLEDLRGARVDLRVPQRGDKRSLMDTVEKNAKEQLRQHKLKRVGDLTARSAA 432

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L+D      +   P RIE  D SHI G   V  +VV  +    K+ YR++ +        
Sbjct: 433 LQDIQDALGMDQAPLRIECTDISHIQGTDVVASLVVFEDGIPKKSDYRRYRIKEAAGDGH 492

Query: 426 -DDCAMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVIL 469
            +D   +  +  RRF +  ++               EE +     +    F   P + I+
Sbjct: 493 SNDVGSIAEITRRRFKRHNQDKLANPDEEKEESSFAEEKVAEESAEAGRRFAYPPQLFIV 552

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG  Q++AAQ V  +L + + +T++ +AK  +     E +     E ++L      L+ 
Sbjct: 553 DGGAPQVAAAQEVFDELGIVD-VTLVGLAKRLE-----EIWVPGDDEPVILPRNSQALFL 606

Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q++RDEAHRFAIT HR++R K   S  LD I G+GP R+  L++ FG+VK +  +S + 
Sbjct: 607 LQQIRDEAHRFAITYHRQQRSKRMRSSALDAIPGLGPQRRTDLVKHFGSVKKLKAASVDE 666

Query: 589 LASIEGISKKIACKIYNHFH 608
           +  + G   K+A  +Y+  H
Sbjct: 667 ICEVNGFGPKLAQTVYDKLH 686


>gi|332361103|gb|EGJ38907.1| excinuclease ABC subunit C [Streptococcus sanguinis SK1056]
          Length = 611

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 169/620 (27%), Positives = 291/620 (46%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D    ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNDTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C       + S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICHVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M       ++E A  +RD + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGVAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A  NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           G+ + +A  ++   +  T  
Sbjct: 575 GVPRAVAEAVWEKLNPKTQE 594


>gi|325687577|gb|EGD29598.1| excinuclease ABC subunit C [Streptococcus sanguinis SK72]
          Length = 611

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 171/622 (27%), Positives = 294/622 (47%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKFHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRALVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNIAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +  T    
Sbjct: 575 GVPRAVAEAVREKLNPKTQEQE 596


>gi|229829567|ref|ZP_04455636.1| hypothetical protein GCWU000342_01664 [Shuttleworthia satelles DSM
           14600]
 gi|229791556|gb|EEP27670.1| hypothetical protein GCWU000342_01664 [Shuttleworthia satelles DSM
           14600]
          Length = 638

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 191/622 (30%), Positives = 323/622 (51%), Gaps = 21/622 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
             +++P+ PGVY M D   +++YVGKA +L KR+  Y  +++    +   M+ +I+   +
Sbjct: 25  ELKKLPDAPGVYIMHDATDQIIYVGKAVSLTKRVHQYFQASHDEGVKKRQMVERISWFEY 84

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N LLRDDK++PYI +T +   P +   R        
Sbjct: 85  IVTDSELEALVLENNLIKEHRPKYNTLLRDDKTYPYIKVTLQEAYPRILFVRRVKKDGAK 144

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           Y+GPF+S +A  +TI  +Q+ + +R+C   +  +  + RPCL + +K+C  PC G+IS E
Sbjct: 145 YYGPFSSAEATHQTIELVQKLYRIRTCNRRLPENIGKDRPCLNYHMKQCDAPCDGKISQE 204

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            YME VH+A +FL G    +  ++   MN A    D+E A  +RD L A+ H        
Sbjct: 205 DYMEHVHDALRFLDGDTGTVSRELTARMNDAAAAMDFERAAEYRDLLKAIEHTAQRQKIT 264

Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +       A +   +   G+  G   F +   ++    ++L  F+ QFY 
Sbjct: 265 RYDEEDLDVIAAAVEGEDAVVSVFYIRAGKMIGRDHFAVNVRADEGEKEVLGAFVHQFYA 324

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             P  P  I L  E +++ L +     + G +V +  P++G+  ++++ A  NA     +
Sbjct: 325 GTPFIPREICLPIEIDDSRLTQDWLSDKQGQRVYLRYPRRGKNARLMDLAAKNAQMIMNR 384

Query: 355 KL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                   E      ++   +   L  +  R+E YD SHIMG + VG MVV       ++
Sbjct: 385 DQEKIKRQEGRTIGAMRQIAQLLGLERVE-RMEAYDISHIMGFATVGSMVVFERGRAKRS 443

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVIL 469
            YRKF L    ++  DD A MR VL RRF   ++ +E L      ++  +F  +PD++++
Sbjct: 444 DYRKFRLKT--IEGPDDYASMREVLTRRFRHGMEEKEKLREKQMDEKLGAFTKFPDILMM 501

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+  A+ VL++L ++  I +  + K    +     F       L ++        
Sbjct: 502 DGGKGQVHIAEEVLRELKLD--IPVAGMVKDDHHNTRGIYFH---DRELPIDKSSEGFQL 556

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I RL+DEAHRFAI+ H+  R  A  +S LD+I GIGP R++ L++ F   + ++  S E 
Sbjct: 557 ISRLQDEAHRFAISYHKSLRSAAQVHSFLDDIPGIGPARRKALMRRFDDAQAMAAESVED 616

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           LA+ +G+++  A  +++  H++
Sbjct: 617 LAASDGMNRTSAQAVWDFLHRH 638


>gi|313892820|ref|ZP_07826401.1| excinuclease ABC, C subunit [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442751|gb|EFR61162.1| excinuclease ABC, C subunit [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 608

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 186/615 (30%), Positives = 311/615 (50%), Gaps = 34/615 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
               +P  PGVY   D   R++YVGKA NL+ R++SY+ ++ +   ++  M+ +  ++  
Sbjct: 9   KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVAAMMKRAVDVEI 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EAL+LE  +IK  +P++NI LRDDK++PY+ I+ +   P +Y  R        
Sbjct: 69  IQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF  V +V   +  +++ + LR+C         RPCL + +  C  PC  +IS   Y
Sbjct: 129 YFGPFTDVTSVHVVLKLIRQYYPLRTCKSMKVE---RPCLQYHMHYCEAPCFNKISVSDY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +++ E  +   G    L ++I   M  A  +  +E A  +RD+L ++  IQ     +  
Sbjct: 186 GKYIDEIVELFEGKPIPLLKEIKEKMELAAEELRFEDAARYRDQLTSIEKIQEKQRMVTQ 245

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D   L  + ++AC+Q  F   G+  G   +F++ D +S    +  +  + +     
Sbjct: 246 RGDLDVLGLAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSAETIMTDFIKQYYGDTNF 305

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354
            P+ +LL  ++ +  LL   F +  G  V ++VP++G K  +I+ A  NA         Q
Sbjct: 306 IPKELLLPMDSTDRDLLREWFTQLKGQNVDVSVPQRGYKMDMIKMAHENAETFLEERRRQ 365

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +K   +   LP +P+R+E +D SH  G   V  MVV       K +YR+
Sbjct: 366 WQHQIDKTGGAVKKLAEVLDLPRLPERMECFDISHTQGAETVASMVVFEGGKPAKKEYRR 425

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F L        DD   M  ++ERR+ +                 +    PD++I+DGGKG
Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRYGK----------------ETDWPMPDLIIIDGGKG 468

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QL+AA  +++ + V + + +IS+AK  +     E F   + E+++L+   P L  +Q++R
Sbjct: 469 QLNAALPLIRGVGVTD-VPVISLAKRIE-----EVFVEGQSESIILSHHSPELQLLQQIR 522

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HRK R K+   S LD I GIGP R++ L   F +++ +  +S + L+ +E
Sbjct: 523 DEAHRFAITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELSKVE 582

Query: 594 GISKKIACKIYNHFH 608
            ++ K A  +YN F 
Sbjct: 583 SMNYKTAEALYNFFR 597


>gi|322385600|ref|ZP_08059244.1| excinuclease ABC subunit C [Streptococcus cristatus ATCC 51100]
 gi|321270338|gb|EFX53254.1| excinuclease ABC subunit C [Streptococcus cristatus ATCC 51100]
          Length = 611

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 171/622 (27%), Positives = 295/622 (47%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 10  KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 68

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 69  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-EIYPRLIITRQVKKDGGLY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  + C +       + C  + + +C      +  S+ + 
Sbjct: 128 FGPYPDVGAANEIKRLLDRIFTFKKCTNPP----AKVCFYYHLGQCEAHTICKRDSQYFK 183

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   MN+     ++E A  +RD + A+  ++     +   
Sbjct: 184 NMAQEVSDFLKGQDNKIIDELRDKMNKTAAAMEFERAAEYRDLIQAIGTLRTKQRVMAKD 243

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 244 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 303

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 304 KPNEILIPADIDEEAVRAVVDTKVVK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 356

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  K   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 357 LEKSVEKTQGAIENLGKLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 415

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 416 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++   +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 460 QVNIAKEVIQS-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 517

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 518 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 576

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    ++     P
Sbjct: 577 GVPRAVAEAVQAKLNQTEPSRP 598


>gi|322389721|ref|ZP_08063268.1| excinuclease ABC subunit C [Streptococcus parasanguinis ATCC 903]
 gi|321143560|gb|EFX38991.1| excinuclease ABC subunit C [Streptococcus parasanguinis ATCC 903]
          Length = 610

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 171/614 (27%), Positives = 293/614 (47%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRRVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + + +C            + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHLGQCMAHTVCHKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + +++   MN A    ++E A  +RD + A+  ++     +   
Sbjct: 182 GMEQEVSDFLKGQDDKIIDELKLKMNTAAQNMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 IPNEILIPQDIDEEAVKALVDTKVLK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  K   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSMEKTQGAIENLGKLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+S+++++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYSRVMRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLQVIELSRTSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I  ++ + + ++ 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQLLMKHFKSLTKIKEATVDEIVTV- 574

Query: 594 GISKKIACKIYNHF 607
           GI + +A  +    
Sbjct: 575 GIPRPVAEAVQAKL 588


>gi|303229550|ref|ZP_07316338.1| excinuclease ABC, C subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302515675|gb|EFL57629.1| excinuclease ABC, C subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 612

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 187/615 (30%), Positives = 312/615 (50%), Gaps = 34/615 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
               +P  PGVY   D   R++YVGKA NL+ R++SY+ ++ +   ++T M+ +  ++  
Sbjct: 9   KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEI 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EAL+LE  +IK  KP++NI L+DDK++PY+ I+ +   P +Y  R        
Sbjct: 69  IQTKTEMEALILENTLIKEHKPKYNISLKDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF  V AV   +  +++ F LR+C         RPCL + +  C  PC  +IS   Y
Sbjct: 129 YFGPFTDVTAVHVVLKLIRQYFPLRTCKSMKVE---RPCLQYHMHYCEAPCFHKISVPDY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +++ E  +   G    L ++I   M +A  +  +E A  +RD+L ++  IQ     +  
Sbjct: 186 RKYIDEIIELFEGKPIPLLKEIKEKMEEAAEELRFEDAARYRDQLTSIEKIQEKQRMVTQ 245

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D   +  +  LAC+Q  F   G+  G   +F++ + +S    +  +  + +     
Sbjct: 246 RGDLDVLGIAVDGQLACVQLLFIRGGRLLGRENYFVQNEGDSEETIMTDFIKQYYGDTTF 305

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354
            P+ +LL  E+ E  L +  F    G +V + VP++G K  +I+ A  NA         Q
Sbjct: 306 IPKELLLPMESSEQHLFKDWFSDMKGQQVDVLVPQRGYKMDMIKMAHENAETFLEERRRQ 365

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +K   +   LP +P+R+E +D SH  G   V  MVV       K +YR+
Sbjct: 366 WQYQIDKSGGAVKKLAEVLDLPRLPERMECFDISHTQGSETVASMVVFEGGKPAKKEYRR 425

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F L        DD   M  ++ERR+                   +    PD++I+DGGKG
Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 468

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QL+A+  +++ + V + + +IS+AK  +     E F   + ++++L+   P L  +Q++R
Sbjct: 469 QLNASIPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSDSIILSHHSPELQLLQQIR 522

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HRK R K+   S LD I+GIGP R++ L   F +++ + ++S + LA ++
Sbjct: 523 DEAHRFAITYHRKLRGKRNLESLLDHIDGIGPKRRKALWAHFNSLEAMKKASIDELAKVD 582

Query: 594 GISKKIACKIYNHFH 608
            ++ K A  +YN F 
Sbjct: 583 SMNYKTAETLYNFFR 597


>gi|303260110|ref|ZP_07346083.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP-BS293]
 gi|303261294|ref|ZP_07347242.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS292]
 gi|303263959|ref|ZP_07349880.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS397]
 gi|303265949|ref|ZP_07351845.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS457]
 gi|303268332|ref|ZP_07354129.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS458]
 gi|302637428|gb|EFL67915.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS292]
 gi|302638805|gb|EFL69267.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP-BS293]
 gi|302642170|gb|EFL72520.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS458]
 gi|302644533|gb|EFL74784.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS457]
 gi|302646364|gb|EFL76590.1| excinuclease ABC subunit C [Streptococcus pneumoniae BS397]
          Length = 614

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +   + + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMSHTICKKDEDYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDNLKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596


>gi|327470893|gb|EGF16349.1| excinuclease ABC subunit C [Streptococcus sanguinis SK330]
          Length = 609

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 169/615 (27%), Positives = 293/615 (47%), Gaps = 41/615 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 DLAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLLNLAIKNARVSLHQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFH 608
           G+ + +A  +    +
Sbjct: 575 GVPRAVAEAVREKLN 589


>gi|227329600|ref|ZP_03833624.1| excinuclease ABC subunit C [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 588

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 206/606 (33%), Positives = 323/606 (53%), Gaps = 31/606 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D    V+YVGKA +L+KR+ SY  S+  + +   ++  I +I  T+T TE EALLLE 
Sbjct: 1   MYDAGNTVIYVGKAKDLKKRLASYFRSHVASRKTEALVKSIKHIDVTITHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGPF + +AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPMIFLS-GDAHPRLAVHRGAKHAKGEYFGPFPNGNAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E Y + V   + FLSG
Sbjct: 120 LILLQKLFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEEDYQQQVDYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFSLYHNK 251
            +  +  ++   M  A+    +E A   RD++ A+  +        +   +D  S+  + 
Sbjct: 180 KDQQVLNQLISRMEAASRDLHFEDAARIRDQIQAVRRVTEKQFVSGDGEDLDVISVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            +AC+   F   G+  G+ ++F K    +   +++  F+ QFY      +  P  ILL  
Sbjct: 240 GMACVYVLFIRQGKVLGSRSYFPKVPGGTELGEVVQTFVGQFYLQGSLGRTLPTEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              +  LL  S     G KV+I    +G++ + ++ A  NA  +   KLS + +    L 
Sbjct: 300 TLPDKDLLTESLTAVAGRKVQIQTKPRGDRARYLKLARTNAATALVTKLSQQSTIHQRLA 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
                  LP    R+E +D SH MG   V   VV   NG ++++YR++N+  + +   DD
Sbjct: 360 ALANVLQLP-EIHRMECFDISHTMGEQTVASCVVFDANGPLRSEYRRYNI--SGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL RR+ + + + +                PDV+++DGGKGQL  AQ V   L 
Sbjct: 417 YAAMAQVLRRRYGKALDDSK---------------IPDVIVIDGGKGQLGQAQAVFDSLQ 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   +N+  ++ +AKG  R AG+E  F +  GE + L    P L+ IQ +RD++H  AI 
Sbjct: 462 VSWDKNKPLLLGVAKGSDRKAGLETLFFESTGEGMALPPDSPALHVIQHIRDDSHDHAIG 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRK+R K    S L+ I G+GP R++ LL+  G ++ +  +S E +A++ GIS  +A K
Sbjct: 522 GHRKKRAKVRNTSTLELIEGVGPKRRQTLLKYMGGLQPLMNASIEEIANVPGISHALAEK 581

Query: 603 IYNHFH 608
           I++   
Sbjct: 582 IFHALK 587


>gi|225389831|ref|ZP_03759555.1| hypothetical protein CLOSTASPAR_03579 [Clostridium asparagiforme
           DSM 15981]
 gi|225044108|gb|EEG54354.1| hypothetical protein CLOSTASPAR_03579 [Clostridium asparagiforme
           DSM 15981]
          Length = 622

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 193/617 (31%), Positives = 313/617 (50%), Gaps = 24/617 (3%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTCTEVEALLLE 73
           M +    ++YVGKA +L+ R++ Y  S+ N T +I  M+S I    + +T +E+EAL+LE
Sbjct: 1   MHNNRDEIIYVGKAISLKNRVRQYFQSSRNKTAKIEQMVSHIAWFEYILTDSELEALVLE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVDAVE 132
            N+IK  +PR+N +L+DDK++PYI  T   + P L   RD        YFGP+ S  AV+
Sbjct: 61  CNLIKEHRPRYNTMLKDDKTYPYIKATVGEEFPRLLFSRDMKKDGKSRYFGPYTSAGAVK 120

Query: 133 KTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKF 190
            T++ + + + +R+C  ++ R   + RPCL + IK+C  PC G IS E Y++   +A  F
Sbjct: 121 DTLDLIHKLYRIRTCNRNLPRDTGKERPCLNYHIKQCDAPCQGYISREDYLKSFGQALDF 180

Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSL 247
           L+G    L + +   MNQA+   ++E AI +R+ L ++  +        +     D  ++
Sbjct: 181 LNGRYAPLIKSLEEKMNQASEDMEFERAIEYRELLNSVKQVAQKQKITSSGREDRDIIAM 240

Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPENILLS 306
             ++  A +Q  F   G+  G   F L+  +   + +IL  F++QFY   P  P  + L 
Sbjct: 241 ARDEQDAVVQVFFIREGKLIGRDHFHLQAATAENDGEILDSFIKQFYAGTPFIPRELWLQ 300

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISH 362
               +  ++     ++ G KVKI VPK+GEK +++E A  NA     +   +    E+  
Sbjct: 301 VPVMDEEVISRWLTERRGQKVKIVVPKKGEKERLVELAARNAVLVLSQDKERIKKEELRT 360

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              +        L  +  RIE +D S+  G  +VG MVV  +    ++ YRKF +    V
Sbjct: 361 IGAMNQVGGLIGLDGVR-RIEAFDISNTSGVESVGSMVVYEDGRPKRSDYRKFKIRT--V 417

Query: 423 KTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           K  DD A MR VL RRFS  ++   E+          SF  +PD++++DGG+GQ++ A  
Sbjct: 418 KGPDDYASMREVLTRRFSHGLREVREHRESGEDLSAGSFTRFPDLIMMDGGRGQVNIALE 477

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           VL  L +   I +  + K                  + ++        I R++DEAHRFA
Sbjct: 478 VLNSLGLS--IPVCGMVKDDFHRTRG---LYYNNVEVPIDRHSEGFRLITRIQDEAHRFA 532

Query: 542 ITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I  HR  R K    S LD+I GIGP R++ L++ F  ++ I  +  E LA +  ++++ A
Sbjct: 533 IEYHRSLRGKGQVKSVLDDIPGIGPARRKALMREFKDIEAIRAAEVEDLAKVPQMNERAA 592

Query: 601 CKIYNHFHKNT--SHTP 615
            ++Y  F K    S  P
Sbjct: 593 RQVYEFFRKPAVGSEAP 609


>gi|294791679|ref|ZP_06756827.1| excinuclease ABC subunit C [Veillonella sp. 6_1_27]
 gi|294456909|gb|EFG25271.1| excinuclease ABC subunit C [Veillonella sp. 6_1_27]
          Length = 608

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 187/615 (30%), Positives = 311/615 (50%), Gaps = 34/615 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
               +P  PGVY   D   R++YVGKA NL+ R++SY+ ++ +   ++T M+ +  ++  
Sbjct: 9   KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEV 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EAL+LE  +IK  +P++NI LRDDK++PY+ ++ +   P +Y  R        
Sbjct: 69  IQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKVSVQEDYPRVYMTRRLERDGAK 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF  V +V   +  +++ + LR+C         RPCL + +  C  PC  +IS   Y
Sbjct: 129 YFGPFTDVTSVHVVLKLIRQYYPLRTCKSMKVE---RPCLQYHMHYCEAPCFNKISVPDY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +++ E  +   G    L ++I   M  A     +E A  +RD+L+++  IQ     +  
Sbjct: 186 RKYIDEIIELFEGKPIPLLKEIKSKMEAAAEDLRFEDAARYRDQLSSIEKIQEKQRMVTQ 245

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D   L  + ++AC+Q  F   G+  G   +F++ D +S+   +  +  + +     
Sbjct: 246 RGDLDVLGLAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSSETIMTDFIKQYYGDTNF 305

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354
            P+ +LL  E+ +  LL   F +  G  V ++VP++G K  +I+ A  NA         Q
Sbjct: 306 IPKELLLPMESTDRDLLTEWFTQLKGQHVNVSVPQRGYKMDMIKMAHENAETFLEERRRQ 365

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +K   +   LP +P+R+E +D SH  G   V  MVV       K +YR+
Sbjct: 366 WQHQIDKTGGAVKKLAEILDLPRLPERMECFDISHTQGTETVASMVVFEGGKPAKKEYRR 425

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F L        DD   M  ++ERR+                   +    PD++I+DGGKG
Sbjct: 426 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 468

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QL+AA  +++ + V + + +IS+AK  +     E F   + E+++L+   P L  +Q++R
Sbjct: 469 QLNAALPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSESIILSHHTPELQLLQQIR 522

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HRK R K+   S LD I GIGP R++ L   F +++ +  +S + L  +E
Sbjct: 523 DEAHRFAITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELLKVE 582

Query: 594 GISKKIACKIYNHFH 608
            ++ K A  +YN F 
Sbjct: 583 SMNYKTAETLYNFFR 597


>gi|256159427|ref|ZP_05457202.1| excinuclease ABC subunit C [Brucella ceti M490/95/1]
 gi|265997862|ref|ZP_06110419.1| UvrABC system protein C [Brucella ceti M490/95/1]
 gi|262552330|gb|EEZ08320.1| UvrABC system protein C [Brucella ceti M490/95/1]
          Length = 555

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 288/554 (51%), Positives = 382/554 (68%), Gaps = 5/554 (0%)

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            F VT TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +
Sbjct: 1   EFVVTRTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRK 60

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G YFGPFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E
Sbjct: 61  GDYFGPFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDE 120

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y   V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H    
Sbjct: 121 DYAGLVAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGIN 180

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY 
Sbjct: 181 PQTVEEADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYD 240

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           DKPCP+ +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++
Sbjct: 241 DKPCPKLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRR 300

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+   S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKF
Sbjct: 301 LAETSSQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKF 360

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+   D+   DD  MMR V+ERRFS+L+K         +  + +FP+WPDV+++DGG+GQ
Sbjct: 361 NIRSTDITPGDDFGMMREVIERRFSRLVKEPGTPAGEVENPD-AFPAWPDVILIDGGQGQ 419

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           + A + +L K+ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRD
Sbjct: 420 VGAVRQILGKMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRD 479

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+G
Sbjct: 480 EAHRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDG 539

Query: 595 ISKKIACKIYNHFH 608
           IS+ +A  I++HF 
Sbjct: 540 ISEAMARAIHDHFR 553


>gi|222110392|ref|YP_002552656.1| excinuclease ABC subunit c [Acidovorax ebreus TPSY]
 gi|221729836|gb|ACM32656.1| excinuclease ABC, C subunit [Acidovorax ebreus TPSY]
          Length = 657

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 208/650 (32%), Positives = 315/650 (48%), Gaps = 55/650 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D    +LYVGKA NL+KR+ SY    +   RI HM+ +I  +  TV  +
Sbjct: 16  LPPLPGVYRYFDAQNVLLYVGKARNLKKRVSSYFSKQHGGTRIGHMVGRIARLETTVVRS 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRDS 114
           E EALLLE N+IK L P++NIL RDDKS+PY+ IT                P +  +R +
Sbjct: 76  EAEALLLENNLIKSLGPKYNILFRDDKSYPYLKITGVSAKDGTGDAPGQCYPRMAYYRGA 135

Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
              +  YFGP+    AV+++I  LQ+ F LR+C D+VF +RTRPCLL+QIKRCS PC G 
Sbjct: 136 VDKRHRYFGPYPGAWAVKESIQLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSAPCVGL 195

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           IS   Y   V  A+  L G    L + +   M     K ++E A   R+++ AL+ + + 
Sbjct: 196 ISPTAYAADVRSAEAMLLGETQELLQTLEERMLAYAEKLEFEQAAEVRNQITALARVLHQ 255

Query: 235 NDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST---------- 281
                     +D  ++      AC+       G++ G   +F     E+T          
Sbjct: 256 QAVETASDKDVDILAVKVAGGRACVNLAMVRGGRHLGDRPYFPVHVEEATGVFQLETRED 315

Query: 282 -----------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYG 324
                             AQIL+ F+ Q Y   P P  ++ SE  +   L      +Q G
Sbjct: 316 APDNLMVEEAGGLEQSVPAQILAAFIAQHYLGVPLPPTLITSEPVDPALLW--VLAQQTG 373

Query: 325 YKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH---IPKR 381
            +  +    + ++R  +E A  NA     + L+ E S +   +   +   L         
Sbjct: 374 VRATVVHQPREQRRIWLEMAEQNAQIQLARLLAEEGSQRARTRALAEALDLEAESLDDLT 433

Query: 382 IEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQ 441
           IE +D SH  G +     VV   +     +YR+F      +   DD A MR VL RR+S+
Sbjct: 434 IECFDISHTAGEATQASCVVFHHHKMQSGEYRRF--KIEGITPGDDYAAMRQVLMRRYSK 491

Query: 442 LIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501
           + + +              P  PD+V++DGGKGQ+S A+ V ++L ++    I+ + KG 
Sbjct: 492 VAEAQREAGGAEVTNA---PRLPDLVLVDGGKGQVSMARDVFQELGLDIS-RIVGVEKGE 547

Query: 502 KRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLD 558
            R  G+E+     G + + L      L  + ++RDEAHRFAIT  R  R K     S L+
Sbjct: 548 GRKVGLEELVFADGRDKVYLGRDSAALMLVAQIRDEAHRFAITGMRAARAKVRVGGSRLE 607

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +I G+GP ++  LLQ FG V+ ++ +S + LA++EGIS  +A +IY    
Sbjct: 608 DIPGVGPKKRARLLQRFGGVRGVADASVDDLATVEGISHDLAEEIYRALR 657


>gi|260779031|ref|ZP_05887923.1| excinuclease ABC subunit C [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605195|gb|EEX31490.1| excinuclease ABC subunit C [Vibrio coralliilyticus ATCC BAA-450]
          Length = 588

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 201/607 (33%), Positives = 315/607 (51%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY      + +   ++S I+ I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFVS-GHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS E Y E V   + FL G
Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSSIISDEDYAELVGFVRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHN 250
            +  +   +   M  A+    +E A   RD++ A+  +Q       +  D          
Sbjct: 180 KDQQVLTTLVEKMELASKSLKFEDAAKFRDQIQAIRRVQEQQFVSEDSQDDMDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306
             +AC+       G+  G+ + F K  +++T  ++   FL Q+Y         P  I+L+
Sbjct: 240 NGIACVHILMIRQGKILGSRSHFPKIPNDTTQEEVFYSFLSQYYLSHNEARTIPTRIILN 299

Query: 307 EEAEETSLL-EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
               E SL  + +  +  G KV   V   G + + ++ +  NA  + T K++ +++    
Sbjct: 300 SGLMEESLPLQEALGEIAGRKVNFHVNPTGTRGRYLKLSNTNALTAITTKINHKMTISQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K+  +   +  I  R+E +D SH MG S +   VV  + G VK +YR++N+    +   
Sbjct: 360 FKELREVLGMDIIT-RMECFDISHTMGESTIASCVVFNQEGPVKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M   LERR+S+ +  E+                PD+V +DGGKGQL+ A  ++ +
Sbjct: 417 DDYAAMGQALERRYSKQLDVEK---------------IPDIVFIDGGKGQLNRAFEIISQ 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  +I IAKG  R  G+E      GE   L    P L+ +Q +RDE+H  AI 
Sbjct: 462 YWGDWPKRPRLIGIAKGVTRKPGLETLITTDGEEFNLPSDAPALHLMQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 GHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELQRASVEEIAKVPGISVSLAEN 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|315612731|ref|ZP_07887642.1| excision endonuclease subunit UvrC [Streptococcus sanguinis ATCC
           49296]
 gi|315314841|gb|EFU62882.1| excision endonuclease subunit UvrC [Streptococcus sanguinis ATCC
           49296]
          Length = 615

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 167/619 (26%), Positives = 290/619 (46%), Gaps = 43/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICQKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M +A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKGKMAKAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGADDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           Q++ A+  +  +L ++  I I  + K  K     E  F    E + L+      + +QR+
Sbjct: 458 QVNIAKQVIQDELGLD--IPIAGLQKNDKHQT-HELLFGDPLEVVGLSRNSQEFFLLQRI 514

Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           +DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  +
Sbjct: 515 QDEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLIKIKEASVDEIVEV 574

Query: 593 EGISKKIACKIYNHFHKNT 611
            G+ + +A  +    +   
Sbjct: 575 -GVPRAVAEAVQRKLNPQE 592


>gi|148983998|ref|ZP_01817317.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP3-BS71]
 gi|147924145|gb|EDK75257.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP3-BS71]
 gi|301799663|emb|CBW32223.1| UvrABC DNA repair system protein C [Streptococcus pneumoniae
           OXC141]
          Length = 614

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 168/622 (27%), Positives = 291/622 (46%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MV+       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVIFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +      P
Sbjct: 575 GVPRVVAEAVQRKLNPQGEALP 596


>gi|325567477|ref|ZP_08144144.1| excinuclease ABC subunit C [Enterococcus casseliflavus ATCC 12755]
 gi|325158910|gb|EGC71056.1| excinuclease ABC subunit C [Enterococcus casseliflavus ATCC 12755]
          Length = 596

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 180/619 (29%), Positives = 295/619 (47%), Gaps = 43/619 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D   +++YVGKA  L+ R++SY   ++ T +   ++ +IN+  + VT +
Sbjct: 12  LPDQPGCYLMKDKNNKIIYVGKAKILKNRVRSYFTGSHDT-KTERLVQEINDFEYVVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EALLLE N+I++ KP++NI+L+DDKS+P+I +T K + P L   R        YFGP+
Sbjct: 71  NTEALLLEINLIQKNKPKYNIMLKDDKSYPFIKVT-KERYPRLIITRKVLKDGALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A  +T   L R F LR C       + RPCL + + +C  P    +  + Y + V 
Sbjct: 130 PDARAANETKRVLDRLFPLRKCG----PSQKRPCLYYHLGQCVCPYVNNVDPKDYQKIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K F  GG+ ++ + +   M +A    ++E A   RD++ A+  +              
Sbjct: 186 QVKHFFHGGHVDILKDLKEKMGEAIETLEFERAAELRDQIQAIDTVMTRQKMTLTDLMDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 246 DVFGYSVDKGWMCVQVFFIRQGKLIEREVSLFPFYNEADEDFLTFVGQFYQKNEHFIPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + + +  +   L  +   K       +  P++G+K+K+++ A  NA  +  QK      T
Sbjct: 306 VFVPQNVDAAPLEALLETK-------VLQPQRGDKKKLVDLANKNARIALAQKFALIERT 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +        +P    RIE +DNSHIMG   V  MVV  +    K+ YRK+ + 
Sbjct: 359 EERTIGAVDRLGDAMGIPTP-YRIEAFDNSHIMGTDPVSAMVVFVDGKPFKDDYRKYKIR 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               +  DD   M+ V+ RR+S+++K                  +PD++I+DGGK Q+ A
Sbjct: 418 TA--QGGDDYGSMQEVIYRRYSRVLKEN--------------LPFPDLIIIDGGKAQVGA 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           AQ VL    +   I +  + K  K     E  F +  + + L       + +QR++DE H
Sbjct: 462 AQEVLHN-QLGLDIPVAGLVKNNKHKTS-ELIFGEFLDPIQLERNSVEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++S  LDEI G+GP RK+ L+++F ++K I  +S E +    GI K
Sbjct: 520 RFAITFHRQLRSKNSFSSKLDEIPGLGPKRKQQLMKTFKSLKNIQAASVEEIQQA-GIPK 578

Query: 598 KIACKIYNHFHKNTSHTPT 616
            +A  I         + PT
Sbjct: 579 AVAETILAKL--GDQNQPT 595


>gi|226366363|ref|YP_002784146.1| excinuclease ABC subunit C [Rhodococcus opacus B4]
 gi|254764941|sp|C1B4L2|UVRC_RHOOB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226244853|dbj|BAH55201.1| UvrABC system protein C [Rhodococcus opacus B4]
          Length = 743

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 184/690 (26%), Positives = 303/690 (43%), Gaps = 86/690 (12%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY    +    R   M++   ++ +TV 
Sbjct: 13  TIPVDPGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVSTLHPRTRQMVTTAGSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDK++P + +T   + P L+ +R        YFG
Sbjct: 73  STEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEYPRLFVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+ ++
Sbjct: 133 PYSHAWAIRETLDLLLRVFPARTCSAGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAAEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG    L  ++   M QA+ + D+E+A   RD + AL         +  
Sbjct: 193 RKIVEDFCDFLSGRTDKLVRQLEARMQQASEELDFETAARLRDDVGALRRALEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE------------STNAQI 285
                D  +   ++  A +Q      G+ RG   + ++   +            S    +
Sbjct: 253 DGTDADVAAFATDELEAAVQVFHVRGGRVRGQRGWVVEKAGDVIDWAAVDSAAGSDLPLL 312

Query: 286 LSYFLRQFYTDKP--------------CPENILLSEEAEETSLLEISFFKQYGYKVKITV 331
           +  FL QFY ++                P  +L+     +   ++       G  V++ V
Sbjct: 313 VEQFLTQFYGEQAALSGAADQEAGSSGVPREVLVPVLPPDAEQVQEWLSGLRGSAVRLRV 372

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDN 387
           P++G+K+ + E    NA  +  Q          S    L+   +   L   P RIE  D 
Sbjct: 373 PQRGDKKALAETVQRNAMEALQQHKLRRAGDFTSRSAALQGIQEALDLDSAPLRIECVDI 432

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKN- 445
           SH+ G   V  +VV  +    K+ YR + +       + DD A +  V  RRF +  ++ 
Sbjct: 433 SHVQGTDVVASLVVFEDGLPRKSDYRHYAIKEAAGDGRSDDVASIAEVTRRRFLRHNRDV 492

Query: 446 ----------------------------------------EENLNFHPKKQEYSFPSWPD 465
                                                    E        +   F   P+
Sbjct: 493 GVLRAEAAGADGDQASDTDGDQVSDTDGDQVSGGDGGDLAPEAAIDPQTGRPRRFAYPPN 552

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           + ++DGG  Q++AA  VL +L + + + +I +AK  +     E +   + + ++L     
Sbjct: 553 LYVVDGGAPQVAAASAVLDELGITD-VAVIGLAKRLE-----EVWVPGEEDPVILPRTSE 606

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            LY +QR+RDEAHRFAIT HR +R  +   S LD + G+G  R++ L+  FG+V  + ++
Sbjct: 607 SLYLLQRVRDEAHRFAITFHRSKRSRRMTASALDSVRGLGETRRKALVTHFGSVAKLKQA 666

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHT 614
           S E + ++ GI    A  +           
Sbjct: 667 SVEEITAVPGIGTATAKAVLTALGAEEPSA 696


>gi|227552099|ref|ZP_03982148.1| excision endonuclease subunit UvrC [Enterococcus faecium TX1330]
 gi|257895305|ref|ZP_05674958.1| excinuclease ABC [Enterococcus faecium Com12]
 gi|227178765|gb|EEI59737.1| excision endonuclease subunit UvrC [Enterococcus faecium TX1330]
 gi|257831870|gb|EEV58291.1| excinuclease ABC [Enterococcus faecium Com12]
          Length = 592

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   +++T +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+  P++NI+L+DDK++P++ IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F LR C  S  +    PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E K FL+GG+  ++ +I + M +A    ++E A  +RD++ A+  I              
Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ +  ++ S+  +   K       +  PK+GEK+K++E A  NA    +         
Sbjct: 307 VLIPDTIDKPSVEALLDTK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    + +YRK+ + 
Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S++I+                   PD++++DGGKGQ+  
Sbjct: 419 T--VNGPDDYASMREVVYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  +AK  K     E  F      + L    P  + +QR++DE H
Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K
Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPK 579

Query: 598 KIACKIYNHFHKN 610
            +A  +++  H+ 
Sbjct: 580 NVAQNVFDKLHQE 592


>gi|325695872|gb|EGD37763.1| excinuclease ABC subunit C [Streptococcus sanguinis SK160]
          Length = 611

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 170/618 (27%), Positives = 293/618 (47%), Gaps = 41/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D    ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNDTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGLG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNT 611
           G+ + +A  +    ++ T
Sbjct: 575 GVPRAVAEAVREKLNQKT 592


>gi|293378176|ref|ZP_06624345.1| excinuclease ABC, C subunit [Enterococcus faecium PC4.1]
 gi|292643040|gb|EFF61181.1| excinuclease ABC, C subunit [Enterococcus faecium PC4.1]
          Length = 592

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   +++T +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+  P++NI+L+DDK++P++ IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F LR C  S  +    PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E K FL+GG+  ++ +I + M +A    ++E A  +RD++ A+  I              
Sbjct: 187 EVKNFLNGGHEKIESEIHQKMVKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ +  ++ S+  +   K       +  PK+GEK+K++E A  NA    +         
Sbjct: 307 VLIPDTIDKPSVEALLDTK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    + +YRK+ + 
Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S++I+                   PD++++DGGKGQ+  
Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  +AK  K     E  F      + L    P  + +QR++DE H
Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K
Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPK 579

Query: 598 KIACKIYNHFHKN 610
            +A  +++  H+ 
Sbjct: 580 NVAQNVFDKLHQE 592


>gi|331268616|ref|YP_004395108.1| exonuclease ABC subunit C [Clostridium botulinum BKT015925]
 gi|329125166|gb|AEB75111.1| exonuclease ABC, C subunit [Clostridium botulinum BKT015925]
          Length = 622

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 192/623 (30%), Positives = 324/623 (52%), Gaps = 19/623 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKIIPDKPGVYLMRNSLGEVIYVGKAKVLKNRVRQYFQNSKNHSSKVRAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +PR+NILL+DDK +P+I IT     P ++  R  +     
Sbjct: 67  IITDSEMEALILECNLIKKYRPRYNILLKDDKHYPFIKITVNEDFPRIFITRIRAKDGAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    ++ +TI  +++ F +R+C  S+       +PCL + IK C+ PC G IS +
Sbjct: 127 YFGPYPETSSIYETIELIKKVFPIRNCRLSIKSDSESIKPCLNYHIKLCTAPCAGYISKD 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y + + +    L+G ++ +  ++   M +A+ + ++E A   RD++ A+  I+      
Sbjct: 187 EYGKTIKKIIDLLNGKDNEVIYELKEKMKEASEELEFEKAAAIRDKILAVEKIRERQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              ++  D  ++Y ++   C Q  F   G+  G   F L          I+S F++ FY 
Sbjct: 247 TSNFDNEDFINIYSDEFDWCAQIFFARDGKIIGREHFILDKGIFEEKKDIISNFIKDFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +   +  +  LLE     + G KV I +P +GEK+K+++    NA     + 
Sbjct: 307 GTAFIPKNIYVPDIMDVELLENWLSVKKGSKVSIKIPLKGEKKKLLDLVESNAKNTLEQF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +    +  +  ILK+      L  IP RIE YD S+I G  +VG M+V  +     + 
Sbjct: 367 KLKIKVDKELYSNILKELQSLLGLEDIPNRIEAYDISNIQGVDSVGTMIVFEDGKPKNSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F +    VK  +D   M+ +L RRF   ++  +E    + K     F  +PD++++D
Sbjct: 427 YRRFKIKT--VKGANDYDSMKEILIRRFKHGLEEIKEIQKRNLKLSGAKFSVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VLK LN+   I +  + K  K         V     + +   + I+  I
Sbjct: 485 GGKGQVNIALEVLKNLNIT--IPVCGMVKDDKHKTRG---LVYNNREINIKSNNKIMQLI 539

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAIT HR  R K+  +S L++I  IG  R++ LLQ FG++  I ++S + L
Sbjct: 540 TRIQDEVHRFAITYHRSLRNKRVLHSILEDIPNIGIKRRKELLQKFGSIDNIKKASYDKL 599

Query: 590 ASIEGISKKIACKIYNHFHKNTS 612
            S + I++K A  I ++F K+  
Sbjct: 600 LSTDSINEKAAKSIIDYFRKHND 622


>gi|15902587|ref|NP_358137.1| excinuclease ABC subunit C [Streptococcus pneumoniae R6]
 gi|116515431|ref|YP_816039.1| excinuclease ABC subunit C [Streptococcus pneumoniae D39]
 gi|168482850|ref|ZP_02707802.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC1873-00]
 gi|32130298|sp|Q8DQQ9|UVRC_STRR6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|122279075|sp|Q04LQ9|UVRC_STRP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|15458119|gb|AAK99347.1| Exonuclease ABC - subunit C [Streptococcus pneumoniae R6]
 gi|116076007|gb|ABJ53727.1| excinuclease ABC, C subunit [Streptococcus pneumoniae D39]
 gi|172043714|gb|EDT51760.1| excinuclease ABC, C subunit [Streptococcus pneumoniae CDC1873-00]
 gi|332203775|gb|EGJ17842.1| excinuclease ABC, C subunit [Streptococcus pneumoniae GA47368]
          Length = 614

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 167/616 (27%), Positives = 288/616 (46%), Gaps = 41/616 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R        Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGSLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L+      + +QR++
Sbjct: 458 QVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I+G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIDGLGPKRKQNLMRHFKSLTKIKEASVDEIVEV- 574

Query: 594 GISKKIACKIYNHFHK 609
           G+ + +A  +    + 
Sbjct: 575 GVPRVVAEAVQRKLNP 590


>gi|257870453|ref|ZP_05650106.1| excinuclease ABC subunit C [Enterococcus gallinarum EG2]
 gi|257804617|gb|EEV33439.1| excinuclease ABC subunit C [Enterococcus gallinarum EG2]
          Length = 596

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 176/610 (28%), Positives = 294/610 (48%), Gaps = 41/610 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHDT-KTERLVQEIADFEYVVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EALLLE N+I++ KP++NI+L+DDKS+P+I +T+  + P L   R        YFGP+
Sbjct: 71  NTEALLLEINLIQKNKPKYNIMLKDDKSYPFIKVTN-ERYPKLIITRKVLKDGALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A  +T   L R F LR C       + RPCL + + +C  P    +  ++Y + V 
Sbjct: 130 PDARAANETKRILDRLFPLRKCG----ASQKRPCLYYHLGQCVCPYVHHMDPKEYRKIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K F  GG+  +++++   M +A    ++E A   RD++ A+  +              
Sbjct: 186 QVKHFFHGGHVEIQKELKEKMGEAIESLEFERAAELRDQIQAIDTVMTRQKMTLTDLLDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 246 DVFGYSVDKGWMCVQVFFIRQGKLIEREVSLFPFYNEAEEDFLTFIGQFYQKNEHFIPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           I + +  E   L  +   K       +  P++G+K+K+++ A  NA  +  QK      T
Sbjct: 306 IFVPQTIEREPLEVLLKTK-------VLQPQRGDKKKLVDLANKNAQIALDQKFALIERT 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +     RIE +DNSHIMG   V  MVV  +    K+ YRK+ + 
Sbjct: 359 EERTIGAVEKLGEAMGISAP-YRIEAFDNSHIMGTDPVSAMVVFVDGKPSKDDYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               +  DD   M+ V+ RR+S+++K +                +PD++++DGGKGQ+ A
Sbjct: 418 TA--QGGDDYGSMQEVIYRRYSRVLKEK--------------LPFPDLIVIDGGKGQVGA 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           AQ VL    +   I +  + K  K     E  F    + + L       + +QR++DE H
Sbjct: 462 AQDVLHN-QLGLDIPVAGLVKNNKHKTS-ELLFGDDLQPIQLERNSVEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++S  LDEI G+GP RK+ L+++F ++K I  +S   +    GI +
Sbjct: 520 RFAITFHRQLRSKNSFSSRLDEIPGLGPKRKQQLMKTFKSLKNIQAASVAEIQQA-GIPQ 578

Query: 598 KIACKIYNHF 607
            +A  I    
Sbjct: 579 AVAETILEKL 588


>gi|241763695|ref|ZP_04761744.1| excinuclease ABC, C subunit [Acidovorax delafieldii 2AN]
 gi|241367084|gb|EER61458.1| excinuclease ABC, C subunit [Acidovorax delafieldii 2AN]
          Length = 666

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 207/656 (31%), Positives = 317/656 (48%), Gaps = 58/656 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D    +LYVGKA NL++R+ SY   N+   RI HM+S+I  +  TV  +
Sbjct: 16  LPALPGVYRYFDAQDALLYVGKALNLKRRVSSYFQKNHGGTRIGHMVSKIVRMETTVVRS 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD----------KHKIPALYKHRDSS 115
           E EALLLE N+IK L P+FNIL RDDKS+PY+ IT               P +  +R + 
Sbjct: 76  EAEALLLENNLIKTLNPKFNILFRDDKSYPYLKITGTAGPDRGDAPGQVFPRMAYYRGAV 135

Query: 116 TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
             +  YFGP+ S  AV+++I  LQ+ F LR+C D+VF +RTRPCLL+QIKRC+ PC G I
Sbjct: 136 DKKHRYFGPYPSGWAVKESIQLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCTAPCVGLI 195

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y   V +A+  L G    L + +   M   + + ++E A   R+++ ALS + +  
Sbjct: 196 SPEAYAADVSQAQALLRGETQELLKAMETRMMAHSDRLEFEQAAEVRNQIQALSRVLHQQ 255

Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST----------- 281
                    +D  ++      AC+       G++ G   +F     ++            
Sbjct: 256 SIETADDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPVHVEDAAGVFAEEGSDAA 315

Query: 282 ----------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331
                        +L  F+ Q Y   P P  ++ SE  ++  L  +   +Q G +V    
Sbjct: 316 GTVAAPVRPVEVLVLEAFIAQHYLGVPVPPVLVTSEPVDKALLGAL--TEQSGVRVSAIH 373

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH---IPKRIEIYDNS 388
             + ++R  ++ A  NA     + L+ E S Q   +   +   LP        IE +D S
Sbjct: 374 QPREQRRAWLDMAQKNADLQLARLLAEEGSQQARTRALAEALDLPPDDLDQLTIECFDIS 433

Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE- 447
           H  G S     VV   +    ++YR++      +   DD A MR VL RR+S++ +    
Sbjct: 434 HTAGESTQASCVVFHHHKMQSSEYRRY--KIEGITGGDDYAAMRQVLTRRYSKVAEAARE 491

Query: 448 ------------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495
                       N       +       PD+V++DGGKGQ+S A+ V   L ++    I+
Sbjct: 492 AGGIDFAAAPPANGEGDGAIKPKGVARLPDLVLIDGGKGQVSVAREVFTALGLDLT-RIV 550

Query: 496 SIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554
            + KG  R  G+E+     G   + L      L  + ++RDEAHRFAIT  R  R K   
Sbjct: 551 GVEKGEGRKVGLEELVFADGREKVYLGKDSAALMLVAQIRDEAHRFAITGMRAARSKVRV 610

Query: 555 --SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
               L+EI G+GP ++  LLQ FG V+ ++ +S E L +++GIS+++A  IY    
Sbjct: 611 GGGQLEEIPGVGPKKRARLLQRFGGVRGVAAASVEDLLTVDGISRELAEDIYRALR 666


>gi|312139598|ref|YP_004006934.1| excinuclease ABC subunit c uvrc [Rhodococcus equi 103S]
 gi|325676727|ref|ZP_08156401.1| excinuclease ABC subunit C [Rhodococcus equi ATCC 33707]
 gi|311888937|emb|CBH48250.1| excinuclease ABC subunit C UvrC [Rhodococcus equi 103S]
 gi|325552509|gb|EGD22197.1| excinuclease ABC subunit C [Rhodococcus equi ATCC 33707]
          Length = 694

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 184/660 (27%), Positives = 295/660 (44%), Gaps = 61/660 (9%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEV 67
            PGVY+  D  GRV+YVGKA +L+ R+ SY    ++   R   M++   ++ +TV  TEV
Sbjct: 2   APGVYKFRDPHGRVIYVGKAKSLRSRLNSYFADVSSLHPRTRQMVTTAGSVEWTVVSTEV 61

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EAL LE N IK   PRFN+  RDDK++P + +T   + P L+ +R        YFGP++ 
Sbjct: 62  EALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEYPRLFVYRGPRRKGVRYFGPYSH 121

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
             A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G +S+ ++ E V
Sbjct: 122 AWAIRETLDLLLRVFPARTCSAGVFKRHNQIGRPCLLGYIDKCSAPCVGRVSAAEHREIV 181

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR--- 241
            +   FLSG    L  ++   M +A    D+E+A   RD + AL         +      
Sbjct: 182 EDFCDFLSGRTDRLVRQLETRMQEAAEDLDFETAARLRDDVGALKKALEKQAVVLGDGTD 241

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL--------------S 287
            D  +   ++    +Q      G+ RG   + ++   +      +               
Sbjct: 242 ADLVAFASDELEVAVQVFHVRGGRVRGQRGWVVEKAGDVIERDAVAADAGAESELALLVE 301

Query: 288 YFLRQFYTD---------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
            FL QFY +                  P  +L+     +   L+       G  VK+ VP
Sbjct: 302 QFLTQFYGEQAALSDSGAAADQPTNAVPREVLVPALPRDVEGLQQWLGGLRGSSVKLRVP 361

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNS 388
           ++G+K+ + E    NA  +  Q          S    L+   +   L   P RIE  D S
Sbjct: 362 QRGDKKALAETVERNAKEALAQHKLRRAGDFTSRSAALQGIQEALDLDSAPLRIECVDIS 421

Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQ------ 441
           H+ G   V  +VV  +    K+ YR + +       + DD A +  V  RRF +      
Sbjct: 422 HVQGTDVVASLVVFEDGLPRKSDYRHYAIREAAGDGRSDDVASIAEVTRRRFLRHNRDVA 481

Query: 442 -------LIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITI 494
                    +  E        +   F   P++ ++DGG  Q++AA  VL +L V + + +
Sbjct: 482 AGGGADGGDQAPEAALDPQTGRPRRFAYPPNLFVVDGGSPQVNAAAEVLDELGVTD-VAV 540

Query: 495 ISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAA 553
           I +AK  +     E +   + + ++L      LY +QR+RDEAHRFAIT HR +R  +  
Sbjct: 541 IGLAKRLE-----EVWVPGEEDPVILPRTSESLYLLQRIRDEAHRFAITFHRSKRSRRMT 595

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            S LD + G+G  R+  L+  FG+V  +  ++ E + ++ GI    A  +     +  S 
Sbjct: 596 ASALDSVRGLGETRRTALVTHFGSVAKLREATVEEITAVPGIGVATAQAVLAALAEPQSD 655


>gi|257866430|ref|ZP_05646083.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC30]
 gi|257873054|ref|ZP_05652707.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC10]
 gi|257800388|gb|EEV29416.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC30]
 gi|257807218|gb|EEV36040.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC10]
          Length = 596

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 180/620 (29%), Positives = 298/620 (48%), Gaps = 45/620 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D   +++YVGKA  L+ R++SY   ++ T +   ++ +IN+  + VT +
Sbjct: 12  LPDQPGCYLMKDKNNKIIYVGKAKILKNRVRSYFTGSHDT-KTERLVQEINDFEYVVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EALLLE N+I++ KP++NI+L+DDKS+P+I +T K + P L   R        YFGP+
Sbjct: 71  NTEALLLEINLIQKNKPKYNIMLKDDKSYPFIKVT-KERYPRLIITRKVLKDGALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A  +T   L R F LR C       + RPCL + + +C  P    +  + Y + V 
Sbjct: 130 PDARAANETKRVLDRLFPLRKCG----PSQKRPCLYYHLGQCVCPYVNNVDPKDYQKIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K F  GG+ ++ + +   M +A    ++E A   RD++ A+  +              
Sbjct: 186 QVKHFFHGGHVDILKDLKEKMGEAIETLEFERAAELRDQIQAIDTVMTRQKMTLTDLMDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 246 DVFGYSVDKGWMCVQVFFIRQGKLIEREVSLFPFYNEADEDFLTFVGQFYQKNEHFIPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + + +  +   L  +   K       +  P++G+K+K+++ A  NA  +  QK      T
Sbjct: 306 VFVPQNVDAAPLEALLETK-------VLQPQRGDKKKLVDLANKNARIALAQKFALIERT 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    +   +     RIE +DNSHIMG   V  MVV  +    K+ YRK+ + 
Sbjct: 359 EERTIGAVDRLGEAMGIATP-YRIEAFDNSHIMGTDPVSAMVVFVDGKPFKDDYRKYKIR 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               +  DD   M+ V+ RR+S+++K                  +PD++I+DGGK Q+ A
Sbjct: 418 TA--QGGDDYGSMQEVIYRRYSRVLKEN--------------LPFPDLIIIDGGKAQVGA 461

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AQ VL  +L ++  I +  + K  K     E  F +  + + L       + +QR++DE 
Sbjct: 462 AQEVLYNQLGLD--IPVAGLVKNNKHKTS-ELIFGEFLDPIQLERNSVEFFLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K ++S  LDEI G+GP RK+ L+++F ++K I  +S E +    GI 
Sbjct: 519 HRFAITFHRQLRSKNSFSSKLDEIPGLGPKRKQQLMKTFKSLKNIQAASVEEIQQA-GIP 577

Query: 597 KKIACKIYNHFHKNTSHTPT 616
           K +A  I         + PT
Sbjct: 578 KAVAETILAKL--GDQNQPT 595


>gi|293570973|ref|ZP_06682017.1| excinuclease ABC, C subunit [Enterococcus faecium E980]
 gi|291608957|gb|EFF38235.1| excinuclease ABC, C subunit [Enterococcus faecium E980]
          Length = 592

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 187/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   +++T +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+  P++NI+L+DDK++P++ IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F LR C  S  +    PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E K FL+GG+  ++ +I + M +A    ++E A  +RD++ A+  I              
Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ +  ++ S+  +   K       +  PK+GEK+K++E A  NA    +         
Sbjct: 307 VLIPDTIDKPSVEALLDTK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    K +YRK+ + 
Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPAKKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S++I+                   PD++++DGGKGQ+  
Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  +AK  K     E  F      + L    P  + +QR++DE H
Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K
Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPK 579

Query: 598 KIACKIYNHFHKN 610
            +A  +++  H+ 
Sbjct: 580 NVAQNVFDKLHQE 592


>gi|67923431|ref|ZP_00516909.1| Excinuclease ABC, C subunit [Crocosphaera watsonii WH 8501]
 gi|67854717|gb|EAM49998.1| Excinuclease ABC, C subunit [Crocosphaera watsonii WH 8501]
          Length = 611

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 206/621 (33%), Positives = 312/621 (50%), Gaps = 26/621 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             + +P  PGVY M D  G +LY+GK+  L+ R++SY     NH+ RIT M+ Q+ NI F
Sbjct: 5   QIKPLPNEPGVYLMRDHQGDILYIGKSKRLRSRVRSYFQPCQNHSPRITLMVQQVANIEF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQ 118
            VT TE EAL LEAN+IKR +P FN+LL+DDK +PY+ IT     P ++  R       +
Sbjct: 65  IVTDTEAEALALEANLIKRHQPYFNVLLKDDKKYPYVCITWSENYPRIFITRKRRLNHQR 124

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             Y+GP+     + +T+  ++R F LR     +F  + RPCL + I RC G C G IS+E
Sbjct: 125 DRYYGPYVDTHLLRQTLRLVKRVFPLRQRPQPLF--KDRPCLNYDIGRCPGVCQGLISTE 182

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V +      G    L +K++  M  A  + ++E A   RD++ A+  +       
Sbjct: 183 DYHKIVEKIAMIFQGRTEELLQKLSAQMELAASQLNFEKAAQVRDQIKAIQGLGIDQKVT 242

Query: 239 YNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                   D  +L  +    CIQ      G+  G   FF  T S +    +       + 
Sbjct: 243 LPDDTISRDAIALAADNTYTCIQLFQIRAGRLVGRLGFFADTVSGTPEGILQRVLEEHYL 302

Query: 295 TDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
              P   P  IL+     ET +L      Q G KV I VP++ +K ++I     NA    
Sbjct: 303 QVNPVEIPSEILVQYPLPETDILADWLGSQKGKKVNIIVPQKKQKAELIRLVERNAGYEL 362

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +       + + L+D  K   L  IP RIE YD SHI G +AV   VV  +    K  Y
Sbjct: 363 EKTKRHAQQNLLALEDLAKLLDLQTIPHRIEGYDISHIQGSNAVASQVVFIDGVPAKQSY 422

Query: 413 RKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           R + +   D+     DD A +  VL RRF       E        +      +P+++++D
Sbjct: 423 RHYKIKNPDITIGHSDDFASLAEVLGRRFRSYKNKSE-------TELLGLDDYPNLIMID 475

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLS+   +L+ +N+   + +IS+AK  +     E F   + + L  +   P +  +
Sbjct: 476 GGKGQLSSVINILETMNLFPGLKVISLAKKRE-----EIFLPGESKPLATHPEQPGVQLL 530

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           +R+RDEAHRFA+T HR++R KK+ +S LD+I G+G  R++ LL  F ++  I  +S E L
Sbjct: 531 RRVRDEAHRFAVTFHRQQRLKKSRHSRLDDIPGLGFNRQKQLLAHFHSIDYIREASLEKL 590

Query: 590 ASIEGISKKIACKIYNHFHKN 610
             + GI + +A +IYN+FH N
Sbjct: 591 QEVSGIGQALATEIYNYFHPN 611


>gi|182418177|ref|ZP_02949477.1| excinuclease ABC, C subunit [Clostridium butyricum 5521]
 gi|237666265|ref|ZP_04526252.1| excinuclease ABC, C subunit [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377995|gb|EDT75535.1| excinuclease ABC, C subunit [Clostridium butyricum 5521]
 gi|237658355|gb|EEP55908.1| excinuclease ABC, C subunit [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 626

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 199/626 (31%), Positives = 331/626 (52%), Gaps = 21/626 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G ++YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 7   QLKILPDKPGVYLMKNSLGEIIYVGKAKVLKNRVRQYFQNSKNHSEKVKAMVKNIAEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+  P++NI L+DDK +P+I IT     P ++  R+ +     
Sbjct: 67  IVTDSEMEALILECNLIKKHSPKYNISLKDDKFYPFIKITTNEDFPRVFITRNFAKDGNR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV +TI  +++ F LR+C   +F +   TRPCL + IK+C+ PC G IS +
Sbjct: 127 YFGPYPNAGAVHETIKLIRKIFPLRTCKKLIFENGKHTRPCLNYHIKKCNAPCEGHISKD 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   + E    LSG + +L  K+  +M +A++  ++E A   RD++ A+  I       
Sbjct: 187 EYKRMIDEIIDVLSGRDKSLINKLKNDMQEASMNLEFEKAASFRDKILAIESIAEKQKVF 246

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               N  D  ++Y ++    +Q  F   G+  G   F L+  +   ++ I+S F+  FY 
Sbjct: 247 KSQDNDEDFINIYKDEKDCAVQVFFLRDGKVTGRENFILENSAYEDDSVIISQFIVSFYG 306

Query: 296 DKPCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH---- 349
             P     +    +  ++   LE     + G KV + VP +GEK++++E    NA     
Sbjct: 307 GTPKVPKNIYIPLSNDDDNDALEEFLTIKRGSKVFVKVPIKGEKKEMLELVKSNAKVTLD 366

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +   + L  +  +++ L++  +   L  +P RIE YD S+I G  +VG M+V  +     
Sbjct: 367 QFKDKILRDKEINRLCLEEIQELLELDSMPIRIEAYDISNIQGVDSVGSMIVFEDGKAKN 426

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVI 468
           + YR+F +    VK  +D   MR +LERRFS  +K  +E      K     F ++PD+++
Sbjct: 427 SDYRRFRIKT--VKNANDYDSMREILERRFSHGLKEIKEIQERQLKFSSGKFSNFPDLIM 484

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQ++ A  VL+KL +   I +  + K    +       +   + L++N    ++ 
Sbjct: 485 MDGGKGQVNVALEVLQKLGI--NIPVCGLVKDDHHATRG---IIYNNKELIINRSSNLMQ 539

Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            I+R++DE HRFAIT HR  R KK  +S LD+I  IG  R+  LL  FG++  I +++ E
Sbjct: 540 MIRRVQDEVHRFAITYHRSLRDKKTLHSILDDIPNIGQKRRMALLMKFGSIDNIKKATVE 599

Query: 588 TLASIEGISKKIACKIYNHFHKNTSH 613
            L   E I  K A  I  +F  +  +
Sbjct: 600 ELLETESIDNKAATSIMAYFKNHEQN 625


>gi|293568796|ref|ZP_06680110.1| excinuclease ABC, C subunit [Enterococcus faecium E1071]
 gi|294617529|ref|ZP_06697159.1| excinuclease ABC, C subunit [Enterococcus faecium E1679]
 gi|291588513|gb|EFF20347.1| excinuclease ABC, C subunit [Enterococcus faecium E1071]
 gi|291596135|gb|EFF27398.1| excinuclease ABC, C subunit [Enterococcus faecium E1679]
          Length = 592

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   +++T +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+  P++NI+L+DDK++P++ IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F LR C  S  +    PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E K FL+GG+  ++ +I + M +A    ++E A  +RD++ A+  I              
Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYLGQFYQENEHFIPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ +  ++ S+  +   K       +  PK+GEK+K++E A  NA    +         
Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELASKNASVALNERFDLIARK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    + +YRK+ + 
Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S++I+                   PD++++DGGKGQ+  
Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  +AK  K     E  F      + L    P  + +QR++DE H
Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRIQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K
Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579

Query: 598 KIACKIYNHFHKN 610
            +A  +++  H+ 
Sbjct: 580 NVAQNVFDKLHQE 592


>gi|257883967|ref|ZP_05663620.1| excinuclease ABC [Enterococcus faecium 1,231,501]
 gi|257819805|gb|EEV46953.1| excinuclease ABC [Enterococcus faecium 1,231,501]
          Length = 592

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   +++T +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+  P++NI+L+DDK++P++ IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F LR C  S  +    PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E K FL+GG+  ++ +I + M +A    ++E A  +RD++ A+  I              
Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ +  ++ S+  +   K       +  PK+GEK+K++E A  NA    +         
Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    + +YRK+ + 
Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S++I+                   PD++++DGGKGQ+  
Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  +AK  K     E  F      + L    P  + +QR++DE H
Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVIPLERNSPEFFLLQRIQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K
Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579

Query: 598 KIACKIYNHFHKN 610
            +A  +++  H+ 
Sbjct: 580 NVAQNVFDKLHQE 592


>gi|226311267|ref|YP_002771161.1| excinuclease ABC subunit C [Brevibacillus brevis NBRC 100599]
 gi|254764926|sp|C0Z9I7|UVRC_BREBN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226094215|dbj|BAH42657.1| excinuclease ABC subunit C [Brevibacillus brevis NBRC 100599]
          Length = 593

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 181/613 (29%), Positives = 292/613 (47%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M + +G ++YVGKA  L+ R++SY   + H  +   ++S+I +  + V  +
Sbjct: 12  LPDKPGCYLMKNASGEIIYVGKAKVLKNRVRSYFTGS-HNGKTQLLVSEIVDFEYIVVSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK   PR+N++LRDDK++PYI IT+    P L   R     +  YFGP+
Sbjct: 71  AIEALILECNLIKEHDPRYNVMLRDDKTYPYIKITN-EAQPRLEITRKVLKDKAKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +     +    L R + LR C +       + CL + + +C  PC  E+S+E+    V 
Sbjct: 130 PNAGDASEVKKLLDRLYPLRKCRNMP----KQVCLYYHLGQCLAPCVYEVSAEENQRLVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           +  +FL GG+  +K+ +   M QA    ++E A  +RD++ ++  +       +      
Sbjct: 186 QISQFLDGGHEEMKQTLTEKMLQAAENMEFERAKEYRDQIKSIEAVMEKQKITFTDTIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D       K   CIQ  +   G+     T         T   +       +      P+ 
Sbjct: 246 DIIGFAVEKGWMCIQVFYMRKGKMIERQTTSFPYYGSETEDFMSYVSQFYYDKQNALPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           ILL +E+E   L E    K +        PK+G+K ++++ A  NA  +           
Sbjct: 306 ILLPQESEPELLAEWLGIKVHA-------PKRGKKHELVKMATENARIALQEKFALMSKD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      + +      +P    RIE +DNS+I G   V  M+V  +    K +YRKF + 
Sbjct: 359 DARTVQAVHNLGHILGIPVP-HRIEAFDNSNIQGTEPVSAMIVFTDGRPDKKEYRKFKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+S+L+K  +                PD++++DGGKGQ+SA
Sbjct: 418 T--VEGPDDYGSMREVVRRRYSRLLKENQ--------------PMPDLIVIDGGKGQISA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  +AK  K        +    E + L       Y +QR++DE 
Sbjct: 462 AMDVLENELGLY--IPVCGLAKDEKHRTAQ-LMYGDPPEPVNLRRDSYEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRF IT HR+ R K    S LDEI GIG  R++LL   FG++K +  ++ E    + GI 
Sbjct: 519 HRFVITFHRQSRTKTMLSSQLDEIPGIGEKRRKLLFSHFGSLKKMREATVEDFRQL-GIG 577

Query: 597 KKIACKIYNHFHK 609
            K+A +I  H  K
Sbjct: 578 DKLAKEIIGHLRK 590


>gi|257876043|ref|ZP_05655696.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC20]
 gi|257810209|gb|EEV39029.1| excinuclease ABC subunit C [Enterococcus casseliflavus EC20]
          Length = 596

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 179/619 (28%), Positives = 295/619 (47%), Gaps = 43/619 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D   +++YVGKA  L+ R++SY   ++ T +   ++ +IN+  + VT +
Sbjct: 12  LPDQPGCYLMKDKNNKIIYVGKAKILKNRVRSYFTGSHDT-KTERLVQEINDFEYVVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EALLLE N+I++ KP++NI+L+DDKS+P+I +T K + P L   R        YFGP+
Sbjct: 71  NTEALLLEINLIQKNKPKYNIMLKDDKSYPFIKVT-KERYPRLIITRKVLKDGALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A  +T   L R F LR C       + RPCL + + +C  P    +  + Y + V 
Sbjct: 130 PDARAANETKRVLDRLFPLRKCG----PSQKRPCLYYHLGQCVCPYVNNVDPKDYQKIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K F  GG+ ++ + +   M +A    ++E A   RD++ A+  +              
Sbjct: 186 QVKHFFHGGHVDILKDLKEKMGEAIETLEFERAAELRDQIQAIDTVMTRQKMTLTDLMDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 246 DVFGYSVDKGWMCVQVFFIRQGKLIEREVSLFPFYNEADEDFLTFVGQFYQKNEHFIPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + + +  +   L  +   K       +  P++G+K+K+++ A  NA  +  QK      T
Sbjct: 306 VFVPQNVDAAPLEALLETK-------VLQPQRGDKKKLVDLANKNARIALAQKFALIERT 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    +   +     RIE +DNSHIMG   V  MVV  +    K+ YRK+ + 
Sbjct: 359 EERTIGAVDRLGEAMGIATP-YRIEAFDNSHIMGTDPVSAMVVFVDGKPFKDDYRKYKIR 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               +  DD   M+ V+ RR+S+++K                  +PD++I+DGGK Q+ A
Sbjct: 418 TA--QGGDDYGSMQEVIYRRYSRVLKEN--------------LPFPDLIIIDGGKAQVGA 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           AQ VL    +   I +  + K  K     E  F +  + + L       + +QR++DE H
Sbjct: 462 AQEVLHN-QLGLDIPVAGLVKNNKHKTS-ELIFGEFLDPIQLERNSVEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++S  LDEI G+GP RK+ L+++F ++K I  +S E +    GI K
Sbjct: 520 RFAITFHRQLRSKNSFSSKLDEIPGLGPKRKQQLMKTFKSLKNIQAASVEEIQQA-GIPK 578

Query: 598 KIACKIYNHFHKNTSHTPT 616
            +A  I         + PT
Sbjct: 579 AVAETILAKL--GDQNQPT 595


>gi|294614395|ref|ZP_06694311.1| excinuclease ABC, C subunit [Enterococcus faecium E1636]
 gi|291592703|gb|EFF24296.1| excinuclease ABC, C subunit [Enterococcus faecium E1636]
          Length = 592

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   +++T +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+  P++NI+L+DDK++P++ IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F LR C  S  +    PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E K FL+GG+  ++ +I + M +A    ++E A  +RD++ A+  I              
Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ +  ++ S+  +   K       +  PK+GEK+K++E A  NA    +         
Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    + +YRK+ + 
Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S++I+                   PD++++DGGKGQ+  
Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  +AK  K     E  F      + L    P  + +QR++DE H
Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRIQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K
Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579

Query: 598 KIACKIYNHFHKN 610
            +A  +++  H+ 
Sbjct: 580 NVAQNVFDKLHQE 592


>gi|290967950|ref|ZP_06559500.1| excinuclease ABC, C subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290782089|gb|EFD94667.1| excinuclease ABC, C subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 612

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 193/621 (31%), Positives = 302/621 (48%), Gaps = 37/621 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
              Q+P  PGVY   +  GR++YVGKA  L+ R++SY+      + ++  M+ Q  ++  
Sbjct: 9   KIRQLPLQPGVYLWKNEQGRIIYVGKAVALRNRVRSYLRQDARRSPKVAAMMRQAADVET 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V   E+EALLLE  +IK+  PR+NI+LRDDK++PYI +T +     ++  R        
Sbjct: 69  MVVANEMEALLLENTLIKKHHPRYNIMLRDDKTYPYIKVTVQEPYARVFMTRRMIRDGAR 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPFA   AV + I  LQRTF LRSC       + RPCL + ++ C  PC  +I+   Y
Sbjct: 129 YFGPFADAQAVHRIITLLQRTFQLRSCRTM---RQDRPCLQYHLQHCPAPCAQKITQADY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            + V +A   L G + +L   +   MN+A  + ++E A  +RD++ A++ IQ        
Sbjct: 186 AQAVRQALAILEGRDKHLVVTLTAKMNRAAARMEFEKAAAYRDQIQAVTVIQGQQHVTQV 245

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
               MD  +L       C+Q      G+  G  TF L+  +E   +++    L Q+Y   
Sbjct: 246 GGGDMDVVALVSEAGQTCVQVYIVRQGRLLGRETFSLENGAEERESRLTEVVLDQYYAAA 305

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHT 353
                 ++             + K+ G  V+IT+P +G K+K++  A  N      +   
Sbjct: 306 GEIPAEIVVAALAHPRAYAERWRKRCGRSVRITIPLRGMKKKLLTMAEENGRLLLAQRRL 365

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           Q           ++   + F LP +P R+E +D SH  G   V  MVV       K +YR
Sbjct: 366 QWQHDRDKTMGAVEALAQIFDLPRLPLRMECFDISHTQGLETVASMVVFENGRPAKREYR 425

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           +F L        DD   M  ++ RR+                        PD++++DGG 
Sbjct: 426 RFKLQTVQG-KPDDFKSMAEIMRRRY-----------------GEKDWPVPDLIVIDGGL 467

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQL AA  V+++   E    +IS+AK  +     E F       ++L+   P L  +Q +
Sbjct: 468 GQLHAALPVIRQAGCEA--PVISLAKRLE-----EVFTEHTTHPVILSHHTPELQLLQAI 520

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAIT HR  R K+A  S LD I GIGP R+R L Q+F  ++ + ++  ETLA++
Sbjct: 521 RDESHRFAITYHRTLRGKRALVSILDHIEGIGPKRRRALWQAFKNLEEMKQADVETLAAV 580

Query: 593 EGISKKIACKIYNHFHKNTSH 613
            G+++++A  +Y  F   T  
Sbjct: 581 PGMNRQVAENVYQFFRLGTDE 601


>gi|257897921|ref|ZP_05677574.1| excinuclease ABC [Enterococcus faecium Com15]
 gi|257835833|gb|EEV60907.1| excinuclease ABC [Enterococcus faecium Com15]
          Length = 592

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   +++T +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+  P++NI+L+DDK++P++ IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F LR C  S  +    PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E K FL+GG+  ++ +I + M +A    ++E A  +RD++ A+  I              
Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ +  ++ S+  +   K       +  PK+GEK+K++E A  NA    +         
Sbjct: 307 VLIPDTIDKPSVEALLDTK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    + +YRK+ + 
Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S++I+                   PD++++DGGKGQ+  
Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  +AK  K     E  F      + L    P  + +QR++DE H
Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHRT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K
Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPK 579

Query: 598 KIACKIYNHFHKN 610
            +A  +++  H+ 
Sbjct: 580 NVAQNVFDKLHQE 592


>gi|325694643|gb|EGD36551.1| excinuclease ABC subunit C [Streptococcus sanguinis SK150]
          Length = 609

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 171/615 (27%), Positives = 293/615 (47%), Gaps = 41/615 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGAIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHSICQVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 ELTQEVAAFLKGQDDQIIEDLRGKMAVAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRVLVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNVAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFH 608
           G+ + +A  +    +
Sbjct: 575 GVPRAVAEAVREKLN 589


>gi|261208741|ref|ZP_05923178.1| excinuclease ABC [Enterococcus faecium TC 6]
 gi|289565575|ref|ZP_06446022.1| excinuclease ABC, C subunit [Enterococcus faecium D344SRF]
 gi|293553118|ref|ZP_06673756.1| excinuclease ABC, C subunit [Enterococcus faecium E1039]
 gi|260077243|gb|EEW64963.1| excinuclease ABC [Enterococcus faecium TC 6]
 gi|289162657|gb|EFD10510.1| excinuclease ABC, C subunit [Enterococcus faecium D344SRF]
 gi|291602709|gb|EFF32923.1| excinuclease ABC, C subunit [Enterococcus faecium E1039]
          Length = 592

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   +++T +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+  P++NI+L+DDK++P++ IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F LR C  S  +    PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYAKIVD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E K FL+GG+  ++ +I + M +A    ++E A  +RD++ A+  I              
Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYLGQFYQENEHFIPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ +  ++ S+  +   K       +  PK+GEK+K++E A  NA    +         
Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    + +YRK+ + 
Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S++I+                   PD++++DGGKGQ+  
Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  +AK  K     E  F      + L    P  + +QR++DE H
Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRIQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K
Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579

Query: 598 KIACKIYNHFHKN 610
            +A  +++  H+ 
Sbjct: 580 NVAQNVFDKLHQE 592


>gi|126657460|ref|ZP_01728616.1| excinuclease ABC subunit C [Cyanothece sp. CCY0110]
 gi|126621164|gb|EAZ91877.1| excinuclease ABC subunit C [Cyanothece sp. CCY0110]
          Length = 610

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 201/622 (32%), Positives = 308/622 (49%), Gaps = 28/622 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
               +P  PGVY M D  G +LY+GK+  L+ R++SY   + +H+ RI  M+ Q+ N+ F
Sbjct: 4   QIRTVPNEPGVYFMRDAQGDILYIGKSKQLRSRVRSYFQPSQDHSPRIALMVQQVANVEF 63

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQ 118
            VT TE EAL LEAN+IK+ +P FN+LL+DDK +PYI IT     P ++  R        
Sbjct: 64  IVTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYICITWSEAYPRIFITRKRRLNHKS 123

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             Y+GP+     + +T+  ++R F LR     +F  + RPCL + I RC G C G IS E
Sbjct: 124 DRYYGPYVDTHLLRQTLRLVKRVFPLRQRPRPLF--KDRPCLNYDIGRCPGVCQGLISPE 181

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y   V +      G    L +K++  M  A  +  +E A   RD++ A+  +       
Sbjct: 182 DYHIIVEKVAMIFQGRTEELLQKLSAQMELAASQLKFEQAGQIRDQIKAIKGLGIDQKVT 241

Query: 239 YNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                   D  +L  ++   CIQ      G+  G   FF  T S  T   IL   L + Y
Sbjct: 242 LPDDTISRDAIALAADETYTCIQLFQIRAGRLVGRLGFFADTVSG-TPESILQRVLEEHY 300

Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                   P  IL+     ET +L      + G KV I VP++ +K ++I     NA   
Sbjct: 301 LQVDSVEVPSEILVQYPLPETDILRDWLGNKKGKKVNIIVPQKQQKAELIRLVERNAGYE 360

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                     + + L+D  +   LP +P RIE YD SHI G + V   VV  +    K  
Sbjct: 361 LENTKRHAQQNLLALEDLAQLLDLPSLPHRIEGYDISHIQGSNPVASQVVFIDGVPAKQS 420

Query: 412 YRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           YR + +    +     DD A +  VL RRF              K +      +PD++++
Sbjct: 421 YRHYKIKNPKITIGHSDDFASLAEVLSRRFRSYQNK-------SKTELSKLEDYPDLIMI 473

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQLS+   +L+ +N+   + +IS+AK  +     E F   + + +  +   P +  
Sbjct: 474 DGGKGQLSSVTEILESMNLIPPLKVISLAKKRE-----EIFLPGESKPVTSHPEQPGVQL 528

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           ++R+RDEAHRFA+T HR++R KK+ +S L++I G+G  R++ LL  F ++  I  +S E 
Sbjct: 529 LRRVRDEAHRFAVTFHRQQRLKKSRHSRLEDIPGLGFHRQKQLLAHFHSIDYIREASIEK 588

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           L  + GI + +A +IY++FH N
Sbjct: 589 LQEVSGIGQALATEIYDYFHPN 610


>gi|320156830|ref|YP_004189209.1| excinuclease ABC subunit C [Vibrio vulnificus MO6-24/O]
 gi|319932142|gb|ADV87006.1| excinuclease ABC subunit C [Vibrio vulnificus MO6-24/O]
          Length = 588

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 198/607 (32%), Positives = 314/607 (51%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY      + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTKALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI ++  H+ P +  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFLS-AHRHPRVSLHRGAKKRKGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS   Y E V   + FL G
Sbjct: 120 LHLIQKIFPVRQCEDTVYANRTRPCLMYQIGRCAGPCVSSVISDVDYAELVGYLRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            ++ + E + + M  A+ +  +E A   RD++ A+  +Q       +    MD       
Sbjct: 180 KDNQVLELLVQKMEIASQQLKFEDAAKFRDQIQAIRRVQEQQYVSEDSQEDMDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306
             +ACI       G+  G+ + F K    +   ++   FL Q+Y         P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPQNTNAQEVFDSFLTQYYLSHNEARTIPSRIILN 299

Query: 307 EEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           +E       ++++     G KV+      G + + ++ +  NA  + T K++ +++    
Sbjct: 300 QELAADVEAIQLALSDVAGRKVQFHTSPSGSRGRYLKLSNTNALTAMTTKINHKMTINQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K      A+  I  R+E +D SH MG S +   VV    G VK +YR++N+    +   
Sbjct: 360 FKALRDVLAMDSIA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M   LERR+++ +  E+                PDV+ +DGGKGQL+ A  ++ +
Sbjct: 417 DDYAAMGQALERRYAKQLDVEK---------------IPDVIFIDGGKGQLNRAHEIIAQ 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  +I IAKG  R  G+E      G+   L   DP L+ IQ +RDE+H  AI 
Sbjct: 462 YWGDWPKRPVMIGIAKGVTRKPGLETLITVDGDEFHLPSDDPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 GHRAKRGKTRKTSALEGIEGVGPKRRQALLKYTGGLQELKRASVEEIAKVPGISHSLAEI 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|121594960|ref|YP_986856.1| excinuclease ABC subunit C [Acidovorax sp. JS42]
 gi|120607040|gb|ABM42780.1| Excinuclease ABC subunit C [Acidovorax sp. JS42]
          Length = 657

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 207/650 (31%), Positives = 316/650 (48%), Gaps = 55/650 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D    +LYVGKA NL+KR+ SY    +   RI HM+ +I  +  TV  +
Sbjct: 16  LPPLPGVYRYFDAQNVLLYVGKARNLKKRVSSYFSKQHGGTRIGHMVGRIARLETTVVRS 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRDS 114
           E EALLLE N+IK L P++NIL RDDKS+PY+ IT                P +  +R +
Sbjct: 76  EAEALLLENNLIKSLGPKYNILFRDDKSYPYLKITGVSAKDGTGDAPGQCYPRMAYYRGA 135

Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
              +  YFGP+    AV+++I  LQ+ F LR+C D+VF +RTRPCLL+QIKRCS PC G 
Sbjct: 136 VDKRHRYFGPYPGAWAVKESIQLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSAPCVGL 195

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           IS   Y   V  A+  L G    L + +   M     K ++E A   R+++ AL+ + + 
Sbjct: 196 ISPTAYAADVRSAESMLLGETQELLQTLEERMLAYAEKLEFEQAAEVRNQITALARVLHQ 255

Query: 235 NDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST---------- 281
                     +D  ++      AC+       G++ G   +F     E+T          
Sbjct: 256 QAVETASDKDVDILAVKVAGGRACVNLAMVRGGRHLGDRPYFPVHVEEATGVFQLETRED 315

Query: 282 -----------------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYG 324
                             AQIL+ F+ Q Y   P P  ++ SE  +   +      +Q G
Sbjct: 316 APDNLMVEEAGGLEQSVPAQILAAFIAQHYLGVPLPPTLITSEPVDPALVW--VLAQQTG 373

Query: 325 YKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH---IPKR 381
            +  +    + ++R  +E A  NA     + L+ E S +   +  ++   L         
Sbjct: 374 VRATVVHQPREQRRIWLEMAEQNAQIQLARLLAEEGSQRARTRALSEALDLEAESLDDLT 433

Query: 382 IEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQ 441
           IE +D SH  G +     VV   +     +YR+F      +   DD A MR VL RR+S+
Sbjct: 434 IECFDISHTAGEATQASCVVFHHHKMQSGEYRRF--KIEGITPGDDYAAMRQVLMRRYSK 491

Query: 442 LIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP 501
           + + +              P  PD+V++DGGKGQ+S A+ V ++L ++    I+ + KG 
Sbjct: 492 VAEAQREAGGAEVTNA---PRLPDLVLVDGGKGQVSMARDVFQELGLDIS-RIVGVEKGE 547

Query: 502 KRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLD 558
            R  G+E+     G + + L      L  + ++RDEAHRFAIT  R  R K     S L+
Sbjct: 548 GRKVGLEELVFADGRDKVYLGRDSAALMLVAQIRDEAHRFAITGMRAARAKVRVGGSRLE 607

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +I G+GP ++  LLQ FG V+ ++ +S + LA++EGIS  +A +IY    
Sbjct: 608 DIPGVGPKKRARLLQRFGGVRGVADASVDDLATVEGISHDLAEEIYRALR 657


>gi|17230220|ref|NP_486768.1| excinuclease ABC subunit C [Nostoc sp. PCC 7120]
 gi|21264110|sp|Q8YTI9|UVRC_ANASP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|17131821|dbj|BAB74427.1| excinuclease ABC subunit C [Nostoc sp. PCC 7120]
          Length = 627

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/619 (31%), Positives = 307/619 (49%), Gaps = 29/619 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
           ++P  PGVY M D + R++Y+GK+  L+ R++SY     N T RI  M   +  I F VT
Sbjct: 23  EIPPEPGVYFMRDGSDRIIYIGKSRKLRSRVRSYFREGYNKTERIATMAKLVTEIEFIVT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121
            TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R       +  Y
Sbjct: 83  DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEDYPRIFITRKRQLGKEKDKY 142

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     + + +   +R F LR     +F  + RPCL + + RC G C   IS E+Y 
Sbjct: 143 YGPYTDSGLLREILRISKRIFALRQRPQPLF--KDRPCLNYDLGRCPGVCQQLISPEEYR 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V +      G    L + ++  M +A    ++E A   RD++A L  +          
Sbjct: 201 KTVQKVAMVFQGRTQELIDILSEQMEKAAEALNFEVAARIRDQIAGLKSLTAEQKVSLPD 260

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-- 295
                D  +L  +   ACIQ      GQ  G   F  ++ +E     IL   L + Y   
Sbjct: 261 DTVSRDAIALAGDAQHACIQLFQIRAGQLVGRLAFVAESHAE--PGAILQRVLEEHYQTA 318

Query: 296 -DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  IL+  E  +  +L     +  G KV I  P++  K ++IE    NA     +
Sbjct: 319 ESVEIPAEILVQHELPDAEILADVLTQLKGRKVTIFTPQRQVKAELIEMVERNAQYELQR 378

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                  +    +D      LP++P RIE YD SHI G +AV   VV  +    K  YR 
Sbjct: 379 MQKLGDRNHQATQDLAAILDLPNLPHRIEGYDISHIQGSNAVASQVVFIDGLPAKQNYRH 438

Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           + +    V     DD A +  V++RRF +  ++       P+      P WPD++++DGG
Sbjct: 439 YKIKNPTVTIGHSDDFASLAEVIQRRFRKYAED-------PQLSRVGNPDWPDLIMIDGG 491

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQLS+   VL+++N+   + +IS+AK  +     E F   + + L  +   P +  ++R
Sbjct: 492 KGQLSSVVTVLQEMNLLEDLRVISLAKRRE-----EIFLPGESQPLKTDAEQPGVQLLRR 546

Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFA++ HR++R  K   S LDEI G+G  R++ +L  F +V  I +++P  +A 
Sbjct: 547 LRDEAHRFAVSFHRQQRSDKLKRSRLDEIPGLGHHRQKQMLAHFRSVDYIRQATPSQIAE 606

Query: 592 IEGISKKIACKIYNHFHKN 610
           + GI   +A  IY++FH +
Sbjct: 607 VPGIGPHLAQAIYDYFHPS 625


>gi|257886739|ref|ZP_05666392.1| excinuclease ABC [Enterococcus faecium 1,141,733]
 gi|257822793|gb|EEV49725.1| excinuclease ABC [Enterococcus faecium 1,141,733]
          Length = 592

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 187/613 (30%), Positives = 309/613 (50%), Gaps = 40/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   +++T +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+  P++NI+L+DDK++P++ IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F LR C  S  +    PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E K FL+GG+  ++ +I R M +A    ++E A  +RD++ A+  I              
Sbjct: 187 EVKNFLNGGHEKIESEIHRKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ +  ++ S+  +   K       +  PK+GEK+K++E A  NA    +         
Sbjct: 307 VLIPDTIDKPSVEALLDTK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    + +YRK+ + 
Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S++I+                   PD++++DGGKGQ+  
Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  +AK  K     E  F      + L    P  + +QR++DE H
Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K
Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPK 579

Query: 598 KIACKIYNHFHKN 610
            +A  +++  H+ 
Sbjct: 580 NVAQNVFDKLHQE 592


>gi|238898618|ref|YP_002924299.1| excinuclease UvrABC, endonuclease subunit [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229466377|gb|ACQ68151.1| excinuclease UvrABC, endonuclease subunit [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 607

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/619 (34%), Positives = 339/619 (54%), Gaps = 31/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +    GVY+M D  G V+YVGKA +L+KR+ SY      +H+   ++  I  I  TV
Sbjct: 8   LKTVTHQLGVYRMYDTTGAVIYVGKAKDLKKRLTSYFRKQVSSHKTEALVKHIFKIDVTV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLE N IKR +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 68  THSETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLS-AENHPRLTIHRGARHQKGDYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C ++V+R+R+RPCL +QIKRCSGPC     S E+Y 
Sbjct: 127 GPFPNSYAVRETLTLLQKLFPVRQCENTVYRNRSRPCLQYQIKRCSGPCVKGLTSDEEYQ 186

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V+  + FLSG +  +  K+   M +A+   D+E A   RD++ ++  +        + 
Sbjct: 187 QQVNYVRLFLSGKDQQVLNKLVSQMEEASRSMDFEKAARIRDQIQSVRQVTEKQFVSGDN 246

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
              D  ++     LAC+   F  +G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 247 QDLDVIAVAFEAGLACVHVLFIRYGKVLGSRSYFPKVPGGTKLGEVVETFVGQFYLAGSE 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P+ ILL+    E + L     ++ G K++I    +G++ + ++ A  NA  + + +
Sbjct: 307 MRTLPKEILLNFSLPEKTALSSLLTERAGQKIQIQNCPRGDRARYLKLASTNAVSALSTR 366

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    LK       L  I  R+E +D SH MG   V   VV  E G VK++YR++
Sbjct: 367 LSQKSTFHSRLKALEIVLNLTPIK-RMECFDISHHMGEQTVASCVVFNEQGPVKSEYRRY 425

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL+RR+S+ +K+E+                PD++ +DGGKGQ
Sbjct: 426 NIVG--LPPGDDYAAMSQVLQRRYSKSLKDEQ---------------IPDIIFIDGGKGQ 468

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQ 531
           L+ A  +   L V   +++  ++++AKG +R  G+E  F    G+ + L      L+ IQ
Sbjct: 469 LAKAIDMFSALKVCWNKDKPKLVAVAKGSERKPGLETLFFYVTGKGMSLPCDSLALHLIQ 528

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+H  AIT HR+R  K    S L+ I G+GP R+++LL+  G +K +  +S E +A
Sbjct: 529 HIRDESHTHAITGHRRRHAKIKNTSMLEMIEGVGPRRRQMLLKYMGGLKPLLNASVEEIA 588

Query: 591 SIEGISKKIACKIYNHFHK 609
            I  IS+ +A KIYN   +
Sbjct: 589 KIPNISRILAQKIYNALKQ 607


>gi|238019501|ref|ZP_04599927.1| hypothetical protein VEIDISOL_01370 [Veillonella dispar ATCC 17748]
 gi|237864200|gb|EEP65490.1| hypothetical protein VEIDISOL_01370 [Veillonella dispar ATCC 17748]
          Length = 617

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 186/615 (30%), Positives = 312/615 (50%), Gaps = 34/615 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
               +P  PGVY   D   R++YVGKA NL+ R++SY+ ++ +   ++T M+ +  ++  
Sbjct: 18  KVSHLPTTPGVYLWRDQYNRIIYVGKAINLRNRVRSYVRNDANRAPKVTAMMKRAVDVEI 77

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EAL+LE  +IK  +P++NI LRDDK++PY+ I+ +   P +Y  R        
Sbjct: 78  IQTKTEMEALILENTLIKEHEPKYNIRLRDDKTYPYVKISVQEDYPRVYMTRRLERDGAK 137

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF  V +V   +  +++ + LR+C         RPCL + +  C  PC  +IS   Y
Sbjct: 138 YFGPFTDVTSVHVVLKLIRQYYPLRTCKSMKVE---RPCLQYHMHYCEAPCFNKISIPDY 194

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +++ E  +   G    L ++I   M  A     +E A  +RD+L+++  IQ     +  
Sbjct: 195 RKYIDEIIELFEGKPIPLLKEIKEKMELAAEDLQFEDAARYRDQLSSIEKIQEKQRMVTQ 254

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D   +  + ++AC+Q  F   G+  G   +F++ D +S    +  +  + +     
Sbjct: 255 RGDLDVLGIAVDTSMACVQLLFIRGGRLLGRENYFVQHDGDSPETIMTDFIKQYYGDTNF 314

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354
            P+ +LL  ++ +  LL   F +  G  V+++VP++G K  +I+ A  NA         Q
Sbjct: 315 IPKELLLPMDSSDRDLLSEWFTQLKGQNVEVSVPQRGYKMDMIKMAHENAETFLEERRRQ 374

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +K   +   LP +P+R+E +D SH  G   V  MVV       K +YR+
Sbjct: 375 WQYQIDKTGGAVKKLAEVLDLPRLPERMECFDISHTQGAETVASMVVFEGGKPAKKEYRR 434

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F L        DD   M  ++ERR+                   +    PD++I+DGGKG
Sbjct: 435 FKLKTTQG-KPDDFKSMAEIMERRY----------------GNETDWPMPDLIIIDGGKG 477

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QL+AA  +++ + V + + +IS+AK  +     E F   + E+++L+   P L  +Q++R
Sbjct: 478 QLNAALPLIRAVGVTD-VPVISLAKRIE-----EVFVEGQSESIILSHHTPELQLLQQIR 531

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HRK R K+   S LD I GIGP R++ L   F +++ +  +S + L+ +E
Sbjct: 532 DEAHRFAITYHRKLRGKRNLESILDHIEGIGPKRRKALWAHFNSLEAMKEASIDELSKVE 591

Query: 594 GISKKIACKIYNHFH 608
            ++ K A  +YN F 
Sbjct: 592 SMNYKTAEALYNFFR 606


>gi|89073042|ref|ZP_01159589.1| excinuclease ABC subunit C [Photobacterium sp. SKA34]
 gi|89051260|gb|EAR56716.1| excinuclease ABC subunit C [Photobacterium sp. SKA34]
          Length = 589

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 208/608 (34%), Positives = 329/608 (54%), Gaps = 31/608 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D AG V+YVGKA +L+KR+ SY  +N    +   ++  I N+  TVT TE EAL+LE 
Sbjct: 1   MYDAAGVVIYVGKAKDLKKRLSSYFRTNVAGEKTRALVKNICNVDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYIL++   K P L  HR     +G YFGP+  V AV ++
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYILLSAS-KHPRLSIHRGVKRRKGEYFGPYPDVGAVRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C DSV+ +R+RPCL++QI RCSGPC    IS + Y + V   + FL G
Sbjct: 120 LHLIQKIFPVRQCEDSVYANRSRPCLMYQIGRCSGPCVEGLISDDDYQQQVQLVRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250
            +  +   + + M QA+   ++E A  +RD++ AL  IQ       +  D      + H+
Sbjct: 180 KDRQVISIMVKKMEQASQALEFEQAARYRDQIQALRRIQEQQFVSQDNEDDIDVIGIAHS 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306
             LACI   +   G+  G+ ++F K   ++T  ++LS F+ Q+Y      +  P  ILLS
Sbjct: 240 NGLACIHGLYIRQGKILGSRSYFPKVPIDATLTEVLSGFVTQYYFNQVEGRVIPSVILLS 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           E   EE   +  +  +  G  +      +G + + ++ A  NA  + T K++  ++ Q  
Sbjct: 300 ETLGEEGETIAKALTEMAGRTITFKYNSRGTRAQYLKLAKTNAETALTSKINHRLTIQER 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
                +   L  I  R+E +D SH MG   V   VV  + G +K +YR++N+    +   
Sbjct: 360 FFALQQALNLKPIS-RMECFDISHTMGEKTVASCVVFNQEGPLKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+S+ ++ ++                PD++ +DGG+GQLS A  V+K 
Sbjct: 417 DDYAAMAQVLERRYSKNMELDK---------------IPDIIFIDGGRGQLSTAYDVVKP 461

Query: 486 --LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  ++ +AKG  R  G+E      GE   +    P L+ IQ +RDE+H  AI+
Sbjct: 462 YIADWPKRPLLVGVAKGTTRKPGLETLIFVTGEEFSMPSDSPALHLIQHIRDESHNHAIS 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+++ GIGP R++ LL+  G ++ + +++ E +A + GIS  +A K
Sbjct: 522 GHRAQRAKVRKRSSLEDVEGIGPKRRQALLKYMGGMQELKKANKEEIAKVPGISPALAEK 581

Query: 603 IYNHFHKN 610
           I +    N
Sbjct: 582 IVDALQHN 589


>gi|303257851|ref|ZP_07343861.1| excinuclease ABC subunit C [Burkholderiales bacterium 1_1_47]
 gi|302859454|gb|EFL82535.1| excinuclease ABC subunit C [Burkholderiales bacterium 1_1_47]
          Length = 617

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 211/620 (34%), Positives = 334/620 (53%), Gaps = 34/620 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  D  G +LYVGKA +L++R+ SY        R   M+ QI + + TV
Sbjct: 14  LKNLPHLPGVYRYFDKDGNLLYVGKARDLKRRVSSYFQKT-LAPRTKLMVDQIASAQITV 72

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E EAL+LE+N+IK   PRFNIL RDDKS+PY+ ++     P L  +R +   + SYF
Sbjct: 73  VNSEAEALILESNLIKTQDPRFNILFRDDKSYPYLKLSSGE-YPRLSYYRGALDKRNSYF 131

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +A + T+  LQ+ F LR+C  SVF +R+RPCLL+QI RCSG C  ++S E+Y +
Sbjct: 132 GPYPNANAAKDTMLLLQKVFQLRTCETSVFNNRSRPCLLYQIGRCSGGCCKKVSPEEYGK 191

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V  AK+FL G +  ++E + R MN+ + K D+E A + RD LAA+S++ +         
Sbjct: 192 SVDLAKEFLRGDSQKVQEDLTRRMNEYSQKLDFERAAVMRDHLAAISNVIHQQSMEAAPD 251

Query: 243 ---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL---KTDSESTNAQILSYFLRQFYTD 296
              D  +    +   C+       G++ G    F    +        ++L  F+   YT 
Sbjct: 252 ANADIIAAVAAQGEVCVNLAMVRGGRHLGDKASFPSLGRNAELPELEEVLEAFITHHYTQ 311

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  ++++ E E +  +E       G KV +    Q  +RK +E A+ NA  S  +K+
Sbjct: 312 MDVPPVVIINLE-ERSPRIEELLNTIAGKKVSVIYRPQNIRRKWLELAVTNAKVSLGRKV 370

Query: 357 STEISHQMILKDFTKKFALP-----HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
           + E S +  +    ++  L      +   R+E +D SH  G +     VV   N    +Q
Sbjct: 371 AEEGSQKKRIGALVQELGLDIPESEYEDFRVECFDISHSSGEATQASCVVFAGNRMDSSQ 430

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR+FN+    V   DD A M+ VL RR+ ++   E               + P++V++DG
Sbjct: 431 YRRFNIKD--VTAGDDYAAMKQVLTRRYQRVANGE--------------ATLPNIVLVDG 474

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK--GEALVLNMRDPILYF 529
           G+GQ+  A  V  +L ++  + I+ +AKG  R  G+E+        E L L    P L  
Sbjct: 475 GRGQVKMACEVFDELGLDKNV-IVGVAKGEGRKVGLEELVFPDPNKEPLKLGQESPALML 533

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I ++RDEAHRFAIT  R +R KA  YS ++++ G+G  R++ LL+ FG++K++S +S E 
Sbjct: 534 IAQIRDEAHRFAITGMRAKRAKARNYSRIEDLEGVGSKRRQKLLERFGSLKVLSNASVED 593

Query: 589 LASIEGISKKIACKIYNHFH 608
           +AS++GIS+ +A +IY   H
Sbjct: 594 IASVDGISQTLARQIYAQLH 613


>gi|251798785|ref|YP_003013516.1| excinuclease ABC, C subunit [Paenibacillus sp. JDR-2]
 gi|247546411|gb|ACT03430.1| excinuclease ABC, C subunit [Paenibacillus sp. JDR-2]
          Length = 626

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 184/629 (29%), Positives = 301/629 (47%), Gaps = 47/629 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +  G ++YVGKA  L+ R++SY + + H  +   ++S+I +  + +T +
Sbjct: 26  LPDQPGCYLMKNGEGTIIYVGKAKVLKNRVRSYFNGS-HNGKTQRLVSEIRDFDYIITSS 84

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  PR+N+LL+DDK+FPYI IT+  K P L   R     +G YFGP+
Sbjct: 85  NMEALILECNLIKQYHPRYNVLLKDDKTFPYIKITN-EKHPRLEVTRRVVKDKGKYFGPY 143

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++T   L R + LR C         + CL + I +C  PC  ++   +Y   + 
Sbjct: 144 PNAFAAQQTKKLLDRLYPLRKCGTLP----DKVCLYYHIGQCIAPCEYDVEQGQYDAMIQ 199

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  +K +I R M  A  + ++E A  +RD++ ++  +        N     
Sbjct: 200 EITKFLNGGHDAVKAEIHRKMEAAAEELNFERAKEYRDQIISIDAVIEKQKITMNDALDR 259

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F     K   C+Q  +   G+             E         F+ Q+Y+D P    
Sbjct: 260 DIFGYAVEKGWMCVQILYMRQGKMIERRGTTFPYYGEE--YDDFMTFVTQYYSDNPALPK 317

Query: 303 ILLSEEAEETSL---------LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
            +L     E             E +       KVK+ +P++G K + +  A+ NA  +  
Sbjct: 318 QILLPLPAEEEEGTAESSTASDEFATMLHNWLKVKVLMPQRGRKSEAVSMAIDNAKIALA 377

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                    E       +   +   LP +  RIE +DNS+I G + V  MVV  +    +
Sbjct: 378 DKFRLIERDEERSVRASEGLAEWLGLPEVR-RIEAFDNSNIQGTNPVSAMVVFTDGKPDR 436

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            +YRK+ +    V   DD   MR V+ RR+ +++K ++              + PD++++
Sbjct: 437 KEYRKYKVKT--VVGADDYETMREVIRRRYERMLKEQQ--------------TPPDLIVV 480

Query: 470 DGGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           DGGKGQ+SAA  +   +L +   I +  + K  K             E + L       Y
Sbjct: 481 DGGKGQISAALDILQNELGLY--IPVCGLVKDAKHKTAQ-LMTGDPPEVVPLPRDSQEFY 537

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +QR++DE HRFAI+ HR++R K    S LD I GIG  R++LLL+ FG++K I  +S E
Sbjct: 538 LLQRIQDEVHRFAISFHREQRGKSMIASQLDAIPGIGEKRRKLLLKHFGSIKKIKEASIE 597

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTPT 616
               +  I +K+A +I    ++      T
Sbjct: 598 DFKPL-SIGEKLASQILAALNEEVKDKET 625


>gi|302336068|ref|YP_003801275.1| Excinuclease ABC subunit C [Olsenella uli DSM 7084]
 gi|301319908|gb|ADK68395.1| Excinuclease ABC subunit C [Olsenella uli DSM 7084]
          Length = 678

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 173/634 (27%), Positives = 295/634 (46%), Gaps = 49/634 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PG Y   D  G V+YVGKA NL+ R+  Y++  +   +I  M+  + +  + V  
Sbjct: 34  QVPTEPGCYLWKDGRGEVIYVGKAKNLRSRMLQYVNLTDDRAKIPLMMQVVRSFDYVVVG 93

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+I +  P FN+  +DDKS+PYI IT+    PA+   R+       YFGP
Sbjct: 94  SEHEALVLERNLIAQYHPYFNVDFKDDKSYPYIAITEDDAFPAIKYTRERHRKGTRYFGP 153

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRT---------------------RPCLLFQ 163
           +    A  +TI++L++   +   + + ++                        RPC  + 
Sbjct: 154 YTDSHAARETIDTLRKAVPICIASCTEWKRARRYLKGHPDDVAIANLVLGEHCRPCFDYH 213

Query: 164 IKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223
           + R  G C G+I +  Y   V + +KFLSG    +  ++   M++A    ++E A   + 
Sbjct: 214 VGRGPGVCCGQIDTVDYAAHVRQVEKFLSGRRAEICGELEDQMHEAASNLEFERAARIKR 273

Query: 224 RLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280
           RL  +  + +     +      D    Y  + ++C        G+   +  F L   ++ 
Sbjct: 274 RLEVIDGLDDRQQVTFPTSVNLDLIGFYREETISCACVFVVREGRTIRSSEFILNKGADV 333

Query: 281 TNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339
              ++   F++++Y +    P  + +     +  LL     ++ G  V +  P++GEK  
Sbjct: 334 DEVELTGGFVKRYYDETADIPAEVDVRCALPDAELLGGWLTEKRGLAVHVHRPQRGEKSH 393

Query: 340 IIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395
           +++ A  NA  +  + +      +      L       AL   P RIE +D S + G   
Sbjct: 394 LLDMAERNARHALMRYMVRTGYADDRTNQALLQLESALALDAPPLRIECFDISTLHGNFT 453

Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455
           V  MVV       K QYR+F +    +   +D   M  VL RR+              + 
Sbjct: 454 VASMVVFTNGRPDKGQYRRFKVRSQ-LDEANDFVSMGEVLGRRY-----------APERM 501

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
            +  F S PD++++DGGK QL+AA   L  L ++  I +  +AK  +     E F     
Sbjct: 502 ADERFGSRPDLLVVDGGKPQLTAALRQLGALGLD--IPVCGLAKSDE-----EVFVPWDE 554

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQS 574
             +VL      LY I+++RDE+HRFAIT HR+ R KA   S LD+I G+GP RK+ +++ 
Sbjct: 555 TPVVLPSGSASLYLIKQVRDESHRFAITFHRELRDKAMTISVLDDIEGVGPKRKKAIMRH 614

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           FG++K +  +SP  +AS+ G+ + +A  ++    
Sbjct: 615 FGSLKRLRAASPGEIASVRGVPEAVARDVWQTLR 648


>gi|315223178|ref|ZP_07865039.1| excinuclease ABC subunit C [Streptococcus anginosus F0211]
 gi|315187610|gb|EFU21364.1| excinuclease ABC subunit C [Streptococcus anginosus F0211]
          Length = 602

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 173/623 (27%), Positives = 296/623 (47%), Gaps = 41/623 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 11  KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 70  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDGGLY 128

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + I +C            + 
Sbjct: 129 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----EKVCFYYHIGQCRAHTICHNEPHFFQ 184

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E   FL G +  + +++ R M  A  K ++E A  +RD L +++ ++     +   
Sbjct: 185 DMAQEVSDFLKGHDDKIIDELKRKMTSAADKMEFEKAAEYRDLLQSIATLRTKQRVMAKD 244

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 245 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNMFPYYNDPDEDFLTYIGQFYQEKSHL 304

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354
            P  IL+  + ++ ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 305 IPNEILIPSDIDDVAVQAVVDTKILK-------PQRGEKKQLVNLAIKNAQVSLQQKFDL 357

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 358 LEKSVEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFINGKPSKKDYRK 416

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S+++++                  PD++++DGG+G
Sbjct: 417 YKIKT--VVGPDDYASMREVIKRRYSRVMRDG--------------LIPPDLIVIDGGRG 460

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++   +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 461 QVNIAKDVIQH-QLGLDIPIAGLQKNDKHQT-HELLFGDPLKVVELSRNSQEFFLLQRIQ 518

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I ++S + +  + 
Sbjct: 519 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMRHFKSLTNIKKASVDEIVEV- 577

Query: 594 GISKKIACKIYNHFHKNTSHTPT 616
           G+ +K+A  +     K+T    T
Sbjct: 578 GVPRKVAEAVQEKLSKSTDKKIT 600


>gi|170761411|ref|YP_001788709.1| excinuclease ABC subunit C [Clostridium botulinum A3 str. Loch
           Maree]
 gi|229558020|sp|B1L273|UVRC_CLOBM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|169408400|gb|ACA56811.1| excinuclease ABC, C subunit [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 618

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 187/619 (30%), Positives = 314/619 (50%), Gaps = 19/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G ++YVGKA  L+ R++ Y   +  H+ ++  M+  I    +
Sbjct: 7   QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T     P +   R  +     
Sbjct: 67  IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVISTRKVTKDGSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    +V+  I  +++TF +R+C  ++       RPCL +QI  C  PC   I   
Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y E + +  K LSG + ++ E    NM +A    ++E A + RD++  +  I       
Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              ++  D  SLY +    C Q  F   G+  G   F ++   ++ ++ ++S FL++FY 
Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +     E+ +LLE     +   K  I +P +GEK+ I++    NA       
Sbjct: 307 GTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILDLVEKNAKTTLENF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  +  +  +LKD     +L   P RIE +D S+I G  +VG MVV  +     + 
Sbjct: 367 KLKYLQEKALYDNVLKDLKNILSLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F    + VK  DD   M+ +L RRF   +   +   +   +     F  +PD++++D
Sbjct: 427 YRRF--KISTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL   N++  I +  + K  K         +  GE +++N    ++ FI
Sbjct: 485 GGKGQINIALEVLNTFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAI+ HR  R K + +S LD+I  IG  RK+ LL +F ++  I +++ E L
Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599

Query: 590 ASIEGISKKIACKIYNHFH 608
            SI  + KK A  +   F 
Sbjct: 600 LSIPSMDKKSAESVLEFFK 618


>gi|125718113|ref|YP_001035246.1| excinuclease ABC subunit C [Streptococcus sanguinis SK36]
 gi|189038125|sp|A3CNE1|UVRC_STRSV RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|125498030|gb|ABN44696.1| Nuclease subunit of the excinuclease complex, subunit C, putative
           [Streptococcus sanguinis SK36]
          Length = 611

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 170/622 (27%), Positives = 293/622 (47%), Gaps = 41/622 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D    ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNDTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-ETYPRLIITRQVKKDVGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + + +C      ++ S+ + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRLFPFRKCTNPP----EKVCFYYHLGQCKAHTICKVDSQYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   E   FL G +  + E +   M  A    ++E A  +RD + ++  ++     +   
Sbjct: 182 ELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 KPNEILIPADIDEEAVRAMVDTKVLK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSIEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S++I++                + PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVIRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    + + L+      + +QR++
Sbjct: 458 QVNIAKEVIQE-QLGLDIPIAGLQKNDKHQT-HELLFGDPLQVVELSRNSQEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +  + 
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSLTKIKEASVDQIVEV- 574

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
           G+ + +A  +    +  T    
Sbjct: 575 GVPRAVAEAVREKLNPKTQEQE 596


>gi|186684085|ref|YP_001867281.1| excinuclease ABC subunit C [Nostoc punctiforme PCC 73102]
 gi|229558461|sp|B2J6D3|UVRC_NOSP7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|186466537|gb|ACC82338.1| excinuclease ABC, C subunit [Nostoc punctiforme PCC 73102]
          Length = 625

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 192/618 (31%), Positives = 305/618 (49%), Gaps = 29/618 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
           ++P  PGVY M D + R++Y+GK+  L+ R++SY     N T RI  M+  +  I F VT
Sbjct: 23  EIPPEPGVYFMRDNSDRIIYIGKSRKLRSRVRSYFRDGYNKTERIATMVKLVTEIEFIVT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121
            TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R       +  +
Sbjct: 83  DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEDYPRIFITRKRQLGKEKDKF 142

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     + + +   +R F  R     +F  + RPCL + + RC G C    S E+Y 
Sbjct: 143 YGPYTDAGLLREIVRICKRIFPQRQRPQPLF--KDRPCLNYDLGRCPGVCQKLTSPEEYR 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V +      G    L + + + MN A    ++ESA   RD+++ L  +          
Sbjct: 201 KIVQKIAMVFQGRTQELIDILTQQMNAAAENLNFESAARIRDQISGLKSLTADQKVSLPD 260

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-- 295
                D  +L  N+  ACIQ      GQ  G        D+ +    IL   L + Y   
Sbjct: 261 DTVSRDAIALAANEEHACIQLFQIRAGQLVGR--LAFVADAHAELGAILQRALEEHYQTA 318

Query: 296 -DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  IL+  +  ++ +L     ++ G KV I  P +  K ++IE    NA     +
Sbjct: 319 DSVEIPLEILVQHDLPDSDILADVLTQRKGKKVTILTPLRQTKAELIEMVERNAQYELQR 378

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                  +   ++D      LP +P RIE YD SHI G +AV   VV  +    K  YR 
Sbjct: 379 MQKFGDRNHQAMQDLAAILDLPDVPHRIEGYDISHIQGSNAVASQVVFIDGLPAKQHYRH 438

Query: 415 FNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           + +    V      D A +  V++RRF +  ++       P+      P WPD++++DGG
Sbjct: 439 YKIKNPTVTAGHSDDFASLAEVIQRRFRKYAED-------PQLSRLGNPDWPDLIMIDGG 491

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQLS+   VL+++N+   + ++S+AK  +     E F   + +    +   P +  ++R
Sbjct: 492 KGQLSSVTAVLQEMNLLEDLRVVSLAKQRE-----EIFLPGESKPSSTDAEQPGVQLLRR 546

Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFA++ HR++R  K   S LDEI G+G  R++ LL  F +V  I +++   LA 
Sbjct: 547 LRDEAHRFAVSFHRQQRSDKLKRSRLDEIPGLGHHRQKQLLGHFRSVDYIRQATTPQLAE 606

Query: 592 IEGISKKIACKIYNHFHK 609
           + GI  ++A +IY++FH 
Sbjct: 607 VPGIGPRLAQEIYDYFHP 624


>gi|167856418|ref|ZP_02479141.1| UvrABC system protein C [Haemophilus parasuis 29755]
 gi|167852459|gb|EDS23750.1| UvrABC system protein C [Haemophilus parasuis 29755]
          Length = 591

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 210/607 (34%), Positives = 328/607 (54%), Gaps = 32/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G ++YVGKA +L+KR+ SY  SN  + +   ++SQI +I  T+T +E EALLLE 
Sbjct: 1   MYDDKGTIIYVGKAKDLKKRLSSYFRSNLASRKTEALVSQIAHIDTTITHSETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +P++N+LLRDDKS+PYIL+T KH+ P L   R S  I G YFGP+ +  AV +T
Sbjct: 61  NYIKENQPKYNVLLRDDKSYPYILLT-KHQHPRLASFRGSKKIAGEYFGPYPNAGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193
           +N LQ+ F +R C DS +++R+RPCL +QI RC  PC     S  +Y + V   + FL G
Sbjct: 120 LNLLQKLFPIRQCEDSYYKNRSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250
            +  + E +   M +A    D+E+A   RD++  +  +           + +D  S+ + 
Sbjct: 180 KDQQVIEHLIGKMEKAAEDLDFEAAARFRDQIQQMRVVTEKQFVSNERLDDLDIISIAYQ 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306
             +AC+   F   G+  G+ ++F K  + +  A++   F+ QFY      +  P  I++ 
Sbjct: 240 HGIACVHILFVRQGKMLGSRSYFPKVPNHTEFAELSDTFIGQFYLQMNQHRTIPHQIIID 299

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
               E   LE    +Q G+KV IT   +GEK + +  A  NA  + T +L  +   Q   
Sbjct: 300 HSVSEVDALEKVLSEQAGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRY 359

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           +      +LP I  R+E +D SH MG   V   VV  ENG +K+ YR+FN+    +   D
Sbjct: 360 EALQAVLSLPKIA-RMECFDISHTMGEQTVASCVVFDENGPLKSDYRRFNIEG--ITGGD 416

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A M   L +R+ + +  E+                PD++ +DGGKGQL+ A      L
Sbjct: 417 DYAAMEQALLKRYDKPLPPEK---------------IPDIIFIDGGKGQLNRALDTFANL 461

Query: 487 NVE---NRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
            VE   ++  +I +AKG +R AG+E   + K  + + L    P L+ IQ +RDE+H  AI
Sbjct: 462 KVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAI 521

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           + HRK+R+KA   S L+ I G+G  R+ LLL+  G ++ +  ++ + + S+ GIS  +A 
Sbjct: 522 SGHRKKRQKAFTESGLEAIAGVGAKRRHLLLKYLGGMQGVKSATLDEIKSVPGISVSLAE 581

Query: 602 KIYNHFH 608
            I++  +
Sbjct: 582 IIFDTLN 588


>gi|69245124|ref|ZP_00603248.1| Excinuclease ABC, C subunit [Enterococcus faecium DO]
 gi|257879662|ref|ZP_05659315.1| excinuclease ABC [Enterococcus faecium 1,230,933]
 gi|257890328|ref|ZP_05669981.1| excinuclease ABC [Enterococcus faecium 1,231,410]
 gi|258616729|ref|ZP_05714499.1| excinuclease ABC subunit C [Enterococcus faecium DO]
 gi|260559676|ref|ZP_05831856.1| excinuclease ABC [Enterococcus faecium C68]
 gi|293560078|ref|ZP_06676582.1| excinuclease ABC, C subunit [Enterococcus faecium E1162]
 gi|314938139|ref|ZP_07845444.1| excinuclease ABC subunit C [Enterococcus faecium TX0133a04]
 gi|314943820|ref|ZP_07850555.1| excinuclease ABC subunit C [Enterococcus faecium TX0133C]
 gi|314949779|ref|ZP_07853089.1| excinuclease ABC subunit C [Enterococcus faecium TX0082]
 gi|314951187|ref|ZP_07854245.1| excinuclease ABC subunit C [Enterococcus faecium TX0133A]
 gi|314994418|ref|ZP_07859702.1| excinuclease ABC subunit C [Enterococcus faecium TX0133B]
 gi|314995614|ref|ZP_07860708.1| excinuclease ABC subunit C [Enterococcus faecium TX0133a01]
 gi|68195967|gb|EAN10400.1| Excinuclease ABC, C subunit [Enterococcus faecium DO]
 gi|257813890|gb|EEV42648.1| excinuclease ABC [Enterococcus faecium 1,230,933]
 gi|257826688|gb|EEV53314.1| excinuclease ABC [Enterococcus faecium 1,231,410]
 gi|260074344|gb|EEW62666.1| excinuclease ABC [Enterococcus faecium C68]
 gi|291605945|gb|EFF35375.1| excinuclease ABC, C subunit [Enterococcus faecium E1162]
 gi|313590202|gb|EFR69047.1| excinuclease ABC subunit C [Enterococcus faecium TX0133a01]
 gi|313591190|gb|EFR70035.1| excinuclease ABC subunit C [Enterococcus faecium TX0133B]
 gi|313596666|gb|EFR75511.1| excinuclease ABC subunit C [Enterococcus faecium TX0133A]
 gi|313597544|gb|EFR76389.1| excinuclease ABC subunit C [Enterococcus faecium TX0133C]
 gi|313642486|gb|EFS07066.1| excinuclease ABC subunit C [Enterococcus faecium TX0133a04]
 gi|313643852|gb|EFS08432.1| excinuclease ABC subunit C [Enterococcus faecium TX0082]
          Length = 592

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 187/613 (30%), Positives = 310/613 (50%), Gaps = 40/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   +++T +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+  P++NI+L+DDK++P++ IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F LR C  S  +    PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E KKFL+GG+  ++ +I + M +A    ++E A  +RD++ A+  I              
Sbjct: 187 EVKKFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYLGQFYQENEHFIPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ +  ++ S+  +   K       +  PK+GEK+K++E A  NA    +         
Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    + +YRK+ + 
Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S++I+                   PD++++DGGKGQ+  
Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  +AK  K     E  F      + L    P  + +QR++DE H
Sbjct: 463 AKDVL-ENQLGIDIPIAGMAKNDKHKT-NELLFGIDLAVVPLERNSPEFFLLQRIQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K
Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579

Query: 598 KIACKIYNHFHKN 610
            +A  +++  H+ 
Sbjct: 580 NVAQNVFDKLHQE 592


>gi|257882658|ref|ZP_05662311.1| excinuclease ABC [Enterococcus faecium 1,231,502]
 gi|294622754|ref|ZP_06701709.1| excinuclease ABC, C subunit [Enterococcus faecium U0317]
 gi|257818316|gb|EEV45644.1| excinuclease ABC [Enterococcus faecium 1,231,502]
 gi|291597805|gb|EFF28942.1| excinuclease ABC, C subunit [Enterococcus faecium U0317]
          Length = 592

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 185/613 (30%), Positives = 308/613 (50%), Gaps = 40/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   +++T +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNT-KTERLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+  P++NI+L+DDK++P++ IT+  K P L   R     +  YFGP+
Sbjct: 71  NIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITN-EKYPRLVITRKVLKDKALYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F LR C  S  +    PCL + + +C  P   ++  + Y + V 
Sbjct: 130 PDVGAANETKKILDRLFPLRKCKPSQTKE---PCLYYHLGQCLCPYYFDVDPKVYTKIVD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E K FL+GG+  ++ +I + M +A    ++E A  +RD++ A+  I              
Sbjct: 187 EVKNFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E+    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYLGQFYQENEHFIPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +L+ +  ++ S+  +   K       +  PK+GEK+K++E A  NA    +         
Sbjct: 307 VLIPDTIDKPSVEALLATK-------VLQPKRGEKKKLVELASKNASVALNERFDLIARK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++       +P    RIE +DNS+IMG + V  MVV  +    + +YRK+ + 
Sbjct: 360 QERTIGAVERLGNAMNIPTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S++I+                   PD++++DGGKGQ+  
Sbjct: 419 T--VNGPDDYASMREVIYRRYSRVIREG--------------LPLPDLILIDGGKGQVDV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  + K  K     E  F      + L    P  + +QR++DE H
Sbjct: 463 AKDVL-ENQLGIDIPIAGMVKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRIQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K
Sbjct: 521 RFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEI-GLPK 579

Query: 598 KIACKIYNHFHKN 610
            +A  +++  H+ 
Sbjct: 580 NVAQNVFDKLHQE 592


>gi|218245950|ref|YP_002371321.1| excinuclease ABC subunit C [Cyanothece sp. PCC 8801]
 gi|257058998|ref|YP_003136886.1| excinuclease ABC subunit C [Cyanothece sp. PCC 8802]
 gi|218166428|gb|ACK65165.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 8801]
 gi|256589164|gb|ACV00051.1| excinuclease ABC, C subunit [Cyanothece sp. PCC 8802]
          Length = 617

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 209/622 (33%), Positives = 319/622 (51%), Gaps = 35/622 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61
            +++P  PGVY M +  G +LY+GK+  L+ R++SY   +  H+ RI  M+ Q+ +I F 
Sbjct: 18  LKELPSEPGVYLMRNQGGEILYIGKSKKLRSRVRSYFRPSQPHSPRIGLMVQQVADIEFI 77

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119
           VT TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R       + 
Sbjct: 78  VTDTEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSQTYPRIFITRKRRLNNERD 137

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+     + +T+  ++R F LR     +F  + RPCL + I +C G C G IS E 
Sbjct: 138 RYYGPYVDTHLLRQTLQLVKRVFPLRQRPKPLF--KDRPCLNYDIGKCPGVCQGLISPED 195

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + V +      G    L EK+ + M +A  +  +E A + RD+L AL+ +        
Sbjct: 196 YHKIVEKVAMIFQGRTGELLEKLHQQMEKAATELRFEQAAMIRDQLKALNALTVDQKVSL 255

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  +    CIQ      G+  G   FF   +S +T   IL   L   Y 
Sbjct: 256 PDDTISRDAIALAKDTKHCCIQLFQIRAGRLVGRLGFFADAES-ATPGAILQRVLEDHYW 314

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  IL+  E  E+ +L      + G KV ITVP++  K ++IE    NA+   
Sbjct: 315 QADGVEIPSEILVQYELPESEILAQWLSDRKGKKVTITVPQRQTKAQLIELVERNANYEL 374

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +   T   + + L+D  +   LP +P+RIE YD SHI G +AV   VV  +    K  Y
Sbjct: 375 ERTQRTTERNLISLEDLAQILDLPDLPRRIEGYDISHIQGSNAVASQVVFIDGIPAKQHY 434

Query: 413 RKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           R + +   +V     DD A M  V+ RRF                 +     +PD++++D
Sbjct: 435 RHYKIKNPNVTIGHSDDFASMAEVIGRRFRH--------------NQAKNIDYPDLIMID 480

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLSA   +L++LN+   + +IS+AK  +     E F   +   L  N   P +  +
Sbjct: 481 GGKGQLSAVVAILEELNLLETLEVISLAKQRE-----EIFLPGESYPLDTNAEQPGVQLL 535

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           +R+RDEAHRFA++ HR++R KK+  S LDEI G+G  R++ LL  F ++  I  +S E L
Sbjct: 536 RRVRDEAHRFAVSFHRQQRLKKSRRSRLDEIPGLGFERQKQLLAYFHSIDYIREASIEQL 595

Query: 590 ASIEGISKKIACKIYNHFHKNT 611
             + GI K +A +IY +FH ++
Sbjct: 596 QQVSGIGKALATEIYRYFHPSS 617


>gi|172060078|ref|YP_001807730.1| excinuclease ABC subunit C [Burkholderia ambifaria MC40-6]
 gi|229558022|sp|B1YVN3|UVRC_BURA4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|171992595|gb|ACB63514.1| excinuclease ABC, C subunit [Burkholderia ambifaria MC40-6]
          Length = 684

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 203/670 (30%), Positives = 311/670 (46%), Gaps = 70/670 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D AG VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHMPGVYRYYDTAGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R S   Q  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-AHRFPRMAYYRGSVDKQNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS++ Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAISADDYAIDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 198 SNAARFLLGRQSEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSDSD 257

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  ++       C+       G++ G   +F      +               D     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVESALTLAEGGLGDEADGADGADEA 317

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN-------------- 347
              L  E  + +                +V  +     I +  L N              
Sbjct: 318 AAALPGEPADEAAAARDAASAASSASSASVEAEVLDAFIAQHYLGNRVPPVLVVSHAPAS 377

Query: 348 -----------------------------------AHRSHTQKLSTEISHQMILKDFTKK 372
                                              A  +  + LS + S Q   +   + 
Sbjct: 378 RDLLELLSEQAGHKVSLVRQPQGQRRAWLSMAEQNARLALARLLSEQGSQQARTRALAET 437

Query: 373 FALPHI---PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429
            +         RIE +D SH MG +     VV   +     +YR++N+    +   DD A
Sbjct: 438 LSFECDDLAMLRIECFDISHTMGEATQASCVVYHHHKMQSGEYRRYNI--TGITPGDDYA 495

Query: 430 MMRMVLERRFSQLIK---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            MR VL RR+ ++++         +   ++    +Q  +    P++V++DGGKGQ+  A+
Sbjct: 496 AMRQVLTRRYEKMVEQAAQAAAADDAAGIDGESTRQAEASSLLPNIVLIDGGKGQVEIAR 555

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHR 539
            V  +L ++  + ++ +AKG  R  G+E      G   L L      L  + ++RDEAHR
Sbjct: 556 QVFTELGLDTSM-LVGVAKGEGRKVGLETLVFADGRTPLELGKESAALMLVAQIRDEAHR 614

Query: 540 FAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT  R +R KA   S L+E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS  
Sbjct: 615 FAITGMRAKRAKARQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVEELASVEGISHA 674

Query: 599 IACKIYNHFH 608
           +A +IY   H
Sbjct: 675 LAEQIYKQLH 684


>gi|154686983|ref|YP_001422144.1| excinuclease ABC subunit C [Bacillus amyloliquefaciens FZB42]
 gi|189038022|sp|A7Z7D7|UVRC_BACA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|154352834|gb|ABS74913.1| UvrC [Bacillus amyloliquefaciens FZB42]
          Length = 590

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 177/613 (28%), Positives = 304/613 (49%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVSEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDK++P+I IT   + P L   R+    +G YFGP+
Sbjct: 71  NLEALILEMNLIKKYDPKYNVMLKDDKTYPFIKIT-HERHPRLIVTRNVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+    +   R CL + + +C  PC  +IS E   E V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNREIVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           +  +FL GG++ +K+++   M +A  K ++E A   RD+LA +           N     
Sbjct: 186 DITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMNDLLDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           IL+ +  +   + E+        +  +  PK+G K++++  A  NA  +     +     
Sbjct: 306 ILVPDSVDRDMITELL-------ETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E       +   +   + + P RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERSIGAAERLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPNKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR++++++                   PD++I+DGGKGQ++A
Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L ++  + +  +AK  K             E + L       Y +QR++DE 
Sbjct: 462 ARDVLENELGLD--VPVAGLAKDDKHRTSN-LLIGDPLEPVFLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+ + S LD+I GIG  RK++LL+ FG+VK +  +S + +    G+ 
Sbjct: 519 HRFAISFHRQIRGKSVFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLDDIKKA-GVP 577

Query: 597 KKIACKIYNHFHK 609
              A  ++    K
Sbjct: 578 AAAAQLLFEKLKK 590


>gi|323144829|ref|ZP_08079398.1| excinuclease ABC, C subunit [Succinatimonas hippei YIT 12066]
 gi|322415354|gb|EFY06119.1| excinuclease ABC, C subunit [Succinatimonas hippei YIT 12066]
          Length = 649

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 216/620 (34%), Positives = 321/620 (51%), Gaps = 34/620 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PG Y+M D    V+YVGKA +L+KR+  Y      + +   ++S I +I FTV
Sbjct: 47  LKTVPNRPGSYRMYDKNETVIYVGKAKDLKKRLSQYFLKGVDSIKTRALVSHIAHIEFTV 106

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N+IK+ +PR+NILLRDDKS+PYIL+T K K P L+ HR +  I G YF
Sbjct: 107 TFSETEALILENNLIKKYQPRYNILLRDDKSYPYILLT-KDKHPGLFYHRGAKRIVGDYF 165

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS--EKY 180
           GPF    AV++++  LQ+ F +R CAD+V+ HR+RPCL+ Q+ +C  PC        E Y
Sbjct: 166 GPFPDSSAVKESLRLLQKIFPIRQCADTVYAHRSRPCLMAQLGKCLAPCVPMGEKGEESY 225

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V   K FL G N  L   +   M   +    +E A   RD+L AL  +Q       +
Sbjct: 226 AKQVELVKLFLRGQNQELLNNLTVLMQSFSKNLQFEEAAKCRDQLLALRRVQEAQSVSSD 285

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
               +D         LAC+   F   G+  GT +++ K   E +  +++  FL QFY  +
Sbjct: 286 IKFDIDVIGHAVQDGLACVHVLFIRKGRILGTRSYYPKLPREGSLDELMMSFLSQFYLSE 345

Query: 298 P----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                 P+ I++     E  +L+ +  +  G +VK  +  + E+ K +  A  NA  S T
Sbjct: 346 NRSAMFPQEIVIDVAVNEIGVLQNAINQVSGREVKFLINVRAERAKYLTLAKANAKASLT 405

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            K+++ ++ Q  +    K   +     R+E +D SH  G   V   VV    G   ++YR
Sbjct: 406 SKIASSLTAQDRINSLEKILNIK-DIHRMECFDISHTQGELTVASCVVFDREGPDTSRYR 464

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           +FN+    +   DD A M  VL RRF                 +      PD+V +DGG 
Sbjct: 465 RFNIEG--ITPGDDFAAMHQVLTRRFK----------------DPDHSEIPDLVFIDGGP 506

Query: 474 GQLSAAQGVLKKLNVENR---ITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYF 529
           GQL  A+ VL +  +  +     I+++AKG  R  G+E   +    E   L++ DP L  
Sbjct: 507 GQLKQAEEVLTESFLHAKSSLPKIVAVAKGEGRKEGLETLIMGFTHERYHLDLSDPALQL 566

Query: 530 IQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I  +RDE+HRFAIT HR RR KA   S L+ I G+G  R++ LLQ  G  + + R+  + 
Sbjct: 567 ILHIRDESHRFAITGHRGRRSKARRTSALEGIEGVGTKRRQALLQHLGGRQEVMRAGVDE 626

Query: 589 LASIEGISKKIACKIYNHFH 608
           LA + GISK +A KIY+  H
Sbjct: 627 LAKVPGISKALAQKIYDALH 646


>gi|33596393|ref|NP_884036.1| putative excinuclease ABC subunit C [Bordetella parapertussis
           12822]
 gi|33566162|emb|CAE37066.1| putative excinuclease ABC subunit C [Bordetella parapertussis]
          Length = 590

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 211/606 (34%), Positives = 323/606 (53%), Gaps = 28/606 (4%)

Query: 13  YQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLL 72
           Y+ LD AG V+YVGKA +L+KR+ SY   N  + RI  M++++ ++  TVT +E EALLL
Sbjct: 2   YRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTRSEAEALLL 61

Query: 73  EANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVE 132
           E N+IK L+PR+NIL RDDKS+PY+LIT  H  P +  +R +++ +G YFGP+ +  AV 
Sbjct: 62  ENNLIKSLRPRYNILFRDDKSYPYLLIT-GHAWPRIAYYRGATSKRGQYFGPYPNSWAVR 120

Query: 133 KTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLS 192
           +TI  LQ+ F LR+C D+VF +R+RPCLL QI RCS PC G I +  Y   V  A +FL+
Sbjct: 121 ETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAGDYAHDVQRAVRFLN 180

Query: 193 GGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRMDCFSLYH 249
           G    + ++I   M QA+ +  +E A + RD++ +LS + +     +   +  D  ++  
Sbjct: 181 GEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDDTDVIAVAS 240

Query: 250 NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEA 309
                C+       G++ G   FF         AQ+L  F+ Q Y D   P  ++ S   
Sbjct: 241 AGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPPVLVCSHAL 300

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369
            ++ L+ +   +      ++    QG +R  +EQA  NA  +  + L+   +        
Sbjct: 301 PDSGLVGLLAEQGGTRAARVLTRPQGVRRSWLEQAQKNAEMALARALTESGARAGRTLAL 360

Query: 370 TKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            +   L    +     RIE +D SH  G +     VV   +    + YR++N+    +  
Sbjct: 361 AEALDLDTDEESLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYNIVG--ITP 418

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A MR VL RRF ++   E                 P +V++DGGKGQ+  A+ V  
Sbjct: 419 GDDYAAMRQVLTRRFGKVADGE--------------APMPGLVLIDGGKGQVEVARQVFV 464

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAIT 543
           +L ++ + +++ +AKG  R  G+E      G   + L      L  I ++RDEAHRFAIT
Sbjct: 465 ELGLDIQ-SLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRDEAHRFAIT 523

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
             R RR K    S L+EI GIG  R++ LL  FG +  +S +S E LAS+EGIS+++A +
Sbjct: 524 GMRARRAKTRNVSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEGISQELAVR 583

Query: 603 IYNHFH 608
           IY+  H
Sbjct: 584 IYDALH 589


>gi|305680794|ref|ZP_07403601.1| excinuclease ABC, C subunit [Corynebacterium matruchotii ATCC
           14266]
 gi|305658999|gb|EFM48499.1| excinuclease ABC, C subunit [Corynebacterium matruchotii ATCC
           14266]
          Length = 666

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 195/660 (29%), Positives = 309/660 (46%), Gaps = 61/660 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y H       R  HM++  N + +TV 
Sbjct: 11  NVPTDPGVYKFRDPTGRVIYVGKAKNLRARLATYFHDLTQLHPRTRHMVTTANQVEWTVV 70

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IK+  P FN+  RDDK++P + I+    IP  + HR        YFG
Sbjct: 71  GSEVEALQLEYTWIKKYDPHFNVKYRDDKTYPSLAISIGEPIPRAFFHRGPRKAGIRYFG 130

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV +T++ L R F +R+C   V+       RPCLL  I +CS PC G I+   +
Sbjct: 131 PYSHAWAVRETLDLLIRIFPVRTCTKGVYNRHEKLGRPCLLGYIDKCSAPCVGRITETDH 190

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              V +   FL+G    +  K+   M  A  + D+E A   RD LAA+  +      +  
Sbjct: 191 RRIVDDLCAFLAGRTSPITTKLETEMQAAAAELDFERAARIRDNLAAIIALTEQQAIVLP 250

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--NAQILSYFLRQFYT 295
                D  ++  ++  A IQ      G+ +G   + ++   +    + Q++  FL +FY+
Sbjct: 251 DGTDADVIAIDTDELEAAIQLFHIRAGRVKGQRGWVVERTDDHDGGSEQLMQDFLIRFYS 310

Query: 296 DKP--------------------------------CPENILLSEEAEETSLLEISFFKQY 323
           D                                   P +IL+     +    E +  +  
Sbjct: 311 DAADQEQTVRDSEEKAIKRRGVDNYVPIDTTATSVVPHDILVEIPPADIPHTEAALSQLR 370

Query: 324 GYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIP 379
           G  V+I  PK+G+K+ ++     NA  +  Q          +    L++      LP  P
Sbjct: 371 GGPVRIKTPKRGDKKTLMTTVHRNATEALKQHKLKRVGDLTARSAALQELQNSLFLPEAP 430

Query: 380 KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERR 438
            RIE  D SHI G   V  +VV  +    K+ YR++ +         DD A +  V  RR
Sbjct: 431 LRIECTDISHIQGTDVVASLVVFEDGLPKKSDYRRYKITDAAGDGHSDDVASIAEVTRRR 490

Query: 439 F------SQLIKNEENLNFHPKKQEYS--FPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490
           F      S+ +   +   F  +K + S  F   P + I+DGG  Q++AAQ VL +L + +
Sbjct: 491 FLRHHLDSRTVPELDGSQFEDEKPQTSNKFAYSPQLFIVDGGAPQVAAAQQVLDELGITD 550

Query: 491 RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550
            + +I IAK  +     E +   +   L+L      L+ IQ +RDEAHRFAIT HR++R 
Sbjct: 551 -VPVIGIAKRLE-----EIWVAGEKYPLILPRHSQALFLIQHIRDEAHRFAITFHRQQRS 604

Query: 551 -KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            +   S LD I G+G  R+  L++ FG+VK + ++S   + +++G   ++A  +Y+  H 
Sbjct: 605 ARMRRSELDNIKGLGAARRTELVKHFGSVKQLRQASVADITAVKGFGPQLAQNVYDALHP 664


>gi|50954813|ref|YP_062101.1| excinuclease ABC subunit C [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71658762|sp|Q6AF49|UVRC_LEIXX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|50951295|gb|AAT88996.1| excinuclease ABC subunit C [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 656

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 177/654 (27%), Positives = 305/654 (46%), Gaps = 58/654 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            + ++P  PGVY+  D   RVLYVGKA NL+ R+ +Y     +   R   M++   ++ +
Sbjct: 10  KAGEIPTQPGVYRFRDKTRRVLYVGKAKNLRARLSNYFQPLRSLHERTRRMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  +E EAL LE   IK   P FN+  RDDKS+PY+ +T   +IP +   R+       
Sbjct: 70  TVVGSEFEALQLEYTWIKEYNPPFNVQFRDDKSYPYLAVTLGERIPRVLVTRNRIAKGAR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+  V A+  T++ + + F +RSC+D V+R      RPCLL  I +C+GPC G ++ 
Sbjct: 130 YFGPYTKVWAIRDTVDLMLKAFPVRSCSDGVYRRAELTGRPCLLGDIGKCAGPCVGRVTP 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++     +   F++G +      +   M QA    DYE+A  HRD + AL      +  
Sbjct: 190 EEHRRLAEDFVSFMAGDDSKHIRDLTEKMKQAAGTMDYEAAARHRDAIQALEAAMGKSAV 249

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D F + H++  A +Q      G+ RG  ++ +  + +    +++   ++  Y
Sbjct: 250 VLQDNVDLDAFGIGHDELAAAVQQFIVRGGRIRGVRSWVVDKELDVELGELIETVMQNAY 309

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKV-------------------KITVPKQG 335
                P   +L     + +     +     ++                    ++ V ++G
Sbjct: 310 EGADAPPREILVPVLPDDAAELGQWLTGRRHENSGGGVSDPAATRGRLSGRVELKVAQRG 369

Query: 336 EKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM 391
           +K  + + A +NA  +     +   S          D      +   P R+E YD SH+ 
Sbjct: 370 DKAALAQTAEMNAKNALILYKTRRSSDFVARSKAFSDIQDALGMEDAPLRMECYDVSHLS 429

Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN------ 445
             + V  MVV  +    K+QYR+F++  +     DD   +  V+ RR + L K       
Sbjct: 430 RTNIVASMVVFEDGLPRKDQYRRFSIPESA----DDTESIYQVISRRLAYLRKEPPVEAL 485

Query: 446 ------------EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRIT 493
                       +       +++   F   P+++I+DGG+ Q++AA+  L++  V   + 
Sbjct: 486 TPANGHDLATDLDAEAVEAAERRRKKFAYPPNLLIVDGGQPQVAAARRALEESGVSG-VH 544

Query: 494 IISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA 553
           +  IAK  +     E +       ++L      L+ IQR+RDEAHRFAIT  R RRK+  
Sbjct: 545 LAGIAKRLE-----EVWLPGSDFPVILPRNSDALFLIQRIRDEAHRFAITYQRSRRKRDI 599

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + L EI G+GP R + LL+ FG+V  + +++PE +A + G+  ++A  ++   
Sbjct: 600 TTVLGEIPGLGPARVKELLKHFGSVAQLRKAAPEEIAEVRGVGLRLAAAVFERL 653


>gi|148982308|ref|ZP_01816706.1| excinuclease ABC subunit C [Vibrionales bacterium SWAT-3]
 gi|145960542|gb|EDK25901.1| excinuclease ABC subunit C [Vibrionales bacterium SWAT-3]
          Length = 588

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 198/607 (32%), Positives = 321/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA NL+KR+ SY      + +   ++S I+ I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAVVIYVGKAKNLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKKKGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F  R C D+V+ +RTRPCL++QI RC+ PC    IS E+Y E V   + FL G
Sbjct: 120 LHLIQKIFPARQCEDTVYANRTRPCLMYQIGRCAAPCVSSIISDEEYSELVDYVRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            +  + E +   M+ A+ +  +E A   RD++ A+  +Q       +    MD       
Sbjct: 180 KDKLVLETLIEKMDTASRELRFEQAATFRDQIQAIRRVQEQQYVSDDSMEDMDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306
             +ACI       G+  G+ + F K  + +   ++ S FL Q+Y      +  P  ++L+
Sbjct: 240 NGVACIHILMIRQGKVLGSRSHFPKIPNNTVREEVFSSFLSQYYLAHNEARTIPTRLILN 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
            +  E+ + ++ +  +  G K+       G + + ++ +  NA  + T K++ +++    
Sbjct: 300 ADLMEDVTPIQEALCEVAGRKIHFNTNPSGVRGRYLKLSNTNALTAITTKINHKMTINQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K+  +  ++  I  R+E +D SH MG S +   VV  + G VK +YR++N+    +   
Sbjct: 360 FKELQEVLSMDAIK-RMECFDISHTMGESTIASCVVFNQEGPVKPEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M   LERR+S+ +  ++                PD++ +DGGKGQL+ A  ++ +
Sbjct: 417 DDYAAMAQALERRYSKQLDVDK---------------IPDIIFIDGGKGQLNRAHEIISQ 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  ++ IAKG  R  G+E     +GE   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 YWGDWPFRPRMMGIAKGVTRKPGLETLITLEGEEFNLPSDAPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I GIGP R++ LL+  G ++ + R++ E +A + GIS  +A  
Sbjct: 522 GHRAKRGKTRRTSALEGIEGIGPKRRQALLKYMGGLQELKRATVEEIAKVPGISHSLAEN 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|331000291|ref|ZP_08323974.1| excinuclease ABC, C subunit [Parasutterella excrementihominis YIT
           11859]
 gi|329572323|gb|EGG53981.1| excinuclease ABC, C subunit [Parasutterella excrementihominis YIT
           11859]
          Length = 650

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 211/620 (34%), Positives = 334/620 (53%), Gaps = 34/620 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+  D  G +LYVGKA +L++R+ SY        R   M+ QI + + TV
Sbjct: 47  LKNLPHLPGVYRYFDKDGNLLYVGKARDLKRRVSSYFQKT-LAPRTKLMVDQIASAQITV 105

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E EAL+LE+N+IK   PRFNIL RDDKS+PY+ ++     P L  +R +   + SYF
Sbjct: 106 VNSEAEALILESNLIKTQDPRFNILFRDDKSYPYLKLSSGE-YPRLSYYRGALDKRNSYF 164

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +A + T+  LQ+ F LR+C  SVF +R+RPCLL+QI RCSG C  ++S E+Y +
Sbjct: 165 GPYPNANAAKDTMLLLQKVFQLRTCETSVFNNRSRPCLLYQIGRCSGGCCKKVSPEEYGK 224

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V  AK+FL G +  ++E + R MN+ + K D+E A + RD LAA+S++ +         
Sbjct: 225 SVDLAKEFLRGDSQKVQEDLTRRMNEYSQKLDFERAAVMRDHLAAISNVIHQQSMEAAPD 284

Query: 243 ---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL---KTDSESTNAQILSYFLRQFYTD 296
              D  +    +   C+       G++ G    F    +        ++L  F+   YT 
Sbjct: 285 ANADIIAAVAAQGEVCVNLAMVRGGRHLGDKASFPSLGRNAELPELEEVLEAFITHHYTQ 344

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  ++++ E E +  +E       G KV +    Q  +RK +E A+ NA  S  +K+
Sbjct: 345 MDVPPVVIINLE-ERSPRIEELLNTIAGKKVSVIYRPQNIRRKWLELAVTNAKVSLGRKV 403

Query: 357 STEISHQMILKDFTKKFALP-----HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
           + E S +  +    ++  L      +   R+E +D SH  G +     VV   N    +Q
Sbjct: 404 AEEGSQKKRIGALVQELGLDIPESEYEDFRVECFDISHSSGEATQASCVVFAGNRMDSSQ 463

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR+FN+    V   DD A M+ VL RR+ ++   E               + P++V++DG
Sbjct: 464 YRRFNIKD--VTAGDDYAAMKQVLTRRYQRVANGE--------------ATLPNIVLVDG 507

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK--GEALVLNMRDPILYF 529
           G+GQ+  A  V  +L ++  + I+ +AKG  R  G+E+        E L L    P L  
Sbjct: 508 GRGQVKMACEVFDELGLDKNV-IVGVAKGEGRKVGLEELVFPDPNKEPLKLGQESPALML 566

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I ++RDEAHRFAIT  R +R KA  YS ++++ G+G  R++ LL+ FG++K++S +S E 
Sbjct: 567 IAQIRDEAHRFAITGMRAKRAKARNYSRIEDLEGVGSKRRQKLLERFGSLKVLSNASVED 626

Query: 589 LASIEGISKKIACKIYNHFH 608
           +AS++GIS+ +A +IY   H
Sbjct: 627 IASVDGISQTLARQIYAQLH 646


>gi|229525822|ref|ZP_04415227.1| excinuclease ABC subunit C [Vibrio cholerae bv. albensis VL426]
 gi|229339403|gb|EEO04420.1| excinuclease ABC subunit C [Vibrio cholerae bv. albensis VL426]
          Length = 588

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/607 (33%), Positives = 318/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++++LLRDDKS+PYI ++  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYSVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y E VH  + FL G
Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            ++ +   +   M QA+ +  +E A   RD++ A+  +Q       +    +D       
Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306
             +ACI       G+  G+ + F K  S+++  ++   FL Q+Y      +  P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
               EET  L+ +  +  G KV   V   G + + ++ A  NA  + T K++ +++    
Sbjct: 300 RGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKINHKMTISQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K   ++  +  I  R+E +D SH MG S +   VV  + G +K +YR++N+    +   
Sbjct: 360 FKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M  VLERR+S+ +                    PD++ +DGGKGQ + A  ++  
Sbjct: 417 DDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQRNRAYEIISS 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +      II IAKG  R  G+E      G+   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 GHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAEN 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|197334859|ref|YP_002156447.1| excinuclease ABC, C subunit [Vibrio fischeri MJ11]
 gi|197316349|gb|ACH65796.1| excinuclease ABC, C subunit [Vibrio fischeri MJ11]
          Length = 587

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 197/605 (32%), Positives = 312/605 (51%), Gaps = 31/605 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY  SN  + +   ++S I+ +  TVT +E EAL+LE 
Sbjct: 1   MYNAEADVIYVGKAKDLKKRLSSYFRSNVPSEKTKALVSHIHQVDVTVTHSETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI I+ +HK P +  HR     +G YFGP+    AV ++
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFIS-QHKHPRISIHRGVKRKKGEYFGPYPDSGAVRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C DSV+ +R RPCL+ QI RC  PC    +S E+Y E     + FL G
Sbjct: 120 LHLIQKLFPIRQCEDSVYANRHRPCLMHQIGRCLAPCVKGIVSDEEYKEQTDFIRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC---FSLYHN 250
            +  + + +   M+ A+   ++E A I RD++ A+  +Q       +  D          
Sbjct: 180 KDRQVIQTLVEQMDIASQSLNFEKAAIIRDQIQAMRRVQEQQYVSDDSGDDLDVLGFAIE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306
             LAC+       G+  G+ +FF K  + +   ++   FL Q+Y +    +  P  ++ S
Sbjct: 240 NGLACVHLLMIRQGKILGSRSFFPKIPANTDKEEVFLSFLTQYYLNHTQGRTIPNRVVTS 299

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            E    SL            +    PK  + R + + A  NA  + T K + +++     
Sbjct: 300 FEFNSDSLEAALTELSGRKVIFQLNPKGMKGRYL-KLADTNALTALTSKSNHKLTMYQRF 358

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           K   +   L  I  R+E +D SH MG   V   VV  + G VK++YR++N+  + +   D
Sbjct: 359 KQLEEALVLSSIL-RMECFDISHTMGEKTVASCVVFNQEGPVKSEYRRYNI--SGITGGD 415

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A M  VLERR+S+ +  ++                PD++ +DGGKGQL+ A  V+ K 
Sbjct: 416 DYAAMAQVLERRYSKQLDIDK---------------IPDIIFIDGGKGQLNRAYEVISKH 460

Query: 487 --NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
             +   +  ++ IAKG  R  G+E      GE   +    P L+ IQ +RDE+H  AI  
Sbjct: 461 WEDWPKQPLLLGIAKGVTRKHGLETLVKISGEEFSMPSDSPALHLIQHIRDESHNHAIGG 520

Query: 545 HRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR +R K    S L  I+G+GP R++ LLQ  G ++ +  +S E +A + GIS  +A KI
Sbjct: 521 HRAQRAKVRKTSTLQNIDGVGPKRRQALLQYLGGLQELKSASVEEIAKVPGISHSLAEKI 580

Query: 604 YNHFH 608
           ++   
Sbjct: 581 HDALK 585


>gi|321312382|ref|YP_004204669.1| excinuclease ABC subunit C [Bacillus subtilis BSn5]
 gi|320018656|gb|ADV93642.1| excinuclease ABC subunit C [Bacillus subtilis BSn5]
          Length = 590

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 307/613 (50%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDK++P+I +T   + P L   R+    +G YFGP+
Sbjct: 71  NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+    +   R CL + + +C  PC  +IS E   E V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              +FL GG + +K+++   M++A    ++E A   RD++A +           N     
Sbjct: 186 SITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQMAHIESTMEKQKMTMNDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           IL+ +  +++ + ++        +  +  PK+G K++++  A  NA  +     +     
Sbjct: 306 ILVPDSVDQSMIEQLL-------ETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   + + P RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERSIGAVQKLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPYKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR++++++                   PD++I+DGGKGQ++A
Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ V++ +L ++  I I  +AK  K             E + L       Y +QR++DE 
Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLEVVYLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+A+ S LD+I GIG  RK++LL+ FG+VK +  +S E +    G+ 
Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIKKA-GVP 577

Query: 597 KKIACKIYNHFHK 609
              A  +Y+   K
Sbjct: 578 AAAAQLLYDKLQK 590


>gi|295110698|emb|CBL24651.1| excinuclease ABC, C subunit [Ruminococcus obeum A2-162]
          Length = 616

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 192/627 (30%), Positives = 316/627 (50%), Gaps = 36/627 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ N   +I  M++ I    +
Sbjct: 7   ELKKLPAKPGVYLMHDERDEIIYVGKAISLKNRVRQYFQSSRNKGAKIEQMVTHIARFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE+N+IK  +P++N +L+DDKS+P+I +T +   P +   R     +  
Sbjct: 67  IITDSELEALVLESNLIKEHRPKYNTMLKDDKSYPFIKVTVQEAYPRVLFARRMKKDKNR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV+  I  +++ + +RSC  ++ R   + RPCL + +K+C GPCTG     
Sbjct: 127 YFGPYTSGGAVKDVIELVRKLYQVRSCNRNLPRDCGKDRPCLYYHMKQCMGPCTGHADQR 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E + +   FL+G   +  +++A  M +A+ +  +E A   RD + ++  I       
Sbjct: 187 VYKENIRKVLAFLNGDFQDTIDQLAEKMQKASDEMRFEDAAEARDLIRSIQKIGERQKIT 246

Query: 239 Y---NRMDCFSLYH------NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289
                  D  +          +  A +Q  F   G+  G   F+L+     T +Q+LS F
Sbjct: 247 SYGEEDRDIIACDMDESLDLREQDAVVQVFFMRDGRLIGRDHFYLRVARGDTRSQVLSSF 306

Query: 290 LRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
           ++QFY   P  P  I L  E E+  ++E     +   KV+I VPK+G K K++E A  NA
Sbjct: 307 VKQFYAGTPFIPGEITLQTEIEDAEIIEEWLTSRRKQKVRIVVPKKGTKEKLVELAWENA 366

Query: 349 HRS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
                    +    E      + +      +  +  R+E +D S+I G  +VG MVV  +
Sbjct: 367 RMVLEKDRERIRREEGRTIGAVHEVEDWLGMKGLD-RMEAFDISNISGFESVGSMVVYEK 425

Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
               K+ YRKF +    V+  +D A M  VL RRF+               +  SF   P
Sbjct: 426 GKPKKSDYRKFRI--QSVQGPNDYASMEEVLTRRFTH----------ESNGEFDSFAKMP 473

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGG+GQ++ A GVL KL +  +I +  + K          F       + ++   
Sbjct: 474 DLLLMDGGRGQVNIALGVLDKLGI--QIPVCGMVKDDHHRTRGLYF---NNIEIPIDTNS 528

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
                I R++DEAHRFAI  HR  R K   +S LD+I GIG  R++ L++ + +++ I  
Sbjct: 529 EGFRLITRIQDEAHRFAIEYHRSLRSKEQVHSILDDIPGIGERRRKALMRRYRSIEGIRD 588

Query: 584 SSPETLASIEGISKKIACKIYNHFHKN 610
           +S E LA  E ++   A ++Y+ FH N
Sbjct: 589 ASVEELAETESMNMGSAKQVYDFFHPN 615


>gi|254409654|ref|ZP_05023435.1| excinuclease ABC, C subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196183651|gb|EDX78634.1| excinuclease ABC, C subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 675

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 198/662 (29%), Positives = 306/662 (46%), Gaps = 62/662 (9%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61
            +++P  PGVY M D + R+LY+GK+  L+ R++SY  +    + RI  M+ Q+  I F 
Sbjct: 21  LKEIPAEPGVYLMRDGSDRILYIGKSKKLRSRVRSYFRNTQPLSPRIAMMVRQVVEIEFI 80

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STIQG 119
           VT TE E+L LEAN++K+ +P FN+LL+DDK +PYI IT     P ++  R       + 
Sbjct: 81  VTDTEAESLALEANLVKQHQPYFNVLLKDDKKYPYICITWSEDYPRIFITRKRNLRKEKD 140

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+  V  +  T++ L++ F  R     +F  + RPCL + I RC G C   +S ++
Sbjct: 141 RYYGPYVDVGLLRSTLHLLKQIFPQRQRPRPLF--KDRPCLNYDIGRCPGVCQQLVSPQE 198

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + V +      G    L + +++NM QA    ++E A   RD++  L+ +        
Sbjct: 199 YRQMVQKMAMVFQGRTGELIDILSKNMEQAAESLNFELAAKIRDQIKGLNALSADQKVAL 258

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS-ESTNAQILSYFLRQFY 294
                  D  SL  + N ACIQ      G+  G   FF +  S       IL   L   Y
Sbjct: 259 PDDTVSRDAISLAADANHACIQLFQIRAGRLVGRLGFFAEVPSGGIELGAILQRVLEDHY 318

Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                   P  IL+  +  +T LL     ++ G KV I VP++  K ++IE    NA   
Sbjct: 319 QTVDAVEIPSEILVQHQLTDTELLAEWLSERKGRKVTILVPQRQTKAELIEMVERNAKYE 378

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +       +   + D      L  +P RIE YD SHI G + V   VV       K  
Sbjct: 379 LERTQKFADRNSQAMHDLAAILDLSDLPHRIEGYDISHIQGANPVASQVVFINGTPAKQH 438

Query: 412 YRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF--------- 460
           YR + +    V     DD A +  V+ RRF +       L      Q  +          
Sbjct: 439 YRHYKIKNPTVTIGHSDDFASLAEVIRRRFRKYKDVGAGLTDTISPQTDNLTKPALSNHQ 498

Query: 461 --------------------------------PSWPDVVILDGGKGQLSAAQGVLKKLNV 488
                                             +PD++++DGGKGQLSA   VL+ +N+
Sbjct: 499 ENPDVGAGLTDTISPQTHNLTKPALSREQGISNDFPDLIMIDGGKGQLSAVVAVLQDMNL 558

Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
            +++ ++S+AK  +     E F   +   L  +   P +  ++RLRDEAHRFA++ HR++
Sbjct: 559 LDKVRVVSLAKQRE-----EIFLPGESLPLPTDAEQPGVQLLRRLRDEAHRFAVSFHRQQ 613

Query: 549 RKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R      S LDEI G+G  R++ LL  F ++  I  +S + LA + GI  ++A  IY +F
Sbjct: 614 RSNTLRRSRLDEIPGLGFARQKQLLAHFRSIDYIREASVQQLAEVPGIGSRLAEDIYTYF 673

Query: 608 HK 609
           H 
Sbjct: 674 HP 675


>gi|258652974|ref|YP_003202130.1| excinuclease ABCsubunit C [Nakamurella multipartita DSM 44233]
 gi|258556199|gb|ACV79141.1| excinuclease ABC, C subunit [Nakamurella multipartita DSM 44233]
          Length = 679

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 188/658 (28%), Positives = 304/658 (46%), Gaps = 68/658 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA +L++R+ SY         R   M++   ++ +TV 
Sbjct: 13  TIPESPGVYKFRDPKGRVIYVGKAKSLRQRLNSYFADIAALHPRTRQMVTSAGSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDKS+P++ +T   + P L   R +      YFG
Sbjct: 73  STEVEALQLEYNWIKEFDPRFNVRYRDDKSYPFLAVTVGEEYPRLQVMRGAHRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F  R+C+  VFR      RPCLL  I +CS PC G +S++++
Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSAGVFRRSAQIGRPCLLGYIGKCSAPCVGRVSAQEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V     F++G    L  ++ + M  A    D+E A   RD L+A+         ++ 
Sbjct: 193 REIVEGFCDFMAGKADPLIRRLEKQMTAAAADLDFERAARLRDDLSAVRRAVEKQAVVFG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--------STNAQILSYF 289
                D   +  ++ LA +Q      G+ RG   + +  D++             ++  F
Sbjct: 253 DGTDADVIGIAADELLASVQLFHVRDGRVRGERGWIVDVDADVDADGNDRDGLPLLVENF 312

Query: 290 LRQFYTD-----------KPCPENILLSEEAEE----TSLLEISFFKQYGYKVKITVPKQ 334
           L QFY D              P  IL+     +       +        G +V + V ++
Sbjct: 313 LLQFYGDLAADGDAGGPTSSVPREILVPVLPSQDAGTHDEMVDWLSALRGSRVSLRVAQR 372

Query: 335 GEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHI 390
           G+KR + E    NA  + T+          +    L +  +   +   P RIE  D SH+
Sbjct: 373 GDKRALAETVARNAQEALTRHRLKRAGDLTARSAALSELGETLGMDVAPLRIECIDISHV 432

Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN 450
            G   V  +VV  +    ++ YR+F +        DD A +  V+ RRF+   + E    
Sbjct: 433 QGTDVVASLVVFEDGLAKRSDYRRFAIRDK---PGDDVASIAEVVRRRFTHQARAEAGER 489

Query: 451 FHPK------------------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
                                        +   F   P ++++DGG  Q++AA  VL +L
Sbjct: 490 AEADSTPAPTPTPTPAGSGVPAGIDPTTGRVRRFAYPPQLLVVDGGAPQVNAAATVLSEL 549

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
            + + IT+  +AK  +     E +   + + ++       LY +QRLRDEAHRFAIT HR
Sbjct: 550 GIVD-ITVCGLAKRLE-----EVWLPFQADPVIFPRTSEALYLLQRLRDEAHRFAITYHR 603

Query: 547 KRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            +R K+   S LD + G+G +R++ L++ FG+V  + R+  E +  + G+ ++ A  +
Sbjct: 604 AKRSKSMTVSALDNVPGLGEVRRKALVRHFGSVAALRRADVEQILQVPGVGRRTAEAV 661


>gi|328554467|gb|AEB24959.1| excinuclease ABC subunit C [Bacillus amyloliquefaciens TA208]
          Length = 590

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 178/613 (29%), Positives = 305/613 (49%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDK++P+I IT   + P L   R+    +G YFGP+
Sbjct: 71  NLEALILEMNLIKKYDPKYNVMLKDDKTYPFIKIT-HERHPRLIVTRNVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+    +   R CL + + +C  PC  +IS E   E V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           +  +FL GG++ +K+++   M +A  K ++E A   RD+LA +           N     
Sbjct: 186 DITRFLKGGHNEVKKELEEKMTEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMNDLLDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTYIGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           IL+ +  +   + E+        +  +  PK+G K++++  A  NA  +     +     
Sbjct: 306 ILVPDSVDRDMISELL-------ETAVYQPKKGPKKELLLLAHKNAKIALREKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E       +   +   + + P RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERSIGAAERLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPNKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR+S++++                   PD++I+DGGKGQ++A
Sbjct: 418 T--VTGPDDYGSMREVVRRRYSRVLREN--------------LPLPDLIIIDGGKGQINA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L ++  + +  +AK  K             E + L       Y +QR++DE 
Sbjct: 462 ARDVLENELGLD--VPVAGLAKDDKHRTSN-LLIGDPLEPVFLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+A+ S LD+I GIG  RK++LL+ FG+VK +  +S + +    G+ 
Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLDDIKKA-GVP 577

Query: 597 KKIACKIYNHFHK 609
              A  ++    K
Sbjct: 578 AAAAQMLFEKLKK 590


>gi|326335554|ref|ZP_08201741.1| excinuclease ABC subunit C [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692320|gb|EGD34272.1| excinuclease ABC subunit C [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 600

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 182/624 (29%), Positives = 306/624 (49%), Gaps = 50/624 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P+ PGVYQ  D    ++YVGKA NL+KR+ SY +  + + +   ++S+I  I  
Sbjct: 6   LQVQTLPDNPGVYQFFDNTDTIIYVGKAKNLKKRVSSYFNKEHDSPKTRVLVSKIVRIEH 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ +PR+NILL+D KS+P+I I++  + P ++  R      G+
Sbjct: 66  IVVATENDALLLENNLIKKYQPRYNILLKDGKSYPWICISN-ERFPRVFFTRKVYKDGGT 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           Y+GP+ ++  V   ++ ++  + LR+C      +++ + + + CL + IK C GPC G  
Sbjct: 125 YYGPYTNLKIVRTLLDLIKDLYPLRNCRLDLSQENIDKGKYKVCLEYHIKNCKGPCEGLQ 184

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           + E+Y   + + K+ L G    +       M +      +E A   + +L +L + Q+ +
Sbjct: 185 TEEEYNHNIQQIKEILKGNLKEVITYFKEEMLKHAQAFRFEEAQEIKLKLESLENYQSKS 244

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D FS+  ++  A I       G      T  +K   E T+ ++L   + +
Sbjct: 245 TIVSTKIHNVDVFSIVSDEEYAYINFLQVAHGAIVRGHTLEVKKKLEETDQELLELGIVE 304

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                      L+        L E            +T+PK GEK ++++ +  NA    
Sbjct: 305 LRERFKSNSKELIVPFPLSMELSEQ-----------LTIPKAGEKFQLLQLSERNAQAYR 353

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            +K         E     +L    +   L   P  IE +DNS+I G + V   VV     
Sbjct: 354 QEKFKQVKITDPERHTNRLLTQMQRDLHLSEPPAHIECFDNSNIQGTNPVAACVVFKNAK 413

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR FN+    V+  +D A M  V+ RR+ +L+  EE L              P +
Sbjct: 414 PSKKDYRHFNIKT--VEGPNDFASMEEVVYRRYRRLLDEEEPL--------------PQL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +I+DGGKGQLSAA   L+ L++  +I I+ IAK  +     E F+      L L+ +   
Sbjct: 458 IIIDGGKGQLSAALKALELLDLRGKIAIVGIAKRLE-----EIFYPGDSVPLYLDKKSET 512

Query: 527 LYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ LR+EAHRF IT HR++R   A +S L++I+G+G   +  LL+ F +VK +  + 
Sbjct: 513 LKVIQHLRNEAHRFGITFHRQKRSASAIHSELEQISGVGKQTQEALLKHFKSVKRLKEAP 572

Query: 586 PETLASIEGISKKIACKIYNHFHK 609
            E + +  G+S+    K++ +FH 
Sbjct: 573 KEEIIACIGLSRT--QKVWEYFHP 594


>gi|313609172|gb|EFR84852.1| excinuclease ABC subunit C [Listeria monocytogenes FSL F2-208]
          Length = 576

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/595 (29%), Positives = 287/595 (48%), Gaps = 41/595 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M +A    ++E A   RD++ A+           N     
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L ++ +  ++  +          KI VP++G K+ +++ A  NA  +  +K       
Sbjct: 307 IYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ + 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++K                   PD++++DGGKGQ+ +
Sbjct: 420 T--VEGPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDS 463

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++DE 
Sbjct: 464 AKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +  
Sbjct: 521 HRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKE 575


>gi|294501464|ref|YP_003565164.1| excinuclease ABC subunit C [Bacillus megaterium QM B1551]
 gi|294351401|gb|ADE71730.1| excinuclease ABC, C subunit [Bacillus megaterium QM B1551]
          Length = 588

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 181/613 (29%), Positives = 303/613 (49%), Gaps = 45/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   +++ I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKYGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVNDIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI+L+DDK +P+I IT   K P L   R     +G YFGP+
Sbjct: 71  NLEALILEMNLIKKHDPKYNIMLKDDKGYPFIKIT-AEKQPRLVITRKIKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+        RPCL + I +C  PC  E+  E+  + + 
Sbjct: 130 PNVQAANETKRLLDRIYPLRKCSTMP----DRPCLYYHIGQCLAPCVKEVKEEQNKQIIE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
              +FL+GG  ++K ++   M +A+ + D+E A  +RD++A +          +N     
Sbjct: 186 NITRFLNGGYEHVKTELTEKMLKASEELDFERAKEYRDQIAHIEATMEKQKVTFNDFVNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+                  +    F+ QFY     P+ 
Sbjct: 246 DVFGYSYDKGWMCVQVFFIRQGKLIEREVSMF--PFYKEPEEDFLTFIGQFYAKNIKPKE 303

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           +++    +     ++   +       +  PK+G+K++++E A  NA  +           
Sbjct: 304 VMVPATIDAELAEKLVEVE-------VQHPKRGKKKELVELACKNAKIALGEKFYLIERD 356

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   ++  +     RIE +DNS+I G   V  M+V  +    K +YRK+ + 
Sbjct: 357 EERTVGAVERLGEELRIAAP-YRIEAFDNSNIQGTDPVSAMIVFVDGKPEKKEYRKYKIK 415

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD + MR V+ RR+S+ +K                   PD++++DGGKG L+A
Sbjct: 416 T--VQGPDDYSSMREVVRRRYSRALKEG--------------LPLPDLIVVDGGKGHLAA 459

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            Q VL+ +L +   +    + K  K          +  + + L       Y +QR++DE 
Sbjct: 460 VQDVLENELGLL--VPTAGLVKDDKHRTSN-LMIGEPPQIIPLERNSQEFYLLQRIQDEV 516

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K+A+ S LD+I G+G  RK+ LL+ FG+VK +  ++ E + +  G+ 
Sbjct: 517 HRFAITFHRQVRSKSAFQSVLDDIPGVGEKRKKALLKYFGSVKKLKEATVEDIRN-SGVP 575

Query: 597 KKIACKIYNHFHK 609
           + IA KIY    K
Sbjct: 576 QNIAEKIYETLQK 588


>gi|291485280|dbj|BAI86355.1| excinuclease ABC subunit C [Bacillus subtilis subsp. natto BEST195]
          Length = 590

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 307/613 (50%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDK++P+I +T   + P L   R+    +G YFGP+
Sbjct: 71  NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+    +   R CL + + +C  PC  +IS E   E V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              +FL GG + +K+++   M++A    ++E A   RD++A +           N     
Sbjct: 186 SITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQIAHIESTMEKQKMTMNDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           IL+ +  +++ + ++        +  +  PK+G K++++  A  NA  +     +     
Sbjct: 306 ILVPDSVDQSMIEQLL-------ETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   + + P RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERSIGAVQKLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPYKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR++++++                   PD++I+DGGKGQ++A
Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ V++ +L ++  I I  +AK  K             E + L       Y +QR++DE 
Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLEVVYLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+A+ S LD+I GIG  RK++LL+ FG+VK +  +S E +    G+ 
Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIKKA-GVP 577

Query: 597 KKIACKIYNHFHK 609
              A  +Y+   K
Sbjct: 578 AAAAQLLYDKLQK 590


>gi|296331603|ref|ZP_06874072.1| excinuclease ABC subunit C [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675438|ref|YP_003867110.1| excinuclease ABC subunit C [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151198|gb|EFG92078.1| excinuclease ABC subunit C [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305413682|gb|ADM38801.1| excinuclease ABC subunit C [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 590

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 306/613 (49%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDK++P+I +T   + P L   R+    +G YFGP+
Sbjct: 71  NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+    +   R CL + + +C  PC  +IS E   E V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              +FL GG +++K+++   M +A    ++E A   RD++A +           N     
Sbjct: 186 SITRFLKGGYNDVKKELEEKMLEAAENLEFERAKELRDQIAHIESTMEKQKMTMNDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           IL+ +  +++ + ++        +  +  PK+G K++++  A  NA  +     +     
Sbjct: 306 ILVPDSVDQSMIEQLL-------ETNVHQPKKGSKKELLMLAHKNAKIALKEKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    +   + + P RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERSIGAVHKLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPNKREYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR++++++                   PD++I+DGGKGQ++A
Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ V++ +L ++  I I  +AK  K             E + L       Y +QR++DE 
Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLETVYLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+A+ S LD+I GIG  RK++LL+ FG+VK +  +S E +    G+ 
Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIQKA-GVP 577

Query: 597 KKIACKIYNHFHK 609
              A  +Y+   K
Sbjct: 578 AAAAQLLYDKLQK 590


>gi|168181969|ref|ZP_02616633.1| excinuclease ABC, C subunit [Clostridium botulinum Bf]
 gi|237796839|ref|YP_002864391.1| excinuclease ABC subunit C [Clostridium botulinum Ba4 str. 657]
 gi|259710336|sp|C3KV13|UVRC_CLOB6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|182674896|gb|EDT86857.1| excinuclease ABC, C subunit [Clostridium botulinum Bf]
 gi|229262714|gb|ACQ53747.1| excinuclease ABC, C subunit [Clostridium botulinum Ba4 str. 657]
          Length = 618

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 189/619 (30%), Positives = 311/619 (50%), Gaps = 19/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G ++YVGKA  L+ R++ Y   +  H+ ++  M+  I    +
Sbjct: 7   QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T     P +   R  +     
Sbjct: 67  IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVISTRKVTKDGSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    +V+  I  +++TF +R+C  ++       RPCL +QI  C  PC   I   
Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y E + +  K LSG + ++ E    NM +A    ++E A + RD++  +  I       
Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMEKAAGNLEFEKAAMLRDKINIIEKIGEKQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              ++  D  SLY +    C Q  F   G+  G   F ++   ++ ++ ++S FL++FY 
Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +     E+  LLE     +   K  I +P +GEK+ I++    NA       
Sbjct: 307 GTAYIPKTIYVPNIEDEVLLEQWLTLKKESKSTIKIPIKGEKKNILDLVEKNAKTTLENF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  +  +  +LKD      L   P RIE +D S+I G  +VG MVV  +     + 
Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F    N VK  DD   M+ +L RRF   +   +   +   +     F  +PD++++D
Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL   N+   I +  + K  K         +  GE +++N    ++ FI
Sbjct: 485 GGKGQINIALEVLNTFNI--NIPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAI+ HR  R K + +S LD+I  IG  RK+ LL +F ++  I +++ E L
Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599

Query: 590 ASIEGISKKIACKIYNHFH 608
            SI  + KK A  I   F 
Sbjct: 600 LSISSMDKKSAESILEFFK 618


>gi|319763573|ref|YP_004127510.1| excinuclease abc, c subunit [Alicycliphilus denitrificans BC]
 gi|330824226|ref|YP_004387529.1| excinuclease ABC subunit C [Alicycliphilus denitrificans K601]
 gi|317118134|gb|ADV00623.1| excinuclease ABC, C subunit [Alicycliphilus denitrificans BC]
 gi|329309598|gb|AEB84013.1| excinuclease ABC, C subunit [Alicycliphilus denitrificans K601]
          Length = 652

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 211/644 (32%), Positives = 322/644 (50%), Gaps = 48/644 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D  G +LYVGKA NL+KR+ SY    +   RI HM+ +I  +  TV  +
Sbjct: 16  LPPLPGVYRYFDAQGVLLYVGKARNLKKRVSSYFAKQHGGTRIGHMVGKIARLETTVVRS 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRDS 114
           E EALLLE N+IK L P++NIL RDDKS+PY+ IT              + P +  +R S
Sbjct: 76  EAEALLLENNLIKSLGPKYNILFRDDKSYPYLKITGVAEKDGEGDAPGQRYPRIAYYRGS 135

Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
              +  YFGP+    AV++TI  LQ+ F LR+C D+VF +RTRPCLL+QIKRC+ PC G 
Sbjct: 136 VDKRHRYFGPYPGAWAVKETIQLLQKVFRLRTCEDTVFANRTRPCLLYQIKRCTAPCVGL 195

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           IS E Y   V  A+  L G    L +++ R M   + + ++E A   R+++ ALS + + 
Sbjct: 196 ISPEGYAGDVRSAEALLRGETQELLQELERRMLAHSERLEFELAAEVRNQITALSRVLHQ 255

Query: 235 NDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST---------- 281
                     +D  ++      AC+       G++ G   +F     ++           
Sbjct: 256 QAVESVSDKDVDILAVKVAGGRACVNLAMVRGGRHLGDRAYFPVHVEDAAGVFQLEDQEE 315

Query: 282 -----------NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKIT 330
                       AQ+L  F+ Q Y   P P  ++ S   E+  L   +  +Q G +V   
Sbjct: 316 GAGAAQPDCPVEAQVLEAFMAQHYLGVPVPPTLITSLPVEQRLL--EALSEQSGVRVTAV 373

Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH---IPKRIEIYDN 387
              + ++R  +E A  NA     + L+ E S Q   +   +   L         IE +D 
Sbjct: 374 RQPREQRRAWLEMAQQNAEIQLARLLAEEGSQQARTRALAEALDLDAEDLDRFTIECFDI 433

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447
           SH  G +     VV   +    ++YR+F    + +   DD A MR VL RR+S++ + + 
Sbjct: 434 SHTAGEATQASCVVFHHHKMQGSEYRRF--KIDGITGGDDYAAMRQVLTRRYSKVAEAQR 491

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
                    + +    PD+V++DGGKGQ+S A+ V  +L ++    I+ + KG  R  G+
Sbjct: 492 EAGGAEVSDKRA--RLPDLVLVDGGKGQVSMAREVFTELGLDVS-RIVGVEKGEGRKVGL 548

Query: 508 EKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIG 564
           E+     G   + L      L  + ++RDEAHRFAIT  R  R +A    S L++I G+G
Sbjct: 549 EELVFADGREKVYLGRDSAALMLVAQIRDEAHRFAITGMRAARARARTGGSRLEDIPGVG 608

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           P ++  LLQ FG V+ ++ +S E LA++EGIS  +A +IY    
Sbjct: 609 PKKRARLLQRFGGVRGVADASVEDLATVEGISHGLAEEIYRALR 652


>gi|189347284|ref|YP_001943813.1| excinuclease ABC subunit C [Chlorobium limicola DSM 245]
 gi|189341431|gb|ACD90834.1| excinuclease ABC, C subunit [Chlorobium limicola DSM 245]
          Length = 619

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 184/631 (29%), Positives = 289/631 (45%), Gaps = 52/631 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
            +P  PGVYQ  + +G+V+YVGKA NL+ R++SY   +   + +   M+  I ++   +T
Sbjct: 15  TLPTSPGVYQFRNASGKVIYVGKAKNLRNRVRSYFRDSRQLYGKTLVMVGHIADLEVIIT 74

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL+LE N+IK LKPR+N+ L+DDK++PY++IT+    P ++  R        +FG
Sbjct: 75  SSEVEALILENNLIKELKPRYNVNLKDDKTYPYLVITN-EPFPRIFLTRYIKRDGSIWFG 133

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSE 178
           P+     +   ++ +   F LRSC            + R CL + I +C GPC G  S  
Sbjct: 134 PYTEARQLRLILDLIGSIFPLRSCKHRFTAESIASGKFRVCLDYHIHKCKGPCEGFQSEA 193

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + + E  + L G    L   +   M++   +  +E+A   R +L +L         +
Sbjct: 194 DYRQMIEEVVRLLKGRTSGLIRSLTEKMHEHAAELKFEAAAEIRSQLDSLKRYAERQKVV 253

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L   ++ AC        G+  G+   ++      T   +L+     +Y 
Sbjct: 254 SPDGADRDVIALAAGEDDACAVIFKIREGKLLGSQRIYMNNTGGETETVLLAKAAENYYL 313

Query: 296 D--KPCPENILLSE--------EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
           +     P+ ILL            +     +          ++I VP+ GEK  +++   
Sbjct: 314 ETIDTIPDEILLQHTLVAENEETLKSFVAAKKLAEPGRKTAIRIVVPQIGEKAHLLDMCH 373

Query: 346 INAHRSHTQKLSTEISH------QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
            NA     + L  +            L D  +   L   P+RIE +DNSH  G   V  M
Sbjct: 374 RNARHHLEEYLIQKQKRGEAAREHAGLNDLQELLHLEKPPERIECFDNSHFQGTDYVSSM 433

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           V        K++YRKF L    ++  DD A M  VL RR++  +  E             
Sbjct: 434 VCFVHGKPKKSEYRKFRLRT--IEGSDDYAAMEEVLNRRYTGSLAEE------------- 478

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519
              +PD++++DGGKGQ++ A  +L +  +   I +I +AK  +     E F     +   
Sbjct: 479 -LPFPDLIVVDGGKGQVNIAHRILAESGL--NIPVIGLAKRLE-----EIFLPHVSDPFN 530

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578
           L    P L  +Q+LRDEAHRFA+T HRK R  +   + L  I GIG      LLQ FG+V
Sbjct: 531 LPKTSPALRMLQQLRDEAHRFAVTYHRKLRSERTLQTELTAIAGIGEKTAHKLLQHFGSV 590

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHK 609
           K IS +S E L S  G  +  A KI+  +H 
Sbjct: 591 KRISEASLEDLVSAAG--RNTAEKIHRVYHP 619


>gi|171058615|ref|YP_001790964.1| excinuclease ABC subunit C [Leptothrix cholodnii SP-6]
 gi|170776060|gb|ACB34199.1| excinuclease ABC, C subunit [Leptothrix cholodnii SP-6]
          Length = 692

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 210/654 (32%), Positives = 319/654 (48%), Gaps = 66/654 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+  D   ++LYVGKA +L+KR+ SY H ++   RI HM+ +I+ I  TV  
Sbjct: 55  SLPSLPGVYRYFDAGNQLLYVGKALSLKKRVSSYFHKDHGGSRIGHMVGKIHRIETTVVR 114

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK   PRFNIL RDDKS+PY+ +   H+ P +   R +   +  YFGP
Sbjct: 115 SEAEALLLENNLIKTQNPRFNILFRDDKSYPYLKL-VTHEYPRVAYFRGAVDRRHRYFGP 173

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  AV++ I  LQ+ F LR+C D+VF +RTRPCLL+QI+RCSGPC   IS+E Y   V
Sbjct: 174 YPSAWAVKEGIQLLQKVFRLRTCEDTVFANRTRPCLLYQIRRCSGPCVQAISAEAYAADV 233

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    + + +   M  A     +E A   RD+L ALS + +           
Sbjct: 234 RNAVRFLDGQAQEVLDGLQTQMMVAAEALAFEKAAEIRDQLGALSKVLHQQSMETGEAGD 293

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE---------------------- 279
           +D  ++      AC+       G++ G   +F     +                      
Sbjct: 294 VDILAVKVQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAVALAHEEESAEPEAGTPSTPE 353

Query: 280 ---------------STNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYG 324
                               +L  FL Q Y    CP  ++ S   +   +  ++     G
Sbjct: 354 PAPAASDAAVGSSLGQAERAVLQAFLAQHYLGADCPPLLITSLPVDRDLIAALAG--NAG 411

Query: 325 YKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---- 380
           +KV      + ++R  ++ A+     +  + L+ E S Q   +   +   L         
Sbjct: 412 HKVVAQHQPREDRRAWLDMAIKGCELALARLLAEEGSQQARTRALVEALDLAPEGMDGGL 471

Query: 381 ---RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLER 437
              RIE +D SH  G +     VV   +     QYR+FN+    ++  DD A MR VL R
Sbjct: 472 DSLRIECFDVSHTQGEATQASCVVFENHRMQPAQYRRFNI--AGIQGGDDYAAMRQVLTR 529

Query: 438 RFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI 497
           R+S+L +  +                PD+V++DGG+GQ+  A+ V ++L ++  + I+ +
Sbjct: 530 RYSKLAEAAQ----------SGEGRLPDLVLIDGGRGQVGVAKEVFQQLGLDLAL-IVGV 578

Query: 498 AKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-- 554
            KG  R  G+E+     G   + L      L  + ++RDEAHRFAIT  R RR       
Sbjct: 579 EKGEGRKVGLEELVFADGREKVYLGRDSAALMLVAQIRDEAHRFAITGMRARRASVRTGG 638

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           S L++I GIGP ++  LLQ FG V+ ++++S E LAS+EGIS ++A +IY    
Sbjct: 639 SRLEDIAGIGPKKRARLLQRFGGVRGVAQASVEDLASVEGISPELAEQIYQALR 692


>gi|156975021|ref|YP_001445928.1| excinuclease ABC subunit C [Vibrio harveyi ATCC BAA-1116]
 gi|156526615|gb|ABU71701.1| hypothetical protein VIBHAR_02747 [Vibrio harveyi ATCC BAA-1116]
          Length = 588

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 200/607 (32%), Positives = 315/607 (51%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M ++   V+YVGKA +L+KR+ SY      + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNVEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTRALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193
           ++ LQ+T  +R C D+V+ +RTRPCL++QI RC+GPC    IS E+Y E V   + FL G
Sbjct: 120 LHLLQKTLPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSTIISDEEYAELVGFVRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHN 250
            +  + E++   M  A+ +  +E A   RD++ A+  +Q       + MD          
Sbjct: 180 KDKQVLEQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306
             +ACI       G+  G+ + F K    ++  ++   FL Q+Y         P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIILN 299

Query: 307 EEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           +E       ++ +  +  G KV+      G + + ++ +  NA  + T K++ +++    
Sbjct: 300 QELGGDIEPIQQALSEVAGRKVQFHTSPTGSRGRYLKLSNTNALTAITTKINHKMTINQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K   +   +  I  R+E +D SH MG S +   VV    G VK +YR++N+    +   
Sbjct: 360 FKALREVLGMETIA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M   LERR+S+ +  E+                PD++ +DGGKGQL+ A  ++ +
Sbjct: 417 DDYAAMGQALERRYSKQLDVEK---------------IPDIIFIDGGKGQLNRAHEIISQ 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  +I IAKG  R  G+E       E   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 YWGDWPKRPIMIGIAKGVTRKPGLETLITVDAEEFNLPSDAPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  
Sbjct: 522 RHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEI 581

Query: 603 IYNHFHK 609
           I+    +
Sbjct: 582 IFQALKQ 588


>gi|210635499|ref|ZP_03298580.1| hypothetical protein COLSTE_02519 [Collinsella stercoris DSM 13279]
 gi|210158354|gb|EEA89325.1| hypothetical protein COLSTE_02519 [Collinsella stercoris DSM 13279]
          Length = 677

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 175/639 (27%), Positives = 307/639 (48%), Gaps = 49/639 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PG Y   D  G V+YVGKA NL+ R++ Y+   +   +I  M+  + +  + V  
Sbjct: 51  KVPTDPGCYLWKDAEGGVIYVGKAKNLRARLRQYVTLTDDRAKIPLMMQLVASFDYIVVG 110

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LE  +I +  P FN+  +DDKS+PYI IT     PA+   R+       YFGP
Sbjct: 111 TEHEALVLERELIAQYHPYFNVDYKDDKSYPYIAITKGDVFPAIKYTREKHRPDTRYFGP 170

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH---------------------RTRPCLLFQ 163
           +    A  +TI++L++   + + + + ++                      + RPC  + 
Sbjct: 171 YTDSRAARETIDTLRKVCPVCTASCAEWKRVRRLLEKRPDEADIIELICASQGRPCFDYH 230

Query: 164 IKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223
           + R  G C G I  ++Y + V   ++FLSG    L +++  +M  A    D+E A   + 
Sbjct: 231 VGRGPGVCAGMIGRDEYAKNVKRVERFLSGQRRELVDELKSDMAAAAADLDFERAGRIKR 290

Query: 224 RLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280
           RL+ +  + +    ++      D    Y  + +A         G+ + TC F L    + 
Sbjct: 291 RLSVIDGLDDRQQVVFPTSVDLDLVGFYREETIAGACVFVVREGRVQRTCEFILDKGFDV 350

Query: 281 TNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339
              +++S F++++Y +    P  + ++ +  +  ++      + G   ++  P++GEKR+
Sbjct: 351 DEVELVSGFVKRYYDETADIPAEVNVAVDIPDAEVMGEWLTAKRGRVCRLHRPQRGEKRR 410

Query: 340 IIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395
           ++E A  NA  +  + +      +      L       AL   P RIE +D S + G   
Sbjct: 411 LLEMAQKNARHALMRYMMRTGYSDDRTNQALLQLESALALDAPPMRIECFDISTLHGAFT 470

Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455
           V  MVV       K+QYR+F +    +   +D   M  VL RR+              + 
Sbjct: 471 VASMVVFTNGKPDKSQYRRFKIRAE-LDEANDFVSMSEVLGRRY-----------APERM 518

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
            +  F S PD++++DGG+ QL+AA   L++L ++  I +  +AK  +     E F     
Sbjct: 519 ADERFGSRPDLLVVDGGRPQLTAAIRQLEELGLD--IPVCGLAKADE-----EVFVPWDD 571

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQS 574
             +VL      LY I+++RDE+HRFAIT HR+ R KA   S LDE+ G+GP RK+ +++ 
Sbjct: 572 TPIVLPSGSASLYLIKQVRDESHRFAITFHRELRGKAMTVSILDEVAGVGPTRKKAIMRH 631

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           FG++K +  +S E +AS++G+   +A  +Y+      + 
Sbjct: 632 FGSMKRLREASAEEIASVKGVPADVARAVYDSLRALDAE 670


>gi|254430840|ref|ZP_05044543.1| excinuclease ABC, C subunit [Cyanobium sp. PCC 7001]
 gi|197625293|gb|EDY37852.1| excinuclease ABC, C subunit [Cyanobium sp. PCC 7001]
          Length = 667

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 189/636 (29%), Positives = 310/636 (48%), Gaps = 34/636 (5%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN---HTHRITHMISQINNIRFTVT 63
           P  PG Y M D A R+LY+GKA  L+ R++SY  S     H+ RI  M+ Q+ ++ F VT
Sbjct: 21  PTEPGCYLMRDAADRILYIGKAKVLRNRVRSYFQSGRGHGHSPRIALMVRQVCDLEFIVT 80

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--GSY 121
            +E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R          +
Sbjct: 81  DSEAEALALESNLIKHHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRQRRFRSPLDRF 140

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+  V  + +T+  ++R F LR     ++R RT  CL + I RC G C  +ISSE Y 
Sbjct: 141 YGPYVDVGLLRRTLAVVKRVFPLRQRPQPLYRDRT--CLNYDIGRCPGVCQQKISSEDYH 198

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             + +      G N  L E +   M++   + D+ESA   RD+L  +  +          
Sbjct: 199 RTLRQVAMVFQGRNEELLELLRAQMDRYAERLDFESAARVRDQLQGIGTLTADQKMSTGD 258

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI----LSYFLRQF 293
                D  +L  ++ LA +Q      G+  G   +  +  + + + Q     L   + + 
Sbjct: 259 SSVSRDVIALASDERLASVQLFQMRAGKLVGRLGYMAEVPATAPDQQDLGPILQRVVEEH 318

Query: 294 YTD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           Y+       P  +LL     +  L+E    ++ G KV++ VP++ +K ++IE  + NA  
Sbjct: 319 YSQVEPVEIPPELLLQHPLPQQDLIEAWLSERRGRKVRLAVPQRQQKAEMIELVVRNASY 378

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +       + +  +D  +   LP  P+RIE YD SHI G  AV   VV  +    K 
Sbjct: 379 ELQRAQRASEQNLLATEDLAQLLELPVPPRRIEGYDISHIQGSDAVASQVVFVDGLPAKQ 438

Query: 411 QYRKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP------- 461
            YRK+ +  + ++     D   M  ++ RRF +  + +       + +  +         
Sbjct: 439 HYRKYRIQSSSIRAGHSDDFMAMAEIMRRRFRRWAQAKAAGADLRELRRAAGSALHTEGL 498

Query: 462 -SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
             WPDVV++DGGKGQLSA    L++L++   + + S+AK  +     E F     + L  
Sbjct: 499 NDWPDVVMIDGGKGQLSAVMEALRELDLHEELVVCSLAKQRE-----EVFVPGARQPLES 553

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
                 +  ++RLRDEAHRFA++ HR++R  +   S L +I G+GP R + LL  F ++ 
Sbjct: 554 EAEQLGVQLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGPKRVKDLLAHFRSID 613

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
            I  +SP  +A   G+   +A +++++FH      P
Sbjct: 614 AIQLASPAQIAEAPGVGPALARQVWDYFHPAQELEP 649


>gi|295706812|ref|YP_003599887.1| excinuclease ABC, C subunit [Bacillus megaterium DSM 319]
 gi|294804471|gb|ADF41537.1| excinuclease ABC, C subunit [Bacillus megaterium DSM 319]
          Length = 588

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 181/613 (29%), Positives = 303/613 (49%), Gaps = 45/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   +++ I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKYGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVNDIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI+L+DDK +P+I IT   K P L   R     +G YFGP+
Sbjct: 71  NLEALILEMNLIKKHDPKYNIMLKDDKGYPFIKIT-AEKQPRLVITRKIKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+        RPCL + I +C  PC  E+  E+  + + 
Sbjct: 130 PNVQAANETKRLLDRIYPLRKCSTMP----DRPCLYYHIGQCLAPCVKEVKEEQNKQIIE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
              +FL+GG  ++K ++   M +A+ + D+E A  +RD++A +          +N     
Sbjct: 186 NITRFLNGGYEHVKTELTEKMLKASEELDFERAKEYRDQIAHIEATMEKQKVTFNDFVNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+                  +    F+ QFY     P+ 
Sbjct: 246 DVFGYSYDKGWMCVQVFFIRQGKLIEREVSMF--PFYKEPEEDFLTFIGQFYAKNIKPKE 303

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           +++    +     ++   +       +  PK+G+K++++E A  NA  +           
Sbjct: 304 VMVPATIDAELAEKLVEVE-------VQHPKRGKKKELVELACKNAKIALGEKFYLIERD 356

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   ++  +     RIE +DNS+I G   V  M+V  +    K +YRK+ + 
Sbjct: 357 EERTVGAVERLGEELGIAAP-YRIEAFDNSNIQGTDPVSAMIVFVDGKPEKKEYRKYKIK 415

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD + MR V+ RR+S+ +K                   PD++++DGGKG L+A
Sbjct: 416 T--VKGPDDYSSMREVVRRRYSRALKEG--------------LPLPDLIVVDGGKGHLAA 459

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            Q VL+ +L +   +    + K  K          +  + + L       Y +QR++DE 
Sbjct: 460 VQDVLENELGLL--VPTAGLVKDDKHRTSN-LMIGEPPQIIPLERNSQEFYLLQRIQDEV 516

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K+A+ S LD+I G+G  RK+ LL+ FG+VK +  ++ + + +  G+ 
Sbjct: 517 HRFAITFHRQVRSKSAFQSVLDDIPGVGEKRKKALLKYFGSVKKLKEATVDDIRN-SGVP 575

Query: 597 KKIACKIYNHFHK 609
           + IA KIY    K
Sbjct: 576 QNIAEKIYETLQK 588


>gi|311069340|ref|YP_003974263.1| excinuclease ABC subunit C [Bacillus atrophaeus 1942]
 gi|310869857|gb|ADP33332.1| excinuclease ABC subunit C [Bacillus atrophaeus 1942]
          Length = 590

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 308/613 (50%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    ++YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQQTIIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI+L+DDK++P+I IT   + P L   R+    +G YFGP+
Sbjct: 71  NLEALILEMNLIKKHDPKYNIMLKDDKTYPFIKIT-HERHPRLIVTRNVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+    +   R CL + + +C  PC  +IS E   + V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRQLVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  +FL GG + +K+++   M++A    ++E A   RD++A +           N     
Sbjct: 186 EITRFLKGGYNQVKKELEGKMHEAAENLEFERAKELRDQMAHIESTMEKQKMTMNDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           IL+ +  ++T + ++        +  +  PK+G K++++  A  NA  +     +     
Sbjct: 306 ILVPDSVDQTMIEQLL-------ETSVHQPKKGAKKELLMLAHKNAKIALKEKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   + + P RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERSIGAVQRLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPNKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR+S++++                   PD++I+DGGKGQ++A
Sbjct: 418 T--VTGPDDYGSMREVVRRRYSRVLREN--------------LPLPDLIIIDGGKGQINA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L ++  + I  +AK  K             EA+ L       Y +QR++DE 
Sbjct: 462 AKDVLENELGLD--VPIAGLAKDDKHRTSN-LLIGDPLEAIYLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+A+ S LD+I GIG  RK+ LL+ FG+VK +  +S E +    G+ 
Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKSLLKHFGSVKKMKEASLEDIQKA-GVP 577

Query: 597 KKIACKIYNHFHK 609
              A  +Y+   K
Sbjct: 578 SAAAQLLYDKLKK 590


>gi|168178938|ref|ZP_02613602.1| excinuclease ABC, C subunit [Clostridium botulinum NCTC 2916]
 gi|226950830|ref|YP_002805921.1| excinuclease ABC subunit C [Clostridium botulinum A2 str. Kyoto]
 gi|254764927|sp|C1FMJ8|UVRC_CLOBJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|182670244|gb|EDT82220.1| excinuclease ABC, C subunit [Clostridium botulinum NCTC 2916]
 gi|226844595|gb|ACO87261.1| excinuclease ABC, C subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 618

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 188/619 (30%), Positives = 312/619 (50%), Gaps = 19/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G ++YVGKA  L+ R++ Y   +  H+ ++  M+  I    +
Sbjct: 7   QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T     P +   R  +     
Sbjct: 67  IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVTKDGSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    +V+  I  +++TF +R+C  ++       RPCL +QI  C  PC   I   
Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y E + +  K LSG + ++ E    NM +A    ++E A + RD++  +  I       
Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              ++  D  SLY +    C Q  F   G+  G   F ++   ++ ++ ++S FL++FY 
Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +     E+ +LLE     +   K  I +P +GEK+ I+     NA       
Sbjct: 307 GTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  +  +  +LKD      L   P RIE +D S+I G  +VG MVV  +     + 
Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F    N VK  DD   M+ +L RRF   +   +   +   +     F  +PD++++D
Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL   N++  I +  + K  K         +  GE +++N    ++ FI
Sbjct: 485 GGKGQINIALEVLNTFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAI+ HR  R K + +S LD+I  IG  RK+ LL +F ++  I +++ E L
Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599

Query: 590 ASIEGISKKIACKIYNHFH 608
            SI  + KK A  +   F 
Sbjct: 600 LSIPSMDKKSAECVLEFFK 618


>gi|262374006|ref|ZP_06067283.1| excinuclease ABC, C subunit [Acinetobacter junii SH205]
 gi|262311017|gb|EEY92104.1| excinuclease ABC, C subunit [Acinetobacter junii SH205]
          Length = 599

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 189/605 (31%), Positives = 304/605 (50%), Gaps = 30/605 (4%)

Query: 10  PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69
           PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   +  +E EA
Sbjct: 20  PGVYKMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLIVRSETEA 79

Query: 70  LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASV 128
           LLLE N+IK  +P +NI+LRDDKS+ YI ++     P +   R     Q G +FGP+ S 
Sbjct: 80  LLLEQNLIKLHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFGPYPSA 139

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +   T+ +LQ+ F +R C +S F  R RPCL +QIKRC+ PC G IS E Y E V  + 
Sbjct: 140 YSARDTLLTLQKLFNVRQCENSYFSQRKRPCLQYQIKRCTAPCVGLISPEDYKEDVDNSI 199

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
           +FL G    L +++   M QA    ++E A+ +RDRL+ L  +Q            D  +
Sbjct: 200 RFLQGDTKELNQELIGKMEQAAEALEFEKAVFYRDRLSLLREVQAQQAVFKIKGEADILA 259

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCPENILL 305
           + +   + C+Q  +   G+  G  ++F     +     +  +    ++      P  +++
Sbjct: 260 IAYQAGVTCVQIMYVRNGRMLGGKSYFPDMLGDDLGQMLSDFIANFYFQVADEIPSELIV 319

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           + E  +   LE +  + +  KV+I    +  + +  E A +N   +   KLS  +     
Sbjct: 320 NVELPDRVQLEEALQQTFEKKVQIKHKVRETRAEWQELAQMNVQHAIKGKLSNHLELNER 379

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
                +    P     IE +D SH MG + +   VV  + G  K  YR+F +    +   
Sbjct: 380 FHQLEQVAGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD--ITGG 435

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A MR  L RR+ + +                    PD++++DGGKGQL  A  V+++
Sbjct: 436 DDYAAMRQALIRRYKKNM-------------------LPDLLLIDGGKGQLHMAMDVMQE 476

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L ++    +I ++KG  R  G+E      G  + L      L+ IQ++RDEAHRFAIT H
Sbjct: 477 LGLDAF--MIGVSKGEGRKPGLETLHFTDGTKIQLPEDHKALHLIQQVRDEAHRFAITKH 534

Query: 546 RKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R K+ + S L+ I G+GP R+R LL  FG ++ + ++S + L  + G+ + +A  IY
Sbjct: 535 RAKRDKRRSSSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELMLVPGLGEVMARTIY 594

Query: 605 NHFHK 609
              H+
Sbjct: 595 KILHE 599


>gi|219856488|ref|YP_002473610.1| hypothetical protein CKR_3145 [Clostridium kluyveri NBRC 12016]
 gi|219570212|dbj|BAH08196.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 625

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 194/619 (31%), Positives = 322/619 (52%), Gaps = 19/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   + NH+ ++  M+  I+   +
Sbjct: 10  QLKILPDKPGVYLMKNSLGEVIYVGKAKILKNRVRQYFQKSKNHSEKVRTMVKHISEFEY 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+ +PR+NILL+DDK +P I IT     P +   R+       
Sbjct: 70  IVTDSEMEALVLECNLIKKYRPRYNILLKDDKIYPLIKITLNEDFPRIICARNKIKDGAK 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV +T+  +++ F +R C  ++ +   + RPCL + I  C  PCTG IS E
Sbjct: 130 YFGPYISTGAVYETMEVIKKIFPIRDCKLNIKKGNVKVRPCLNYHIGLCKAPCTGHISKE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + +     FLSG N ++  K+  +M+  +   ++E A   RD++ AL  I       
Sbjct: 190 EYGKIISGVMDFLSGKNKDIIRKLKEDMDTLSENMEFEKAAELRDKIFALEKIIEKQKIT 249

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +++ ++  +CIQ  F   G+  G   F ++   +    +I++ F+++FY 
Sbjct: 250 TGGFEDEDFINIHSDEKDSCIQVFFSRTGKIIGREHFIIEDTQDLPKGEIVANFIKEFYG 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +   E  +  LLE     +   KV I +P++G+K+ I+     NA       
Sbjct: 310 GTAYIAKTIYVPEIYDVQLLEDWLSIKKDSKVYIKIPQKGDKKAILNLVEKNARTTLQNF 369

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + +  +  ++  L++  +   L  IP RIE YD S+I G  +VG MVV        N 
Sbjct: 370 KLKFIQDKKMYETSLEELMEILNLDDIPHRIEAYDVSNIQGVDSVGTMVVFENGRPKHND 429

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILD 470
           YR+F    N+VK  +D   M+ +L RRF   ++  + +     +     F  +PD++++D
Sbjct: 430 YRRF--KINEVKGANDYESMKEILRRRFQNGMEEIKRIKERKLEFSAGKFSFFPDLILMD 487

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+SAA  VLK+ N++  IT+  + K  K         + + E + LN    I+  I
Sbjct: 488 GGKIQVSAALEVLKEFNID--ITVCGMVKDDKHRTRG---LIYRNEEMPLNRNSNIIKLI 542

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFA+T HR  R K   +S L++I  +G  R++ LL+ F +V+ I ++S E L
Sbjct: 543 TRIQDEVHRFAVTYHRSLRSKRVLHSVLEDIPNVGVKRRKELLKRFLSVENIKKASMEEL 602

Query: 590 ASIEGISKKIACKIYNHFH 608
            S   I  + A  I ++F 
Sbjct: 603 ISTPSIDMRTAESIISYFR 621


>gi|258593702|emb|CBE70043.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [NC10 bacterium 'Dutch sediment']
          Length = 601

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 193/611 (31%), Positives = 307/611 (50%), Gaps = 34/611 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR---ITHMISQINNI 58
             + + + PGVY   D  G VLY+GKA +L+KR+ SY      T     I  M+ QI ++
Sbjct: 11  KVKGLADAPGVYLFRDARGHVLYIGKALSLRKRVGSYFTEAPDTPERPLIRPMVEQIADL 70

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            F +T  E+EAL+LE+N+IK  KPR+NI L+DDK +P++ +      P +   R      
Sbjct: 71  EFILTDNELEALILESNLIKSHKPRYNIALKDDKHYPFLKLDLNDPFPWVQVVRRIKDDG 130

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             Y+GP+    A+   +  + +T  LR C         R CL + + RC GPC G IS +
Sbjct: 131 ALYYGPYVPTTAMWDVLALVNKTIPLRKCRSI---KGRRLCLEYHLGRCLGPCEGLISQQ 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E V +A+  L G +  L +++   M QA    +YE A  HRD++A+L  +      I
Sbjct: 188 AYGELVDQARLLLDGKDQELMKRLEAQMQQAAETLEYERAAKHRDQIASLRQVFERQRII 247

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D F L      A +Q      G+  G  TF  +  +E+ +  + +   + +  
Sbjct: 248 SPRGEDQDVFGLAAEGGEAQVQLFLIRRGRLIGRETFTFELKTETMSELLSAVLKQFYLG 307

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILLSE  E+  L+      +   +V + VP++G K ++I+ AL NA  +    
Sbjct: 308 ARDIPREILLSEPLEDAPLIAAWLTSRANRRVNLLVPRRGRKMRLIQMALRNAQEALALS 367

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L +  S +  LK+      LP  P+RIE YD S++ G  AVG  VV  +    K+ YR++
Sbjct: 368 LRSSQSREAALKELQTVLDLPAPPRRIEAYDISNLSGALAVGSQVVWEDGKPKKSAYRRY 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    V+  DD AM+  V++RR  +  +                   PD+++LDGG+GQ
Sbjct: 428 KIKT--VEGPDDFAMLAEVVQRRLRKAEE----------------MPLPDLMLLDGGRGQ 469

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           L+AA GV ++L +   + ++S+AK  +       F   +   + L  R      +Q++RD
Sbjct: 470 LNAALGVARELGLH-ALPMVSLAKEEEL-----VFHPSRSTPIALPERSRARQLLQQIRD 523

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+HRFAIT HR  R K+   S LD++ GIG  R+R LL   G+++ +  +S + L    G
Sbjct: 524 ESHRFAITYHRALRGKSAIRSLLDDVPGIGAKRRRALLTQLGSLRRLREASIDELRRAGG 583

Query: 595 ISKKIACKIYN 605
           IS+ +A  I++
Sbjct: 584 ISESLATTIHD 594


>gi|170756327|ref|YP_001783017.1| excinuclease ABC subunit C [Clostridium botulinum B1 str. Okra]
 gi|229558019|sp|B1IFW6|UVRC_CLOBK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|169121539|gb|ACA45375.1| excinuclease ABC, C subunit [Clostridium botulinum B1 str. Okra]
          Length = 618

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 188/619 (30%), Positives = 312/619 (50%), Gaps = 19/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G ++YVGKA  L+ R++ Y   +  H+ ++  M+  I    +
Sbjct: 7   QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T     P +   R  +     
Sbjct: 67  IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVTKDGSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    +V+  I  +++TF +R+C  ++       RPCL +QI  C  PC   I   
Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y E + +  K LSG + ++ E    NM +A    ++E A + RD++  +  I       
Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              ++  D  SLY +    C Q  F   G+  G   F ++   ++ ++ ++S FL++FY 
Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +     E+ +LLE     +   K  I +P +GEK+ I+     NA       
Sbjct: 307 GTAYIPKTIYVPSIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  +  +  +LKD      L   P RIE +D S+I G  +VG MVV  +     + 
Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F    N VK  DD   M+ +L RRF   +   +   +   +     F  +PD++++D
Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL   N++  I +  + K  K         +  GE +++N    ++ FI
Sbjct: 485 GGKGQINIALEVLNTFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAI+ HR  R K + +S LD+I  IG  RK+ LL +F ++  I +++ E L
Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599

Query: 590 ASIEGISKKIACKIYNHFH 608
            SI  + KK A  +   F 
Sbjct: 600 LSIPSMDKKSAECVLEFFK 618


>gi|153938122|ref|YP_001392736.1| excinuclease ABC subunit C [Clostridium botulinum F str. Langeland]
 gi|189038038|sp|A7GIX6|UVRC_CLOBL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|152934018|gb|ABS39516.1| excinuclease ABC, C subunit [Clostridium botulinum F str.
           Langeland]
 gi|295320717|gb|ADG01095.1| excinuclease ABC, C subunit [Clostridium botulinum F str. 230613]
          Length = 618

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 188/619 (30%), Positives = 312/619 (50%), Gaps = 19/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G ++YVGKA  L+ R++ Y   +  H+ ++  M+  I    +
Sbjct: 7   QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T     P +   R  +     
Sbjct: 67  IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVTKDGSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    +V+  I  +++TF +R+C  ++       RPCL +QI  C  PC   I   
Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y E + +  K LSG + ++ E    NM +A    ++E A + RD++  +  I       
Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMERAAENLEFEKAAMLRDKINIIEKIGEKQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              ++  D  SLY +    C Q  F   G+  G   F ++   ++ ++ ++S FL++FY 
Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +     E+ +LLE     +   K  I +P +GEK+ I+     NA       
Sbjct: 307 GTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  +  +  +LKD      L   P RIE +D S+I G  +VG MVV  +     + 
Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F    N VK  DD   M+ +L RRF   +   +   +   +     F  +PD++++D
Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL   N++  I +  + K  K         +  GE +++N    ++ FI
Sbjct: 485 GGKGQINIALEVLNTFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAI+ HR  R K + +S LD+I  IG  RK+ LL +F ++  I +++ E L
Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599

Query: 590 ASIEGISKKIACKIYNHFH 608
            SI  + KK A  +   F 
Sbjct: 600 LSIPSMDKKSAECVLEFFK 618


>gi|319938789|ref|ZP_08013153.1| UvrABC system protein C [Streptococcus anginosus 1_2_62CV]
 gi|319811839|gb|EFW08105.1| UvrABC system protein C [Streptococcus anginosus 1_2_62CV]
          Length = 599

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 173/624 (27%), Positives = 296/624 (47%), Gaps = 43/624 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  +P++NI+L+DDKS+P+I IT+  K P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENQPKYNIMLKDDKSYPFIKITN-EKYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +       + C  + I +C            + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----EKVCFYYHIGQCRAHTICHNEQHFFQ 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A  K ++E A  +RD L +++ ++     +   
Sbjct: 182 NMAQEVADFLKGHDNKIIDELKGKMTSAAEKMEFEKAAEYRDLLQSIATLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNMFPYYNDPDEDFLTYIGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354
            P  IL+  + +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 IPNEILIPSDIDEIAVQAVVDTKILK-------PQRGEKKQLVNLAIKNAQVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGQLLNIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V   DD A MR V++RR+S+++++                  PD++++DGG+G
Sbjct: 414 YKIKT--VVGPDDYASMREVIKRRYSRVMRDG--------------LIPPDLIVIDGGQG 457

Query: 475 QLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           Q++ A+  +  +L ++  I I  + K  K     E  F    + + L+      + +QR+
Sbjct: 458 QVNIARDVIQNQLGLD--IPIAGLQKNDKHQT-HELLFGDPLKVVELSHNSQEFFLLQRI 514

Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           +DE HRFAIT HR+ R K ++S  LD I G+G  RK+ L++ F ++  I ++S + +  +
Sbjct: 515 QDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGLKRKQNLMRHFKSLTNIKKASVDEIVEV 574

Query: 593 EGISKKIACKIYNHFHKNTSHTPT 616
            G+ +K+A  +     K+T    T
Sbjct: 575 -GVPRKVAEAVQEKLSKSTDKKIT 597


>gi|227872305|ref|ZP_03990662.1| excision endonuclease subunit UvrC [Oribacterium sinus F0268]
 gi|227841849|gb|EEJ52122.1| excision endonuclease subunit UvrC [Oribacterium sinus F0268]
          Length = 637

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 202/621 (32%), Positives = 321/621 (51%), Gaps = 20/621 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M      V+YVGKA  L+ R+K Y   +   + +I  M++QI    +
Sbjct: 15  ELKKLPAMPGVYLMHGDMDEVIYVGKAKILKNRVKQYFQKSTKKSVKIQQMVAQIRRFEY 74

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +E+EAL+LE+N+IK  KPR+N LL+DDK++PYI ++ +   P L+  R+       
Sbjct: 75  IVVDSEIEALVLESNLIKEYKPRYNTLLKDDKAYPYIRLSVEEPYPRLFASRNKKIKSSK 134

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           Y+GP+AS++ V + I  L++T  +R+C           RPC+ + + +C GPC  + + E
Sbjct: 135 YYGPYASMERVNEVIELLRKTMHIRNCNKVFSEDNPLARPCIYYDMGQCLGPCVLKQTKE 194

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   + +  +FLSG      +++   M +A+ + D+E A+  RD + A+  +QN     
Sbjct: 195 EYRASIPKLTEFLSGKTEATLKELEEKMLEASERLDFEKAMEFRDLIQAIQSLQNKQKIT 254

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D   L  + +   +Q  F   G+  G    FL+ D E ++ +IL+ FL+QFY 
Sbjct: 255 ALDGEDRDIIGLRRDHSDCIVQIFFVRDGKIIGRDHQFLRIDEEQSDGEILASFLQQFYN 314

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH-- 352
             P  P+ I L  E  +  +LE       G KV I VPKQG+K K++E A  NA      
Sbjct: 315 GTPFIPKEIHLPVELPDQKILEEWLSYVKGKKVYILVPKQGDKEKLVELAGKNAGILMLR 374

Query: 353 --TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E   +  L++      LP IPKRIE YD S+  G   VG MVV  E     N
Sbjct: 375 YVEKYRMEEKKRKEALEELKNACGLPEIPKRIESYDISNTSGALTVGSMVVYQEGKEKPN 434

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
           +YRKF +    +  QDD   M+ +L RRFS  +K  EEN     + +   F  +PD++++
Sbjct: 435 EYRKFRI--QSIVGQDDYGAMKEMLSRRFSHGLKEQEENKAGGKEDRLGRFSQFPDLILM 492

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + VL+ L +   I +  + K            +   +   L+ R      
Sbjct: 493 DGGKGQVGICESVLESLGIT--IPVCGMIKDEHHRTRA---LLVGNQEYPLSERSECFKL 547

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + R++DE HRFAIT HR  R K   +S L++I GIGP+R++ L++ F  ++ ++ +  E 
Sbjct: 548 LTRIQDEVHRFAITYHRSLRGKEQIHSLLEDIPGIGPVRRKALMRKFRDLEGVANADFEE 607

Query: 589 LASIEGISKKIACKIYNHFHK 609
           L S  G+ +K A  + + F  
Sbjct: 608 LLSCPGMDEKSAQSVLHFFKN 628


>gi|322807703|emb|CBZ05278.1| excinuclease ABC subunit C [Clostridium botulinum H04402 065]
          Length = 618

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 188/619 (30%), Positives = 312/619 (50%), Gaps = 19/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G ++YVGKA  L+ R++ Y   +  H+ ++  M+  I    +
Sbjct: 7   QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T     P +   R  +     
Sbjct: 67  IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVVSTRKVTKDGSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    +V+  I  +++TF +R+C  ++       RPCL +QI  C  PC   I   
Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEGAKAIRPCLNYQIGLCKAPCAQYIKKS 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y E + +  K LSG + ++ E    NM +A    ++E A + RD++  +  I       
Sbjct: 187 EYREIIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              ++  D  SLY +    C Q  F   G+  G   F ++   ++ ++ ++S FL++FY 
Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIIGREHFIIEDTFDTNSSTLISNFLKEFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +     E+ +LLE     +   K  I +P +GEK+ I+     NA       
Sbjct: 307 GTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  +  +  +LKD      L   P RIE +D S+I G  +VG MVV  +     + 
Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F    N VK  DD   M+ +L RRF   +   +   +   +     F  +PD++++D
Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL   N++  I +  + K  K         +  GE +++N    ++ FI
Sbjct: 485 GGKGQINIALEVLNTFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAI+ HR  R K + +S LD+I  IG  RK+ LL +F ++  I +++ E L
Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599

Query: 590 ASIEGISKKIACKIYNHFH 608
            SI  + KK A  +   F 
Sbjct: 600 LSIPSMDKKSAECVLEFFK 618


>gi|308174545|ref|YP_003921250.1| excinuclease ABC subunit C [Bacillus amyloliquefaciens DSM 7]
 gi|307607409|emb|CBI43780.1| excinuclease ABC (subunit C) [Bacillus amyloliquefaciens DSM 7]
 gi|328912871|gb|AEB64467.1| excinuclease ABC (subunit C) [Bacillus amyloliquefaciens LL3]
          Length = 590

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 178/613 (29%), Positives = 305/613 (49%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDK++P+I IT   + P L   R+    +G YFGP+
Sbjct: 71  NLEALILEMNLIKKYDPKYNVMLKDDKTYPFIKIT-HERHPRLIVTRNVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+    +   R CL + + +C  PC  +IS E   E V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           +  +FL GG++ +K+++   M +A  K ++E A   RD+LA +           N     
Sbjct: 186 DITRFLKGGHNEVKKELEEKMTEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMNDLLDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTYIGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           IL+ +  +   + E+        +  +  PK+G K++++  A  NA  +     +     
Sbjct: 306 ILVPDSVDRDMISELL-------ETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E       +   +   + + P RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERSIGAAERLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPNKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR+S++++                   PD++I+DGGKGQ++A
Sbjct: 418 T--VTGPDDYGSMREVVRRRYSRVLREN--------------LPLPDLIIIDGGKGQINA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L ++  + +  +AK  K             E + L       Y +QR++DE 
Sbjct: 462 ARDVLENELGLD--VPVAGLAKDDKHRTSN-LLIGDPLEPMFLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+A+ S LD+I GIG  RK++LL+ FG+VK +  +S + +    G+ 
Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLDDIKKA-GVP 577

Query: 597 KKIACKIYNHFHK 609
              A  ++    K
Sbjct: 578 AAAAQMLFEKLKK 590


>gi|294496413|ref|YP_003542906.1| excinuclease ABC, C subunit [Methanohalophilus mahii DSM 5219]
 gi|292667412|gb|ADE37261.1| excinuclease ABC, C subunit [Methanohalophilus mahii DSM 5219]
          Length = 604

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 199/615 (32%), Positives = 337/615 (54%), Gaps = 30/615 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
                P  PGVY M D    ++Y+GKA +L+KR+  Y  ++ N + +   ++S+I +I +
Sbjct: 11  DISDFPHLPGVYLMKDENETIIYIGKARDLKKRVSQYFQADKNKSPKTKVLVSKIRDIEY 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TEVEAL+LEAN+IK+ +PR+NI L+DDK +PY+ +T   + P +Y  R        
Sbjct: 71  IVTSTEVEALILEANLIKKNRPRYNISLKDDKRYPYVKVTINSRYPRIYLVRRRMMDDAV 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ SV  V  T++ + + F +R C  +  + + RPCL + I RC GPCTG++ +E+Y
Sbjct: 131 YFGPYTSVKPVRTTLDLISQIFKIRRCHGNPAQKK-RPCLNYHINRCMGPCTGDVDAEEY 189

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSI 238
            + V  A K+L G   +L  K+ + M +   K+ YE+A + RD++  L     Q    + 
Sbjct: 190 RDNVKAAVKYLRGDTGDLLGKLKQQMQEYAEKQRYEAASVIRDQIGGLKELAKQQKTTAG 249

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            +  D   L+ ++    +Q  +   G   G   F L     ST+++I++ F++Q+Y D P
Sbjct: 250 IDDRDVIGLHVDEKDIYVQLFYVRNGNMVGRADFELNRGK-STSSEIIAEFIKQYYQDSP 308

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I++ E   E  ++     ++ G KV + +P+ GEK+K+++ A+ NA  +  +  + 
Sbjct: 309 VPPEIVVPEMPPEEEVILKWLSEKAGRKVTLNIPRIGEKKKLLDMAMKNATMAKERANTE 368

Query: 359 EISHQ---MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           +   +     L+   +K  +  +P+ IE +D S+I G   V  MVV       K  YR +
Sbjct: 369 KAKMEGTLQGLETLQEKLGIGTLPRHIEGFDISNISGSDPVASMVVFKNGTPSKADYRHY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    V+  DD AMM   +ERR+S +  +++ +              PD++++DGG+GQ
Sbjct: 429 NIKS--VEGIDDFAMMAEAVERRYSHIKDDKQAM--------------PDLILIDGGEGQ 472

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++AA   L+KL +   I II +AK  +     +       + L+L  + P L  + ++RD
Sbjct: 473 VNAASRELQKLQI--NIPIIGLAKKFEHIIFPDT---HPRKLLILPKKSPALKMLMQVRD 527

Query: 536 EAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFA+ +HRKRR  + ++S LD I GIG  +K+ LLQ FG+V+ + ++  + +A + G
Sbjct: 528 EAHRFAVASHRKRRSARLSHSELDGIEGIGEKKKKELLQHFGSVEKVRQAEEKEIAEVGG 587

Query: 595 ISKKIACKIYNHFHK 609
           I K +A +I     +
Sbjct: 588 IGKALAMRIAEKLRE 602


>gi|153956163|ref|YP_001396928.1| excinuclease ABC subunit C [Clostridium kluyveri DSM 555]
 gi|189038039|sp|A5N361|UVRC_CLOK5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|146349021|gb|EDK35557.1| UvrC [Clostridium kluyveri DSM 555]
          Length = 622

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 194/619 (31%), Positives = 322/619 (52%), Gaps = 19/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   + NH+ ++  M+  I+   +
Sbjct: 7   QLKILPDKPGVYLMKNSLGEVIYVGKAKILKNRVRQYFQKSKNHSEKVRTMVKHISEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK+ +PR+NILL+DDK +P I IT     P +   R+       
Sbjct: 67  IVTDSEMEALVLECNLIKKYRPRYNILLKDDKIYPLIKITLNEDFPRIICARNKIKDGAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV +T+  +++ F +R C  ++ +   + RPCL + I  C  PCTG IS E
Sbjct: 127 YFGPYISTGAVYETMEVIKKIFPIRDCKLNIKKGNVKVRPCLNYHIGLCKAPCTGHISKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + +     FLSG N ++  K+  +M+  +   ++E A   RD++ AL  I       
Sbjct: 187 EYGKIISGVMDFLSGKNKDIIRKLKEDMDTLSENMEFEKAAELRDKIFALEKIIEKQKIT 246

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +++ ++  +CIQ  F   G+  G   F ++   +    +I++ F+++FY 
Sbjct: 247 TGGFEDEDFINIHSDEKDSCIQVFFSRTGKIIGREHFIIEDTQDLPKGEIVANFIKEFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +   E  +  LLE     +   KV I +P++G+K+ I+     NA       
Sbjct: 307 GTAYIAKTIYVPEIYDVQLLEDWLSIKKDSKVYIKIPQKGDKKAILNLVEKNARTTLQNF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + +  +  ++  L++  +   L  IP RIE YD S+I G  +VG MVV        N 
Sbjct: 367 KLKFIQDKKMYETSLEELMEILNLDDIPHRIEAYDVSNIQGVDSVGTMVVFENGRPKHND 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP-KKQEYSFPSWPDVVILD 470
           YR+F    N+VK  +D   M+ +L RRF   ++  + +     +     F  +PD++++D
Sbjct: 427 YRRF--KINEVKGANDYESMKEILRRRFQNGMEEIKRIKERKLEFSAGKFSFFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+SAA  VLK+ N++  IT+  + K  K         + + E + LN    I+  I
Sbjct: 485 GGKIQVSAALEVLKEFNID--ITVCGMVKDDKHRTRG---LIYRNEEMPLNRNSNIIKLI 539

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFA+T HR  R K   +S L++I  +G  R++ LL+ F +V+ I ++S E L
Sbjct: 540 TRIQDEVHRFAVTYHRSLRSKRVLHSVLEDIPNVGVKRRKELLKRFLSVENIKKASMEEL 599

Query: 590 ASIEGISKKIACKIYNHFH 608
            S   I  + A  I ++F 
Sbjct: 600 ISTPSIDMRTAESIISYFR 618


>gi|163803039|ref|ZP_02196925.1| excinuclease ABC subunit C [Vibrio sp. AND4]
 gi|159173213|gb|EDP58042.1| excinuclease ABC subunit C [Vibrio sp. AND4]
          Length = 588

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 199/607 (32%), Positives = 318/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M ++   V+YVGKA +L+KR+ SY  +   + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNVEAVVIYVGKAKDLKKRLSSYFRTKVDSEKTRALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR S   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGSKKRKGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193
           ++ LQ+   +R C D+V+ +RTRPCL++QI RC+GPC    IS E+Y + V   + FL G
Sbjct: 120 LHLLQKILPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSTIISDEEYADLVGFVRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHN 250
            ++ + E++   M  A+ +  +E A   RD++ A+  +Q       + MD          
Sbjct: 180 KDNQVLEQLIEKMEVASQRLHFEDAAKFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306
             +ACI       G+  G+ + F K    ++  ++   FL Q+Y         P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPHNTSQQEVFDSFLTQYYLSHNEARTIPTRIILN 299

Query: 307 EEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           +E       ++ +  +  G KV+      G + + ++ +  NA  + T K++ +++    
Sbjct: 300 QELGGDIEPIQQALSEVAGRKVQFHTSPAGVRGRYLKLSNTNALTAITTKINHKMTINQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K   +  A+  I  R+E +D SH MG S +   VV    G VK +YR++N+    +   
Sbjct: 360 FKALREVLAMETIS-RMECFDISHTMGESTIASCVVFNSEGPVKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M   LERR+S+ +  E+                P+++ +DGGKGQL+ A  ++ +
Sbjct: 417 DDYAAMGQALERRYSKQLDVEK---------------IPEIIFIDGGKGQLNRAHEIICQ 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R T+I IAKG  R  G+E      G+   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 YWGDWPKRPTMIGIAKGVTRKPGLETLITVDGDEFNLPSDAPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +  + GIS  +A  
Sbjct: 522 GHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEITKVPGISHSLAEI 581

Query: 603 IYNHFHK 609
           I+    +
Sbjct: 582 IFQALKQ 588


>gi|86148830|ref|ZP_01067095.1| excinuclease ABC subunit C [Vibrio sp. MED222]
 gi|85833381|gb|EAQ51574.1| excinuclease ABC subunit C [Vibrio sp. MED222]
          Length = 588

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 197/607 (32%), Positives = 321/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA NL+KR+ SY      + +   ++S I+ I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAVVIYVGKAKNLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKKKGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193
           ++ LQ+ F  R C D+V+ +RTRPCL++QI RC+ PC    IS E+Y E +   + FL G
Sbjct: 120 LHLLQKIFPARQCEDTVYANRTRPCLMYQIGRCAAPCVSSIISDEEYSELIDYVRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            +  + E +   M+ A+ +  +E A   RD++ A+  +Q       +    MD       
Sbjct: 180 KDKLVLETLIEKMDTASRELRFEQAAAFRDQIQAIRRVQEQQYVSDDSMEDMDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306
             +ACI       G+  G+ + F K  + +   ++ S FL Q+Y      +  P  ++L+
Sbjct: 240 NGVACIHILMIRQGKVLGSRSHFPKIPNNTVREEVFSSFLSQYYLAHNEARTIPTRLILN 299

Query: 307 EEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
            +  E+ + ++ +  +  G K+       G + + ++ +  NA  + T K++ +++    
Sbjct: 300 ADLMEDITPIQEALCEVAGRKIHFNTNPSGTRGRYLKLSNTNALTAITTKINHKMTINQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K+  +  ++  I  R+E +D SH MG S +   VV  + G VK +YR++N+    +   
Sbjct: 360 FKELQEVLSMDVIK-RMECFDISHTMGESTIASCVVFNQEGPVKPEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M   LERR+S+ +  ++                PD++ +DGGKGQL+ A  ++ +
Sbjct: 417 DDYAAMAQALERRYSKQLDVDK---------------IPDIIFIDGGKGQLNRAHEIISQ 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  ++ IAKG  R  G+E     +GE   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 YWGDWPFRPRMMGIAKGVTRKPGLETLVTLEGEEFNLPSDAPALHLIQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I G+GP R++ LL+  G ++ + R++ E +A + GIS  +A  
Sbjct: 522 GHRAKRGKTRRTSALEGIEGVGPKRRQSLLKYMGGLQELKRATVEEIAKVPGISHSLAEN 581

Query: 603 IYNHFHK 609
           IY    +
Sbjct: 582 IYQALKQ 588


>gi|126640394|ref|YP_001083378.1| excinuclease ABC subunit C [Acinetobacter baumannii ATCC 17978]
 gi|213155755|ref|YP_002317800.1| excinuclease ABC, C subunit (EsvL) [Acinetobacter baumannii AB0057]
 gi|215484868|ref|YP_002327107.1| excinuclease ABC, C subunit [Acinetobacter baumannii AB307-0294]
 gi|213054915|gb|ACJ39817.1| excinuclease ABC, C subunit (EsvL) [Acinetobacter baumannii AB0057]
 gi|213986629|gb|ACJ56928.1| excinuclease ABC, C subunit [Acinetobacter baumannii AB307-0294]
          Length = 575

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 193/601 (32%), Positives = 305/601 (50%), Gaps = 32/601 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   VT +E EALLLE 
Sbjct: 1   MLGKEGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVTRSETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVDAVEK 133
           N+IK+ +P +NI+LRDDKS+ YI ++     P +   R     Q G +FGP+ S  +   
Sbjct: 61  NLIKQHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFGPYPSAYSARD 120

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           T+  LQ+ F +R C +S F  R RPCL +QIKRCS PC G +S E Y E V+ + +FL G
Sbjct: 121 TLLVLQKLFNVRQCENSYFSQRKRPCLQYQIKRCSAPCVGLVSPEDYKEDVNNSIRFLQG 180

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNK 251
               L +++   M QA    ++E A+ +RDRL+ L  +Q            D  ++ +  
Sbjct: 181 DTKELNQELIAKMEQAAADLEFEKAVFYRDRLSLLREVQAQQAVFKVKGEADILAIAYQA 240

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCPENILLSEEA 309
            + C+Q      G+  G  ++F          Q+LS F+  FY       P  ++++   
Sbjct: 241 GVTCVQIMHVRNGRMLGGKSYFPDM-LGDDLGQMLSDFMANFYFQVADEVPSELIVNTAL 299

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369
            +   LE +  +Q+G KV+I    +  + + +E A +N   +   +LS  +         
Sbjct: 300 PDRKELEEALAQQFGKKVQIKSSVRETRAEWLELAEMNVQHAIKGQLSNHLELNERFHQL 359

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429
            +    P     IE +D SH MG + +   VV  + G  K  YR+F +    +   DD A
Sbjct: 360 EQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD--ITAGDDYA 415

Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
            MR  L RR+ + +                    PD++++DGGKGQL  A  V+++L +E
Sbjct: 416 AMRQALTRRYKKAM-------------------LPDLLLIDGGKGQLHMAMEVMQELGLE 456

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549
               ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHRFAIT HR +R
Sbjct: 457 AF--MVGVSKGEGRKPGLETLHFTDGTKIQLPEDSKALHLIQQVRDEAHRFAITKHRAKR 514

Query: 550 -KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            K+ + S L+ I G+GP R+R LL  FG ++ + ++S + L  + G+ + +A  IY   H
Sbjct: 515 DKRRSTSVLEAIPGLGPKRRRDLLTHFGGIQGVLKASEKELTVVPGLGEVMARTIYKILH 574

Query: 609 K 609
           +
Sbjct: 575 E 575


>gi|90408955|ref|ZP_01217088.1| excinuclease ABC subunit C [Psychromonas sp. CNPT3]
 gi|90309932|gb|EAS38084.1| excinuclease ABC subunit C [Psychromonas sp. CNPT3]
          Length = 612

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 216/618 (34%), Positives = 326/618 (52%), Gaps = 30/618 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D+   V+YVGKA NL+KR+ SY        +   ++S I +I  TVT 
Sbjct: 12  TLTSAPGVYRMFDVREEVIYVGKAKNLKKRLNSYFSLTQKHPKTLALVSHIAHIEVTVTH 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSYFG 123
           TE EAL+LE N IK+ KP++NILLRDDKS+PY+ ++  HK P L   R      +G+YFG
Sbjct: 72  TETEALILEHNFIKQYKPKYNILLRDDKSYPYLFLS-AHKHPQLSLVRRKNQKRKGTYFG 130

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  AV  ++N + + F +R C+DS + +R+R CL FQ+KRC  PC    S ++Y   
Sbjct: 131 PYPSGSAVRSSLNLMNKLFPIRQCSDSYYANRSRACLQFQLKRCLAPCVKGFSEQEYSHQ 190

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--R 241
           V  A +FL G +  + E +   M  A+ +  +E A I RD++ +L  +Q       +  +
Sbjct: 191 VALASEFLQGKSQQVIETLIVEMQSASTQLAFEKAAIRRDQIQSLKKVQEQQWVSGDIEQ 250

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDK 297
           +D   L + + +A     F   G+  G+  +F K    S+  ++L  FL QFY      +
Sbjct: 251 VDVLGLSYEQGVASFHLLFIRQGRILGSRNYFPKVPLHSSKDELLLAFLSQFYLSGQNGR 310

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ ILLS++  +         +   YKV++ V  +G + K I  A  NA  + +  L+
Sbjct: 311 AVPKEILLSDDFTDRHSFTALLSEYCDYKVQLKVDVRGTRGKFIALAKTNAITALSSHLA 370

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + S            +L    +R+E YD SH+MG   V   VV  ENG  K+ YR FN+
Sbjct: 371 KKSSLSKRYLLLEGFLSLDAPIRRMECYDISHMMGEKTVASCVVFDENGAKKSAYRHFNI 430

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M  VL RRF                 + +  + PDV+ +DGG GQLS
Sbjct: 431 QG--ITPGDDYAAMAQVLSRRFKD---------------KQTLENIPDVIFIDGGLGQLS 473

Query: 478 AAQGVLKKL--NVENRIT-IISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRL 533
            A+ VL KL  N+  +   ++ IAKG  R AG E   + +  + L ++   P L+ IQ +
Sbjct: 474 QAEKVLDKLRDNLSLKWPLLVGIAKGVARKAGEETLILAQTHQILDIDSDSPALHLIQEI 533

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE+HRFAI  HR +R KK   S L+ I G+G  +++ LL  FG ++ I  ++ + LA +
Sbjct: 534 RDESHRFAILGHRGQRDKKRRSSTLENILGVGVKKRQQLLNHFGGLQGIKVATIDELAKL 593

Query: 593 EGISKKIACKIYNHFHKN 610
            GIS  +A +IY   H +
Sbjct: 594 SGISVHLATRIYEQLHGH 611


>gi|148381321|ref|YP_001255862.1| excinuclease ABC subunit C [Clostridium botulinum A str. ATCC 3502]
 gi|153931930|ref|YP_001385697.1| excinuclease ABC subunit C [Clostridium botulinum A str. ATCC
           19397]
 gi|153936269|ref|YP_001389103.1| excinuclease ABC subunit C [Clostridium botulinum A str. Hall]
 gi|229558017|sp|A7FYX4|UVRC_CLOB1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229558018|sp|A5I7A5|UVRC_CLOBH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|148290805|emb|CAL84939.1| excinuclease ABC subunit C [Clostridium botulinum A str. ATCC 3502]
 gi|152927974|gb|ABS33474.1| excinuclease ABC, C subunit [Clostridium botulinum A str. ATCC
           19397]
 gi|152932183|gb|ABS37682.1| excinuclease ABC, C subunit [Clostridium botulinum A str. Hall]
          Length = 618

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 188/619 (30%), Positives = 312/619 (50%), Gaps = 19/619 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G ++YVGKA  L+ R++ Y   +  H+ ++  M+  I    +
Sbjct: 7   QLKNLPDKPGVYLMKNNLGEIIYVGKAKILKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T     P +   R  +     
Sbjct: 67  IITDSEIEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLAEDFPRVISTRKVTKDGSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    +V+  I  +++TF +R+C  ++       RPCL +QI  C  PC   I   
Sbjct: 127 YFGPYVDGSSVKDIIELIKKTFPIRTCKKNIVEEAKAIRPCLNYQIGLCKAPCAQYIKKS 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y E + +  K LSG + ++ E    NM +A    ++E A + RD++  +  I       
Sbjct: 187 EYRETIDDVIKLLSGKHLDIVENFKLNMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              ++  D  SLY +    C Q  F   G+  G   F ++   ++ ++ ++S FL++FY 
Sbjct: 247 LNNFDNEDYISLYSDGKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                   +     E+ +LLE     +   K  I +P +GEK+ I+     NA       
Sbjct: 307 GTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTIKIPIKGEKKNILVLVEKNAKTTLENF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  +  +  +LKD      L   P RIE +D S+I G  +VG MVV  +     + 
Sbjct: 367 KLKYLQEKALYDNVLKDLKNILRLQEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F    N VK  DD   M+ +L RRF   +   +   +   +     F  +PD++++D
Sbjct: 427 YRRF--KINTVKGADDYKSMKEILTRRFQHGLSEIKSIQDRKLEFSSGKFSVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL   N++  I +  + K  K         +  GE +++N    ++ FI
Sbjct: 485 GGKGQINIALEVLNAFNID--IPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAI+ HR  R K + +S LD+I  IG  RK+ LL +F ++  I +++ E L
Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599

Query: 590 ASIEGISKKIACKIYNHFH 608
            SI  + KK A  +   F 
Sbjct: 600 LSIPSMDKKSAECVLEFFK 618


>gi|229816361|ref|ZP_04446667.1| hypothetical protein COLINT_03410 [Collinsella intestinalis DSM
           13280]
 gi|229808062|gb|EEP43858.1| hypothetical protein COLINT_03410 [Collinsella intestinalis DSM
           13280]
          Length = 661

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 171/634 (26%), Positives = 303/634 (47%), Gaps = 49/634 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P+ PG Y   D +G V+YVGKA NL+ R++ Y+   +   +I  M+  + +  + V  
Sbjct: 32  EVPDDPGCYLWKDASGEVIYVGKAKNLRARLRQYVTLTDDRAKIPLMMQLVASFDYIVVE 91

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE  +I +  P FN+  +DDKS+PYI IT     PA+   R+       Y+GP
Sbjct: 92  SEHEALVLERELIAQYHPYFNVDYKDDKSYPYIAITRGDVFPAIKYTREKHRPDTRYYGP 151

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR---------------------HRTRPCLLFQ 163
           +    A  +TI++L++   + + + + ++                     ++ RPC  + 
Sbjct: 152 YTDSRAARETIDTLRKVCPICTASCAEWKRVRRLLEKRPDDTDVIELICSNQGRPCFDYH 211

Query: 164 IKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223
           + R  G C G I  E+Y   V   ++FLSG    L +++  +M +A    D+E A   + 
Sbjct: 212 VGRGPGVCAGMIGREEYAVNVRRVERFLSGQRRELVDELKADMAEAAADLDFERAGRIKR 271

Query: 224 RLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280
           RL  +  + +    ++      D    Y  + +A         G+ + TC F L    + 
Sbjct: 272 RLEVIDGLDDRQQVVFPTSVDLDLIGFYREETIAGTCVFVVREGRVQRTCEFILDKGFDV 331

Query: 281 TNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339
              ++ S F++++Y +    P  + L+ E  +  ++      + G   ++  P++GEK +
Sbjct: 332 DEVELASGFVKRYYDETADVPHEVDLAIELPDADVVGEWLTGKRGRVCRLHRPQRGEKHR 391

Query: 340 IIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395
           +++ A  NA  +  + +      +      L       AL   P RIE +D S + G   
Sbjct: 392 LLQMAERNARHALMRYMMRTGYSDDRTNQALLQLESALALDAPPMRIECFDISTLHGAFT 451

Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455
           V  MVV       K+QYR+F +    +   +D   M  VL RR+              + 
Sbjct: 452 VASMVVFTNGKPDKSQYRRFKIRAE-LDEANDFVSMSEVLGRRY-----------APERM 499

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
            +  F S PD++++DGG+ QL+AA   L++L ++  I +  +AK  +     E F     
Sbjct: 500 ADERFGSRPDLLVVDGGRPQLTAAMRQLEELGLD--IPVCGLAKADE-----EVFVPWDD 552

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQS 574
             +VL      LY I+++RDE+HRFAIT HR+ R KA   S LDE+ G+GP RK+ +++ 
Sbjct: 553 TPIVLPSGSASLYLIKQVRDESHRFAITFHRELRGKAMTVSVLDEVPGVGPTRKKAIMKR 612

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           FG++K +  +S   +A + G+  ++A  ++    
Sbjct: 613 FGSMKRLRAASEAEIAEVPGVPAEVARSVFESLR 646


>gi|332288737|ref|YP_004419589.1| excinuclease ABC subunit C [Gallibacterium anatis UMN179]
 gi|330431633|gb|AEC16692.1| excinuclease ABC subunit C [Gallibacterium anatis UMN179]
          Length = 588

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 197/607 (32%), Positives = 331/607 (54%), Gaps = 33/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D    V+YVGKA NL+KR+ SY   N ++ +   +++ I++I  T+T +E EALLLE 
Sbjct: 1   MYDRNNTVIYVGKAKNLKKRLSSYFRKNVNSKKTEALVASIDHIDTTITHSETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+ +P +N+LLRDDKS+PYIL+T   + P +  +R +  I G YFGP+    AV +T
Sbjct: 61  NFIKQYQPHYNVLLRDDKSYPYILLT-HERHPRITSYRGAKKIAGEYFGPYPHSSAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C +SV+ +R+RPCL +QIKRC  PC    ++ E+Y + V  A+ FL G
Sbjct: 120 LSLMQKLFPIRQCENSVYNNRSRPCLQYQIKRCLAPCVAGYVTDEEYQQQVELARLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250
            +  +   +   M QA+ + D+E+A  +RD++ A+  +           + +D  ++ + 
Sbjct: 180 KDQQVVTHLIEKMEQASNRLDFEAAARYRDQIQAVRSVMEKQFVSNDRLDDIDIIAIAYK 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306
             LAC+Q  F   G+  G  ++F K  + +  A+++  FL QFY      +  P++I++ 
Sbjct: 240 SGLACVQVLFIRHGKILGNRSYFPKIPANTQIAEVIETFLGQFYLQAHQGRSIPDSIVID 299

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
                  +L+    +Q G +V+I    +GEK + ++ A  NA  + T +L  +   +   
Sbjct: 300 HSLAGKEMLQTLLSEQAGRQVQIQDKVKGEKNRYLQLAQTNASVALTTQLKQQGRIEERY 359

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           +   +   +    +R+E +D SH MG + +   VV G  G +K+ YR+FN+        D
Sbjct: 360 QALQQLLHMD-KIQRMECFDISHTMGENTIASCVVFGSEGPLKSDYRRFNIEGT--HGDD 416

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
             AM + + +R    L   +                 PD++ +DGGKGQL+ A  V   L
Sbjct: 417 YAAMEQALKKRYDKDLTVEK----------------IPDIIFIDGGKGQLNRALAVFDNL 460

Query: 487 NV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAI 542
           NV   +++  +I +AKG  R AG+E   +   E  + L   +  L+ IQ +RDE+H  AI
Sbjct: 461 NVSWDKHKPLLIGVAKGVDRKAGLETLLIGNSEREMHLEPDNLALHLIQHIRDESHNHAI 520

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           + HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ + LAS+ GIS+ +A 
Sbjct: 521 SGHRKKRQKAFIQSGLESIEGVGAKRRQALLKYLGGLQGVRAATIDELASVPGISRSLAE 580

Query: 602 KIYNHFH 608
           KI+    
Sbjct: 581 KIFETLK 587


>gi|282897007|ref|ZP_06305009.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Raphidiopsis brookii D9]
 gi|281197659|gb|EFA72553.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Raphidiopsis brookii D9]
          Length = 631

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 197/625 (31%), Positives = 305/625 (48%), Gaps = 37/625 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY M D    ++Y+GK+  L+ R++SY     N T RI  M+ QI +I F +T
Sbjct: 22  EIPLGPGVYLMRDDRDTIIYIGKSRKLRSRVRSYFRDYTNKTQRINTMVQQITDIEFILT 81

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST------- 116
            TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT   + P L+  R           
Sbjct: 82  DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEEYPRLFITRKRQRGTQKLQG 141

Query: 117 ---IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  Y+GP+     + + ++  Q+ F +R     +F  + RPCL + I RC G C  
Sbjct: 142 DRPHKDKYYGPYTDSTLLREVLHICQQIFPMRQRPQPLF--KDRPCLNYDIGRCPGVCQK 199

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            +S E Y + V +      G    L + +   M  A  + ++E+A   RD++  L  +  
Sbjct: 200 LVSVEDYHKVVEKVAMVFQGRTEELIDILTLQMETAVSELNFEAAAGIRDQIIGLKSLTA 259

Query: 234 HNDSIYNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289
                        D  +L  +   A IQ      G+  G   F     +E    +IL   
Sbjct: 260 RQKVSLPDDTVSRDAVALATDNQQAHIQLFQIRAGKLVGRLAFIANAHAE--PGEILQRV 317

Query: 290 LRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
           L + Y        P  IL+  +     +L     ++ G KV I  P +  K ++IE    
Sbjct: 318 LEEHYQTADSVEIPPEILVQHKLPHGDILADFLRQRKGKKVNIITPLRQTKAELIEMVEK 377

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA     +       +Q  L+D  +   L  +P RIE YD SHI G +AVG  VV  +  
Sbjct: 378 NAQYELKRMQKMGEVNQKCLEDLAEILGLLDLPHRIEGYDISHIQGSNAVGSQVVFIDGL 437

Query: 407 FVKNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
             K  YR + +   +V     DD   +  V+ RRF + I+N       P+        WP
Sbjct: 438 PAKQYYRHYKIKNPNVTIGHSDDFTSLAEVIYRRFRKYIEN-------PQLPRQGNDDWP 490

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGGKGQLSA   +L+++++   + +IS+AK  +     E F   + + L+     
Sbjct: 491 DLIMIDGGKGQLSAVVNILQEVDLLKDLQVISLAKKRE-----EIFLPDESQPLITQTEQ 545

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           P L  ++RLRDEAHRFAI  HR++R      S LDEI G+G  R++LLL  F T+  I +
Sbjct: 546 PGLQLLRRLRDEAHRFAIGFHRQQRSNQWQRSCLDEIPGLGAHRQKLLLAHFRTIDYIRQ 605

Query: 584 SSPETLASIEGISKKIACKIYNHFH 608
           ++ + LA   GI  K+A +I+++FH
Sbjct: 606 ATVQQLAEPPGIGLKLAQQIFSYFH 630


>gi|317124808|ref|YP_004098920.1| excinuclease ABC subunit C [Intrasporangium calvum DSM 43043]
 gi|315588896|gb|ADU48193.1| Excinuclease ABC subunit C [Intrasporangium calvum DSM 43043]
          Length = 709

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 195/695 (28%), Positives = 310/695 (44%), Gaps = 87/695 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              ++P  PGVY+  D  GRV+YVGKA +L+ R+ SY         R   M++   ++ +
Sbjct: 10  KPGEIPVDPGVYRFRDAHGRVIYVGKAKSLRPRLSSYFQDIAALHPRTATMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+P++ +T   + P     R +      
Sbjct: 70  TVVRTEVEALALEYSWIKEFDPRFNVKYRDDKSYPFLAVTMGDEFPRAQVMRGAKRRGTR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ L R F +R+C+  VF+      RPCLL  I +CS PC G +S+
Sbjct: 130 YFGPYGHAWAIRETLDLLLRVFPVRTCSAGVFKRAAASGRPCLLGYIDKCSAPCVGRVSA 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           +++     E   F+SG      +++   M  A+ + ++E A   RD L A+         
Sbjct: 190 DEHRAIAEEFCDFMSGDTTRFLKRLETRMKDASARLEFEEAARLRDDLNAMRKALEKQAV 249

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN-------AQILS 287
           +       D F++  +   A +Q      G+ RG   + ++ +SE           Q+  
Sbjct: 250 VLGDATDADVFAVVDDDLEAAVQVFHVRGGRIRGQRGWVVEKESEDLPLLIEHLLQQVYG 309

Query: 288 YFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
                  +    P  +L+     +   + +    + G  V + VP++G+KR+++E    N
Sbjct: 310 DVDPDHGSRDVVPREVLVPLLPTDPEAVAVWLSDRRGSTVSVRVPQRGDKRRLMETVRRN 369

Query: 348 AHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
           A +S  +               L++      LP  P RIE YD SH+ G + V  MVV  
Sbjct: 370 AEQSLARHKVARAGDLTLRSQALQELQDHLGLPEAPLRIECYDVSHVQGTNVVASMVVFE 429

Query: 404 ENGFVKNQYRKFNLH------------PNDVKTQDDCAMMRMVLERRFSQLIKNEE---- 447
           +    K++YR+F +              +     DD A MR VL RRF + ++  E    
Sbjct: 430 DGLARKSEYRRFIVRGGAPTADGGMAPGSQPGPVDDTAAMREVLGRRFRRYLEEAEGTGD 489

Query: 448 ----------------------------------------------NLNFHPKKQEYSFP 461
                                                                 +   F 
Sbjct: 490 LDLATGVESGIGSGVGSGVGSGVGSGGGSAVDSGDSVTELVDDGVSGPIDPTTGRPRRFA 549

Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521
             P +V++DGG  Q++AAQ VL +L +E  + ++ +AK  +     E +  +    ++L 
Sbjct: 550 YPPSLVVVDGGLPQVNAAQAVLDELGIE-EVAVVGLAKRLE-----EVWLPRTDYPVILP 603

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
                LY +QRLRDEAHRFAIT HR+RR K    S LD + G+G  R+R LL+ FG+VK 
Sbjct: 604 RTSEGLYLLQRLRDEAHRFAITFHRQRRSKAMTASALDGVQGLGAARQRALLKHFGSVKR 663

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           +  + PE + ++ GI   +A  I  H  +     P
Sbjct: 664 LRAAEPEAIMAVPGIGPALAAAIVAHLSETVPAEP 698


>gi|227833020|ref|YP_002834727.1| excinuclease ABC, subunit C [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182492|ref|ZP_06041913.1| excinuclease ABC subunit C [Corynebacterium aurimucosum ATCC
           700975]
 gi|254764929|sp|C3PG35|UVRC_CORA7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|227454036|gb|ACP32789.1| excinuclease ABC, subunit C [Corynebacterium aurimucosum ATCC
           700975]
          Length = 684

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 186/678 (27%), Positives = 309/678 (45%), Gaps = 78/678 (11%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D   RV+YVGKA NL+ R+ +Y         R   M+    ++ +TV 
Sbjct: 13  SIPTDPGVYKFRDENRRVIYVGKAKNLRARLSNYFQDITQLHPRTRQMVLTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IKR  PRFN++ RDDK++P + ++    IP  + +R        YFG
Sbjct: 73  ASEVEALQLEYTWIKRFDPRFNVMYRDDKTYPMLAVSVGESIPRAFFYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV ++++ L R F +R+CA  VF       RPCLL  I +C  PC G +S E++
Sbjct: 133 PYSHAWAVRESLDLLTRIFPMRTCAKGVFNRHERLGRPCLLGYIGKCDAPCIGRVSPEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E V++   F++G    +++++ + M +A    ++E A   RD L A+  +      +  
Sbjct: 193 RETVNQLISFMNGNTAPVRKRVTQRMEEAAENLEFELAARLRDDLGAIDKLMEQQAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI------------ 285
                D  +   ++  A +Q      G+ RG   + ++   +     +            
Sbjct: 253 DGTDADLIAFSSDELEAAVQIFHVRTGRIRGQRGWVVERSGDQATTDVVEEGQADPGLPA 312

Query: 286 -LSYFLRQFYTD-------------------------------KPCPENILLSEEAEETS 313
            +  FL QFY+D                                  P  IL+    EE  
Sbjct: 313 LIQNFLIQFYSDAVERQRQEAAEDAKLERRGVDQESHAEPRQGNAIPREILVQALPEEAE 372

Query: 314 LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDF 369
            ++I   +  G ++ + VP++G+KR ++E    NA     Q          +    L++ 
Sbjct: 373 EVKIVLEELRGAQIDVRVPQRGDKRALLETVERNAKEQLKQHKLKRVGDLTARSAALQEL 432

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDC 428
            +   +   P RIE  D SHI G   V  +VV  +    K+ YR++ +       + +D 
Sbjct: 433 QEALGMDSAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRIKEAAGDGRSNDV 492

Query: 429 AMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSFPSWPDVVILDGGK 473
             +  V  RRF     +               EE +      Q       P + I+DGG 
Sbjct: 493 GSIAEVTRRRFKHHHDDKRAVPDEELENTTFAEEMVREEAASQTKRSSYPPQLFIVDGGA 552

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q++AAQ V  +L + + +T+I +AK  +     E +     E ++L      L+ +Q L
Sbjct: 553 PQVAAAQAVFDELGIVD-VTLIGLAKRLE-----EVWVPGDDEPVILPRNSQALFLLQHL 606

Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHR AI+ HR++R K   S  LD + G+GP R+  L++ FG+VK +  +S E +A +
Sbjct: 607 RDEAHRVAISYHRQQRSKRMRSSVLDAVPGLGPQRRTDLVKHFGSVKKLKEASVEEIAEV 666

Query: 593 EGISKKIACKIYNHFHKN 610
           +G   K+A  +++H H +
Sbjct: 667 KGFGPKLAQTVFDHLHAS 684


>gi|294649057|ref|ZP_06726502.1| excision endonuclease subunit UvrC [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825042|gb|EFF83800.1| excision endonuclease subunit UvrC [Acinetobacter haemolyticus ATCC
           19194]
          Length = 599

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 191/610 (31%), Positives = 306/610 (50%), Gaps = 30/610 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + + PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   V  
Sbjct: 15  HLTQLPGVYKMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVVR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK  +P +NI+LRDDKS+ YI ++     P +   R     Q G +FG
Sbjct: 75  SETEALLLEQNLIKLHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+ +LQ+ F +R C +S F  R RPCL +QIKRC+ PC G IS E Y E 
Sbjct: 135 PYPSAYSARDTLLTLQKLFNVRQCENSYFSQRKRPCLQYQIKRCTAPCVGLISPEDYKED 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V+ + +FL G    L +++   M QA    ++E A+ +RDRL+ L  +Q           
Sbjct: 195 VNNSIRFLQGDTKELNQELIGKMEQAAEALEFEKAVFYRDRLSLLREVQAQQAVFKIKGE 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300
            D  ++ H   + C+Q  +   GQ  G  ++F     +     +  +    ++      P
Sbjct: 255 ADILAIAHQAGVTCVQIMYVRNGQMLGGKSYFPDMLGDDLGQMLSDFIANFYFQVADEIP 314

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ++++ E  +   LE +  + +  K++I    +  + +  E A +N   +   KLS  +
Sbjct: 315 VELIVNLEVPDKKQLEEALQQTFNKKIQIKHKVRETRAEWQELAQMNVQHAIKGKLSNHL 374

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
                     +    P     IE +D SH MG + +   VV  + G  K  YR+F +   
Sbjct: 375 ELNERFHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD- 431

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A MR  L RR+ + +                    PD++++DGGKGQL  A 
Sbjct: 432 -ITGGDDYAAMRQALIRRYKKNM-------------------LPDLLLIDGGKGQLHMAM 471

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            V+++L ++    +I ++KG  R  G+E      G  + L      L+ IQ++RDEAHRF
Sbjct: 472 EVMQELELDAF--MIGVSKGEGRKPGLETLHFTDGTKIQLAEDHKALHLIQQVRDEAHRF 529

Query: 541 AITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR +R K+ + S L+ I G+GP R+R LL  FG ++ +  +S + L  + G+ + +
Sbjct: 530 AITRHRAKRDKRRSSSVLEAIPGLGPKRRRDLLTHFGGIQGVLNASEKELTLVPGLGEVM 589

Query: 600 ACKIYNHFHK 609
           A  IY   H+
Sbjct: 590 ARTIYKILHE 599


>gi|317129852|ref|YP_004096134.1| excinuclease ABC, C subunit [Bacillus cellulosilyticus DSM 2522]
 gi|315474800|gb|ADU31403.1| excinuclease ABC, C subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 592

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 187/614 (30%), Positives = 297/614 (48%), Gaps = 41/614 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M +  G ++YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 11  VPAQPGCYLMKNKHGTIIYVGKAKLLRNRVRSYFTGS-HDKKTQRLVSEIRDFEYIVTSS 69

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+IK+ +P++N+LL+DDKS+PY+ IT K + P L   R      G YFGP+
Sbjct: 70  NIEALLLEQNLIKKHEPKYNVLLKDDKSYPYLKIT-KEEHPRLITTRKVKKDGGKYFGPY 128

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C         R CL + I +C  PC  +++ EK  E V 
Sbjct: 129 PNVHAANETKKLLDRLYPLRKCRTLP----DRVCLYYHIGQCLAPCEFDVTQEKNQEMVQ 184

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  +KE +   M +A+ + ++E A   RD++  +  +              
Sbjct: 185 EITKFLNGGHKEIKENLTNKMLEASEELNFERAQELRDQVQHIEAVMEKQKMTMTDEVDR 244

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             E  +                 P+ 
Sbjct: 245 DVFGYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEPEDDFYTYVGQFYLNDQHRKPKE 304

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           IL+ E  +E  + E    K +        PK+G+K+++++ A  NA              
Sbjct: 305 ILIPEVIDEAVVQEFIQVKTFK-------PKKGQKKQLVDLANKNAQIALKEKFDLIERD 357

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E    + ++       +     RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 358 EQKTIVAIERLGAALNIETP-HRIEAFDNSNIQGVDPVSAMVSFLDGKPDKKNYRKYKVK 416

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+ +L+K  + L              PD++++DGGKGQ+SA
Sbjct: 417 D--VEGPDDYESMREVVRRRYIRLLKENQPL--------------PDLIVIDGGKGQISA 460

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           AQGVL+   +   I +  + K  K             E + L       Y +QR++DE H
Sbjct: 461 AQGVLED-ELGIYIPVCGLVKDEKHRTSQ-LMIGDPAEVVPLKRTSQEFYLLQRIQDEVH 518

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR  RK++ + S LD++ GIG  RKR LL+ FG++K I  ++ E +  + GI K
Sbjct: 519 RFAITFHRNVRKQSMFSSILDDVEGIGEKRKRELLKHFGSLKRIKEANIEEIEGV-GIPK 577

Query: 598 KIACKIYNHFHKNT 611
            +A  +++   +  
Sbjct: 578 LVAKALFDKIQEEE 591


>gi|209528273|ref|ZP_03276736.1| excinuclease ABC, C subunit [Arthrospira maxima CS-328]
 gi|209491293|gb|EDZ91685.1| excinuclease ABC, C subunit [Arthrospira maxima CS-328]
          Length = 624

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 203/630 (32%), Positives = 307/630 (48%), Gaps = 39/630 (6%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59
           M  +++P  PGVY M D    +LY+GK+  L+ R++SY    +NH+HRI  MI Q+ +I 
Sbjct: 15  MRLKEIPPVPGVYFMKDGNENILYIGKSKKLRSRVRSYFRDRHNHSHRINLMIQQVTDIE 74

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TI 117
           F VT TE EAL LEAN+IK  +P FN+LL+DDK +PY+ IT     P ++  R  +    
Sbjct: 75  FIVTDTEAEALALEANLIKNHQPHFNVLLKDDKKYPYLCITWSEPYPRIFITRKRNLSNP 134

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +  Y+GP+     +   +  ++R F LR     +F  + RPCL + I RC G C   IS 
Sbjct: 135 KDRYYGPYVDTGLLRSNLQLVKRLFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQQMISP 192

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E Y + V +      G    L + +   M QA  + ++E+A   RDR+  L  +      
Sbjct: 193 EDYHQIVQKVAMVFQGRTEELIKNLTAQMQQAAAELNFETAAKFRDRIQGLQSLNQDQKV 252

Query: 238 IYNRM----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ------ILS 287
                    D  +L  +   A +Q      G   G   F  K     T         I+ 
Sbjct: 253 SLPDETVSLDAIALATDGQQASVQLFQIRAGHLVGRLGFLAKVYPSETALTSLELGGIIQ 312

Query: 288 YFLRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
             L++ Y        P  I+L    ++  L+      + G KV +  P++  K  +I   
Sbjct: 313 RVLQEHYQTVDAVEIPSEIVLQYSLQDGELVADWLSDRKGRKVTLITPQRQAKLDLIAMV 372

Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
             NA+    +       H   L+D T+   LP +P RIE YD SHI G  AV   VV  +
Sbjct: 373 ERNANYELMRLQKLSDRHHQSLQDLTEILDLPDLPHRIEGYDISHIQGSDAVASRVVFID 432

Query: 405 NGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462
               K  YR++ +   DV +   DD A +  V+ RRF                Q      
Sbjct: 433 GLPAKQHYRQYKIKNPDVHSGRSDDFASLAEVIGRRFRDY-------------QNLEPQD 479

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            PD++++DGGKGQLSA   VL+ L++   + +IS+AK  +     E F   + + L  + 
Sbjct: 480 KPDLIMIDGGKGQLSAVVKVLQGLDILEELKVISLAKRRE-----EIFVPGESQPLTTHP 534

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
             P +  ++RLRDEAHRFA++ HR +R K    S LD+I G+G  R++LLL  F ++  I
Sbjct: 535 EQPGVQLLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHRQKLLLGHFRSIDYI 594

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNT 611
             ++P  LA + GI +K+A +IY++FH +T
Sbjct: 595 RMATPTQLAEVPGIGEKLARQIYDYFHPST 624


>gi|221310790|ref|ZP_03592637.1| excinuclease ABC subunit C [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221320033|ref|ZP_03601327.1| excinuclease ABC subunit C [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|255767657|ref|NP_390727.2| excinuclease ABC subunit C [Bacillus subtilis subsp. subtilis str.
           168]
 gi|251757372|sp|P14951|UVRC_BACSU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|225185285|emb|CAB14809.2| excinuclease ABC (subunit C) [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 590

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 306/613 (49%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDK++P+I +T   + P L   R+    +G YFGP+
Sbjct: 71  NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+    +   R CL + + +C  PC  +IS E   E V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              +FL GG + +K+++   M++A    ++E A   RD++A +           N     
Sbjct: 186 SITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQIAHIESTMEKQKMTMNDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           IL+ +  +++ + ++        +  +  PK+G K++++  A  NA  +     +     
Sbjct: 306 ILVPDSIDQSMIEQLL-------ETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   + + P RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERSIGAVQKLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPYKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR++++++                   PD++I+DGGKGQ++A
Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ V++ +L ++  I I  +AK  K             E   L       Y +QR++DE 
Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLEVAYLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+A+ S LD+I GIG  RK++LL+ FG+VK +  +S E +    G+ 
Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIKKA-GVP 577

Query: 597 KKIACKIYNHFHK 609
              A  +Y+   K
Sbjct: 578 AAAAQLLYDKLQK 590


>gi|320546570|ref|ZP_08040885.1| excinuclease ABC subunit C [Streptococcus equinus ATCC 9812]
 gi|320448955|gb|EFW89683.1| excinuclease ABC subunit C [Streptococcus equinus ATCC 9812]
          Length = 599

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 169/619 (27%), Positives = 293/619 (47%), Gaps = 40/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G+++YVGKA NL+ R++SY H +++T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYIHKDKNGKIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT   + P L   R        Y
Sbjct: 67  VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITVNEQYPRLMITRQIKKDGAMY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C       +  + ++
Sbjct: 127 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   + K FL G ++ + + +   M +A+   ++E A  +RD L A+S ++     +   
Sbjct: 183 EMAQDVKNFLDGKDNKIVDGLKDKMQKASDMMEFERAAEYRDLLQAISTLRTKQRVMNQD 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +         +   
Sbjct: 243 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYVGQFYRDSKHF 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + ++ +E  +  +   K          P++GEK++++  A  NA     +    
Sbjct: 303 VPKEVFIPQDIDEELVKAVVDTKVIK-------PQRGEKKQLVNLATKNARVSLQQKFDL 355

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+I G S V  MVV       K  YRK
Sbjct: 356 LEKDIRKTHGAIENIGELLNIPKPV-RIEAFDNSNIQGTSPVAGMVVFVNGKPSKKDYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K+                + PD++I+DGG+G
Sbjct: 415 FKIKT--VVGPDDYASMREVIYRRYSRVMKDG--------------LTPPDLIIIDGGQG 458

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F    E + L       + +QR++
Sbjct: 459 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 516

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  + + +  
Sbjct: 517 DEVHRFAITFHRQLRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNIQKADIDDIVN-C 575

Query: 594 GISKKIACKIYNHFHKNTS 612
           GI + +A  I    +K  +
Sbjct: 576 GIPRNVATAIKEKLNKEKA 594


>gi|119356545|ref|YP_911189.1| excinuclease ABC subunit C [Chlorobium phaeobacteroides DSM 266]
 gi|189038035|sp|A1BED8|UVRC_CHLPD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119353894|gb|ABL64765.1| Excinuclease ABC subunit C [Chlorobium phaeobacteroides DSM 266]
          Length = 631

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 182/631 (28%), Positives = 294/631 (46%), Gaps = 52/631 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVT 63
            +P  PGVYQ  +  GRV+Y+GKA NL+ R++SY  +      +   M+ +I +I   +T
Sbjct: 23  SLPSSPGVYQFKNAQGRVIYIGKAKNLRNRVRSYFRNPQQLFGKTLVMVGKIADIEVIIT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL+LE N+IK LKPR+N+ L+DDK++PY++IT+    P +   R       ++FG
Sbjct: 83  SSEVEALILENNLIKELKPRYNVNLKDDKTYPYLVITN-EPFPRILVTRQVKKDGSTWFG 141

Query: 124 PFASVDAVEKTINSL-----QRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+     +   ++ +      R+  LR   +++ R + + CL + I +C GPC G ++ E
Sbjct: 142 PYTEARQLRSILDFIGSIFPIRSCKLRLSPENISRGKFKVCLDYHIHKCKGPCEGLLTEE 201

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y+  + E  + L G        +   M     +  +E A   + ++ +L         +
Sbjct: 202 EYLLMIVEITRLLKGKTSATIRSLNERMLSFAKELKFEQAAELKTQIDSLKRYAERQKVV 261

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            +     D F++    +  C        G+  G+   ++      +   +L+  + ++Y 
Sbjct: 262 TSDTLDRDVFAVASRNDDGCGVVFKIREGKLLGSERLYMNNTEGVSVQDLLARVVERYYL 321

Query: 296 D--KPCPENILLSEEAEETS--------LLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
           +     P+ I L  E             + +IS   +    +++TVP  GEK  +I+   
Sbjct: 322 ETCNLLPDEIFLQTELPAEEKETLENLLISKISAEGKQKRTIRLTVPIIGEKAHLIQLCR 381

Query: 346 INAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
            NA     + L  +      L++        +   LP  P RIE +DNSH  G   V  M
Sbjct: 382 ENARHHLEEYLIQKQKRGEALREHSGLIALAELLHLPKTPNRIECFDNSHFHGTDYVSSM 441

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           V        K+ YRKF L    V+  DD A M  VL RR+S  +  E             
Sbjct: 442 VAFVHGKAKKSDYRKFKLKT--VQGSDDYAAMHEVLTRRYSGTLSVE------------- 486

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519
               PD++++DGGKGQLS A  VL  L ++  I +I +AK  +     E F     +   
Sbjct: 487 -LPLPDLIVVDGGKGQLSTAVKVLVSLKLD--IPVIGLAKRIE-----EIFTPHTSDPFN 538

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTV 578
           L    P L  IQ+LRDEAHRFA+T HRK R ++   + L  I GIG    + LL+ FG+V
Sbjct: 539 LPKTSPALKLIQQLRDEAHRFAVTYHRKLRTERTLETELTTIQGIGEKTAQKLLRHFGSV 598

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHK 609
            +I  +  + L +  G   K A  +Y  +H 
Sbjct: 599 DLIRTAGVDELRAAAG--NKTAALLYRFYHP 627


>gi|254520925|ref|ZP_05132980.1| excinuclease ABC, C subunit [Stenotrophomonas sp. SKA14]
 gi|219718516|gb|EED37041.1| excinuclease ABC, C subunit [Stenotrophomonas sp. SKA14]
          Length = 612

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 213/586 (36%), Positives = 320/586 (54%), Gaps = 21/586 (3%)

Query: 26  GKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFN 85
           GKA  L+ R+ SY + +    RI  MISQI  +  TVT +E EALLLE  +IK L PR+N
Sbjct: 36  GKARALRNRVGSYFNGSPKNARIMSMISQIARMDVTVTRSEAEALLLENQLIKSLSPRYN 95

Query: 86  ILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLR 145
           + LRDDK++P++L+T +   P +  HR    I G YFGP+  V AV +T+N + + F LR
Sbjct: 96  VSLRDDKTYPHVLLT-REDWPRIALHRGPRAIPGRYFGPYPGVTAVRETLNLMHKLFKLR 154

Query: 146 SCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARN 205
           SC DSVFR+R+RPCL +QI RCS PC   ++  +Y E V  A  FL G +  L  ++   
Sbjct: 155 SCEDSVFRNRSRPCLQYQIGRCSAPCVELVAPAEYAESVRRAALFLEGKSDELTRELGEQ 214

Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFSLYHNKNLACIQTCFFHF 263
           M  A+   ++E A   RD +++L  +Q           +D  ++    + AC+    F  
Sbjct: 215 MQAASEALEFEQAARLRDLISSLRSMQTRQYVDGRAADLDVLAVAMQGSQACVLLLAFRD 274

Query: 264 GQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQY 323
           G+N GT  FF +T+ E +  ++L+ F+ Q+Y +   P  ILL  E  +  LL  +     
Sbjct: 275 GRNLGTRPFFPRTNGEESPEEVLAAFVSQYYIEFEPPREILLDREIPDADLLVAALSASA 334

Query: 324 GYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIE 383
             KV++    +GE+   +E A  NA  +   +L++  +             L    KR+E
Sbjct: 335 ERKVQLKWNVRGERAGYVELASRNAQLTLATELNSRNAQHARSDALRDMLGLAEPVKRVE 394

Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI 443
            +D SH +G + V   VV    G V+ QYR+FN+  + ++  DD A MR  ++RRF + +
Sbjct: 395 CFDISHTLGEATVASCVVFDAAGPVRAQYRRFNI--SGIEPGDDYAAMRQAIDRRFRRAV 452

Query: 444 KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503
           + +                 PDV+++DGG GQL+ AQ  L  L VE  + ++ +AKG +R
Sbjct: 453 EEQ--------------GVLPDVLLIDGGAGQLAQAQAALADLGVEG-VLLVGVAKGVER 497

Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEING 562
            AG E   +  G  L     +P L FIQ++RDEAHRFAIT HR RR+KA   S L++I G
Sbjct: 498 RAGHEALVMPDGRELRPGAANPALQFIQQVRDEAHRFAITGHRGRRQKARMTSKLEDIPG 557

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           IGP R+  LL+ FG +  +  +    +A +EGI+  +A +IY + H
Sbjct: 558 IGPRRRASLLKHFGGLVGLKAAGEAEIAKVEGINDALAARIYANLH 603


>gi|172036349|ref|YP_001802850.1| excinuclease ABC subunit C [Cyanothece sp. ATCC 51142]
 gi|171697803|gb|ACB50784.1| excinuclease ABC subunit C [Cyanothece sp. ATCC 51142]
          Length = 620

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 202/618 (32%), Positives = 309/618 (50%), Gaps = 28/618 (4%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY M D  G +LY+GK+  L+ R++SY     +H+ RI  M+ Q+ NI F VT 
Sbjct: 18  LPHEPGVYLMRDYQGDILYIGKSKRLRSRVRSYFQPGQDHSPRIALMVQQVANIEFIVTD 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSYF 122
           TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R       +  Y+
Sbjct: 78  TEAEALALEANLIKQHQPYFNVLLKDDKKYPYVCITWSEAYPRIFITRKRRLNHPRDRYY 137

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+     + +T+  ++R F LR     +F  + RPCL + I RC G C G IS E Y +
Sbjct: 138 GPYVDTHLLRQTLRLVKRVFPLRQRPRPLF--KDRPCLNYDIGRCPGVCQGLISPEDYHK 195

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241
            V +      G    L EK++  M  A  +  +E A   RD++ A+  +           
Sbjct: 196 IVEKVAMIFQGRTEELLEKLSAQMELAANQLKFEQAGQIRDQIKAVQGLGIDQKVTLPDD 255

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +L  + N  CIQ      G+  G   FF  T S  T   IL   L + Y    
Sbjct: 256 TISRDAIALAADDNYTCIQLFQIRAGRLVGRLGFFADTVSG-TPESILQRVLEEHYLQVD 314

Query: 299 ---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P  IL+     ET +L     K+ G KV I VP++ +K ++I     NA       
Sbjct: 315 AVEIPSEILVQYPLPETDILANWLGKKKGKKVNIIVPQKQQKAELIRLVERNAGYELENT 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                 + + L+D  +   L  +P RIE YD SHI G +AV   VV  +    K  YR +
Sbjct: 375 KRHAQQNLLALEDLAQLLDLSSLPHRIEGYDISHIQGSNAVASQVVFIDGVSAKQSYRHY 434

Query: 416 NLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
            +   ++     DD A +  VL RRF       E        +      +PD++++DGGK
Sbjct: 435 KIKNPNITIGHSDDFASLAEVLSRRFRSYQNKSE-------TELLQLEDYPDLIMIDGGK 487

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQLS+   +L+ +N+   + +IS+AK  +     E F   + + +  +     +  ++++
Sbjct: 488 GQLSSVIKILENMNLVPPLQVISLAKKRE-----EIFLPGQSQPVTSHPEQAGVQLLRKV 542

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFA+T HR++R KK+ +S LD+I G+G  R++ LL  F ++  I  +S E L  +
Sbjct: 543 RDEAHRFAVTFHRQQRLKKSRHSRLDDIPGLGFQRQKQLLAHFHSIDYIREASIEKLQEV 602

Query: 593 EGISKKIACKIYNHFHKN 610
            G+   +A +IY++FH N
Sbjct: 603 SGVGPALAREIYDYFHPN 620


>gi|187776683|ref|ZP_02993156.1| hypothetical protein CLOSPO_00198 [Clostridium sporogenes ATCC
           15579]
 gi|187775342|gb|EDU39144.1| hypothetical protein CLOSPO_00198 [Clostridium sporogenes ATCC
           15579]
          Length = 618

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 190/618 (30%), Positives = 312/618 (50%), Gaps = 19/618 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G ++YVGKA  L+ R++ Y   +  H+ ++  M+  I    +
Sbjct: 7   QLKNLPDKPGVYLMKNNLGEIIYVGKAKVLKNRVRQYFQKSQKHSEKVKAMVKNIEEFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +P++NILL+DDK +P+I +T     P +   R  +     
Sbjct: 67  IITDSEMEALILECNLIKKYRPKYNILLKDDKHYPFIKVTLSEDFPRVISTRKVTKDGSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+   ++V+  I  +++TF +R+C  ++      TRPCL  QI  C  PC   I+  
Sbjct: 127 YFGPYVDGNSVKDIIELIKKTFPIRTCKKNIVEGAKPTRPCLNHQIGLCKAPCAQYINKS 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            Y E + +  K LSG   ++ E    NM +A    ++E A + RD++  +  I       
Sbjct: 187 DYREIIDDVIKLLSGKQLDIVENFKINMEKAAENLEFEKAAMLRDKINIIEKIGEKQKII 246

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              ++  D  SLY ++   C Q  F   G+  G   F ++   ++ ++ ++S FL++FY 
Sbjct: 247 LNNFDNEDYISLYSDEKDTCFQVFFLRNGKIVGREHFIIEDTFDTNSSTLISNFLKEFYG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
                  I+     E+  LLE     +   K  I VP +GEK+ I++    NA       
Sbjct: 307 GTAYIPKIIYVPAVEDRELLEQWLTLKKENKSTIKVPIKGEKKNILDLVQKNAKTTLENF 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  ++ +  +LKD      L   P RIE +D S+I G  +VG MVV  +     + 
Sbjct: 367 RLKYLQEKVLYDNVLKDLKNILNLKEEPIRIEAFDISNIQGFDSVGSMVVFEKGRAKPSD 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F    N VK  DD   M+ +L RRF   +   +   +         F  +PD++++D
Sbjct: 427 YRRF--KINTVKGVDDYKSMKEILTRRFQHGLSEIKAIQDRKLNFSSGKFSVFPDLILMD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A  VL   N+   I +  + K  K         +  GE +++N    ++ FI
Sbjct: 485 GGKGQINIALEVLNSFNI--NIPVCGMVKDNKHRTRG---LIYNGEEIIINKYGSVMKFI 539

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAI+ HR  R K + +S LD+I  IG  RK+ LL +F ++  I +++ E L
Sbjct: 540 TRVQDEVHRFAISYHRSLRGKNSFHSLLDDIPNIGEKRKKDLLFNFKSIDNIKKATYEEL 599

Query: 590 ASIEGISKKIACKIYNHF 607
            SI  + KK    +   F
Sbjct: 600 LSIPSMDKKSVESVLKFF 617


>gi|332524205|ref|ZP_08400431.1| excinuclease ABC subunit C [Rubrivivax benzoatilyticus JA2]
 gi|332107540|gb|EGJ08764.1| excinuclease ABC subunit C [Rubrivivax benzoatilyticus JA2]
          Length = 678

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 212/648 (32%), Positives = 322/648 (49%), Gaps = 50/648 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D AG VLYVGKA NL+KR+ SY H ++   RI  M+++I  +  TV  T
Sbjct: 36  LPGLPGVYRYFDAAGGVLYVGKARNLKKRVSSYFHKDHGGTRIGAMVARIARLETTVVRT 95

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI-----------PALYKHRDS 114
           E EALLLE N+IK L P+FNIL RDDKS+PY+ IT                  +   R +
Sbjct: 96  EAEALLLENNLIKTLNPKFNILFRDDKSYPYLKITGTRSADGAGALTAASCARVAYFRGA 155

Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
              +  YFGP+ +  AV++TI  +Q+ F LR+C D+VF +R+RPCLL+QI+RCSGPC G 
Sbjct: 156 VDRKHRYFGPYPNAWAVKETIQLIQKVFRLRTCEDTVFANRSRPCLLYQIQRCSGPCVGL 215

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           +S + Y   VH+A++FL G    +   +   M       +YE A   RDR+ +LS + + 
Sbjct: 216 VSKDDYARDVHDAERFLLGEQQEVVADLQAQMMAFAEAYEYEKAAAVRDRIGSLSRVLHQ 275

Query: 235 NDSIYN-------RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-------- 279
                +        +D  ++      AC+        ++ G   +F     +        
Sbjct: 276 QAMEASSLSAGDKDVDILAVRVAGGRACVNLAMVRGSRHLGDRAYFPTHVDDGAALSATE 335

Query: 280 --------STNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331
                   S    +L  F+ Q Y  +  P  ++ S   +   +   +  +  G +V+ T 
Sbjct: 336 ADERADAPSPETAVLEAFIAQHYLGQAVPPQLVTSHPVDPELI--ETLSEAAGVRVRATQ 393

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK--RIEIYDNSH 389
             + +KR  +E A   A  +  + L+ E S +   +   +   L   P   RIE +D SH
Sbjct: 394 QPREQKRIWLELAEKGAELALARLLAEEGSQRERTRALVEALELDVEPDALRIECFDISH 453

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN- 448
             G +     VV   +     QYR+FN+    V   DD A MR VL RR+++L +     
Sbjct: 454 TAGEATQASCVVYEAHAMQSAQYRRFNIEG--VTGGDDYAAMRQVLTRRYARLAEARRQD 511

Query: 449 -----LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503
                 +      +      PD+V++DGG+GQ+S A+ V  +L +   I I+ + KG  R
Sbjct: 512 AQDGAADEAAAPAKKGTARLPDLVLVDGGRGQVSMAREVFTELGLPLSI-IVGVEKGEGR 570

Query: 504 SAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEI 560
             G+E+     G   + L      L  + ++RDEAHRFAIT  R RR       S L++I
Sbjct: 571 KVGLEELVFADGREKVYLGHDSAALMLVAQIRDEAHRFAITGMRARRASVRTGGSKLEDI 630

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            G+GP ++  LLQ FG V+ ++ +S E LAS++GIS  +A +IY   H
Sbjct: 631 PGVGPRKRSRLLQRFGGVRGVAAASVEDLASVDGISHDLAEEIYRALH 678


>gi|315641292|ref|ZP_07896369.1| excision endonuclease subunit UvrC [Enterococcus italicus DSM
           15952]
 gi|315483059|gb|EFU73578.1| excision endonuclease subunit UvrC [Enterococcus italicus DSM
           15952]
          Length = 598

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 176/615 (28%), Positives = 297/615 (48%), Gaps = 41/615 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+  G Y M D  G ++YVGKA  L+ R++SY   ++ T +   ++S+I +  + VT +
Sbjct: 12  LPDQSGCYLMKDKNGTIIYVGKAKVLKNRVRSYFTGSHDT-KTERLVSEIVDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+I++  P++NI+L+DD S+P+I IT+    P L   R     +  YFGP+
Sbjct: 71  NIEALVLEINLIQQNNPKYNIMLKDDTSYPFIKITN-EAYPRLLITRKVLKDKAFYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R F  R C           CL + + +C  PC  +I  E Y +   
Sbjct: 130 PDVRAANETKKLLDRLFPFRKCKVLPKD----VCLYYHMGQCLAPCVFDIPKETYTKMAI 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E ++FL+GG+  +++ + + M  A  + ++E A  +RD++ A+  +              
Sbjct: 186 EIRRFLNGGHAQIQKMLTQRMEDAAERLEFEKAAEYRDQIQAIETVMTRQKMTQTDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F         C+Q  F   G+            +++    +              P+ 
Sbjct: 246 DVFGYDILNGWMCVQVFFIRQGKVIERDVSMFPFYNDAPEDFLTFIGQFYQENAHFIPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           +L+  + ++ S+  I   +       IT P++GEK+K+++ A  NA              
Sbjct: 306 VLIPADIDQESVKAIVPTR-------ITQPQRGEKKKLVDLAGKNAKISLTEKFELIQRK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    +   +P  P RIE +DNS+IMG + V  MVV  +    K +YRK+ + 
Sbjct: 359 EERTIGAIDKLGQAMNIP-KPIRIEAFDNSNIMGTNPVSAMVVFVDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+++++K                   PD++I+DGGKGQ+  
Sbjct: 418 T--VVGPDDYASMREVIYRRYARVLKEN--------------LPLPDLIIIDGGKGQVDV 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I I  +AK  +     E  F    + + L       + +QR++DE H
Sbjct: 462 AKDVLDN-QLGLDIPIAGLAKNDQHKTS-ELLFGSPLQVIPLPRNSAEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD+I G+GP RK+ LL+ F ++K I  ++ E L  + G+ +
Sbjct: 520 RFAITFHRQLRSKNSFASRLDDIAGLGPKRKKELLKQFKSLKKIEEATIEELQQV-GLPR 578

Query: 598 KIACKIYNHFHKNTS 612
            +A  +Y   H+  +
Sbjct: 579 PVAETLYQKLHEQKA 593


>gi|291460316|ref|ZP_06599706.1| excinuclease ABC subunit C [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417071|gb|EFE90790.1| excinuclease ABC subunit C [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 632

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 197/624 (31%), Positives = 316/624 (50%), Gaps = 19/624 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M      ++YVGKA  L+ R+K Y   +   + +I  M+S +    +
Sbjct: 14  ELKKLPALPGVYLMHGPKDEIIYVGKAKVLKNRVKQYFQKSYRKSVKIQQMVSLVERFEY 73

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +E+EAL+LE+N+IK  KPR+N LL+DDK++PYI  +     P +   R     +  
Sbjct: 74  IVVDSELEALILESNLIKEYKPRYNTLLKDDKNYPYIAFSLGELFPRVRAVRRRKNDRSR 133

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+AS++ V + I  L+++F +R+C       +   RPCL + + +C GPC G  S E
Sbjct: 134 YFGPYASMEQVNEVIELLRKSFRIRNCNKVFTEDKRLPRPCLYYDLHQCDGPCIGRQSRE 193

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y+  V  A  F++G   ++ ++++R M++A+   D+E+A+  RD + ++  +Q+     
Sbjct: 194 DYLAQVSRALDFMNGKYEDIVKELSRRMSRASDNLDFETAMELRDLIRSIEAVQSRQKIT 253

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D   +    +   IQ  F   G+  G    F+  D E ++A++LS FL+Q+Y 
Sbjct: 254 AYDGEDRDIIGMRREGSDCVIQIFFVRDGKIIGRDHQFIDIDPEESDAELLSGFLKQYYN 313

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
             P  P  I +  E  E  LL        G KV I  P  G K K++E A++NA    +R
Sbjct: 314 GTPFIPREIFVQTELPEAELLSAWLSGMKGRKVNIRTPLIGGKEKLVELAVMNAGILMNR 373

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +    K   +   P+RIE YD S+  G   VG MVV  +     N
Sbjct: 374 YREKYREEEKKLGRAVLTLQKLLEMEKPPRRIESYDISNTSGALNVGSMVVYIDGKAKPN 433

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVIL 469
            YRKF +    V+  DD A MR +L RRFS  ++  E+N          SF  +P+++++
Sbjct: 434 DYRKFRIRS--VQGPDDYASMREMLTRRFSHGLREMEQNAERGRNNALGSFSVFPELILM 491

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+S  + VL +L +   IT+  + K            + +G  L L     +   
Sbjct: 492 DGGKGQVSVCEEVLSELGIS-SITVCGMVKDEHHRTRA---LLYQGRELPLPESGDVFRL 547

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + R++DE HRFAI  HR  R+K    S LDEI GIG +RK+ L++ F  +  I  +  ++
Sbjct: 548 LTRIQDEVHRFAIEYHRSLREKTQIRSLLDEIPGIGAVRKKALMKEFKDIDHIKTADIKS 607

Query: 589 LASIEGISKKIACKIYNHFHKNTS 612
           LA+   +    A ++Y  F   ++
Sbjct: 608 LAACPSMDIHAAERVYRFFRGEST 631


>gi|229918339|ref|YP_002886985.1| excinuclease ABC, C subunit [Exiguobacterium sp. AT1b]
 gi|229469768|gb|ACQ71540.1| excinuclease ABC, C subunit [Exiguobacterium sp. AT1b]
          Length = 594

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 184/617 (29%), Positives = 305/617 (49%), Gaps = 45/617 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y   +  G V+YVGKA NL+ R++SY     H  +   ++++I +  + VT +
Sbjct: 14  LPDEPGCYLHKNEYGEVIYVGKAKNLKNRVRSYFTGA-HDIKTMRLVAEIRDFEYIVTAS 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E+EALLLE  +IK+  P++NI L+DDK++PYI IT+    P L   R      G YFGP+
Sbjct: 73  ELEALLLEMTLIKKHDPKYNIRLKDDKTYPYIKITN-EPYPRLLTTRKLKKDGGHYFGPY 131

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +T   L + + LR C         + CL + I +C GPC   + ++   E V 
Sbjct: 132 PNAYAANETKRLLDKLYPLRKCQPMP----KKLCLYYHIGQCLGPCELAVDTDSQKEIVQ 187

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
           E ++FL+G       K+   M +A     +E A   RD++ A+  I N  +         
Sbjct: 188 EIRRFLNGETSETLTKLNVEMGRAAEDMQFERAAELRDQIRAVESIMNKQNMITADPTAR 247

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    ++   C+Q  +   G+             E +  + L  F+ QFY     P+ 
Sbjct: 248 DVFGYTLDRGWMCVQVFYMRGGKMIERDVSLFPMHGEPS--EELESFIVQFYEQNVVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           IL+ E      L +    K       +  PK+G K+++++ A  NA    +         
Sbjct: 306 ILVPETVRLDLLNDAIGTK-------VMQPKRGAKKQLLDLATKNATIALNEKFELLARD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E    + +++  +   +P++  R++I DN++I G  AV  +VV  +   +K +YRK+ + 
Sbjct: 359 EERTLLAMRELGEAIGIPNLS-RVDIIDNANIQGADAVSALVVFEDGKPLKKEYRKYKIR 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RRF +L+  ++ L              PD++++DGG GQL+A
Sbjct: 418 T--VQGPDDYETMREVVRRRFRRLLTEDKRL--------------PDLLLIDGGIGQLNA 461

Query: 479 AQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A   +  +  ++  + + S+ K   R    +  F + G  + L+ R    Y +QR++DE 
Sbjct: 462 ALDVIQNEFGLD--LPVGSL-KKDDRHRTSQLLFGEGGGVVELHPRSSAFYLLQRMQDEV 518

Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR  R KK   S LDEI G+GP R++ L++ FG++K I  +S E L    G+ 
Sbjct: 519 HRFAITFHRSLRTKKMTKSILDEIPGVGPKRRQQLIRHFGSMKQIRLASLEQLKEA-GLP 577

Query: 597 KKIACKIYNHFHKNTSH 613
           +K+A  +  + H+ T  
Sbjct: 578 EKLAETVLQYVHEETDE 594


>gi|119483248|ref|ZP_01618662.1| Excinuclease ABC, C subunit [Lyngbya sp. PCC 8106]
 gi|119458015|gb|EAW39137.1| Excinuclease ABC, C subunit [Lyngbya sp. PCC 8106]
          Length = 649

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 197/638 (30%), Positives = 300/638 (47%), Gaps = 45/638 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY M D +  +LY+GK+  L+ R++SY    N H+ RI  MI Q+  I F VT
Sbjct: 22  EIPSVPGVYLMRDHSDNILYIGKSKKLRSRVRSYFRDYNRHSPRIAMMIQQVAEIEFIVT 81

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121
            TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT   + P ++  R       +  Y
Sbjct: 82  DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEEYPRIFITRKRRLGKSKDRY 141

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     +  T++ +++ F LR     +F  + RPCL + I RC G C   IS E Y 
Sbjct: 142 YGPYVDTRLLRSTLHLVKQIFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQQFISPEDYH 199

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + +      G    L   + + M  A    ++E A   RD++  +  + +        
Sbjct: 200 QTMQKVAMIFQGRTGELLNSLTQQMATAAENLNFEIAAKIRDQIQGVQSLNDDQKVSLPD 259

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-------------STNAQ 284
                D  +L  N   ACIQ      G+  G   F  + +                T ++
Sbjct: 260 DRVSRDAIALAANDKQACIQLFQIRAGKLVGRLGFQAEVEQFQLEGLENDLNATLETESE 319

Query: 285 IL---SYFLRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKR 338
                   L   Y        P  IL+  E  E S+L     +  G KV I  P++  K 
Sbjct: 320 FGAILQRVLEDHYQTVDAVEIPGEILVQYELPEESILANWLSEYKGRKVTIINPQRQTKA 379

Query: 339 KIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398
           ++IE    NA     +       +   L+D  +   LP IP RIE YD SHI G  AV  
Sbjct: 380 ELIELVERNAGYELERVQKFSDRNNQALQDLAEILDLPDIPHRIEGYDISHIQGSDAVAS 439

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456
            V+  +      QYR + +   +V     DD A +  V+ RRF                 
Sbjct: 440 KVMFIDGLPANQQYRHYKIRNPEVHAGRSDDFASLAEVIGRRFRDY---------PTLTP 490

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
           E      PD++++DGGKGQLSA   VL +LN+   + ++S+AK  +     E F   +  
Sbjct: 491 EKIAADKPDLIMIDGGKGQLSAVVKVLSELNLLEDLRVVSLAKQRE-----EIFLPGESF 545

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSF 575
            L  +   P +  ++RLRDEAHRFA++ HR++R  +   S LDEI G+G  R++ LL  F
Sbjct: 546 PLETDSEQPGVQLLRRLRDEAHRFAVSFHRQKRSQRLKRSRLDEIPGLGYRRQKQLLAHF 605

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            ++  +  ++PE +  + GI  K+A  IYN+FH  +  
Sbjct: 606 RSIDYLRIATPEQITEVPGIGFKLAQHIYNYFHPTSDE 643


>gi|164686654|ref|ZP_02210682.1| hypothetical protein CLOBAR_00249 [Clostridium bartlettii DSM
           16795]
 gi|164604044|gb|EDQ97509.1| hypothetical protein CLOBAR_00249 [Clostridium bartlettii DSM
           16795]
          Length = 604

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 204/624 (32%), Positives = 322/624 (51%), Gaps = 40/624 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +PE PGVY M +   +++YVGKA +L+ R++ Y  S+ NH+ ++  M+S I +  +
Sbjct: 7   QLKLLPEEPGVYLMKNKNDKIIYVGKAVSLKNRVRQYFQSSKNHSSKVKSMVSNIASFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+ +P++N+LLRDDK++PYI +T     P + K R     +  
Sbjct: 67  IITDSELEALILECNLIKQYRPKYNVLLRDDKTYPYIKVTVNEDFPRIMKVRRVLKDKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+ +V AV  T+  ++  + +R+C   +    R+  RPCL + IK+C GPCTG +S 
Sbjct: 127 YFGPYTNVGAVNDTLEIIRNIYPIRNCNVDIPKAIRNSARPCLNYHIKKCVGPCTGNVSK 186

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E+Y + + E   FLSG    L E +   MN   ++  +E A ++RD++  L  I      
Sbjct: 187 EEYRKMIDEIILFLSGKEETLIEILKEKMNSCAMEFKFEDAAMYRDKIKNLEEIMEKQKI 246

Query: 238 IYN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
             +      D  +L   +  AC+Q  F    +  G   F L+    S +  IL  F++QF
Sbjct: 247 DASNSDVNQDVIALARTEEEACVQVFFMRNSKIIGREHFILEGVEGSKSDSILGSFVKQF 306

Query: 294 YTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS- 351
           Y ++   P+ I++ EE E+  +LE     + G KV IT+P++GEK+ +      NA    
Sbjct: 307 YMEQEYIPKEIIIDEELEDRYILEQWLSDKKGSKVTITIPQKGEKKGLALMVRKNAMEYL 366

Query: 352 ---HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
                            L   T+   L  +PKRIE YD S+I G  ++G MVV  +    
Sbjct: 367 NKFSHLNKQKYEKSIGALTQLTELLKLETMPKRIEAYDISNIQGVDSIGSMVVFTDGKKD 426

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K +YR+F +    +   DD   M  +L RR                       + PD+++
Sbjct: 427 KKEYRRFKIKT--IVGPDDYGSMAEILSRRVKH-------------------KNLPDLIL 465

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           LDGGKGQ+SA Q VL + N+  +I +  + K  K         V K + +VL+    +  
Sbjct: 466 LDGGKGQVSAVQNVLDQNNL--QIPLWGMFKDDKHRTKG---LVNKSQEIVLDRTTNLYR 520

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           F+  +++E H +AIT HR  RKK+   S LD+I GIG  RK+ LL  F  ++ I  ++ E
Sbjct: 521 FVASIQEEVHNYAITYHRSLRKKSLTKSVLDDIPGIGEKRKKNLLSHFKNIESIKAATFE 580

Query: 588 TLASIEGISKKIACKIYNHFHKNT 611
            L  +E I+K  A  IYN+F    
Sbjct: 581 QLLEVESINKTAAENIYNYFKSEE 604


>gi|56964432|ref|YP_176163.1| excinuclease ABC subunit C [Bacillus clausii KSM-K16]
 gi|81365726|sp|Q5WEK8|UVRC_BACSK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56910675|dbj|BAD65202.1| excinuclease ABC subunit C UrvC [Bacillus clausii KSM-K16]
          Length = 594

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 177/617 (28%), Positives = 298/617 (48%), Gaps = 42/617 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   ++ + +   ++ +I +  + VT +
Sbjct: 12  LPDKPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGSHDS-KTQRLVGEICDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE  +IK+  P++N+LL+DDK++PYI IT+  + P L   R        YFGP+
Sbjct: 71  NIEALILELTLIKKHDPKYNVLLKDDKTYPYIKITN-ERHPRLLITRKVKKDGAKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +T   L R + LR C     +     CL + I +C  PC  E+S E     V+
Sbjct: 130 PNAGAATETKKLLDRLYPLRKCR----KMPDSVCLYYHIGQCLAPCVYEVSEETNQTMVN 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E  KFL  G+ ++KE++   M +A    D+E A   RD +A +  +       +      
Sbjct: 186 EITKFLKNGHSDIKEQLRERMEKAAEDLDFERAKELRDTIAQMEKVMEKQKMAFADKTDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             E++   +          +   P+ 
Sbjct: 246 DVFGFSYDKGWMCVQVFFIRQGRLIERDVSIFPFYQEASEELLTFIARFYLEKNHIKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           I ++E  ++  L E+   +       +T PK+G+K+ +++ A  NA        +     
Sbjct: 306 IFVAESVDKQLLKELLETR-------VTQPKRGQKKALLDLAEENAALALKEKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +     RIE +DNS+I G   V  MVV       + +YRK+ + 
Sbjct: 359 EQRTVKAVERLGEAIGINAP-YRIEAFDNSNIQGVDPVSAMVVFVNGVPQRKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+ +L+K +  L              PD++++DGG GQ++A
Sbjct: 418 T--VEGPDDYGSMREVVRRRYVRLLKEKRPL--------------PDLIVIDGGAGQIAA 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ V++   +   I +  +AK  K               + L       Y +QR++DE H
Sbjct: 462 AKEVIED-ELGQAIPVCGLAKDDKHRTSQ-LLMGSPPVVVPLQRDSHEFYLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K+   S LD+I G+G  R++ LL++FG+VK I  +S E L+    +  
Sbjct: 520 RFAITFHRQTRAKSFLQSALDDIPGVGEKRRKALLKTFGSVKKIKEASIEDLSK--HVPT 577

Query: 598 KIACKIYNHFHKNTSHT 614
           K+A  I++  +KN  + 
Sbjct: 578 KLAETIHHTLNKNKPNA 594


>gi|156742924|ref|YP_001433053.1| excinuclease ABC subunit C [Roseiflexus castenholzii DSM 13941]
 gi|156234252|gb|ABU59035.1| excinuclease ABC, C subunit [Roseiflexus castenholzii DSM 13941]
          Length = 665

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 189/648 (29%), Positives = 320/648 (49%), Gaps = 50/648 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTC 64
           +P  PGVY   +  G+++Y+GK+  L+ R++SY    +  + +   +++QI + +  VT 
Sbjct: 22  VPLAPGVYLWKNAQGKIIYIGKSKRLRDRMRSYFARTDDPYGKTARLVAQIADFQVIVTS 81

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFG 123
            E+EALLLE  +IK+ +PRFN+LL+DDKS+PYI +T     P +   R+        YFG
Sbjct: 82  NELEALLLEMTLIKQHRPRFNVLLKDDKSYPYIKVTLHEPWPRIVATRNPRWEEGARYFG 141

Query: 124 PFASVDAVEKTINSLQRTFFL------RSCADSVFRHRTRPCLLFQIKRCSGPCTGE-IS 176
           P++S  AV +T++ L R F             +  R   +PCL + IKRC GPC    ++
Sbjct: 142 PYSSAGAVYRTLDQLNRLFAFRPPSRCPDDKFNRHRRLGKPCLYYDIKRCLGPCVPGLVN 201

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
              Y   V    +FL G +  + + + R M +A  + D+E A   RD +  +  I     
Sbjct: 202 QNDYRATVESVCRFLEGKSDLVAKILRRQMEEAAERLDFERAARLRDSIRDIELIGQRQQ 261

Query: 237 SIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            + +     D   L   + +A +Q      G+     +F L+      +  +L+ FL QF
Sbjct: 262 VLRHDDADQDVIGLAREEGMAVVQVLRIRAGKLISAESFPLQNAEGERDESLLASFLTQF 321

Query: 294 YT-DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS- 351
           Y      P  +LL    ++ +++E    ++ G KV +  P++GEKR+++E A  NA +  
Sbjct: 322 YDAAAELPATLLLPAPLDDLAIIEQWLAQKAGRKVALHTPQRGEKRRLVELAEQNARQKL 381

Query: 352 ---HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
                Q L++E      L +      L  +P RIE +D S+  G  +VG MVV       
Sbjct: 382 DELRLQWLNSEQRAVAGLTEVRDLLGLSALPTRIECFDVSNTQGSHSVGAMVVFEHGEPK 441

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI------------------------- 443
           K++YRKF +    V+  +D A ++ VL RRF +                           
Sbjct: 442 KSRYRKFRIKT--VEGANDVASIQEVLRRRFRRAAMVIGEEEQPADERVVNGQTDAAEQE 499

Query: 444 ---KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
              K +   +    +++ ++   PD++++DGG GQ++ A  VL+ L  E  I ++ + KG
Sbjct: 500 DGEKTDAPGSQSDLERQETWAELPDLILIDGGIGQVNGALHVLRDLCFE-HIPVVGVVKG 558

Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDE 559
           P R    +       + +VL      L  I+R+ +EA RFA   HRK R K+   S L+E
Sbjct: 559 PNRDR-FDLLIPGASDLIVLERESAALRLIRRIDEEADRFAKDYHRKLRSKSATASRLEE 617

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I GIGP R++LLL+ FG++  I  ++ + +A++ G+++K A ++ +  
Sbjct: 618 IPGIGPKRRQLLLKRFGSLDGIRNATVDEIAAVPGMTRKAAEELKSLL 665


>gi|315225527|ref|ZP_07867337.1| excision endonuclease subunit UvrC [Capnocytophaga ochracea F0287]
 gi|314944471|gb|EFS96510.1| excision endonuclease subunit UvrC [Capnocytophaga ochracea F0287]
          Length = 596

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 182/626 (29%), Positives = 301/626 (48%), Gaps = 53/626 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVYQ  D    ++YVGKA NL+KR+ SY    +   +   ++ +I  I  
Sbjct: 7   IQLQTLPTNPGVYQFYDATDTLIYVGKAVNLKKRVSSYFQKEHDNAKTRILVRKIVRIEH 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ +PR+NILL+DDKS+P+I +  K + P ++  R        
Sbjct: 67  IVVATESDALLLENNLIKKYQPRYNILLKDDKSYPWICV-KKERFPRVFSTRRVVKDGSL 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S+  V   ++ ++  F LR+C       ++  H+ + CL + +K C GPC G  
Sbjct: 126 YFGPYTSMKTVHTLLDLIKELFALRNCNYDLSPQNIANHKFKVCLEYHLKNCKGPCEGYQ 185

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           +   Y + + +  + L G   +   +    M     +  +E A + + ++ +L + Q  +
Sbjct: 186 NEADYNQNIQQIVEILKGNFKDALHQFKEEMMALASEMRFEEAHLIKQKIQSLENYQAKS 245

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D FS+  ++    +      +G      T  +K   E T+ ++L Y +  
Sbjct: 246 TIVSSKISNVDVFSIVSDEEYGYVNFLQVAYGAIVRAHTLEIKKKLEETDRELLEYAIID 305

Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                    + I++  E   +              ++ T+PK GEK+++++ ++ NA   
Sbjct: 306 IRERFFSNSKEIIVPFEVTLSE------------GLQATIPKAGEKKQLLDLSMRNAKHF 353

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
              +         E     +L    +   L   P  IE +DNS+I G + V   VV    
Sbjct: 354 CQDRFKQEKIVDPERHTNRVLTQMQRDLHLSVPPVHIECFDNSNIQGTNPVSACVVFKNA 413

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YR FN+    V+  +D A M   + RR+ +L+  E+ L              P 
Sbjct: 414 KPSKKDYRHFNVKT--VEGPNDFASMEEAVYRRYRRLLDEEQPL--------------PQ 457

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++++DGGKGQLS+A   L++L +  +I II IAK  +     E +F +    L L+ R  
Sbjct: 458 LIVIDGGKGQLSSALKALEQLELRGKIAIIGIAKRLE-----EIYFPEDSIPLYLDKRSE 512

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LRDEAHRF IT HRK+R K+   S LD + GIG   K +LLQ F +VK +  +
Sbjct: 513 TLRVIQQLRDEAHRFGITFHRKKRSKSAIVSELDGVEGIGEKTKEVLLQHFKSVKRVREA 572

Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610
           + E L  + G   K   K+Y +F  +
Sbjct: 573 TLEELTQVAGFRGK---KVYEYFQSH 595


>gi|148657260|ref|YP_001277465.1| excinuclease ABC subunit C [Roseiflexus sp. RS-1]
 gi|148569370|gb|ABQ91515.1| Excinuclease ABC subunit C [Roseiflexus sp. RS-1]
          Length = 669

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 192/652 (29%), Positives = 323/652 (49%), Gaps = 54/652 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTC 64
           +P  PGVY   +  G+++YVGK+  L+ R++SY +     + +   ++ QI + +  VT 
Sbjct: 22  VPLAPGVYLWKNAQGKIIYVGKSKRLRDRMRSYFNQTGDPYGKTARLVEQIADFQVIVTS 81

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFG 123
           TE+EALLLE  +IK+ +PRFN+LL+DDKS+PYI +T     P ++  R+        YFG
Sbjct: 82  TELEALLLEMTLIKQHRPRFNVLLKDDKSYPYIKVTLHETWPRIFATRNPRWEEGARYFG 141

Query: 124 PFASVDAVEKTINSLQRTFFL------RSCADSVFRHRTRPCLLFQIKRCSGPCTGE-IS 176
           P++S  AV +T++ L R F             +  R   +PCL + IKRC GPC    ++
Sbjct: 142 PYSSAGAVYRTLDQLNRLFAFRPPSRCPDDKFNRHRRMGKPCLYYDIKRCLGPCVPGLVN 201

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            E+Y   +    +FL G +  + + + R M +A  + D+E A   RD +  +  I     
Sbjct: 202 QEEYRATIESVCRFLEGKSDLVVKTLRRQMEEAAERLDFERAARLRDSIRDIELISQRQQ 261

Query: 237 SIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            + +     D   L   + +A +Q      G+     +F L+      N  +L+ FL QF
Sbjct: 262 VLRHDDADQDVIGLAREEGMAVVQVLCIRAGKLISAESFPLQNAEGERNEDLLASFLTQF 321

Query: 294 YT-DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS- 351
           Y      P  +LL    +E +++E    ++ G K+ +  P++GEKR+++E A  NA +  
Sbjct: 322 YDTAAELPAALLLPMPLDEPAVIEQWLAQKAGRKITLHTPQRGEKRRLVELAEQNARQKL 381

Query: 352 ---HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
                Q L++E      L +      L  +P RIE +D S+I G  AVG MVV       
Sbjct: 382 EELRLQWLNSEQRAVAGLSEVRDLLGLSALPTRIECFDVSNIQGSHAVGAMVVFERGEPK 441

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI------------------------- 443
           K++YRKF +    V+  +D A ++ +L RRF +                           
Sbjct: 442 KSRYRKFRIKT--VQGANDVASIQEILRRRFRRAAMVIGEEEQQSEAQRMNGSVNGPAEA 499

Query: 444 -------KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496
                  K +   +    +++ ++   PD++++DGG GQL+ A   L+ L  +  I ++ 
Sbjct: 500 DDQEEAEKTDTPGSHADIERQETWAELPDLILIDGGVGQLNGAIQALRDLRFD-HIPVVG 558

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYS 555
           + KGP R    +       + +VL      L  I+ + +EA RFA   HRK R K+   S
Sbjct: 559 VVKGPNRDR-FDLLLPGASDVIVLERDSAALRLIRMIDEEADRFAKDYHRKLRSKSATSS 617

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+EI GIGP R++LLL+ FG+++ I  ++ + LA++ G+++K A ++ +  
Sbjct: 618 RLEEIPGIGPKRRQLLLKRFGSLEGIRNATVDELAAVPGMTRKAAEELKSML 669


>gi|213963476|ref|ZP_03391730.1| excinuclease ABC, C subunit [Capnocytophaga sputigena Capno]
 gi|213953884|gb|EEB65212.1| excinuclease ABC, C subunit [Capnocytophaga sputigena Capno]
          Length = 593

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 186/624 (29%), Positives = 299/624 (47%), Gaps = 53/624 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVYQ  D +  ++YVGKA NL+KR+ SY    +   +   ++ +I  I  
Sbjct: 5   IQLQTLPNNPGVYQFYDASDTLIYVGKAVNLKKRVSSYFQKEHDNAKTRILVRKIVRIEH 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ +PR+NILL+DDKS+P+I +  K + P ++  R        
Sbjct: 65  IVVATESDALLLENNLIKKYQPRYNILLKDDKSYPWICV-KKERFPRVFSTRRVVKDGSL 123

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S+  V   ++ ++  F LR+C       +V  H+ + CL + +K C GPC G  
Sbjct: 124 YFGPYTSMKTVHTLLDLIKELFPLRNCNYDLSPQNVANHKFKVCLEYHLKNCKGPCEGYQ 183

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S + Y   + +  + L G      +     M     +  +E A + + ++ +L + Q  +
Sbjct: 184 SEQDYNNNIQQIVEILKGNFKEALKHFKEEMMALAAEMRFEEAHLIKQKIQSLENYQAKS 243

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                    +D FS+  ++    +      +G      T  +K   + T+ ++L Y +  
Sbjct: 244 TIVSSKITNVDVFSIVSDEEYGYVNFLQVAYGAIVRAHTLEIKKKLDETDRELLEYAIID 303

Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                    + I++  +   +              ++ T+PK GEK++++E +L NA   
Sbjct: 304 IRERFFSVSKEIIVPFDVTLSD------------GLQATIPKAGEKKQLLELSLRNAKHF 351

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
              +         E     IL    +   L   P  IE +DNS+I G + V   VV    
Sbjct: 352 RQDRFKQEKIVDPERHTNRILTQMQRDLHLSVPPVHIECFDNSNIQGTNPVSACVVFKNA 411

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YR FN+    V+  +D A M   + RR+ +L+  ++ L              P 
Sbjct: 412 KPSKKDYRHFNVKT--VEGPNDFASMEEAVYRRYRRLLDEQQPL--------------PQ 455

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQLS+A   L++L +  +I II IAK  +     E +F +    L L+ R  
Sbjct: 456 LIIIDGGKGQLSSALKALEQLELRGKIAIIGIAKRLE-----EIYFPEDSVPLYLDKRSE 510

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LRDEAHRF IT HR++R K+   S LD + GIG   K  LLQ F +VK I  +
Sbjct: 511 TLRVIQQLRDEAHRFGITFHRQKRSKSAIVSELDGVGGIGDKTKETLLQHFKSVKRIREA 570

Query: 585 SPETLASIEGISKKIACKIYNHFH 608
           + E L  + G   K   K+Y +FH
Sbjct: 571 TLEELTKVVGFRGK---KVYEYFH 591


>gi|56752158|ref|YP_172859.1| excinuclease ABC subunit C [Synechococcus elongatus PCC 6301]
 gi|81300754|ref|YP_400962.1| excinuclease ABC subunit C [Synechococcus elongatus PCC 7942]
 gi|81561473|sp|Q5N031|UVRC_SYNP6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367852|sp|Q31LU4|UVRC_SYNE7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56687117|dbj|BAD80339.1| excinuclease ABC subunit C [Synechococcus elongatus PCC 6301]
 gi|81169635|gb|ABB57975.1| Excinuclease ABC subunit C [Synechococcus elongatus PCC 7942]
          Length = 643

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 193/629 (30%), Positives = 304/629 (48%), Gaps = 29/629 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY M D + R+LY+GK+  L+ R++SY         RI  M+ Q+  I   VT
Sbjct: 22  ELPAEPGVYFMRDASDRILYIGKSKKLRSRVRSYFRDLERLNPRINLMVRQVCEIEIIVT 81

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121
            TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R       +  Y
Sbjct: 82  DTEAEALALEANLIKQHQPHFNVLLKDDKKYPYLCITWSDDYPRIFITRKRRLGNSRDRY 141

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     +  T+  ++R F LR     +F+ RT  CL + I RC G C   I  + Y 
Sbjct: 142 YGPYVDTRLLRHTLFLVKRLFPLRQRPQPLFKDRT--CLNYDIGRCPGVCQSLIRPDDYR 199

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + +      G +  L E +   M QA    ++E A   RD++  L  +          
Sbjct: 200 KTLQKVAMIFQGRSSELVELLEAQMLQAAENLEFEKAAKIRDQIRGLEGLGAEQKVQLPD 259

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  +L  ++  ACIQ      G+  G   F     S  + A I    L + Y   
Sbjct: 260 DRISRDAIALAMDEQHACIQLFQIRAGKLVGRLGFVADAQSG-SAAAIAQRVLEEHYASV 318

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ +L+  +  E  LLE+   ++ G KV+I  P++  K  +I     NA     +
Sbjct: 319 DSVEIPQEVLVQHDLPEAELLEVWLSERRGRKVEILSPQRQIKADLIAMVERNAEYELAR 378

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +   H   L D      LP +P+RIE YD SHI G  AV   VV  +    K  YR+
Sbjct: 379 TQQSAERHTASLIDLADLLDLPELPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHYRR 438

Query: 415 FNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKK--------QEYSFPSWP 464
           + +   +V+     D A +  VL RRF +  + +                 +      +P
Sbjct: 439 YKIRNPEVRAGHSDDFASLAEVLHRRFRKFAEAKARGESLAPSEQRQGSLLRPDDLADFP 498

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D+V++DGGKGQLSA   VL+ LN+   + + S+AK  +     E F     + L  +   
Sbjct: 499 DLVMIDGGKGQLSAVVEVLRNLNLLEDVKLCSLAKKRE-----EIFLPGASDPLPTDAEQ 553

Query: 525 PILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           P +  ++RLRDEAHRFA++ HR++R ++   S LD+I G+G  R++ LL  F ++  +  
Sbjct: 554 PGVQLLRRLRDEAHRFAVSFHRQKRTERMRRSRLDDIPGLGHKRQKELLAHFRSIDYLRL 613

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTS 612
           ++PE +A + GI   +A +I+ +FH + +
Sbjct: 614 ATPEQIAEVPGIGAVLAQQIWGYFHPSET 642


>gi|256820113|ref|YP_003141392.1| excinuclease ABC subunit C [Capnocytophaga ochracea DSM 7271]
 gi|256581696|gb|ACU92831.1| excinuclease ABC, C subunit [Capnocytophaga ochracea DSM 7271]
          Length = 596

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 184/626 (29%), Positives = 301/626 (48%), Gaps = 53/626 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVYQ  D    ++YVGKA NL+KR+ SY    + + +   ++ +I  I  
Sbjct: 7   IQLQTLPNNPGVYQFYDATDTLIYVGKAVNLKKRVSSYFQKEHDSAKTRILVRKIVRIEH 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ +PR+NILL+DDKS+P+I +  K + P ++  R        
Sbjct: 67  IVVATESDALLLENNLIKKYQPRYNILLKDDKSYPWICV-KKERFPRVFSTRRVVKDGSL 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S+  V   ++ ++  F LR+C       ++  H+ + CL + +K C GPC G  
Sbjct: 126 YFGPYTSMKTVHTLLDLIKELFALRNCNYDLSPQNIANHKFKVCLEYHLKNCKGPCEGYQ 185

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           +   Y + + +  + L G   +   +    M     +  +E A + + ++ +L + Q  +
Sbjct: 186 NEADYNQNIQQIVEILKGNFKDALHQFKEEMMALASEMRFEEAHLIKQKIQSLENYQAKS 245

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D FS+  ++    +      +G      T  +K   E T+ ++L Y +  
Sbjct: 246 TIVSSKISNVDVFSIVSDEEYGYVNFLQVAYGAIVRAHTLEIKKKLEETDRELLEYAIID 305

Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                    + I++  E   +              ++ T+PK GEK+++++ ++ NA   
Sbjct: 306 IRERFFSNSKEIIVPFEVTLSE------------GLQATIPKAGEKKQLLDLSMRNAKHF 353

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
              +         E     IL    +   L   P  IE +DNS+I G + V   VV    
Sbjct: 354 RQDRFKQEKIVDPERHTNRILTQMQRDLHLSVPPVHIECFDNSNIQGTNPVSACVVFKNA 413

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YR FN+    V+  +D A M   + RR+ +L+  E+ L              P 
Sbjct: 414 KPSKKDYRHFNVKT--VEGPNDFASMEEAVYRRYRRLLDEEQPL--------------PQ 457

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++++DGGKGQLS+A   L++L +  +I II IAK  +     E +F +    L L+ R  
Sbjct: 458 LIVIDGGKGQLSSALKALEQLELRGKIAIIGIAKRLE-----EIYFPEDSIPLYLDKRSE 512

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LRDEAHRF IT HRK+R K+   S LD + GIG   K  LLQ F +VK I  +
Sbjct: 513 TLRVIQQLRDEAHRFGITFHRKKRSKSAIVSELDGVEGIGEKTKETLLQHFKSVKRIREA 572

Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610
           + E L  + G   K   K+Y +F  +
Sbjct: 573 TLEELTQVAGFRGK---KVYEYFQSH 595


>gi|315604230|ref|ZP_07879296.1| excision endonuclease subunit UvrC [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313936|gb|EFU61987.1| excision endonuclease subunit UvrC [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 671

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 196/666 (29%), Positives = 325/666 (48%), Gaps = 61/666 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y     N   R   M++  + +++TV 
Sbjct: 13  DIPTSPGVYRFSDPQGRVIYVGKAKNLRNRLTNYFQDLANLHPRTQQMVTTASRVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EAL LE   IK   PRFN++ +DDKS+PY+ ++   + P +   R+       YFG
Sbjct: 73  RSEIEALTLEFTWIKEFNPRFNVVFKDDKSYPYLAVSMGERYPRVQVTRERKRAGSRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+  V A+ +TI+ L R F +RSC+  VF   + + RPCLL  I +CS PC   +++E++
Sbjct: 133 PYTQVWAIRETIDQLLRVFPVRSCSAGVFARAKAQGRPCLLGYIDKCSAPCVERVTAEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E      +F+ G    +   +   M +A+   D+E A   RD +AAL  +   N  + +
Sbjct: 193 RELAEGLCRFMQGRTGPVIRDLETQMREASANLDFERAAKLRDDVAALRTVLERNAVVLD 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L  +   A +       G+ RGT  + ++    + +A ++S  L Q Y+  
Sbjct: 253 DGADADVFALVSDDLDAAVHVFHVRGGRIRGTRGWVIERVDGAGDAALMSRLLEQVYSSA 312

Query: 298 P---------------------------CPENILLSEEAEETSLLEISFFKQYGYKVKIT 330
                                        P  +L+S   ++   +     +  G  V I 
Sbjct: 313 TEDEARGARETKAAAVSVDDVAHTPTSAIPREVLVSVAPDDMETISRWLGEARGASVAIN 372

Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYD 386
           VPK+G K ++++    NA ++ T   +       +    L+   +   LP  P RIE YD
Sbjct: 373 VPKRGPKAQLMDTVTDNARQALTLHRTRRAGDITARSKALEQLAENLDLPAAPLRIECYD 432

Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKN 445
            SH  G + V  MVV  +    K+ YR FN+   D K   DD + M  VL RRFS+L+  
Sbjct: 433 VSHTGGENQVASMVVFEDGMPRKDAYRTFNIRGTDGKGTPDDTSAMNEVLTRRFSRLLAE 492

Query: 446 EENLNFHPK--------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           E  +    +               +   F   PD+V++DGG  Q++AA+  L+ +  +  
Sbjct: 493 EAGIEGEDEDGVAYASGPIEAATGRPRRFSYRPDLVVVDGGLPQVNAARAALEAVGAD-- 550

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH-RKRRK 550
           + ++ +AK  +     E +       L+L      LY +Q LRDE+HRFAIT H ++R +
Sbjct: 551 VPVVGLAKRLE-----EVWIPGDEFPLILPRTSEALYLLQYLRDESHRFAITKHRKRRSR 605

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            +  S LD I G+GP R+  LL+ FG+VK +  ++P+ +A ++G+   +A +I++  H +
Sbjct: 606 ASRRSVLDSIPGLGPARQAALLKHFGSVKRLREATPDQIAHVKGVGALLARQIHDRLHTS 665

Query: 611 TSHTPT 616
           +    +
Sbjct: 666 SREETS 671


>gi|52081351|ref|YP_080142.1| excinuclease ABC subunit C [Bacillus licheniformis ATCC 14580]
 gi|52786728|ref|YP_092557.1| excinuclease ABC subunit C [Bacillus licheniformis ATCC 14580]
 gi|81384876|sp|Q65GF0|UVRC_BACLD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|52004562|gb|AAU24504.1| excinuclease ABC (subunit C) [Bacillus licheniformis ATCC 14580]
 gi|52349230|gb|AAU41864.1| UvrC [Bacillus licheniformis ATCC 14580]
          Length = 590

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 184/613 (30%), Positives = 302/613 (49%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQDTVIYVGKAKILKNRVRSYFSGS-HDAKTQRLVSEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDKS+P+I IT+  + P L   R     +G YFGP+
Sbjct: 71  NIEALILEMNLIKKYDPKYNVMLKDDKSYPFIKITN-ERHPKLVVTRKVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR CA    +   R CL + + +C  PC  ++S E   +   
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCA----KLPDRVCLYYHLGQCLAPCVYDVSEETNRQLTE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E  +FL GG + +K+++   M +A+    +E A   RD++A +         + N M   
Sbjct: 186 EITRFLKGGYNEVKKELEAKMLEASENLQFERAKEFRDQIAHIESTMEKQKMMLNDMVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 246 DVFAYSYDKGWMCVQVFFIRQGKLIERDVSMFPLYREADEEFLTFIGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           IL+ +  ++  + E+         V +  PK+G K+ ++  A  NA        +     
Sbjct: 306 ILVPDSVDKDMIEELL-------DVNVRQPKRGAKKDLLLLAHKNAKLALKEKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   K   + + P RIE +DNS+I G   V  MVV  +    K +YRK+ + 
Sbjct: 359 EERTIGAIEKLGKALDI-YTPYRIEAFDNSNIQGTDPVSAMVVFLDGKPHKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++K                   PD++++DGGKGQ+SA
Sbjct: 418 T--VEGPDDYGSMREVIRRRYTRVLKEN--------------LPLPDLILIDGGKGQVSA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L ++  + +  + K  K             E + L       Y +QR++DE 
Sbjct: 462 ALDVLENELGLD--VPVAGLVKDDKHRTSN-LLIGDPLEIVQLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+A+ S LD I G+G  RK+LLL+ FG+VK +  +S E +  + GI 
Sbjct: 519 HRFAISFHRQLRGKSAFQSVLDGIPGVGEQRKKLLLKHFGSVKKMKEASAEDIRKL-GIP 577

Query: 597 KKIACKIYNHFHK 609
            K A  I     K
Sbjct: 578 LKTAQLIEEALKK 590


>gi|148262448|ref|YP_001229154.1| excinuclease ABC subunit C [Geobacter uraniireducens Rf4]
 gi|146395948|gb|ABQ24581.1| Excinuclease ABC subunit C [Geobacter uraniireducens Rf4]
          Length = 636

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 196/622 (31%), Positives = 301/622 (48%), Gaps = 32/622 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
           + P  PG+Y M      VLYVGKA +L+KR++SY   S +  + I  +++++ +I   VT
Sbjct: 33  RFPSSPGIYIMKGADSTVLYVGKARDLKKRVRSYFATSGDSRYHIRFLMARVTDIEVIVT 92

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EAL+LE  +IK+ +P++N  LRDDK++  + +      P L   R  +     YFG
Sbjct: 93  DTEKEALILENTLIKKYRPKYNFNLRDDKTYFSLRMDMTEDFPRLTIIRKVTRDGARYFG 152

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P++S  A    +  L + F LR       R R RPCL FQ+++CS PC G IS E Y   
Sbjct: 153 PYSSASAARAVLKQLYKLFPLRHYPMESCRKRKRPCLFFQLRQCSAPCHGLISREDYTAL 212

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
              A  FL G    +       M  A   E YE A   RD + +++        +     
Sbjct: 213 AEGAGLFLKGKTREIVRIFKERMAAAAATEKYEEAARFRDLIRSITVTVEKQKMVTQGGD 272

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D    Y       +   F   G   G+  +  + + + +   I S+    +  D   P 
Sbjct: 273 SDIIGFYREGERLYLALLFIRGGNLMGSRNYSFRWEMDDSEG-IASFLNEYYNQDVFIPA 331

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILL     E + LE    ++ G KV ITVP +G + ++++ A  NA  S  +K     S
Sbjct: 332 EILLPLPIAEPAPLEELISEKRGKKVCITVPCRGVRLELVKLAGKNAETSAMEKKKALES 391

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            + +LK+  ++  LP +P+RIE YD S+I G   VG  V   +    K  YR++ +    
Sbjct: 392 CESVLKELQERLHLPELPRRIECYDISNIQGRVPVGSKVAFLDGKADKAHYRRYRIKG-- 449

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           V   DD AMMR VL RRF                QE     +PD++++DGG GQL+    
Sbjct: 450 VSQSDDFAMMREVLSRRFR---------------QEADRDDYPDLIVVDGGIGQLNVLTR 494

Query: 482 VLKKLNVENRITIISIAK-GPKRSAG--------MEKFFVKKGEALVLNMRDPILYFIQR 532
           VL++L+VE  +    +AK   +R  G           F   +   +VL      L  + R
Sbjct: 495 VLEELHVEG-VAAAGLAKSRVEREMGAAEISRSDERIFLPGRKNPVVLRQNSAPLLLLAR 553

Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDEAHRFAIT H+K R +    S L+ + G+G  R++ LL+ FG++K +  ++ E L  
Sbjct: 554 IRDEAHRFAITYHKKLRGRELLTSRLEGVPGVGTKRRKELLRHFGSLKKLETATLEELQK 613

Query: 592 IEGISKKIACKIYNHFHKNTSH 613
           +EGI++ +A  ++ HFH   + 
Sbjct: 614 VEGITRTVAEAVWEHFHPKGNQ 635


>gi|163754371|ref|ZP_02161493.1| excinuclease ABC, C subunit [Kordia algicida OT-1]
 gi|161325312|gb|EDP96639.1| excinuclease ABC, C subunit [Kordia algicida OT-1]
          Length = 596

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 186/625 (29%), Positives = 310/625 (49%), Gaps = 52/625 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVYQ  D  G++LYVGKA NL+KR+ SY   N+   +   ++ +I +I+ 
Sbjct: 7   LQLKTLPTNPGVYQYYDKDGKLLYVGKAKNLKKRVASYFTKNHEYGKTRVLVKKIVSIKH 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ +PR+N++L+DDKS+P+I I    + P ++  R        
Sbjct: 67  IVVATETDALLLENNLIKKYQPRYNVMLKDDKSYPWICI-KNERFPRVFPTRRVIKDGSE 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S+  V   ++ ++  + LR+C      + +   + + CL + +  C GPC G  
Sbjct: 126 YFGPYTSMKTVRTLLDLIKGLYPLRTCNYDLSQEKINAGKYKVCLEYHLGNCLGPCEGYQ 185

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           + + Y E +   ++ + G   +   +    M       ++E A   ++++  L + Q  +
Sbjct: 186 TIQSYDEQIVAIREIIKGNFKDSLNQFKAQMKTYAEAMEFEQAQKVKEKIDILENYQAKS 245

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D F++  +++   I       G    + T  +K   + T+ ++L   + +
Sbjct: 246 TVVNPKISNVDVFTIVSDESFGYINFLQLSLGSIIRSHTMEIKKKLDETDKELLELAITE 305

Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            +   K   + + +  E E               K KIT+PK G+K++I+E +L NA   
Sbjct: 306 IHQRFKTNSKELYVPFEVEVGE------------KFKITIPKLGDKKRILELSLRNAKYH 353

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
             ++         +     I+    K   L   P+ IE +DNS+I G + V   VV    
Sbjct: 354 RMERFKQIKLTDPDKHVNRIMAQMKKDLRLSEEPRHIECFDNSNIQGSNPVAACVVFKNG 413

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K +YR FN+    V   DD A M  V+ RR+ +L++ ++ L              P 
Sbjct: 414 KPSKKEYRHFNIKT--VVGPDDFASMEEVVYRRYKRLVEEKQPL--------------PQ 457

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++++DGGKGQLS+A   L  LN+  +I II IAK  +     E ++      L L+ +  
Sbjct: 458 LIVIDGGKGQLSSALKSLDALNLRGKIAIIGIAKRLE-----EIYYPGDSIPLYLDKKSE 512

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ LR+EAHRF IT HR +R  +   S L+ I GIG      LL+ F +VK IS +
Sbjct: 513 TLKIIQHLRNEAHRFGITFHRNKRSNSALNSELETIAGIGEKTIVELLKKFKSVKRISEA 572

Query: 585 SPETLASIEGISKKIACKIYNHFHK 609
           S E ++++ G S+  A KIYN+FHK
Sbjct: 573 SLEDISAVVGNSR--AKKIYNNFHK 595


>gi|298490257|ref|YP_003720434.1| excinuclease ABC subunit C ['Nostoc azollae' 0708]
 gi|298232175|gb|ADI63311.1| excinuclease ABC, C subunit ['Nostoc azollae' 0708]
          Length = 625

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 190/619 (30%), Positives = 305/619 (49%), Gaps = 29/619 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
           ++P   GVY M D    ++Y+GK+  L+ R++SY   + + T R+  M+  +  I F VT
Sbjct: 23  EIPPEAGVYLMRDGCDCIIYIGKSRKLRSRVRSYFRDSTSKTERMNTMVKLVTEIEFIVT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121
            TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT   + P ++  R       +  Y
Sbjct: 83  DTETEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEQYPRIFITRKRQLGKPKDKY 142

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     + + ++  +R F LR     +F  + RPCL + I RC G C   IS E+Y 
Sbjct: 143 YGPYTDSSLLREILHLCKRIFPLRQRPQPLF--KDRPCLNYDIGRCPGVCQKLISVEEYQ 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           +   +      G    L E +   M  A+ + ++E+A   RD++A L  +          
Sbjct: 201 KISQKIAMVFQGRTQELIEILTEQMQAASEELNFETAAKVRDQIAGLKSLTAQQKVSLPD 260

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-- 295
                D  +L  +   A IQ      GQ           +S++    IL   L + Y   
Sbjct: 261 DTVSQDAIALAADDQHAHIQLFQIRAGQLVAR--LAFIANSDAEPGAILQRVLEEHYQTA 318

Query: 296 -DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P  I +  E  +  +L     ++ G KV I  PK+  K ++IE    NA     +
Sbjct: 319 ENVEIPTEISVQHELPDGDILADVLTERKGKKVTIVAPKRQTKAELIEMVERNAQYELQR 378

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                 ++Q  L+D      L  +P RIE YD SHI G + V   VV  +    K  YR 
Sbjct: 379 MQKLGNANQQALQDLADILDLSELPHRIEGYDISHIQGTNVVASQVVFIDGLPAKQYYRH 438

Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           + +   D+     DD A +  V++RRF +  +N       P+        WPD+V++DGG
Sbjct: 439 YKIKDPDITIGHSDDFASLGEVIQRRFRKYREN-------PQLSRVDNSDWPDLVMIDGG 491

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQLS+   +L ++++   + ++S+AK  +     E F   + + L      P +  ++R
Sbjct: 492 KGQLSSVVTILAEMDLLADLQVVSLAKKRE-----EIFLPGESKPLETKAEQPGVQLLRR 546

Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFA+  HR++R  K   S LDEI G+G  R++LLL  F ++  I +++ + L  
Sbjct: 547 LRDEAHRFAVCFHRQQRSDKLTRSRLDEIPGLGQHRQKLLLAHFRSIDYIRQATSQQLEE 606

Query: 592 IEGISKKIACKIYNHFHKN 610
           ++GI  K+A  IY++FH +
Sbjct: 607 VQGIGMKLAKDIYDYFHPS 625


>gi|282901037|ref|ZP_06308970.1| Excinuclease ABC, C subunit [Cylindrospermopsis raciborskii CS-505]
 gi|281194128|gb|EFA69092.1| Excinuclease ABC, C subunit [Cylindrospermopsis raciborskii CS-505]
          Length = 631

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 196/626 (31%), Positives = 303/626 (48%), Gaps = 37/626 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY M D    ++Y+GK+  L+ R++SY     + T RI  M+ QI +I F +T
Sbjct: 22  EIPHAPGVYLMRDDRDTIIYIGKSRKLRSRVRSYFRDYTSKTQRINTMVQQITDIEFIIT 81

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST------- 116
            TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT   + P L+  R           
Sbjct: 82  DTEAEALALEANLIKQHQPYFNVLLKDDKKYPYLCITWSEEYPRLFITRKRQRGTQKLQG 141

Query: 117 ---IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  Y+GP+     +   ++  Q+ F +R     +F  + RPCL + I RC G C  
Sbjct: 142 DRPHKDKYYGPYTDSTLLRGVLHICQQIFPMRQRPQPLF--KDRPCLNYDIGRCPGVCQK 199

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            +S E Y + V +      G    L + +   M  A  +  +E+A   RD++  L  +  
Sbjct: 200 LVSVEDYHKVVEKVAMVFQGRTEELIDILTLQMETAVSELKFEAAAGIRDQIIGLKSLTA 259

Query: 234 HNDSIYNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289
                        D  +L  +   A IQ      G+  G   F     ++    +IL   
Sbjct: 260 RQKVSLPDDTVSRDAVALATDNQQAHIQLFQIRAGKLVGRLAFVAHGHAD--PGEILQRV 317

Query: 290 LRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
           L + Y        P  IL+  E     +L     ++ G KV I  P +  K ++IE    
Sbjct: 318 LEEHYQTADSVEIPTEILVQYELPHGDILADFLRQRKGKKVNIITPLRQTKAELIEMVEK 377

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA     +       +Q  L+D  +   L  +P RIE YD SHI G +AVG  VV  +  
Sbjct: 378 NAQYELKRMQKMGEVNQKCLEDLAEILGLLDLPHRIEGYDISHIQGSNAVGSQVVFIDGL 437

Query: 407 FVKNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
             K  YR + +  ++V     DD A +  V+ RRF Q I+N       P+        WP
Sbjct: 438 PAKQYYRHYKIKNSNVTIGHSDDFASLVEVIYRRFRQYIEN-------PQLPRQGNDDWP 490

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGGKGQLS    +L+++++   + +IS+AK  +     E F   + + L+     
Sbjct: 491 DLIMIDGGKGQLSTVVNILQEVDLFKDLQVISLAKKRE-----EIFLPDESQPLITQTEQ 545

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           P +  ++RLRDEAHRFAI  HR++R      S LDEI G+G  R++LLL  F T+  I +
Sbjct: 546 PGVQLLRRLRDEAHRFAIGFHRQQRSNQWQRSCLDEIPGLGVHRQKLLLAHFRTIDYIRQ 605

Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609
           ++ + LA   GI  K+A +I+ +FH 
Sbjct: 606 ATVQQLAEAPGIGLKLAQQIFAYFHP 631


>gi|118581649|ref|YP_902899.1| excinuclease ABC subunit C [Pelobacter propionicus DSM 2379]
 gi|118504359|gb|ABL00842.1| Excinuclease ABC subunit C [Pelobacter propionicus DSM 2379]
          Length = 617

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 191/626 (30%), Positives = 308/626 (49%), Gaps = 32/626 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
              Q+P  PGVY M D  G +LYVGKA +L++R++SY  ++  +  ++  ++++  +I  
Sbjct: 9   KIRQLPAAPGVYIMRDAGGEILYVGKARSLRQRVRSYFGASADSRYQVRFLMARCVDIDI 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T TE EALLLE  +IK+ +PR+N+ L+DDK++  + +      P     R        
Sbjct: 69  VLTDTEKEALLLENTLIKQHRPRYNLDLKDDKTYFSLRLDPAEPFPRFTLVRKIPRDSAR 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+AS  A    +  L R F LR    +    R RPCL  QI +CS PC G +++  Y
Sbjct: 129 YFGPYASASAARDVLRQLLRMFPLRHYPLTRCMARKRPCLYHQIGQCSAPCAGLVTAADY 188

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              V  A  FL G +  L  +  R M +A+ +  +E A   R+ L ++         +  
Sbjct: 189 ATLVEGAMLFLEGKSKQLVAEFKRRMLEASDQLRFEEAARWRNLLRSIQVTVEKQKMVTR 248

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY-TDK 297
               D    + +     +   F   G   G+  F L    E  +A+ ++ FLRQ+Y    
Sbjct: 249 GGDCDVLGFHRDGPRLQLALLFIRGGVLTGSRQFSLNW--ELDDAEGIASFLRQYYREGT 306

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I L  E E+ + L     +  G +V I  P +G KR+++E A  NA     ++  
Sbjct: 307 FIPDEIHLPLEIEDGAPLAELLSESRGKRVVIARPLRGVKRELVELAGKNAATQLRERDE 366

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + +   +L+   ++  L  +P+RIE YD S I G  +VG  VV  E    K  YR++ +
Sbjct: 367 KQAAADAVLEALRQRLKLTRLPRRIECYDISTIQGRFSVGSGVVFSEGRPDKPHYRRYRI 426

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V+ Q+D AM+  V  RRF       E L              PD+V++DGG GQL+
Sbjct: 427 R--HVEGQNDFAMLAEVFSRRFRPEKLEAEPL--------------PDLVVVDGGIGQLN 470

Query: 478 AAQGVLKKLNVENRITIISIAK-GPKRSAGMEK--------FFVKKGEALVLNMRDPILY 528
           A   ++ +L +E RI ++S+AK   +R A  E+        F   +   +VL      L 
Sbjct: 471 AVAQIIAELGLEGRIDLVSLAKSRVERDAEAEELRKSDERVFLPGRRNPVVLRQNSGPLL 530

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +  +RDEAHRFAI  HR  R K    S ++ + GIG  R+  LL+ FG+++++ ++S E
Sbjct: 531 LLAAIRDEAHRFAIGYHRTLRGKEGIASAIEGVAGIGSKRRAALLKRFGSLQLLKQASLE 590

Query: 588 TLASIEGISKKIACKIYNHFHKNTSH 613
            + ++EG+S+  A  +++  H     
Sbjct: 591 EIVAVEGMSRTTAEAVFDWLHGEKGE 616


>gi|319948952|ref|ZP_08023057.1| excinuclease ABC subunit C [Dietzia cinnamea P4]
 gi|319437390|gb|EFV92405.1| excinuclease ABC subunit C [Dietzia cinnamea P4]
          Length = 709

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 184/653 (28%), Positives = 298/653 (45%), Gaps = 56/653 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVG A NL+ R+ SY    +    R   M++    +++TV 
Sbjct: 13  SIPTEPGVYRFRDEHGRVIYVGTAKNLRSRLSSYFADLSLLHPRTRQMVTSAAGVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK+  PRFN+  RDDK++P + +T   ++P  + +R        YFG
Sbjct: 73  STEVEALQLEYTWIKKYDPRFNVRYRDDKTYPMLAVTVGEEVPRAFVYRGPRRPGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+  T+++LQR F +RSC+  V++ +    RPCLL  I +C+ PC G ++ +++
Sbjct: 133 PYSHAWAIRDTLDTLQRVFPVRSCSAGVYKRQAQLGRPCLLGYIDKCAAPCIGRVTPDEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V+E   FL+G    +  +I + M +A+   D+E A   RD L A+         +  
Sbjct: 193 RLIVNELIDFLAGRTDAIMRRIEKQMMEASADLDFERAARLRDDLGAMRRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL----------S 287
                D   +  ++    +Q      G+ RG   + ++                     S
Sbjct: 253 DGTDADVVGVEVDELQVSVQVFHVRGGRIRGQRGWVVEHAHGIDEDGEFDAARAIPGVVS 312

Query: 288 YFLRQFYTDK--------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPK 333
            +L QFY  +                P  +L+    E++  L        G +V + VP+
Sbjct: 313 DYLAQFYGGEADLAEAAESGDIASAVPREVLVPALPEDSDELADWLSGLRGSRVSLRVPQ 372

Query: 334 QGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSH 389
           +G+KR + E    NA  + TQ          +    L++  +   L   P RIE  D SH
Sbjct: 373 RGDKRALAETVHRNAVEALTQHKLRRSGDLTARSAALQEIQETLELDSAPLRIECVDISH 432

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIK---- 444
             G   +  +VV  +    K+ YR + +         DD A +  V  RRF +  +    
Sbjct: 433 TQGTDVMASLVVFEDGIPRKSDYRLYRIRDAAGDGHSDDVASIAEVTRRRFRRHHEDPAL 492

Query: 445 ---------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495
                    ++E  +         F   P + ++DGG+ Q+ AA  VL +L V + + +I
Sbjct: 493 TPDETDGPVDDEPGDPEAAPPARRFAYPPQLFVVDGGRPQVEAAAEVLSELGVTD-VPVI 551

Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR-KRRKKAAY 554
            IAK  +     E +   +   ++       L+ +QRLRDEAHRFAI  HR  R K+   
Sbjct: 552 GIAKRLE-----EIWLPGEEYPVIFPRHGEGLFLLQRLRDEAHRFAIRAHRGARSKRMTA 606

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           S LD++ G+GP R+  L++ F TV  +  +S E L ++ GI   +A  I    
Sbjct: 607 SVLDDVPGLGPARRAALVEKFPTVSALRAASVEDLCTVPGIGPGVAASILATL 659


>gi|332686483|ref|YP_004456257.1| excinuclease ABC subunit C [Melissococcus plutonius ATCC 35311]
 gi|332370492|dbj|BAK21448.1| excinuclease ABC subunit C [Melissococcus plutonius ATCC 35311]
          Length = 595

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 190/616 (30%), Positives = 309/616 (50%), Gaps = 41/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   ++ T +   ++S+I++  + VT +
Sbjct: 12  LPDQPGCYLMKDKTGEVIYVGKAKILKNRVRSYFRGSHDT-KTERLVSEIDDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EALLLE N+I +  P++NI+L+DDKS+P+I IT   K P L   R  +  QG YFGP+
Sbjct: 71  NIEALLLEINLIHKNDPKYNIMLKDDKSYPFIKIT-HEKYPRLLITRKVAKDQGLYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +T   L R + LR C+     H+ +PCL + + +C  P    +  + Y + V 
Sbjct: 130 PDVGAANETKKLLDRLYPLRKCS----LHQKQPCLYYHLGQCLCPSVFHVDPKVYTDMVG 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E K+FL+GG   +++++  NM  A    ++E A  +RD++ A+  +              
Sbjct: 186 EIKQFLNGGYTKIQQQLETNMKTAAEAMEFERAAEYRDQIKAIETVMTRQKITNTDLIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            ++  +  +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRQGKLIERDVSLFPFYNDKEDDFLTFVGQFYQKDEHFIPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           IL+ +  ++ S+  +   K       I  P++GEK+K+++ A  NA           +  
Sbjct: 306 ILIPDAIDKKSMEVMLSTK-------IIQPQRGEKKKLVKLATKNAVVALKEKFNLVMHK 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      ++   +   +     RIE +DNS+IMG   V  MVV  +    K++YRK+ + 
Sbjct: 359 QERTTGAIEKLAEAMHISLPR-RIESFDNSNIMGSDPVSAMVVFVDGKPKKDEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD A MR V+ RR+S+++K                  +PD++I+DGGKGQ+ A
Sbjct: 418 T--VKGADDYASMREVIYRRYSRVLKEN--------------LPFPDLIIMDGGKGQIDA 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I I  + K  K     E  F  K E + L       + +QR++DE H
Sbjct: 462 AKSVLDN-QLGIDIPIAGLVKNDKHKTS-ELLFGSKLEPIPLARNSQEFFLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++ S LD I G+GP RK LLL  F ++K +  ++ E L    G+ K
Sbjct: 520 RFAITFHRQLRSKNSFASKLDRIEGLGPKRKNLLLCQFKSLKNMMAATEEELQRA-GLPK 578

Query: 598 KIACKIYNHFHKNTSH 613
            +A  +Y +FH+   +
Sbjct: 579 NVAKNVYTYFHEQEKN 594


>gi|168334892|ref|ZP_02693013.1| excinuclease ABC, C subunit [Epulopiscium sp. 'N.t. morphotype B']
          Length = 602

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 196/615 (31%), Positives = 300/615 (48%), Gaps = 37/615 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +P  PGVY M D    V+YVGKA NL+ R+  Y   N NH+ +   M+S I +  + VT
Sbjct: 3   NLPTTPGVYLMKDDLDEVIYVGKAKNLKNRVSQYFQKNKNHSAKTIKMVSNIASYEYIVT 62

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL+LE N+IK+  P++NI L+DDK +PYI I  K   P +   R        YFG
Sbjct: 63  NTEVEALILECNLIKKYSPKYNIRLKDDKRYPYIKINIKSPFPRIQVVRKIIKDDAKYFG 122

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYM 181
           P+    ++ + I  +++ + LRS    + +   + R CL F I RCSGPC   I++ +Y 
Sbjct: 123 PYTDATSMWEMIELIKQLWQLRSXNKKLPKDIGKNRECLNFHIGRCSGPCIKNITAREYH 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V E  +FLSG       ++ + M++A+   ++E A   RD+L A++ ++         
Sbjct: 183 KIVDEIVEFLSGDYRKXVTELKQRMSEASDAMNFELAATLRDQLIAIAKLEQKQTVDTAS 242

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            +  D  +     N A IQ  F   G+  G   F L+  +      +   F+  FY +  
Sbjct: 243 KDNQDIVAYAEGTNDALIQVYFVRSGKLVGREHFILRDATGDEAKTLFRNFILXFYAEAT 302

Query: 299 -CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHT 353
             P  I++     E  LLE     + G +V IT PK+G K  ++E A  NA         
Sbjct: 303 FVPREIVVQVIPAEVELLENYLSDKRGARVVITSPKKGTKFNLLELAKKNAELTFFEQGD 362

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           Q      + ++ L    +   L     RIE +D S+  G   VG MVV       K+ YR
Sbjct: 363 QLKKKLENTKLALSQLQEALNLEKPIIRIEAFDISNTSGVYPVGAMVVFENGVPKKSDYR 422

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           KF +    V+ Q+D A M  +L RR+    + +                 PD++ +DGGK
Sbjct: 423 KFKIKT--VRGQNDYAAMEEMLSRRYKNAEEGK----------------VPDMIFMDGGK 464

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q++AA+ VL K N+E  I +  + K  K         + +   +VL     +   + R+
Sbjct: 465 SQVAAAKKVLVKYNLE--ILVCGMVKDEKHRTFG---LLYEDNEIVLPKFSKLFKLVTRI 519

Query: 534 RDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +DE HRFAI  HRK R    +S LDEI G+GP+RK++LL +F +V  +  +S E L    
Sbjct: 520 QDEVHRFAIEYHRKLRGN-IHSVLDEIKGVGPVRKKILLLNFKSVYNLKEASLEELEQY- 577

Query: 594 GISKKIACKIYNHFH 608
            I K +A  +Y +F+
Sbjct: 578 -IPKDVAKNVYTYFN 591


>gi|304438825|ref|ZP_07398751.1| excision endonuclease subunit UvrC [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372708|gb|EFM26288.1| excision endonuclease subunit UvrC [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 608

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 195/616 (31%), Positives = 326/616 (52%), Gaps = 30/616 (4%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVTC 64
           +PE PGVY M D    V+YVGKA NL+ R++ Y  S   +  ++  M+  I++  + +  
Sbjct: 10  LPENPGVYLMKDKTDAVIYVGKAKNLRNRVRQYFGSYGKSTRKVESMVKNISDFEYIIVG 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            EVE+L+LE+N+IK L P++NILLRDDK +PYI +T K + P + K R        YFGP
Sbjct: 70  NEVESLILESNLIKELSPKYNILLRDDKQYPYIKVTVKDRFPKVEKTRRIIKDGAKYFGP 129

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYME 182
           + +V AV   I   ++ + +R C  ++ +     +PCL F IK+C GPC G+++ E+Y  
Sbjct: 130 YPNVMAVNDAITVFEKRYMIRDCKLNLNKKPLSFKPCLNFFIKKCMGPCKGDVTEEEYAP 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIY 239
            + E   FL+G +  +   + + M  A+ + ++E A   RD + +L  +Q       +  
Sbjct: 190 MIDEILNFLAGDDTLI-NSLEKEMMDASKELNFEKAAELRDMMNSLIALQEKQLMDSANT 248

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP- 298
           +  D  +     +   +Q  F   G+  G   F ++    +++ +I+S F++QFY     
Sbjct: 249 DNRDIIAFARGMDSVVVQIFFIRLGKIVGREHFLIEDPYGASDEEIISDFMKQFYMGAAF 308

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ IL     E++ +LE    ++ G KVKI+VP++GEK  ++     NA    ++   +
Sbjct: 309 VPKEILTESMPEDSEILEEFLSEKAGKKVKISVPQKGEKSHLMSLVRKNALDMVSKYQDS 368

Query: 359 EISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
             S        L+   +   L  IPKRIE YD S+I G  +VG MVV       K+ YRK
Sbjct: 369 YESKMKSNLIALEKLQEALNLKKIPKRIECYDISNISGVESVGSMVVFENGDAKKSDYRK 428

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A ++ VLERRF +  ++++           SF   PD++++DGGKG
Sbjct: 429 FRIKT--VVGPDDYASLKEVLERRFKRAKEDQK----------GSFTLLPDLILMDGGKG 476

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+  A+ V++ + +E  I +  + K    +       + +   + L +R  +   + +++
Sbjct: 477 QVGIAKQVMEDMGIE--IEVAGLVKDDFHTTRA---IIYENREIPLEIRGGLYRLLYKIQ 531

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +EAHRFAI  HR    K A  S LD+I GIG +RK+ L++ F T+  I  ++ E L  + 
Sbjct: 532 EEAHRFAIGYHRSLHSKTAFKSELDDIEGIGKIRKQNLMKHFKTIDKIKEATIEELMEVP 591

Query: 594 GISKKIACKIYNHFHK 609
            +++  A ++YNH+ K
Sbjct: 592 SMNRTSAEELYNHWRK 607


>gi|113476857|ref|YP_722918.1| excinuclease ABC subunit C [Trichodesmium erythraeum IMS101]
 gi|119367860|sp|Q10Z79|UVRC_TRIEI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|110167905|gb|ABG52445.1| Excinuclease ABC subunit C [Trichodesmium erythraeum IMS101]
          Length = 622

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/624 (32%), Positives = 310/624 (49%), Gaps = 38/624 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61
            +++P+ PGVY M D + R+LY+GK+  L+ R++SY     NHTHRI+ MI QI  I F 
Sbjct: 19  LKEIPQTPGVYLMRDRSDRILYIGKSKKLRNRVRSYFRDGKNHTHRISLMIQQIVEIEFI 78

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQG 119
           VT TE EAL LEAN++K+ +P FN+LL+DDK +PY+ IT     P ++  R       + 
Sbjct: 79  VTDTEAEALALEANLVKQHQPYFNVLLKDDKKYPYLCITWSEDYPRIFITRKRRLGKAKD 138

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+     +  T++ ++R F LR     +F+ R+  CL + I RC G C   I+ E+
Sbjct: 139 RYYGPYVDTRLLRNTLHLVKRIFPLRQRPKPLFKDRS--CLNYDIGRCPGVCQELITPEE 196

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + V        G    L + +   M +     ++E A   RD++  L+ +        
Sbjct: 197 YHKIVQRVAMIFQGRTGELIDILNTQMEKEAEALNFEKAAFIRDQIRGLNSLNADQKVSL 256

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD-----SESTNAQILSYFL 290
                  D  +L  N  +AC+Q      G+  G   F  +              IL   L
Sbjct: 257 PDDRVSRDAIALAGNHQIACVQLFQIRAGKLVGRLGFIAEIPDLGTAENQELGVILQRVL 316

Query: 291 RQFYT---DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y        P  I++  E  E++ L+    ++ G KV+I VP++  K ++IE    N
Sbjct: 317 ESHYQIVESVEIPTEIIVQNELPESNFLQNWLTEKKGKKVEIFVPQRQGKAELIEMVKKN 376

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A     +       +   + D  +   LP +P RIE YD SHI G  AV   VV  +   
Sbjct: 377 AEYELLRLAKMSDRNNEAMTDLAEILDLPELPHRIEGYDISHIQGSDAVASRVVFIDGLP 436

Query: 408 VKNQYRKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
            K  YR + +   +V++    D A M  V+ RRF    K              +    PD
Sbjct: 437 AKQHYRHYKIKNPEVRSGHSDDFASMAEVIGRRFRDYEKQ-------------TTTDKPD 483

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++++DGGKGQLSA   V++++N+   + ++S+AK  +     E F   + E L  +   P
Sbjct: 484 LIMIDGGKGQLSAVVAVMEEMNILEEVRVVSLAKQRE-----EIFLPGESEPLRTDAEQP 538

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            +  ++RLRDEAHRFA++ HR RR  +   S LDEI G+G  R++LLL  F +V  I  +
Sbjct: 539 GVQLLRRLRDEAHRFAVSFHRDRRSQRMKRSRLDEIPGLGQHRQKLLLGHFHSVDYIRMA 598

Query: 585 SPETLASIEGISKKIACKIYNHFH 608
           + E LA + G+  K+A +IY++FH
Sbjct: 599 TVEQLAEVSGVGPKLAQQIYDYFH 622


>gi|310820626|ref|YP_003952984.1| UvrABC system protein C [Stigmatella aurantiaca DW4/3-1]
 gi|309393698|gb|ADO71157.1| UvrABC system protein C [Stigmatella aurantiaca DW4/3-1]
          Length = 646

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 193/632 (30%), Positives = 309/632 (48%), Gaps = 38/632 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQ-INNIRF 60
             + +P  PGVY M D  G ++YVGKA NL+ R++SY      T     ++   + +I  
Sbjct: 8   KLDSLPTEPGVYLMKDRRGLIIYVGKAVNLRNRVRSYFTRTGDTRAFIALLDTMLGDIET 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +   E EALLLE  +IK+ KPRFN+LL+DDK F  + +      P L   R        
Sbjct: 68  VLVHNEKEALLLENELIKKHKPRFNVLLKDDKQFISLRLDRSQPYPRLEVVRKYERDGAR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP++S  A+ +T+  + R F LR+C D V  +R RPCLL QI RC  PC   +  E Y
Sbjct: 128 YFGPYSSAGAIRETLRIINRYFHLRTCTDHVLANRKRPCLLHQIGRCPAPCVYPVPPEDY 187

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
              V E   FL G    L + +   M +A  +  +E A   RD+L A+            
Sbjct: 188 RRSVDEVGMFLEGKAGELVDGLRARMKRAASELKFEEAARLRDQLQAIERSLERQKVATT 247

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
            +   D F+ Y   +       +   G+  G   F   +        + S+    +    
Sbjct: 248 DFKDQDVFASYREGDRILFYVLWVRQGRLNGGQAFPFGSQEFPDEELLASFVNLYYDQGS 307

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             PE +LL  E E    LE    ++ G KV++ VPK+GEK +++  A  NA ++  ++  
Sbjct: 308 FVPEEVLLPLEPESLEGLEGLLSERKGQKVRVLVPKRGEKHELVLMAHKNAEQAFVERKR 367

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
           T+     +L    +K  L + P+R+E +D SH  G S V   V V +    K++YR++ +
Sbjct: 368 TKDETDAVLGRLQQKLGLRNYPRRMECFDISHFQGSSIVASQVAVTDGETDKSRYRRYKI 427

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               ++ QDD A M  V+ RR  +  + ++                PD++++DGGKGQL+
Sbjct: 428 KT--LEKQDDFASMYEVISRRLKRGQEEKD---------------LPDLLVIDGGKGQLA 470

Query: 478 AAQGVLKKLNVENRITIISIAK---------GPKRSAGMEK-FFVKKGEALVLNMRDPIL 527
           +A   +K L VE  + ++ +AK           + +   E+ F + + + +VL      +
Sbjct: 471 SAHAAMKDLGVEG-VDVVGLAKSRDQEVFDRDAESARSPERVFVLGRKDPIVLPQNSAEI 529

Query: 528 YFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           + + R+RDEAHRFAIT  RK  RK   +S L++I G+G  R++LLL+ FG++K +  +S 
Sbjct: 530 FMLTRMRDEAHRFAITFQRKDLRKSRIHSALEDIPGVGEGRRKLLLRHFGSLKRVGEASI 589

Query: 587 ETLASIEGISKKIACKIYNHFH---KNTSHTP 615
           E LA + G    +A +++   H   +  +  P
Sbjct: 590 EDLAEVVG--PSMAERVHAGLHGHPEEDASDP 619


>gi|325285985|ref|YP_004261775.1| UvrABC system protein C [Cellulophaga lytica DSM 7489]
 gi|324321439|gb|ADY28904.1| UvrABC system protein C [Cellulophaga lytica DSM 7489]
          Length = 596

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 189/623 (30%), Positives = 300/623 (48%), Gaps = 50/623 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +P  PGVYQ  D   ++LYVGKA NL+KR+ SY +  +   +   ++ +I  I+ 
Sbjct: 9   LQLSTLPNSPGVYQFYDKEEKILYVGKAKNLKKRVSSYFNKTHDNGKTKVLVKKIVYIKH 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ KPR+N+LL+DDK++P+I I    + P ++  R+       
Sbjct: 69  IVVDTESDALLLENNLIKKYKPRYNVLLKDDKTYPWICI-KNERFPRVFYTRNLIKDGSE 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ ++  V   ++ ++  + LR+C      + +  H+ + CL + +  C GPC G  
Sbjct: 128 YFGPYTNMKTVRVLLDLIKSVYPLRTCNYDLSAEKINAHKYKVCLEYHLGNCKGPCEGYQ 187

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           ++E+Y   + E K  L G   +        M     +  +E A   ++++  L + Q   
Sbjct: 188 TTEEYQRQIVEIKDILKGNFKSSLHYFKTQMKFLASEMRFEEAQDFKEKIEVLENYQAKT 247

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  N +D FS+  +++ A I       G    + T  LK     T+ ++L   + +
Sbjct: 248 TIVNPKINNVDVFSIISDESYAYINFLQLSHGAIIRSHTLELKKKLNETDEELLQLGIIE 307

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                      L                      +K+T+PK G+K++I+E +  NA    
Sbjct: 308 IRQRFKSHSRELYLPFPVTVD-----------RNLKVTIPKLGDKKRILELSERNAKYFR 356

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            ++         +     I+    K   L   P+ IE +DNS+I G + V   VV     
Sbjct: 357 MERFKQLKVTDPDRHTNRIMAQMKKDLRLSEEPRHIECFDNSNIQGTNPVAACVVFKNGK 416

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K +YR +N+    V   DD A M  V+ RR+ +L++ E+ L              P +
Sbjct: 417 PAKKEYRHYNIKT--VVGPDDFASMEEVVFRRYKRLLEEEQPL--------------PQL 460

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGGKGQLS+A   L  L +  +I II IAK  +     E +F      L L+ +   
Sbjct: 461 IVIDGGKGQLSSALKSLDALELRGKIAIIGIAKRLE-----EIYFPGDSIPLYLDKKSES 515

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  +Q+LR+EAHRF IT HRK+R   A  S L+ I G+G      LL+SF +VK I  +S
Sbjct: 516 LKIVQQLRNEAHRFGITFHRKKRSNAAINSELEGIEGVGEKTATDLLKSFKSVKRIKEAS 575

Query: 586 PETLASIEGISKKIACKIYNHFH 608
            E LA + G+SK  A KIYN FH
Sbjct: 576 IEKLAEVVGMSK--AQKIYNTFH 596


>gi|312884542|ref|ZP_07744246.1| excinuclease ABC subunit C [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367854|gb|EFP95402.1| excinuclease ABC subunit C [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 588

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 197/607 (32%), Positives = 319/607 (52%), Gaps = 31/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY  S   + +   ++S I+ I  TVT TE EAL+LE 
Sbjct: 1   MYNADSDVIYVGKAKDLKKRLSSYFRSKVDSEKTRALVSNIDKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI I+  HK P +  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFIS-AHKHPRVSIHRGTKKRKGEYFGPYPDSKAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+++R+RPCL++QI RC+ PC    IS E+Y E V   + FL G
Sbjct: 120 LHIIQKIFTVRQCEDTVYKNRSRPCLMYQIGRCAAPCISSIISDEQYAELVDFLRLFLKG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            +  + E +   M  A+ +  +E A  +RD++ A+  IQ       N    MD       
Sbjct: 180 KDQQVLESLVAKMELASKELRFEDAAKNRDQIQAIRRIQEQQFVSENSEEDMDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLS 306
             +ACI       G+  G+ + F K  S +   ++   FL Q+Y ++      P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSNTDREEVFYSFLTQYYLNQSESRTIPTRIILN 299

Query: 307 -EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
               E  S LE +       KV   +   G + + ++ +  NA  + T K++ +++    
Sbjct: 300 EHLIENASALESTLSDLAHRKVSFHIAPSGNRGRYLKLSNTNALTAITSKINHKMTIFQR 359

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            K+ ++   + +I  R+E +D SH MG S +   VV  + G +K +YR++N+    +   
Sbjct: 360 FKELSELLEIENIS-RMECFDISHTMGESTIASCVVFNQEGPLKQEYRRYNI--TGITGG 416

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A M   LERR+++ I  +                 PD++ +DGGKGQL++A  ++  
Sbjct: 417 DDYAAMAQALERRYAKQIDVD---------------RIPDIIFIDGGKGQLNSAMKMIAN 461

Query: 486 L--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              +   R  ++ IAKG  R  G+E      G    L+   P L+ +Q +RDE+H  AI 
Sbjct: 462 HWTDWPKRPRLVGIAKGTTRKPGLETLITDDGREFGLSTDAPALHLMQHIRDESHNHAIA 521

Query: 544 THRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR +R K    S L+ I GIGP R++ LL+  G ++ + ++S E +  + GIS  +A  
Sbjct: 522 GHRAKRGKTRKTSILEGIEGIGPKRRQALLKYMGGLQELKKASVEEITKVPGISASLAEI 581

Query: 603 IYNHFHK 609
           I+    +
Sbjct: 582 IHQALKQ 588


>gi|149183293|ref|ZP_01861734.1| excinuclease ABC subunit C [Bacillus sp. SG-1]
 gi|148848986|gb|EDL63195.1| excinuclease ABC subunit C [Bacillus sp. SG-1]
          Length = 590

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 184/612 (30%), Positives = 301/612 (49%), Gaps = 41/612 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTQRLVGEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDKS+P+I +T   + P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNVMLKDDKSYPFIKLT-AERHPRLIITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +T   L R + LR C +       R CL + + +C  PC  E+  E Y +   
Sbjct: 130 PNAGAANETKKLLDRIYPLRKCDNLP----DRVCLYYHLGQCLAPCVKEVEPETYKKLTD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
           E  +FL+GG  ++K+++   M +A    ++E A   RD+++ +             +   
Sbjct: 186 EISRFLNGGYKDIKKELNEKMAEAAENLEFERAKEFRDQISHIEATMEKQTMDIADFTDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         T+   P+ 
Sbjct: 246 DIFGYAVDKGWMCVQVFFIRQGKLIERDVSLFPIYDEPAEEFLTFIGQFYSKTNHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           I L E  +E+ + E+   +        T PK+G+K+ +++ A  NA              
Sbjct: 306 INLPEGIDESIVSELLDVRT-------TQPKKGQKKHLVQLAGKNAEIALKEKFALIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E    M +    +   + + P RIE +DNS+I G   V  M+V  +    K +YRK+ + 
Sbjct: 359 EERTVMAVDKLGEAMGI-YTPHRIEAFDNSNIQGTDPVSAMIVFLDGKPEKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+++++K                   PD++I+DGGKGQ+ A
Sbjct: 418 S--VKGPDDYDSMREVVRRRYTRVLKEG--------------LPLPDLIIIDGGKGQIGA 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +L +   I +  +AK  K     E  +    E + L  R    Y +QR++DE H
Sbjct: 462 AKEVL-ELELNLDIPVAGLAKDDKHQTS-ELLYGNPLEIIPLEKRSQEFYLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K A+S  LDE++GIGP RK+ L ++FG++K +  +S E L    G+ K
Sbjct: 520 RFAITFHRQLRGKTAFSSMLDEVSGIGPKRKKQLQKTFGSMKKMKEASLEELTEA-GLPK 578

Query: 598 KIACKIYNHFHK 609
             A ++     +
Sbjct: 579 AAAEELMQKLKE 590


>gi|325978101|ref|YP_004287817.1| Excinuclease ABC subunit C [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178029|emb|CBZ48073.1| Excinuclease ABC subunit C [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 633

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 172/619 (27%), Positives = 295/619 (47%), Gaps = 40/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY H +++T +   ++S+I +  + 
Sbjct: 42  KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 100

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT   + P L   R        Y
Sbjct: 101 VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITTNEQYPRLMITRQIKKDGAMY 160

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C       +  + ++
Sbjct: 161 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 216

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           +  H+ K FL+G ++ + +++   M +A+   ++E A  +RD L A+S ++     +   
Sbjct: 217 DMAHDVKNFLNGQDNKIVDQLKDKMQKASDLMEFERAAEYRDLLQAISTLRTKQRVMSQD 276

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 277 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYMGQFYRDNKHF 336

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I + +E +E  +  I   K          P++GEK++++  A+ NA     +    
Sbjct: 337 IPKEIFIPKEIDEELVKAIVDTKIIK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 389

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+I G S V  MVV       K  YRK
Sbjct: 390 LEKDVKKTYGAVENIGELLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 448

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K+                  PD++I+DGG+G
Sbjct: 449 FKIKT--VVGPDDYASMREVIYRRYSRVMKDG--------------LVPPDLIIIDGGQG 492

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F    E + L       + +QR++
Sbjct: 493 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 550

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  + + +  
Sbjct: 551 DEVHRFAITFHRQVRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNIQKADIDDIVN-C 609

Query: 594 GISKKIACKIYNHFHKNTS 612
           GI + +A  I    ++  +
Sbjct: 610 GIPRNVATAIKEKLNEEEA 628


>gi|319892136|ref|YP_004149011.1| Excinuclease ABC subunit C [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161832|gb|ADV05375.1| Excinuclease ABC subunit C [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464753|gb|ADX76906.1| excinuclease ABC subunit C [Staphylococcus pseudintermedius ED99]
          Length = 595

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 175/614 (28%), Positives = 287/614 (46%), Gaps = 43/614 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY    + T + T ++ +I +  + VT +
Sbjct: 15  LPMEPGCYLMKDRQNQVIYVGKAKKLRNRVRSYFTGAHDT-KTTRLVREIVDFEYIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K + P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKKYQPRYNILLKDDKSYPFIKIT-KERHPKLIVTRTVRKGSGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R +  R       +   R CL + I +C GPC   +  E+Y     
Sbjct: 133 PNAYSAHETKKLLDRIYPFRK----CDKMPDRLCLYYHIGQCLGPCVYPVQQEEYGRMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH---NDSIYNRM 242
           E   FL+G +  + + +   M +A+   ++E A  +RD +  ++++              
Sbjct: 189 EITDFLNGEDKTILKNLEEKMIKASENLEFEQAKEYRDLIQHVNNLTKKQKIMSVDQTVR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  + +K   CIQ  F   G                                   P+ 
Sbjct: 249 DVFGYHVDKGWMCIQVFFIRQGNLIEREATMFPLQQTPEEEFYTFIGQFYQLNQHFLPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + + ++ +   +              I  P++G+K+++++ A  NA  S   K       
Sbjct: 309 VHIPKQLDVEMV-------HTVVDTNIVTPQRGQKKQLVDMANKNARISLENKFELIARD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++       +  IP RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTVKAIEQLADAMGI-QIPIRIEAFDNSNIQGVDPVSAMVSFVDGKPDKKGYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   M+  + RR+++++                    PD++I+DGGKG +S+
Sbjct: 421 S--VEGPDDYKSMQEAVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMSS 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I I  +AK  K     E  + +  + + L       Y +QR++DE 
Sbjct: 465 VADVLENELGLD--IPIAGLAKNDKHQTS-ELLYGETAQVVPLKKNSQAFYLLQRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD++ GIGP RK  LL++FG++K +  +S ETL    G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLRSILDQVEGIGPKRKTKLLRTFGSIKKMREASVETLQEA-GLP 580

Query: 597 KKIACKIYNHFHKN 610
           KK A  ++    + 
Sbjct: 581 KKTAEVLFKALQEE 594


>gi|322421886|ref|YP_004201109.1| excinuclease ABC subunit C [Geobacter sp. M18]
 gi|320128273|gb|ADW15833.1| excinuclease ABC, C subunit [Geobacter sp. M18]
          Length = 614

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 198/623 (31%), Positives = 304/623 (48%), Gaps = 31/623 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTV 62
           +  P  PGVY M    G ++YVGKA +L+KR++SY+     +   I  M+  + ++ + V
Sbjct: 8   DNFPSSPGVYLMKTADGSIIYVGKARSLKKRVRSYVGDTRDSRVHIRFMVQLVESVDYLV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE  +IK+ +P++NI LRDDK++  + +  K + P L   R   +    YF
Sbjct: 68  TDTEKEALILENTLIKQHRPKYNINLRDDKTYFSLRMDMKEEFPRLSLVRKIPSDGARYF 127

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP++S  A ++ +  L + F LR    +    R RPCL +QIK+CS PC G+IS E+Y  
Sbjct: 128 GPYSSATAAKEVLKQLYKMFPLRHYPLATCVARKRPCLYYQIKQCSAPCCGKISREEYAI 187

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
               A  FL G N  +       MNQA+ +  YE A  +RD L A+         +    
Sbjct: 188 LAEGAALFLEGKNTEIARLYRARMNQASREMRYEDAARYRDLLRAIEVTVERQKMVAQGG 247

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCPE 301
           D      ++    +Q    H      T       D E    + L+ FL ++Y  D P P 
Sbjct: 248 DSDVFGLHREGDQMQIALLHIRGGTVTGGRGFLFDWEMETEEGLASFLNEYYDLDAPIPP 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +LL     E   LE    ++ G KV I+ P++G K ++++ A  NA  +  ++L+ E S
Sbjct: 308 RVLLPMTIPEPGPLEELLSEKAGKKVTISAPQRGPKLEMVKLAQKNAETASKERLAKEGS 367

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L +  +K  L   P+RIE YD S+I G  AVG  VV  +    ++ YR++ +    
Sbjct: 368 SATLLTELAEKLHLTRTPRRIECYDISNIQGEMAVGSRVVFIDGKADRSLYRRYRIKG-- 425

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           V   DD AMMR VL RRF      E+                PD++++DGG GQL     
Sbjct: 426 VLQSDDFAMMREVLSRRFKAETTEEQ----------------PDLIVVDGGLGQLGVLNA 469

Query: 482 VLKKLNVENRITIISIAK-GPKRSAGMEK--------FFVKKGEALVLNMRDPILYFIQR 532
           VL +L V   +    +AK    R    E+        F   +   + L      L  + R
Sbjct: 470 VLDELGVSG-VEAAGLAKSRVARDMESEEISRSDERVFRPGRKNPVTLRQSSAPLLLLAR 528

Query: 533 LRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDEAHRFA+T H+  R K    S LD++ GIG  RK+ LL+ FG++K +  ++ E L +
Sbjct: 529 IRDEAHRFAVTYHKAVRSKILTGSALDQVPGIGAKRKKALLKHFGSLKGVQGATLEELMA 588

Query: 592 IEGISKKIACKIYNHFHKNTSHT 614
             G++++ A  ++ H        
Sbjct: 589 APGMTERAARALWEHLQGEGGTA 611


>gi|323489943|ref|ZP_08095164.1| excinuclease ABC subunit C [Planococcus donghaensis MPA1U2]
 gi|323396239|gb|EGA89064.1| excinuclease ABC subunit C [Planococcus donghaensis MPA1U2]
          Length = 598

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 181/614 (29%), Positives = 291/614 (47%), Gaps = 41/614 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   ++ T +   ++++I +  + +T +
Sbjct: 13  LPDQPGCYLMKDRQDTVIYVGKAKVLKNRVRSYFTGSHDT-KTQRLVNEIVDFEYIITSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EAL+LE N+IK+  P++NI+L+DDKS+PY+ IT   + P L   R     +G YFGP+
Sbjct: 72  DKEALILELNLIKKYDPKYNIMLKDDKSYPYLKIT-GERHPKLITTRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +T   L R + LR C         R CL + + +C  PC   I  E Y E + 
Sbjct: 131 PNAYAAAETKKLLDRLYPLRKCHTMP----DRVCLYYHLGQCLAPCVKPIEKETYQELID 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
              KFL+GG   +KE++   M++A    ++E A  +RD++  +  +        N     
Sbjct: 187 GITKFLNGGFREVKEQLVEKMSEAAENLEFERAKEYRDQINMIETVMEKQKMAMNDFTNR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+   +K   C+Q  F   G+             +     +          +   P  
Sbjct: 247 DVFAYAVDKGWMCVQVFFVRQGKLIERDVSLFPLYRDPEEEFLTFLGQFYEKANHVKPSE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           IL+ E  +   L E          V++ VP++G+K++++  A  NA              
Sbjct: 307 ILIPEADDPDMLKE-------WLGVRVLVPQRGKKKELVALAKKNAEVAIKEKFQLLERQ 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E        D  +   +     RIE +DNSHI G  AV  M+   +    K  YRK+   
Sbjct: 360 EERTIGACVDLGEAMNIETPL-RIEAFDNSHIQGADAVSAMITFIDGKPSKKDYRKYKTR 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD A MR V+ RR+S+++K+                  PD++++DGGKGQ+ +
Sbjct: 419 NA--SKPDDYAAMREVIRRRYSRVLKDG--------------LPLPDLIVIDGGKGQMES 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ +L+   +   I I  +AK  K        +    E + L       Y +QR++DE H
Sbjct: 463 AREILED-ELGLSIPIAGLAKDTKHQTSQ-LLYGSPAEIVPLKRTSEAFYLLQRIQDEVH 520

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RF IT HR+ R K +  S LD + G+GP RK+ LL+ FG+VK I  +S E +    G+ +
Sbjct: 521 RFVITFHRQLRGKNSIQSALDGLQGVGPKRKQQLLKHFGSVKKIKEASVEEIKEA-GMPE 579

Query: 598 KIACKIYNHFHKNT 611
            +A  I  HF ++T
Sbjct: 580 ALAQSIEKHFAEDT 593


>gi|94970144|ref|YP_592192.1| excinuclease ABC subunit C [Candidatus Koribacter versatilis
           Ellin345]
 gi|119367490|sp|Q1ILY2|UVRC_ACIBL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|94552194|gb|ABF42118.1| Excinuclease ABC subunit C [Candidatus Koribacter versatilis
           Ellin345]
          Length = 610

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 195/625 (31%), Positives = 309/625 (49%), Gaps = 37/625 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
               +P  PGVY   +  G ++YVGKA NL+ R+ SY     +   +   ++ +  ++ +
Sbjct: 6   KIRTLPTSPGVYLYKNAEGEIIYVGKAKNLRSRVGSYFVRGADENSKTGSLLREAVDVEY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V   E EAL LE N+IK+ KPRFNILLRDDK++PYI +T   K P +Y  R        
Sbjct: 66  IVVDNEKEALALENNLIKQKKPRFNILLRDDKTYPYIKLTMGEKWPRVYVTRRLKKDGSE 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE-K 179
           Y+GPF   +   + ++ + R F + SC   + R+  RPCL   I RC GPC   +++E +
Sbjct: 126 YYGPFFPANLAYRVVDLIHRNFLVPSCYIDLRRYHPRPCLQHYIGRCLGPCVEGLTNEVQ 185

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E V + K FL G + +LK+ +   MN+A     +E A  +RD +  +  +        
Sbjct: 186 YGEAVKDVKLFLEGRHSDLKQSLTARMNKAAEGMQFELAAKYRDLITTVEDLHQKQRIAA 245

Query: 240 ---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA------QILSYFL 290
              +  D F  ++  ++  +       G+      FF +   E          +  S  L
Sbjct: 246 AEGDDADVFGYHYENHMVAVNLFHMRGGKVLDRRDFFFEDLGEMEATGGLNTGEFFSTLL 305

Query: 291 RQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
           +Q Y D    P  I +  E E+   L     +Q   K+ I VP++G+KR +I+    NA 
Sbjct: 306 QQIYLDNKYVPRTIYVPVEFEDREALCEILSEQMHRKIDINVPQRGDKRSLIDLVAQNAK 365

Query: 350 RSHTQKLSTEISHQMILKD-FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +S+ Q+         +LK        LP +P RIE +D SHI G   V  MVV  +    
Sbjct: 366 QSYDQRFRVMRPQTDVLKSVLQDTLELPELPNRIECFDISHIQGAETVASMVVWEDGKMK 425

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K+ YRKF +    V+  DD A MR V+ RR+ ++++  +                P +V+
Sbjct: 426 KSDYRKFIIKT--VQGVDDFASMREVVTRRYKRIVEENQ--------------PMPSLVL 469

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGG GQL AA G L+ + + N+  + SIAK  +          ++ E + ++   P+L+
Sbjct: 470 IDGGVGQLHAAAGALEAIGITNQ-PLASIAKREEIIY----VHGREDEPIRIDHHSPVLH 524

Query: 529 FIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            IQ +RDEAHRFAIT HRKRR+ +   + L EI GIG    + LL+ FG+++ I  ++  
Sbjct: 525 IIQLIRDEAHRFAITFHRKRREIRDRSNELLEIPGIGEQAMKRLLRHFGSIQSIRTANAT 584

Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612
           +L ++  +++  A  I  HF    +
Sbjct: 585 SLEAV--VNRTQAEAILAHFRAEET 607


>gi|229087074|ref|ZP_04219225.1| UvrABC system protein C [Bacillus cereus Rock3-44]
 gi|228696218|gb|EEL49052.1| UvrABC system protein C [Bacillus cereus Rock3-44]
          Length = 594

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 176/611 (28%), Positives = 296/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  EI+ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEITDEQNQEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 GIVKFLNGGHKEIRSELEAKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYEQNNHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V +T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDPELV-------ERFLEVNVTQPKRGKKKDLVELASKNAKIALGEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLDIETP-YRIEAFDNSNIQGTNPVSAMIVFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++++DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIVIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHRTSH-LMIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD I G+G  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDGIPGVGEKRKKVLLKHFGSLKKMKEASVTEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           + +A  IY++ 
Sbjct: 578 QNVAETIYSYL 588


>gi|288560479|ref|YP_003423965.1| excinuclease ABC C subunit UvrC [Methanobrevibacter ruminantium M1]
 gi|288543189|gb|ADC47073.1| excinuclease ABC C subunit UvrC [Methanobrevibacter ruminantium M1]
          Length = 615

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 199/628 (31%), Positives = 331/628 (52%), Gaps = 36/628 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +++P+ PG+Y M DI   ++YVGK+ +L+ R+KSY   N  + +   ++S  N++ + V
Sbjct: 8   PDELPQKPGIYIMKDINEEIIYVGKSKSLRNRVKSYFQKNLDSPKTKVLMSHFNSLEYIV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LEAN+IK+ +PR+NI L+DDK +PY+ IT     P +   R  S   G+Y+
Sbjct: 68  TNTEKEALILEANLIKKHRPRYNIRLKDDKRYPYVKIT-DEDFPKIVITRTISK-TGTYY 125

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF  V AV +T+  L++ F +R+      +    PCL  QI  C  PC G+IS E+Y E
Sbjct: 126 GPFTDVTAVRQTVKFLKQLFRIRT-----CKRMDGPCLNSQIDLCYAPCDGQISKEEYKE 180

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241
            + +   F  G  + + + +   M QA  +++YE A + RD+++++  +       +   
Sbjct: 181 HIKKIDLFFQGKYNKIIKDLEIEMKQAAERQEYEKAAVIRDQISSIDEVMKKQFVEFEND 240

Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKP 298
              D  ++ +  + A         G+  G   F +     +T+ +++S F++Q+Y  ++ 
Sbjct: 241 LDQDIIAIAYTIHNAVAVVMNIRNGKIMGKDDFTMDGSENTTSDEVISAFIKQYYGINRH 300

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ +LL E+  +  L+E       G KV + VP++G K +++  A  NA        + 
Sbjct: 301 IPKEVLLEEDIPDKELIEEWLSDLRGNKVSLKVPQKGNKLRLVRMAGKNAEI----IKNQ 356

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
               +  + +  +   L  +P+ IE YD S+I G  AVG  V   +    K QY+KF ++
Sbjct: 357 RQKMENSMMELKRYLNLKKLPRVIEGYDISNISGKLAVGSKVSFLDGKPNKKQYKKFKMN 416

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEE-----------NLNFHPKKQEYSFPSWPDVV 467
                  +D AMM+ +LERR   L ++ E           N     K +       P+++
Sbjct: 417 T---PGPNDFAMMKELLERRLKPLKEHYEKVRINEEHTKHNEAETEKIEPLKLGEEPNLI 473

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           ++DGGKGQL  A  VLK+ N+   I II +AK  +     E +       +++   +  L
Sbjct: 474 VIDGGKGQLGMAVDVLKEYNLT-HIPIIGLAKEFE-----EIYIPNSSFPIIIPQDNEAL 527

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           + +Q++RDE+HRFA+T HRK R K    SPLDEI GIG  RK  LL+ FG    I ++S 
Sbjct: 528 HLLQQVRDESHRFAVTYHRKLRSKKIEESPLDEIEGIGKKRKLELLRHFGDFDSIKKASV 587

Query: 587 ETLASIEGISKKIACKIYNHFHKNTSHT 614
           E L  ++G+++K+A  +YN+FH+     
Sbjct: 588 EELKGVDGMNEKVALNVYNYFHEGEKEQ 615


>gi|324328412|gb|ADY23672.1| excinuclease ABC subunit C [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 594

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 179/611 (29%), Positives = 299/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRVQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY++ 
Sbjct: 578 KNVAETIYSYL 588


>gi|319647258|ref|ZP_08001480.1| UvrABC system protein C [Bacillus sp. BT1B_CT2]
 gi|317390605|gb|EFV71410.1| UvrABC system protein C [Bacillus sp. BT1B_CT2]
          Length = 602

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 184/613 (30%), Positives = 302/613 (49%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 24  LPDQPGCYLMKDRQDTVIYVGKAKILKNRVRSYFSGS-HDAKTQRLVSEIEDFEYIVTSS 82

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDKS+P+I IT+  + P L   R     +G YFGP+
Sbjct: 83  NIEALILEMNLIKKYDPKYNVMLKDDKSYPFIKITN-ERHPKLIVTRKVKKDKGRYFGPY 141

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR CA    +   R CL + + +C  PC  ++S E   +   
Sbjct: 142 PNVQAARETKKLLDRLYPLRKCA----KLPDRVCLYYHLGQCLAPCVYDVSEETNRQLTE 197

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E  +FL GG + +K+++   M +A+    +E A   RD++A +         + N M   
Sbjct: 198 EITRFLKGGYNEVKKELEAKMLEASENLQFERAKEFRDQIAHIESTMEKQKMMLNDMVDR 257

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 258 DVFAYSYDKGWMCVQVFFIRQGKLIERDVSMFPLYREADEEFLTFIGQFYSKNNHFLPKE 317

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           IL+ +  ++  + E+         V +  PK+G K+ ++  A  NA        +     
Sbjct: 318 ILVPDSVDKDMIEELL-------DVNVRQPKRGAKKDLLLLAHKNAKLALKEKFSLIERD 370

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   K   + + P RIE +DNS+I G   V  MVV  +    K +YRK+ + 
Sbjct: 371 EERTIGAIEKLGKALDI-YTPYRIEAFDNSNIQGTDPVSAMVVFLDGKPHKKEYRKYKIK 429

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++K                   PD++++DGGKGQ+SA
Sbjct: 430 T--VEGPDDYGSMREVIRRRYTRVLKEN--------------LPLPDLILIDGGKGQVSA 473

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L ++  + +  + K  K             E + L       Y +QR++DE 
Sbjct: 474 ALDVLENELGLD--VPVAGLVKDDKHRTSN-LLIGDPLEIVQLERNSQEFYLLQRIQDEV 530

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+A+ S LD I G+G  RK+LLL+ FG+VK +  +S E +  + GI 
Sbjct: 531 HRFAISFHRQLRGKSAFQSVLDGIPGVGEQRKKLLLKHFGSVKKMKEASAEDIRKL-GIP 589

Query: 597 KKIACKIYNHFHK 609
            K A  I     K
Sbjct: 590 LKTAQLIEEALKK 602


>gi|170076867|ref|YP_001733505.1| excinuclease ABC subunit C [Synechococcus sp. PCC 7002]
 gi|169884536|gb|ACA98249.1| excinuclease ABC, C subunit [Synechococcus sp. PCC 7002]
          Length = 623

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 193/625 (30%), Positives = 307/625 (49%), Gaps = 42/625 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
           ++P  PGVY M    G +LY+GK+  L+ R++SY      H+ RI  M+ Q+ +I F VT
Sbjct: 22  EIPTEPGVYFMHSRQGDILYIGKSKTLRNRVRSYFRDARLHSPRIEMMVQQVADIEFIVT 81

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121
            TE EAL LEAN+IK+ +P +N+LL+DDK +PY+ IT     P  +  R     +    Y
Sbjct: 82  DTEAEALALEANLIKQHQPYYNVLLKDDKKYPYVCITWSEDYPRFFITRKRHIGSKGDRY 141

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     +  T+  ++R F LR     +F+H  RPCL + I RC G C   IS ++Y 
Sbjct: 142 YGPYVDTRLLRHTLGLMKRIFPLRQRRQPLFKH--RPCLNYDIGRCPGVCQQLISPQEYR 199

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V +      G +  L E +   M QA     +E A   RD++ A+  +          
Sbjct: 200 QTVQKVAMVFQGRSGELIETLTAQMAQAAENLQFEKAAQIRDQIKAIGALNADQKVSLPD 259

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES------TNAQILSYFLR 291
                D  +L  +++   IQ      G+  G   FF                +IL + L 
Sbjct: 260 DRVSRDAIALAADEHHCAIQLFQVRAGRLVGRLGFFTPLPENLGPDLTVEYGKILQHVLE 319

Query: 292 QFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
             Y +      P  IL+     +   LE     + G KV+I  P++  K  +I     NA
Sbjct: 320 THYANVDGVEIPAEILVQYPLRDQEWLEKFLGDRRGNKVQIRQPQRQLKADLIAMVERNA 379

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
               ++   T   +   L+D      LP +PKRIE YD SHI G +AV   VV  +    
Sbjct: 380 QYELSRTQRTATKNLAALEDLASLLDLPELPKRIEGYDISHIQGSNAVASQVVFIDGIPA 439

Query: 409 KNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           K  YR + +   ++     DD A M  ++ RRF + ++ +                 PD+
Sbjct: 440 KQDYRHYKIKNPEIHIGRSDDFASMAEIMRRRFKKGLEKD----------------CPDL 483

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGGKGQLS   GVL++LN+ +++ +IS+AK  +     + +   +   L      P 
Sbjct: 484 IMIDGGKGQLSTVMGVLEELNLADKLNVISLAKKQE-----QVYLPYESNPLKSEKEQPG 538

Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           +  ++R+RDEAHRFA++ HR++R K +  S LD+I G+G  RK+ LL  F ++  +  + 
Sbjct: 539 IQLLRRVRDEAHRFAVSFHRQQRLKSSRRSQLDDIPGLGHHRKKQLLAHFHSLDYLREAK 598

Query: 586 PETLASIEGISKKIACKIYNHFHKN 610
           PE +A ++GI   +A +IY++FH +
Sbjct: 599 PEQIAEVKGIGSHLAQEIYDYFHPS 623


>gi|196044923|ref|ZP_03112157.1| excinuclease ABC, C subunit [Bacillus cereus 03BB108]
 gi|196024411|gb|EDX63084.1| excinuclease ABC, C subunit [Bacillus cereus 03BB108]
          Length = 594

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 179/611 (29%), Positives = 299/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       ++  +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------EHFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRVQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|49481523|ref|YP_038571.1| excinuclease ABC subunit C [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140985|ref|YP_085846.1| excinuclease ABC subunit C [Bacillus cereus E33L]
 gi|118479672|ref|YP_896823.1| excinuclease ABC subunit C [Bacillus thuringiensis str. Al Hakam]
 gi|196034329|ref|ZP_03101738.1| excinuclease ABC, C subunit [Bacillus cereus W]
 gi|196039346|ref|ZP_03106652.1| excinuclease ABC, C subunit [Bacillus cereus NVH0597-99]
 gi|218905744|ref|YP_002453578.1| excinuclease ABC, C subunit [Bacillus cereus AH820]
 gi|225866494|ref|YP_002751872.1| excinuclease ABC, C subunit [Bacillus cereus 03BB102]
 gi|228929566|ref|ZP_04092585.1| UvrABC system protein C [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935829|ref|ZP_04098641.1| UvrABC system protein C [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948242|ref|ZP_04110526.1| UvrABC system protein C [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093615|ref|ZP_04224716.1| UvrABC system protein C [Bacillus cereus Rock3-42]
 gi|229124083|ref|ZP_04253275.1| UvrABC system protein C [Bacillus cereus 95/8201]
 gi|229186752|ref|ZP_04313910.1| UvrABC system protein C [Bacillus cereus BGSC 6E1]
 gi|81394678|sp|Q6HD05|UVRC_BACHK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|81686006|sp|Q633S1|UVRC_BACCZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038023|sp|A0RJC3|UVRC_BACAH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226695571|sp|B7JR24|UVRC_BACC0 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764923|sp|C1ETV9|UVRC_BACC3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|49333079|gb|AAT63725.1| excinuclease ABC, subunit C [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974454|gb|AAU16004.1| excinuclease ABC, subunit C [Bacillus cereus E33L]
 gi|118418897|gb|ABK87316.1| Excinuclease ABC subunit C [Bacillus thuringiensis str. Al Hakam]
 gi|195992871|gb|EDX56830.1| excinuclease ABC, C subunit [Bacillus cereus W]
 gi|196029973|gb|EDX68574.1| excinuclease ABC, C subunit [Bacillus cereus NVH0597-99]
 gi|218539139|gb|ACK91537.1| excinuclease ABC, C subunit [Bacillus cereus AH820]
 gi|225786564|gb|ACO26781.1| excinuclease ABC, C subunit [Bacillus cereus 03BB102]
 gi|228596765|gb|EEK54427.1| UvrABC system protein C [Bacillus cereus BGSC 6E1]
 gi|228659385|gb|EEL15033.1| UvrABC system protein C [Bacillus cereus 95/8201]
 gi|228689824|gb|EEL43630.1| UvrABC system protein C [Bacillus cereus Rock3-42]
 gi|228811600|gb|EEM57937.1| UvrABC system protein C [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228823886|gb|EEM69706.1| UvrABC system protein C [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830145|gb|EEM75763.1| UvrABC system protein C [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 594

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 179/611 (29%), Positives = 298/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRVQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|313891874|ref|ZP_07825479.1| excinuclease ABC, C subunit [Dialister microaerophilus UPII 345-E]
 gi|313119868|gb|EFR43055.1| excinuclease ABC, C subunit [Dialister microaerophilus UPII 345-E]
          Length = 617

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 202/623 (32%), Positives = 328/623 (52%), Gaps = 38/623 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             E +P  PGVY+  D  G+V+YVGKA NL+ R+KSY+ ++ N + ++  MI    ++  
Sbjct: 11  KLENLPSSPGVYRWKDKNGKVIYVGKAVNLKNRVKSYVRNDKNKSPKVISMIKHAEDLDI 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQG 119
           T+T  E+EAL+LE N+IK L+P++NI LRDDK++PY+ +T   K P +Y  R+       
Sbjct: 71  TITKNELEALILECNLIKELQPKYNISLRDDKTYPYLKVTVNEKWPRIYITRNIKRTDGA 130

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGPF  V ++ KT+  + + + +R+C +    + TRPCL + I  CS PC   +S EK
Sbjct: 131 RYFGPFTDVSSLRKTLKIVGKYYPIRTCRNM---NVTRPCLQYHINLCSAPCCNLVSQEK 187

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E+V +      G ++ + + +   M +A+    +E A ++RD + A+  +Q   + + 
Sbjct: 188 YNEYVKKLCNIFEGKSYEIIKTLKEKMKEASENLQFEKAAMYRDEINAVKSVQQRQNIVS 247

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-- 295
                D   +   +N A  +  +  +G+  G   F +    +  +  I++ FL+ FY+  
Sbjct: 248 KEGDFDVIGMARTENYAAFEIFYIRYGRMVGKENFNISGTEDERDESIIAAFLKNFYSSD 307

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351
           +   P+ I++S+  E+  L++          V + VP++G KRK+ E A++NA       
Sbjct: 308 NINIPKEIIISKIPEDFELIKKWLSGIRHNDVSLIVPERGFKRKLKEMAIVNATKYLSDK 367

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             Q    ++  Q  L    +   LP IP+RIE +D SH  G    G MVV       K  
Sbjct: 368 KIQWEHQKMREQGALIKLKEILKLPKIPERIECFDISHNQGSETTGSMVVFVNGRPEKKA 427

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF L        DD   M  V+ERR++                +      PD+++LDG
Sbjct: 428 YRKFKLKTTQG-KPDDFKSMAEVMERRYN----------------DKKIGRNPDLIVLDG 470

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQL+AA  +++K  VE   T+I +AK  +     E +   + E +V++  D +L+ +Q
Sbjct: 471 GKGQLNAAIPLIRKSGVEA--TVIGLAKRME-----EIYLENQTEPIVIDRHDEVLHLLQ 523

Query: 532 RLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDE+HRF I  HR+   K+   S LD I GIGP+R++ L  +F T+  + ++S E L 
Sbjct: 524 FVRDESHRFVINYHRQWISKRNRESILDHIEGIGPVRRKNLWAAFRTLDEMKKASVEELQ 583

Query: 591 SIEGISKKIACKIYNHFHKNTSH 613
            ++GI+KK+A  IYN F      
Sbjct: 584 KVKGINKKVAENIYNFFRMKKDE 606


>gi|229098976|ref|ZP_04229911.1| UvrABC system protein C [Bacillus cereus Rock3-29]
 gi|229105143|ref|ZP_04235794.1| UvrABC system protein C [Bacillus cereus Rock3-28]
 gi|228678324|gb|EEL32550.1| UvrABC system protein C [Bacillus cereus Rock3-28]
 gi|228684474|gb|EEL38417.1| UvrABC system protein C [Bacillus cereus Rock3-29]
          Length = 594

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEIRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDQLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 VSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVILERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|258511831|ref|YP_003185265.1| excinuclease ABC, C subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478557|gb|ACV58876.1| excinuclease ABC, C subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 610

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 185/617 (29%), Positives = 304/617 (49%), Gaps = 42/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PGVY M    G +LYVGKA  L+ R++SY    + T +   ++SQI +  + 
Sbjct: 8   KLDLLPQRPGVYLMKGEGGEILYVGKAKVLRNRVRSYFTGTHDT-KTQVLVSQIRDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT T  EALLLE N+IK+ +P +NI+LRDDKS+PYI +T K + P L   R        Y
Sbjct: 67  VTDTVAEALLLECNLIKQHQPPYNIMLRDDKSYPYIKLT-KERHPRLQIVRQVKRDGAKY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +  + + T   L R + LR C       + + CL + I +C  PC  ++    Y 
Sbjct: 126 FGPYPNATSAQATKRLLDRLYPLRKCKTL----KKQVCLYYHIHQCLAPCVYDVDEATYE 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
               E   FL+GG+ ++  ++ + M  A    ++E A   RD +  +  +       +  
Sbjct: 182 AMAKEISHFLNGGHQDVVRELEQKMQAAAESLEFERAAELRDLIRHIEQVMQEQKVTWTD 241

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F    ++ L  +Q  F   G+             +      +S+  + ++    
Sbjct: 242 GIDRDVFGFAEDRGLLSVQVFFVRNGKLIERQVQIAPH-FDDPLTDFMSFVEQFYHERVD 300

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS- 357
            P+ ILL E     +L  +   K       +  PK+G KR +++ A  NA ++  +K+  
Sbjct: 301 LPKEILLPEGVPSEALAMVVDAK-------VLQPKRGPKRDLVDLACENARQALAEKIQL 353

Query: 358 TEISHQMILKDFTKKFAL--PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            + +    L    +   +     P+RIE +DNS+  G  AV  MVV  +    K++YRK+
Sbjct: 354 IDRNLDRTLGAVMELGQVLAIQPPRRIEAFDNSNFQGVDAVSAMVVFIDGKPAKSEYRKY 413

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +     +  DD   +R V+ RR+S+L++ ++ L              PD+V++DGGKGQ
Sbjct: 414 KIRST--QGPDDYEAIREVVRRRYSRLVREQKPL--------------PDLVVIDGGKGQ 457

Query: 476 LSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           L AA  VL+ +L +E  I +  +AK  +       FF+ + E + +    P  Y ++R++
Sbjct: 458 LRAALSVLEGELGLE--IPVCGLAKDERHRTSQ-LFFMDEEEPVRIERHSPAFYLLERIQ 514

Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFA+  HR RR K    S LDEI G+GP RK+ +L+ FG++K ++ + PE    + 
Sbjct: 515 DEVHRFAVEFHRLRRSKTGFQSILDEIPGVGPERKKAILRRFGSLKAVAAAQPEDFRGL- 573

Query: 594 GISKKIACKIYNHFHKN 610
           GI  K+A +I     + 
Sbjct: 574 GIGDKLAREIVARVREE 590


>gi|228993251|ref|ZP_04153167.1| UvrABC system protein C [Bacillus pseudomycoides DSM 12442]
 gi|228766319|gb|EEM14962.1| UvrABC system protein C [Bacillus pseudomycoides DSM 12442]
          Length = 594

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 173/611 (28%), Positives = 296/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNIP----DKVCLYYHMGQCLAPCVQEVTDEQNQEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              KFL+GG+  ++ ++   M +A+ K ++E A   RD+++ +  I      I +     
Sbjct: 186 GIVKFLNGGHKEVRSELEAKMYEASEKLEFERAKELRDQISHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +          +   P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYEQNNHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V +T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDPELV-------ERFLEVDVTQPKRGKKKDLVELANKNAKIALGEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLDIETP-YRIEAFDNSNIQGTNPVSAMIVFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++++DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIVIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  + K  K             + ++L       Y +QR++DE 
Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHRTSH-LMIGDPPDPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD I G+G  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDGIPGVGEKRKKVLLKHFGSLKKMKEASVTEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           + +A  IY++ 
Sbjct: 578 QNVAETIYSYL 588


>gi|222097986|ref|YP_002532043.1| excinuclease abc subunit c [Bacillus cereus Q1]
 gi|254764924|sp|B9J024|UVRC_BACCQ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|221242044|gb|ACM14754.1| excinuclease ABC, subunit C [Bacillus cereus Q1]
          Length = 594

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 298/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGEQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY++ 
Sbjct: 578 KNVAETIYSYL 588


>gi|332879142|ref|ZP_08446843.1| excinuclease ABC, C subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682942|gb|EGJ55838.1| excinuclease ABC, C subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 593

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 187/623 (30%), Positives = 302/623 (48%), Gaps = 53/623 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PG+YQ  D    ++YVGKA NL+KR+ SY    +   +   ++ +I  I  
Sbjct: 5   LQLQTLPTSPGIYQFYDDTDILIYVGKAINLKKRVSSYFQKTHDNAKTRVLVKKIVRIEH 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ +PR+N+LL+DDKS+P+I +  K + P ++  R        
Sbjct: 65  IVVATESDALLLENNLIKKYQPRYNVLLKDDKSYPWICV-KKERFPRVFSTRRIVKDGSL 123

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S+  V   ++ ++  F LR+C       ++  H+ + CL + +K C GPC G  
Sbjct: 124 YFGPYTSMKTVHTLLDLIKELFPLRNCTYDLSPQNIANHKFKVCLEYHLKNCKGPCEGLQ 183

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           + E Y   + +  + L G       +    MN    +  +E A + + ++ +L + Q  +
Sbjct: 184 TEEDYNNNIQQIVEILKGNFKEALTRFKEEMNVLATEMRFEEAHLIKQKITSLENYQAKS 243

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D FS+  ++    +      +G      T  +K   E T+ ++L Y +  
Sbjct: 244 TIVSSKISNVDVFSIVSDEEYGYVNFLQVAYGAIVRAHTLEIKKKLEETDRELLEYAIID 303

Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                    + I+   E   +              +++T+PK GEK++++E ++ NA   
Sbjct: 304 IRERFYSTSKEIITPFEVTLSE------------GLQLTIPKAGEKKQLLELSVRNAKHF 351

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
             ++         E     IL    +   L   P  IE +DNS+I G + V   VV    
Sbjct: 352 RQERFKQEKIVDPERHTNRILTQMQRDLHLSVPPVHIECFDNSNIQGTNPVSACVVFKNA 411

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YR FN+    V+  +D A M   + RR+ +L+   ++L              P 
Sbjct: 412 KPSKKDYRHFNVKT--VEGPNDFASMEEAVYRRYRRLLDEGQSL--------------PQ 455

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQLS+A   L++L +  +I II IAK  +     E +F +    L L+ R  
Sbjct: 456 LIIIDGGKGQLSSALKALEQLELRGKIAIIGIAKRLE-----EIYFPEDSVPLYLDKRSE 510

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LRDEAHRF IT HR++R K+   S LD I GIG   ++LLLQ F +VK I  +
Sbjct: 511 TLRVIQQLRDEAHRFGITFHRQKRSKSAIVSELDSIEGIGEKTQKLLLQHFKSVKRIQEA 570

Query: 585 SPETLASIEGISKKIACKIYNHF 607
           S E L  + G     A K+Y HF
Sbjct: 571 SLEDLTKVIG---HRAKKVYEHF 590


>gi|152979382|ref|YP_001345011.1| excinuclease ABC subunit C [Actinobacillus succinogenes 130Z]
 gi|189038015|sp|A6VQ29|UVRC_ACTSZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|150841105|gb|ABR75076.1| excinuclease ABC, C subunit [Actinobacillus succinogenes 130Z]
          Length = 608

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 209/619 (33%), Positives = 335/619 (54%), Gaps = 32/619 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+M D    V+YVGKA +L+KR+ SY   N  + +   +++ I  I  T+
Sbjct: 8   LKNVPHDPGVYRMFDKTDTVIYVGKAKDLKKRLSSYFRPNLSSKKTEALVASITRIETTI 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EALLLE N IK  +PR+N+LLRDDKS+PYIL+T K + P +  +R +  IQG YF
Sbjct: 68  TTSETEALLLEHNYIKTFQPRYNVLLRDDKSYPYILLT-KERHPRIAAYRGAKKIQGEYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181
           GP+    AV +T++ LQ+ F +R C +SV+++R+RPCL +QI RC  PC    ++ E+Y 
Sbjct: 127 GPYPHAGAVRETLSLLQKLFPIRQCENSVYKNRSRPCLQYQIGRCCAPCVAGYVTDEEYQ 186

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238
             V  A+ FL G +  + + +   M  A+   D+E+A   RD++ A+  +          
Sbjct: 187 AQVEYARLFLQGKDQQVLDHLIAKMETASRALDFENAARFRDQIQAVRAVIEKQFVSNDR 246

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---- 294
            + MD  S+ +   +AC+Q  F   G+  G  ++F K  + +  +++ + F+ QFY    
Sbjct: 247 LDDMDIISIAYRHGVACVQVLFIRQGKVLGNRSYFPKVPANTDLSELTATFVGQFYLQAH 306

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             +  P +I++  + E    +E    +Q G KV I    +G K K +  A +NA  + T 
Sbjct: 307 QGRTVPNSIVVDHKLEAKEEIEQLLSEQAGRKVSIQDNAKGSKSKYLSLAQMNAKAALTL 366

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           KL          +   +   +     R+E +D SH MG   +   VV  + G  K++YR+
Sbjct: 367 KLKESTLISERYRALRELLDMD-KINRMECFDISHTMGEQTIASCVVFNDAGPFKSEYRR 425

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           FN+    +   DD A M   L++R+ + +  E+                PD++ +DGGKG
Sbjct: 426 FNIEG--ITGGDDYAAMEQALKKRYDRDLTPEK---------------IPDIIFIDGGKG 468

Query: 475 QLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530
           QL+ A     +LNV   +NR  +I IAKG  R AG E   + K G  + L+  +  L+ I
Sbjct: 469 QLNRALKAFGELNVKWDKNRPHLIGIAKGVDRRAGQETLILSKTGREVNLDPDNLALHLI 528

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           Q +RDE+H  AI+ HRK+R+KA   S L+ I G+GP R++ LL+  G ++ +  ++ E +
Sbjct: 529 QHIRDESHNHAISGHRKKRQKAFTQSGLETIEGVGPKRRQALLKYLGGMQGVKNATLEEI 588

Query: 590 ASIEGISKKIACKIYNHFH 608
           AS+ GIS+ +A  I+    
Sbjct: 589 ASVPGISRALAEIIFETLK 607


>gi|288905128|ref|YP_003430350.1| excinuclease ABC (subunit C) [Streptococcus gallolyticus UCN34]
 gi|288731854|emb|CBI13419.1| excinuclease ABC (subunit C) [Streptococcus gallolyticus UCN34]
          Length = 599

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 172/619 (27%), Positives = 294/619 (47%), Gaps = 40/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY H +++T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT   + P L   R        Y
Sbjct: 67  VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITTNEQYPRLMITRQIKKDGAMY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C       +  + ++
Sbjct: 127 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           +  H+ K FL+G ++ + +++   M +A+   ++E A  +RD L A+S ++     +   
Sbjct: 183 DMAHDVKNFLNGQDNKIVDQLKDKMQKASDLMEFERAAEYRDLLQAISTLRTKQRVMSQD 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 243 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYMGQFYRDNKHF 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I + +E +E  +  I   K          P++GEK++++  A+ NA     +    
Sbjct: 303 IPKEIFIPKEIDEELVKAIVDTKIIK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 355

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+I G S V  MVV       K  YRK
Sbjct: 356 LEKDVKKTYGAVENIGELLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K+                  PD++I+DGG+G
Sbjct: 415 FKIKT--VVGPDDYASMREVIYRRYSRVMKDG--------------LVPPDLIIIDGGQG 458

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F    E + L       + +QR++
Sbjct: 459 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 516

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  + + +  
Sbjct: 517 DEVHRFAITFHRQVRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNIQKADIDDIVN-C 575

Query: 594 GISKKIACKIYNHFHKNTS 612
           GI + +A  I     +  +
Sbjct: 576 GIPRNVATAIKEKLSEEEA 594


>gi|226951808|ref|ZP_03822272.1| nuclease subunit of the excinuclease complex [Acinetobacter sp.
           ATCC 27244]
 gi|226837348|gb|EEH69731.1| nuclease subunit of the excinuclease complex [Acinetobacter sp.
           ATCC 27244]
          Length = 599

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 191/605 (31%), Positives = 304/605 (50%), Gaps = 30/605 (4%)

Query: 10  PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69
           PGVY+ML   G +LYVGKA NL+ R+ SY        +   ++++I +I   V  +E EA
Sbjct: 20  PGVYKMLGKDGELLYVGKAKNLKNRVSSYFVKTIEHPKTQALVARIYDIETLVVRSETEA 79

Query: 70  LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASV 128
           LLLE N+IK  +P +NI+LRDDKS+ YI ++     P +   R     Q G +FGP+ S 
Sbjct: 80  LLLEQNLIKLHRPPYNIMLRDDKSYVYIFVSADKPYPRIASGRGKGKHQIGKFFGPYPSA 139

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +   T+ +LQ+ F +R C +S F  R RPCL +QIKRC+ PC G IS E Y E V+ + 
Sbjct: 140 YSARDTLLTLQKLFNVRQCENSYFSQRKRPCLQYQIKRCTAPCVGLISPEDYKEDVNNSI 199

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
           +FL G    L +++   M QA    ++E A+ +RDRL+ L  +Q            D  +
Sbjct: 200 RFLQGDTKELNQELIGKMEQAAEALEFEKAVFYRDRLSLLREVQAQQAVFKIKGEADILA 259

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCPENILL 305
           + H   + C+Q  +   GQ  G  ++F     +     +  +    ++      P  +++
Sbjct: 260 IAHQAGVTCVQIMYVRNGQMLGGKSYFPDMLGDDLGQMLSDFIANFYFQVADEIPVELIV 319

Query: 306 SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI 365
           + E  +   LE +  + +  K++I    +  + +  E A +N   +   KLS  +     
Sbjct: 320 NLEVPDKKQLEEALQQTFNKKIQIKHKVRETRAEWQELAQMNVQHAIKGKLSNHLELNER 379

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
                +    P     IE +D SH MG + +   VV  + G  K  YR+F +    +   
Sbjct: 380 FHQLEQVVGRPIDR--IECFDISHTMGEAPIASCVVFDQGGARKRDYRQFAIQD--ITGG 435

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A MR  L RR+ + +                    PD++++DGGKGQL  A  V+++
Sbjct: 436 DDYAAMRQALIRRYKKNM-------------------LPDLLLIDGGKGQLHMAMEVMQE 476

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L ++    +I ++KG  R  G+E      G  + L      L+ IQ++RDEAHRFAIT H
Sbjct: 477 LELDAF--MIGVSKGEGRKPGLETLHFTDGTKIQLAEDHKALHLIQQVRDEAHRFAITRH 534

Query: 546 RKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R +R K+ + S L+ I G+GP R+R LL  FG ++ +  +S + L  + G+ + +A  IY
Sbjct: 535 RAKRDKRRSSSVLEAIPGLGPKRRRDLLTHFGGIQGVLNASEKKLTLVPGLGEVMARTIY 594

Query: 605 NHFHK 609
              H+
Sbjct: 595 KILHE 599


>gi|291569735|dbj|BAI92007.1| excinuclease ABC subunit C [Arthrospira platensis NIES-39]
          Length = 624

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 205/630 (32%), Positives = 305/630 (48%), Gaps = 39/630 (6%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59
           M  +++P  PGVY M D    +LY+GK+  L+ R++SY    +NH+HRI  MI Q+ +I 
Sbjct: 15  MRLKEIPPVPGVYFMKDGNENILYIGKSKKLRSRVRSYFRDRHNHSHRINLMIQQVTDIE 74

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STI 117
           F VT TE EAL LEA++IK  +P FN+LL+DDK +PY+ IT     P ++  R    S  
Sbjct: 75  FIVTDTEAEALALEAHLIKTHQPHFNVLLKDDKKYPYLCITWSEPYPRIFITRKRSLSNP 134

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +  Y+GP+     +   +  ++R F LR     +F  + RPCL + I RC G C   IS 
Sbjct: 135 KDRYYGPYVDTGLLRSNLQLIKRLFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQEMISP 192

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E Y + V +      G    L E +   M QA  + ++E+A   RDRL  L  +      
Sbjct: 193 EDYHQIVQKVAMVFQGRTEELIENLTAQMQQAAAELNFETAAKLRDRLQGLQSLNQDQKV 252

Query: 238 IYNRM----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES------TNAQILS 287
                    D  +L  +   A +Q      G   G   FF K               I+ 
Sbjct: 253 SLPDETVSLDAIALATDGQQASVQLFQIRAGHLVGRLGFFAKVYPTEKALTSLELGLIIQ 312

Query: 288 YFLRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
             L++ Y        P  I L     +  L+      + G KV +  P++  K  +IE  
Sbjct: 313 RVLQEHYQTVDPVEIPREIFLQYSLPDADLVTDWLSDRKGRKVTLITPQRQSKLDLIEMV 372

Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
             NA+    +       H   L+D T+   LP +P RIE YD SHI G  AV   VV  +
Sbjct: 373 ERNANYELMRVQKLSDRHHQSLQDLTEILDLPDLPHRIEGYDISHIQGSDAVASRVVFID 432

Query: 405 NGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462
               K  YR++ +   +V +   DD A +  V+ RRF                       
Sbjct: 433 GLPAKQHYRQYKIKNPNVHSGRSDDFASLAEVIGRRFRDY-------------HNLEPQD 479

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            PD++++DGGKGQLSA   VL+ L++   + +IS+AK  +     E F   + + L  N 
Sbjct: 480 KPDLIMIDGGKGQLSAVVKVLQDLDILEELKVISLAKRRE-----EIFVPGESQPLTTNP 534

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
             P +  ++RLRDEAHRFA++ HR +R K    S LD+I G+G  R++LLL  F ++  I
Sbjct: 535 EQPGVELLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHRQKLLLGHFRSIDYI 594

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNT 611
             ++P  LA + GI +K+A +IY++FH +T
Sbjct: 595 RIATPTQLAEVNGIGEKLAQQIYDYFHPST 624


>gi|30264586|ref|NP_846963.1| excinuclease ABC subunit C [Bacillus anthracis str. Ames]
 gi|47530056|ref|YP_021405.1| excinuclease ABC subunit C [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187411|ref|YP_030663.1| excinuclease ABC subunit C [Bacillus anthracis str. Sterne]
 gi|65321885|ref|ZP_00394844.1| COG0322: Nuclease subunit of the excinuclease complex [Bacillus
           anthracis str. A2012]
 gi|165871485|ref|ZP_02216132.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0488]
 gi|167635615|ref|ZP_02393927.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0442]
 gi|167641662|ref|ZP_02399907.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0193]
 gi|170688237|ref|ZP_02879447.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0465]
 gi|170708324|ref|ZP_02898768.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0389]
 gi|177653110|ref|ZP_02935397.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0174]
 gi|190566893|ref|ZP_03019809.1| excinuclease ABC, C subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227817301|ref|YP_002817310.1| excinuclease ABC, C subunit [Bacillus anthracis str. CDC 684]
 gi|229604481|ref|YP_002868799.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0248]
 gi|254686991|ref|ZP_05150849.1| excinuclease ABC subunit C [Bacillus anthracis str. CNEVA-9066]
 gi|254724554|ref|ZP_05186337.1| excinuclease ABC subunit C [Bacillus anthracis str. A1055]
 gi|254736623|ref|ZP_05194329.1| excinuclease ABC subunit C [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741661|ref|ZP_05199348.1| excinuclease ABC subunit C [Bacillus anthracis str. Kruger B]
 gi|254754741|ref|ZP_05206776.1| excinuclease ABC subunit C [Bacillus anthracis str. Vollum]
 gi|254757573|ref|ZP_05209600.1| excinuclease ABC subunit C [Bacillus anthracis str. Australia 94]
 gi|81581242|sp|Q81L74|UVRC_BACAN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764921|sp|C3PAA9|UVRC_BACAA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|254764922|sp|C3L7X5|UVRC_BACAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|30259244|gb|AAP28449.1| excinuclease ABC, C subunit [Bacillus anthracis str. Ames]
 gi|47505204|gb|AAT33880.1| excinuclease ABC, C subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181338|gb|AAT56714.1| excinuclease ABC, C subunit [Bacillus anthracis str. Sterne]
 gi|164712782|gb|EDR18312.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0488]
 gi|167510369|gb|EDR85770.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0193]
 gi|167529035|gb|EDR91790.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0442]
 gi|170126699|gb|EDS95582.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0389]
 gi|170667743|gb|EDT18496.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0465]
 gi|172081634|gb|EDT66705.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0174]
 gi|190561884|gb|EDV15853.1| excinuclease ABC, C subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227005799|gb|ACP15542.1| excinuclease ABC, C subunit [Bacillus anthracis str. CDC 684]
 gi|229268889|gb|ACQ50526.1| excinuclease ABC, C subunit [Bacillus anthracis str. A0248]
          Length = 594

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 179/611 (29%), Positives = 298/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRVQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|327439315|dbj|BAK15680.1| nuclease subunit of the excinuclease complex [Solibacillus
           silvestris StLB046]
          Length = 596

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 175/616 (28%), Positives = 287/616 (46%), Gaps = 41/616 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P   G Y M D  G ++YVGKA  L+ R++SY   + H  +   ++S+I +  + 
Sbjct: 8   KLEILPNESGCYIMKDRQGTIIYVGKAKVLKNRVRSYFTGS-HDGKTARLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +++EAL+LE N+IK   P++N+ L DDK++PYI IT+  + P +   R     +  Y
Sbjct: 67  VTSSDLEALILELNLIKLHDPKYNVKLTDDKTYPYIKITN-ERYPRIITTRKVKKDKAKY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +  A  +T   L R + LR C     +     CL + + +C  PC  +I  + Y 
Sbjct: 126 FGPYPNAYAANETRKLLDRLYPLRKCTHLPNQ----VCLYYHLGQCLAPCVKDIEKQVYD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + E  KFL+GG   +K+ + + M  A    ++E A   RD +A +  I      + + 
Sbjct: 182 VMIDEISKFLNGGVEEIKQDLQQKMIDAAENLEFERAKEFRDLIAHIDQIMEKQKIVTDD 241

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F     K   C+Q  F   G+            +E     +             
Sbjct: 242 LSNRDVFGYAVEKGWMCVQVFFVRQGKLIERDVSIFPIYNEPEEEFLTFVGRFYEQPHHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I + +  + T L ++   K          PK+G K+++++ A+ NA  +  +K   
Sbjct: 302 LPKEIFVPKSIDVTILQKLLDVKVVT-------PKRGSKKELVDLAMKNAEIAIHEKFQL 354

Query: 359 EISHQMIL----KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               +       +   +   +P    RIE +DNSH+ G   V  MVV  +    K +YRK
Sbjct: 355 IERQEERTVGACEALAEAMQIPLPL-RIEAFDNSHMHGADPVSAMVVFIDGKPAKKEYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +          DD   M+ V+ RR++++++                   PD++++DGGKG
Sbjct: 414 YKTREA--AKHDDYGAMQEVIRRRYTRVLREN--------------LPLPDLILIDGGKG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+  A+ V++   +   I I  +AK  K +      F    E + L       Y +QR++
Sbjct: 458 QMEVAREVIED-ELGLVIPIAGLAKDEKHNTSQ-LLFGTPPEVVPLKRTSDGFYLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT  R++ +  A  S LD I G+GP RK+ L++ FG+VK I  +S   L    
Sbjct: 516 DEVHRFAITFLRQQHQTNAITSVLDGIEGVGPKRKQQLMKHFGSVKKIREASELQLQE-S 574

Query: 594 GISKKIACKIYNHFHK 609
           G+  K+A  IY HFH+
Sbjct: 575 GVPAKLAEVIYRHFHE 590


>gi|206977739|ref|ZP_03238630.1| excinuclease ABC, C subunit [Bacillus cereus H3081.97]
 gi|217962003|ref|YP_002340573.1| excinuclease ABC subunit C [Bacillus cereus AH187]
 gi|229141250|ref|ZP_04269789.1| UvrABC system protein C [Bacillus cereus BDRD-ST26]
 gi|229198668|ref|ZP_04325369.1| UvrABC system protein C [Bacillus cereus m1293]
 gi|226695574|sp|B7HRG3|UVRC_BACC7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|206744040|gb|EDZ55456.1| excinuclease ABC, C subunit [Bacillus cereus H3081.97]
 gi|217064552|gb|ACJ78802.1| excinuclease ABC, C subunit [Bacillus cereus AH187]
 gi|228584827|gb|EEK42944.1| UvrABC system protein C [Bacillus cereus m1293]
 gi|228642291|gb|EEK98583.1| UvrABC system protein C [Bacillus cereus BDRD-ST26]
          Length = 594

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 178/611 (29%), Positives = 298/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY++ 
Sbjct: 578 KNVAETIYSYL 588


>gi|262375174|ref|ZP_06068408.1| excinuclease ABC, C subunit [Acinetobacter lwoffii SH145]
 gi|262310187|gb|EEY91316.1| excinuclease ABC, C subunit [Acinetobacter lwoffii SH145]
          Length = 599

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 195/610 (31%), Positives = 303/610 (49%), Gaps = 30/610 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            M   PGVY+M    G +LYVGKA NL+ R+ SY        +   ++++I +I+  V  
Sbjct: 15  NMTSLPGVYRMYGKDGELLYVGKAKNLKNRVSSYFVKTLDHPKTQALVARIYDIQTLVVR 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFG 123
           +E EALLLE N+IK   P +NI+LRDDKS+ YI ++     P L   R     Q G +FG
Sbjct: 75  SETEALLLEQNLIKLHHPPYNIMLRDDKSYVYIFVSADKPYPRLASGRGKGKHQVGKFFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S      T+  LQ+ F +RSC +S F +RTRPCL +QIKRCS PC G IS E Y   
Sbjct: 135 PYPSAYTARDTLVVLQKLFNVRSCENSFFANRTRPCLQYQIKRCSAPCVGFISPEDYKAD 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V  + +FL G    L +++   M  A    ++E A+ +RDR+A L  +Q+          
Sbjct: 195 VDNSIRFLQGDTKELNQELIAKMEAAAEALEFEKAVFYRDRMALLREVQSQQAIYKLKGE 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300
            D  S+ +   + C+Q      G+  G  ++F    S+     +  +    ++      P
Sbjct: 255 ADILSIAYQAGVTCVQIMHVRNGKMLGGKSYFPDMLSDDLGQMLADFIANFYFQVADEIP 314

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
             ++++ E  +   LE +  + +G K++I    +  + + +E A +N   +   KL+  I
Sbjct: 315 AELIVNLEVADRKELEAALSQHFGKKIQIKSKVRETRAEWLELAQMNVQHAIQGKLANHI 374

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
                     +    P     IE +D SH MG   V   VV    G  K  YR+F++   
Sbjct: 375 ELNERFHQLEQVVGRPVDR--IECFDISHTMGEDTVASCVVFDSGGARKRDYRQFSIQD- 431

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            ++  DD A MR  L RR+ + +                    PD++++DGGKGQL  A 
Sbjct: 432 -IQAGDDYAAMRQALTRRYKKAL-------------------LPDLLLIDGGKGQLHMAM 471

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            V+++L ++    ++ ++KG  R  G+E      G  + L      L+ IQ++RDEAHRF
Sbjct: 472 EVMQELGLDAF--MVGVSKGEGRKPGLETLHFTDGSKIQLPEDHKALHLIQQVRDEAHRF 529

Query: 541 AITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HR +R KK   S L+ I G+GP R+R LL  FG ++ + ++S   L  + G+   +
Sbjct: 530 AITKHRAKRDKKRGSSVLEVIPGLGPKRRRDLLTHFGGIQGVLKASERDLQLVPGLGSVM 589

Query: 600 ACKIYNHFHK 609
           A  IY   H+
Sbjct: 590 ARMIYKVLHE 599


>gi|254977032|ref|ZP_05273504.1| excinuclease ABC subunit C [Clostridium difficile QCD-66c26]
 gi|255094359|ref|ZP_05323837.1| excinuclease ABC subunit C [Clostridium difficile CIP 107932]
 gi|255316112|ref|ZP_05357695.1| excinuclease ABC subunit C [Clostridium difficile QCD-76w55]
 gi|255518773|ref|ZP_05386449.1| excinuclease ABC subunit C [Clostridium difficile QCD-97b34]
 gi|255651951|ref|ZP_05398853.1| excinuclease ABC subunit C [Clostridium difficile QCD-37x79]
 gi|260684915|ref|YP_003216200.1| excinuclease ABC subunit C [Clostridium difficile CD196]
 gi|260688573|ref|YP_003219707.1| excinuclease ABC subunit C [Clostridium difficile R20291]
 gi|260211078|emb|CBA66452.1| excinuclease ABC subunit C [Clostridium difficile CD196]
 gi|260214590|emb|CBE07159.1| excinuclease ABC subunit C [Clostridium difficile R20291]
          Length = 605

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/624 (32%), Positives = 328/624 (52%), Gaps = 40/624 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ NHT ++  M+  I    + 
Sbjct: 8   LKKLPSEPGVYLMKDKYDHIIYVGKAISLKNRVRQYFQSSKNHTSKVKSMVKNIYKFEYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T +E+EAL+LE N+IKR +P++N++LRDDK++PYI +T     P + K R     +  Y
Sbjct: 68  ITDSELEALILECNLIKRYRPKYNVVLRDDKTYPYIKVTTNEDYPRILKVRRVLKDKAKY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           FGP+ ++ AV  T+  +  T+ +RSC    D   +++TRPCL   I +C GPCTG +S E
Sbjct: 128 FGPYTNITAVNDTLELISSTYPIRSCKIDIDKAIKNKTRPCLNLHINKCLGPCTGNVSKE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + E    LSG    L E +   MN++++   +E A ++RD++ +L  +       
Sbjct: 188 EYGKMIEEIIMCLSGKEEKLMELLKEKMNESSMNFRFEEAAVYRDKIKSLEEMIQKQKID 247

Query: 239 YN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                   D  ++    N AC+Q  F   G+  G   F L+   +S  A ILS F++QFY
Sbjct: 248 ATVSDLNQDVVAMARAHNEACVQVFFIRNGKIVGREHFILEGVMDSPRASILSSFVKQFY 307

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
            ++   P+ +++ +E E++S+LE     + G KV I VP++GEK+ ++E    NA     
Sbjct: 308 NEQEYIPKELIIEDEIEDSSILEEWLSSKKGQKVTIRVPQKGEKKSLVEMVRKNAVEYLE 367

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                           L++  +   L  +P RIE YD S+I G  ++G MVV       K
Sbjct: 368 KFSDMNKRKYEKSIGALEELKQILNLEKLPIRIEAYDISNIQGVDSIGSMVVYTNAKKDK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            +YR++ +    V   +D   M  +++RR                       + PD+++L
Sbjct: 428 KEYRRYKIKT--VIGPNDYDSMAEIVDRRLKH-------------------GNLPDLILL 466

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+SA + VL+  +V+  I +  + K  K         + K + + L+    +  F
Sbjct: 467 DGGKGQVSAVKKVLELNDVD--IPLWGMYKDDKHRTKG---LICKEKEIELDKTTNLYRF 521

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I  +++E H +AIT HR  R KA   S LD+I GIG  RK+ LL  F  V+ I +++ E 
Sbjct: 522 IASIQEEVHNYAITYHRSLRNKALTKSILDDIQGIGEKRKKSLLNHFKDVEAIKKATMEE 581

Query: 589 LASIEGISKKIACKIYNHFHKNTS 612
           L  ++G++K IA  +YN F K  +
Sbjct: 582 LLEVDGMNKSIADNVYNFFRKEEN 605


>gi|126701033|ref|YP_001089930.1| excinuclease ABC subunit C [Clostridium difficile 630]
 gi|255102613|ref|ZP_05331590.1| excinuclease ABC subunit C [Clostridium difficile QCD-63q42]
 gi|255308439|ref|ZP_05352610.1| excinuclease ABC subunit C [Clostridium difficile ATCC 43255]
 gi|119367642|sp|Q180Q8|UVRC_CLOD6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|115252470|emb|CAJ70313.1| Excinuclease ABC subunit C [Clostridium difficile]
          Length = 605

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/624 (32%), Positives = 327/624 (52%), Gaps = 40/624 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ NHT ++  M+  I    + 
Sbjct: 8   LKKLPSEPGVYLMKDKYDHIIYVGKAISLKNRVRQYFQSSKNHTSKVKSMVKNIYKFEYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T +E+EAL+LE N+IKR +P++N++LRDDK++PYI +T     P + K R     +  Y
Sbjct: 68  ITDSELEALILECNLIKRYRPKYNVVLRDDKTYPYIKVTTNEDYPRILKVRRVLKDKAKY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           FGP+ ++ AV  T+  +  T+ +RSC    D   +++TRPCL   I +C GPCTG +S E
Sbjct: 128 FGPYTNITAVNDTLELISSTYPIRSCKIDIDKAIKNKTRPCLNLHINKCLGPCTGNVSKE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + E    LSG    L E +   MN++++   +E A ++RD++ +L  +       
Sbjct: 188 EYGKMIEEIIMCLSGKEEKLMELLKEKMNESSMNFRFEEAAVYRDKIKSLEEMIQKQKID 247

Query: 239 YN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                   D  ++    N AC+Q  F   G+  G   F L+   +S  A ILS F++QFY
Sbjct: 248 ATVSDLNQDVVAMARAHNEACVQVFFIRNGKIVGREHFILEGVMDSPRASILSSFVKQFY 307

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
            ++   P+ +++ +E E++S+LE     + G KV I VP++GEK+ ++E    NA     
Sbjct: 308 NEQEYIPKELIIEDEIEDSSILEEWLSSKKGQKVTIRVPQKGEKKSLVEMVRKNAVEYLE 367

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                           L++  +   L  +P RIE YD S+I G  ++G MVV       K
Sbjct: 368 KFSDMNKRKYEKSIGALEELKQILNLEKLPIRIEAYDISNIQGVDSIGSMVVYTNAKKDK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            +YR++ +    V   +D   M  +++RR                       + PD+++L
Sbjct: 428 KEYRRYKIKT--VIGPNDYDSMAEIVDRRLKH-------------------GNLPDLILL 466

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+SA + VL+  +V+  I +  + K  K         + K + + L+    +  F
Sbjct: 467 DGGKGQVSAVKKVLELNDVD--IPLWGMYKDDKHRTKG---LICKEKEIELDKTTNLYRF 521

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I  +++E H +AIT HR  R KA   S LD+I GIG  RK+ LL  F  V  I +++ E 
Sbjct: 522 IASIQEEVHNYAITYHRSLRNKALTKSILDDIQGIGEKRKKSLLNHFKDVDAIKKATMEE 581

Query: 589 LASIEGISKKIACKIYNHFHKNTS 612
           L  ++G++K IA  +YN F K  +
Sbjct: 582 LLEVDGMNKSIADNVYNFFRKEEN 605


>gi|193215119|ref|YP_001996318.1| excinuclease ABC subunit C [Chloroherpeton thalassium ATCC 35110]
 gi|193088596|gb|ACF13871.1| excinuclease ABC, C subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 640

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 182/634 (28%), Positives = 302/634 (47%), Gaps = 49/634 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             + +P  PGVYQ  D   RV+YVGKA NL+ R++SY  + + H+ +   ++ +I ++  
Sbjct: 33  KLKNLPTSPGVYQFKDKDERVIYVGKAKNLRARVQSYFRNLSEHSGKTRLLVRRIMDLEL 92

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T TEVEAL+LE N+IK+LKPR+NI L+DDKS+PYI++T+    P ++  R+       
Sbjct: 93  ILTGTEVEALILENNLIKQLKPRYNINLKDDKSYPYIVVTN-EPFPRVFPTRNVRRDGSK 151

Query: 121 YFGPFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           Y+GP+     +   ++++      R+  L    +++   + + CL + IK+C GPC    
Sbjct: 152 YYGPYTETRQMRMLLDAISEIFQVRSCSLNMTDENIAARKFKVCLDYHIKKCLGPCEALQ 211

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y   + E KK L G   ++   +   M     +  +E A   + +L AL       
Sbjct: 212 SREDYDAMIDEVKKLLRGKTKDIVRSLESRMKNYAKELKFEYAAEIKRQLEALERYSARQ 271

Query: 236 DSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
             +       D F++    + AC        G+  G+  F+     +   A ++   L +
Sbjct: 272 KVLTTDEIDRDIFAVAREGDDACGTVFKVRDGKLLGSQHFYFSNVEDEPMANLVGRLLEK 331

Query: 293 FYTDKP--CPENILLSEEAEETSLLEISFFKQY-----GYKVKITVPKQGEKRKIIEQAL 345
           +Y +     P  I  +E+      +E    K+        KV   +P+ G+K K+++   
Sbjct: 332 YYLETTDILPNEIFTAEQPSNQDAIEALLQKRMSEIGEQKKVHFVIPQIGDKAKLVDMCA 391

Query: 346 INAHRSHTQKLSTEISH------QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
            NA    ++    +            ++   +   L   P+RIE +DNS+  G   V  M
Sbjct: 392 ANAKHLLSEYQLQKQKRGEAKAIPHAVRSLERDLRLAKPPRRIECFDNSNFQGTDPVASM 451

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           +   +    K+ YR+F +    V+  +D A M  ++ERR++  +                
Sbjct: 452 ICFVDGKPKKSDYRRFKIKT--VEGANDFASMAEIIERRYTGSLAE-------------- 495

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519
               PD++++DGGKGQLS+A  VL+K  V   + +I +AK  +     E FF  +     
Sbjct: 496 SLPMPDLIVVDGGKGQLSSAYAVLQKSGVG--VPVIGLAKRLE-----EVFFPNEQLPHN 548

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTV 578
           L      L  +Q++RDEAHRFAIT HR+ R K    + L EI GIG  +   LL++FG+V
Sbjct: 549 LPKTSSSLKLLQQVRDEAHRFAITFHRELRSKRTLQTELTEIEGIGKTKAEKLLKTFGSV 608

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             + ++S E LA   G  KK A +I+ HF     
Sbjct: 609 AEVKKASAEALAEAVG--KKAAERIFAHFQGKAD 640


>gi|306831206|ref|ZP_07464367.1| excision endonuclease subunit UvrC [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304426772|gb|EFM29883.1| excision endonuclease subunit UvrC [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 633

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 172/619 (27%), Positives = 294/619 (47%), Gaps = 40/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY H +++T +   ++S+I +  + 
Sbjct: 42  KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 100

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT   + P L   R        Y
Sbjct: 101 VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITTNEQYPRLMITRQIKKDGAMY 160

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C       +  + ++
Sbjct: 161 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 216

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           +  H+ K FL+G ++ + +++   M +A+   ++E A  +RD L A+S ++     +   
Sbjct: 217 DMAHDVKNFLNGQDNKIVDQLKDKMQKASDLMEFERAAEYRDLLQAISTLRTKQRVMSQD 276

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 277 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYMGQFYRDNKHF 336

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I + +E +E  +  I   K          P++GEK++++  A+ NA     +    
Sbjct: 337 IPKEIFIPKEIDEELVKAIVDTKIIK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 389

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+I G S V  MVV       K  YRK
Sbjct: 390 LEKDVKKTYGAVENIGELLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 448

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K+                  PD++I+DGG+G
Sbjct: 449 FKIKT--VVGPDDYASMREVIYRRYSRVMKDG--------------LVPPDLIIIDGGQG 492

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F    E + L       + +QR++
Sbjct: 493 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 550

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  + + +  
Sbjct: 551 DEVHRFAITFHRQVRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNIQKADIDDIVN-C 609

Query: 594 GISKKIACKIYNHFHKNTS 612
           GI + +A  I     +  +
Sbjct: 610 GIPRNVATAIKEKLSEEEA 628


>gi|38233900|ref|NP_939667.1| excinuclease ABC subunit C [Corynebacterium diphtheriae NCTC 13129]
 gi|81401396|sp|Q6NH31|UVRC_CORDI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|38200161|emb|CAE49842.1| Putative excinuclease ABC subunit C [Corynebacterium diphtheriae]
          Length = 687

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 187/678 (27%), Positives = 311/678 (45%), Gaps = 74/678 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y    +    R   M++   ++ +TV 
Sbjct: 13  TIPTEPGVYKFRDPEGRVIYVGKAINLRSRLSNYFQDLSVLHPRTRQMVTTATSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IK+  P FN+  RDDK++P + ++   + P  Y +R        Y+G
Sbjct: 73  ASEVEALQLEYTWIKKFDPHFNVKYRDDKTYPVLAVSVGERFPRAYFYRGPQRKGVRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV +T++ L R F +R+C  +VF       RPCLL  I +CS PC G +S  ++
Sbjct: 133 PYSHAWAVRETLDLLTRVFPIRTCTKAVFNRHESLGRPCLLGYIDKCSAPCIGRVSESEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V     F++G   ++  ++   M  A+   D+E A   RD L A+  I      +  
Sbjct: 193 RIIVDGFCSFMAGNTDSVVRRLTNEMISASEALDFEKAARKRDDLNAVRKITEQQAVVLG 252

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYT 295
                D  ++  +   A IQ      G+ RG   + ++   +SES   ++L  FL +FY+
Sbjct: 253 DGTDADVIAVAADDLEASIQLFHVRSGKIRGQRGWIVERTDNSESELEELLQSFLIRFYS 312

Query: 296 DKP------------------------------------CPENILLSEEAEETSLLEISF 319
           D+                                      P+ +L+ +            
Sbjct: 313 DEVAHEDQVSDKELTVARRGVDKQSHESDLANRRINTSVVPKEVLVHKAPANVEQTTAVL 372

Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFAL 375
                  V + VP++G+KR + +    NA  +  Q          +    L++  +   L
Sbjct: 373 RSLRHSNVDVRVPQRGDKRALADTVFANAQEALRQHKIKRVSDLTTRSAALQEIHEALGL 432

Query: 376 PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMV 434
              P RIE  D SHI G   V  +VV  +    K+ YR++ +     + + +D   +  V
Sbjct: 433 DEPPLRIECTDISHIQGTDVVASLVVFEDGLPKKSDYRRYKIKEAAGEGKSNDVGSIAEV 492

Query: 435 LERRFSQLI-----------------KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
           + RRF++                   ++E     +    +  F   P + I+DGG  Q++
Sbjct: 493 VRRRFARYKNDCRMVPQEDEFDGSRFEDESLAGENTVAAKQRFAYSPQLFIVDGGAPQVA 552

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AAQ VL +L + + + +I IAK  +     E +   + + L+L      LY IQ+LRDEA
Sbjct: 553 AAQDVLDELGITD-VALIGIAKRLE-----EIWLPGEEDPLILPRNSQGLYLIQQLRDEA 606

Query: 538 HRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR++R +      LD+I G+GP R+++L+  FG+VK + ++S   +  + GI 
Sbjct: 607 HRFAITFHRQQRSQRMRRSILDDIKGLGPARRKVLVAHFGSVKELKKASESEIMMVNGIG 666

Query: 597 KKIACKIYNHFHKNTSHT 614
             +A  IY   H ++  +
Sbjct: 667 PALAHSIYVALHPDSDDS 684


>gi|255657363|ref|ZP_05402772.1| excinuclease ABC subunit C [Clostridium difficile QCD-23m63]
 gi|296451823|ref|ZP_06893542.1| excision endonuclease subunit UvrC [Clostridium difficile NAP08]
 gi|296879781|ref|ZP_06903755.1| excision endonuclease subunit UvrC [Clostridium difficile NAP07]
 gi|296259302|gb|EFH06178.1| excision endonuclease subunit UvrC [Clostridium difficile NAP08]
 gi|296429252|gb|EFH15125.1| excision endonuclease subunit UvrC [Clostridium difficile NAP07]
          Length = 605

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/624 (32%), Positives = 326/624 (52%), Gaps = 40/624 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ NHT ++  M+  I    + 
Sbjct: 8   LKKLPSEPGVYLMKDKYDHIIYVGKAISLKNRVRQYFQSSKNHTSKVKSMVKNIYKFEYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T +E+EAL+LE N+IKR +P++N++LRDDK++PYI +T     P + K R     +  Y
Sbjct: 68  ITDSELEALILECNLIKRYRPKYNVVLRDDKTYPYIKVTTNEDYPRILKVRRVLKDKAKY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           FGP+ ++ AV  T+  +  T+ +RSC    D   +++TRPCL   I +C GPCTG +S E
Sbjct: 128 FGPYTNITAVNDTLELISSTYPIRSCKIDIDKAIKNKTRPCLNLHINKCLGPCTGNVSKE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + E    LSG    L E +   MN++++   +E A ++RD++ +L  +       
Sbjct: 188 EYGKMIEEIIMCLSGKEEKLMELLKEKMNESSMNFRFEEAAVYRDKIKSLEEMIQKQKID 247

Query: 239 YN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                   D  ++    N AC+Q  F   G+  G   F L+   +S  A ILS F++QFY
Sbjct: 248 ATVSDLNQDVVAMARAHNEACVQVFFIRNGKIVGREHFILEGVMDSPRASILSSFVKQFY 307

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
            ++   P+ +++ +E E++ +LE     + G KV I VP++GEK+ ++E    NA     
Sbjct: 308 NEQEYIPKELIIEDEIEDSCILEEWLSSKKGQKVTIRVPQKGEKKSLVEMVRKNAVEYLE 367

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                           L++  +   L  +P RIE YD S+I G  ++G MVV       K
Sbjct: 368 KFSDMNKRKYEKSIGALEELKQILNLEKLPIRIEAYDISNIQGVDSIGSMVVYTNAKKDK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            +YR++ +    V   +D   M  +++RR                       + PD+++L
Sbjct: 428 KEYRRYKIKT--VIGPNDYDSMAEIVDRRLKH-------------------GNLPDLILL 466

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+SA + VL+  +V+  I +  + K  K         + K + + L+    +  F
Sbjct: 467 DGGKGQVSAVKKVLELNDVD--IPLWGMYKDDKHRTKG---LICKEKEIELDKTTNLYRF 521

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I  +++E H +AIT HR  R KA   S LD+I GIG  RK+ LL  F  V  I +++ E 
Sbjct: 522 IASIQEEVHNYAITYHRSLRNKALTKSILDDIQGIGEKRKKSLLNHFKDVDAIKKATMEE 581

Query: 589 LASIEGISKKIACKIYNHFHKNTS 612
           L  ++G++K IA  +YN F K  +
Sbjct: 582 LLEVDGMNKSIADNVYNFFRKEAN 605


>gi|284053794|ref|ZP_06384004.1| excinuclease ABC subunit C [Arthrospira platensis str. Paraca]
          Length = 624

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 204/630 (32%), Positives = 304/630 (48%), Gaps = 39/630 (6%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59
           M  +++P  PGVY M D    +LY+GK+  L+ R++SY    +NH+HRI  MI Q+ +I 
Sbjct: 15  MRLKEIPPVPGVYFMKDGNENILYIGKSKKLRSRVRSYFRDRHNHSHRINLMIQQVTDIE 74

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STI 117
           F VT TE EAL LEA++IK  +P FN+LL+DDK +PY+ IT     P ++  R    S  
Sbjct: 75  FIVTDTEAEALALEAHLIKTHQPHFNVLLKDDKKYPYLCITWSEPYPRIFITRKRSLSNP 134

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +  Y+GP+     +   +  ++R F LR     +F  + RPCL + I RC G C   IS 
Sbjct: 135 KDRYYGPYVDTGLLRSNLQLIKRLFPLRQRPKPLF--KDRPCLNYDIGRCPGVCQEMISP 192

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E Y + V +      G    L   +   M QA  + ++E+A   RDRL  L  +      
Sbjct: 193 EDYHQIVQKVAMVFQGRTEELIANLTAQMQQAAAELNFETAAKLRDRLQGLQSLNQDQKV 252

Query: 238 IYNRM----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES------TNAQILS 287
                    D  +L  +   A +Q      G   G   FF K               I+ 
Sbjct: 253 SLPDETVSLDAIALATDGQQASVQLFQIRAGHLVGRLGFFAKVYPTEKALTSLELGLIIQ 312

Query: 288 YFLRQFYTDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
             L++ Y        P  I L     +  L+      + G KV +  P++  K  +IE  
Sbjct: 313 RVLQEHYQTVDPVEIPREIFLQYSLPDADLVTDWLSDRKGRKVTLITPQRQSKLDLIEMV 372

Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
             NA+    +       H   L+D T+   LP +P RIE YD SHI G  AV   VV  +
Sbjct: 373 ERNANYELMRVQKLSDRHHQSLQDLTEILDLPDLPHRIEGYDISHIQGSDAVASRVVFID 432

Query: 405 NGFVKNQYRKFNLHPNDVKT--QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462
               K  YR++ +   +V +   DD A +  V+ RRF                       
Sbjct: 433 GLPAKQHYRQYKIKNPNVHSGRSDDFASLAEVIGRRFRDY-------------HNLEPQD 479

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            PD++++DGGKGQLSA   VL+ L++   + +IS+AK  +     E F   + + L  N 
Sbjct: 480 KPDLIMIDGGKGQLSAVVKVLQDLDILEELKVISLAKRRE-----EIFVPGESQPLTTNP 534

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
             P +  ++RLRDEAHRFA++ HR +R K    S LD+I G+G  R++LLL  F ++  I
Sbjct: 535 EQPGVELLRRLRDEAHRFAVSFHRNQRSKRMKRSHLDDIPGLGHHRQKLLLGHFRSIDYI 594

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNT 611
             ++P  LA + GI +K+A +IY++FH +T
Sbjct: 595 RIATPTQLAEVNGIGEKLAQQIYDYFHPST 624


>gi|229158127|ref|ZP_04286196.1| UvrABC system protein C [Bacillus cereus ATCC 4342]
 gi|228625356|gb|EEK82114.1| UvrABC system protein C [Bacillus cereus ATCC 4342]
          Length = 594

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 178/611 (29%), Positives = 297/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGSNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|228923262|ref|ZP_04086552.1| UvrABC system protein C [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836468|gb|EEM81819.1| UvrABC system protein C [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 594

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 178/611 (29%), Positives = 295/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  +L+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|212638424|ref|YP_002314944.1| excinuclease ABC subunit C [Anoxybacillus flavithermus WK1]
 gi|212559904|gb|ACJ32959.1| Excinuclease ABC subunit C [Anoxybacillus flavithermus WK1]
          Length = 607

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 180/611 (29%), Positives = 299/611 (48%), Gaps = 41/611 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY     H  +   ++++I +  + VT +
Sbjct: 26  LPDQPGCYLMKDAHGTVIYVGKAKVLKNRVRSYFTGT-HDGKTLRLVNEIADFEYIVTSS 84

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           ++EAL+LE N+IK+  P++N++L+DDKS+P+I IT     P L   R     +G YFGP+
Sbjct: 85  DLEALILEMNLIKKYDPKYNVMLKDDKSYPFIKIT-GETHPRLIITRTVKKDKGKYFGPY 143

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +T   L R + LR C     +   + CL + + +C GPC  ++S E+  + V 
Sbjct: 144 PNAQAAHETKKLLDRLYPLRKCE----KIPKKVCLYYHMGQCLGPCEYKVSEEENKQIVE 199

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FL+GG   +KE +   M +A  +  +E A  +RD++A +  +      I +     
Sbjct: 200 QITRFLNGGYKEVKEALTEKMMEAAEQLQFERAKEYRDQIAYIEALMEKQKMILHDFVDR 259

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             E     +              P  
Sbjct: 260 DIFGYAYDKGWMCVQVFFIRQGKLIERNVSIFPLYQEPEEEFLTFLGQFYSKHYHLKPRE 319

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I+L  E +    +++        +V +T PK G+K+++++ A  NA  +  +K       
Sbjct: 320 IVLPREIDGEMAMKLL-------EVSVTQPKSGKKKELVDLACKNAQIALQEKFFLIERD 372

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++       +     RIE++DNS+I G  AV  MVV  +    K +YRK+ + 
Sbjct: 373 EERTIRAVERIGGALGISTP-HRIEVFDNSNIQGTDAVAAMVVFIDGKPEKKEYRKYKIK 431

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR++++++                   P+++++DGGKGQ+ A
Sbjct: 432 T--VQGADDYESMREVIRRRYTRVLRER--------------LPLPNLIVVDGGKGQIQA 475

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I I  + K  K        F      + L       Y +QR+++E H
Sbjct: 476 AKEVL-ECELGLSIPIAGLVKDEKHRTSH-LLFGDPPSVISLEKNSQEFYLLQRMQEEVH 533

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K+A +S LD+I G+G  RK+ LLQ FG++K +  ++ E +     I K
Sbjct: 534 RFAITFHRQVRSKSAFHSILDQIPGVGTKRKQALLQHFGSIKKMKEATVEQIQEA-NIPK 592

Query: 598 KIACKIYNHFH 608
            IA KIY    
Sbjct: 593 HIAQKIYEALQ 603


>gi|229192717|ref|ZP_04319676.1| UvrABC system protein C [Bacillus cereus ATCC 10876]
 gi|228590807|gb|EEK48667.1| UvrABC system protein C [Bacillus cereus ATCC 10876]
          Length = 594

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 178/611 (29%), Positives = 295/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  +L+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVILERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|152976918|ref|YP_001376435.1| excinuclease ABC subunit C [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025670|gb|ABS23440.1| excinuclease ABC, C subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 596

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/616 (28%), Positives = 298/616 (48%), Gaps = 43/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 14  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIADFEYIVTSS 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  PR+N+ L+DDK++P+I IT   K P L   R     +G YFGP+
Sbjct: 73  NLEALILELNLIKKYDPRYNMKLKDDKTYPFIKIT-GEKQPRLLITRKVKKDKGKYFGPY 131

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C     +   + CL + + +C  PC  E++ E+  E V 
Sbjct: 132 PNSQSAHETKKLLDRMYPLRKCT----KMPDKVCLYYHMGQCLAPCVNEVTDEQNKEIVD 187

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           +  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I N     
Sbjct: 188 KITKFLNGGHKEIRSELEAKMYEASEKLEFERAKELRDQIAHMDAIMEKQKMIMNDIVDR 247

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +          +   P+ 
Sbjct: 248 DVFGYAVDKGWMCVQVFFIRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYEQNNHFKPKE 307

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I +    +   +       +   +V +T PK+G+K++++E A  NA  +           
Sbjct: 308 IAVPGSIDPELV-------ERFLEVDVTQPKRGKKKELVELANKNAKIALEEKFYLIERD 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +     RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 361 EERTVKAIENLGERLGIDTP-YRIEAFDNSNIQGVNPVSAMIVFIDGKPAKKEYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++++DGGKG L+A
Sbjct: 420 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIVIDGGKGHLAA 463

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I I  + K  K             + ++L       Y +QR++DE 
Sbjct: 464 ASDVLENELGLY--IPIAGLVKDEKHRTSH-LIIGDPPDPVILERNSQEFYLLQRIQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD I G+G  RK++LL+ FG++K +  +S        GI 
Sbjct: 521 HRFAITFHRQLHGKSVIQSALDGIPGVGEKRKKVLLKHFGSLKKMKEASVGEFVEA-GIP 579

Query: 597 KKIACKIYNHFHKNTS 612
           + +A  IY++   N +
Sbjct: 580 QHVAETIYSYLTNNKT 595


>gi|306833315|ref|ZP_07466443.1| excision endonuclease subunit UvrC [Streptococcus bovis ATCC
           700338]
 gi|304424512|gb|EFM27650.1| excision endonuclease subunit UvrC [Streptococcus bovis ATCC
           700338]
          Length = 599

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 172/619 (27%), Positives = 293/619 (47%), Gaps = 40/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY H +++T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT   + P L   R        Y
Sbjct: 67  VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITTNEQYPRLMITRQIKKDGAMY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C       +  + ++
Sbjct: 127 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           +  H+ K FL+G ++ + +++   M +A+   ++E A  +RD L A+S ++     +   
Sbjct: 183 DMAHDVKNFLNGQDNKIVDQLKDKMQKASDLMEFERAAEYRDLLQAISTLRTKQRVMSQD 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 243 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYMGQFYRDNKHF 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I + +E +E  +  I   K          P++GEK++++  A+ NA     +    
Sbjct: 303 IPKEIFIPKEIDEDLVKAIVDTKIIK-------PQRGEKKQLVNLAIKNARMSLQQKFDL 355

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+I G S V  MVV       K  YRK
Sbjct: 356 LEKDVKKTYGAVENIGELLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K+                  PD++I+DGG+G
Sbjct: 415 FKIKT--VVGPDDYASMREVIYRRYSRVLKDG--------------LVPPDLIIIDGGQG 458

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F    E + L       + +QR++
Sbjct: 459 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 516

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  + + +  
Sbjct: 517 DEVHRFAITFHRQVRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNIQKADIDDIVN-C 575

Query: 594 GISKKIACKIYNHFHKNTS 612
           GI + +A  I        +
Sbjct: 576 GIPRNVATAIKAKLSDEEA 594


>gi|171779772|ref|ZP_02920728.1| hypothetical protein STRINF_01609 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281874|gb|EDT47308.1| hypothetical protein STRINF_01609 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 598

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 168/620 (27%), Positives = 293/620 (47%), Gaps = 40/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G+++YVGKA NL+ R++SY H +++T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYIHKDKNGKIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT   + P L   R        Y
Sbjct: 67  VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITVNEQYPRLMITRQIKKDGAMY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C       +  + ++
Sbjct: 127 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCKAHTICHVDHDYFV 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E   + K FL G ++ + + +   M +A+   ++E A  +RD L A+S ++     +   
Sbjct: 183 EMAQDVKNFLDGKDNKIVDGLKDKMQKASDMMEFERAAEYRDLLQAISTLRTKQRVMNQD 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +         +   
Sbjct: 243 MMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYVGQFYRDSKHF 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I + ++ +E  +  +   K          P++GEK++++  A+ NA     +    
Sbjct: 303 IPKEIFIPQDIDEELVKAVVDTKVIK-------PQRGEKKQLVNLAIKNARVSLQQKFDL 355

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+I G S V  MVV       K  YRK
Sbjct: 356 LEKDIRKTHGAIENIGELLNIPKPV-RIEAFDNSNIQGTSPVAGMVVFVNGKPSKKNYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K+                + PD++I+DGG+G
Sbjct: 415 FKIKT--VVGPDDYASMREVIYRRYSRVMKDG--------------LTPPDLIIIDGGQG 458

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F    E + L       + +QR++
Sbjct: 459 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLQRIQ 516

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  + ++  E + +  
Sbjct: 517 DEVHRFAITFHRQLRSKNSFSSKLDGIAGLGPKRKQLLMKHFKSLPNVQKADVEDIIN-C 575

Query: 594 GISKKIACKIYNHFHKNTSH 613
           GI + +A  +     +  + 
Sbjct: 576 GIPRNVAVVVKEKLAEEKAD 595


>gi|118602605|ref|YP_903820.1| excinuclease ABC subunit C [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567544|gb|ABL02349.1| Excinuclease ABC subunit C [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 594

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 194/607 (31%), Positives = 311/607 (51%), Gaps = 29/607 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +   PGVYQM D   +V+YVGKA NL+ R+ SY    +  ++   +++ I + +  
Sbjct: 6   KLKNLTTNPGVYQMFDKQDQVIYVGKAKNLKNRVSSYFVKTHEQNKARVLVANIKDFKVI 65

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE +ALLLE+ +IK+  PR+NILL+D KS+PYI I+   K P +  +R        Y
Sbjct: 66  VTATETQALLLESELIKQHMPRYNILLKDSKSYPYIFIS-HDKHPRVGFYRGKKCQSAQY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ S   V  +++ L++ F +R C +S +R R+RPCL +QI  CS PC  +IS E Y 
Sbjct: 125 FGPYPSAHVVRDSLSLLKKIFKVRQCTNSTYRSRSRPCLEYQIGLCSAPCVNKISDENYQ 184

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN-DSIYN 240
             V     FLSG      E++++ M  A+   ++E A   RD+L  L  IQ  +  S  N
Sbjct: 185 SDVLMMSLFLSGKGRETLERVSKKMQLASKNLEFELAARLRDQLIDLRTIQEQHTSSSSN 244

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
            +D  S+     +  ++  F   G+  G      K  +     Q+LS FL  +Y  K  P
Sbjct: 245 DLDVVSIAQQDGVNGVEVLFIRSGKQIGQVFILPKNSNNQDIKQVLSAFLPLYYLGKNTP 304

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + IL+S +  +  ++             I      +K+  +  A + A  +  Q L ++ 
Sbjct: 305 KQILISHKLSDKKIIAS------ALNTHIIDTPNKDKKHYLNIANLTAKENLNQNLLSKF 358

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
             +  L        L  +P  IE +D SH+MG + V   VV  +     +QYR+F++   
Sbjct: 359 RKKSTLVHLQVILGLGKLPNYIECFDISHMMGEATVASCVVFEKGVPKASQYRQFDIK-- 416

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           ++   DD A M  V+ RR+S+L+K+++ L              PD++ +DGG GQ + A 
Sbjct: 417 NIIPGDDYAAMNQVVYRRYSKLLKDKKPL--------------PDIIFIDGGLGQFNQAI 462

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE---ALVLNMRDPILYFIQRLRDEA 537
            V+  + V++ + ++ IAKG  R AG+E     K +    + L   DP L  +  +R+E+
Sbjct: 463 MVMNSIGVDD-VQLVGIAKGENRKAGLETLITIKDDNVNKINLLPYDPALMLVNHIRNES 521

Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI  HRK+R  +   S L+ I G+G LR+  LL  FG ++ I ++S   +  + GI+
Sbjct: 522 HRFAIKNHRKKRASRRTTSILESIKGVGKLRRMALLNYFGGLQEIKKASIHEIQKVSGIN 581

Query: 597 KKIACKI 603
             +A KI
Sbjct: 582 LVLATKI 588


>gi|327403564|ref|YP_004344402.1| UvrABC system protein C [Fluviicola taffensis DSM 16823]
 gi|327319072|gb|AEA43564.1| UvrABC system protein C [Fluviicola taffensis DSM 16823]
          Length = 596

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 189/626 (30%), Positives = 311/626 (49%), Gaps = 49/626 (7%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +PE PGVYQ  D  G +LYVGKA NL+KR+ SY + N+   +   ++ +I +I++
Sbjct: 5   LKLKTLPEKPGVYQYFDKNGTILYVGKAKNLKKRVSSYFNKNHDHAKTQILVRKIADIQY 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE N+IK+  P++NI L+DDK++P+I I  K   P ++  R        
Sbjct: 65  IVVDTEMDALLLENNLIKKYLPKYNIQLKDDKTYPWICI-KKEPFPRVFSTRLLVKDGSK 123

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S   +   ++ ++  F LR+C      + + +   + CL + I +C GPC  + 
Sbjct: 124 YFGPYPSGRIMHALLDLIRDLFPLRTCALDLATNKIEKGNYKVCLEYHIGKCKGPCEEKQ 183

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           +++ Y   + + +  L G  + + + + + M QA+    +E A   + R+  L   +  +
Sbjct: 184 TAQVYNGMIDQIEGILKGNIYTVIQNLKQLMLQASADFRFEEAHDIKTRIELLEKYKAKS 243

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  +++D  S+  + +   +     + G      T  +K   + T   I+++ L +
Sbjct: 244 TVVSPTIHQVDVVSMVEDNDTVFVNYLVINHGAIIHGITVEVKRKLDETQQDIITFVLPE 303

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA---- 348
                      +L E   +  +            V+   P++G+K+ +I+ +L NA    
Sbjct: 304 LRERFQSNATEILVEADVDWEME----------GVRFFAPQRGDKKALIDLSLRNAKFYR 353

Query: 349 --HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
                  +    E     IL+       L  +P  IE +DNS+I G + V   VV  +  
Sbjct: 354 LEKIKQEKIKDPEKHTNRILETMKTDLRLKELPAHIECFDNSNIQGTNPVSACVVFKDAK 413

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR FN+    V+  DD A MR  + RR+ +L++ E+ L              P +
Sbjct: 414 PSKKDYRHFNVQT--VEGPDDFATMREAVYRRYRRLLEEEQPL--------------PQL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +I+DGGKGQLSAA   L+KL++  +I II IAK  +     E F+      L L+ R   
Sbjct: 458 IIIDGGKGQLSAALEALEKLDLRGKIAIIGIAKRLE-----ELFYPGDSLPLYLDKRSET 512

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ LR+EAHRF IT HR RR K+A S  L+EI GIG    + L+++F +VK +   S
Sbjct: 513 LKVIQHLRNEAHRFGITHHRNRRSKSALSNELEEIPGIGEKTVQDLIKAFKSVKRVKEQS 572

Query: 586 PETLASIEGISKKIACKIYNHFHKNT 611
            E+LA+I G  K  A  I + F+ N+
Sbjct: 573 EESLAAIVG--KAKAQIIRSFFNSNS 596


>gi|218291130|ref|ZP_03495145.1| excinuclease ABC, C subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218238941|gb|EED06149.1| excinuclease ABC, C subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 610

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 185/617 (29%), Positives = 304/617 (49%), Gaps = 42/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PGVY M    G +LYVGKA  L+ R++SY    + T +   ++SQI +  + 
Sbjct: 8   KLDLLPQRPGVYLMKGEGGEILYVGKAKVLRNRVRSYFTGTHDT-KTQVLVSQIRDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT T  EALLLE N+IK+ +P +NI+LRDDKS+PYI +T + + P L   R        Y
Sbjct: 67  VTDTVAEALLLECNLIKKHQPPYNIMLRDDKSYPYIKLT-RERHPRLQIVRQVKRDGAKY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +  + + T   L R + LR C       + + CL + I +C  PC  ++    Y 
Sbjct: 126 FGPYPNATSAQATKRLLDRLYPLRKCKTL----KKQVCLYYHIHQCLAPCVYDVDEATYE 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
               E   FL+GG+ ++  ++ + M  A    ++E A   RD +  +  +       +  
Sbjct: 182 AMAKEISHFLNGGHQDVVRELEQKMQAAAESLEFERAAELRDLIRHIGQVMQEQKVTWTD 241

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F    ++ L  +Q  F   G+             +      +S+  + ++    
Sbjct: 242 GIDRDVFGFAEDRGLLSVQVFFLRNGKLIERQVQIAPH-FDDPLTDFMSFVEQFYHERVD 300

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS- 357
            P+ ILL E     +L  +   K       +  PK+G KR +++ A  NA ++  +K+  
Sbjct: 301 LPKEILLPEGVPSEALAMVVDAK-------VLQPKRGPKRDLVDLACENARQALAEKIQL 353

Query: 358 TEISHQMILKDFTKKFAL--PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            + +    L    +   +     P+RIE +DNS+  G  AV  MVV  +    K++YRK+
Sbjct: 354 IDRNLDRTLGAVMELGQVLAIQPPRRIEAFDNSNFQGVDAVSAMVVFIDGKPAKSEYRKY 413

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +     +  DD   +R V+ RR+S+L++ ++ L              PD+V++DGGKGQ
Sbjct: 414 KIRST--QGPDDYEAIREVVRRRYSRLVREQKPL--------------PDLVVIDGGKGQ 457

Query: 476 LSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           L AA  VL+ +L +E  I +  +AK  +       FF+ + E + +    P  Y ++R++
Sbjct: 458 LRAALSVLEGELGLE--IPVCGLAKDERHRTSQ-LFFMDEEEPVRIERHSPAFYLLERIQ 514

Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFA+  HR RR K    S LDEI G+GP RK+ +L+ FG++K I+ + PE    + 
Sbjct: 515 DEVHRFAVEFHRSRRSKTGFQSILDEIAGVGPERKKAILRRFGSLKAIAAAQPEDFRGL- 573

Query: 594 GISKKIACKIYNHFHKN 610
           GI  K+A +I     + 
Sbjct: 574 GIGDKLAREIVARVREE 590


>gi|157693266|ref|YP_001487728.1| excinuclease ABC subunit C [Bacillus pumilus SAFR-032]
 gi|189038024|sp|A8FG01|UVRC_BACP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157682024|gb|ABV63168.1| excision endonuclease subunit UvrC [Bacillus pumilus SAFR-032]
          Length = 590

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 173/608 (28%), Positives = 290/608 (47%), Gaps = 33/608 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQNTVIYVGKAKILKNRVRSYFTGS-HDAKTQRLVSEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 71  NIEALILELNLIKKYDPKYNVMLKDDKTYPFIKITN-ERHPKLIVTRHVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR CA        R CL + + +C  PC  +IS E   + V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCATLP----DRVCLYYHLGQCLAPCVYDISEETNKQLVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
           E  +FL+GG+  +K+++   M +A  + ++E A   RD++A +              +  
Sbjct: 186 EIIRFLNGGHQQIKKELTEKMQEAAEQLEFERAKELRDQIAYIDSTMEKQKMTMSDLSDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             +     +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSLFPMYQDPEEEFLTFMGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           IL+ +  ++  + ++     +  K            +  + AL       +     E   
Sbjct: 306 ILVPDSVDQEMIEQLLETNVHQPKKGKKKDLLLLAHQNAKIAL---KEKFSLIERDEERS 362

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              +K       + ++P RIE +DNS+I G   V  MVV  +    K +YRK+ +    V
Sbjct: 363 IGAVKQLGDALNI-YMPYRIEAFDNSNIQGADPVSAMVVFQDGKPYKKEYRKYKIKT--V 419

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR V+ RR+++++K+E                 PD++++DGGKGQ++AA  V
Sbjct: 420 TGPDDYASMREVIRRRYTRVLKDE--------------LPLPDLILIDGGKGQINAAIDV 465

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L +  +   + +  + K  K             E + L       Y +QR++DE HRFAI
Sbjct: 466 L-ENELNLSVPVAGLVKDEKHRTSN-LMMGDTLEIVALERNSQAFYLLQRIQDEVHRFAI 523

Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           + HR+ R K A  S LD++ GIG  RK+ LL+ FG+VK +  ++ E      GI K+ A 
Sbjct: 524 SFHRQLRGKNAFQSILDDVPGIGEKRKKQLLKHFGSVKKMKEATIEDFQEA-GIPKQTAE 582

Query: 602 KIYNHFHK 609
            +     K
Sbjct: 583 LLIEALKK 590


>gi|229175227|ref|ZP_04302743.1| UvrABC system protein C [Bacillus cereus MM3]
 gi|228608363|gb|EEK65669.1| UvrABC system protein C [Bacillus cereus MM3]
          Length = 594

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKE--------------SLPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 VSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASLAEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|228941697|ref|ZP_04104244.1| UvrABC system protein C [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974623|ref|ZP_04135189.1| UvrABC system protein C [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981218|ref|ZP_04141518.1| UvrABC system protein C [Bacillus thuringiensis Bt407]
 gi|228778418|gb|EEM26685.1| UvrABC system protein C [Bacillus thuringiensis Bt407]
 gi|228785026|gb|EEM33039.1| UvrABC system protein C [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817909|gb|EEM63987.1| UvrABC system protein C [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942303|gb|AEA18199.1| excinuclease ABC subunit C [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 594

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 AIIKFLNGGHKEVRSELEVKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  +L+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|228917157|ref|ZP_04080715.1| UvrABC system protein C [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228987769|ref|ZP_04147880.1| UvrABC system protein C [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772043|gb|EEM20498.1| UvrABC system protein C [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228842575|gb|EEM87665.1| UvrABC system protein C [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 594

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 297/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  +L+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|301056029|ref|YP_003794240.1| excinuclease ABC subunit C [Bacillus anthracis CI]
 gi|300378198|gb|ADK07102.1| excinuclease ABC subunit C [Bacillus cereus biovar anthracis str.
           CI]
          Length = 594

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 178/611 (29%), Positives = 297/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEG--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRVQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|229169245|ref|ZP_04296958.1| UvrABC system protein C [Bacillus cereus AH621]
 gi|228614228|gb|EEK71340.1| UvrABC system protein C [Bacillus cereus AH621]
          Length = 594

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 295/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTDEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEIRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFHLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      + +  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDNLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 TSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASISEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|206969597|ref|ZP_03230551.1| excinuclease ABC, C subunit [Bacillus cereus AH1134]
 gi|228954788|ref|ZP_04116809.1| UvrABC system protein C [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960784|ref|ZP_04122422.1| UvrABC system protein C [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229048224|ref|ZP_04193793.1| UvrABC system protein C [Bacillus cereus AH676]
 gi|229081771|ref|ZP_04214264.1| UvrABC system protein C [Bacillus cereus Rock4-2]
 gi|229111981|ref|ZP_04241525.1| UvrABC system protein C [Bacillus cereus Rock1-15]
 gi|229129803|ref|ZP_04258770.1| UvrABC system protein C [Bacillus cereus BDRD-Cer4]
 gi|229147077|ref|ZP_04275437.1| UvrABC system protein C [Bacillus cereus BDRD-ST24]
 gi|229152712|ref|ZP_04280899.1| UvrABC system protein C [Bacillus cereus m1550]
 gi|229180784|ref|ZP_04308122.1| UvrABC system protein C [Bacillus cereus 172560W]
 gi|206735285|gb|EDZ52453.1| excinuclease ABC, C subunit [Bacillus cereus AH1134]
 gi|228602762|gb|EEK60245.1| UvrABC system protein C [Bacillus cereus 172560W]
 gi|228630775|gb|EEK87417.1| UvrABC system protein C [Bacillus cereus m1550]
 gi|228636465|gb|EEK92935.1| UvrABC system protein C [Bacillus cereus BDRD-ST24]
 gi|228653719|gb|EEL09590.1| UvrABC system protein C [Bacillus cereus BDRD-Cer4]
 gi|228671545|gb|EEL26845.1| UvrABC system protein C [Bacillus cereus Rock1-15]
 gi|228701616|gb|EEL54109.1| UvrABC system protein C [Bacillus cereus Rock4-2]
 gi|228723211|gb|EEL74587.1| UvrABC system protein C [Bacillus cereus AH676]
 gi|228798919|gb|EEM45895.1| UvrABC system protein C [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228804908|gb|EEM51506.1| UvrABC system protein C [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 594

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 178/611 (29%), Positives = 295/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  +L+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|224476253|ref|YP_002633859.1| excinuclease ABC subunit C [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254764943|sp|B9DPT1|UVRC_STACT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|222420860|emb|CAL27674.1| putative excinuclease ABC subunit C [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 595

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 183/615 (29%), Positives = 294/615 (47%), Gaps = 43/615 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 15  VPFEPGCYLMKDRNNQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTDS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKKGSGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +T   L R +  R       +   + CL + I +C GPC  ++  ++Y +   
Sbjct: 133 PNAYAAVETKKLLDRIYPFRK----CDKMPNKLCLYYHIGQCLGPCVYDVDQKEYDDMTQ 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   ++E A  +RD +  + ++    + +       
Sbjct: 189 EVSDFLNGEDKTIIKNLESRMQAASENLEFEQAKEYRDLIQNIHNLTKKQNIMSADNTAR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  Y +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYYISKGWMCIQVFFVRNGNMIQRDTTMIPLQQTPEEEFYTFIGQFYRLNQHLLPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + + +  ++  +  +   K       I  P +G+K+ ++  A  NA  S   K       
Sbjct: 309 VHVPKNLDKKMIESVVDTK-------ILQPVRGQKKDLVNMANHNAEVSLQNKFELIARD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G  AV  MV   +    K  YRK+ + 
Sbjct: 362 ESRTVKAIEELGEQMGI-QTPIRIEAFDNSNIQGVDAVSAMVTFVDGKPDKKGYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   M+ V+ RR+++++ +                  PD++I+DGGKGQ+S 
Sbjct: 421 T--VEGPDDYKSMQEVIRRRYTRVLNDG--------------LPLPDLIIVDGGKGQMSV 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L ++  I +  + K  K     E  +    E + L       Y +QR++DE 
Sbjct: 465 AIDVLENELGLD--IPVAGLRKNDKHRTS-ELLYGPAAEVVPLKKNSQAFYLLQRIQDEV 521

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HRK R+K +  S LDEI GIGP RK  LL++FG++K +  ++ E L    G+ 
Sbjct: 522 HRFAITFHRKTRQKHSFTSALDEIEGIGPKRKTTLLRTFGSIKKMREATLEDLKEA-GLP 580

Query: 597 KKIACKIYNHFHKNT 611
           +K+A  +    +K  
Sbjct: 581 EKVAESLQKELNKED 595


>gi|229032164|ref|ZP_04188140.1| UvrABC system protein C [Bacillus cereus AH1271]
 gi|228729170|gb|EEL80170.1| UvrABC system protein C [Bacillus cereus AH1271]
          Length = 594

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKE--------------SLPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 VSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|229163507|ref|ZP_04291458.1| UvrABC system protein C [Bacillus cereus R309803]
 gi|228620076|gb|EEK76951.1| UvrABC system protein C [Bacillus cereus R309803]
          Length = 594

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 175/611 (28%), Positives = 295/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTIIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M  A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEIRSELETKMYDASEKLEFERAKELRDQIAHMDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++++DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIVIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  +L+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVLLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|189500701|ref|YP_001960171.1| excinuclease ABC subunit C [Chlorobium phaeobacteroides BS1]
 gi|189496142|gb|ACE04690.1| excinuclease ABC, C subunit [Chlorobium phaeobacteroides BS1]
          Length = 628

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 180/629 (28%), Positives = 282/629 (44%), Gaps = 52/629 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVYQ  +  G V+YVGKA NL+ R+ SY  + +  + +   +   I++I   +T
Sbjct: 13  SLPSSPGVYQFKNARGNVIYVGKAKNLRSRVLSYFRNHSQLSGKTLVLAGHIDDIEVILT 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL+LE N+IK LKPR+NI L+DDK++PY++IT K   P ++  R+      +YFG
Sbjct: 73  SSEVEALILENNLIKELKPRYNINLKDDKTYPYLVIT-KEPFPRIFLTREVRQDGSTYFG 131

Query: 124 PFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+     +   +  +      R+  L+   +++   +   CL + I +C GPC G  S E
Sbjct: 132 PYTETRQLRSVLELISSIFHVRSCRLKLTPENIRNKKFSVCLDYHIHKCKGPCEGFQSEE 191

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y   V E  + L G    L   +   M Q   +  +E A   + ++  L         +
Sbjct: 192 DYNRMVSEIIRLLKGKTSELVGSLREEMKQCAAELKFEQAAELKLQIDGLMKYTERQKVV 251

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D F +    + AC        G+  G+   +     E   A +LS FL+++Y 
Sbjct: 252 TTDPVDRDVFGIERMGDNACGVVFKIREGKLLGSQRMYFSNMEEEPTANLLSGFLKKYYL 311

Query: 296 DKP--CPENILLSEEAEETS------LLEISFFKQY--GYKVKITVPKQGEKRKIIEQAL 345
           + P   P+ I   E            L      ++      V    P+ GEK ++++   
Sbjct: 312 ETPGLIPQEIFTQEALPAEDKASLLKLFSKKHKEEKKGRKSVHFVTPRIGEKARLVDMCR 371

Query: 346 INAHRSHTQKLSTEISH------QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
            NA    ++ L+ +            L    +   L   P RIE +DNSH  G      M
Sbjct: 372 ENARHHLSEYLTEKQKRGELAQENPALTALQETLHLDKKPLRIECFDNSHFQGSDYTSSM 431

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           V        K++Y+KF L    +   DD A M   + RR+S  + NE             
Sbjct: 432 VCFVNGKPRKSEYKKFRLRT--IDGSDDYAAMSEAITRRYSGTLSNE------------- 476

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519
               PD++++DGGKGQ++ A   L K  +   + +I +AK  +     E +F    +   
Sbjct: 477 -LPLPDLIVIDGGKGQVNVAWKTLSKTGIS--VPVIGLAKRLE-----EIYFPSSRDPYN 528

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578
           L    P L  +QR+RDEAHRFAIT HR  RK +   + L EI GIG      LL  FG++
Sbjct: 529 LPKTSPALKLLQRIRDEAHRFAITYHRTLRKSRTLTTILTEIPGIGEKSAMKLLSHFGSI 588

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHF 607
           + I+++  + L  I G   + A  I   F
Sbjct: 589 EQIAKADRKELMKITG--PRTAEAIALFF 615


>gi|229019738|ref|ZP_04176543.1| UvrABC system protein C [Bacillus cereus AH1273]
 gi|229025964|ref|ZP_04182353.1| UvrABC system protein C [Bacillus cereus AH1272]
 gi|228735334|gb|EEL85940.1| UvrABC system protein C [Bacillus cereus AH1272]
 gi|228741555|gb|EEL91750.1| UvrABC system protein C [Bacillus cereus AH1273]
          Length = 594

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 295/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      + +  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTVKAIDNLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 TSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSIIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIAEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|42783693|ref|NP_980940.1| excinuclease ABC subunit C [Bacillus cereus ATCC 10987]
 gi|81408957|sp|Q72ZM1|UVRC_BACC1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|42739622|gb|AAS43548.1| excinuclease ABC, C subunit [Bacillus cereus ATCC 10987]
          Length = 594

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 297/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKHDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKRLGIETP-HRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  +L+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKILLKHFGSLKKMKEASVTEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|108804832|ref|YP_644769.1| excinuclease ABC subunit C [Rubrobacter xylanophilus DSM 9941]
 gi|119367830|sp|Q1AUH1|UVRC_RUBXD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|108766075|gb|ABG04957.1| Excinuclease ABC subunit C [Rubrobacter xylanophilus DSM 9941]
          Length = 611

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/619 (33%), Positives = 314/619 (50%), Gaps = 32/619 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
            +P  PGVY   D  GRVLYVGKA N++ R+ SY   +     +I  +  ++  I F   
Sbjct: 11  HLPASPGVYIFRDGEGRVLYVGKARNIRSRVASYFTRSGDGRPKIAELRERVRQIDFIAA 70

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             E EAL+LEAN+IKR +PRFN  LRDDKS+PYI++T   + P ++  R     +  YFG
Sbjct: 71  RGETEALVLEANLIKRHRPRFNASLRDDKSYPYIVVTTGDEYPRVFATRGPHDPRHRYFG 130

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEKYME 182
           PF S  +V  T++ L +TF  R C       R+  PCL + I R + PC G +S E+Y  
Sbjct: 131 PFPSAGSVHATLDVLNKTFRFRKCRGPEPGRRSGIPCLNYHIGRSAAPCIGAVSKEEYGA 190

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239
            + +   FL G    L  +    M +A  + D+E A   RD  AAL H+++   +     
Sbjct: 191 IIADVIAFLEGRVDGLIREREEQMRRAAAEMDFERAARLRDEAAALRHVRDRQQATIASE 250

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           +  D    Y     AC+Q      G+  G  +F L    E     +   F+ Q+Y     
Sbjct: 251 DSFDAVGAYAEGEEACVQIFAVREGRIVGRDSFLLDNYGEQDAESVALSFVPQYYETAAV 310

Query: 300 PENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
           P  +L+S   EE  + +     +  G +V++  P++G+KR+++E AL NA      + + 
Sbjct: 311 PREVLVSSPDEEALAPIAEHLSRLRGTRVEVRRPQRGDKRRVLELALHNARMGLEHERAM 370

Query: 359 EISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
             + +      L    ++ ALP +P RIE YD S+ MG ++V  MVV       K+QYR+
Sbjct: 371 SEARRSRLSSTLDRLREELALPRLPMRIECYDISNTMGTNSVASMVVFQGGRPAKDQYRR 430

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V+  DD A M  V+ RR  +L+  +E            F   PD+++LDGGKG
Sbjct: 431 FRIKT--VEGADDPASMAEVVRRRLERLLAGDE-----------KFSPAPDLILLDGGKG 477

Query: 475 QLSAAQGVLKKLNVEN---RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           QLSA   VL+ L        I + ++AK  +     E F   +   +VL      L  +Q
Sbjct: 478 QLSAVAEVLEGLGSGGRLPDIPVRALAKREE-----EVFEPGRPGPVVLAPDSAELRLLQ 532

Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R+RDEAHRFA   HRK R +    S LD++ G+GP+RKR +L+ FGT +    +S E L 
Sbjct: 533 RVRDEAHRFANAYHRKLRGRAMTASVLDDLPGVGPVRKRRILEHFGTPQAFLEASLEELE 592

Query: 591 SIEGISKKIACKIYNHFHK 609
           ++ G+  ++A +I+   H+
Sbjct: 593 AVPGLPGRVAREIHARLHR 611


>gi|91199963|emb|CAJ73005.1| similar to uvrABC system protein C (UvrC exinuclease) [Candidatus
           Kuenenia stuttgartiensis]
          Length = 610

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 195/619 (31%), Positives = 311/619 (50%), Gaps = 29/619 (4%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59
           +  + +P  PGVY M D   +V+YVGKA NL+ R++SY            ++I  + +I 
Sbjct: 5   LKLKNVPVSPGVYLMKDAKHKVIYVGKAKNLKNRVRSYFQKGTGDRLYTEYLIKHVVDID 64

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119
           F +T TE EAL+LE N IK+ KP+FNI LRDDK+F  I +      P     R       
Sbjct: 65  FVLTETEKEALILENNFIKQFKPKFNINLRDDKNFLCIKLETNKDFPYPKVVRQKEDDGA 124

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGP+AS  AV +T+  +  T  +R C D+ F+ RT+PCL +QI +C GPC G I    
Sbjct: 125 MYFGPYASARAVRETLRYINDTIPVRKCRDNAFKSRTKPCLYYQIHKCLGPCCGLIDRAG 184

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI- 238
           Y   + +    L G   +L   + + M + + +  YE A   RD++ ++           
Sbjct: 185 YKTLIDQVILLLKGKQEDLISILRKQMYEESKQLRYEKAAKLRDQIQSIEQTVEKQRINS 244

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
             +   D F  Y   N   I+  F   G      ++ L  +  +      S+  + +   
Sbjct: 245 LTFIDRDVFGYYLTDNDVYIEVMFIRSGNMEDIASYRLSINHTTIEEVFRSFLNQFYSQT 304

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  +++   + +  LLE    ++ G KV +  PK+G+K ++IE A  NA  ++    
Sbjct: 305 RFIPSEVIIPVNSPDAVLLEEWLTERKGKKVSVFCPKRGDKLRLIEMAQKNAMNAYKVSQ 364

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + + ++   L+       L ++P+RIE +D S+I G  AVG MV        K++Y++F 
Sbjct: 365 TQDDNYSRTLQALKDVIGLRNLPERIECFDISNIFGKQAVGSMVTFKCGMPDKSKYKRFR 424

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    V   DD AMM  VL RR+ + ++  +                PD+V++DGGKGQL
Sbjct: 425 IKT--VDQIDDYAMMHEVLLRRYKRAVEEGD---------------LPDLVMVDGGKGQL 467

Query: 477 SAAQGVLKKLNVENRITIISIAKG------PKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
             A  V ++L + +   +++++K       PK   G +         ++L    P+L F+
Sbjct: 468 GVALRVFEELAINDT-DLLALSKDRGKSGIPKGEQGEQVHAPHIPHPILLPSSSPVLLFL 526

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            ++RDEAHRFAI  HRK R K    SPLDEI GIG +RK+ L++ FG+++ I  ++   L
Sbjct: 527 AKIRDEAHRFAIAYHRKLRDKEYYKSPLDEIPGIGIIRKKALIKRFGSIEGIRNATINQL 586

Query: 590 ASIEGISKKIACKIYNHFH 608
             I  +  K+A ++YNHFH
Sbjct: 587 TEIGKLPAKLANEVYNHFH 605


>gi|229072023|ref|ZP_04205233.1| UvrABC system protein C [Bacillus cereus F65185]
 gi|228711182|gb|EEL63147.1| UvrABC system protein C [Bacillus cereus F65185]
          Length = 594

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 295/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           +  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 KIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  +L+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|85858550|ref|YP_460752.1| nuclease subunit of the excinuclease complex [Syntrophus
           aciditrophicus SB]
 gi|119367849|sp|Q2LR71|UVRC_SYNAS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|85721641|gb|ABC76584.1| nuclease subunit of the excinuclease complex [Syntrophus
           aciditrophicus SB]
          Length = 618

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 197/620 (31%), Positives = 308/620 (49%), Gaps = 34/620 (5%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PGVY M D AG++LYVGKA NL+ R ++Y    +    I  ++S+I++I F +T TE
Sbjct: 14  PRTPGVYLMKDAAGKILYVGKAKNLKSRTRAYFSGTDSRAMIPFLVSRIHDIEFILTETE 73

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EAL+LE N+IK   PR+NI  RDDK++  I        P     R        YFGP+ 
Sbjct: 74  KEALILENNLIKEHHPRYNICFRDDKAYFNIRADLNEPFPRFQLVRRPRKDGAKYFGPYP 133

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  +  +T+  LQ  F LR+C D+  + RTRPCL +QIKRC  PC G I+SE Y++ V +
Sbjct: 134 SSASARETLQFLQSIFPLRTCRDAELKSRTRPCLEYQIKRCLAPCVGRINSEDYLQMVRD 193

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRMD 243
              FL G  +NL  ++   M  A  + +YE A   RDR+ A+             +   D
Sbjct: 194 GVSFLEGRGNNLLRELRERMKMAAEQMNYEEAAFLRDRIRAIEETLERQRMVSMTFKDQD 253

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F LY   +L  +       G+  G+    L      T   + S  ++ +      P+ I
Sbjct: 254 IFGLYREGHLIQVCILLIRQGKILGSRLLPLLKFEGETADMLSSLLMQYYDQSVDIPQEI 313

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           L+    E+  ++     ++ G  + I +P++G   +++  A  NA      +  +     
Sbjct: 314 LIPASIEDRQVIREWLEEKRGKGLSILIPRKGRGLELLHIAEQNAEHGFKMERKSLDDSD 373

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             L+   ++  L   P++IE +D S+I G  AV  MV   +   +K+ YR+F +    V 
Sbjct: 374 ESLRLLMERLHLRRFPRKIEAFDISNIGGRLAVAAMVTFQDGRPLKSGYRRFRIRT--VH 431

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD AMM   L+RR+                      + PD++++DGGKGQL+ A  +L
Sbjct: 432 GADDYAMMYEALKRRYQ------------------GKENLPDLIVVDGGKGQLAVAFSLL 473

Query: 484 KKLNVENRITIISIAK---------GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           K L++  +  +I +AK         G    +    +   K EAL L+    +L+ +QR+R
Sbjct: 474 KDLSISGQ-DVIGLAKERVNGVTVQGGVNKSEDRVYLPHKKEALYLSRWPAVLFLLQRIR 532

Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFA++ HR  + ++ + S LD+I G+G +RK+ LL SFG +  I  ++ E L  +E
Sbjct: 533 DEAHRFAVSYHRSLKTRSDFMSLLDDIPGVGEVRKKALLLSFGDLARIREATVEELTQVE 592

Query: 594 GISKKIACKIYNHFHKNTSH 613
           GI K +  KI+   H +   
Sbjct: 593 GIGKDLGEKIHAFLHNDQRS 612


>gi|126652659|ref|ZP_01724820.1| excinuclease ABC subunit C [Bacillus sp. B14905]
 gi|126590508|gb|EAZ84626.1| excinuclease ABC subunit C [Bacillus sp. B14905]
          Length = 596

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 176/617 (28%), Positives = 287/617 (46%), Gaps = 39/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M D  G ++YVGKA  L+ R++SY     H  +   ++S+I +  + 
Sbjct: 8   KLDILPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGT-HEGKTQRLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EAL+LE N+IK   P++N++L DDK++PY+ IT+  K P L   R     +  Y
Sbjct: 67  VTSSNIEALILELNLIKLHDPKYNVMLTDDKTYPYLKITN-EKHPRLITTRKVKKDKAKY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +  A  +T   L R + LR       +  ++ CL + + +C  PC  +I    Y 
Sbjct: 126 FGPYPNAYAASETKKLLDRLYPLRK----CVQLPSKVCLYYHMGQCIAPCVKQIDGHVYQ 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238
           E + +  KFL+GG   +K+++   M  A    ++E A   RD++A +  +          
Sbjct: 182 EMIEDMTKFLNGGVEAVKKELEIKMLAAAENLEFERAKEFRDQIAHIDTVMQKQKIVSSD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F     K   C+Q  F   G+             ++    +          +  
Sbjct: 242 TTNRDIFGYAVEKGWMCVQVFFVRQGKLIERDVSIFPIYQDAEEEFLTFVGRFYEKPEHI 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ + + +  +   L E+   K          PK+G+K+++++ A  NA  + + K   
Sbjct: 302 KPKEVFIPQAIDGAILTELLGIKVLT-------PKRGQKKELVDLATKNAEIAVSAKFQL 354

Query: 359 EISHQMIL---KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
               +       +          P RIE +DNSH+ G  AV  MVV  +    K +YRK+
Sbjct: 355 IERQEERTIGACEALGDAMGITTPLRIEAFDNSHMHGTDAVSAMVVFIDGKPAKKEYRKY 414

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
                     DD   M+ V+ RR+ +++K                   PD+V++DGGKGQ
Sbjct: 415 KTRTA--AKHDDYGAMQEVIRRRYIRVLKEG--------------LPLPDLVLIDGGKGQ 458

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           +  A+ VL+   +   I I  +AK  K +      F    E + L       Y +QR++D
Sbjct: 459 MEVAREVLED-ELGLVIPIAGLAKDDKHNTSQ-LLFGDPPEVIALKRTSDGFYLLQRIQD 516

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HRFAIT  R++ +K A  S LD+I G+GP RK+ LL+ FG+VK I  +S   L    G
Sbjct: 517 EVHRFAITFLRQQHEKHAIQSVLDQIEGVGPKRKQQLLKHFGSVKKIREASELALQEA-G 575

Query: 595 ISKKIACKIYNHFHKNT 611
           +   +A  IY +F + T
Sbjct: 576 MPANLANHIYAYFQQET 592


>gi|75762575|ref|ZP_00742428.1| Excinuclease ABC subunit C [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903037|ref|ZP_04067176.1| UvrABC system protein C [Bacillus thuringiensis IBL 4222]
 gi|74489937|gb|EAO53300.1| Excinuclease ABC subunit C [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228856630|gb|EEN01151.1| UvrABC system protein C [Bacillus thuringiensis IBL 4222]
          Length = 594

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/610 (29%), Positives = 292/610 (47%), Gaps = 41/610 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  +L+   +   I +  + K  K             E +VL       Y +QR++DE H
Sbjct: 462 ASDILED-ELGLYIPMAGLVKDDKHKTSH-LIIGDPPEPVVLERNSQEFYLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ K
Sbjct: 520 RFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMPK 578

Query: 598 KIACKIYNHF 607
            +A  IY + 
Sbjct: 579 NVAETIYTYL 588


>gi|110596791|ref|ZP_01385081.1| excinuclease ABC, C subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110341478|gb|EAT59938.1| excinuclease ABC, C subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 637

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 182/634 (28%), Positives = 295/634 (46%), Gaps = 52/634 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
               +P  PGVYQ ++  GRV+YVGKA NL+ R++SY  +      +   ++S I+N   
Sbjct: 30  KLSSLPSSPGVYQFINDKGRVIYVGKAKNLRNRVRSYFRNPQQLFGKTLVLVSHIDNFEV 89

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +EVEAL+LE N+IK LKPR+N+ L+DDK++PY++IT+    P ++  R       +
Sbjct: 90  IITSSEVEALILENNLIKELKPRYNVNLKDDKTYPYLVITN-EPFPRIFLTRQVRRDGST 148

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEI 175
           +FGP+     +   ++ L   F +RSC       ++  H+ + CL + I +C GPC G  
Sbjct: 149 WFGPYTEAGQLRTILDLLGSIFPIRSCKHRLSPENIAAHKFKVCLDYHIHKCKGPCEGLQ 208

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E+Y+  + E  + L G    +   +   M     +  +E A   + +L +L       
Sbjct: 209 SEEEYLLMIGEIIRLLKGRTSAMIRTLTERMQYFAAELKFEQAAELKAQLDSLKRYAERQ 268

Query: 236 DSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
             +       D F++   ++ AC        G+  G+   ++   S  +   + S  L +
Sbjct: 269 KVVSGDALDRDVFAVASGEDDACGVVFKIREGKLLGSQRIYMNNTSGESEEVLQSRVLEK 328

Query: 293 FYTD--KPCPENILLSEEAEETSLLE--------ISFFKQYGYKVKITVPKQGEKRKIIE 342
           +Y +  +  P+ ILL +   +                 KQ   +++  VP+ GEK  ++E
Sbjct: 329 YYLETLELIPDEILLRKPLTDEEESALRALLTEKQKEEKQEKKQIRFLVPQIGEKAHLME 388

Query: 343 QALINAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAV 396
               NA     + L  +       ++        +   L  IP+RIE +DNSH+ G   V
Sbjct: 389 MCHQNARHHLEEYLIQKQKRGEAAREHYGLIALKELLHLSVIPQRIECFDNSHLQGTDYV 448

Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456
             MV   +    K+ YRKF L     +  DD A M  V+ RR+   +  E          
Sbjct: 449 SSMVCFEKGKPKKSDYRKFKLKS--FQGSDDYAAMEEVIHRRYGGSLARE---------- 496

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
                + PD++I+DGGKGQ++ A   L  L +     +I +AK  +     E F     +
Sbjct: 497 ----LALPDLIIVDGGKGQVNTAFTALNALGISC--PVIGLAKRIE-----EIFTPHAPD 545

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSF 575
              L    P L  +Q+LRDEAHRFA+T HRK R ++   + L  I GIG      LL+ F
Sbjct: 546 PFNLPKTSPALKLLQQLRDEAHRFAVTYHRKLRTERTLQTELTTIEGIGEKTAFKLLKQF 605

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           G+   +SR++ E L +  G   K A  +Y  +H 
Sbjct: 606 GSADAVSRATIEELQAATG--AKSAQAVYLFYHP 637


>gi|194017145|ref|ZP_03055757.1| excinuclease ABC, C subunit [Bacillus pumilus ATCC 7061]
 gi|194011013|gb|EDW20583.1| excinuclease ABC, C subunit [Bacillus pumilus ATCC 7061]
          Length = 590

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 174/608 (28%), Positives = 291/608 (47%), Gaps = 33/608 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQNTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVSEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 71  NIEALILELNLIKKYDPKYNVMLKDDKTYPFIKITN-ERHPKLIVTRHVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR CA        R CL + + +C  PC  +IS E   + V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCATLP----DRVCLYYHLGQCLAPCVYDISEETNKQLVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
           E  +FL+GG+  +K+++   MN+A  + ++E A   RD++A +              +  
Sbjct: 186 EIIRFLNGGHQQIKKELTEKMNEAAEQLEFERAKELRDQIAYIDSTMEKQKMTMSDLSDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             +     +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSLFPMYQDPEEEFLTFMGQFYAKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           IL+ +  ++  + ++     +  K            +  + AL       +     E   
Sbjct: 306 ILVPDSVDQEMIEQLLETNVHQPKKGKKKDLLLLAHQNAKIAL---KEKFSLIERDEERS 362

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              +K       + ++P RIE +DNS+I G   V  MVV  +    K +YRK+ +    V
Sbjct: 363 IGAVKQLGDALNI-YMPYRIEAFDNSNIQGADPVSAMVVFQDGKPYKKEYRKYKIKT--V 419

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A MR V+ RR+++++K+E                 PD++++DGGKGQ++AA  V
Sbjct: 420 TGPDDYASMREVIRRRYTRVLKDE--------------LPLPDLILIDGGKGQINAAIDV 465

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L +  +   + +  + K  K             E + L       Y +QR++DE HRFAI
Sbjct: 466 L-ENELNLSVPVAGLVKDEKHRTSN-LMMGDTLEIVALERNSQAFYLLQRIQDEVHRFAI 523

Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           + HR+ R K A  S LD++ GIG  RK+ LL+ FG+VK +  +S +      GI K+ A 
Sbjct: 524 SFHRQLRGKNAFQSILDDVPGIGEKRKKQLLKHFGSVKKMKEASIQDFQEA-GIPKQTAE 582

Query: 602 KIYNHFHK 609
            +     K
Sbjct: 583 LLMEALKK 590


>gi|295132065|ref|YP_003582741.1| UvrABC system protein C [Zunongwangia profunda SM-A87]
 gi|294980080|gb|ADF50545.1| UvrABC system protein C [Zunongwangia profunda SM-A87]
          Length = 600

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 181/629 (28%), Positives = 305/629 (48%), Gaps = 52/629 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P+ PGVYQ  D  G++LYVGKA NL+KR+ SY    + +HRI  M+ +I+ IR 
Sbjct: 8   VQLKTLPDSPGVYQYFDKNGKILYVGKAKNLKKRVTSYFTKRHDSHRIGVMVKKIHEIRH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +E +ALLLE N+IK+L+PRFN++L+DDK++P+I I    + P ++  R        
Sbjct: 68  IVVSSETDALLLENNLIKKLQPRFNVMLKDDKTYPWICI-KNERFPRVFPTRRLIKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           Y+GPF S   V   ++ ++  + LR+C      D +  ++ + CL + +  C GPC G  
Sbjct: 127 YYGPFTSFKTVNTLLDLIKGLYKLRTCNYDLVEDKIRDNKYKVCLEYHLGNCKGPCEGYQ 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
              +Y   +   ++ + G   +   +    M +     ++E A   ++++  L + Q+ +
Sbjct: 187 GEAEYNRNIEHIRQIVKGNFKDSLSQFREQMQEHAENMEFEDAQRIKNKIEVLENYQSRS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  N +D FS+  ++    +       G    + T  +K   + T+ ++L   + +
Sbjct: 247 TVVNPKINNVDVFSVISDEGYGYVNFLQLMHGSIIRSHTIEMKKKLDETDEELLELGITE 306

Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                      I +  + +                +K+TVPK G+KRKI+E +  NA   
Sbjct: 307 IRQRFNSKSPEIYVPFKVDAGD------------DIKVTVPKLGDKRKIVELSERNAKYY 354

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
             ++         +     ++    +   L   P+ IE +DNS+I G + V   VV    
Sbjct: 355 RQERFKQMKIVDPDRHVNRVMAQMKEDLRLSVEPRHIECFDNSNIQGTNPVAACVVFKNG 414

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YRKFN+    V+  +D A M  V+ RR+ +L+   E L              P 
Sbjct: 415 KPSKKDYRKFNIKT--VEGPNDFASMEEVVYRRYKRLLNEGEEL--------------PQ 458

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQL +    L+ L +   + II IAK  +     E F+      L L+ +  
Sbjct: 459 LIIVDGGKGQLRSGLKALETLGLRGEVAIIGIAKRLE-----ELFYPGDPVPLYLDKKSE 513

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LR+EAHRF IT HR +R K+   + LD I GIG      LL+SF ++K +  +
Sbjct: 514 TLKIIQQLRNEAHRFGITFHRNKRSKSALNTELDSIKGIGEKTVVELLKSFRSLKRVKEA 573

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSH 613
           S ++LA + G     A  +Y+++H  +S 
Sbjct: 574 SEKSLADVVG--SAKARIVYDYYHPESSE 600


>gi|218899675|ref|YP_002448086.1| excinuclease ABC, C subunit [Bacillus cereus G9842]
 gi|226695572|sp|B7IJ18|UVRC_BACC2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|218542605|gb|ACK94999.1| excinuclease ABC, C subunit [Bacillus cereus G9842]
          Length = 594

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/610 (29%), Positives = 292/610 (47%), Gaps = 41/610 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMDQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  +L+   +   I +  + K  K             E +VL       Y +QR++DE H
Sbjct: 462 ASDILED-ELGLYIPMAGLVKDDKHKTSH-LIIGDPPEPVVLERNSQEFYLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ K
Sbjct: 520 RFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMPK 578

Query: 598 KIACKIYNHF 607
            +A  IY + 
Sbjct: 579 NVAETIYTYL 588


>gi|297583696|ref|YP_003699476.1| excinuclease ABC subunit C [Bacillus selenitireducens MLS10]
 gi|297142153|gb|ADH98910.1| excinuclease ABC, C subunit [Bacillus selenitireducens MLS10]
          Length = 593

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 179/614 (29%), Positives = 292/614 (47%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y M +    V+YVGKA  L+ R++SY   + H  +   ++S+I +  + 
Sbjct: 7   KLDLLPAQPGCYLMKNKHQTVIYVGKAKVLKNRVRSYFTGS-HDQKTQMLVSEIADFEYI 65

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +E+EALLLE N+IK+ +PR+N+LL+DDKS+P+I IT++   P L   R+       Y
Sbjct: 66  VTSSEIEALLLEQNLIKKHEPRYNVLLKDDKSYPFIKITNEE-HPRLITTRNVKKDGAKY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +  +  +T   L R + LR C         R CL + I +C  PC  E+++++  
Sbjct: 125 FGPYPNAYSANETKKLLDRIYPLRKCRTLP----DRVCLYYHIGQCLAPCEFEVTADQNK 180

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             V +  KFL+GG+  +KE I + M +A+ + ++E A   RD++  + ++          
Sbjct: 181 TMVQDITKFLNGGHKEVKESIEKKMYEASEEMNFERAKELRDQMVHIENVMEKQKITIAD 240

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F    +K   C+Q  F   G+             E  +                
Sbjct: 241 QTNRDVFGFEVDKGWMCVQVFFVRQGKLIERDVSLFPVYQEPVDDFYTFIGQFYLEEHHK 300

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354
            P  I +    +   + +    K          PK+G+K+++++ A  NA          
Sbjct: 301 KPNEIFVQSGVDTGLVSDFLDVKVLE-------PKRGQKKELVDLARKNASISLKEKFDL 353

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               E      +++  +   +     RIE +DNS+I G   V  MV   +    K  YRK
Sbjct: 354 IEKNEKKTIHAIQELGQVMKIDTP-YRIEAFDNSNIQGVDPVSAMVSFLDGKPDKKNYRK 412

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V+  DD   MR V+ RR+ +L+  E+ L              PD++++DGGKG
Sbjct: 413 YKVKT--VQGPDDYESMREVIRRRYKRLLTEEQPL--------------PDLIVIDGGKG 456

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+SAAQ VL+   +   I +  + K  K             E + L       Y +QR++
Sbjct: 457 QISAAQSVLED-ELGQTIPVCGLVKDDKHRTSQ-LMAGDPPEVISLKRTSEAFYLLQRIQ 514

Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR  RKK+ + S LD+++GIG  RKR LL++FG++K I ++S E +    
Sbjct: 515 DEVHRFAITFHRNVRKKSQFQSILDDVDGIGEKRKRTLLKTFGSLKRIKQASVEEIERA- 573

Query: 594 GISKKIACKIYNHF 607
           GI + +A  +    
Sbjct: 574 GIPQSVASALKRAI 587


>gi|218235241|ref|YP_002369315.1| excinuclease ABC subunit C [Bacillus cereus B4264]
 gi|226695573|sp|B7HF33|UVRC_BACC4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|218163198|gb|ACK63190.1| excinuclease ABC, C subunit [Bacillus cereus B4264]
          Length = 594

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 178/611 (29%), Positives = 295/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  +L+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGVPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|228967613|ref|ZP_04128636.1| UvrABC system protein C [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792104|gb|EEM39683.1| UvrABC system protein C [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 594

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 178/611 (29%), Positives = 294/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  +L+ +L +   I +  + K  K             E +VL       Y +QR++DE 
Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVVLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|163942251|ref|YP_001647135.1| excinuclease ABC subunit C [Bacillus weihenstephanensis KBAB4]
 gi|229013719|ref|ZP_04170848.1| UvrABC system protein C [Bacillus mycoides DSM 2048]
 gi|229558014|sp|A9VJI0|UVRC_BACWK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|163864448|gb|ABY45507.1| excinuclease ABC, C subunit [Bacillus weihenstephanensis KBAB4]
 gi|228747641|gb|EEL97515.1| UvrABC system protein C [Bacillus mycoides DSM 2048]
          Length = 594

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 295/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTDEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEIRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFHLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      + +  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTVKAIDNLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 TSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIAEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAEMIYTYL 588


>gi|315634134|ref|ZP_07889423.1| excision endonuclease subunit UvrC [Aggregatibacter segnis ATCC
           33393]
 gi|315477384|gb|EFU68127.1| excision endonuclease subunit UvrC [Aggregatibacter segnis ATCC
           33393]
          Length = 610

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/617 (33%), Positives = 340/617 (55%), Gaps = 32/617 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D +  V+YVGKA +L+KR+ SY     ++ +   +++ I++I  T+T 
Sbjct: 12  NVPHLPGVYRMYDDSNTVIYVGKAKDLKKRLSSYFRKQLNSKKTEALVASIHHIETTITT 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +PR+N+LLRDDKS+PYIL+T K   P +  +R S  IQG YFGP
Sbjct: 72  SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-KETHPRITSYRGSKKIQGEYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RC  PC    ++ E Y + 
Sbjct: 131 YPNAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCLAPCVKGYVTDEAYAQQ 190

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           V+ A+ FL G +  + + + + M QA+ + ++E A   RD++ A+  +        +R D
Sbjct: 191 VNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARVRDQIQAVRAVIEKQFVANDRHD 250

Query: 244 C---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
                ++ +   +AC+Q  F   G+  G  ++F K  S +  A++   F+ QFY      
Sbjct: 251 DIDIIAIAYQLGVACVQVLFIRQGKILGNRSYFPKVPSNTNLAELTETFVGQFYLQAHQG 310

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  I++ ++ EE + LE     Q G KV I    +G+K K ++ A +NA  +   KL
Sbjct: 311 RTIPNTIIVDQKLEEKADLETLLSDQAGRKVIIQDHAKGDKSKYLQLAQMNAKAALVTKL 370

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                         +   +  I  R+E +D SH MG   +   VV  ++G +K+ YR+FN
Sbjct: 371 KQSTLQHDRYAALQELLGIDVIK-RMECFDISHTMGEQTIASCVVFNQDGPLKSDYRRFN 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M   L +R+ + ++ ++                PD++ +DGGKGQL
Sbjct: 430 I--SGITKGDDYAAMEQALLKRYDKDLEEDK---------------IPDIIFIDGGKGQL 472

Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQR 532
           + A  V + L V   +NR  +I +AKG  R AG+E   + K  + L L      L+ IQ 
Sbjct: 473 NRALQVFENLKVKWNKNRPHLIGVAKGVDRRAGLETLILSKWDKELHLPSDSLALHLIQH 532

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H  AI+ HRK+R++    S L+ I G+G  R++ LL+  G ++ +  ++ + +AS
Sbjct: 533 IRDESHNHAISGHRKKRQQHFTQSGLESIEGVGAKRRQALLKYLGGLQGVKNATLDEIAS 592

Query: 592 IEGISKKIACKIYNHFH 608
           + GISK +A KI+    
Sbjct: 593 VPGISKALAEKIFETLQ 609


>gi|29898156|gb|AAP11430.1| Excinuclease ABC subunit C [Bacillus cereus ATCC 14579]
          Length = 590

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 178/610 (29%), Positives = 294/610 (48%), Gaps = 43/610 (7%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT + 
Sbjct: 9   PDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSSN 67

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
           +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+ 
Sbjct: 68  LEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPYP 126

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V E
Sbjct: 127 NAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVDE 182

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
             KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     D
Sbjct: 183 IIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDRD 242

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F    +K   C+Q  F   G+             E     +         +    P+ I
Sbjct: 243 VFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKEI 302

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLSTE 359
           ++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           E
Sbjct: 303 VVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERDE 355

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                 +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ +  
Sbjct: 356 ERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIKT 414

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+AA
Sbjct: 415 --VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAAA 458

Query: 480 QGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
             +L+ +L +   I +  + K  K             E ++L       Y +QR++DE H
Sbjct: 459 SDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEVH 515

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ K
Sbjct: 516 RFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMPK 574

Query: 598 KIACKIYNHF 607
            +A  IY + 
Sbjct: 575 NVAETIYTYL 584


>gi|169829497|ref|YP_001699655.1| excinuclease ABC subunit C [Lysinibacillus sphaericus C3-41]
 gi|229558449|sp|B1HW86|UVRC_LYSSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|168993985|gb|ACA41525.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Lysinibacillus sphaericus C3-41]
          Length = 596

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 176/617 (28%), Positives = 285/617 (46%), Gaps = 39/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M D  G ++YVGKA  L+ R++SY     H  +   ++S+I +  + 
Sbjct: 8   KLDILPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGT-HEGKTQRLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EAL+LE N+IK   P++N++L DDK++PY+ IT+  K P L   R     +  Y
Sbjct: 67  VTSSNIEALILELNLIKLHDPKYNVMLTDDKTYPYLKITN-EKHPRLITTRKVKKDKAKY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +  A  +T   L R + LR       +  ++ CL + + +C  PC  EI    Y 
Sbjct: 126 FGPYPNAYAASETKKLLDRLYPLRK----CVQLPSKVCLYYHMGQCIAPCVKEIEGHVYQ 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238
           E + +  KFL+GG   +K+++   M  A    ++E A   RD++A +  +          
Sbjct: 182 EMIEDMTKFLNGGVEAVKKELEVKMLAAAENLEFERAKEFRDQIAHIDTVMQKQKIVSSD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F     K   C+Q  F   G+             +     +          +  
Sbjct: 242 TTNRDVFGYAVEKGWMCVQVFFVRQGKLIERDVSIFPIYQDPEEEFLTFVGRFYEKPEHI 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ + + +  +   L E+   K          PK+G+K+++++ A  NA  +   K   
Sbjct: 302 KPKEVFIPQAIDGAILTELLGIKVLT-------PKRGQKKELVDLATKNAEIAVAAKFQL 354

Query: 359 EISHQMIL---KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
               +       +          P RIE +DNSH+ G  AV  MVV  +    K +YRK+
Sbjct: 355 IERQEERTIGACEALGDAMGITTPLRIEAFDNSHMHGTDAVSAMVVFIDGKPAKKEYRKY 414

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
                     DD   M+ V+ RR+ +++K                   PD+V++DGGKGQ
Sbjct: 415 KTRTA--AKHDDYGAMQEVIRRRYIRVLKEG--------------LPLPDLVLIDGGKGQ 458

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           +  A+ VL+   +   I I  +AK  K +      F    E + L       Y +QR++D
Sbjct: 459 MEVAREVLED-ELGLVIPIAGLAKDDKHNTSQ-LLFGDPPEVIALKRTSDGFYLLQRIQD 516

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HRFAIT  R++ +K A  S LD+I G+GP RK+ LL+ FG+VK I  +S   L    G
Sbjct: 517 EVHRFAITFLRQQHEKHAIQSVLDQIEGVGPKRKQQLLKHFGSVKKIREASELALQEA-G 575

Query: 595 ISKKIACKIYNHFHKNT 611
           +   +A  IY +F + +
Sbjct: 576 MPANLASHIYAYFQQES 592


>gi|289422277|ref|ZP_06424131.1| excinuclease ABC, C subunit [Peptostreptococcus anaerobius 653-L]
 gi|289157328|gb|EFD05939.1| excinuclease ABC, C subunit [Peptostreptococcus anaerobius 653-L]
          Length = 607

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 194/623 (31%), Positives = 311/623 (49%), Gaps = 40/623 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ NH+ ++  M+  I++  + 
Sbjct: 8   LKKLPASPGVYLMKDRDNNIIYVGKAVSLKNRVRQYFQSSRNHSKKVVSMVKNIDSFEYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T +EVEAL+LE N+IK+ KP++NILL+DDK++PYI +T     P + K R     +  Y
Sbjct: 68  ITDSEVEALILECNLIKKYKPKYNILLKDDKTYPYIKVTVNEDFPRVLKVRKILKDKAKY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           FGP+ +V AV   ++ ++  + +R+C    D   R   RPCL + IK+C+GPCTG    E
Sbjct: 128 FGPYTNVSAVNDVLDLIRDIYPIRTCNIDIDRAIRTGMRPCLNYHIKKCTGPCTGYDIKE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y   + E   FL G    L       M +A +  D+E+A I+RD++ +L+ +       
Sbjct: 188 DYKRMIDEIIMFLQGKEEKLVTMFEDKMKKAAMDLDFENAAIYRDKINSLNEVAQKQKIS 247

Query: 239 Y----NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                N  D  ++ +    AC+Q  F   G+  G   F L    ++  ++IL  F++QFY
Sbjct: 248 KLQSDNDQDVIAMANFDQEACVQIFFIRNGKISGRERFMLDGIKDNDRSEILGSFVKQFY 307

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
             +   P+ +++ EE  +  ++      + G  V I VPK+GEKR ++     NA     
Sbjct: 308 MSQEYVPKELIVEEEIFDQEIIAQMLSSKRGSNVSIKVPKKGEKRALVLMVRKNADEYLV 367

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                K          L +      +     RIE YD S+I G  ++G MVV  +    K
Sbjct: 368 KFDDLKKKKYQKSLGALDELKAVLDIESDLHRIEAYDISNIQGVDSIGTMVVYTDGIKDK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            +YR+F +    V+  DD A M  VL+RR                         PD+++L
Sbjct: 428 KEYRRFKIKT--VEGPDDYASMAEVLDRRLKH-------------------GKLPDLILL 466

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+SA + VLK   +E  I +  + K  +         +   + + L+    +  F
Sbjct: 467 DGGKGQVSAVKRVLKDNGLE--IPLWGMYKDDRHRTKG---LINSDKTIELDRTSSLYRF 521

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +  +++E H ++I+ HR  R KK   S LD++ GIGP RK  L+  F  +  I  +S + 
Sbjct: 522 VYGIQEEVHGYSISYHRSLRDKKLTKSILDDVPGIGPKRKLALISKFKDIDKIRSASIDE 581

Query: 589 LASIEGISKKIACKIYNHFHKNT 611
           +  ++GISKKIA  I N   K  
Sbjct: 582 IMEVDGISKKIAEDIVNILEKGE 604


>gi|251792698|ref|YP_003007424.1| excinuclease ABC subunit C [Aggregatibacter aphrophilus NJ8700]
 gi|247534091|gb|ACS97337.1| excinuclease ABC, C subunit [Aggregatibacter aphrophilus NJ8700]
          Length = 612

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/617 (33%), Positives = 340/617 (55%), Gaps = 32/617 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D +  V+YVGKA +L+KR+ SY     ++ +   +++ I++I  T+T 
Sbjct: 14  NVPHLPGVYRMYDDSNTVIYVGKAKDLKKRLSSYFRKQLNSKKTEALVASIHHIETTITT 73

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +PR+N+LLRDDKS+PYIL+T K   P +  +R S  IQG YFGP
Sbjct: 74  SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-KETHPRITSYRGSKKIQGEYFGP 132

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RC  PC    ++ E Y + 
Sbjct: 133 YPNAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCLAPCVKGYVTDEAYAQQ 192

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           V+ A+ FL G +  + + + + M QA+ + ++E A   RD++ A+  +        +R D
Sbjct: 193 VNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARIRDQIQAVRAVIEKQFVANDRHD 252

Query: 244 C---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
                ++ +   +AC+Q  F   G+  G  ++F K  S +  A++   F+ QFY      
Sbjct: 253 DIDIIAIAYQLGVACVQVLFIRQGKILGNRSYFPKVPSNTNLAELTETFVGQFYLQAHQG 312

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  I++ ++ EE + LE     Q G KV I    +G+K K ++ A +NA  +   KL
Sbjct: 313 RTIPNTIIVDQKLEEKADLETLLSDQAGRKVIIQDHAKGDKSKYLQLAQMNAKAALVTKL 372

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                         +   +  I  R+E +D SH MG   +   VV  ++G +K+ YR+FN
Sbjct: 373 KQSTLQHDRYAALQELLGIDVIK-RMECFDISHTMGEQTIASCVVFSQDGPLKSDYRRFN 431

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M   L +R+ + ++ ++                PD++ +DGGKGQL
Sbjct: 432 I--SGITKGDDYAAMEQALLKRYDKDLEEDK---------------IPDIIFIDGGKGQL 474

Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQR 532
           + A  V + L V   +NR  +I +AKG  R AG+E   + K  + L L      L+ IQ 
Sbjct: 475 NRALQVFENLKVKWNKNRPHLIGVAKGVDRRAGLETLILSKWDKELHLPSDSLALHLIQH 534

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H  AI+ HRK+R++    S L+ I G+G  R++ LL+  G ++ +  ++ + +AS
Sbjct: 535 IRDESHNHAISGHRKKRQQHFTQSGLESIEGVGAKRRQALLKYLGGLQGVKNATLDEIAS 594

Query: 592 IEGISKKIACKIYNHFH 608
           + GISK +A KI+    
Sbjct: 595 VPGISKALAEKIFETLQ 611


>gi|228999295|ref|ZP_04158875.1| UvrABC system protein C [Bacillus mycoides Rock3-17]
 gi|229006850|ref|ZP_04164483.1| UvrABC system protein C [Bacillus mycoides Rock1-4]
 gi|228754472|gb|EEM03884.1| UvrABC system protein C [Bacillus mycoides Rock1-4]
 gi|228760492|gb|EEM09458.1| UvrABC system protein C [Bacillus mycoides Rock3-17]
          Length = 594

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 174/611 (28%), Positives = 296/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNIP----DKVCLYYHMGQCLAPCVQEVTDEQNQEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              KFL+GG+  ++ ++   M +A+ K ++E A   RD+++ +  I      I +     
Sbjct: 186 GIVKFLNGGHKEVRSELEAKMYEASEKLEFERAKELRDQISHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +          +   P+ 
Sbjct: 246 DVFGYVVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYEQNNHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V +T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDPELV-------ERFLEVDVTQPKRGKKKDLVELANKNAKIALGEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+  +     RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGKQLDIETP-YRIEAFDNSNIQGTNPVSAMIVFIDGKSAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++++DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIVIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDVLENELGLY--IPMAGLVKDDKHRTSH-LMIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD I G+G  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDGIPGVGEKRKKVLLKHFGSLKKMKEASVTEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           + +A  IY++ 
Sbjct: 578 QNVAETIYSYL 588


>gi|87124468|ref|ZP_01080317.1| excinuclease ABC, C subunit [Synechococcus sp. RS9917]
 gi|86168040|gb|EAQ69298.1| excinuclease ABC, C subunit [Synechococcus sp. RS9917]
          Length = 659

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 191/631 (30%), Positives = 301/631 (47%), Gaps = 29/631 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            +++P  PG Y M D   R+LYVGK+ +L+ R++SY  S +  + RI  M  Q+  I F 
Sbjct: 10  LKEIPAQPGCYLMRDQDDRILYVGKSKSLRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT +E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT     P L+  R         
Sbjct: 70  VTDSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSEPYPRLFITRRRRFRSPLD 129

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R F LR     ++  RT  CL   I RC G C  +ISSE+
Sbjct: 130 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLYPDRT--CLNHAIGRCPGVCQEKISSEE 187

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   + +      G +  L+  +   M +   + D+E+A   RD+L  L  +        
Sbjct: 188 YHRILRKVAMVFQGRSDELQTLLTEQMERYAERLDFEAAARIRDQLQGLDQLTADQKMSL 247

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  ++ +A +Q      G+  G   F     +      IL   + + Y+
Sbjct: 248 PDSSVSRDVLALACDQRVAAVQLFQMRAGKLVGRLGFTAD-AAGLEPGLILQRVIEEHYS 306

Query: 296 D---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+     +  LLE    +Q   +V+I  P++ +K  +IE    NA    
Sbjct: 307 QLDAVEIPPELLVQYPLPQRLLLEDWLGEQRERRVQIHCPQRRQKADLIELVQRNAEFEL 366

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +    +    +  +D  +   LP  P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 367 LRAQRGQEQQALATEDLAQLLELPRPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 426

Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNF--------HPKKQEYSFPS 462
           RK+ +  + V+     D   M  V+ RRF +  + +                 Q      
Sbjct: 427 RKYKIRSSSVRAGHSDDFMSMAEVIRRRFRRWARAKAEGADLGALRHRGGSALQTDGLND 486

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPDVV++DGGKGQLSA    L++L+++  +T+ S+AK  +     E F   + + L    
Sbjct: 487 WPDVVMIDGGKGQLSAVMEALRELDLDQDLTVCSLAKQRE-----EIFLPGERQPLESEP 541

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA++ HR++R  +   S L +I G+GP R R LL  F ++  I
Sbjct: 542 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGPKRVRDLLGHFHSIDAI 601

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             +  E LA+  GI + +A +I+  FH    
Sbjct: 602 QLAPIERLAAAPGIGRSLAEQIHAFFHPQDD 632


>gi|145588602|ref|YP_001155199.1| excinuclease ABC, C subunit [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047008|gb|ABP33635.1| Excinuclease ABC subunit C [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 620

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 215/636 (33%), Positives = 324/636 (50%), Gaps = 54/636 (8%)

Query: 10  PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69
           PGVY+  D AG +LYVGKA NL+KR+ SY      + RI  M+ +I     TVT TE EA
Sbjct: 2   PGVYRFFDEAGNILYVGKARNLKKRVSSYFQRTQLSPRIELMVGKIARYETTVTRTETEA 61

Query: 70  LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVD 129
           L+LE N+IK L P FNIL RDDKS+PY+++T  H+ P L  +R     +  YFGPF +  
Sbjct: 62  LILENNLIKELAPPFNILFRDDKSYPYVMLT-GHQFPRLASYRGKVDKRNHYFGPFPNSW 120

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
           AV  ++  LQ+ F LR+C DSVF++R+RPCLL QI RCS PC G +S E+Y + V +A +
Sbjct: 121 AVRNSVQILQKVFRLRTCEDSVFKNRSRPCLLHQIHRCSAPCVGRLSVEQYSQDVAQATR 180

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-----NRMDC 244
           FL G +  +  ++ + M+  +   ++E A I RDR+A LS +               +D 
Sbjct: 181 FLEGDHSRVLSELEKEMHVHSEAMEFEMAAILRDRIADLSSVLQQQAMDTVAEGEGDVDV 240

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLK-----TDSESTNAQILSYFLRQFYTD--- 296
            ++   + + C+       G++ G   +F K     +    +  +IL  F+ Q Y D   
Sbjct: 241 IAVALMEGMVCVNLAMVRGGRHLGDRAYFPKGLRSSSGELPSPTEILEAFIAQHYLDETA 300

Query: 297 -------KPCPENILLSEEA-----EETSLLEISFFKQYG-------YKVKITVPKQGEK 337
                     P  I+++        E T+L E      +         K+      QG++
Sbjct: 301 GEEVSVTNLIPPVIVMNHALQAAGDEITTLSESPPEDLHDLLNAQAGRKITFLHQPQGQR 360

Query: 338 RKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALP---HIPKRIEIYDNSHIMGCS 394
           R  +  A  NA  + T++L          +      +L        RIE +D SH  G +
Sbjct: 361 RHWLAMAEGNAKIALTKRLVETGGQLARARALVDILSLDLEGLEHLRIECFDISHTSGEA 420

Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK 454
                VV  +N    ++YR+FN++   +   DD A MR VL+RR++   +          
Sbjct: 421 TQASCVVYAKNAMQSSEYRRFNIND--ITPGDDYAAMRQVLQRRYANFQE---------- 468

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
                    P V+++DGGKGQ+  A+ VL +  ++  + I+ +AKG  R  G+E      
Sbjct: 469 ---LPPEKMPQVILVDGGKGQVEMARQVLTEFGMDVSL-IVGVAKGEGRKVGLETLIFAD 524

Query: 515 G-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLL 572
           G E L L +    L  + ++RDEAHRFAIT  R +R KA   S L+EI GIG  R++ LL
Sbjct: 525 GREPLELGIDSAALLLVAQIRDEAHRFAITGMRAKRAKARTVSRLEEIEGIGAKRRQKLL 584

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             FG +K ++ +S E +AS+EG+S  +A +IY   H
Sbjct: 585 ARFGGLKGVANASIEEIASVEGVSLTLAEQIYRQLH 620


>gi|296393040|ref|YP_003657924.1| excinuclease ABC subunit C [Segniliparus rotundus DSM 44985]
 gi|296180187|gb|ADG97093.1| excinuclease ABC, C subunit [Segniliparus rotundus DSM 44985]
          Length = 650

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 187/651 (28%), Positives = 307/651 (47%), Gaps = 71/651 (10%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY+  D +G+V+YVGKA NL+ R+ +Y         R   M++  + + +TV  
Sbjct: 10  IPTEPGVYRFRDPSGQVIYVGKAKNLRARLSNYFQDLYALAPRTRLMVTTASAVEWTVVA 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TEVEAL LE + IK   PRFN+  RDDKS+P + ++   + P L+ +R +      YFGP
Sbjct: 70  TEVEALQLEFSWIKEFDPRFNVRYRDDKSYPMLAVSLNEEYPRLFVYRGARRKGVRYFGP 129

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYM 181
           ++ V A+  T++ L + F  R+C++ VF+      RPCLL  I +CS PC G +S+ ++ 
Sbjct: 130 YSHVWAIRNTVDLLTKVFPARTCSNGVFKRHGQIGRPCLLGYIDKCSAPCVGAVSAAEHR 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             V    +FL+GG  NL  +  + M  A    D+E+A   RD LAAL     H   +   
Sbjct: 190 RIVQSFCEFLAGGADNLVRETRKRMLAAAEALDFEAAARLRDELAALDKALEHQTVVLAD 249

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD----------------SESTN 282
            +  D  +  +++    +Q      G+ RG   + +                     ++ 
Sbjct: 250 GSDADVVAFDYDELEVAVQVFQVREGRVRGQRGWVVDNAYSPGPHGDRTRDGRGWEAASR 309

Query: 283 AQILSYFLRQFYTD-----------------KPCPENILLSEEAEETSLLEISFFKQYGY 325
            +++  FL QFY D                    P+ +L+ E  ++            G 
Sbjct: 310 REMVEEFLLQFYGDLAELESVADRFGQSDRMSAVPKEVLVPELPDDVEGFATWLSTLRGT 369

Query: 326 KVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKR 381
            V + VP++G+KRK++E    NAH +  Q               L++  + F LP  P R
Sbjct: 370 PVALRVPRRGDKRKLMETVARNAHETLAQHKLRRSGDFTERSAALQEIYEAFDLPAPPIR 429

Query: 382 IEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP----NDVKTQDDCAMMRMVLER 437
           IE  D SH+ G   V  +VV  +    K  YR + +      +     DD   +  V+ R
Sbjct: 430 IECVDVSHVQGTDVVASLVVFDDGLPKKADYRHYTIKGAMGADGAPQNDDTRSVAEVIAR 489

Query: 438 RFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI 497
           RF++                      P ++++DGG+ Q+ AA   L +L   + I ++ +
Sbjct: 490 RFAK----------------RGDRPDPGLLVIDGGQPQVRAAHKALVELGAAD-IPVVGL 532

Query: 498 AKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSP 556
           AK  +     E +     + ++L  R P L+ +QR+RDEAHRFAI  HRK+R K    S 
Sbjct: 533 AKRLE-----ELWLPDDDDPVILPRRSPGLFLLQRVRDEAHRFAIAHHRKKRSKRMTVSA 587

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           LDE+ G+G  R+  L++ FG+V+ ++ +S + +A++ G    +A  +    
Sbjct: 588 LDEVKGLGERRRAQLVKHFGSVRKLADASADEIAALPGFGPVLAESVVTAL 638


>gi|228910343|ref|ZP_04074159.1| UvrABC system protein C [Bacillus thuringiensis IBL 200]
 gi|228849295|gb|EEM94133.1| UvrABC system protein C [Bacillus thuringiensis IBL 200]
          Length = 594

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEIRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A  +L+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 ASDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|148643755|ref|YP_001274268.1| excinuclease ABC subunit C [Methanobrevibacter smithii ATCC 35061]
 gi|148552772|gb|ABQ87900.1| excinuclease ABC, subunit C, UvrC [Methanobrevibacter smithii ATCC
           35061]
          Length = 583

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 198/612 (32%), Positives = 320/612 (52%), Gaps = 42/612 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E +P+ PGVY M D    ++Y+GKA NL  R++SY        +   ++S  +++ + V
Sbjct: 8   PENLPKKPGVYIMRDANDEIIYIGKAKNLINRVRSYFREKLDRPKTQILMSHFDSLEYIV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LEA +IK+ +PR+N+ L+DDK +PY+ IT+  K P L   R+ +     Y+
Sbjct: 68  TNSEKEALILEATLIKKHRPRYNVQLKDDKRYPYVKITN-EKYPRLIITRNITKNG-IYY 125

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF  V +V+KT+  L+  F +R+      R+   PCL  QI  C  PC+GEIS E+Y E
Sbjct: 126 GPFTDVTSVKKTVKFLKSLFKIRT-----CRNMDGPCLNSQIDLCYAPCSGEISKEEYDE 180

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN----DSI 238
            +++   F  G    + + + + M +A   E +E A + RD++ ++  I           
Sbjct: 181 IINKIDLFFQGKYSVIVKNLKKEMAEAAENEQFEKAAVLRDQITSIEEIMEKQFVDLVDD 240

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DK 297
               D  ++  N N   +       G+  G   F +      +N++IL  F++Q+Y  ++
Sbjct: 241 DLDQDVIAIAPNDNEVVVIIMPIRNGKIVGRDDFLMSGSQYESNSEILFAFIQQYYGFNR 300

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ ILL+E  ++T LLE       G KV I VP +G K +++  A  NA         
Sbjct: 301 HIPKQILLNEPIDDTELLEEWLSDLRGNKVYIKVPMKGVKLRLVNMAQKNAEI----IKH 356

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + + +  L +  K   L  +P+ IE YD S+I G  AVG  V   +    K +Y++F +
Sbjct: 357 QKKAMENSLIELKKYLKLDKLPRIIEGYDISNISGKFAVGSKVSFKDAKPNKKKYKRFKI 416

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   +D AMM+ +L RR   +  +EE                PD++++DGGKGQL 
Sbjct: 417 ET---PGPNDFAMMKELLTRRLKMIDTDEE----------------PDLIVIDGGKGQLG 457

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            A  VL +LN+   I II +AK  +     E +       +++   +  L+ +Q++RDE+
Sbjct: 458 TACEVLDELNLA-HIPIIGLAKEFE-----EIYIPNSKRPIIIPKNNKALHLLQQVRDES 511

Query: 538 HRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HRK R    + S LD+I GIG  RK  +L+ FGT+  +  +S E LA I+G++
Sbjct: 512 HRFAITYHRKLRSDNISESSLDDIPGIGKKRKINILKEFGTMDKVKNASVEELAKIKGMN 571

Query: 597 KKIACKIYNHFH 608
           +K+A  +Y ++H
Sbjct: 572 EKVATNVYEYYH 583


>gi|222444815|ref|ZP_03607330.1| hypothetical protein METSMIALI_00428 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434380|gb|EEE41545.1| hypothetical protein METSMIALI_00428 [Methanobrevibacter smithii
           DSM 2375]
          Length = 583

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 198/612 (32%), Positives = 320/612 (52%), Gaps = 42/612 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E +P+ PGVY M D    ++Y+GKA NL  R++SY        +   ++S  +++ + V
Sbjct: 8   PENLPKKPGVYIMRDANDEIIYIGKAKNLINRVRSYFREKLDRPKTQILMSHFDSLEYIV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LEA +IK+ +PR+N+ L+DDK +PY+ IT+  K P L   R+ +     Y+
Sbjct: 68  TNSEKEALILEATLIKKHRPRYNVQLKDDKRYPYVKITN-EKYPRLIITRNITKNG-IYY 125

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF  V +V+KT+  L+  F +R+      R+   PCL  QI  C  PC+GEIS E+Y E
Sbjct: 126 GPFTDVTSVKKTVKFLKSLFKIRT-----CRNMDGPCLNSQIDLCYAPCSGEISKEEYDE 180

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN----DSI 238
            +++   F  G    + + + + M +A   E +E A + RD++ ++  I           
Sbjct: 181 IINKIDLFFQGKYSVIVKNLKKEMAEAAENEQFEKAAVLRDQITSIEEIMEKQFVDLVDD 240

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DK 297
               D  ++  N N   +       G+  G   F +      +N++IL  F++Q+Y  ++
Sbjct: 241 DLDQDVIAIAPNDNEVVVIIMPIRNGKIVGRDDFLMSGSQYESNSEILFAFIQQYYGFNR 300

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ ILL+E  ++T LLE       G KV I VP +G K +++  A  NA         
Sbjct: 301 HIPKQILLNEPIDDTELLEEWLSDLRGNKVYIKVPMKGVKLRLVNMAQKNAEI----IKH 356

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + + +  L +  K   L  +P+ IE YD S+I G  AVG  V   +    K +Y++F +
Sbjct: 357 QKKAMENSLIELKKYLKLDKLPRIIEGYDISNISGKFAVGSKVSFKDAKPNKKKYKRFKI 416

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   +D AMM+ +L RR   +  +EE                PD++++DGGKGQL 
Sbjct: 417 ET---PGPNDFAMMKELLTRRLKMVDTDEE----------------PDLIVIDGGKGQLG 457

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            A  VL +LN+   I II +AK  +     E +       +++   +  L+ +Q++RDE+
Sbjct: 458 MACEVLDELNLA-HIPIIGLAKEFE-----EIYIPNSKRPIIIPKNNKALHLLQQVRDES 511

Query: 538 HRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HRK R    + S LD+I GIG  RK  +L+ FGT+  +  +S E LA I+G++
Sbjct: 512 HRFAITYHRKLRSDNISESSLDDIPGIGKKRKINILKEFGTMDKVKNASVEELAKIKGMN 571

Query: 597 KKIACKIYNHFH 608
           +K+A  +Y ++H
Sbjct: 572 EKVATNVYEYYH 583


>gi|229118005|ref|ZP_04247365.1| UvrABC system protein C [Bacillus cereus Rock1-3]
 gi|228665454|gb|EEL20936.1| UvrABC system protein C [Bacillus cereus Rock1-3]
          Length = 594

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 176/611 (28%), Positives = 293/611 (47%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEIRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDQLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                    D++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLTDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 VSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVILERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASVAEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAETIYTYL 588


>gi|261350613|ref|ZP_05976030.1| excinuclease ABC subunit C [Methanobrevibacter smithii DSM 2374]
 gi|288861396|gb|EFC93694.1| excinuclease ABC subunit C [Methanobrevibacter smithii DSM 2374]
          Length = 583

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 198/612 (32%), Positives = 320/612 (52%), Gaps = 42/612 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E +P+ PGVY M D    ++Y+GKA NL  R++SY        +   ++S  +++ + V
Sbjct: 8   PENLPKKPGVYIMRDANDEIIYIGKAKNLINRVRSYFREKLDRPKTQILMSHFDSLEYIV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LEA +IK+ +PR+N+ L+DDK +PY+ IT+  K P L   R+ +     Y+
Sbjct: 68  TNSEKEALILEATLIKKHRPRYNVQLKDDKRYPYVKITN-EKYPRLIITRNITKNG-IYY 125

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF  V +V+KT+  L+  F +R+      R+   PCL  QI  C  PC+GEIS E+Y E
Sbjct: 126 GPFTDVTSVKKTVKFLKSLFKIRT-----CRNMDGPCLNSQIDLCYAPCSGEISKEEYDE 180

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN----DSI 238
            +++   F  G    + + + + M +A   E +E A + RD++ ++  I           
Sbjct: 181 IINKIDLFFQGKYSVIVKNLKKEMAEAAENEQFEKAAVLRDQITSIEEIMEKQFVDLVDD 240

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DK 297
               D  ++  N N   +       G+  G   F +      +N++IL  F++Q+Y  ++
Sbjct: 241 DLDQDVIAIAPNDNEVVVIIMPIRNGKIVGRDDFLMSGSQYESNSEILFAFIQQYYGFNR 300

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ ILL+E  ++T LLE       G KV I VP +G K +++  A  NA         
Sbjct: 301 HIPKQILLNEPIDDTELLEEWLSDLRGNKVYIKVPMKGVKLRLVNMAQKNAEI----IKH 356

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + + +  L +  K   L  +P+ IE YD S+I G  AVG  V   +    K +Y++F +
Sbjct: 357 QKKAMENSLIELKKYLKLDKLPRIIEGYDISNISGKFAVGSKVSFKDAKPNKKKYKRFKI 416

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   +D AMM+ +L RR   +  +EE                PD++++DGGKGQL 
Sbjct: 417 ET---PGPNDFAMMKELLTRRLKMIDTDEE----------------PDLIVIDGGKGQLG 457

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            A  VL +LN+   I II +AK  +     E +       +++   +  L+ +Q++RDE+
Sbjct: 458 MACEVLDELNLA-HIPIIGLAKEFE-----EIYIPNSKRPIIIPKNNKALHLLQQVRDES 511

Query: 538 HRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HRK R    + S LD+I GIG  RK  +L+ FGT+  +  +S E LA I+G++
Sbjct: 512 HRFAITYHRKLRSDNISESSLDDIPGIGKKRKINILKEFGTMDKVKNASVEELAKIKGMN 571

Query: 597 KKIACKIYNHFH 608
           +K+A  +Y ++H
Sbjct: 572 EKVATNVYEYYH 583


>gi|268316813|ref|YP_003290532.1| excinuclease ABC, C subunit [Rhodothermus marinus DSM 4252]
 gi|262334347|gb|ACY48144.1| excinuclease ABC, C subunit [Rhodothermus marinus DSM 4252]
          Length = 615

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 187/627 (29%), Positives = 301/627 (48%), Gaps = 39/627 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
            +P  PGVY   D AG+VLYVGKA NL++R++SY   +     R+  ++ +I ++   VT
Sbjct: 11  HLPTRPGVYIHRDAAGQVLYVGKAKNLRQRVRSYFQESRPRDGRLEALVRKIADVEVIVT 70

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EAL+LE N+IK+LKPR+NI LRDDK++PYI I +  + P ++  R        YFG
Sbjct: 71  DTEAEALILENNLIKQLKPRYNINLRDDKTYPYICIAN-ERFPRVFPTRRVRKDGSKYFG 129

Query: 124 PFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+  V  + + +  ++     RT  L    +++   + +PCL + IK+C+ PC G  S E
Sbjct: 130 PYTDVGQMHRLLRLIRSLFKLRTCNLNLSPEAIAAGKYQPCLEYHIKKCAAPCIGLQSEE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y   + + ++ L+G    L  ++   M       D+E A   RD++  L         +
Sbjct: 190 DYNATIRQIEQLLNGKTQTLIAQLREEMKARAAALDFERAAELRDQIRLLEQHAERQKIV 249

Query: 239 YNRM-----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
                       ++     +AC        G+  G    +L+      +  +L  F+  +
Sbjct: 250 SQDFADRDVFALAVDRTDGVACGVVFQVREGKVIGRRHRYLRRIEGQRDGALLQAFVEDY 309

Query: 294 YTDK-PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
           Y +    P+ +LLS E EE   LE    ++ G KV + VP++G+K  ++  A  NA    
Sbjct: 310 YAEAVFFPDEVLLSHELEEPDALEALLRERRGKKVPLRVPQRGDKAGLVHLAEANARLLL 369

Query: 353 TQK-----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
            +         E      ++   +   LP +P+RIE +D SH+ G   V   VV  +   
Sbjct: 370 EEWRLAQKKRGETRIPEAVRALQEALRLPGLPRRIECFDISHLGGTGTVASCVVFEDGRP 429

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K  YR F +        DD   MR  + RR+ +L                    WPD+V
Sbjct: 430 SKRDYRTFKIRSVTPGKPDDYQAMREAVTRRYRRLRDEG--------------GPWPDLV 475

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           ++DGGKGQLS+A   L+ L +  +  +I +AK  +     E +     +   L    P L
Sbjct: 476 VIDGGKGQLSSALEALEALELRGQFPVIGLAKRLE-----EIYRPGDPDPYQLPKTSPAL 530

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
             +QR+R+EAHRFA+T  R++R++   S L +I GIGP     LLQ FG+ + +  +  E
Sbjct: 531 QLLQRIRNEAHRFAVTMQRRQRRRVLRSELLDIPGIGPRTVEKLLQHFGSARRVREADLE 590

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHT 614
            LA++ G  +  A +I  HF   ++ +
Sbjct: 591 ALAAVVG--RARAERIRQHFDAASTSS 615


>gi|118595104|ref|ZP_01552451.1| excinuclease ABC, C subunit [Methylophilales bacterium HTCC2181]
 gi|118440882|gb|EAV47509.1| excinuclease ABC, C subunit [Methylophilales bacterium HTCC2181]
          Length = 580

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 205/599 (34%), Positives = 317/599 (52%), Gaps = 24/599 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           ML+ A  ++Y+GKA +L+KR+ SY +    + R   M+  I +I FTVT TE EAL+LE 
Sbjct: 1   MLNKAEDIIYIGKAKDLKKRVLSYFNKTQPSPRTRLMVGSIASIEFTVTNTEAEALILEN 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           NMI+   PR+N++ RDDKS+PY+ IT   K P +  HR    I   YFGPF + +AV ++
Sbjct: 61  NMIRSFMPRYNVIFRDDKSYPYLAIT-GDKFPRIRFHRGLQKIDTKYFGPFPNSNAVRQS 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           I  LQ+ F LR+C +SVF +R+RPCL  QIKRC+ PC G I  ++Y   V++A  FL G 
Sbjct: 120 IQLLQKVFMLRTCENSVFNNRSRPCLEHQIKRCTAPCVGLIEEDEYGADVNQANLFLDGK 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNK 251
           +  +   + + MN+ +   ++E A I RDR+ +L  ++          N  D  +     
Sbjct: 180 DSEVIGNLTKKMNEQSEAFNFERAAIFRDRIQSLRQVRLKQFVSDFSENDADIIAFAEAS 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
              C        G++ G  TFF K         I+  F+ Q+Y     P  I+   +   
Sbjct: 240 GKICANVVMIRGGRHLGDKTFFPKNHDGHIEESIIDTFITQYYDLHKPPPVIVTENKVSN 299

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
             L++  F  +   KV++     G+K+  +  A  NA  S  QK + + S    L     
Sbjct: 300 -ELVKEFFAIKQYGKVRLLSRLTGDKKNWLLMAKKNAQISLEQKNNEQASQVERLLALRA 358

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
              LP    RIE YD SH MG S VG  VV  +       YRK+N+   ++   DD   M
Sbjct: 359 LLGLPDHVNRIECYDISHTMGESTVGSCVVYDKYEMQNKDYRKYNIK--NITPGDDYGAM 416

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           + VLERRF ++ + +                 PD+V++DGGKGQ   A+ +++   + + 
Sbjct: 417 KQVLERRFKRMAEED--------------AIKPDLVLIDGGKGQFGVAKKIMEDNGITD- 461

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEAL-VLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550
           I ++ ++KG  R AG EK  + + + L  +N  D   + IQ +RDE+HRFAIT HR +R 
Sbjct: 462 IYLVGVSKGADRKAGKEKLIIGEDKVLDTVNPEDLGFHLIQHIRDESHRFAITGHRAKRA 521

Query: 551 KA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           K    S ++E+ G+G  +++ LL  FG ++ +  +  E L  +EGI+ ++A KI+++FH
Sbjct: 522 KNRMSSSIEEVEGVGAKKRKSLLVYFGGLEGVKNAPVEELMLVEGINARLAEKIFSYFH 580


>gi|161511200|ref|NP_834229.2| excinuclease ABC subunit C [Bacillus cereus ATCC 14579]
 gi|119370540|sp|Q817L9|UVRC_BACCR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 594

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 178/610 (29%), Positives = 294/610 (48%), Gaps = 43/610 (7%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT + 
Sbjct: 13  PDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSSN 71

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
           +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+ 
Sbjct: 72  LEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPYP 130

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           +  +  +T   L R + LR C +       + CL + + +C  PC  E++ E+  E V E
Sbjct: 131 NAQSAHETKKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVDE 186

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMD 243
             KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     D
Sbjct: 187 IIKFLNGGHKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDRD 246

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            F    +K   C+Q  F   G+             E     +         +    P+ I
Sbjct: 247 VFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKEI 306

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLSTE 359
           ++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           E
Sbjct: 307 VVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERDE 359

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                 +    K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ +  
Sbjct: 360 ERTIKAVDHLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIKT 418

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+AA
Sbjct: 419 --VQGPDDYESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAAA 462

Query: 480 QGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
             +L+ +L +   I +  + K  K             E ++L       Y +QR++DE H
Sbjct: 463 SDILENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEVH 519

Query: 539 RFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ K
Sbjct: 520 RFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMPK 578

Query: 598 KIACKIYNHF 607
            +A  IY + 
Sbjct: 579 NVAETIYTYL 588


>gi|189423649|ref|YP_001950826.1| excinuclease ABC subunit C [Geobacter lovleyi SZ]
 gi|238692105|sp|B3E394|UVRC_GEOLS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189419908|gb|ACD94306.1| excinuclease ABC, C subunit [Geobacter lovleyi SZ]
          Length = 604

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 195/614 (31%), Positives = 304/614 (49%), Gaps = 31/614 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
             P  PGVY M D  G +LYVGKA NL++R+ +Y  + +   ++  +++++ +I FT+T 
Sbjct: 9   SFPTAPGVYLMRDATGTILYVGKARNLRQRVSNYFGATDGRPQVRFLMARVTSIEFTITD 68

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE  +IK+ +PR+N+ L+DDK+F  + I    + P     R  S     YFGP
Sbjct: 69  TEKEALLLENTLIKQHQPRYNLNLKDDKTFFSLRIDLTERFPRFTVVRKVSRDGARYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +AS  A  + +  LQR F LR        +R+RPCL  QI +CS PC   I++E+Y   V
Sbjct: 129 YASASAAREVLRQLQRMFPLRHYPLKTCLNRSRPCLYHQIGQCSAPCHNLITAEEYNLLV 188

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD--RLAALSHIQNHNDSIYNRM 242
             A  FL G N +L     + M +A     YE A   RD  +    +       S     
Sbjct: 189 EGAVLFLEGKNKDLVSGFRQRMKEAAEGLHYEEAARWRDLLKAIDTTLEHQKMVSQGGDS 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPE 301
           D   L  N++   I   F   G    + +  L        +  L+ F++ +Y + +  P+
Sbjct: 249 DILGLAGNEDSLAIAVLFVRGGSL--SGSTVLHGSGGLDTSDTLATFIQYYYGNERFIPD 306

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +LL    +    LE    +  G KV++  PK+G+K  ++  A  NA  +  +K +T   
Sbjct: 307 ELLLPLSLDAGQSLEEWLSELKGKKVRLQQPKRGDKLNLVNLATRNAQAALAEKSATRQG 366

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            +  L +  +K ALP +P+RIE YD S + G  +VG  V   +    K +YR       +
Sbjct: 367 IERTLAELQQKLALPRLPRRIECYDISTLQGRHSVGSGVAFLDGLPDKERYR--RYRIRE 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
            + QDD  M++ V  RRFS               +       PD+V++DGG GQL++   
Sbjct: 425 SQGQDDFGMLQEVFARRFS--------------PERIEQWGLPDLVVVDGGIGQLNSTLS 470

Query: 482 VLKKLNVENRITIISIA----KGPKRSAGMEK-----FFVKKGEALVLNMRDPILYFIQR 532
           VL +L +  R  ++S+A    KG  +   +E+     F   +   + L      L  +  
Sbjct: 471 VLAELGLSERPAVVSLAKSRVKGDGKDIHVERTEERVFLPGRRNPVRLRQDSAPLKLLAA 530

Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDEAHRFAI  HR+ R +    S L EI G+GP  +RLLL  FG+++ I  ++ E LA+
Sbjct: 531 IRDEAHRFAIGYHRRLRDRETLRSALREIPGVGPKLERLLLTRFGSLEGIQNATVEELAT 590

Query: 592 IEGISKKIACKIYN 605
           + G+S+++A  I  
Sbjct: 591 VAGVSQELARLIKA 604


>gi|310829183|ref|YP_003961540.1| excinuclease ABC subunit C [Eubacterium limosum KIST612]
 gi|308740917|gb|ADO38577.1| excinuclease ABC subunit C [Eubacterium limosum KIST612]
          Length = 632

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 195/627 (31%), Positives = 320/627 (51%), Gaps = 23/627 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M + AG ++YVGKA NL+ R++ Y   S N T +   ++S I +I  
Sbjct: 6   KLKDIPQNPGVYLMKNAAGDIIYVGKAINLRNRLRQYFQNSKNLTPKTVTLVSHICDIET 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +E+EAL+LE N+IK  +P++NILL+DDKS+PY+ +T + + P +   R+     G 
Sbjct: 66  IVVDSELEALILECNLIKEHRPKYNILLKDDKSYPYVKVTLEDEYPKVIMTREHKKDGGK 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS--VFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGPF S  AV+KTI ++ + + LR C           RPCL + I +C  PC G +  E
Sbjct: 126 YFGPFTSSFAVKKTIEAIGKLYPLRRCNRKVAFGEKNGRPCLNYYIGQCCAPCQGNVPKE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +YM ++ +    L+G +  L   +   M++A  K DYE A   RD++  + HI      I
Sbjct: 186 EYMAYISDILSILNGKDKELVLTLEEKMSEAAQKMDYELAAKLRDQIYGIQHIVEKQKII 245

Query: 239 YNR---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            +     D  +   +++LAC+Q      G+  G    FL+   EST   I++ F++Q+Y+
Sbjct: 246 VSNQQDQDIIAFAKDEDLACVQVFNVRDGKMLGRDHTFLEGVEESTPEDIMTTFVKQYYS 305

Query: 296 DKPCPENILLSEEA---EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA---- 348
            KP     ++       +E   +     +  G KV +T P++G+K K+      NA    
Sbjct: 306 SKPFIPREIILGAPLLKDEEDTIAQWLAELRGAKVVLTRPQKGQKSKMTRMVEENAELTL 365

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
            +   +K   E   +  L  F     + H P++IE YD S+I G   VG MVV       
Sbjct: 366 KQYELEKRQKEEKKKSRLDAFKDLLRMDHTPEKIEAYDISNISGTDNVGGMVVFQGGKPD 425

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YR+F +    V  Q+D A M+ ++ RR  + IK +   N     ++ SF  +PDV  
Sbjct: 426 KKAYRRFKIKS--VDGQNDYASMQEMIFRRIERGIKEQ---NEGKDPEKSSFLPFPDVFC 480

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGK  + A + +L+       I +  + K            + K E   L    P+  
Sbjct: 481 IDGGKTHVDAVRSILQMYP-NVHIEVCGMVKDDHHRIRG---IIYKDEEYPLKKSTPLCT 536

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           F+  + +E HR+A+  H+  RKK    S L+EI GIG  R+ LL++ +G++  + +++ E
Sbjct: 537 FLSDISEEVHRYALGYHQTLRKKGMLESRLEEIPGIGKKRRELLMRHYGSLNNLKKTTLE 596

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHT 614
            L ++ G+S K A  ++++F+ +   T
Sbjct: 597 ELKTLPGMSDKTAQAVFDYFNDDEHKT 623


>gi|299535528|ref|ZP_07048849.1| excinuclease ABC subunit C [Lysinibacillus fusiformis ZC1]
 gi|298728728|gb|EFI69282.1| excinuclease ABC subunit C [Lysinibacillus fusiformis ZC1]
          Length = 596

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 176/617 (28%), Positives = 289/617 (46%), Gaps = 39/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M D  G ++YVGKA  L+ R++SY     H  +   ++ +I +  + 
Sbjct: 8   KLDILPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGT-HEGKTQRLVGEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EAL+LE N+IK   P++N++L DDK++PY+ IT+  K P L   R     +  Y
Sbjct: 67  VTSSNIEALILELNLIKLHDPKYNVMLTDDKTYPYLKITN-EKHPRLITTRKVKKDKAKY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +  A  +T   L R + LR       +  ++ CL + + +C  PC  EI  + Y 
Sbjct: 126 FGPYPNAYAASETKKLLDRLYPLRK----CVQLPSKACLYYHMGQCLAPCVKEIDGQVYQ 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238
           E + +  KFL+GG   +K+++   M  A    ++E A   RD++A +  +          
Sbjct: 182 EMIEDMTKFLNGGVETVKKELEVKMLAAAENLEFERAKEFRDQIAHIDTVMQKQKIVSSD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F     K   C+Q  F   G+             ++    +          +  
Sbjct: 242 TTNRDVFGYAVEKGWMCVQVFFVRQGKLIERDVSIFPIYQDAEEEFLTFVGRFYEKPEHI 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I + +  +   L E+   K          PK+G+K++++E A  NA  +   K   
Sbjct: 302 KPKEIFIPQAIDAAILTELLEIKVLT-------PKRGQKKELVELATKNAEIAVAAKFQL 354

Query: 359 EISHQMIL---KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
               +       +   +      P RIE +DNSH+ G  AV  MVV  +    K +YRK+
Sbjct: 355 IERQEERTIGACEALGEAMGISAPLRIEAFDNSHMHGTDAVSAMVVFIDGKPAKKEYRKY 414

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
                     DD   M+ V+ RR+ +++K                   PD+V++DGGKGQ
Sbjct: 415 KTRTA--AKHDDYGAMQEVIRRRYIRVLKEG--------------LPLPDLVLIDGGKGQ 458

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           +  A+ VL+   +   I I  +AK  K +      F    E + L       Y +QR++D
Sbjct: 459 MEVAREVLED-ELGLVIPIAGLAKDDKHNTSQ-LLFGDPPEVISLKRTSDGFYLLQRIQD 516

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HRFAIT  R++ +K A  S LD+I G+GP RK+ LL+ FG+VK I  +S   L    G
Sbjct: 517 EVHRFAITFLRQQHEKHAIQSVLDQIEGVGPKRKQQLLKHFGSVKKIREASELALQEA-G 575

Query: 595 ISKKIACKIYNHFHKNT 611
           +   +A +I+++F + +
Sbjct: 576 MPANLASQIFSYFQQQS 592


>gi|229062202|ref|ZP_04199525.1| UvrABC system protein C [Bacillus cereus AH603]
 gi|228717096|gb|EEL68774.1| UvrABC system protein C [Bacillus cereus AH603]
          Length = 594

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTDEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEIRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFHLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      + +  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDNLGKQLGIETP-YRIEAFDNSNIQGINPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L +   I +  + K  K             E + L       Y +QR++DE 
Sbjct: 462 TSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVRLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIAEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAEMIYTYL 588


>gi|313905376|ref|ZP_07838742.1| excinuclease ABC, C subunit [Eubacterium cellulosolvens 6]
 gi|313469846|gb|EFR65182.1| excinuclease ABC, C subunit [Eubacterium cellulosolvens 6]
          Length = 619

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 188/630 (29%), Positives = 307/630 (48%), Gaps = 34/630 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +++P+ PGVY M  +   V+YVGKA  L+ R++ Y  +S N   +I  M+ Q+    +
Sbjct: 8   ELKKLPQKPGVYIMHGLKDEVMYVGKAVRLRNRVRQYFSNSKNKRLKIYSMVPQVTRFEY 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +EVEAL+LE N+IK  +P++N +L DDKS+P+I +T +   P +         +  
Sbjct: 68  IVTDSEVEALVLECNLIKEYRPKYNTMLMDDKSYPFIQVTTQEAFPRVNYQHRMKKDKAQ 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    A ++TI  +++ + LRSC   +     + RPCL + I +C  PC G IS E
Sbjct: 128 YFGPYPDATAAKETIELVRKLYHLRSCTRRLPEDIGKDRPCLYYHIHQCKAPCQGWISQE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   + EA +FL+G    +   +   M +A+ +  +E A   RD + ++  +       
Sbjct: 188 EYRSQIDEAIRFLNGKTEKVLRDLEEKMLEASEELKFEEAAAFRDLIRSVKKVSERQKMA 247

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               N  D  +L  +   A +Q  F   G+  G   F+LK   +   + ++  F++QFY+
Sbjct: 248 NGSGNDQDILALAEDGGDAIVQVFFVRDGRLIGRDHFYLKVGDDEDRSSVMQSFIQQFYS 307

Query: 296 DKP-CPENILLSEEAEETSLLEISFFK---QYGYKVKITVPKQGEKRKIIEQALINAH-- 349
             P  P  ++LS+   +T +LE    +       KV I VP++G K K++E A  NA   
Sbjct: 308 GTPFIPHELMLSDPIRDTDVLEAWLTEKKNDKNSKVHIRVPQRGSKEKLVELARRNASII 367

Query: 350 --RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
             +   +           + +  +   +     RIE YD S+I G  +VG MVV      
Sbjct: 368 LTQDRERIKKDVAKTVGAIGEIGEWLGMEAPG-RIESYDISNISGYQSVGSMVVYEGGRP 426

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K  YRKF +    V+  +D A M  VL RRF + +K +             F   PD++
Sbjct: 427 KKADYRKFRIKT--VEGPNDYASMEEVLTRRFKRGLKAD-----------AGFEKLPDLL 473

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           ++DGG+GQ++ A  VL KL +   + +  + K  +               + +       
Sbjct: 474 LMDGGRGQVNIALEVLDKLGIH--VPVAGMVKDDRHRTRG---LYYNNVEIPIPTDSEGF 528

Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           + I R++DE HRFAIT HR  R K    S LD+I  IG  RK  L+++F  +  I  +  
Sbjct: 529 HLITRIQDETHRFAITYHRLLRSKEQVRSVLDDIPNIGERRKMDLIRTFPDLASIRNADV 588

Query: 587 ETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           ETLA +  ++++ A  +Y+ FH     + T
Sbjct: 589 ETLAKVPSMNERAARSVYDFFHAEGKESDT 618


>gi|78189306|ref|YP_379644.1| excinuclease ABC subunit C [Chlorobium chlorochromatii CaD3]
 gi|90111062|sp|Q3AQX4|UVRC_CHLCH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78171505|gb|ABB28601.1| Excinuclease ABC subunit C [Chlorobium chlorochromatii CaD3]
          Length = 629

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 180/632 (28%), Positives = 301/632 (47%), Gaps = 52/632 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVT 63
            +P  PG+YQ  + AGR++YVGKA NL+ R++SY  +++    +   ++S I+++   +T
Sbjct: 23  TLPTSPGIYQFKNSAGRIIYVGKAKNLRNRVRSYFRNSHQLFGKTLVLVSHIDDLEVIIT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL+LE N+IK LKPR+N+ L+DDK++PY++IT+    P +   R         FG
Sbjct: 83  SSEVEALILENNLIKELKPRYNVNLKDDKTYPYLVITN-EPYPRILFTRHRRNDGSIAFG 141

Query: 124 PFASVDAVEKTINSL-----QRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+     +   ++ +      R+  LR   D++   + + CL + I +C G C G    +
Sbjct: 142 PYTEARQLRSILDLIGSIFPVRSCKLRLTPDAIASGKYKVCLDYHIHKCKGACEGLQPED 201

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + E  K L G    L   +  NM+ A  +  +E A   + ++ +L         +
Sbjct: 202 EYRQMIDEIIKLLKGKTSALIRSLTENMHLAATELRFEQAAEIKAQIESLKRYAERQKVV 261

Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              M   D F++   ++ AC        G+  G+   ++   +  + A +    L +FY 
Sbjct: 262 AADMVDRDVFAIAAGEDDACGVIFKIREGKLLGSQRIYINNTNGESEASMQLRMLEKFYV 321

Query: 296 D--KPCPENILLSEEAEETS--------LLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
           +  +P P+ ILL E   E          L++     Q    +++ VP+ G+K  ++    
Sbjct: 322 ESIEPVPDEILLQEALSEEEEETLRAFLLVKAKNEGQEKKGIRLVVPQIGDKAHLVGMCR 381

Query: 346 INAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
            NA     + L  +       ++        +   LP +P+RIE +DNSH  G   V  M
Sbjct: 382 QNARHHLEEYLIQKQKRGEAAREHFGLTALKELLHLPTLPQRIECFDNSHFQGTDYVSSM 441

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           V   +    K+ YRKF +     +  DD A M  VL RR+S  +                
Sbjct: 442 VCFEKGKTKKSDYRKFKIKT--FEGSDDYAAMDEVLRRRYSGSLTE-------------- 485

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519
             + PD++++DGGKGQ++ A   L++L V   I +I +AK  +     E F     +   
Sbjct: 486 SLALPDLIVVDGGKGQVNTAYKTLQELGVT--IPVIGLAKRIE-----EIFTPHSSDPFN 538

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578
           L    P L  +Q+LRDEAHRFAIT HRK R  +   + L  I GIG      LL+ FG+V
Sbjct: 539 LPKTSPALKLLQQLRDEAHRFAITYHRKLRSDRTLQTELTTIAGIGEKTAFKLLEHFGSV 598

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           + ++++S E L ++  I  K    +Y  +   
Sbjct: 599 ESVAQASREELQAV--IGAKAGETVYTFYRPE 628


>gi|121609653|ref|YP_997460.1| excinuclease ABC subunit C [Verminephrobacter eiseniae EF01-2]
 gi|189038128|sp|A1WLD5|UVRC_VEREI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|121554293|gb|ABM58442.1| Excinuclease ABC subunit C [Verminephrobacter eiseniae EF01-2]
          Length = 685

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 202/676 (29%), Positives = 308/676 (45%), Gaps = 76/676 (11%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D  G +LYVGKA +L++R+ SY   N+   RI HM+ +I  +  TV  +
Sbjct: 13  LPALPGVYRYFDSQGLLLYVGKARHLKRRVASYFTKNHGGTRIGHMVCKIARLETTVVRS 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-----------KHKIPALYKHRDS 114
           E EALLLE N+IK   PRFNIL RDDKS+PY+ IT              + P +  +R +
Sbjct: 73  EAEALLLENNLIKTQNPRFNILFRDDKSYPYLKITGAPASSAGRDAPGQRFPRIAYYRGA 132

Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
              Q  YFGP+ S  AV+++I  LQ+ F LR+C D+VF +RTRPCLL+QIKRCSGPC   
Sbjct: 133 VDKQHRYFGPYPSAWAVKESIELLQKVFRLRTCEDTVFANRTRPCLLYQIKRCSGPCVNL 192

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           I+ E Y   V  A+  LSG    L + +   M   + +  +E A   R+++ ALS + + 
Sbjct: 193 IAPEAYAVDVQHAQALLSGQTQELLQAMEARMMAYSGQLAFEQAAEVRNQMQALSRVLHQ 252

Query: 235 NDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL----- 286
                      D  ++      AC+       G++ G   +F     ++   +       
Sbjct: 253 QSIESAHDKDVDILAVRVQGGRACVNLAMVRGGRHLGDRPYFPTHLEDAALFEQETRDAE 312

Query: 287 ---------------SYFLRQFYTDKPCPENILLSEEAEETSLLEIS------------- 318
                            F+ Q Y     P  ++ S   ++  L  +S             
Sbjct: 313 EAPATPPRPVEALVLEAFVAQHYMVVAPPPVLVTSTPLDKALLEALSGHLTAAQGGDHAP 372

Query: 319 ---------------FFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
                             +    +      + ++R  +E A  NA     + L+ E S Q
Sbjct: 373 AAQGGDPPPAASSGGHPLRGTVHITAVHQPREQRRAWLEMAQKNADLQLARLLAQEGSQQ 432

Query: 364 MILKDFTKKFALP---HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
              +   +   LP     P  IE +D SH  G +     VV   +    ++YR++    +
Sbjct: 433 ARTRALAEALDLPLADLDPLTIECFDISHTAGEATQASCVVFHHHKMQSSEYRRY--KID 490

Query: 421 DVKTQDDCAMMRMVLERRFSQLIK-----NEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +   DD A MR VL RR+ +L +        +    P          PD+V++DGGKGQ
Sbjct: 491 GITGGDDYAAMRQVLTRRYGKLAEAAHEAGGVDCAARPAAPAQGQARLPDLVLIDGGKGQ 550

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEAL-VLNMRDPILYFIQRLR 534
           +  A+ V   L ++    I+ + KG  R  G+E+     G     L      L  + ++R
Sbjct: 551 VGVAREVFTALGLDLT-RIVGVEKGEGRKVGLEELVFADGREKASLGKDSAALMLVAQIR 609

Query: 535 DEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           DEAHRFAIT  R  R +       L EI G+GP ++  LLQ FG V+ ++ +S E L ++
Sbjct: 610 DEAHRFAITGMRAARARVRTGGGQLQEIAGVGPKKRARLLQRFGGVRGVASASVEDLITV 669

Query: 593 EGISKKIACKIYNHFH 608
           +GIS+ +A +IY    
Sbjct: 670 DGISRALAEEIYRALR 685


>gi|228473114|ref|ZP_04057871.1| excinuclease ABC subunit C [Capnocytophaga gingivalis ATCC 33624]
 gi|228275696|gb|EEK14473.1| excinuclease ABC subunit C [Capnocytophaga gingivalis ATCC 33624]
          Length = 595

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/624 (29%), Positives = 301/624 (48%), Gaps = 50/624 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P+ PGVYQ  D    ++YVGKA NL+KR+ SY +  + + +   ++S+I  I  
Sbjct: 7   LQVQTLPDNPGVYQFYDSTDTIIYVGKAKNLKKRVSSYFNKEHDSPKTRVLVSKIVRIEH 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ +PR+NILL+D KS+P+I I++  + P ++  R       +
Sbjct: 67  IVVATENDALLLENNLIKKYQPRYNILLKDGKSYPWICISN-ERFPRVFFTRKMLKDGST 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ ++  V   I+ ++  + LR+C      +++ + + + CL + IK C GPC G  
Sbjct: 126 YFGPYTNLKIVRTLIDLIKDLYPLRNCRLDLSQENIDKGKFKVCLEYHIKNCQGPCEGLQ 185

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E+Y   + + K+ L G    +       M +      +E A   + +L +L + Q+ +
Sbjct: 186 SEEEYNHNIQQIKEILKGNLKEVIAYFKEEMQEHAAALRFEEAHQIKLKLESLENYQHKS 245

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D FS+  +   A I       G      T  +K   E T  ++L   + +
Sbjct: 246 TIVSTKIHNVDVFSIVSDGEYAYINFLQVAHGAIVRGHTLEVKKKLEETEQELLELAIVE 305

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                      L+          E            +T+PK GEK ++++ +  NA    
Sbjct: 306 LRERFHSASKELIVPFPLTMEFAE-----------TLTIPKAGEKFQLLQLSERNAQAYR 354

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            +K         E     +L    +   L   P  IE +DNS+I G + V   VV     
Sbjct: 355 QEKFKQVKITDPERHTNRLLTQMQRDLRLSEPPAHIECFDNSNIQGTNPVAACVVFKNAK 414

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR FN+    V+  +D A M  V+ RR+ +L+  +E L              P +
Sbjct: 415 PSKKDYRHFNIKT--VEGPNDFASMEEVVYRRYRRLLDEDEPL--------------PQL 458

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +I+DGGKGQL AA   L+ L +  +I I+ IAK  +     E F+      L L+ +   
Sbjct: 459 IIIDGGKGQLGAALKSLELLGLRGKIAIVGIAKRLE-----EIFYPGDSVPLYLDKKSET 513

Query: 527 LYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ LR+EAHRF IT HR++R   A +S L++I+G+G   +  LL+ F +VK +  +S
Sbjct: 514 LKVIQHLRNEAHRFGITFHRQKRSASAIHSELEQISGVGKQTQEALLKQFKSVKRLKEAS 573

Query: 586 PETLASIEGISKKIACKIYNHFHK 609
            E + +  G S+  A K++ +FH 
Sbjct: 574 KEEIIACIGHSR--AQKVWEYFHP 595


>gi|24379665|ref|NP_721620.1| excinuclease ABC subunit C [Streptococcus mutans UA159]
 gi|81446291|sp|Q8CWX4|UVRC_STRMU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|24377620|gb|AAN58926.1|AE014960_7 putative excinuclease ABC (subunit C) [Streptococcus mutans UA159]
          Length = 595

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 171/617 (27%), Positives = 286/617 (46%), Gaps = 41/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY H +++T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+  KP++NI L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTGSNTEALLLEINLIQENKPKYNIRLKDDKSYPFIKITN-EPYPRLLITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C      +     + 
Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCKAHTICQTDQTYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
               + K FL+G +  +  ++   M +A+   ++E A  +RD +  +  ++     +   
Sbjct: 182 SLKEDVKNFLNGRDDKIVNELRDKMTKASELMEFERAAEYRDLIEGIGLLRTKQRVMNQD 241

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  Y +K   C+Q  F   G+            +ES    +             
Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFIRQGKLIQRDVNMFPYYNESEEDFLTYVGQFYQDNRHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I +    +ET +  +   K          P++GEK++++  A  NA     +    
Sbjct: 302 IPKEIFIPRNIDETLVKAVVNTKIIK-------PQRGEKKQLVNLATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++      +P    RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDIRKTHGAIENIGDLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++++                + PD++I+DGG+G
Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVMRDG--------------LTPPDLIIIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F    E + L       + +QR++
Sbjct: 458 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVIPLPRNSEEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K  +S  L+ I G+GP RK+LL++ F  +  I ++S + + +  
Sbjct: 516 DEVHRFAITFHRQLRGKNTFSSKLNGIAGLGPKRKQLLMKHFKNLPNIQKASLDDIIN-C 574

Query: 594 GISKKIACKIYNHFHKN 610
           GI K +A  I     + 
Sbjct: 575 GIPKNVAENIQESLREE 591


>gi|253702631|ref|YP_003023820.1| excinuclease ABC subunit C [Geobacter sp. M21]
 gi|259710342|sp|C6E9G2|UVRC_GEOSM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|251777481|gb|ACT20062.1| excinuclease ABC, C subunit [Geobacter sp. M21]
          Length = 649

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 203/619 (32%), Positives = 306/619 (49%), Gaps = 35/619 (5%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTV 62
           E  P  PGVY M      V+YVGKA NL+KR++SY      +   I  M+  ++++ + V
Sbjct: 8   ENFPSSPGVYLMKSADDTVIYVGKARNLKKRVRSYAGDTRDSRIHIRFMVQLVHSVDYLV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE  +IK+ +P++NI LRDDK++  + +  K + P L   R   +    YF
Sbjct: 68  TDTEKEALILENTLIKQHRPKYNINLRDDKTYFSLRMDMKEQFPRLSIVRKIPSDGARYF 127

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+AS  A ++ +  L + F LR    +    R RPCL  QIK+CS PC G IS+ +Y  
Sbjct: 128 GPYASATAAKEVLKQLYKMFPLRHYPLATCMARKRPCLYHQIKQCSAPCCGLISAAEYAA 187

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD--RLAALSHIQNHNDSIYN 240
               A  FL G N+ +       MN A+ +  YE A  +RD  R   ++  +    +   
Sbjct: 188 LAQGAALFLEGKNNEVARLYRSKMNLASEQMRYEDAARYRDLLRAIEVTVERQKMVAQSG 247

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPC 299
             D F ++   +   I       G   G  +F    + E+   + L+ FL ++Y  D P 
Sbjct: 248 DSDVFGVHREADRMQIALLHIRGGTLTGGRSFLFDWELETE--EGLASFLNEYYDLDAPI 305

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  +L+     E + LE    ++ G KV I VP++G K ++++ A  NA  +  ++L+ E
Sbjct: 306 PPQVLIPLPIAEPAALEELLSEKAGKKVTIAVPQRGPKLEMVKLAGKNAETAAQERLARE 365

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            S   +L +  +K  LPH P+RIE YD S+I G  AVG  VV  +    K+ YR++ +  
Sbjct: 366 SSSATLLTELAEKLNLPHPPRRIECYDISNIQGEMAVGSRVVFIDGRADKSLYRRYRIKG 425

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V   DD AMMR VL RRF      E+                PD++++DGG GQL   
Sbjct: 426 --VLQSDDFAMMREVLSRRFKADSHEEK----------------PDLIVVDGGLGQLGVL 467

Query: 480 QGVLKKLNVENRITIISIAK-GPKRSAGMEK--------FFVKKGEALVLNMRDPILYFI 530
             VL +L V   +    +AK    R    E+        F   +  A+ L      L  +
Sbjct: 468 NAVLDELEVTG-VEAAGLAKSRVARDMESEEIERSDERVFRPGRKNAIALRQSSAPLLLL 526

Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R+RDEAHRFA+T H+  R K    S LD + GIG  RK+ LL+ FG++K +  ++ E L
Sbjct: 527 VRIRDEAHRFAVTYHKDVRSKVLTGSELDGVAGIGEKRKKALLKHFGSLKRVKEATLEEL 586

Query: 590 ASIEGISKKIACKIYNHFH 608
               G+++  A  +    H
Sbjct: 587 KGAPGMTESAARALVERLH 605


>gi|219669065|ref|YP_002459500.1| excinuclease ABC subunit C [Desulfitobacterium hafniense DCB-2]
 gi|219539325|gb|ACL21064.1| excinuclease ABC, C subunit [Desulfitobacterium hafniense DCB-2]
          Length = 591

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/618 (29%), Positives = 296/618 (47%), Gaps = 49/618 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PGVY M D +G+++YVGKA  L+ R++SY   + H  +   MIS I +    +T +
Sbjct: 11  LPDKPGVYLMKDASGQIIYVGKAKVLKNRVRSYFTGS-HNGKTQLMISLIADFETIITDS 69

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEALLLE N+IK+  P++NILLRDDK++P+I IT     P +   R      G Y+GP+
Sbjct: 70  EVEALLLECNLIKKHNPKYNILLRDDKTYPFITIT-DEAHPRILVTRQVKKGAGKYYGPY 128

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++    L R F  R C     +   +PCL + + +C GPC  ++  E Y +   
Sbjct: 129 PNATAAKEAARLLNRLFPFRKCR----QIPNKPCLYYHLGQCLGPCQVDVPKEAYDKIRK 184

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           EA  FL G    + + + + M +A+   ++E A  +RD +  L  +    +   N     
Sbjct: 185 EAAAFLKGDQGAILKALEKKMKEASENLEFERAKEYRDLMEDLKKVGEKQNITLNDFVDR 244

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D     + ++  CIQ  +   G+      F           +    FL QFYT+      
Sbjct: 245 DVVGYAYTQDQLCIQIFYLRQGKLLSRDNFIFPY--YEEPEEAFVSFLAQFYTESSALPQ 302

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS- 361
            +L    + + L              + VP++G+KR +++ A+ NA  +  +++S EI  
Sbjct: 303 EILLPPLDISVLT---------KLFPMVVPQKGQKRDLVQMAMENAQTTLHEQISIEIRN 353

Query: 362 ---HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  L +      +P +   IE +D S+I G  +V  M+   +    ++QYRKF + 
Sbjct: 354 LTECTQALAEIGNALGIPSLR-TIESFDISNIAGTHSVAGMIQFLDGKPNRSQYRKFKIQ 412

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
           P  +   DD A M  V+ERR+++L +                   PD++++DGGKGQ+ A
Sbjct: 413 P--MPNMDDTASMHQVIERRYARLQQEN--------------LPLPDLILVDGGKGQIHA 456

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L  LN    I +  + K  K                 L+ R      ++R+++E H
Sbjct: 457 ALAALHSLNAA--IPVAGMVKNDKHQTSA--LIDAMDRIHSLDRRSAGFRLLERIQNEVH 512

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR++R K    S LD I G+GP R++ LL+ F ++  I +++ E L    G+  
Sbjct: 513 RFAITFHRQQRAKSMTLSELDGIAGVGPKRRQQLLKFFKSIDSIRQATLEELQQ-SGLPA 571

Query: 598 KIACKIYNHF--HKNTSH 613
             A  +Y HF  HK  +H
Sbjct: 572 PAAAAVYQHFNSHKEENH 589


>gi|320352580|ref|YP_004193919.1| Excinuclease ABC subunit C [Desulfobulbus propionicus DSM 2032]
 gi|320121082|gb|ADW16628.1| Excinuclease ABC subunit C [Desulfobulbus propionicus DSM 2032]
          Length = 620

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 191/613 (31%), Positives = 305/613 (49%), Gaps = 28/613 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY--MHSNNHTHRITHMISQINNIRFTVTCT 65
             PG+YQML    +VLYVGKA +L+KR+  Y       H+ +   M+S +  +   +T T
Sbjct: 29  HGPGIYQMLSKK-QVLYVGKARDLRKRLSQYAHFSGPIHS-KTAVMLSHVQRVETILTTT 86

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EAL+LEA++IK+ +PR+N++LRDDK++P I +T +   P +   R        YFGP+
Sbjct: 87  EKEALILEASLIKQHRPRYNVILRDDKNYPLIKVTTRDPWPRVVVTRKRLRDGNRYFGPY 146

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
           AS  A+  T+  L   F LR C     R RTRPCL FQ+ RC  PC G +   +Y   V 
Sbjct: 147 ASGTAMRATLQLLYAQFPLRRCK--TVRERTRPCLNFQMGRCLAPCAGLVDHAEYQRMVR 204

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +    L G    +  ++   M QA  +  +E A  +RD++  L+    H   + +     
Sbjct: 205 DVLLILEGKVDEVVRELTAKMEQAAEQLAFEKAARYRDQIRGLTRTIEHQAVVADHHLDQ 264

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F ++       I   F   G   G  +FFL       ++ +    L+ +  ++  P  
Sbjct: 265 DVFGIHRQDASVGIALLFVRGGMITGAQSFFLADPLGEDDSLLAQTILQYYSVERQPPRE 324

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +LL    E+  L+     +     V +  P++G++ +++  A  NA +  ++K   E S 
Sbjct: 325 LLLPFVLEDRDLIGERLAELREGPVSLLAPQRGKRMQLMRMAEANAAQIFSEKAKKEQSW 384

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           + +      K  L + P+ IE  D S++ G  AVG +V   +      ++R + +   D 
Sbjct: 385 EALATGLQAKLRLANRPEIIECLDISNLQGKQAVGSLVCFVQGDKAAKRFRHYRIRSQDT 444

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD AMMR VLERR ++ +  +   +                    GGKGQL  A  V
Sbjct: 445 P--DDYAMMREVLERRMAKGVAEDNLPDLLLLD---------------GGKGQLQVAVDV 487

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L   ++ +R+ +++IAK  K+  G + F   +   ++L    P+L ++ R+RDEAHRF I
Sbjct: 488 LGAFDLLSRVDLMAIAK-EKQEEGEKLFRPGRKNPVLLPAHSPVLLYLMRIRDEAHRFGI 546

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR+ R KA   S LD I+GIGP RK++LL + G+V+ I+ +  E LA + GI  ++A 
Sbjct: 547 TFHRRLRGKAQLRSQLDAIDGIGPKRKQMLLHTLGSVRRIAEAGIEELAEVPGIGPELAK 606

Query: 602 KIYNHFHKNTSHT 614
           +IY+  H      
Sbjct: 607 QIYSQLHGADHEP 619


>gi|323360113|ref|YP_004226509.1| nuclease subunit of the excinuclease complex [Microbacterium
           testaceum StLB037]
 gi|323276484|dbj|BAJ76629.1| nuclease subunit of the excinuclease complex [Microbacterium
           testaceum StLB037]
          Length = 647

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 189/641 (29%), Positives = 314/641 (48%), Gaps = 45/641 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            + ++P  PGVY+  D  GRVLYVGKA NL+ R+ +Y    ++   R   M++   ++ +
Sbjct: 15  KAGEIPTNPGVYRFRDAEGRVLYVGKAKNLRARLSNYFAPLHSLHERTRRMVTTAASVEW 74

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  ++V++L LE   IK   P FN+  +DDKS+PY+ IT   + P +   R+       
Sbjct: 75  TVVPSDVDSLQLEYMWIKEFDPPFNVRYKDDKSYPYMAITLADEAPRVIVTRNHKIRGAK 134

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+  V AV  TI+ + + F +R+C+DS ++      RPC   QI RC GPC+ +++ 
Sbjct: 135 YFGPYPKVWAVHDTIDLMIKVFPIRTCSDSSYKKAMQSGRPCFPGQIGRCGGPCSMKVTI 194

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND- 236
           E++   V++   F+SGG+    +++   M +A+   DYESA ++RDRL A+  +   +  
Sbjct: 195 EEHRAIVNDFVAFMSGGDQRFAKQLTARMKEASAAMDYESAALYRDRLQAIEAVLGKSAL 254

Query: 237 --SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             +     D F +  ++  A +Q      G+ RG     ++ + +   A ++   L++ Y
Sbjct: 255 VLAPDTDADLFGIAEDELAATVQHFVVRGGRVRGVRATTIEKEIDIAGADLVDQVLQRTY 314

Query: 295 TDKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            D      P  +L+ E  ++   LE    ++ G  V + V ++G K  +++ A +NA ++
Sbjct: 315 GDADAADIPRQVLVPELPDDAEQLEAWLRERRGRPVTLQVAQRGRKADLLKTATLNAQQA 374

Query: 352 HTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L D  +   L   P RIE +D SH+ G + V  MVV  +   
Sbjct: 375 LMLHKTRRTSDYVARSQALTDLQEALGLTEAPLRIECFDVSHLSGTNVVASMVVFEDGLP 434

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH--------------- 452
            K+QYR F +        DD   M  VL RR + L + +E                    
Sbjct: 435 RKDQYRSFGVAETT----DDTDSMYQVLTRRLAYLDRPDEEEPETIGGAIVAAPDSAEAT 490

Query: 453 ------PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506
                   ++   F   P ++++DGG+ Q++AA   L        I +  IAK  +    
Sbjct: 491 ADGEVVTARKRPRFAYRPQLLVVDGGQPQVTAAARALADAG-HEEIALCGIAKRLE---- 545

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPL 566
            E +   +   ++L      LY +QRLRDEAHRFAI   RKRRK+   S L E+ G+G  
Sbjct: 546 -EVWLPGEEYPVILPRTSEALYLLQRLRDEAHRFAIVHQRKRRKRDITSVLAEVPGLGDT 604

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R + LL+ FG+V  +  ++P+ + ++ GI   +A  I+ H 
Sbjct: 605 RIKALLRHFGSVTALKNATPDEITALPGIGPALAEAIHTHL 645


>gi|142521|gb|AAA87316.1| deoxyribodipyrimidine photolyase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|1770045|emb|CAA99578.1| deoxyribodipyrimidine photolyase [Bacillus subtilis]
          Length = 598

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 172/602 (28%), Positives = 302/602 (50%), Gaps = 43/602 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDK++P+I +T   + P L   R+    +G YFGP+
Sbjct: 71  NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+    +   R CL + + +C  PC  +IS E   E V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              +FL GG + +K+++   M++A    ++E A   RD++A +           N     
Sbjct: 186 SITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQIAHIESTMEKQKMTMNDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           IL+ +  +++ + ++        +  +  PK+G K++++  A  NA  +     +     
Sbjct: 306 ILVPDSIDQSMIEQLL-------ETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   + + P RI  +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERSIGAVQKLGEALNI-YTPHRIVAFDNSNIQGTNPVSAMIVFIDGKPYKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR++++++                   PD++I+DGGKGQ++A
Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ V++ +L ++  I I  +AK  K             E   L       Y +QR++DE 
Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLEVAYLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+A+ S LD+I GIG  RK++LL+ FG+VK +  +S E +    G+ 
Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIKKA-GVP 577

Query: 597 KK 598
           ++
Sbjct: 578 QR 579


>gi|330832693|ref|YP_004401518.1| UvrABC system protein C [Streptococcus suis ST3]
 gi|329306916|gb|AEB81332.1| UvrABC system protein C [Streptococcus suis ST3]
          Length = 594

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 175/614 (28%), Positives = 302/614 (49%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   +  G+++YVGKA NL+ R++SY    + T +   ++++I +  F 
Sbjct: 8   KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+  KPR+NI+L+DDKS+P+I IT K + P L   R      G Y
Sbjct: 67  VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLIITRQIKKDGGQY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +T+  L+R +  R C     ++    CL + +++C        S   Y 
Sbjct: 126 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLRQCLAHGDNMPSLSDYD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + V E  +FL+G +  + +++   M  A    ++E A  +RD L ++S ++     + + 
Sbjct: 182 KMVKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 241

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ ++ ++  +   K          P++GEK+++I  A  NA     +    
Sbjct: 302 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 355 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +    N V+  DD A MR VL+RR+S++++++               + PD++I+DGG+G
Sbjct: 414 Y--KINTVEGPDDYASMREVLQRRYSRVLRDD--------------LTPPDLIIIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 458 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAI  HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +A   
Sbjct: 516 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSIGNIQSASLQEIAEA- 574

Query: 594 GISKKIACKIYNHF 607
           G+  K+A K+    
Sbjct: 575 GVPYKVAEKVKESL 588


>gi|33602318|ref|NP_889878.1| putative excinuclease ABC subunit C [Bordetella bronchiseptica
           RB50]
 gi|33576757|emb|CAE33835.1| putative excinuclease ABC subunit C [Bordetella bronchiseptica
           RB50]
          Length = 579

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/595 (34%), Positives = 315/595 (52%), Gaps = 28/595 (4%)

Query: 24  YVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPR 83
           YVGKA +L+KR+ SY   N  + RI  M++++ ++  TVT +E EALLLE N+IK L+PR
Sbjct: 2   YVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTRSEAEALLLENNLIKSLRPR 61

Query: 84  FNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFF 143
           +NIL RDDKS+PY+LIT  H  P +  +R +++ +G YFGP+ +  AV +TI  LQ+ F 
Sbjct: 62  YNILFRDDKSYPYLLIT-GHAWPRIAYYRGATSKRGQYFGPYPNSWAVRETIQILQKVFR 120

Query: 144 LRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIA 203
           LR+C D+VF +R+RPCLL QI RCS PC G I +  Y   V  A +FL+G    + ++I 
Sbjct: 121 LRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAGDYAHDVQRAVRFLNGEAREVMDEIE 180

Query: 204 RNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRMDCFSLYHNKNLACIQTCF 260
             M QA+ +  +E A + RD++ +LS + +     +   +  D  ++       C+    
Sbjct: 181 ARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDDTDVIAVASAGGKICVNLAM 240

Query: 261 FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF 320
              G++ G   FF         AQ+L  F+ Q Y D   P  ++ S    ++ L+ +   
Sbjct: 241 VRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPPVLVCSHALPDSGLVGLLAE 300

Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380
           +      ++    QG +R  +EQA  NA  +  + L+   +         +   L    +
Sbjct: 301 QGGTRAARVLTRPQGVRRSWLEQAQKNAEMALARALTESGARAGRTLALAEALDLDTDEE 360

Query: 381 -----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435
                RIE +D SH  G +     VV   +    + YR++N+    +   DD A MR VL
Sbjct: 361 SLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYNIVG--ITPGDDYAAMRQVL 418

Query: 436 ERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495
            RRF ++   E                 P +V++DGGKGQ+  A+ V  +L ++ + +++
Sbjct: 419 TRRFGKVADGE--------------APMPGLVLIDGGKGQVEVARQVFVELGLDIQ-SLV 463

Query: 496 SIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554
            +AKG  R  G+E      G   + L      L  I ++RDEAHRFAIT  R RR K   
Sbjct: 464 GVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRDEAHRFAITGMRARRAKTRN 523

Query: 555 -SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            S L+EI GIG  R++ LL  FG +  +S +S E LAS+EGIS+++A +IY+  H
Sbjct: 524 VSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEGISQELAVRIYDALH 578


>gi|172058170|ref|YP_001814630.1| excinuclease ABC, C subunit [Exiguobacterium sibiricum 255-15]
 gi|171990691|gb|ACB61613.1| excinuclease ABC, C subunit [Exiguobacterium sibiricum 255-15]
          Length = 594

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/618 (29%), Positives = 298/618 (48%), Gaps = 47/618 (7%)

Query: 1   MSSEQ--MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + ++   +P+ PG Y   +  G V+YVGKA NL+ R++SY     H  +   +++ I + 
Sbjct: 7   IKAKLSLLPDEPGCYLHKNQFGEVIYVGKAKNLKNRVRSYFTGA-HDLKTERLVADIRDF 65

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            + +T +E+EALLLE  +IK+  P++NI+L+DDKS+PY+ IT+    P L   R      
Sbjct: 66  EYIITGSELEALLLEMTLIKKHDPKYNIMLKDDKSYPYLKITN-ETYPRLITTRKLKKDG 124

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G YFGP+ +  A  +T   L R + LR C         + CL + I +C GPC       
Sbjct: 125 GHYFGPYPNAYAANETKRLLDRLYPLRKCQPMP----KKLCLYYHIGQCLGPCEIPNLEG 180

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
              E V E ++FLSG   +L + + + M+ A  + ++E A   RD++ A+  I N  +  
Sbjct: 181 DQKEIVSEIRRFLSGETKDLVQSLQQKMSVAAEEMEFERAGELRDQIRAIESIMNKQNMI 240

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D F +Y +K   C+Q  F   G+               T A+ L  F+ QFY 
Sbjct: 241 TADLTARDVFGIYVDKGWMCVQVFFLRGGKMIERDVSLF--PIYGTPAEELESFIVQFYE 298

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P  I +     +  L E    + +        P +G KRK+++ A  NA  +  ++
Sbjct: 299 KNIKPSEIYVPPLVNQMLLKEALSLRVHV-------PVRGSKRKLLDLATKNAENAIGER 351

Query: 356 L----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                  E      +++      + H   RIEI DN++I G  AV  +VV  +   +K +
Sbjct: 352 FELIARDEKKTVQAVQELADAIDI-HPLSRIEIIDNANIQGADAVSALVVFEDGKPLKKE 410

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF +    V   DD   MR ++ RR+ +L+                    PD+V++DG
Sbjct: 411 YRKFKIKT--VTGPDDYESMREIVRRRYRRLLLEG--------------ARLPDLVLIDG 454

Query: 472 GKGQLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           G GQL+AA   +  +L +   + + S+ K  K        F + G  + L+ R    Y +
Sbjct: 455 GLGQLNAALEVIQDELGLS--LPVGSLKKDDKHRTSQ-LLFGEGGRLIELHPRSSAFYLL 511

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR++DE HRFAIT HR  R K    S LD+I G+GP R++ L++ FG+++ + +++ E L
Sbjct: 512 QRMQDEVHRFAITFHRSLRSKGMTRSLLDDIPGVGPKRRQQLIRHFGSMRSLKKANIEQL 571

Query: 590 ASIEGISKKIACKIYNHF 607
               G+  K+A  +  + 
Sbjct: 572 TEA-GLPVKLAETVAEYL 588


>gi|229135352|ref|ZP_04264142.1| UvrABC system protein C [Bacillus cereus BDRD-ST196]
 gi|228648105|gb|EEL04150.1| UvrABC system protein C [Bacillus cereus BDRD-ST196]
          Length = 594

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 294/611 (48%), Gaps = 43/611 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+
Sbjct: 71  NLEALILELNLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T   L R + LR C++       + CL + + +C  PC  E++ E+  E V 
Sbjct: 130 PNAQSAHETKKLLDRMYPLRKCSNMP----DKVCLYYHMGQCLAPCVKEVTDEQNKEIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  KFL+GG+  ++ ++   M +A+ K ++E A   RD++A +  I      I +     
Sbjct: 186 EIIKFLNGGHKEIRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +         +    P+ 
Sbjct: 246 DVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I++    +   +       +   +V+ T PK+G+K+ ++E A  NA  +           
Sbjct: 306 IVVPGSIDSELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFHLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      + +  K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ + 
Sbjct: 359 EERTIKAVDNLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++ +K                   PD++I+DGGKG L+A
Sbjct: 418 T--VQGPDDYESMREVVRRRYTRALKEN--------------LPLPDLIIIDGGKGHLAA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L +   I +  + K  K             E ++L       Y +QR++DE 
Sbjct: 462 TSDVLENELGLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR    K+   S LD+I GIG  RK++LL+ FG++K +  +S        G+ 
Sbjct: 519 HRFAITFHRHLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASISEFVEA-GMP 577

Query: 597 KKIACKIYNHF 607
           K +A  IY + 
Sbjct: 578 KNVAEMIYTYL 588


>gi|89894629|ref|YP_518116.1| excinuclease ABC subunit C [Desulfitobacterium hafniense Y51]
 gi|119367647|sp|Q24WC0|UVRC_DESHY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|89334077|dbj|BAE83672.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 607

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/618 (29%), Positives = 296/618 (47%), Gaps = 49/618 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PGVY M D +G+++YVGKA  L+ R++SY   + H  +   MIS I +    +T +
Sbjct: 27  LPDKPGVYLMKDASGQIIYVGKAKVLKNRVRSYFTGS-HNGKTQLMISLIADFETIITDS 85

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEALLLE N+IK+  P++NILLRDDK++P+I IT     P +   R      G Y+GP+
Sbjct: 86  EVEALLLECNLIKKHNPKYNILLRDDKTYPFITIT-DEAHPRILVTRQVKKGAGKYYGPY 144

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++    L R F  R C     +   +PCL + + +C GPC  ++  E Y +   
Sbjct: 145 PNATAAKEAARLLNRLFPFRKCR----QIPNKPCLYYHLGQCLGPCQVDVPKEAYDKIRK 200

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           EA  FL G    + + + + M +A+   ++E A  +RD +  L  +    +   N     
Sbjct: 201 EAAAFLKGDQGAILKALEKKMKEASENLEFERAKEYRDLMEDLKKVGEKQNITLNDFVDR 260

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D     + ++  CIQ  +   G+      F           +    FL QFYT+      
Sbjct: 261 DVVGYAYTQDQLCIQIFYLRQGKLLSRDNFIFPY--YEEPEEAFVSFLAQFYTESSALPQ 318

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS- 361
            +L    + + L              + VP++G+KR +++ A+ NA  +  +++S EI  
Sbjct: 319 EILLPPLDISVLT---------KLFPMVVPQKGQKRDLVQMAMENAQTTLHEQISIEIRN 369

Query: 362 ---HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  L +      +P +   IE +D S+I G  +V  M+   +    ++QYRKF + 
Sbjct: 370 LTECTQALAEIGNALGIPSLR-TIESFDISNIAGTHSVAGMIQFLDGKPNRSQYRKFKIQ 428

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
           P  +   DD A M  V+ERR+++L +                   PD++++DGGKGQ+ A
Sbjct: 429 P--MPNMDDTASMHQVIERRYARLQQEN--------------LPLPDLILVDGGKGQIHA 472

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L  LN    I +  + K  K                 L+ R      ++R+++E H
Sbjct: 473 ALAALHSLNAA--IPVAGMVKNDKHQTSA--LIDAMDRIHSLDRRSAGFRLLERIQNEVH 528

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR++R K    S LD I G+GP R++ LL+ F ++  I +++ E L    G+  
Sbjct: 529 RFAITFHRQQRAKSMTLSELDGIAGVGPKRRQQLLKFFKSIDSIRQATLEELQQ-SGLPA 587

Query: 598 KIACKIYNHF--HKNTSH 613
             A  +Y HF  HK  +H
Sbjct: 588 PAAAAVYQHFNSHKEENH 605


>gi|154499928|ref|ZP_02037966.1| hypothetical protein BACCAP_03585 [Bacteroides capillosus ATCC
           29799]
 gi|150271526|gb|EDM98783.1| hypothetical protein BACCAP_03585 [Bacteroides capillosus ATCC
           29799]
          Length = 616

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 175/622 (28%), Positives = 284/622 (45%), Gaps = 27/622 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY M D    V+YVGKA  L+ R+  Y     +HT +   M+SQI++   
Sbjct: 9   KAHALPLKPGVYIMQDKHNVVIYVGKAKALKNRVSQYFADLASHTEKTRAMVSQIDHFDV 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +E EAL+LE+++IKR +P +NILL+DDK +PYI +T     P       ++     
Sbjct: 69  IVADSEFEALVLESSLIKRHQPHYNILLKDDKGYPYIRLTVNEDYPRFSLANKAADDGAR 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  + +  I++L+    L SC     R   + RPCL + +  C G C   +  E
Sbjct: 129 YFGPYGSRGSTQGIIDALRAALKLPSCNRRFPRDIGKERPCLNYHMGLCDGYCRFGMPQE 188

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + +A + L G    + ++I   M QA  +  +E A   RDR  A+  +      +
Sbjct: 189 RYRDAIDQAIRLLEGQFKEVGDEIQAEMEQAAEELRFEKAAELRDRYRAIELLGKRQKVM 248

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY- 294
                  D    +     +C     +  G+        ++T  E   A ++S  +RQ+Y 
Sbjct: 249 AGSLADTDVVGFHRGTAKSCFVVLHYVDGELAAKDWDLMETPMEEEIADVVSALVRQYYG 308

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  ILL  E E+   L     +  G +V +  P++G K  +I  A  NA     +
Sbjct: 309 ERNQLPRQILLPCEIEDEVPLARLLSENAGRRVNLITPQRGAKMDLIRLANKNAEEEVAR 368

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
             + E     +L+   K   L   P R+E YD S+      V  MVV      +K  YR+
Sbjct: 369 WTTKEERTSKLLELLAKMLKLDKPPMRMESYDISNQGADDIVASMVVYQNARPLKRDYRR 428

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F L    +   DD A M  VL RRF + +  +E            F   PD++++DGG+ 
Sbjct: 429 FKLKD--MDAPDDYASMEQVLTRRFRRYLDGDE-----------KFKDLPDLLLIDGGEN 475

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
               A  VL+ L +   I +  + K  +           +G  + +     +   I +++
Sbjct: 476 HAKVAVKVLETLGLS--IPVFGMVKDDRHRTRA--LVTPEGREIGIQANQAVFSLIGQIQ 531

Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +E HRFAI  HR+++ +    S LD+I G+G  R+  LL+ F +VK I  ++ E L +  
Sbjct: 532 EETHRFAIEFHRQQQNQRVKGSVLDKIPGVGEKRRADLLKHFKSVKNIKAATLEELEAA- 590

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
            + K  A  +Y++F    +  P
Sbjct: 591 -VPKNTAKAVYDYFRGTQASQP 611


>gi|221315115|ref|ZP_03596920.1| excinuclease ABC subunit C [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221324315|ref|ZP_03605609.1| excinuclease ABC subunit C [Bacillus subtilis subsp. subtilis str.
           SMY]
          Length = 598

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 173/602 (28%), Positives = 303/602 (50%), Gaps = 43/602 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVTEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDK++P+I +T   + P L   R+    +G YFGP+
Sbjct: 71  NLEALILEMNLIKKHDPKYNVMLKDDKTYPFIKLT-HERHPRLIVTRNVKKDKGRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+    +   R CL + + +C  PC  +IS E   E V 
Sbjct: 130 PNVQAARETKKLLDRLYPLRKCS----KLPDRVCLYYHLGQCLAPCVKDISEETNRELVE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              +FL GG + +K+++   M++A    ++E A   RD++A +           N     
Sbjct: 186 SITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQIAHIESTMEKQKMTMNDLVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+  ++K   C+Q  F   G+             E+    +          +   P+ 
Sbjct: 246 DVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           IL+ +  +++ + ++        +  +  PK+G K++++  A  NA  +     +     
Sbjct: 306 ILVPDSIDQSMIEQLL-------ETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   + + P RIE +DNS+I G + V  M+V  +    K +YRK+ + 
Sbjct: 359 EERSIGAVQKLGEALNI-YTPHRIEAFDNSNIQGTNPVSAMIVFIDGKPYKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR++++++                   PD++I+DGGKGQ++A
Sbjct: 418 T--VTGPDDYGSMREVVRRRYTRVLREN--------------LPLPDLIIIDGGKGQINA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ V++ +L ++  I I  +AK  K             E   L       Y +QR++DE 
Sbjct: 462 ARDVIENELGLD--IPIAGLAKDEKHRTSN-LLIGDPLEVAYLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HR+ R K+A+ S LD+I GIG  RK++LL+ FG+VK +  +S E +    G+ 
Sbjct: 519 HRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSVKKMKEASLEDIKKA-GVP 577

Query: 597 KK 598
           ++
Sbjct: 578 QR 579


>gi|46446331|ref|YP_007696.1| putative excinuclease ABC subunit C [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81627340|sp|Q6MDC8|UVRC_PARUW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|46399972|emb|CAF23421.1| putative Excinuclease ABC subunit C [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 610

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/618 (31%), Positives = 303/618 (49%), Gaps = 29/618 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
             +  P  PGVY M +  G VLYVGKA NL++R+K Y          I +++++IN I  
Sbjct: 7   KIDLFPTLPGVYLMKNEEGEVLYVGKAKNLRQRVKQYFVPGRDGRLMIPYLVAKINYIET 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIP--ALYKHRDSSTIQ 118
            V  +E EALLLE N+IK+ KPR+N LL+DDKS+  + I+         L +++ +    
Sbjct: 67  IVVTSEKEALLLENNLIKQHKPRYNALLKDDKSYIALKISQNDAWATVRLVRYKGTPEPD 126

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G YFGP+ S  A  +T++ L R F LR C+D  F  RTRPCLL+Q+KRC GPCT + +  
Sbjct: 127 GLYFGPYTSAQAARQTLDLLNRLFPLRQCSDQEFARRTRPCLLYQMKRCVGPCTQKCTKG 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + +    KFL G N ++ + +   M   + + ++E A      +  +          
Sbjct: 187 EYQQHLDRTIKFLRGQNKDVLKDLYEEMRLLSEQLEFEKANHLLRTIRYIEKTIESQYVD 246

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D   L+       +    F  G+  G+  F      E  +  + S+ L+ +  
Sbjct: 247 RPLGHDADAIGLFRYGEHVVVVLMIFRGGKLVGSRHFEFDNIIEEDHELLTSFLLQHYEG 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P  ILL  +  +   +E     +   KV + +P++GEK+ +IE A  NA      +
Sbjct: 307 ATEIPSEILLPSKISDEHPVEEILSARREQKVNLQIPQRGEKKALIEIAQKNAEALFKTQ 366

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                  +  L +  +   L + P RIE +DNS+I G   V  MV   +      +YR +
Sbjct: 367 KDEATLREKTLLEMQELLFLTNYPTRIECFDNSNIAGSEPVSSMVAFTDGLKDSKRYRTY 426

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            L        DD A M  VL RR+ +  +  +                PD+V++DGGKGQ
Sbjct: 427 RLKI--GSKPDDYAAMYEVLTRRYKRAKEEND---------------MPDLVVVDGGKGQ 469

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRS----AGMEKFFVKKGEALVLNMRDPILYFIQ 531
           L+ A  V ++LN+   + ++ +AK   R        + F   + E ++L    PIL+ +Q
Sbjct: 470 LNIAIKVFEELNITG-VDLLGLAKEAGRHDKGMTAEQVFTCYQKEPILLKANSPILFLLQ 528

Query: 532 RLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           ++RDEAHR AI+ HRKRR KK   S LD+I GIGP +++ LL  FG++K I  ++   L 
Sbjct: 529 KIRDEAHRVAISFHRKRRSKKTLKSALDDIPGIGPAKRKTLLTHFGSLKKIELAADAELR 588

Query: 591 SIEGISKKIACKIYNHFH 608
            ++GIS      I   F 
Sbjct: 589 EVKGISAANIEAIRTFFQ 606


>gi|305666036|ref|YP_003862323.1| excinuclease ABC subunit C [Maribacter sp. HTCC2170]
 gi|88710811|gb|EAR03043.1| excinuclease ABC, C subunit [Maribacter sp. HTCC2170]
          Length = 596

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 192/624 (30%), Positives = 300/624 (48%), Gaps = 50/624 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +P  PGVYQ  D A  +LYVGKA NL+KR+ SY + N+   +   ++ +I +I+ 
Sbjct: 8   IQISTLPNSPGVYQFYDEADTILYVGKAKNLKKRVSSYFNKNHEYGKTRILVKKIRSIKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE+N+IK+ +PR+N+LL+DDKS+P+I I  K + P ++  R        
Sbjct: 68  IVVSTESDALLLESNLIKKYRPRYNVLLKDDKSYPWICI-KKERFPRIFPTRKLIKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S+  V+  +  ++  + LR+C      + +   + + CL + +  C GPC G  
Sbjct: 127 YFGPYTSMYTVKTLLELIRNVYPLRTCNYDLSEEKIKSGKYKLCLEYHLGNCLGPCEGLQ 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           SS  Y + + E +  L G   +  +     M        +E A   +D++A L + Q+  
Sbjct: 187 SSSDYDKQIDEIRSILKGNFKSSLQSFKNQMKLLADDMLFEEAQQIKDKIAVLENYQSKT 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  N +D FS+  + + A +       G    + T  +K   E  +  +L   + +
Sbjct: 247 TIVNPKINNVDVFSIIADDSFAYVNFLQISLGAIIRSHTMEIKKKLEEKDEDLLQLAIFE 306

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                      +         L      + +       VPK G+KRKI++ ++ NA    
Sbjct: 307 IRQRFNSESKEIY--------LPFKVVVEPHIKVT---VPKLGDKRKILDLSIRNAKYFR 355

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            ++ +       E     I+    K   L   P+ IE +DNS+I G + V   VV     
Sbjct: 356 QERFNQIKIVDPERHTNRIMAQMQKDIRLSTEPRHIECFDNSNIQGSNPVAACVVFKNGK 415

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K +YR +N+    V   DD A M  V+ RR+ +L+   + L              P +
Sbjct: 416 PSKKEYRHYNIKT--VVGPDDFASMEEVVYRRYKRLLDETQPL--------------PQL 459

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGGKGQLS+A   L  L +  +I II IAK  +     E +F +    L L+ +   
Sbjct: 460 IVIDGGKGQLSSALKSLDILGLRGKIAIIGIAKRLE-----EIYFPEDPIPLYLDKKSES 514

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ+LR+EAHRF IT HR +R K A  S L+ ING+G    R LL+ F +VK I  +S
Sbjct: 515 LKIIQQLRNEAHRFGITLHRNKRSKAAINSTLENINGVGEKTARDLLKKFKSVKRIKEAS 574

Query: 586 PETLASIEGISKKIACKIYNHFHK 609
            E +A + GISK  A KI   F K
Sbjct: 575 IEDIAQVVGISK--AKKIVETFRK 596


>gi|229543623|ref|ZP_04432683.1| excinuclease ABC, C subunit [Bacillus coagulans 36D1]
 gi|229328043|gb|EEN93718.1| excinuclease ABC, C subunit [Bacillus coagulans 36D1]
          Length = 590

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 188/613 (30%), Positives = 308/613 (50%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D  G ++YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 12  LPAQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGS-HDAKTQRLVSEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++NI+L+DDK++PYI +T   + P L   R     +G YFGP+
Sbjct: 71  NIEALILEINLIKKHDPKYNIMLKDDKTYPYIKLT-HERHPRLITTRKVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C +       R CL + + +C  PC  E+  E Y E   
Sbjct: 130 PNVQAANETKKLLDRLYPLRKCTNMP----DRVCLYYHLGQCLAPCVNEVKEETYKEITD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
           +  +FL+GG   +K+++   M++A  K ++E A  +RD++A +             +   
Sbjct: 186 QITRFLNGGYTEIKKELEEKMHEAAEKLEFERAKEYRDQIANIEMTMEKQKITMTDFTDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+        L    +    + LSY  + +   +     
Sbjct: 246 DIFGYAVDKGWMCVQVFFMRQGKLIERD-VSLFPSYDEPEEEFLSYLGQFYAKPEHIKPK 304

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
            +L  E  +  L E          +K+  PK+G+KR+++  A  NA  +  +K       
Sbjct: 305 EVLITEKADRELAEQLLE------IKVLQPKKGQKRELVLMAEKNAKIALKEKFALIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  +K  + + P RIE +DNS+I G + V  MVV  +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGEKLGI-YTPHRIEAFDNSNIQGTNPVSAMVVFVDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+ + ++                   PD++I+DGGKGQ+ A
Sbjct: 418 T--VEGPDDYESMREVIRRRYIRALREN--------------LPLPDLIIIDGGKGQIDA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L +E  I I  +AK  K +      F    E + L       Y +QR++DE 
Sbjct: 462 ARDVLENELGLE--IPIGGLAKDEKHNTSQ-LLFGNPLEVVPLGRNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K+A+ S LD+I GIGP RK+ LL+ FG++K + ++  E      GI 
Sbjct: 519 HRFAITFHRELRGKSAFQSALDDIPGIGPKRKKQLLRHFGSLKKMKQAKLEEFVEA-GIP 577

Query: 597 KKIACKIYNHFHK 609
           + ++  +     +
Sbjct: 578 RPVSEALIKKLQE 590


>gi|297621141|ref|YP_003709278.1| UvrABC system protein C [Waddlia chondrophila WSU 86-1044]
 gi|297376442|gb|ADI38272.1| UvrABC system protein C [Waddlia chondrophila WSU 86-1044]
          Length = 648

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 202/615 (32%), Positives = 307/615 (49%), Gaps = 32/615 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            +     PGVY M D AG+V+YVGKA NL++R++ Y          I  ++S++ +I   
Sbjct: 53  LKAFSTKPGVYLMKDKAGKVIYVGKAKNLRQRVRQYFVKGGDGRFMIPFLVSKVESIETV 112

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR--DSSTIQG 119
           V  +E EALLLE N+IK+ KPR+N LL+DDKS+  + +T  H  P +   R        G
Sbjct: 113 VVSSEKEALLLENNLIKKHKPRYNALLKDDKSYIALKLTRHH-WPRIDLVRYKGKPKADG 171

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGP+A   A  KT++ L + F LR C+D  F  R RPC+L+ IK+C  PC G  S E+
Sbjct: 172 IYFGPYAHAGAARKTLDLLHKIFPLRQCSDQEFARRNRPCILYDIKKCVAPCVGYCSKEE 231

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E   +A +FL G +  +   + R M + + +  YE A      + ++           
Sbjct: 232 YDELAAKAVRFLRGNDKEVIRDLYRKMERCSSEMQYEQAAEIYRTIQSIEKTVEGQHVDK 291

Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D   L+       +    F  G+  G+  F  ++ +   + +++  F+ Q Y D
Sbjct: 292 PLGVDADALGLHREGEEVLLALLMFKSGRLTGSKCFSFRSIA-QDDQELVQSFIFQHYAD 350

Query: 297 KPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            P  P  ++   + EE +++     +    K+ I  PK+GEKRK++E A +NA     ++
Sbjct: 351 LPSLPHEVIAPLDIEEGAIIAEHLSEGRSRKLSIISPKRGEKRKLVEMAAMNAESEFRKE 410

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
              +   +  L     KF L   PKRIE +D S I G   V   V   +     + YRK+
Sbjct: 411 KDADAIIERTLLQMRDKFHLSRYPKRIECFDISTISGEETVATKVAFLDGKKDASAYRKY 470

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    +   DD   M   L RRF +  K                   PD++++DGGKG 
Sbjct: 471 KIKT--LDRPDDYGAMYEALIRRFRKAEKEN---------------HLPDLLMIDGGKGH 513

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK----FFVKKGEALVLNMRDPILYFIQ 531
           L+ A  VL++LN+   + +I +AK   R    +     F     + L+L+    IL+F+Q
Sbjct: 514 LNVALRVLQELNI-ISVDVIGLAKEDSRHDKGQTLDQVFLPNVKDPLLLSRHSQILFFLQ 572

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           ++RDEAHR AI  HRKRR KA   S LD++ GIG  RK+ LL+ FG++K I  +S E L 
Sbjct: 573 KIRDEAHRTAIAFHRKRRSKALIKSALDDVPGIGNARKKALLKHFGSLKKIKEASIEELV 632

Query: 591 SIEGISKKIACKIYN 605
           SI GIS+++A  I  
Sbjct: 633 SIPGISEQLAELIRR 647


>gi|290580340|ref|YP_003484732.1| putative excinuclease ABC subunit C [Streptococcus mutans NN2025]
 gi|254997239|dbj|BAH87840.1| putative excinuclease ABC subunit C [Streptococcus mutans NN2025]
          Length = 595

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 170/617 (27%), Positives = 286/617 (46%), Gaps = 41/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY H +++T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+  KP++NI L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTGSNTEALLLEINLIQENKPKYNIRLKDDKSYPFIKITN-EPYPRLLITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C      +     + 
Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCKAHTICQTDQTYWG 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
               + K FL+G +  +  ++   M +A+   ++E A  +RD +  +  ++     +   
Sbjct: 182 SLKEDVKNFLNGRDDKIVNELRDKMTKASELMEFERAAEYRDLIEGIGLLRTKQRVMNQD 241

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  Y +K   C+Q  F   G+            +ES    +             
Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFIRQGKLIQRDVNMFPYYNESEEDFLTYVGQFYQDNRHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I +  + +ET +  +   K          P++GEK++++  A  NA     +    
Sbjct: 302 IPKEIFIPRDIDETLVKAVVNTKIIK-------PQRGEKKQLVNLATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++      +P    RIE +DNS+I G S V  MV   +    K  YRK
Sbjct: 355 LEKDIRKTHGAIENIGDLLNIPKPV-RIEAFDNSNIQGTSPVAAMVAFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++++                + PD++I+DGG+G
Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVMRDG--------------LTPPDLIIIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F    E + L       + +QR++
Sbjct: 458 QVNVARDVI-ENKLGLDIPIAGLQKNDKHQT-HELLFGDPLEVIPLPRNSEEFFLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K  +S  L+ I G+GP RK+LL++ F  +  I ++S + + +  
Sbjct: 516 DEVHRFAITFHRQLRGKNTFSSKLNGIAGLGPKRKQLLMKHFKNLPNIQKASLDDIIN-C 574

Query: 594 GISKKIACKIYNHFHKN 610
           GI K +A  I     + 
Sbjct: 575 GIPKNVAENIQESLREE 591


>gi|293390239|ref|ZP_06634573.1| excinuclease ABC, C subunit [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950773|gb|EFE00892.1| excinuclease ABC, C subunit [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 609

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 207/617 (33%), Positives = 339/617 (54%), Gaps = 32/617 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    V+YVGKA +L+KR+ SY      + +   +++ I +I  T+T 
Sbjct: 11  NVPHLPGVYRMYDDKSTVIYVGKAKDLKKRLSSYFRKQLSSKKTEALVASIQHIETTITT 70

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +PR+N+LLRDDKS+PYIL+T K   P +  +R S  IQG YFGP
Sbjct: 71  SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-KETHPRITAYRGSKKIQGEYFGP 129

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RC  PC    +++E Y + 
Sbjct: 130 YPNAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCLAPCVKGYVTNEAYAQQ 189

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           V+ A+ FL G +  + + + + M QA+ + ++E A   RD++ A+  +        +R D
Sbjct: 190 VNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARIRDQIQAVRAVIEKQFVANDRHD 249

Query: 244 C---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
                ++ +   +AC+Q  F   G+  G  ++F K  S +  A++   F+ QFY      
Sbjct: 250 DIDIIAIAYQLGVACVQVLFIRQGKILGNRSYFPKVPSNTNLAELTETFVGQFYLQAHQG 309

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  I++ ++ +E   LE     Q G KV I    +G+K K ++ A +NA  +   KL
Sbjct: 310 RTIPNTIIVDQKLDEKVDLETLLSDQAGRKVSIQDHAKGDKSKYLQLAQMNAKAALVTKL 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                         +   +  I  R+E +D SH MG   +   VV  ++G +K+ YR+FN
Sbjct: 370 KQSTLQHDRYVALQELLGIAVIK-RMECFDISHTMGEQTIASCVVFNQDGPLKSDYRRFN 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M   L +R+ + +++++                PD++ +DGGKGQL
Sbjct: 429 I--SGITKGDDYAAMEQALLKRYDKDLEDDKT---------------PDIIFIDGGKGQL 471

Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQR 532
           + A  V + LNV   +N+  +I +AKG  R AG+E   + K  + L L      L+ IQ 
Sbjct: 472 NRALQVFENLNVKWNKNQPHLIGVAKGVDRRAGLETLILSKWDKELHLPADSLALHLIQH 531

Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H  AI+ HRK+R++    S L+ I G+G  R++ LL+  G ++ +  ++ + +AS
Sbjct: 532 IRDESHNHAISGHRKKRQQYFTQSGLESIEGVGAKRRQALLKYLGGLQGVKNATLDEIAS 591

Query: 592 IEGISKKIACKIYNHFH 608
           + GISK +A KI+    
Sbjct: 592 VPGISKALAEKIFETLQ 608


>gi|160893084|ref|ZP_02073872.1| hypothetical protein CLOL250_00629 [Clostridium sp. L2-50]
 gi|156865167|gb|EDO58598.1| hypothetical protein CLOL250_00629 [Clostridium sp. L2-50]
          Length = 604

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 187/622 (30%), Positives = 297/622 (47%), Gaps = 37/622 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M +    ++YVGKA +L  R+  Y  +    + +I  M+S I    +
Sbjct: 7   ELKKLPHTPGVYLMHNKTDEIIYVGKAIDLYNRVHQYFQAGYKRSPKIEKMVSHIAWFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +  +E+EAL+LE N+IK  +P +N +L DDKS+PYI IT     P +            
Sbjct: 67  IICESEIEALVLECNLIKEHRPHYNTMLTDDKSYPYIKITVNEDFPRILFSHQMHRDHAR 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV+ TI+ L++ + LRSC   + +     RPCL + I +C  PC G IS E
Sbjct: 127 YFGPYTNAGAVKDTIDLLKKLYHLRSCNKKLPQETGLDRPCLYYHIGQCKAPCQGYISKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y   V +A  FL+G +    +++   M Q     ++E A   RD + ++ HI +     
Sbjct: 187 DYGRQVEQAIHFLTGHHRQTVKELEEKMKQLAADMEFEQAAEVRDLIESIKHIASKQRVD 246

Query: 239 YNRMDC----FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
               D         +N N   I   F   G+  G   F +      +   I++ FL+Q+Y
Sbjct: 247 NTTTDDRDVIAMAANNMNEGVISVFFIRNGKMIGREHFHMTGVQSESYGDIMAAFLKQYY 306

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH---- 349
              P  P+ I+L  E  E  L+E    ++ G  V I  P++G+K K+++ A  NA     
Sbjct: 307 ASTPFLPKEIILEHEVNEQELIEQYLSERRGNLVHILTPQKGDKAKLLKLARDNAFLVLT 366

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +   +    +   +   K+  +   +P    R+E +D SHI G  +V  MVV        
Sbjct: 367 QDTEKLKREQARTEGAAKELAELIGVPSAK-RLEAFDISHISGYHSVASMVVFENGKARP 425

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           N+YRKF L    +   DD A MR VL RRF+                +  F  +PD++++
Sbjct: 426 NEYRKFKLRT--IDGPDDYASMREVLTRRFT----------------DERFKVYPDILMM 467

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++ A  VL +L++   I +  + K          F     + +           
Sbjct: 468 DGGKGQVNIALEVLNELHL--NIPVCGMVKDDYHRTRGLYF---NNKEVEFPKNTQAFDM 522

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + RL+DEAHRFAI  HR  R K+  +S L++I GIGP R++ L+  F  +  I  +S + 
Sbjct: 523 VTRLQDEAHRFAIEYHRSLRSKSQVHSILEDIPGIGPARRKDLMGYFKDIAKIREASVDE 582

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           L  +  +++  A  +Y  FHK 
Sbjct: 583 LMQVSSMNRNAAEMVYEFFHKE 604


>gi|158522386|ref|YP_001530256.1| excinuclease ABC, C subunit [Desulfococcus oleovorans Hxd3]
 gi|158511212|gb|ABW68179.1| excinuclease ABC, C subunit [Desulfococcus oleovorans Hxd3]
          Length = 626

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 194/616 (31%), Positives = 302/616 (49%), Gaps = 27/616 (4%)

Query: 3   SEQM---PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNI 58
           +E++   P  PGVY M D AG ++YVGKA+NL+KR+ SY         +   ++ ++ + 
Sbjct: 19  AEKLAGAPARPGVYLMKDGAGAIIYVGKAFNLKKRLASYFVKKERLDLKTGLLMERVVDF 78

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
              VT TE EAL+LEA++I+R KPR+N+LL+DDK +P + I  +   PAL   R +    
Sbjct: 79  DTIVTATENEALILEASLIRRHKPRYNVLLKDDKRYPSLRIDPRQPYPALEIVRKTRPDG 138

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             YFGPF+S  AV +T+  + +TF LR C   VF+ R+RPC+ FQ+  C GPC  ++   
Sbjct: 139 AVYFGPFSSARAVRETLKVVDKTFRLRKCRGKVFKKRSRPCINFQMGLCLGPCFYDVPEN 198

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            Y E V E   FL G    L   +   M  A   +++E A + RDRL A+  +       
Sbjct: 199 DYAEAVREVSLFLKGRATELVSDLRVRMKGAAENQEFEKAALLRDRLFAIEKVIEKQVVV 258

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +   D  ++      + +       G   GT  F  +    S    + ++ ++ +  
Sbjct: 259 TPDFADRDVIAVAEEGRRSVVALLQVRKGVLSGTRFFHFEELLSSVADSLATFMVQYYTE 318

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ IL          +          +V + VP++GEK  +I+ A  NA       
Sbjct: 319 PGRVPDEILTDGTPFGGPWIADHLRDLAEKRVNMAVPRRGEKFLLIKMARENAQNELAAA 378

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                 HQ  L+   +K  L  +P RI   DNSH+ G   V  +VV  +     + YR++
Sbjct: 379 ALGARKHQKTLERLARKLGLSDVPARIACVDNSHLAGTGTVAAVVVFADGVPDPSAYRRY 438

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            L    V   DD A M+ VL RRF                         D++++DGG+GQ
Sbjct: 439 RL--AGVPAADDYAAMKQVLVRRF---------------AAGADDAGPVDLLLVDGGRGQ 481

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRS--AGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           L+ A  VL++  +  ++ + +I+K  +       + +   +   + L   DP L+ ++ +
Sbjct: 482 LNIAAAVLQEAGLAGKMGVAAISKKDEAKEETADKVYVPGRRNPVNLGPADPALFLLEEI 541

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAI   RK RK+ +  S LD+I GIGP RKR+LL  FGTV+ +  +S E LA++
Sbjct: 542 RDEAHRFAIDYQRKERKRISLRSALDDIPGIGPQRKRMLLDRFGTVEGVRAASVEDLAAL 601

Query: 593 EGISKKIACKIYNHFH 608
            GI+  +A +I  H  
Sbjct: 602 PGITGSMAGQIREHLR 617


>gi|51246330|ref|YP_066214.1| excinuclease ABC subunit C [Desulfotalea psychrophila LSv54]
 gi|81641459|sp|Q6AKB8|UVRC_DESPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|50877367|emb|CAG37207.1| related to excinuclease ABC, subunit C [Desulfotalea psychrophila
           LSv54]
          Length = 607

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 204/613 (33%), Positives = 320/613 (52%), Gaps = 23/613 (3%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTCT 65
           P  PGVY MLD   RV+YVGKA +L KR+ SY   S++  ++ T M+ ++  ++  +T T
Sbjct: 13  PHKPGVYLMLDAKARVIYVGKAKDLVKRLTSYTRHSSSEHNKTTVMLKKVEQVKTIITTT 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EAL+LEA++IK+ KPR+NI+LRDDK++PYI +T   + P +   R        YFGP+
Sbjct: 73  EKEALILEASLIKKHKPRYNIILRDDKNYPYIAVTVGEEWPRVMMVRRKRRDNSRYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
           +S  A+  T+  +   F LR+C     R RTRPCL  QI +C  PCTG +S + YME V 
Sbjct: 133 SSATAMWATLKLIASLFPLRNCRGEKLRPRTRPCLNRQIGKCLAPCTGNVSRKIYMENVD 192

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---M 242
           +    L G + +L  ++ R M QA+ + ++E A   RD++ AL                 
Sbjct: 193 KILLLLQGKSRDLLAELKRQMLQASERLNFEQAGQFRDQIRALKTTLEKQLVAAGHGKNQ 252

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +     +   F   G   G+ +FF++      +  +     + +  + P P+ 
Sbjct: 253 DVFGYVRSGTTVAVNILFVRDGLVSGSRSFFIEDYFGLDSQVLSQTISQYYDRETPPPKE 312

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL    E   LL         + ++I +P++G+   ++E A  NA +   +K   E S 
Sbjct: 313 ILLPFSPENFELLSEYLADFTTHILQIKIPQRGDSTILVEMANTNARQLFAEKEKKERSW 372

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           Q + K   +K  L   P+ IE  D S+I G  A+G +V        K+++R + +    +
Sbjct: 373 QSLGKSIKEKLQLSRTPETIECLDISNISGQHAIGSLVCFSGGEANKSRFRHYKIRT--I 430

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           +  DD  MMR V+ERRF + IK                 + P++ ++DGGKGQL  A  V
Sbjct: 431 EGPDDYGMMREVMERRFKRGIKE---------------GNLPNLFVVDGGKGQLGMAMAV 475

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
            ++L + N +  I IAK  +   G + +   +   ++L    P+L ++ R+RDE+HR+ I
Sbjct: 476 ARELGITNELDWIGIAK-ERHEEGEKLYKPGRKNPILLPAHSPVLLYLMRIRDESHRYGI 534

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HRK R +A   S LDEI GIG  RK+LLL+  G++K I  +S + L  +EGI   +A 
Sbjct: 535 TFHRKLRNRATLSSELDEIEGIGDNRKKLLLKKIGSLKKIKEASLQKLQEVEGIGPLLAK 594

Query: 602 KIYNHFHKNTSHT 614
           KIY    ++ + +
Sbjct: 595 KIYTSLQRDKNKS 607


>gi|88856199|ref|ZP_01130859.1| excinuclease ABC subunit C [marine actinobacterium PHSC20C1]
 gi|88814518|gb|EAR24380.1| excinuclease ABC subunit C [marine actinobacterium PHSC20C1]
          Length = 640

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 190/635 (29%), Positives = 300/635 (47%), Gaps = 42/635 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D   RVLYVGKA NL+ R+ +Y    ++   R   M+    N+ +T+ 
Sbjct: 13  DIPIQPGVYRFTDERKRVLYVGKAKNLRSRLSNYFAPLSSLHERTRRMVLSAVNVEWTIV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             + EAL LE   IK   P FN+  +DDKS+PY+ IT    +P +   R+ +     YFG
Sbjct: 73  GNDFEALQLEYTWIKEFDPPFNVQYKDDKSYPYLAITMGDAVPRVLVTRNRNLPNARYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+  T++ + + F +RSC+ SV++      RPCLL  I +C+ PC G +S E +
Sbjct: 133 PYSRAWAIRDTVDVMLKAFPMRSCSTSVYKRAQQTGRPCLLGDIGKCAAPCVGRVSLEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
                +   F++G +  +   I  NM QA   +DYESA  +RD++ A+      N  + +
Sbjct: 193 KSIALDFASFMAGNDSRMLNSIRENMTQAAAAQDYESAARYRDQIGAMETALAKNQIVLS 252

Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F + H++  A +Q      G+ RG   + +  + +     ++   L+  Y D 
Sbjct: 253 EDVDADFFGIAHDELAAAVQQFVVRGGRIRGVRGWVVDKELDVDLGGLVESVLQYAYDDA 312

Query: 298 PCPENILLSEEAEETSLLEISFFKQYG--YKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           P P +IL+    E+++ LE    ++ G   + ++ V ++GEK  + +    NA  +    
Sbjct: 313 PPPRDILVPAVPEDSAALEEWLSQRRGLGARTRLRVAQRGEKAALAQTVETNAKNALMLY 372

Query: 356 LSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
            S            L D  +   +   P R+E +D SH+ G + V  MVV  +    K  
Sbjct: 373 KSKRSGDFVARSQALADIQEALGMAEAPLRMECFDVSHLSGTNVVASMVVFEDGLPKKKH 432

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE-------------------NLNFH 452
           YR+FN+      T DD   +  VL+RR + L   +                      +  
Sbjct: 433 YRRFNI----AATTDDTDSIYQVLKRRLAYLAAGDAVPESSVPASEAPAHLMPDSGSDGD 488

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
                  F   P ++I+DGG+ Q+SAAQ  L++  V   I +  IAK  +     E +  
Sbjct: 489 VSTPTAKFAYPPQLLIVDGGQPQVSAAQRALEESGVSG-IQLAGIAKRLE-----EIWLP 542

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
                ++L      L+ IQRLRDEAHRFAIT  R+RR K   S L  + G+GP R + LL
Sbjct: 543 NSDFPVILPRNSDALFLIQRLRDEAHRFAITHQRQRRSKDVSSILATVPGLGPSRIKALL 602

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           Q FG+V  +  +S E +  + GI    A  I    
Sbjct: 603 QHFGSVVRLRAASTEAIMEVPGIGASTADAIIQKL 637


>gi|206901843|ref|YP_002251194.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12]
 gi|226698348|sp|B5YF86|UVRC_DICT6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|206740946|gb|ACI20004.1| excinuclease ABC, C subunit [Dictyoglomus thermophilum H-6-12]
          Length = 599

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 186/615 (30%), Positives = 308/615 (50%), Gaps = 33/615 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E  PE  GVY   D +G+V+YVGKA NL+KR+ SY   N+ + +  +++ +  NI F 
Sbjct: 13  KVENFPESTGVYIFYDHSGKVIYVGKAKNLRKRVLSYF--NDDSPKSNYILKKAKNIEFY 70

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T TE EAL+LE+ +IK+ +P  N+ LRDDK +P + +T   + P L   R        Y
Sbjct: 71  ITDTETEALILESVLIKKYRPIMNVQLRDDKQYPMLKLTLYEEYPRLVLARRFEDDGARY 130

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKY 180
           +GP+     V +TI+ +++ F LRSC  ++ + +  RPCL + I  C  PC   I+ E+Y
Sbjct: 131 YGPYTQSGTVRETISMVKKIFNLRSCNWNLPKSKPKRPCLNYFIGNCKAPCQNYITKEEY 190

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E V     FL G    + EK+   M + +   ++E A   RD++  L ++      +  
Sbjct: 191 WEIVKGVIDFLDGKYEEIIEKLYDQMQEYSKNLEFEKAAKIRDKIRLLQNLSEKQKIVSF 250

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D    Y   + A         G+      F L      +N +++  F+ Q+Y+  
Sbjct: 251 NRENKDLIQFYVEDHKAKALVYLIREGKLIEKRIFNLTLPEICSNDELIESFVLQYYSRG 310

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             PE I++     E  +    F  +      +    + E+    E+ L  A +  T +  
Sbjct: 311 EIPEVIVVPSPFSEEEVNLKEFLCKRKGSEVVLRTPENEEE---EKLLGMALKDLTIESI 367

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                 + L +  + F L ++P  IE YD S++ G  AVG  V        K +YR++ +
Sbjct: 368 KSEKVWLALSELQRIFNLQNLPVSIEGYDISNLQGREAVGSRVYFQNGYPEKTKYRRYKI 427

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   +D  M++ V+ RR   + ++                  PD++++DGGKGQLS
Sbjct: 428 KYTPELP-NDYLMLQEVIRRRLKNIEED----------------PLPDIMLIDGGKGQLS 470

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A   V  +L +E +  I+++AK  +     E F   + E ++L+   P L+ +Q++RDEA
Sbjct: 471 AVLEVFNELKIEPKF-ILALAKEKE-----EIFVPGRSEPILLSYDSPALHLLQQVRDEA 524

Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA++ HRK R KK   S LD+I G+G  R ++LL++F T++ + ++S E L  + GIS
Sbjct: 525 HRFAVSYHRKLRSKKLMDSHLDKIPGVGEKRMKILLEAFSTLENLKKASLEDLKKVPGIS 584

Query: 597 KKIACKIYNHFHKNT 611
           +KIA KIY +FH ++
Sbjct: 585 EKIAEKIYLYFHDSS 599


>gi|222151567|ref|YP_002560723.1| excinuclease ABC subunit C [Macrococcus caseolyticus JCSC5402]
 gi|222120692|dbj|BAH18027.1| excinuclease ABC subunit C [Macrococcus caseolyticus JCSC5402]
          Length = 598

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 175/621 (28%), Positives = 294/621 (47%), Gaps = 47/621 (7%)

Query: 1   MSSEQ----MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQIN 56
           +  +     +P  PG Y M D   +V+YVGKA NL+ R++SY   + H  + T ++ +I 
Sbjct: 10  IQIKNKLSVLPSEPGCYLMKDRNNQVIYVGKAKNLRNRVRSYFTGS-HDEKTTRLVMEIR 68

Query: 57  NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116
           +  + VT TE+E+LLLE  +IK+  PR+NILL+DDKS+P+I IT+  K P L   R    
Sbjct: 69  DFEYIVTSTEIESLLLELTLIKKHYPRYNILLKDDKSYPFIKITN-EKHPRLLVTRTVKK 127

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
             G YFGP+ +  A  +T   L R    R C         + CL + I +C GPC  ++ 
Sbjct: 128 NSGKYFGPYPNAYAAHETKKLLDRIIPFRKCTHLP----DKLCLYYHIGQCLGPCVYDVD 183

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
             +Y  ++     FL+G +  + E++   MN+     ++E A  +RD +  +  +     
Sbjct: 184 QAEYQRYIQIVTNFLNGQDTTIVEELKEKMNEKAENLEFEEAKEYRDLIQHIESLMFKQK 243

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            + + M   D F    +K   C+Q  F   G         +    ++ +           
Sbjct: 244 MMTSDMTTRDIFGFNVDKGWMCVQVFFIRQGNLIERKVQMIPLMDDAKSHFYNFIGQFYQ 303

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
             +   P  + +    +   +  +   K       +  PK+G+K+++++ A+ NA  +  
Sbjct: 304 LEENILPGEVHIPLGLDIEMVRSVVDTK-------VIQPKKGKKKEMVDLAVKNATIALA 356

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                    E      +++      +     RIE +DNS+I G   V  M+   +    K
Sbjct: 357 NKFDIIERDESRTIKAIEELGNAMGIETP-IRIEAFDNSNIQGVDPVAAMITFVDGRPSK 415

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+ +    V   DD A MR V+ RR+++++K                   PD++I+
Sbjct: 416 RDYRKYKIKT--VSGPDDYASMREVVRRRYTRVLKEN--------------LPLPDLIIV 459

Query: 470 DGGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           DGGKG +++ Q V + +LN++  I +  + K  K     E  +      + LN +    Y
Sbjct: 460 DGGKGHMTSVQDVLINELNLD--IPVAGLKKNDKHMTS-ELIYGDDFNIIPLNKKSQSFY 516

Query: 529 FIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +QR++DE HRFAI+ HR  RRK    S LDEI G+GP RK+ L++ FG+VK I  +S E
Sbjct: 517 LLQRIQDEVHRFAISFHRNTRRKTGLSSQLDEIEGMGPKRKQKLMKHFGSVKRIKEASVE 576

Query: 588 TLASIEGISKKIACKIYNHFH 608
            + +  G+ +K+A +I    +
Sbjct: 577 EIRAA-GLPEKLAIEIKTKLN 596


>gi|251772244|gb|EES52814.1| excinuclease ABC, C subunit [Leptospirillum ferrodiazotrophum]
          Length = 622

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 189/612 (30%), Positives = 308/612 (50%), Gaps = 31/612 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVTC 64
           +P+ PGVY M D  G VLYVGK+  L+ R++SY       + RI  M  ++ NI   VT 
Sbjct: 18  LPDSPGVYLMKDDKGEVLYVGKSKCLKDRVRSYFQKTRPTSPRIRKMTERVANIETLVTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E++AL+LE  +IK+ +PRFN+L RDDK++PY+  +     P L   R  S      FGP
Sbjct: 78  SELDALILENTLIKKYRPRFNVLFRDDKTYPYLRFSWSEDFPRLTVTRRVSRSPDLTFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +A+  A+ +T+ S+ R F L +C+  + +   RPC+ +QI RC GPC G ++ E+Y    
Sbjct: 138 YANPSALRETLGSISRIFPLATCSLDLGKTIDRPCIEYQIGRCLGPCAGLVTREEYRRMA 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR--- 241
              + FL G N +L+  +   M       ++E A   + RL ++  I       +     
Sbjct: 198 DGVRLFLEGKNSDLETLLHNEMVGHAKNLEFEKAARSKHRLESIRTILERQTVEFRIPSA 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--C 299
           +D  ++  ++  A I+      G+  G     ++   + +   +L  FL Q Y+ +    
Sbjct: 258 VDAVAVETDEGSAQIELLSVRNGRIAGRREVHIRNFDQDSPDDLLMAFLEQHYSQETTAL 317

Query: 300 PENILLSEEAEETSLLE-ISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
           PE ILLS      +L+      ++ G KV +T P++GEK+ ++E A  NA  S  ++  +
Sbjct: 318 PEEILLSHPLSHEALMNLEWMSEKKGGKVIVTHPRRGEKKTVVELAQNNARASLKERGKS 377

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +   +  L++  +   L   P  I   D S+      V  +VV  +    K+ YR+F + 
Sbjct: 378 QSDLRQALEEVREMLGLEQAPGSIGCVDISNTGDSYPVASLVVFVDGLPEKSLYRRFRIR 437

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            +  + QDD  M+  VL R F                        PD++++DGG+ QL A
Sbjct: 438 YD--RGQDDFRMLAEVLSRHF-------------------DERPLPDLLLIDGGEPQLRA 476

Query: 479 AQGVLKKLNVENRIT-IISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDE 536
           A   L+++    R   +I IAK   R+  +E+    +    L+L    P  + + R+RDE
Sbjct: 477 ALAALQQIGKAPRPKQVIGIAKERSRTGHLERLVSPEFDSPLILPPHRPATHLLMRVRDE 536

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT HRK R++A  +S L +I GIGP R++ LL +FG+V+ +  + PE +A   G+
Sbjct: 537 AHRFAITYHRKLREEALTHSRLLDIPGIGPSREKQLLLTFGSVEELKSAGPERIAREGGL 596

Query: 596 SKKIACKIYNHF 607
              +A +I  H 
Sbjct: 597 PASLARRIAEHL 608


>gi|222153201|ref|YP_002562378.1| excinuclease ABC subunit C [Streptococcus uberis 0140J]
 gi|254764947|sp|B9DUK9|UVRC_STRU0 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|222114014|emb|CAR42347.1| UvrABC system protein C [Streptococcus uberis 0140J]
          Length = 591

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 166/616 (26%), Positives = 290/616 (47%), Gaps = 41/616 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPDSPGCYLHKDKHGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEMLVSEIEDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I++  P++NI L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTGSNTEALLLEINLIQKNMPKYNIKLKDDKSYPFIKITN-EPFPRLLITRQIKKQDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + +     + C  + + +C+     +     + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCNAHSICQTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V + K FL+G +  +   +   M  A+   ++E A  +RD ++ ++ ++     +   
Sbjct: 182 GLVEDVKLFLTGKDDKIVTGLKEKMLAASQAMEFERAAEYRDLISGIATLRTKQRIMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +E+    +             
Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEEDFLTYIGQFYLDQKHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + +  ++  +  +   K          P++GEK++++  A  NA     +    
Sbjct: 302 LPKEVFIPDTIDQDLVQAVVPTKIVK-------PQRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   +  +    +   +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDLRKTKGAIDHLGQLLQIDRP-YRIEAFDNSNIQGTSPVAAMVVFKDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K++                 PD++I+DGG+G
Sbjct: 414 FKIKT--VTGPDDYASMREVIFRRYSRVLKDK--------------LEMPDLIIIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +  +I I  + K  +     E  F    E + L       + + R++
Sbjct: 458 QVNVAKDVI-ENQLGLQIPIAGLQKNDRHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ LL+ F  +  IS++S + + S+ 
Sbjct: 516 DEVHRFAITFHRQVRSKNSFSSKLDGIEGLGPKRKQALLKHFKNMTAISQASVDEVRSL- 574

Query: 594 GISKKIACKIYNHFHK 609
           GI +K+A  + + F++
Sbjct: 575 GIPEKVAQALLDSFNE 590


>gi|328954575|ref|YP_004371909.1| UvrABC system protein C [Desulfobacca acetoxidans DSM 11109]
 gi|328454899|gb|AEB10728.1| UvrABC system protein C [Desulfobacca acetoxidans DSM 11109]
          Length = 650

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 187/619 (30%), Positives = 305/619 (49%), Gaps = 29/619 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P   GVY        VLYVGKA NL+ R++SY+  +    +   ++  I  + F VT 
Sbjct: 17  HIPSGCGVYLFKGAREEVLYVGKAVNLKNRLQSYLR-DQPGLKTAALLEHIVLVDFLVTA 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LE N+IK+ +PR+NI LRDDK+F  + +  + ++P L   R  +     YFGP
Sbjct: 76  TEREALILERNLIKQHRPRYNINLRDDKNFLCLRLDIREEVPRLRLVRRFAPDGARYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  AV + +  +++ F LRSC D     R RPCL +Q+ +C  PC G +S   Y +  
Sbjct: 136 YTSSAAVRELLKFMKKVFRLRSCKDRGIPKRIRPCLNYQMGQCLAPCCGLVSLADYHQAA 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            EA  FL G    L++++   M+QA  +  YE A   RDRLA L                
Sbjct: 196 QEALLFLQGQGRKLRQELTVKMHQAAAELRYEEAASLRDRLALLERTLAQQVVQNPSTKD 255

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   L   +    +       G   G+  +F K   E     + ++  + +  D+  P+
Sbjct: 256 QDVLGLAREEETVMVVVLLVRRGMVTGSLPYFFKKVQEDDADLLEAFLKQYYSPDRFVPD 315

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            +L     E+  +LE    +Q G  V++  P+QG +R++++ A  NA  +  ++LS    
Sbjct: 316 EVLSPLNLEDKEVLEDLLKEQKGANVRLLFPRQGPRRQLLDLAQDNAMAALKRQLSLGPQ 375

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               + +  ++  L   P+R+   D SH+ G   VG MVV  +N   K+ YR+F +    
Sbjct: 376 IDPAV-ELQERLKLGAPPRRLACLDISHLQGSQPVGAMVVFWDNQPDKSAYRRFRIRD-- 432

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           V  QDD AM+   + R+F+                     + PD++++DGG GQLS    
Sbjct: 433 VVGQDDPAMLAETVRRQFT-----------------AGDSALPDLLVIDGGLGQLSVVGK 475

Query: 482 VLKKLNVENRITIISIAK----GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            L+ + + +R+ +I +AK       R+     +   +   L L    P L+ + RLRDEA
Sbjct: 476 TLEDIGIADRLPVIGLAKAGILADGRAVRDRIYLPGRKNPLFLPPNSPALFLLMRLRDEA 535

Query: 538 HRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI+ HRK+ R++A +S LD+I G+GP R++ L+Q F  +  + R+    L ++  + 
Sbjct: 536 HRFAISFHRKKAREQALHSVLDQIPGLGPKRRQRLMQRFPDIASLHRAPLAELINMPNLP 595

Query: 597 KKIACKIYNHFHKNTSHTP 615
           + +A  ++   +     TP
Sbjct: 596 RSVAEDLHRLLNNEGHATP 614


>gi|332519248|ref|ZP_08395715.1| excinuclease ABC, C subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332045096|gb|EGI81289.1| excinuclease ABC, C subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 600

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/626 (29%), Positives = 305/626 (48%), Gaps = 50/626 (7%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVYQ  +  G ++YVGKA NL+KR+ SY    +   +   ++ +I +I+ 
Sbjct: 8   ILLKTLPTSPGVYQYYNAEGTIIYVGKAKNLRKRVTSYFTKTHDNGKTRVLVKKIADIKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ KPR+N+LL+DDKS+P+I I  K + P ++  R        
Sbjct: 68  IVVKTETDALLLENNLIKKHKPRYNVLLKDDKSYPWICI-KKERFPRVFPTRRVIKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S+  V+  ++ ++  + LR+C      +++   + + CL + +  C GPC G  
Sbjct: 127 YFGPYTSMKTVKTLLDLIKGLYKLRTCNYKLSHENIASGKFKVCLEYHLGNCKGPCEGLE 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           +   Y E +   ++ L G   +  E+    M        +E A   ++++  L + Q  +
Sbjct: 187 TEASYQENITAIREILKGNFKDSLEQFKEQMQIFAENMQFEDAQKIKEKIEVLENYQAKS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D FS+  +++   I      +G    + T  +K   + T+ ++L   + +
Sbjct: 247 TIINPKISNVDVFSIVSDESYGYINFLQISYGSIIRSHTLEIKKKLDETDKELLELAIIE 306

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                      +              F    G  +K+++P+ G+KR+I++ ++ NA    
Sbjct: 307 IRERFNSKSKEIYV-----------PFKVNVGQDIKVSLPQLGDKRRILDLSIRNAKYYR 355

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            ++         +   + I+    K   L   P+ IE +DNS+I G + V   VV     
Sbjct: 356 MERFKQVKITDPDRHVKRIMAQMQKDLRLSEEPRHIECFDNSNIQGTNPVAACVVFKNGK 415

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR FN+    V   DD A M  V+ RR+ +L++ EE L              P +
Sbjct: 416 PSKKDYRHFNIKT--VVGPDDFASMEEVVYRRYKRLLEEEEPL--------------PQL 459

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +I+DGGKGQLS+A   L  L +  +I II IAK  +     E F+      L L+ +   
Sbjct: 460 IIIDGGKGQLSSALKSLDVLGLRGKIAIIGIAKRLE-----ELFYPNDPIPLYLDKKSET 514

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ+LR+EAHRF I  HR +R K A  + +  I GIG      LL+ F + K I+ + 
Sbjct: 515 LKIIQQLRNEAHRFGIEHHRNKRSKQALNTEMQSIPGIGEKTIVDLLKVFKSAKRIANAK 574

Query: 586 PETLASIEGISKKIACKIYNHFHKNT 611
            + L ++ G+S+  A KIYN+FHKN 
Sbjct: 575 LDELENVVGVSR--AEKIYNYFHKND 598


>gi|163857568|ref|YP_001631866.1| excinuclease ABC subunit C [Bordetella petrii DSM 12804]
 gi|163261296|emb|CAP43598.1| excinuclease ABC subunit C [Bordetella petrii]
          Length = 579

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/596 (34%), Positives = 309/596 (51%), Gaps = 28/596 (4%)

Query: 24  YVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPR 83
           YVGKA +L+KR+ SY   N  + RI  M++++  +  TVT +E EALLLE N+IK L+PR
Sbjct: 2   YVGKARDLKKRVSSYFQKNLASPRIAQMVAKVARVEVTVTRSEAEALLLENNLIKSLRPR 61

Query: 84  FNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFF 143
           +NIL RDDKS+PY+LIT  H+ P +  +R ++  +G +FGPF +  AV +TI  LQ+ F 
Sbjct: 62  YNILFRDDKSYPYLLIT-GHEWPRIAYYRGATNKRGQFFGPFPNAWAVRETIQILQKVFR 120

Query: 144 LRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIA 203
           LR+C D+VF +R+RPCLL QI RCS PC G I ++ Y   V  A +FL+G    +  +I 
Sbjct: 121 LRTCEDTVFANRSRPCLLHQIGRCSAPCVGAIGADDYARDVARAARFLNGEAREVMGEIE 180

Query: 204 RNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCF 260
           + M QA+ +  +E A   RD++ +L+ + +            D  ++       C+    
Sbjct: 181 QRMLQASSELRFEEAAALRDQMGSLARVLHQQTMEDTSGEDTDIIAVAAAGGKTCVNLAM 240

Query: 261 FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF 320
              G++ G   FF          Q+L  F+ Q YTD P P  ++ S    +  L+ +   
Sbjct: 241 VRAGRHLGDKPFFPVHVDGQDAPQVLEAFIAQHYTDNPLPPVLVCSHALPDAGLMALLAE 300

Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380
           +      ++    QG +R  +EQA  NA  +  + L+   +         +   L     
Sbjct: 301 QANARPARVLTRPQGVRRAWLEQAAKNADMALARALTESGARAARTLALAEALDLDTDEA 360

Query: 381 -----RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435
                RIE +D SH  G +     VV   +     QYR++N+    +   DD A MR VL
Sbjct: 361 ALDALRIECFDISHTAGEATQASCVVFLHHDMQPAQYRRYNI--AGITPGDDYAAMRQVL 418

Query: 436 ERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495
            RRF ++   E                 P +V++DGGKGQ+  A+ V  +L ++ + T++
Sbjct: 419 TRRFGKVADGE--------------APMPGLVLIDGGKGQVEVARQVFAELGLDIQ-TLV 463

Query: 496 SIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554
            +AKG  R  G+E      G   + L      L  I ++RDEAHRFAIT  R RR KA  
Sbjct: 464 GVAKGEGRKVGLETLVFADGRPPVALGGESAALMLIAQVRDEAHRFAITGMRARRAKARN 523

Query: 555 -SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            S L+EI G+G  R++ LL  FG    ++ +S E LAS++GIS  +A +IY+  H 
Sbjct: 524 VSRLEEIEGVGARRRQRLLARFGGFSGVASASIEDLASVDGISHDLAERIYDALHN 579


>gi|160871757|ref|ZP_02061889.1| excinuclease ABC, C subunit [Rickettsiella grylli]
 gi|159120556|gb|EDP45894.1| excinuclease ABC, C subunit [Rickettsiella grylli]
          Length = 608

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/611 (38%), Positives = 342/611 (55%), Gaps = 26/611 (4%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           + + PGVY  L+  G+VLYVGKA +L+KRI SY  +     RI  ++ Q+  I  T T T
Sbjct: 15  ISQSPGVYLFLNAEGQVLYVGKARHLKKRIGSYFRA-QQNRRIACLMRQVVTIETTSTET 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E +ALLLE+N+IK LKPR+NILLRDDKS+PYI+++   + P L  +R S   +  YFGPF
Sbjct: 74  ENQALLLESNLIKELKPRYNILLRDDKSYPYIILSRHQRYPRLAFYRGSRCKEYRYFGPF 133

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            S+ AV +T+N LQ+ F LRSC DS FR+RTRPCL +QIKRCS PC   I+ E Y   V+
Sbjct: 134 PSIAAVRETLNLLQKLFRLRSCKDSFFRNRTRPCLQYQIKRCSAPCVSFITPEHYQRDVN 193

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF 245
            A+ FL G N  + + +A+ M  A    DYE+A   RD+++AL  IQ        + D  
Sbjct: 194 NARLFLQGKNQTIIDDMAQQMECAARAFDYETAARLRDQISALREIQQKQVITTGQGDLD 253

Query: 246 SLYHNKNLACI--QTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----C 299
            +   +  A           G+  G  T+F +   +     +LS F+ QFY         
Sbjct: 254 IIGLAEQNAVYGLYVMNVRHGRLLGGKTYFPEVPFKQAADDVLSAFISQFYLQSEVSHFI 313

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  I+L+ +  E   +  +  ++ GYK+++     GEK++    A  NA ++  + LS +
Sbjct: 314 PPQIILALKIAENDWVSAALSERAGYKIRLFSRPTGEKKQWQTLADKNAQQALVRHLSNK 373

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
           ++    L+       L ++P+R+E +D SH  G + V   VV  + G  K  YR+FN+  
Sbjct: 374 LAFYKQLEYLQTALQLDNLPQRLECFDVSHTQGDATVASCVVFDQEGPRKMDYRRFNI-- 431

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            ++   DD A +R  L RR+ +L  +EE L              PD++++DGGKGQL  A
Sbjct: 432 ENITPGDDYAALRQALMRRYKRLKNDEEKL--------------PDLLLIDGGKGQLKQA 477

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAH 538
           + VL++L + N I +I +AKGP R AG+E+ ++    +A+ L      L  +  LRDEAH
Sbjct: 478 EQVLEELQI-NGILVIGVAKGPGRRAGLERLYLSDHLQAIHLPEDSFALRALLTLRDEAH 536

Query: 539 RFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HR  R KK   S L++I GIG  R+R LL+ FG +  +  +S E LA + GISK
Sbjct: 537 RFAIIGHRGLRSKKQRSSILEDIPGIGAKRRRELLRQFGGLHALKNASAEDLAKVPGISK 596

Query: 598 KIACKIYNHFH 608
           ++A +IY    
Sbjct: 597 RLAEQIYFALK 607


>gi|52424992|ref|YP_088129.1| excinuclease ABC subunit C [Mannheimia succiniciproducens MBEL55E]
 gi|81387223|sp|Q65U16|UVRC_MANSM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|52307044|gb|AAU37544.1| UvrC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 608

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 206/617 (33%), Positives = 332/617 (53%), Gaps = 32/617 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D    V+YVGKA +L+KR+ SY  +N  + +   +++ I  I  T+T 
Sbjct: 10  NVTHDPGVYRMFDDKDTVIYVGKAKDLKKRLSSYFRANLSSKKTEALVASICRIETTITT 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +PR+N+LLRDDKS+PYIL+T K + P +  HR S  + G YFGP
Sbjct: 70  SETEALLLEHNYIKTFQPRYNVLLRDDKSYPYILLT-KERHPRITSHRGSKKVTGEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           +    AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RC  PC    +S E+Y + 
Sbjct: 129 YPHAGAVRETLSLLQKLFPIRQCENSVYANRSRPCLQYQIGRCLAPCVSGYVSDEEYNQQ 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           V  A+ FL G +  + + +   M +A+   ++E A  +RD++ A+  +           +
Sbjct: 189 VGYARLFLQGKDQQVLDHLIGKMERASRALNFEEAARYRDQIQAVRSVIEKQFVSNERLD 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
            MD  ++ +   +AC+   F   G+  G  ++F K    ++ +++   F+ QFY      
Sbjct: 249 DMDIIAIAYKLGIACVHVLFIRQGKILGNRSYFPKVPENTSLSELTETFVGQFYLQAHQG 308

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P +I++  + EE + LE     Q G KV I    +G K K +  A +NA  +   +L
Sbjct: 309 RTIPNSIIVDRKLEEKAELESLLTDQAGRKVSIQDNIKGNKSKYLHLAQMNAQAALALQL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                     K+  +   +     R+E +D SH MG   +   VV  E G +K+ YR+FN
Sbjct: 369 KQSSLIHERYKELQQLLGIE-KIHRMECFDISHTMGQQTIASCVVFNEEGPLKSDYRRFN 427

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M   L++R+ + ++ E+                PD++ +DGGKGQL
Sbjct: 428 IEG--ITGGDDYAAMEQALKKRYDKDLELEK---------------IPDIIFIDGGKGQL 470

Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQR 532
           + A  V  +L V   +NR  +I +AKG  R  G+E   + K E  + L      L+ IQ 
Sbjct: 471 NRALKVFHELQVKWDKNRPHLIGVAKGVDRKVGLETLIISKQEREINLPADSLALHLIQH 530

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G ++ +  ++ + +AS
Sbjct: 531 IRDESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGMQGVKNATQDEIAS 590

Query: 592 IEGISKKIACKIYNHFH 608
           + GIS  +A KI+   H
Sbjct: 591 VPGISVALAEKIFEALH 607


>gi|315655489|ref|ZP_07908388.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333]
 gi|315490144|gb|EFU79770.1| UvrABC system protein C [Mobiluncus curtisii ATCC 51333]
          Length = 693

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 185/690 (26%), Positives = 308/690 (44%), Gaps = 85/690 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + ++P  PGVY+  D   RV+YVGKA NL+ R+ SY         R   M++   ++ +
Sbjct: 8   KASEIPTQPGVYRWRDERNRVIYVGKAKNLRNRLTSYFVDPARLHPRTAKMVATAASVSW 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +EVEAL LE   IK   P+FN++ +DDKS+PY  +T   + P +   R +      
Sbjct: 68  VVVGSEVEALTLEYTWIKEHDPKFNVMFKDDKSYPYFAVTMNQEYPRMGVLRTAHQRGVR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+ +V A+ +T++ LQ  F +R+C+D VF       R CLL  I RC+ PC G +S+
Sbjct: 128 YFGPYTAVWAIRQTLDLLQTVFPVRTCSDGVFARAQAANRACLLGYIGRCAAPCIGRVSA 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            ++ E   +   F+SG +     +I   M +      +E A   RD+L AL  +   N +
Sbjct: 188 AQHRELAEKVCDFMSGRDAGFLREIETAMWEDAQAYRFEEAARKRDQLEALRKVLEKNAA 247

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D F+L  ++    +Q  +   G+ RG   +    + +     +++  L Q Y
Sbjct: 248 VLSDDTDADLFALEADELQVSVQVFYVRAGRIRGQRGWVSAREEDLDEPSLMARALEQIY 307

Query: 295 TDKP------------------------------CPENILLSEEAEETSLLEISFFKQYG 324
            +                                 P+ IL+S    +  +L+       G
Sbjct: 308 GEAAADFVREGGVARLRRVGPSSANDTAHFDTSVIPKEILVSVSPADVGMLQRWLGALRG 367

Query: 325 YKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380
            +V I VP++G KR+ + +  +NA        T++        + L +  +   +     
Sbjct: 368 SQVSIRVPQRGAKREALSRVQLNAVEGLRLYKTRRARDLTQRNLALNELGRLLEIDPPL- 426

Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRF 439
           RIE YD SH  G   +G MVV  +    K+ YRKF++   D     DD   M  VL RRF
Sbjct: 427 RIECYDISHTQGTFQMGSMVVFEDGAPRKDAYRKFSIRGEDGTGTPDDTTAMNEVLRRRF 486

Query: 440 SQLIKNEE-----------------------------------NLNFHPKKQEYSFPSWP 464
            +LI+ E                                          +++   F   P
Sbjct: 487 ERLIQEENGQSSAQSEPNAATTARGTDLVENKNPFPQTTHSVAPPPLGTEREPRRFSYRP 546

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D+V++DG   Q+ AA+  + ++ V + I ++ +AK  +     E + V     ++     
Sbjct: 547 DLVVVDGALPQVHAARAAMDEVGVWD-IPVVGLAKRLE-----EVWRVDDDFPVIFPRTS 600

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             LY +Q LRDE+HRFAI+ HR++R +    S LD   G+GP +++ LL+ FG+VK +  
Sbjct: 601 EALYLLQYLRDESHRFAISAHRQKRARAMTRSILDAAPGVGPAKQKALLKHFGSVKRLRE 660

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +S   +A + G   K A  +    + + + 
Sbjct: 661 ASAAEIAEVPGFGLKTAENLVAFLNNSGNS 690


>gi|304389347|ref|ZP_07371312.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327465|gb|EFL94698.1| excision endonuclease subunit UvrC [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 693

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 186/690 (26%), Positives = 308/690 (44%), Gaps = 85/690 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + ++P  PGVY+  D   RV+YVGKA NL+ R+ SY         R   M++   ++ +
Sbjct: 8   KASEIPTQPGVYRWRDERNRVIYVGKAKNLRNRLTSYFVDPARLHPRTAKMVATAASVSW 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +EVEAL LE   IK   P+FN++ +DDKS+PY  +T   + P +   R +      
Sbjct: 68  VVVGSEVEALTLEYTWIKEHDPKFNVMFKDDKSYPYFAVTMNQEYPRMGVLRTAHQRGVR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+ +V A+ +T++ LQ  F +R+C+D VF       R CLL  I RC+ PC G +S+
Sbjct: 128 YFGPYTAVWAIRQTLDLLQTVFPVRTCSDGVFARAQAANRACLLGYIGRCAAPCIGRVSA 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            ++ E   +   F+SG +     +I   M +      +E A   RD+L AL  +   N +
Sbjct: 188 AQHRELAEKVCDFMSGRDAGFLREIETAMWEDAQAYRFEEAARKRDQLEALRKVLEKNAA 247

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D F+L  ++    +Q  +   G+ RG   +    + +     +++  L Q Y
Sbjct: 248 VLSDDTDADLFALEADELQVSVQVFYVRAGRIRGQRGWVSAREEDLDEPSLMARALEQIY 307

Query: 295 TDKP------------------------------CPENILLSEEAEETSLLEISFFKQYG 324
            +                                 P+ IL+S    +  +L+       G
Sbjct: 308 GEAAADFAHEGGVARPRRVGPSSANDTAHFDTSVIPKEILVSVSPADVGMLQRWLGALRG 367

Query: 325 YKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380
            +V I VP++G KR+ + +  +NA        T++        + L +  +   +     
Sbjct: 368 SQVSIRVPQRGAKREALSRVQLNAVEGLRLYKTRRARDLTQRNLALNELGRLLEIDPPL- 426

Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRF 439
           RIE YD SH  G   +G MVV  +    K+ YRKF++   D     DD   M  VL RRF
Sbjct: 427 RIECYDISHTQGTFQMGSMVVFEDGAPRKDAYRKFSIRGEDGTGTPDDTTAMNEVLRRRF 486

Query: 440 SQLIKNEEN-----------------------------------LNFHPKKQEYSFPSWP 464
            +LI+ E                                          +++   F   P
Sbjct: 487 ERLIQEENGQSSAQSEPNAATTARGTDLVETKHPSPQTTPSVALPPLGTEREPRRFSYRP 546

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D+V++DG   Q+ AA+  + ++ V + I +I +AK  +     E + V     ++     
Sbjct: 547 DLVVVDGALPQVHAARAAMDEVGVWD-IPVIGLAKRLE-----EVWRVDDDFPVIFPRTS 600

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             LY +Q LRDE+HRFAI+ HR++R +    S LD   G+GP +++ LL+ FG+VK +  
Sbjct: 601 EALYLLQYLRDESHRFAISAHRQKRARAMTRSILDAAPGVGPAKQKALLRHFGSVKRLRE 660

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +S   +A + G   K A  +    + + + 
Sbjct: 661 ASAAEIAEVPGFGLKTAENLVAFLNNSGNS 690


>gi|260434379|ref|ZP_05788349.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109]
 gi|260412253|gb|EEX05549.1| excinuclease ABC, C subunit [Synechococcus sp. WH 8109]
          Length = 661

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 192/633 (30%), Positives = 304/633 (48%), Gaps = 29/633 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            +++P  PG Y M D   R+LYVGK+  L+ R++SY  S++  + RI  M  Q+  I F 
Sbjct: 20  LKEIPAEPGCYLMRDGDDRILYVGKSKALRSRVRSYFRSHHDLSPRIRLMTRQVCEIEFI 79

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT +E EAL+LE+N+IK L+P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 80  VTDSEAEALVLESNLIKNLQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 139

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R F LR     ++  RT  CL F I RC G C  +ISSE 
Sbjct: 140 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPMYPDRT--CLNFSIGRCPGVCQEKISSED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   + +      G +  L++ +   M +   + DYESA   RD+L  L  +        
Sbjct: 198 YHRTLRKVAMVFQGRSDELQQLLQEQMERYAERMDYESAARVRDQLQGLDQLTADQKMSL 257

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  ++ LA +Q      G+  G   +     S      IL   + + Y+
Sbjct: 258 PDSSVSRDVLALAFDERLAAVQLFQMRAGKLVGRLGYTAD-ASGLEPGLILQRVIEEHYS 316

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+     +  L+E    +Q   +V+I  P++ +K  +IE    NA    
Sbjct: 317 QVDSVEVPPKLLVQHALPQQKLMEDWLSEQRERRVQIHCPQRQQKADLIELVQRNAEFEL 376

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +    +    +  +D  +   LP  P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 377 LRAKQGQEKQSLATEDLAQLLELPTPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 436

Query: 413 RKFNLHPNDV---KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-------QEYSFPS 462
           RK+ +  + +    + D  AM  ++  R         E L+    +       Q      
Sbjct: 437 RKYKIRSSSIQAGHSDDFMAMAEIMRRRFRRWARAKAEGLDVGALRHKGGSALQTDGLND 496

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPDVV++DGGKGQLSA    L++L++   + + S+AK  +     E F   + + L    
Sbjct: 497 WPDVVMIDGGKGQLSAVMEALRELDLHEDLNVCSLAKQRE-----EVFLPGESQPLESEP 551

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA++ HR++R  +   S L +I G+GP R + LL  F ++  I
Sbjct: 552 DQLGVVLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGVGPKRVKDLLAHFHSIDAI 611

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             +S ETL+   G+   +A  I++ FH +   T
Sbjct: 612 QLASVETLSKAPGVGPALARDIHDFFHPSDDGT 644


>gi|42523762|ref|NP_969142.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100]
 gi|81617029|sp|Q6MKS2|UVRC_BDEBA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|39575969|emb|CAE80135.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100]
          Length = 630

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 200/628 (31%), Positives = 314/628 (50%), Gaps = 41/628 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             ++ P   GVY M + A +++Y+GKA NL+ R++SY + S +H+ +   ++S I  + +
Sbjct: 12  KVKEFPTQSGVYLMKNTADKIIYIGKAKNLRNRVRSYFNDSKDHSPKTRLLVSNICEVEY 71

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T TEVEA LLEA++IK+ +P++NI LRDDK++PYI  +   + P LY  R        
Sbjct: 72  ILTKTEVEAFLLEASLIKKHRPKYNIRLRDDKAYPYIRFSWGDQAPRLYLARKVKKDGSL 131

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ S  AV  TI  L RTF +R C D+VF+ RTRPC+ +QI RC+ PC   I+ E Y
Sbjct: 132 YFGPYTSGLAVHGTIKFLNRTFKIRDCTDAVFKSRTRPCMTYQIGRCTAPCVKYITMEDY 191

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V  AK FL G N  + + +   M  A  +E +E A   RD + A+  I      I +
Sbjct: 192 RNEVEGAKLFLKGQNKKVIKSMTEKMMGAADEEKFEVAARLRDSIEAIKAILQKQAVIND 251

Query: 241 ----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT----DSESTNAQILSYFLRQ 292
                 D    Y ++    I+T     G+  GT   +L      D+     + L  FL Q
Sbjct: 252 TSEKDQDALGYYGDERGCLIETVHIRAGRVIGTRPHYLPHFDPNDAVEDPREWLVDFLNQ 311

Query: 293 FYTDKPCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           +Y D   P+ +LL  +   + T L+E    ++ G K  +        R +++ A  NA  
Sbjct: 312 YYEDNFIPDEVLLPLDIGNDLTKLMEEVLKERSGSKTTVRFATDERGRNLVDMAHENAKS 371

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              + +S        L++  ++F LP  P+RIE YD S   G   V   VV  +    K 
Sbjct: 372 HFLKYVSKSEEKLRGLEEIKERFNLPERPRRIECYDISTFQGAETVASQVVFEDGVPAKE 431

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR++ +    V+  +D A M  VL RRF     ++                 P ++++D
Sbjct: 432 HYRRYKIKT--VQGINDFASMYEVLSRRFKHTEYDD-----------------PQLIVID 472

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAK--------GPKRSAGMEKFF-VKKGEALVLN 521
           GGKGQLS A  +L+++     I ++ +AK          +  +  E+FF   +   ++  
Sbjct: 473 GGKGQLSQAMKILEEIG-RKDIPVVGLAKARTESDFQKQEVESTEERFFLPGRSNPVIFK 531

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
                LY +  +RDEAHRFAIT HRK R   +  S LD + G+G  RK++LL  F ++  
Sbjct: 532 HNAEALYILSGIRDEAHRFAITYHRKLREGTSLESELDYVVGLGEKRKKVLLTQFNSIDE 591

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFH 608
           I  + PE +A ++G ++ +A +I    +
Sbjct: 592 IKMADPEEIAKLKGFNRVLAERILLQLN 619


>gi|197120322|ref|YP_002140749.1| excinuclease ABC subunit C [Geobacter bemidjiensis Bem]
 gi|226698351|sp|B5EG40|UVRC_GEOBB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|197089682|gb|ACH40953.1| excinuclease ABC, C subunit [Geobacter bemidjiensis Bem]
          Length = 623

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/621 (33%), Positives = 307/621 (49%), Gaps = 35/621 (5%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTV 62
           E  P  PGVY M      V+YVGKA NL+KR++SY      +   I  M+  ++++ + V
Sbjct: 8   ENFPPSPGVYLMKSADDTVIYVGKARNLKKRVRSYAGDTRDSRIHIRFMVQLVHSVDYLV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE  +IK+ +P++NI LRDDK++  + +  K + P L   R   +    YF
Sbjct: 68  TDTEKEALILENTLIKQHRPKYNINLRDDKTYFSLRMDMKEQFPRLSIVRKIPSDGARYF 127

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+AS  A ++ +  L + F LR    +    R RPCL  QIK+CS PC G IS+ +Y  
Sbjct: 128 GPYASATAAKEVLKQLYKMFPLRHYPLATCMARKRPCLYHQIKQCSAPCCGLISAAEYAA 187

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD--RLAALSHIQNHNDSIYN 240
             H A  FL G N  +       MN A  +  YE A  +RD  R   ++  +    +  +
Sbjct: 188 LAHGAALFLEGKNTEVARLYRSKMNLAAEQMRYEDAARYRDLLRAIEVTVERQKMVAQSD 247

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPC 299
             D F L+   +   I       G   G  +F    + E+   + L+ FL ++Y  D P 
Sbjct: 248 DSDVFGLHREADRMQIALLHIRGGTLTGGRSFLFDWELETE--EGLASFLNEYYDLDAPI 305

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  +L+     E + LE    ++ G KV I VP++G K ++++ A  NA  +  ++L+ E
Sbjct: 306 PPQVLIPVPIAEPAALEELLSEKAGKKVTIAVPQRGPKLEMVKLAGKNAETAAQERLARE 365

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            S   +L +  +K  LPH P+RIE YD S+I G  AVG  VV  +    K+ YR++ +  
Sbjct: 366 SSSATLLTELAEKLNLPHPPRRIECYDISNIQGEMAVGSRVVFIDGRADKSLYRRYRIKG 425

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V   DD AMMR VL RRF      E+                PD++++DGG GQL   
Sbjct: 426 --VLQSDDFAMMREVLSRRFKAESSEEK----------------PDLIVVDGGLGQLGVL 467

Query: 480 QGVLKKLNVENRITIISIAK-GPKRSAGMEK--------FFVKKGEALVLNMRDPILYFI 530
             VL +L V   +    +AK    R    E+        F   +  A+ L      L  +
Sbjct: 468 NAVLDELEVTG-VEAAGLAKSRVARDMESEEIERSDERVFRPGRKNAIALRQSSAPLLLL 526

Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R+RDEAHRFA+T H+  R K    S LD + GIG  RK+ LL+ FG++K +  ++ E L
Sbjct: 527 VRIRDEAHRFAVTYHKDVRSKVLTGSELDGVAGIGEKRKKALLKHFGSLKRVKEATLEEL 586

Query: 590 ASIEGISKKIACKIYNHFHKN 610
               G+++  A  +    H +
Sbjct: 587 KGAPGMTESAAKALVERLHGS 607


>gi|294507592|ref|YP_003571650.1| UvrABC system protein C [Salinibacter ruber M8]
 gi|294343920|emb|CBH24698.1| UvrABC system protein C [Salinibacter ruber M8]
          Length = 664

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 187/637 (29%), Positives = 311/637 (48%), Gaps = 45/637 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
             + +P  PGVY+ LD    VLYVGKA NL+ R+++Y  S+     RI  M+ +  ++  
Sbjct: 46  KLDALPTDPGVYKFLDDEESVLYVGKAKNLRNRVRTYFQSSRQRDGRIEVMVQKAVDVDI 105

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE EAL+LE N IK L+PR+N+ LRDDK++PYI I    + P ++K R        
Sbjct: 106 IVTDTEAEALILENNQIKELQPRYNVNLRDDKTYPYICI-KNERFPRVFKTRTVKQDGSE 164

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+A V  +   +++++  F LR+C+     + +   +   CL   I  C  PC G+ 
Sbjct: 165 YFGPYADVSKMNAMMDAIRSVFQLRTCSLDLTEEKIEAGKYDVCLQHHIDNCKAPCVGKQ 224

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S   YME + + KK L+G    L + +   M + +   ++E A   RD++ AL       
Sbjct: 225 SEADYMETIEQVKKLLNGQTQELMDLLKDEMQRQSDAHNFEEAARLRDQVKALKDYSQQQ 284

Query: 236 DS---IYNRMDCFSLY--HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                 +   D F+L+   ++++ C        G+  G    FL++ +E ++A+++   +
Sbjct: 285 KVVSQDFADRDVFALHVERDEDIGCGVLFQVREGKMIGKRHKFLRSVAERSDAELILSLV 344

Query: 291 RQFYTDKPC-PENILLSEEAEETSLLEISFFK-----QYGYKVKITVPKQGEKRKIIEQA 344
             +Y +    PE +LLS +  +    +    +     + G++V I VP++GEK  ++  A
Sbjct: 345 ENYYAEANFYPEEVLLSHDPNDHPAQDTHALEELLRREQGHQVPIKVPQRGEKASLVRMA 404

Query: 345 LINAHRSHTQKLSTEISHQM-----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
             NA     +  + ++  +       +K   +   +   P+R++  D SH  G   V   
Sbjct: 405 TSNAKLQVGEWKTQQMKRERNRIPESIKALGEALNMEAAPRRVDGIDVSHHGGKETVASC 464

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           VV  +    K+ YR + +   +  T DD   MR              E +    ++    
Sbjct: 465 VVFTDATPRKSDYRTYKIRSTEEGTPDDYQAMR--------------EVVRRRYRRMVEE 510

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519
              WPD+V++DGGKGQLS+A  +LK++   +R  +I +AK  +     E +     E + 
Sbjct: 511 DGPWPDLVVIDGGKGQLSSAVEMLKEVGAFDRFPVIGLAKRLE-----EVYRPGDSEPVF 565

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTV 578
           L    P L  +Q++RDEAHRFA+T  RKRR KK   S L +I+GIGP   + LL  FG+ 
Sbjct: 566 LAKDSPALQLLQKVRDEAHRFAVTYQRKRRKKKTLQSELLDIHGIGPKTAKKLLGEFGSA 625

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
             +  +  E LA + G     A  I +++ +  +  P
Sbjct: 626 AKVKEADEEALAEVVG--PAKAETITDYYDETEAPAP 660


>gi|322384564|ref|ZP_08058244.1| excinuclease ABC subunit C-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150619|gb|EFX44096.1| excinuclease ABC subunit C-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 659

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/664 (27%), Positives = 300/664 (45%), Gaps = 83/664 (12%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +  G ++YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 24  LPDQPGCYLMKNKDGVIIYVGKAKVLKNRVRSYFTGS-HDGKTQRLVSEIRDFEYIVTSS 82

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+ +PR+N+LL+DDKSFPYI IT   + P L   R     +G YFGP+
Sbjct: 83  NIEALILECNLIKKHRPRYNVLLKDDKSFPYIKIT-HEEHPRLEVTRKIVKDRGKYFGPY 141

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++T   L R + LR C         R CL + + +C  PC  +++ E+  E + 
Sbjct: 142 PNAYAAQETKKLLDRLYPLRKCKHMP----DRVCLYYHMGQCLAPCVYDVTKEQNEEMIQ 197

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
              +FL+GG+  +K  +   M+ A  + ++E A   RD++A +  +              
Sbjct: 198 GITRFLNGGHEEIKRDLTAKMHAAAEELNFERAKELRDQIAYIEAVMEKQKITMADHVDR 257

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC--- 299
           D F    +K   C+Q  +   G+             +    +    ++ Q Y+D P    
Sbjct: 258 DVFGYSTDKGWMCVQILYMRQGKLIERHVSMFPFYGDE--YEDFITYVTQAYSDNPALPK 315

Query: 300 -----------------------------------------PENILLSEEAEETSLLEIS 318
                                                    P          +     + 
Sbjct: 316 EIFLPLRNKAGEQKAGESHEISGKDSFIEALQKEDEFQKEHPREQEGPVLPSDAEEGMVK 375

Query: 319 FFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMILKDFTKKFA 374
              +    V++  P++G K++++E A  NA              E      +++  +   
Sbjct: 376 EALESWLGVRVHFPQRGLKKQMVEMAANNARVALEEKFRLIERDEKRTIKAVENLGEWIG 435

Query: 375 LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMV 434
                +RIE +DNS+I G   V  MVV  +    + +YRKF +    V+  DD + MR V
Sbjct: 436 -TGYVRRIEAFDNSNIQGADPVAAMVVFIDGKPERKEYRKFKIKT--VQGPDDYSSMREV 492

Query: 435 LERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRIT 493
           + RR+ +++K+                  PD++I+DGGKGQ+SAA  +L+ +L +   I 
Sbjct: 493 IRRRYERVLKDG--------------LEMPDLIIVDGGKGQISAAIDILENELGLY--IP 536

Query: 494 IISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA 553
           +  ++K  K             E + +       Y + R++DE HRFAIT HR+RR K+ 
Sbjct: 537 VCGLSKDIKHKTAQ-LLMGDPAEVVPIPRDSQEFYLLNRIQDEVHRFAITFHRERRAKSM 595

Query: 554 -YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             S LD I GIG  R++LLL+ FG+VK I  +  E    I GI  K+A +I    + N  
Sbjct: 596 VQSQLDAIPGIGEKRRKLLLKHFGSVKKIKEAKVEDFRPI-GIGDKLAAQILTSLNGNM- 653

Query: 613 HTPT 616
            TPT
Sbjct: 654 DTPT 657


>gi|228477681|ref|ZP_04062310.1| excinuclease ABC subunit C [Streptococcus salivarius SK126]
 gi|228250570|gb|EEK09781.1| excinuclease ABC subunit C [Streptococcus salivarius SK126]
          Length = 594

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 174/617 (28%), Positives = 297/617 (48%), Gaps = 39/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPNNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+   P+FNI L+DDKS+P+I IT K   P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIQENMPKFNIRLKDDKSYPFIKIT-KELYPRLLITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + I +C+       + + + 
Sbjct: 126 FGPYPDSGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCNAHTICHTTEDYWQ 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238
             V + K FL+G +  +  ++   M   + + ++E A  +RD + A+S ++         
Sbjct: 182 GLVEDVKNFLNGHDDKIVNQLKAKMKDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +         +   
Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYMGQFYLDSRHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  I +  + ++ S+  +   +     VK+  P++GEK++++  A  NA     +    
Sbjct: 302 KPREIFIPGDIDQDSVEALVGDE-----VKVFKPQRGEKKQLVNLATKNARVSLTQKFDL 356

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   Q  +++  K   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 357 LEKDLAKTQGAIENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V+  DD A MR V+ RR+S++ ++                + PD++I+DGG+G
Sbjct: 416 YKIKT--VEGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIMDGGQG 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ VL+K  +   I +  + K  K     E  F      + L  +    + + R++
Sbjct: 460 QVNVAKDVLRK-ELNLSIPVAGLQKNDKHQT-NELLFGDPLRVIDLPRQSEEFFLLHRIQ 517

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD + G+GP RK+ LL+ F ++  I ++S E + ++ 
Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKHFKSMTAIQKASAEDIQAL- 576

Query: 594 GISKKIACKIYNHFHKN 610
           GI +K+A  + +  + N
Sbjct: 577 GIPEKVAEALLDKLNDN 593


>gi|325954157|ref|YP_004237817.1| UvrABC system protein C [Weeksella virosa DSM 16922]
 gi|323436775|gb|ADX67239.1| UvrABC system protein C [Weeksella virosa DSM 16922]
          Length = 603

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 190/627 (30%), Positives = 306/627 (48%), Gaps = 49/627 (7%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +PE PGVYQ  +  G +LYVGKA NL+KR+ SY +  + + RI  ++ +I+ I  
Sbjct: 7   IQLSALPETPGVYQYYNKKGNLLYVGKAKNLKKRVNSYFNKTHDSGRIRLLVKKIDRIET 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
               TE +ALLLE  +IK+ KPR+NI+LRDDK++P+I I  K   P +   R        
Sbjct: 67  INVATEYDALLLENTLIKKNKPRYNIMLRDDKTYPWICI-KKEPFPRIISTRKLVKDGSE 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP++S+  +   +  ++  +F+R+C+     D++ + + + CL + I RC GPC G  
Sbjct: 126 YFGPYSSIRVMRTLLELIRELYFIRTCSYDLSEDNIEKGKYKVCLEYHIDRCKGPCEGLQ 185

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           +   Y   +   +  + G     K  +   M +      +E A   +++L ALS  Q  +
Sbjct: 186 TEADYDMQIQAIRNIIRGDYAEGKRYLTDLMEKFAADLQFEQAQNIKEKLEALSSYQTKS 245

Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
             ++    R+D FS+  + + A I     H G    + T   K   E T+ ++L+  + +
Sbjct: 246 TVVHPSITRVDVFSIISDADYAYINFLRIHNGAIIQSHTEEWKKKLEETDEELLTTAIIE 305

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
           F              + +   +            VKITVPK G+K+ I++ +  NA    
Sbjct: 306 FGER----------FDLQSKEIYVPFALDLEIPNVKITVPKIGDKKHIVDLSERNAKLYR 355

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            ++L        +     I+K       L   P+ IE +DNS+I G + V   VV  +  
Sbjct: 356 LEQLKRTKLVDPDRHTNRIMKQMKVDLRLLREPRHIEGFDNSNIQGTNPVSACVVFRDGK 415

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR FN+    V   +D A M  V+ RR+S+L+   E L              PD+
Sbjct: 416 PSKKDYRIFNVET--VDGPNDFATMEEVIYRRYSRLLNEGEAL--------------PDL 459

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGGKGQLS+A   + +L +  ++++I IAK  +     E F+      L L+     
Sbjct: 460 ILIDGGKGQLSSALKSIDRLGLRGKVSVIGIAKRLE-----EIFYPNDPYPLYLDKTSET 514

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  +Q++RDEAHRF ++ HR RR K+A  + LDEI GIG      LL++FG+V+ I  +S
Sbjct: 515 LKILQQVRDEAHRFGVSRHRNRRSKSAFKTELDEIPGIGKKTIEKLLRNFGSVERIKSAS 574

Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612
              L  +  I +  A  I N+F     
Sbjct: 575 LANLEEV--IGQSKAIIIKNYFSNEED 599


>gi|308273880|emb|CBX30480.1| UvrABC system protein C [uncultured Desulfobacterium sp.]
          Length = 614

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 204/617 (33%), Positives = 327/617 (52%), Gaps = 28/617 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH------RITHMISQINNIRFT 61
             PGVY M D  G ++YVGKA NL+KR+ SY  S+          +   +I +I +    
Sbjct: 14  SSPGVYLMKDAGGEIIYVGKALNLKKRLSSYFISSESNTQQQMNLKTGVLIKKIVSFETI 73

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T TE EAL+LE+N+IK+ KPR+N++L+DDK +P + +  K K P L   R     +  Y
Sbjct: 74  ITGTEKEALILESNLIKKYKPRYNVILKDDKRYPSLRLDIKSKYPNLKVIRIPKNDKAMY 133

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF+S  AV +T+  + +TF LR C    FR RTRPCL +Q+  C GPC  EI    Y 
Sbjct: 134 FGPFSSAGAVRQTLKLIHKTFKLRKCTTGAFRKRTRPCLNYQMGMCFGPCCNEIDQSMYE 193

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSI 238
           E V E   FL G    L ++I   M +A+  +DYE A  +RD++ ++           + 
Sbjct: 194 EAVKEVILFLKGRTPALIKEIKDKMQKASQAQDYELAAAYRDKMYSIRQTLEKQVAVTAD 253

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           +   D F++  +   + I       G  +GT  F  K    S +  +  +  + +     
Sbjct: 254 FMDKDVFAVIGDNEHSVITLLTVRSGYLQGTRHFGFKATISSDSEMLGGFIRQYYEKTNI 313

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  +++S   E+T L+E       G KV+I  PK+GE+ ++++ A+ NA     + +S+
Sbjct: 314 IPHEVIVSTAMEDTPLIEEWLTDIKGEKVRIYEPKKGERFELVKMAIQNAENELNEIISS 373

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             S   +L    K+  +  +P RIE +DNS+I G + V  MVV       K+ YRK+++ 
Sbjct: 374 ITSSTDLLSRLQKRLGMDRMPVRIECFDNSNISGKNPVSAMVVFENAKPAKSLYRKYSIK 433

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   +D A M   L RRF ++ K +E              ++PD++++DGGKG ++ 
Sbjct: 434 T--VPEHNDYAYMAEALTRRF-RINKEKE-------------ITYPDLLMIDGGKGHINI 477

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGME--KFFVKKGEALVLNMRDPILYFIQRLRDE 536
              +L ++N+  +  +I IAK  +    +E   +   +   +       +L+F++R+RDE
Sbjct: 478 VYNILNEMNLTGKFELIGIAKKDEARGELEDKIYQPGRSNPVNFTRERDLLFFLERIRDE 537

Query: 537 AHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            HRFAI+ HRK+ RKK+ +S LD++NGIG  +K +LL+ FG++K I  ++PE L+S+ GI
Sbjct: 538 THRFAISFHRKQIRKKSIHSALDDVNGIGKKKKEMLLKHFGSIKKIRAATPEELSSLPGI 597

Query: 596 SKKIACKIYNHFHKNTS 612
           + +IA  I        S
Sbjct: 598 TVEIANAIKEVLKIEES 614


>gi|145219356|ref|YP_001130065.1| excinuclease ABC subunit C [Prosthecochloris vibrioformis DSM 265]
 gi|145205520|gb|ABP36563.1| Excinuclease ABC subunit C [Chlorobium phaeovibrioides DSM 265]
          Length = 636

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 294/631 (46%), Gaps = 51/631 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +P+ PGVYQ  +  GRV+YVGKA NL+ R++SY  +    + +   +++ I ++   +T
Sbjct: 32  SLPKEPGVYQFRNDKGRVIYVGKAKNLRSRVRSYFSNPLQQSGKTQVLVTHIRDLEIIIT 91

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL+LE N+IK LKPR+NI L+DDK++P+++IT     P ++  R+ +  +  +FG
Sbjct: 92  SSEVEALILENNLIKELKPRYNINLKDDKTYPWLVIT-AEPFPRIFITRNRTRDRSIWFG 150

Query: 124 PFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+     +   ++ +   F +RSC      +++   + + CL + I +C GPC G     
Sbjct: 151 PYTEAGQLRTILDLISSIFPVRSCRHPLTPENIASKKYKLCLDYHIHKCKGPCEGLQEEG 210

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y+E + E  + L G    L+  +   M  A     +E A   + +L +L         +
Sbjct: 211 DYLEMIGEIVRLLKGKTAGLRRDLHEKMLTAAEDLRFEEAAEIKLQLDSLKRYSERQKIV 270

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++   ++ AC        G+  G+  F L      + A IL   L   Y 
Sbjct: 271 AADGADRDAVAVAIGEDEACGVVFRIREGKMLGSQHFILTNTKGESEATILGRVLETHYL 330

Query: 296 DKP--CPENILLSEEAEETSL-------LEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
                 P+ +LL E  EE +         E         +++ TVP+ GEK  +++    
Sbjct: 331 KTADLMPDEVLLPELPEEEAAEALRALGREQQGEGGRQKEMRFTVPQIGEKAHLLDMCRQ 390

Query: 347 NAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
           NA     + +  +       ++        +   L + P RIE +DNSH+ G   V  MV
Sbjct: 391 NARHHLAEYMVQKQKRGEAAREHSGSKALAEALHLENTPNRIECFDNSHLQGTDYVSAMV 450

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460
                  +K  YRKF L  N  +  DD A M   + RR+   +  E              
Sbjct: 451 CFVMGRPLKGGYRKFKL--NSFEGSDDYAAMEEAINRRYGGSLSKE-------------- 494

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
              PD++I+DGGKGQ++ A+  L  L V   + +I +AK  +     E F     +   L
Sbjct: 495 LPLPDLIIVDGGKGQVNTARKALDALGVS--VPVIGLAKRLE-----EIFIPFTPDPFNL 547

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
               P L  +Q+LRDE+HRFAI+ HR  RRK+   + L  I GIG      LL+ FG+ +
Sbjct: 548 PKTSPALKLLQQLRDESHRFAISYHRTLRRKRTLQTELTAIEGIGEKTAFTLLERFGSAE 607

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKN 610
            ++ ++ E LA   G  K  A  ++NH+H  
Sbjct: 608 GVAAATLEELAKTAGTMK--AETVFNHYHSE 636


>gi|89098899|ref|ZP_01171779.1| excinuclease ABC subunit C [Bacillus sp. NRRL B-14911]
 gi|89086303|gb|EAR65424.1| excinuclease ABC subunit C [Bacillus sp. NRRL B-14911]
          Length = 590

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 178/613 (29%), Positives = 304/613 (49%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    V+YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQATVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVNEIEDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           ++EAL+LE N+IK+  P++N++L+DDKS+P+I +T   + P L   R+    +G YFGP+
Sbjct: 71  DMEALILEMNLIKKYDPKYNVMLKDDKSYPFIKLT-AERHPRLITTRNVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+        R CL + + +C  PC   +S ++Y + V 
Sbjct: 130 PNVQAANETKKLLDRIYPLRKCSTLP----DRVCLYYHMGQCLAPCVKPVSEKQYKDIVD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
           E  +FL+GG  ++K+++   M  A  + D+E A   RD++A +             +   
Sbjct: 186 EIARFLNGGYKDIKKELTVKMTAAAEELDFERAKELRDQIAHIEATMEKQKMTSTDFTDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+             E     +          +   P  
Sbjct: 246 DVFGFAVDKGWMCVQVFFIRQGKLIERDVSLFPVYGEPEEEMLTFMGQFYTKANHFKPRE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           IL+ +   E    ++   K          P++G+K+ +++ A  NA  +  +K       
Sbjct: 306 ILVPDTVNEEMAEKLLEVKVLK-------PQRGQKKDLVKLAGKNARIALQEKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  + + P RIE +DNS+I G   V  M+V  +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGRQLGI-YTPHRIEAFDNSNIQGTDPVSAMIVFIDGKPEKREYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR  + RR+++++K                   PD++I+DGGKG + +
Sbjct: 418 T--VKGPDDYESMREAVRRRYTRVLKEG--------------LPIPDLIIVDGGKGHIES 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            + VL+ +L ++  I I  +AK  K        +    E + L       Y +QR++DE 
Sbjct: 462 VRDVLENELGLD--IPISGLAKDEKHRTSQ-LLYGNPLEIIPLERNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K+A+ S LD+I GIG  RK+LLL++FG+VK +  +  +   +I GI 
Sbjct: 519 HRFAITFHRQLRGKSAFQSLLDDIPGIGEKRKKLLLKTFGSVKKMKEAGLDEFTAI-GIP 577

Query: 597 KKIACKIYNHFHK 609
             +A ++ N   +
Sbjct: 578 ANVAQELKNKLSE 590


>gi|91205429|ref|YP_537784.1| excinuclease ABC subunit C [Rickettsia bellii RML369-C]
 gi|119367829|sp|Q1RIW9|UVRC_RICBR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|91068973|gb|ABE04695.1| Excinuclease ABC subunit C [Rickettsia bellii RML369-C]
          Length = 635

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 236/642 (36%), Positives = 356/642 (55%), Gaps = 49/642 (7%)

Query: 1   MSSE--QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+   +PE  GVY+M D   +V+YVGKA NL+KR+ +Y    +   +   M++   ++
Sbjct: 11  IKSKLIDIPERSGVYRMFDANKQVIYVGKAKNLKKRLTNY-IKTDLDTKTLRMVANTCSL 69

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            +++T +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I +   H  P L K+R  +   
Sbjct: 70  EYSITNSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGRALND 129

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G +FGPFAS   V  T++ LQ+ F LRSC D+ F  RTRPCL ++IKRC  PC G+I+ +
Sbjct: 130 GKFFGPFASATEVNTTLSELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKK 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E V + K FL G +  L+E +++ M + + +  +E A   RDR+ ALS++Q      
Sbjct: 190 DYAELVGQVKDFLQGRSKELQENLSKKMEELSEQMRFEEAAEIRDRIKALSYVQLKAGIT 249

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++       C++   +  GQ  G   +F  +   ST  ++L +FL QFY  
Sbjct: 250 DIVKDADIIAIVEKNGHYCVEVFLYRIGQACGNIPYFPTSTENSTKEEVLKHFLLQFYQK 309

Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I+++ E ++   ++E         K+ IT+P  G K K+++ A  NA  S  Q 
Sbjct: 310 QQVPPGIIINHEIDDKDNIIEAIRNINDFAKLSITIPASGGKLKLVQNAQENALFSLEQY 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L     +Q ++ +  + F LP IP+RIE+YDNSHI G  AVG M+V G++GF K +YR F
Sbjct: 370 LKKFAKNQELMFEVKELFNLPEIPERIEVYDNSHIQGKFAVGVMIVAGKSGFDKKEYRVF 429

Query: 416 NL--------------------------HPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
           +L                           P      DD  M+R VL RR ++L +     
Sbjct: 430 SLSSRDSITGSSKSTNNDSISCFLDTVDKPRYDTKGDDYEMLRQVLTRRLTRLKQE---- 485

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                         P ++I+DGGKG L   + V+ KL ++  I  + ++KGP R+AG+E+
Sbjct: 486 ----------PHRLPSLMIIDGGKGHLGIVKEVMNKLQMD--IPFVCMSKGPDRNAGLEQ 533

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRK 568
           F +   E   LN   P++ ++Q LRDEAH FAI  HR  R +A   S LDEI GIG  RK
Sbjct: 534 FHMVGREVFTLNKNLPLMKYLQILRDEAHNFAIKNHRLSRSRAIKVSSLDEIEGIGDTRK 593

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           + LL  FG+ K +S ++ + L+ ++GISK +A  I+N  HKN
Sbjct: 594 KALLHYFGSYKAVSDATLDELSKVKGISKSLAKMIFNALHKN 635


>gi|297568830|ref|YP_003690174.1| excinuclease ABC, C subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296924745|gb|ADH85555.1| excinuclease ABC, C subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 610

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 199/615 (32%), Positives = 310/615 (50%), Gaps = 26/615 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTCTE 66
           + PGVY M D  G+VLYVGKA +L+KR++SY         + + M+ ++  +   +T TE
Sbjct: 12  DAPGVYLMRDAGGQVLYVGKAVSLRKRLQSYSRIDPAGRSKTSVMLGKVAKVDTVLTRTE 71

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EAL+LEA +IK+ +PR+N++LRDDKS+P++ +T + + P L   R  S     YFGP+A
Sbjct: 72  KEALILEAGLIKQHRPRYNVILRDDKSYPHLKVTVQEEWPRLLMTRRVSKDGARYFGPYA 131

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  A+ +T+  L   F LR C    F    R CL  Q+ RC  PC G I+ E Y + V +
Sbjct: 132 SPAAMWETLRLLNSLFPLRRCKAKKFAPGQRACLNHQMGRCPAPCIGAITPEAYRQRVSQ 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---D 243
               L G    L  ++   M +A    ++E A   RD++ AL+        +       D
Sbjct: 192 VLAILEGRKRELTRELTGRMQEAAAGLNFEEAAALRDQIRALNQTLEKQVVLGRERVDLD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF-YTDKPCPEN 302
            F L            F   G       FFL       +  +     R + +  +P P +
Sbjct: 252 VFGLVRRHGQVAAALLFIREGALADKREFFLAEPVGEDDEVLAELLRRFYEHPQRPIPRS 311

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL   AE  + L     ++ G  V++ VP++G+K+ ++  A  NA +    +   +   
Sbjct: 312 ILLPLPAEGAAALTEWLSEKRGGPVRLLVPRRGDKKALVTMAGDNAGQLLAAREKQQAGW 371

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
             + ++  +   L   P+RIE  D S++ G  AVG +V   +     ++YR+F++   ++
Sbjct: 372 LSLGEEIRRALRLTSSPQRIECLDISNLGGREAVGSLVSFRQGEKESSRYRRFHIR--NL 429

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
            T DD AMMR VL R   +    E               + PD+++LDGGKGQL  AQ V
Sbjct: 430 ATPDDYAMMREVLLRHLCRAAAAE---------------TLPDLLVLDGGKGQLGVAQAV 474

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L +L +     ++SIAK  +  +G   F   +   L L    P+L F  ++RDEAHRF I
Sbjct: 475 LAELALPG-PELVSIAKDRE-GSGERLFRPGRKNHLKLAQHSPVLLFFMKIRDEAHRFGI 532

Query: 543 TTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR+ RR+K   S L+EI G+GP RK+ LL+  G++  ++ ++PE LA++ GI  ++A 
Sbjct: 533 TFHRRLRRQKQLVSRLEEIPGVGPGRKQALLKQLGSLAGVAAATPEQLAAVPGIGPELAA 592

Query: 602 KIYNHFH-KNTSHTP 615
            I+ H        TP
Sbjct: 593 VIHRHLQLPRDGETP 607


>gi|319651771|ref|ZP_08005897.1| excinuclease ABC subunit C [Bacillus sp. 2_A_57_CT2]
 gi|317396590|gb|EFV77302.1| excinuclease ABC subunit C [Bacillus sp. 2_A_57_CT2]
          Length = 597

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 175/618 (28%), Positives = 296/618 (47%), Gaps = 43/618 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D  G ++YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12  LPAQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFTGS-HDGKTLRLVNEIVDFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           ++EAL+LE N+IK+  P++N++L+DDKS+P+I +T   + P L   R     +G YFGP+
Sbjct: 71  DMEALILEMNLIKKYDPKYNVMLKDDKSYPFIKLT-AERHPRLITTRKVKKDRGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C+        R CL + + +C  PC   +  ++Y +   
Sbjct: 130 PNVQAANETKKLLDRIYPLRKCSTLP----DRVCLYYHLGQCLAPCVKAVGEDQYKQMTD 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
           E  KFL+GG   +K+ +   M  A  + D+E A   RD++A +             +   
Sbjct: 186 EIAKFLNGGYKEIKKDLTAKMTAAAEELDFERAKELRDKIAHIDATMEKQKMTMTDFTDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +E     +          +   P  
Sbjct: 246 DVFGYAVDKGWMCVQVFFIRQGKLIERDVSMFPIYNEPEEEILTFLGQFYTKANHFKPRE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           IL  +  +     ++   K          P++G+K+ +++ A  NA  +  +K       
Sbjct: 306 ILAPDSVDAEMAEQLLDVKVLK-------PQRGQKKDLVKLAYKNAKIALQEKFSLIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  + + P RIE +DNS+I G   V  M+V  +    K +YRK+ + 
Sbjct: 359 EERTIKAVENLGDQLGI-YTPHRIEAFDNSNIQGTDPVSAMIVFIDGKPEKREYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+++++K E                 PD++++DGGKG + A
Sbjct: 418 S--VKGPDDYESMREVVRRRYTRVLKEE--------------LPLPDLIMIDGGKGHVEA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            + VL+ +L ++  I I  + K  K        +    + + L       Y +QR++DE 
Sbjct: 462 VRDVLENELGLD--IPISGLVKDEKHRTSQ-LLYGNPLQIIPLARNSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R K A  S LD+I GIG  RK+ LL++FG+VK +  +  E    I GI 
Sbjct: 519 HRFAITFHRQLRGKNAFQSILDDIPGIGEKRKKQLLKAFGSVKKMKEAPIEEYRKI-GIP 577

Query: 597 KKIACKIYNHFHKNTSHT 614
           + +A ++     +   + 
Sbjct: 578 ENVAEELKLRLEEQNGNP 595


>gi|225012391|ref|ZP_03702827.1| excinuclease ABC, C subunit [Flavobacteria bacterium MS024-2A]
 gi|225003368|gb|EEG41342.1| excinuclease ABC, C subunit [Flavobacteria bacterium MS024-2A]
          Length = 614

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 184/623 (29%), Positives = 309/623 (49%), Gaps = 50/623 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P+  GVYQ  D + RV+YVGKA NL+KR+ SY +  +   + + ++  I  I  
Sbjct: 25  IQLKSLPQVAGVYQYFDKSDRVIYVGKAKNLKKRVSSYFNKVHDNKKTSVLVKNIVRIEH 84

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE N+IK+ +PR+N+LL+DDK++P+I I  K   P ++  R        
Sbjct: 85  IVVETEMDALLLENNLIKKYQPRYNVLLKDDKTYPWICI-KKEPFPRVFYTRRVIKDGSE 143

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ ++  V   +  ++  + LRSC      + +   + + CL + +  C  PCT +I
Sbjct: 144 YFGPYTNMKTVMTLLGLVRTLYPLRSCKFDLSDEKIVAGKYKVCLEYHMGNCLAPCTKQI 203

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
            +E Y   +   ++ + G   +  +   R M+      ++E A + ++++ +L++ Q  +
Sbjct: 204 ETEDYDNNIKAIREIIKGNFKDSIQGFKRQMDSFATAMEFEKAQVVKEKIESLTNYQAKS 263

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  N +D FS+  +++   +       G    + T  +K   + ++A +L   + +
Sbjct: 264 TIVSPKINNVDVFSIVSDESYGYVNYIQVSHGGIVRSHTLEIKKKLDESDATLLQLGIIE 323

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                    N +   E    +L E          +K++VP QG+KRK+++ ++ NA    
Sbjct: 324 IRQLFFSSANEIYLSEP--VALGED---------LKVSVPLQGDKRKLVDLSIRNAKFFR 372

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            ++         E     I+        LP  P  IE +DNS+I G + V   VV     
Sbjct: 373 MERFKQMKIVDPERHTSRIMSQMKTDLRLPKEPYHIECFDNSNIQGSNPVAACVVFKNGK 432

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K +YR +N+    V+  DD A M  V+ RR+ +L++ E                 P +
Sbjct: 433 PSKKEYRHYNIKT--VQGPDDFASMEEVVYRRYKRLLEEE--------------APLPQL 476

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGGKGQLS+A   L  L +  +I+II IAK  +     E +F +    L ++ R   
Sbjct: 477 IVIDGGKGQLSSAVKSLDLLELRGKISIIGIAKRLE-----EIYFPEDSIPLYIDKRSES 531

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  +QR RDEAHRF IT HR++R K +  S LD+I+GIGP  +  LL  F ++K I ++S
Sbjct: 532 LKILQRARDEAHRFGITFHRQKRSKGSLNSELDQIDGIGPATRDKLLVHFKSLKRIKKAS 591

Query: 586 PETLASIEGISKKIACKIYNHFH 608
            E L  I G  K+   KIY   H
Sbjct: 592 KEELEKILG--KQNGAKIYIGLH 612


>gi|87302683|ref|ZP_01085494.1| excinuclease ABC subunit C [Synechococcus sp. WH 5701]
 gi|87282566|gb|EAQ74524.1| excinuclease ABC subunit C [Synechococcus sp. WH 5701]
          Length = 687

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 184/633 (29%), Positives = 307/633 (48%), Gaps = 29/633 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            +++P  PG Y M D+  R+LY+GK+ +L+ R++SY   ++  + RI+ M+ Q+  I F 
Sbjct: 42  LKELPAEPGCYLMRDVEDRILYIGKSKSLRSRVRSYFRESHDLSPRISLMVRQVCEIEFI 101

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT ++ EAL LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 102 VTDSDAEALALESNLIKAHQPHFNVLLKDDKKYPYLCITWSEPYPRIFITRRRRLRSPLD 161

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T   ++R F LR     ++R RT  CL F I RC G C  +IS E 
Sbjct: 162 RFYGPYVDVGLLRRTFFLVKRVFPLRQRPQPLYRDRT--CLNFDIGRCPGVCQEKISPEA 219

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +      G +  L + +   M +   +ED+E+A   RD+L  L  +        
Sbjct: 220 YQQILRKVAMVFQGRSDELLDLLRAQMARYADREDFEAAARVRDQLQGLEQLTAEQKMTL 279

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  ++ LA +Q      G+  G   +       +   +IL   L + Y 
Sbjct: 280 PDASVSRDVLALACDQRLAAVQLFQMRAGKLVGRLGYTADASI-AAPGEILQRVLEEHYG 338

Query: 296 D---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+        L++    ++ G KV++  P++ +K ++IE    NA    
Sbjct: 339 QVEPVEIPPEVLVQHPLPRQELVQEWLSERRGRKVRLAHPQRQQKAELIELVERNAAFEL 398

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
           ++   +   HQ+  +D  +   L   P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 399 SRAQRSAEQHQLATEDLAQLLDLSQPPRRIEGYDISHIQGSDAVASQVVFVDGLPAKQHY 458

Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQE--------YSFPS 462
           RK+ +  + +      D   M  ++ RRF +  + +       + +              
Sbjct: 459 RKYRIQSSSISAGHSDDFMAMAEIMRRRFRRWSQAKAEGADLTELRRAASTALHTGGLND 518

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPD+V++DGGKGQLSA    L++L++   + + S+AK  +     E F     + L    
Sbjct: 519 WPDLVMIDGGKGQLSAVMEALRELDLHEELVVCSLAKQRE-----EVFLPGAIQPLESEP 573

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA++ HR++R  +   S L EI G+GP R R LL  F ++  I
Sbjct: 574 DQLGVLLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSEIPGLGPKRVRDLLAHFRSIDAI 633

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             +SPE +A+  G+   +A +++ +FH      
Sbjct: 634 QLASPEQIAAAPGVGPALAQQVWGYFHPGDPEQ 666


>gi|253753449|ref|YP_003026590.1| UvrABC system protein C [Streptococcus suis P1/7]
 gi|253755723|ref|YP_003028863.1| UvrABC system protein C [Streptococcus suis BM407]
 gi|251818187|emb|CAZ55988.1| UvrABC system protein C [Streptococcus suis BM407]
 gi|251819695|emb|CAR45497.1| UvrABC system protein C [Streptococcus suis P1/7]
          Length = 594

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 174/614 (28%), Positives = 299/614 (48%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   +  G+++YVGKA NL+ R++SY    + T +   ++++I +  F 
Sbjct: 8   KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+  KPR+NI+L+DDKS+P+I IT K + P L   R      G Y
Sbjct: 67  VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +T+  L+R +  R C     ++    CL + + +C        S   Y 
Sbjct: 126 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           +   E  +FL+G +  + +++   M  A    ++E A  +RD L ++S ++     + + 
Sbjct: 182 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 241

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ ++ ++  +   K          P++GEK+++I  A  NA     +    
Sbjct: 302 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 355 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +    N V+  DD A MR VL+RR+S+++++                + PD++I+DGG+G
Sbjct: 414 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 458 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAI  HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +A   
Sbjct: 516 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGNIQSASLQEIAEA- 574

Query: 594 GISKKIACKIYNHF 607
           G+  K+A K+    
Sbjct: 575 GVPYKVAEKVKESL 588


>gi|317969880|ref|ZP_07971270.1| excinuclease ABC subunit C [Synechococcus sp. CB0205]
          Length = 682

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 193/652 (29%), Positives = 307/652 (47%), Gaps = 48/652 (7%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN---NHTHRITHMISQINNIR 59
            +++P  PG Y M D   R+LY+GKA  L+ R++SY  S     H+ RI  M+ Q+  I 
Sbjct: 15  LKEVPTEPGCYLMRDSEDRILYIGKAKVLRNRVRSYFQSGSGHGHSPRIALMVRQVCEIE 74

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ- 118
           F VT +E EAL LEAN+IK  +P FN+LL+DDK +PY+ IT     P ++  R       
Sbjct: 75  FIVTDSEAEALALEANLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSP 134

Query: 119 -GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              ++GP+  V  + +T+  ++R F LR     + R RT  CL + I RC G C  +ISS
Sbjct: 135 LDRFYGPYVDVGLLRRTLGLVKRVFPLRQRPQPLHRDRT--CLNYDIGRCPGVCQEKISS 192

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E Y   + +      G N  L + +   M +   + D+ESA   RD+L  +  +      
Sbjct: 193 EDYHRTLRQVAMVFQGRNEELLDLLHEQMERYAERLDFESAARVRDQLQGIDTLTADQKM 252

Query: 238 IYNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ--------- 284
                    D  ++  ++ +A +Q      G+  G   F        +            
Sbjct: 253 SLGDSSISRDVLAMAADERVAAVQLFQMRAGKLVGRLGFTADAIGMPSAEDGAGGDLPPS 312

Query: 285 ---------ILSYFLRQFYTD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVP 332
                    IL   + + Y+       P  +LL     +  LLE    +  G KV+++VP
Sbjct: 313 EARRAAMGRILQTVIEEHYSQVEGVEIPPELLLQAPLPQQQLLEDWLSELRGRKVRLSVP 372

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392
           ++ +K  +IE    NA+    +       + +  +D  +   L   P+RIE YD SHI G
Sbjct: 373 QRAQKADLIELVERNANYELERARRASEQNLLATEDLAQLLELNTPPRRIEGYDISHIQG 432

Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLN 450
             AV   VV  +    K  YRK+ +  + +++    D   M  ++ RRF +  + +    
Sbjct: 433 SDAVASQVVFIDGLPAKQHYRKYKIQSSSIRSGHSDDFMAMAEIMRRRFRRWAQAKAAGA 492

Query: 451 FHPKKQEYSFP--------SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502
              + ++ +           WPDVV++DGGKGQLSA    L++LN++  + + S+AK  +
Sbjct: 493 DLKELRQSAGSALHTGGLNDWPDVVMIDGGKGQLSAVMEALRELNLDEDVVVCSLAKQRE 552

Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEIN 561
                E F     E L        +  ++RLRDEAHRFA++ HR++R  +   S L +I 
Sbjct: 553 -----EVFIPGVKEPLESEPEQLGVQLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIP 607

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           G+GP R + LL  F ++  I  +SPE LA+  G+   +A  I++HFH     
Sbjct: 608 GLGPKRIKELLAHFRSIDAIQLASPEALAAAPGMGAGLAKVIWDHFHPGGDE 659


>gi|161950134|ref|YP_402756.2| excinuclease ABC subunit C [Shigella dysenteriae Sd197]
 gi|119367837|sp|Q32HE0|UVRC_SHIDS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 575

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 201/580 (34%), Positives = 313/580 (53%), Gaps = 31/580 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRL 570
            +RDE+H  AI  HRK+R K    S L+ I G+GP R++ 
Sbjct: 532 HIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQN 571


>gi|325479390|gb|EGC82486.1| excinuclease ABC, C subunit [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 616

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 193/619 (31%), Positives = 313/619 (50%), Gaps = 26/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +++PE PGVY M +    ++YVGKA +L+KR++ Y  +S N   ++  M++ I++  +
Sbjct: 9   KLKELPELPGVYIMRNADDEIIYVGKAISLKKRVRQYFDNSKNKGAKVLAMVNNIDHFEY 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +   EVEAL+LE+N+IK+ +P++NI+LRDDK +PYI I    K P + K R  S     
Sbjct: 69  IIVQNEVEALVLESNLIKKNRPKYNIVLRDDKQYPYIKI-CNEKYPRIKKVRQVSKDGSK 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGPF    AV   I+     +  R+C  +  +     RPCL + IK+C GPC G+   +
Sbjct: 128 YFGPFPDAYAVNDAIDLFHLYYPFRTCNLNFDKGASLDRPCLNYFIKKCKGPCVGKEDEK 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y++ + + + FL+  +  +   I   M++ + K ++E A  +RD   ALS I    +  
Sbjct: 188 EYLDHMKDVENFLANKDDKIPNWILEKMSEESKKLNFEMAAKYRDYYRALSVISEKQNVT 247

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               + MD  ++    N   +Q  F   G+      +F+K D    +++I+S F++QFY 
Sbjct: 248 ETNGDDMDIIAMSKGMNTIVVQVFFMRQGKIVDRQHYFIKNDFMERDSEIISSFIKQFYL 307

Query: 296 DK-PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR---- 350
           D    P  IL+     +   +      +   KV I  PK G+KR++++ A  NA      
Sbjct: 308 DILYIPREILVQTLPNDIDSISEFLTNKRKTKVTIHEPKIGKKRELVDMAARNALDMRIK 367

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +    +   L     R+E YD S+I G  +VG MVV  +   +  
Sbjct: 368 HDKRVEKKERKRSSGISQLKEILGLE-DVFRLEAYDISNISGVRSVGSMVVFEDGIPMPK 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YRKF +    V+  +D A  + VL RR  Q I+ +   N         F S PD++++D
Sbjct: 427 EYRKFKIKT--VEGPNDYASHKEVLTRRLKQGIEEKSKGNTQT-----GFGSLPDLILMD 479

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A+GVL +L +   I I  + K  K +       +   E + +N RDP+   I
Sbjct: 480 GGKGQVNIAKGVLNELGL--NIEIAGLVKDDKHTTRA---IIYNNEEIPINRRDPVYKLI 534

Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
             +++EAHRFAI  HRK  +     S LD I G+G   ++ L   F T+  I ++S E L
Sbjct: 535 YEIQEEAHRFAINYHRKLMQNTMKTSELDNIKGVGKKTRKNLYTHFKTISNIKKASVEEL 594

Query: 590 ASIEGISKKIACKIYNHFH 608
             +  + K  A +IY +F 
Sbjct: 595 MEVPLVGKSQALEIYKYFR 613


>gi|157827032|ref|YP_001496096.1| excinuclease ABC subunit C [Rickettsia bellii OSU 85-389]
 gi|157802336|gb|ABV79059.1| excinuclease ABC subunit C [Rickettsia bellii OSU 85-389]
          Length = 633

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 236/642 (36%), Positives = 356/642 (55%), Gaps = 49/642 (7%)

Query: 1   MSSE--QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+   +PE  GVY+M D   +V+YVGKA NL+KR+ +Y    +   +   M++   ++
Sbjct: 9   IKSKLIDIPERSGVYRMFDANKQVIYVGKAKNLKKRLTNY-IKTDLDTKTLRMVANTCSL 67

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            +++T +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I +   H  P L K+R  +   
Sbjct: 68  EYSITNSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGRALND 127

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G +FGPFAS   V  T++ LQ+ F LRSC D+ F  RTRPCL ++IKRC  PC G+I+ +
Sbjct: 128 GKFFGPFASATEVNTTLSELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKK 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E V + K FL G +  L+E +++ M + + +  +E A   RDR+ ALS++Q      
Sbjct: 188 DYAELVGQVKDFLQGRSKELQENLSKKMEELSEQMRFEEAAEIRDRIKALSYVQLKAGIT 247

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++       C++   +  GQ  G   +F  +   ST  ++L +FL QFY  
Sbjct: 248 DIVKDADIIAIVEKNGHYCVEVFLYRIGQACGNIPYFPTSTENSTKEEVLKHFLLQFYQK 307

Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I+++ E ++   ++E         K+ IT+P  G K K+++ A  NA  S  Q 
Sbjct: 308 QQVPPGIIINHEIDDKDNIIEAIRNINDFAKLSITIPASGGKLKLVQNAQENALFSLEQY 367

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L     +Q ++ +  + F LP IP+RIE+YDNSHI G  AVG M+V G++GF K +YR F
Sbjct: 368 LKKFAKNQELMFEVKELFNLPEIPERIEVYDNSHIQGKFAVGVMIVAGKSGFDKKEYRVF 427

Query: 416 NL--------------------------HPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
           +L                           P      DD  M+R VL RR ++L +     
Sbjct: 428 SLSSRDSITGSSKSTNNDSISCFLDTVDKPRYDTKGDDYEMLRQVLTRRLTRLKQE---- 483

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                         P ++I+DGGKG L   + V+ KL ++  I  + ++KGP R+AG+E+
Sbjct: 484 ----------PHRLPSLMIIDGGKGHLGIVKEVMNKLQMD--IPFVCMSKGPDRNAGLEQ 531

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRK 568
           F +   E   LN   P++ ++Q LRDEAH FAI  HR  R +A   S LDEI GIG  RK
Sbjct: 532 FHMVGREVFTLNKNLPLMKYLQILRDEAHNFAIKNHRLSRSRAIKVSSLDEIEGIGDTRK 591

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           + LL  FG+ K +S ++ + L+ ++GISK +A  I+N  HKN
Sbjct: 592 KALLHYFGSYKAVSDATLDELSKVKGISKSLAKMIFNALHKN 633


>gi|318041434|ref|ZP_07973390.1| excinuclease ABC subunit C [Synechococcus sp. CB0101]
          Length = 666

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 189/643 (29%), Positives = 302/643 (46%), Gaps = 37/643 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN---NHTHRITHMISQINNIR 59
            +++P  PG Y M D   R+LY+GKA  L+ R++SY  S     H+ RI  M+ Q+  I 
Sbjct: 18  LKEVPAEPGCYLMRDAEDRILYIGKAKVLRNRVRSYFQSGSGHGHSPRIALMVRQVCEIE 77

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ- 118
           F VT +E EAL LEAN+IK  +P FN+LL+DDK +PY+ IT     P ++  R       
Sbjct: 78  FIVTDSEAEALALEANLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSP 137

Query: 119 -GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              ++GP+  V  + +T+  ++R F LR     + + RT  CL + I RC G C  +ISS
Sbjct: 138 LDRFYGPYVDVGLLRRTLGLVKRVFPLRQRPQPLHKDRT--CLNYDIGRCPGVCQEKISS 195

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E Y   + +      G N  L + +   M +   + D+ESA   RD+L  +  +      
Sbjct: 196 EDYHRTLRQVAMVFQGRNEELLQLLQEQMERYAERLDFESAARVRDQLQGIDTLTADQKM 255

Query: 238 IYNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY----- 288
                    D  +L  ++ +A +Q      G+  G   F        T  +         
Sbjct: 256 SLGDSSVSRDVLALAADERVAAVQLFQMRAGKLVGRLGFTADAIGLPTEEERPEALGRIL 315

Query: 289 --FLRQFYTD---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
              + + Y+       P  +LL     +  L+E    +  G KV++ VP++ +K  +IE 
Sbjct: 316 QTVIEEHYSQVEPVEIPPELLLQVPLPQQELIEEWLTELRGRKVRLAVPQRSQKADLIEL 375

Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
              NA     +       + +  +D  +   LP  P+RIE YD SHI G  AV   VV  
Sbjct: 376 VTRNAAYELERARRASEQNLLATEDLAQLLELPTPPRRIEGYDISHIQGSDAVASQVVFI 435

Query: 404 ENGFVKNQYRKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQE---- 457
           +    K  YRK+ +  + ++     D   M  ++ RRF +  + +       + +     
Sbjct: 436 DGLPAKQHYRKYKIQSSSIRAGHSDDFMAMAEIMRRRFRRWAQAKAEGADLRELRRAAGT 495

Query: 458 ----YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513
                    WPDVV++DGGKGQLSA    L++LN++  + + S+AK  +     E F   
Sbjct: 496 ALHTGGLNDWPDVVMIDGGKGQLSAVMEALRELNLDEELVVCSLAKQRE-----EVFVPG 550

Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLL 572
             + L        +  + RLRDEAHRFA++ HR++R  +   S L +I G+GP R + LL
Sbjct: 551 AKQPLESEPDQLGVQLLCRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGPKRIKELL 610

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
             F ++  I  +S E+LA+  G+   +A  ++++FH      P
Sbjct: 611 AHFRSIDAIQLASVESLAAAPGMGPGLARVVWDYFHPQDLPAP 653


>gi|120437498|ref|YP_863184.1| excinuclease ABC subunit C [Gramella forsetii KT0803]
 gi|189038058|sp|A0M672|UVRC_GRAFK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|117579648|emb|CAL68117.1| UvrABC system protein C [Gramella forsetii KT0803]
          Length = 597

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/625 (29%), Positives = 303/625 (48%), Gaps = 50/625 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVYQ  D  G++LYVGKA NL+KR+ SY + N+ +HRI  M+ +I  I+ 
Sbjct: 8   VQLKTLPNSPGVYQYFDKNGKILYVGKAKNLKKRVTSYFNKNHDSHRIGVMVKKICEIKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +E +ALLLE N+IK+ +PRFN++L+DDK++P+I I    + P ++  R        
Sbjct: 68  IVVASETDALLLENNLIKKHQPRFNVMLKDDKTYPWICI-KNERFPRVFPTRRLIKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           Y+GPF S   V   ++ ++  + LR+C      D +   + + CL + +  C GPC G  
Sbjct: 127 YYGPFTSFKTVNTLLDLIKGLYKLRTCNYDLAEDKIRNGKYKVCLEYHLGNCLGPCEGFQ 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
             E+Y   +   ++ + G   +  ++    M Q + K ++E A   ++++  L + Q  +
Sbjct: 187 PEEEYNNNIEAIRQIVKGNFKDSLQRFRNQMKQHSEKMEFEDAQRIKNKIDVLENYQAKS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  N +D FS+  ++    +       G    + T  +K   + ++ ++L   + +
Sbjct: 247 TVVNPRINNVDVFSVVSDEGYGYVNFLQLSHGAIIRSHTIEMKKKLDESDRELLELAIVE 306

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                      +      +  + E          +KI +PK G+K+KI+E +  NA    
Sbjct: 307 IRQRFSSNSTEIYV--PFKVDVGEE---------LKIVIPKLGDKKKIVELSQRNAKYFR 355

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            ++         +     ++    +   L   P+ IE +DNS+I G + V   VV     
Sbjct: 356 QERFKQMKIVDPDRHVNRVMAQMKEDLRLGKEPRHIECFDNSNIQGTNPVAACVVFKNGK 415

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YRKFN+    V+  DD A M  V+ RR+ +L+   E+L              P++
Sbjct: 416 PSKKDYRKFNIKT--VEGPDDFASMEEVVFRRYRRLLNEGEDL--------------PEL 459

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +I+DGGKGQLS+    L+ L +  +I II IAK  +     E F+ +    L L+ +   
Sbjct: 460 IIVDGGKGQLSSGVKALETLGLRGKIAIIGIAKRLE-----EIFYPEDSIPLYLDKKSET 514

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ+LR+EAHRF IT HR +R K A  + L+ I GIG      LL  F ++K I  +S
Sbjct: 515 LKIIQQLRNEAHRFGITFHRNKRSKTALNTELESIQGIGEKTVVELLTHFRSLKRIKEAS 574

Query: 586 PETLASIEGISKKIACKIYNHFHKN 610
            + LA + G     A  I N +H  
Sbjct: 575 QKELADVVG--SAKAAIICNFYHSE 597


>gi|15615659|ref|NP_243963.1| excinuclease ABC subunit C [Bacillus halodurans C-125]
 gi|20140835|sp|Q9K8A9|UVRC_BACHD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|10175719|dbj|BAB06816.1| excinuclease ABC (subunit C) [Bacillus halodurans C-125]
          Length = 591

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 176/612 (28%), Positives = 297/612 (48%), Gaps = 43/612 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   + H  +   ++ +I +  + VT +
Sbjct: 12  LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGS-HDAKTQRLVGEIADFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  P++N++L+DDKS+PY+ +T++   P L   R      G YFGP+
Sbjct: 71  NIEALILEMNLIKKHDPKYNVMLKDDKSYPYLKLTNEE-HPRLVTTRKLKKDGGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +T   L R + LR C         + CL + I +C  PC  E++ E+  + V 
Sbjct: 130 PNAGAANETKKLLDRLYPLRKCRTLP----DKVCLYYHIGQCLAPCVYEVTPEQNEQMVQ 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E  +FL  G+  +K ++ + M++A  + ++E A   RD L  +  +      + N     
Sbjct: 186 EITRFLKYGHKEVKVELEKKMHKAAEELNFERAKELRDTLGYMEAVMEKQTMMVNDRVDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F   ++K   C+Q  F   G+             E+    +          D   P  
Sbjct: 246 DVFGYAYDKGWMCVQVFFVRQGKLIERDVSIFPFYKEAEEDFLTFIGQFYLQKDHIKPGE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           +LL    +   + ++         V + +PK+G+K+++++ A+ NA              
Sbjct: 306 VLLPAGTDAALVEQLL-------DVSVHIPKRGKKKELVDVAMRNATMALKEKFALIERN 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    RIE +DNS+I G   V  MV   +    K +YRK+ + 
Sbjct: 359 EERTIKAVEQLGEAMGIPTP-YRIEAFDNSNIQGTDPVSAMVAFIDGKPNKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   MR V+ RR+ +L+K + +L              PD++++DGGKGQ++A
Sbjct: 418 T--VTGPDDYESMREVVRRRYVRLLKEQRSL--------------PDLIVIDGGKGQIAA 461

Query: 479 AQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AQ +L  +L +   I +  +AK  K             + + L       Y +QR++DE 
Sbjct: 462 AQEILHDELGLS--IPVCGLAKDEKHRTSQ-LLLGDPPQVVPLKRDSHEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA+T HR+ R K  + S LD++ GIG  RKR LL+ FG+VK +  +S +   ++  I 
Sbjct: 519 HRFALTFHRQTRSKTFFQSVLDDVPGIGEKRKRQLLKHFGSVKKMKEASIDDFLAL-SIP 577

Query: 597 KKIACKIYNHFH 608
           K +A  +YN   
Sbjct: 578 KSVAETLYNKLQ 589


>gi|297171219|gb|ADI22227.1| nuclease subunit of the excinuclease complex [uncultured
           Gemmatimonadales bacterium HF0200_34B24]
          Length = 596

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 174/609 (28%), Positives = 284/609 (46%), Gaps = 38/609 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
           ++   PGVY   D  GRVLYVGKA +L+ R++SY     +   +   ++ +I+ +   V 
Sbjct: 10  KLTTKPGVYIFRDTGGRVLYVGKAKSLRTRVRSYFHREADLGAKNRKLVREIDALETIVV 69

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EAL+LEAN+IK  +PRFNILLRDDK +PYI +T     P +Y  R  +  Q  YFG
Sbjct: 70  GSESEALILEANLIKEHRPRFNILLRDDKQYPYIKVTVGEPFPRVYVTRHVANDQSRYFG 129

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182
           P+ SV  + + +  ++    +RSC   + +    R CL + I RC  PC G  S   Y  
Sbjct: 130 PYTSVGPMRQALEVVKHLHTVRSCRYDLPKDSPERACLDYHIGRCKAPCVGLQSETDYGA 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            + +  K L G    +++ +   M  A+   D+E A   RD LA L  +           
Sbjct: 190 MIDDILKILEGKTEEIRDTVEERMESASALLDFERAAKLRDALAGLDSLAREQRVQRTKG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
              D   +  +  L          G      +       + +++ +L   + + Y     
Sbjct: 250 GSFDIVGMARDGELGAGVVLKVRSGLLLSRDSLRFVRIFQESDSDLLESLISRHYLGRGS 309

Query: 297 ---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
              K  P  +LL ++   + +L     +  G KV++ VP +GEKR ++E A  NA +   
Sbjct: 310 SVLKDLPREVLLPQDIPGSVVLSEVLSESAGRKVELRVPIRGEKRSLLELAEQNARQVLD 369

Query: 354 QKLSTEISHQMILKD----FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
            +++T        +D          L  +P+ +  +D SHI G   V   VV       +
Sbjct: 370 DRVTTLAHVGDRAEDALFSLQDALDLKVVPRLMVCFDISHIQGTETVASAVVFENGEPKR 429

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YR   +        DD   M+  +ER F +       L               D+ ++
Sbjct: 430 TSYRHMRIKGE--WGNDDFRSMKEAVERYFRRQQDEGNPLA--------------DLTVV 473

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+ QL+AA   L    + + +++ ++AK  +     E F   + E++ L+ R+  L+ 
Sbjct: 474 DGGRAQLTAAVAALDDAGISD-VSVAALAKKRE-----EVFLPGQRESVHLDRRNRALHL 527

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +QR+RDEAHRFA+  +RK R +    S L EI GIGP R+ +LL+ FG+++ +  +S E 
Sbjct: 528 LQRIRDEAHRFALRYNRKLRSRRTIRSELGEIPGIGPHRQTVLLRRFGSLQGVREASKED 587

Query: 589 LASIEGISK 597
           +A + G S+
Sbjct: 588 IARVPGFSE 596


>gi|116074853|ref|ZP_01472114.1| excinuclease ABC subunit C [Synechococcus sp. RS9916]
 gi|116068075|gb|EAU73828.1| excinuclease ABC subunit C [Synechococcus sp. RS9916]
          Length = 656

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 188/634 (29%), Positives = 298/634 (47%), Gaps = 29/634 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61
            +++P  PG Y M D   R+LYVGK+  L+ R++SY  S +  + RI  M  Q+  I F 
Sbjct: 20  LKEIPSEPGCYLMRDREDRILYVGKSKALRSRVRSYFRSRHELSPRIRLMTRQVCEIEFI 79

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT +E EAL+LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 80  VTDSEAEALVLESNLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 139

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R F LR     ++  RT  CL   I RC G C  +ISSE 
Sbjct: 140 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLYADRT--CLNHAIGRCPGVCQEKISSED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   + +      G +  L+  +   M +   + D+ESA   RD+L  L  +        
Sbjct: 198 YHRTLRKVAMVFQGRSDELQVLLNEQMERYAERLDFESAARVRDQLQGLDQLTADQKMSL 257

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  +  +A +Q      G+  G   F           QIL   + + Y+
Sbjct: 258 PDSSVSRDVLALACDDKVAAVQLFQMRAGKLVGRLGFTAD-AHGLNPGQILQRVIEEHYS 316

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+     +  L+E    +Q   +V I  P++ +K  +IE    NA    
Sbjct: 317 QVDAVEVPPKLLVQHPLPQQPLMEEWLGEQRERRVVIECPQRRQKADLIELVQRNAEFEL 376

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +    +    +  +D  +   LP  P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 377 LRAQQGQEQQALATEDLAQLLELPRPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 436

Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNF--------HPKKQEYSFPS 462
           RK+ +    ++     D   M  ++ RRF +  + +                 Q      
Sbjct: 437 RKYKIRSASIQAGHSDDFMAMAEIMRRRFRRWARVKAEGADLGALRHKGGSALQTDGLND 496

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPDVV++DGGKGQLSA    L++LN+   + + S+AK  +     E F   + + +    
Sbjct: 497 WPDVVMIDGGKGQLSAVMEALRELNLHEDLNVCSLAKQRE-----EIFLPGESQPVDSEP 551

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA++ HR++R  +   S L +I G+GP R R LL  F ++  I
Sbjct: 552 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGPKRIRDLLAHFNSIDAI 611

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
             +S + L+   G+   +A +I ++FH + S  P
Sbjct: 612 QLASVDQLSVAPGVGPSLAQQIRDYFHPDESEAP 645


>gi|223932468|ref|ZP_03624470.1| excinuclease ABC, C subunit [Streptococcus suis 89/1591]
 gi|223898922|gb|EEF65281.1| excinuclease ABC, C subunit [Streptococcus suis 89/1591]
          Length = 622

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 173/614 (28%), Positives = 300/614 (48%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   +  G+++YVGKA NL+ R++SY    + T +   ++S+I +  F 
Sbjct: 36  KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVSEIADFEFI 94

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+  KPR+NI+L+DDKS+P+I IT K + P L   R      G Y
Sbjct: 95  VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDSGQY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +T+  L+R +  R C     ++    CL + + +C        S   Y 
Sbjct: 154 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGENLPSLSDYD 209

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           +   E  +FL+G +  + +++   M  A    ++E A  +RD L ++S ++     + + 
Sbjct: 210 KMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 269

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 270 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHL 329

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ ++ ++  +   K          P++GEK+++I  A  NA     +    
Sbjct: 330 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 382

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 383 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 441

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V+  DD A MR VL+RR+S++++++               + PD++I+DGG+G
Sbjct: 442 YKIKT--VEGPDDYASMREVLQRRYSRVLRDD--------------LTPPDLIIIDGGQG 485

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 486 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 543

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAI  HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +A   
Sbjct: 544 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSIGNIQSASLQEIAEA- 602

Query: 594 GISKKIACKIYNHF 607
           G+  K+A  +  + 
Sbjct: 603 GVPYKVAELVKENL 616


>gi|72382168|ref|YP_291523.1| excinuclease ABC subunit C [Prochlorococcus marinus str. NATL2A]
 gi|90111757|sp|Q46L08|UVRC_PROMT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|72002018|gb|AAZ57820.1| Excinuclease ABC subunit C [Prochlorococcus marinus str. NATL2A]
          Length = 640

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 199/631 (31%), Positives = 318/631 (50%), Gaps = 29/631 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61
            + +P  PG Y M D   R+LYVGK+  L+ R++SY  S N  + RI+ M+ Q+ +I   
Sbjct: 17  LKDIPNDPGCYLMKDGEDRLLYVGKSKKLRNRVRSYFRSGNELSPRISLMVRQVADIELI 76

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI--QG 119
           VT  E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT   K P ++  R       + 
Sbjct: 77  VTDNESEALTLESNLIKSHQPYFNVLLKDDKKYPYVCITWGDKYPRIFLTRKRRQRQLKD 136

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+  V  + +T+ S+++ F LR     +++ RT  CL + I RC G C  EISSE 
Sbjct: 137 KYYGPYVDVYLLRQTLFSIKKLFPLRQRRIPLYKDRT--CLNYSIGRCPGVCQEEISSED 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   +   +    G    L+  + + M   +    +E A   RD+L  +  +      I 
Sbjct: 195 YKNTLKRVEMIFQGRTDELRILLEKQMISFSESLKFEEAGSVRDQLKGIDRLYESQKMII 254

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++   +N++ +Q      G+  G   +F    + ++ +QIL   +   Y+
Sbjct: 255 PDSSVCRDIIAMASEENISSVQIFQMRSGKLIGRLGYFSDNSNFNS-SQILQQVIENHYS 313

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
           +      P  IL+  +     L+     +    KV I VPK+  K +II+    NA+   
Sbjct: 314 NVDPVEIPSEILVQHQLVNNILISDWLSEIKKQKVNINVPKRSRKAEIIKLVEKNANLEL 373

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +   ++  + + L D T    L +IPKRIE YD SHI G  AV   VV  +    +  Y
Sbjct: 374 QRIKQSQDKNLVELDDLTNILDLENIPKRIECYDISHIQGSDAVASQVVFIDGIAARQHY 433

Query: 413 RKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEEN--------LNFHPKKQEYSFPS 462
           R++ +   ++K    DD   M  V+ RRF +  + +E          N        +   
Sbjct: 434 RRYKIKSPNIKIGHSDDFESMAEVITRRFRRWARFKEEGGDIDALLSNESSVLDNLNLND 493

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPD+V++DGGKGQLS+    L+ L ++  + +IS+AK  +     E F  K  ++LV   
Sbjct: 494 WPDLVVIDGGKGQLSSVVAALEGLKLDQNLNVISLAKKKE-----EVFIPKVKQSLVTES 548

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
             P +  ++RLRDEAHRFAIT HR++R  +   S L+EI G+GP R +LLL+ F +++ I
Sbjct: 549 NQPGMLLLRRLRDEAHRFAITFHRQKRSQRMKRSQLNEIPGLGPQRIKLLLEHFRSIEAI 608

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             ++   L+S  G+ +  A  I N+FH + +
Sbjct: 609 QMATFSELSSTPGLGRSTAVVIRNYFHPDKN 639


>gi|257066537|ref|YP_003152793.1| excinuclease ABC, C subunit [Anaerococcus prevotii DSM 20548]
 gi|256798417|gb|ACV29072.1| excinuclease ABC, C subunit [Anaerococcus prevotii DSM 20548]
          Length = 616

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 188/619 (30%), Positives = 304/619 (49%), Gaps = 26/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +++P+ PGVY M +    ++YVGKA +L++R++ Y  ++ N   ++  M+  I++  +
Sbjct: 9   KLKELPDLPGVYIMRNAEDEIIYVGKAISLKRRVRQYFDNNKNKGAKVLAMVKNIDHFEY 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +   EVEAL+LE+N+IK+ +PR+NI+LRDDK +PYI I  K K P + K R      G 
Sbjct: 69  IIVQNEVEALVLESNLIKKNRPRYNIVLRDDKQYPYIKI-CKEKYPRIKKVRQVLKDGGR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           YFGPF    AV   I+     +  R+C  +  +     RPCL + I +C GPC  +   +
Sbjct: 128 YFGPFPDAYAVNDAIDLFHLYYPFRTCNLNFDKGARLDRPCLNYFIHKCKGPCVDKEDEK 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y+  + +  KFL   +  +   +   MN A+   ++E A  +RD   ALS I    +  
Sbjct: 188 RYLNHIDDVVKFLENKSEKIPNWVLAKMNDASKDLNFEMAAKYRDYYRALSVISERQNVT 247

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               + +D  ++    N   IQ  F   G+      F +K D   T++ I+S F++QFY 
Sbjct: 248 ETGGDDLDIIAMSKGMNSIIIQVFFMRMGKIVDREHFIIKNDFMETDSDIMSSFIKQFYL 307

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR---- 350
           D    P+ IL+     +   +     ++   KV I  PK G+K+++++ A  NA      
Sbjct: 308 DIMYVPKEILVQYMPADFDSISEFLSRKKKSKVYIHNPKLGKKKELVDMASRNALDMRIK 367

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      +        L     R+E YD S+  G  +VG MVV         
Sbjct: 368 YDKRVERKERKKSSGINQLMDILNLK-DVFRVECYDISNTSGVLSVGSMVVFEGGIPTPK 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YRKF +    V   DD A  R VL RR  + ++ +E  N         F S PD++++D
Sbjct: 427 EYRKFKIKT--VVGSDDYASHREVLTRRLKRGLEEKEKGNTQT-----GFGSLPDLILMD 479

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A+ V+  L +   I +  + K  K +       V   E + +N RDP+   I
Sbjct: 480 GGKGQVTIAKEVIDGLGLS--IEVAGLVKDDKHTTRA---IVYNNEEIAINRRDPVYKLI 534

Query: 531 QRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
             +++EAHRFAI  HRK  +     + LD I G+G   ++ L + F T+  I ++S E L
Sbjct: 535 YEIQEEAHRFAINYHRKLMQNTMKTTELDNIKGVGEKTRKNLYKHFKTISNIKKASVEEL 594

Query: 590 ASIEGISKKIACKIYNHFH 608
             +  + K  A +IY +F 
Sbjct: 595 MEVPLVGKVQALEIYKYFR 613


>gi|187934936|ref|YP_001887530.1| excinuclease ABC subunit C [Clostridium botulinum B str. Eklund
           17B]
 gi|187723089|gb|ACD24310.1| excinuclease ABC, C subunit [Clostridium botulinum B str. Eklund
           17B]
          Length = 626

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 201/625 (32%), Positives = 344/625 (55%), Gaps = 19/625 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I+   +
Sbjct: 9   QLKILPDEPGVYLMKNSLGEVIYVGKAKILKNRVRQYFQNSKNHSEKVKAMVKNISEFEY 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+  PR+NILL+DDK +P+I +T   + P ++  R  +     
Sbjct: 69  IITDSEMEALILECNLIKKYSPRYNILLKDDKFYPFIKVTINEEFPKIFITRKYAKDGNK 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ ++ +V +T+N +++ F +R+C  ++    + TRPCL + IK+C+ PC G IS +
Sbjct: 129 YFGPYTNIASVYETMNLIKKIFPIRTCKKTITEGGNPTRPCLNYHIKKCNAPCAGYISKD 188

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   + E  + LSG N +L  K+ ++M  A+   ++E A   RD++ A+++I       
Sbjct: 189 EYRNMISEVMELLSGKNKDLVNKLQKDMEDASKSLEFEKAASLRDKIIAINNIVEKQKVF 248

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +LY ++   C+Q  F   G+  G   F L+  +    + ILS F+  FY 
Sbjct: 249 KSQEGDEDFINLYKDEKDCCVQVFFLRDGKVTGREHFILENSTYQEESSILSQFMISFYG 308

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
             P     +   + ++T +LE     + G KV + VPK+G K++++E    NA     + 
Sbjct: 309 GTPKVPKHIYIPKEQDTEILEEFLKIKRGSKVNVKVPKKGSKKEMLELVKNNAKLTLEQF 368

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  +  ++  L++  +   L  IP RIE +D S+I G  +VG M+V        + 
Sbjct: 369 KEKLLMDKKINRGCLEELKELLNLDDIPNRIESFDISNIQGVDSVGSMIVFENGKAKNSD 428

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F++   +VK  ++   MR +LERRF   +K  +E    + +     F ++PD++++D
Sbjct: 429 YRRFSIK--NVKNGNEYDSMREILERRFVHGLKEVKEIQERNLQFSNGKFSNFPDLIMMD 486

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A+ VL KL++  +I +  + K  + S     +  ++      N    ++ FI
Sbjct: 487 GGKGQVNVAKEVLNKLDI--QIPVCGLVKDDRHSTRGIIYNNEEIII---NRSSNLMQFI 541

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           +R++DE HRFAIT HR  R K+  +S L++I  IG  R+R LL  FG+V+ I  +  E L
Sbjct: 542 RRVQDEVHRFAITYHRSLRDKRTLHSILEDIPNIGEKRRRALLMKFGSVENIKNAKLEEL 601

Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614
            S E I  K A  I ++F K+  ++
Sbjct: 602 LSTESIDNKAAESIISYFKKHEHNS 626


>gi|322373163|ref|ZP_08047699.1| excinuclease ABC subunit C [Streptococcus sp. C150]
 gi|321278205|gb|EFX55274.1| excinuclease ABC subunit C [Streptococcus sp. C150]
          Length = 595

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 174/619 (28%), Positives = 301/619 (48%), Gaps = 39/619 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPDNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+   P+FNI L+DDKS+P+I IT K   P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIQENMPKFNIRLKDDKSYPFIKIT-KELYPRLLITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + I +C+       + + + 
Sbjct: 126 FGPYPDAGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCNAHTICHTTRDYWQ 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238
             V + K FL+G ++ +  ++   M   + + ++E A  +RD + A+S ++         
Sbjct: 182 GLVEDVKNFLNGHDNKIVNQLKVKMKDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +E+    +         +   
Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEEDFLTYMGQFYLDSRHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I +  + ++ S+         G  VK+  P++GEK++++  A  NA     +    
Sbjct: 302 KPKEIFIPGDIDQESVEA-----LVGDGVKVFKPQRGEKKQLVNLATKNARVSLTQKFDL 356

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   Q  +++  K   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 357 LEKDLAKTQGAVENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V+  DD A MR V+ RR+S++ ++                + PD++I+DGG+G
Sbjct: 416 YKIKT--VQGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIMDGGQG 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ VL+K  +   I +  + K  K     E  F    + + L  +    + + R++
Sbjct: 460 QVNVAKDVLRK-ELNLSIPVAGLQKNDKHQT-NELLFGDPLQVIDLPRQSEEFFLLHRIQ 517

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD + G+GP RK+ LL+ F ++  I +++ E + ++ 
Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKHFKSMTAIQKATVEDIHAL- 576

Query: 594 GISKKIACKIYNHFHKNTS 612
           GI +K+A  + +  + + +
Sbjct: 577 GIPEKVAQALLDKLNDDNN 595


>gi|76786803|ref|YP_329921.1| excinuclease ABC subunit C [Streptococcus agalactiae A909]
 gi|77405386|ref|ZP_00782480.1| excinuclease ABC, C subunit [Streptococcus agalactiae H36B]
 gi|92058698|sp|Q3K0N2|UVRC_STRA1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|76561860|gb|ABA44444.1| UvrABC system, C protein [Streptococcus agalactiae A909]
 gi|77175968|gb|EAO78743.1| excinuclease ABC, C subunit [Streptococcus agalactiae H36B]
          Length = 593

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 171/615 (27%), Positives = 294/615 (47%), Gaps = 41/615 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY H +++T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+PYI IT+  + P L   R      G+Y
Sbjct: 67  VTTSNTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C+     + +   + 
Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
               + K+FL+G ++ +   +   M  A +  ++E A  +RD + A+S ++     I+  
Sbjct: 182 SLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQD 241

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  + +K   C+Q  F   G+            +E     +         T   
Sbjct: 242 MKDRDVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + ++ +  S+  I          KI  P++GEK++++  A+ NA     +    
Sbjct: 302 LPKEVFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++      +P    RIE +DNS+I G S V  MVV       K  YRK
Sbjct: 355 LEKDIRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K+                + PD++++DGG+G
Sbjct: 414 FKIKT--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 458 QVNIARDVI-ENQLGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  E +    
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKADIEDIIM-C 574

Query: 594 GISKKIACKIYNHFH 608
           GI + +A  + +  +
Sbjct: 575 GIPRTVAESLRDSLN 589


>gi|297587656|ref|ZP_06946300.1| excision endonuclease subunit UvrC [Finegoldia magna ATCC 53516]
 gi|297574345|gb|EFH93065.1| excision endonuclease subunit UvrC [Finegoldia magna ATCC 53516]
          Length = 608

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 191/619 (30%), Positives = 317/619 (51%), Gaps = 28/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P  PGVY M D    ++YVGKA +L++R+  Y  S+    ++  M+S +    + 
Sbjct: 7   ELQKVPHKPGVYIMHDKNDEIIYVGKAIDLRRRVGQYFDSSQKLAKVAAMVSHVEYFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E EAL+LE+N+IK+  P++NI+LRDDK +PYI IT+  K P + K R     +  Y
Sbjct: 67  IVNNECEALVLESNLIKKNSPKYNIVLRDDKQYPYIKITN-EKFPRVLKTRRVLKDKAKY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179
           FGPF +  AV   I+ +  T+ +R+C  +  + +   RPCL + I RC G C  ++  E 
Sbjct: 126 FGPFPNAYAVNDIIDLIHETYKIRTCNLNFDKGQTLKRPCLNYYINRCDGMCVYDVDEED 185

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + E + FL+G    L +K+   M  A+   ++E A   RD +A +  I    +   
Sbjct: 186 YNKELLEVENFLNGREDELTKKLTDKMMAASKNLNFELAAKFRDSIANIQVILEKQNITN 245

Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                +D  S+       C+Q  F   G+      F +    E +N  I+  F +QFY D
Sbjct: 246 TKGLDLDMISMAREAETVCVQVFFMRNGKIIERQHFIIDNKYEESNEHIVGEFFKQFYID 305

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----S 351
               P+ IL   + E+  L+E    ++ G KV+I +PK+G K  ++E   +NA       
Sbjct: 306 LTYVPKQILTDIDIEDRELIEEMLTEKKGSKVEIKIPKRGNKTDLLEMVRVNAKEGLDKY 365

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
            ++ L  E + +  + D      +  I  RIE YD S+  G  +VG M+V          
Sbjct: 366 ISRHLKRERNRENAILDLQDITGVKPID-RIECYDISNTSGVDSVGSMIVFKNGTKSPKD 424

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF +    V+  DD A  + VL RRF +L+ +++        ++ SF   P ++++DG
Sbjct: 425 YRKFKIKT--VEGADDYASHKEVLTRRFRRLLDSDK--------KDNSFDEMPSIILMDG 474

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQ++ A+ VL + N++  I I+ + K  K         + + + + L +  P+   + 
Sbjct: 475 GKGQVNIAKEVLDEFNLD--IPILGLVKDDKHRTRG---IIYENDEIRLKVNTPLYRLLF 529

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +++E HRFAI  HRK  +K    S LD I  IG  RK+ L++ F T+  I ++S E L 
Sbjct: 530 AIQEETHRFAINYHRKLHEKNFKKSELDNIKLIGKKRKKALMKHFKTLDRIKKASVEELC 589

Query: 591 SIEGISKKIACKIYNHFHK 609
            ++G+++K A  I N+F +
Sbjct: 590 EVDGMNEKAAENIVNYFKQ 608


>gi|210621611|ref|ZP_03292724.1| hypothetical protein CLOHIR_00669 [Clostridium hiranonis DSM 13275]
 gi|210154676|gb|EEA85682.1| hypothetical protein CLOHIR_00669 [Clostridium hiranonis DSM 13275]
          Length = 607

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/625 (31%), Positives = 316/625 (50%), Gaps = 40/625 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            +Q+PE PGVY M D    V+YVGKA  L+ R++ Y  S+ NH+ ++  M+  I +  + 
Sbjct: 8   LKQLPEQPGVYIMKDAFDNVIYVGKAVVLKNRVRQYFQSSKNHSSKVKSMVKNIRSFEYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T +E EAL+LE N+IKR KP++N+LLRDDK++PYI +T     P + K R  +  +  Y
Sbjct: 68  ITDSETEALILECNLIKRYKPKYNVLLRDDKTYPYIKVTTNEDFPRVIKVRKVAKDKAKY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           FGP+ ++ AV  T+  ++ T+ +R+C    D   +++ RPCL + IK+C GPCTG++S E
Sbjct: 128 FGPYTNITAVNDTLEVIRDTYPIRTCKIDIDRAIKNKMRPCLNYHIKKCMGPCTGKVSKE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + E    LSG    L E +   M +      +E A ++RD++ +L  +       
Sbjct: 188 EYRQMIDEVIMCLSGKEEKLVEILTEKMQKCAADFRFEEAAVYRDKIKSLEEMVQKQKID 247

Query: 239 YN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
            N      D  ++    N AC+Q  F   G+  G   F L+   +S+   IL  F +QFY
Sbjct: 248 TNTLDLNQDIIAMARANNEACVQIFFVRNGKIVGREHFILEGVMDSSRESILGSFAKQFY 307

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
            ++   P+ I++ +E E+  +LE     + G KV I VP++GEK+ ++E    NA     
Sbjct: 308 MEQEYIPKEIIIEDEIEDQGILEDILTAKKGQKVVIRVPQKGEKKSLVEMVRKNALEYLE 367

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                           L++      L  +P RIE +D S+I G  ++G MVV       K
Sbjct: 368 KFSDMNKRKYEKSIGALEELKNLLELEELPIRIESFDISNIQGVDSIGSMVVYTNGKKDK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            +YR++ +    V   +D   M  +LERR                       + PD+++L
Sbjct: 428 KEYRRYKIKT--VIGPNDYDSMAEILERRIKH-------------------GNLPDLILL 466

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+ A + V  +  ++  I +  + K  K         + +   + L+    +  F
Sbjct: 467 DGGKGQVGAVRKVFDRYGID--IPLWGMYKDDKHRTKG---LINETREIELSKTSNLYRF 521

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +  +++E H +AIT HR  R KK   S LD I G+G  RK+ LL  F T++ I  ++ E 
Sbjct: 522 VAGIQEEVHNYAITYHRSLRDKKLTKSELDNIPGVGDKRKKALLAKFKTLEGIKNATLEE 581

Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613
           L   E ++  +A K+Y+ F +    
Sbjct: 582 LEDTETMNSTVAEKVYDFFREKEQG 606


>gi|86143737|ref|ZP_01062113.1| excinuclease ABC, C subunit [Leeuwenhoekiella blandensis MED217]
 gi|85829780|gb|EAQ48242.1| excinuclease ABC, C subunit [Leeuwenhoekiella blandensis MED217]
          Length = 601

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 174/629 (27%), Positives = 299/629 (47%), Gaps = 52/629 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVYQ  D  G++LYVGKA NL+KR+ SY +  +   R   ++ +I  I+ 
Sbjct: 8   IQLKTLPSSPGVYQYYDKKGKLLYVGKAKNLKKRVSSYFNKKHDNARTHMLVKKIVTIKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +E +ALLLE NMIK  +P++N++L+DDKS+P+I I    + P ++  R        
Sbjct: 68  IVVNSETDALLLENNMIKNYQPKYNVMLKDDKSYPWICI-KNERFPRVFPTRRLIKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175
           Y+GP+ S+  V   ++ ++  + LR+C   + +      + + CL + +  C GPC  +I
Sbjct: 127 YYGPYTSMKTVHTLLDLIKGLYPLRTCNYDLSKEKIESGKYKVCLEYHLGNCLGPCEDKI 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S++ Y + +   +  + G   +   +    M       ++E A   ++++  L   Q  +
Sbjct: 187 SAKTYHDNIDAIRDIVKGNFKDSLHRFRSQMKAHAEAMEFEDAQRIKEKIEVLEGYQAKS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  N +D FS+  ++    +       G    + T  LK   + ++A++L+  + +
Sbjct: 247 TVVNPSINNVDVFSIVSDEGYGYVNFLQLSHGAIIRSHTLELKKKLDESDAELLAIGIIE 306

Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                      I +  + +                +++TVPK G+K++I+E +  NA   
Sbjct: 307 IRQRFNSQSSEIYVPFDLDLGD------------GIRVTVPKLGDKKRIVELSERNAKYF 354

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
             ++         +     ++        L   P+ IE +DNS+I G + V   VV  + 
Sbjct: 355 RMERFKQTKIVDPDRHVNRLMAQMKSDLRLSVEPRHIECFDNSNIQGTNPVAACVVFKDG 414

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YRKFN+    V   DD A M  V+ RR+ +L+  +E L              P 
Sbjct: 415 KPSKKDYRKFNIKT--VTGPDDFASMEEVVFRRYRRLLNEDEPL--------------PQ 458

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQLS+    L+ L +  +I II IAK  +     E F+      L L+ +  
Sbjct: 459 LIIVDGGKGQLSSGVKALEALGLRGKIAIIGIAKRLE-----ELFYPGDSIPLYLDKKSE 513

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LR+EAHRF IT HR +R K A  + L+ I GIG      LL+ F +V  + ++
Sbjct: 514 TLKVIQQLRNEAHRFGITFHRNQRSKAAINTELETIPGIGEKTVIELLRHFRSVSKVKKA 573

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSH 613
           S   L+ +  I    A  I NH+ ++ + 
Sbjct: 574 SAAALSEV--IGPAKAKIIINHYQQSANE 600


>gi|315656605|ref|ZP_07909492.1| excinuclease ABC subunit C [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492560|gb|EFU82164.1| excinuclease ABC subunit C [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 693

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 187/690 (27%), Positives = 307/690 (44%), Gaps = 85/690 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + ++P  PGVY+  D   RV+YVGKA NL+ R+ SY         R   M++   ++ +
Sbjct: 8   KASEIPTQPGVYRWRDERNRVIYVGKAKNLRNRLTSYFVDPARLHPRTAKMVATAASVSW 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +EVEAL LE   IK   P+FN++ +DDKS+PY  +T   + P +   R +      
Sbjct: 68  VVVGSEVEALTLEYTWIKEHDPKFNVMFKDDKSYPYFAVTMNQEYPRMGVLRTAHQRGVR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+ +V A+ +T++ LQ  F +R+C+D VF       R CLL  I RC+ PC G +S+
Sbjct: 128 YFGPYTAVWAIRQTLDLLQTVFPVRTCSDGVFARAQAANRACLLGYIGRCAAPCIGRVSA 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            ++ E   +   F+SG +     +I   M        +E A   RD+L AL  +   N +
Sbjct: 188 AQHRELAEKVCDFMSGRDAGFLREIETAMWDDAQAYRFEEAARKRDQLEALRKVLEKNAA 247

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D F+L  ++    +Q  +   G+ RG   +    + +     +++  L Q Y
Sbjct: 248 VLSDDTDADLFALEADELQVSVQVFYVRAGRIRGQRGWVSAREEDLDEPSLMARALEQIY 307

Query: 295 TDKP------------------------------CPENILLSEEAEETSLLEISFFKQYG 324
            +                                 P+ IL+S    +  +L+       G
Sbjct: 308 GEAAADFAHEGGVARPRRVGPSSANDTAHFDTSVIPKEILVSVSPADVGMLQRWLGALRG 367

Query: 325 YKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380
            +V I VP++G KR+ + +  +NA        T++        + L D  +   +     
Sbjct: 368 SQVSIRVPQRGAKREALSRVQLNAVEGLRLYKTRRARDLTQRNLALNDLGRLLEIDPPL- 426

Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRF 439
           RIE YD SH  G   +G MVV  +    K+ YRKF++   D     DD   M  VL RRF
Sbjct: 427 RIECYDISHTQGTFQMGSMVVFEDGAPRKDAYRKFSIRGEDGTGTPDDTTAMNEVLRRRF 486

Query: 440 SQLIKNEEN-----------------------------------LNFHPKKQEYSFPSWP 464
            +LI+ E                                          +++   F   P
Sbjct: 487 ERLIQEENGQSSAQSEPNATTTARGTDLVETKHPSPQTTPSVALPPLGTEREPRRFSYRP 546

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D+V++DG   Q+ AA+  + ++ V + I +I +AK  +     E + V     ++     
Sbjct: 547 DLVVVDGALPQVHAARAAMDEVGVWD-IPVIGLAKRLE-----EVWRVDDDFPVIFPRTS 600

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             LY +Q LRDE+HRFAI+ HR++R +    S LD   G+GP +++ LL+ FG+VK +  
Sbjct: 601 EALYLLQYLRDESHRFAISAHRQKRARAMTRSILDAAPGVGPAKQKALLRHFGSVKRLRE 660

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +S   +A + G   K A  +    + + + 
Sbjct: 661 ASAAEIAEVPGFGLKSAENLVAFLNNSGNS 690


>gi|253751548|ref|YP_003024689.1| UvrABC system protein C [Streptococcus suis SC84]
 gi|251815837|emb|CAZ51445.1| UvrABC system protein C [Streptococcus suis SC84]
          Length = 594

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 174/614 (28%), Positives = 299/614 (48%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   +  G+++YVGKA NL+ R++SY    + T +   ++++I +  F 
Sbjct: 8   KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+  KPR+NI+L+DDKS+P+I IT K + P L   R      G Y
Sbjct: 67  VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +T+  L+R +  R C     ++    CL + + +C        S   Y 
Sbjct: 126 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           +   E  +FL+G +  + +++   M  A    ++E A  +RD L ++S ++     + + 
Sbjct: 182 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 241

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ ++ ++  +   K          P++GEK+++I  A  NA     +    
Sbjct: 302 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 355 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +    N V+  DD A MR VL+RR+S+++++                + PD++I+DGG+G
Sbjct: 414 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 458 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAI  HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +A   
Sbjct: 516 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGSIQSASLQEIAEA- 574

Query: 594 GISKKIACKIYNHF 607
           G+  K+A K+    
Sbjct: 575 GVPYKVAEKVKESL 588


>gi|124025708|ref|YP_001014824.1| excinuclease ABC subunit C [Prochlorococcus marinus str. NATL1A]
 gi|189038073|sp|A2C249|UVRC_PROM1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|123960776|gb|ABM75559.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str.
           NATL1A]
          Length = 640

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 199/631 (31%), Positives = 317/631 (50%), Gaps = 29/631 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61
            + +P  PG Y M D   R+LYVGK+  L+ R++SY  S N  + RI+ M+ Q+ +I   
Sbjct: 17  LKDIPNDPGCYLMKDGEDRLLYVGKSKKLRNRVRSYFRSGNELSPRISLMVRQVADIELI 76

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI--QG 119
           VT  E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT   K P ++  R       + 
Sbjct: 77  VTDNESEALTLESNLIKSHQPYFNVLLKDDKKYPYVCITWGDKYPRIFLTRKRRQRQLKD 136

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+  V  + KT+ S+++ F LR     +++ RT  CL + I RC G C  EISSE 
Sbjct: 137 KYYGPYVDVYLLRKTLFSIKKLFPLRQRRIPLYKDRT--CLNYSIGRCPGVCQEEISSED 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   +   +    G    L+  + + M   +    +E A   RD+L  +  +      I 
Sbjct: 195 YKNTLKRVEMIFQGRTDELRILLEKQMISFSESLKFEEAGSVRDQLKGIDRLYESQKMII 254

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++   +N++ +Q      G+  G   +F    + ++ +QIL   +   Y+
Sbjct: 255 PDSSVCRDIIAMASEENISSVQIFQMRSGKLIGRLGYFSDNSNFNS-SQILQQVIENHYS 313

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
           +      P  IL+  +     L+     +    KV I VPK+  K +II+    NA+   
Sbjct: 314 NVDPVEIPSEILVQHQLVNNILISDWLSEIKKQKVNINVPKRSRKAEIIKLVEKNANLEL 373

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +   +   + + L D T    L +IPKRIE YD SHI G  AV   VV  +    +  Y
Sbjct: 374 QRIKQSHDKNLVELDDLTNILDLENIPKRIECYDISHIQGSDAVASQVVFIDGIAARQHY 433

Query: 413 RKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEEN--------LNFHPKKQEYSFPS 462
           R++ +   ++K    DD   M  V+ RRF +  + +E          N        +   
Sbjct: 434 RRYKIKSPNIKIGHSDDFESMAEVITRRFRRWARFKEEGGDINALLSNQSSVLDNLNLND 493

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPD+V++DGGKGQLS+    L++L ++  + +IS+AK  +     E F     ++LV   
Sbjct: 494 WPDLVVIDGGKGQLSSVVAALEELKLDQNLNVISLAKKKE-----EVFIPNVKQSLVTES 548

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
             P +  ++RLRDEAHRFAIT HR++R  +   S L+EI G+GP R +LLL+ F +++ I
Sbjct: 549 NQPGMLLLRRLRDEAHRFAITFHRQKRSQRMKRSQLNEIPGLGPQRIKLLLEHFRSIEAI 608

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             ++   L+S  G+ +  A  I N+FH + +
Sbjct: 609 QMATFSELSSTPGLGRSTAVVIRNYFHPDKN 639


>gi|292558195|gb|ADE31196.1| excinuclease ABC, subunit C [Streptococcus suis GZ1]
          Length = 622

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 174/614 (28%), Positives = 299/614 (48%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   +  G+++YVGKA NL+ R++SY    + T +   ++++I +  F 
Sbjct: 36  KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 94

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+  KPR+NI+L+DDKS+P+I IT K + P L   R      G Y
Sbjct: 95  VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +T+  L+R +  R C     ++    CL + + +C        S   Y 
Sbjct: 154 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 209

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           +   E  +FL+G +  + +++   M  A    ++E A  +RD L ++S ++     + + 
Sbjct: 210 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 269

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 270 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 329

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ ++ ++  +   K          P++GEK+++I  A  NA     +    
Sbjct: 330 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 382

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 383 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 441

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +    N V+  DD A MR VL+RR+S+++++                + PD++I+DGG+G
Sbjct: 442 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 485

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 486 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 543

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAI  HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +A   
Sbjct: 544 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGNIQSASLQEIAEA- 602

Query: 594 GISKKIACKIYNHF 607
           G+  K+A K+    
Sbjct: 603 GVPYKVAEKVKESL 616


>gi|78212893|ref|YP_381672.1| excinuclease ABC subunit C [Synechococcus sp. CC9605]
 gi|119367855|sp|Q3AJW5|UVRC_SYNSC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78197352|gb|ABB35117.1| excinuclease ABC, C subunit [Synechococcus sp. CC9605]
          Length = 661

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 188/633 (29%), Positives = 300/633 (47%), Gaps = 29/633 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            +++P  PG Y M D   R+LYVGK+  L+ R++SY  S +  + RI  M  Q+  I F 
Sbjct: 20  LKEIPAEPGCYLMRDCDDRILYVGKSKALRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 79

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT +E EAL+LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 80  VTDSEAEALVLESNLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 139

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R F LR     ++  RT  CL + I RC G C  +ISS  
Sbjct: 140 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPMYPDRT--CLNYSIGRCPGVCQEKISSVD 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   + +      G +  L+  +   M +   + DYESA   RD+L  L  +        
Sbjct: 198 YHRTLRKVAMVFQGRSDELQHLLQEQMERYAERMDYESAARVRDQLQGLDQLTADQKMSL 257

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  ++ LA +Q      G+  G   +     S      IL   + + Y+
Sbjct: 258 PDSSVSRDVLALAFDERLAAVQLFQMRAGKLVGRLGYTAD-ASGLEPGLILQRVIEEHYS 316

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+     +  L+E    +Q   +V+I  P++ +K  +IE    NA    
Sbjct: 317 QVDSVEVPPELLVQHALPQQKLMEDWLTEQRERRVQIHCPQRQQKADLIELVQRNAEFEL 376

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +    +    +  +D  +   LP  P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 377 LRAKQGQEKQSLATEDLAQLLELPTPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 436

Query: 413 RKFNLHPNDV---KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK-------QEYSFPS 462
           RK+ +  + +    + D  AM  ++  R         E ++    +       Q      
Sbjct: 437 RKYKIRSSSIRAGHSDDFMAMAEIMRRRFRRWARAKAEGMDVGALRHKGGSALQTDGLND 496

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPDVV++DGGKGQLSA    L++L++   + + S+AK  +     E F   + + L    
Sbjct: 497 WPDVVMIDGGKGQLSAVMEALRELDLHEDLNVCSLAKQRE-----EVFLPGESQPLESEP 551

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA++ HR++R  +   S L +I G+GP R + LL  F ++  I
Sbjct: 552 DQLGVVLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGVGPKRVKDLLAHFHSIDAI 611

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             +S ETL+   G+   +A  I++ FH +   T
Sbjct: 612 QLASIETLSKAPGVGPALARDIHDFFHPSDEGT 644


>gi|303235299|ref|ZP_07321917.1| excinuclease ABC, C subunit [Finegoldia magna BVS033A4]
 gi|302493613|gb|EFL53401.1| excinuclease ABC, C subunit [Finegoldia magna BVS033A4]
          Length = 608

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/619 (31%), Positives = 318/619 (51%), Gaps = 28/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P  PGVY M D    ++YVGKA +L++R+  Y  S+    ++  M+S +    + 
Sbjct: 7   ELQKVPHKPGVYIMHDKNDEIIYVGKAIDLRRRVGQYFDSSKKLAKVAAMVSHVEYFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E EAL+LE+N+IK+  P++NI+LRDDK +PYI IT+  K P + K R     +  Y
Sbjct: 67  IVNNECEALVLESNLIKKNSPKYNIVLRDDKQYPYIKITN-EKFPRVLKTRRVLKDKAKY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179
           FGPF +  AV   I+ +  T+ +R+C  +  + +   RPCL + I RC G C  +++ E 
Sbjct: 126 FGPFPNAYAVNDIIDLIHETYKIRTCNLNFDKGQKLKRPCLNYYINRCDGMCVYDVNEED 185

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + E + FL+G    L +K+   M  A+   ++E A   RD +A +  I    +   
Sbjct: 186 YNKELLEVENFLNGREDELTKKLTDKMMAASKNLNFELAAKLRDSIANIQVILEKQNITN 245

Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            +    D  S+       C+Q  F   G+      F +    E +N  I+  F +QFY D
Sbjct: 246 TKGLDLDMISMAREAETVCVQVFFMRNGKIIERQHFIIDNKYEESNEHIVGEFFKQFYID 305

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----S 351
               P+ IL   E E+  L+E    ++ G KV+I +PK+G K  ++E   +NA       
Sbjct: 306 LTYVPKQILTDIEIEDRELIEEMLTEKKGSKVEIKIPKRGNKTDLLEMVRVNAKEGLDKY 365

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
            ++ L  E + +  + D      +  I  RIE YD S+  G  +VG M+V          
Sbjct: 366 ISRHLKRERNRENAILDLQDITGVKPID-RIECYDISNTSGVDSVGSMIVFKNGAKSSKD 424

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF +    V+  DD A  R VL RRF +L+ +++        ++ SF   P ++++DG
Sbjct: 425 YRKFKIKT--VEGADDYASHREVLTRRFRRLLDSDK--------KDNSFDEMPSIILMDG 474

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQ++ A+ VL + N++  I I+ + K  K         + + E + L +  P+   + 
Sbjct: 475 GKGQVNIAKEVLNEFNLD--IPILGLVKDDKHRTRG---IIYENEEIRLKVNTPLYRLLF 529

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +++E HRFAI  HRK  +K    S LD I  IG  RK+ L++ F T+  I ++S E L 
Sbjct: 530 AIQEETHRFAINYHRKLHEKNFKKSELDNIKLIGEKRKKALMKHFKTLDRIKKASVEELC 589

Query: 591 SIEGISKKIACKIYNHFHK 609
            ++G+++K A  I N+F +
Sbjct: 590 EVDGMNEKAAENIVNYFKQ 608


>gi|77407834|ref|ZP_00784587.1| excinuclease ABC, C subunit [Streptococcus agalactiae COH1]
 gi|77173581|gb|EAO76697.1| excinuclease ABC, C subunit [Streptococcus agalactiae COH1]
          Length = 583

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 171/611 (27%), Positives = 293/611 (47%), Gaps = 41/611 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y   D  G ++YVGKA NL+ R+KSY H +++T +   ++S+I +  + VT +
Sbjct: 2   LPDSPGCYLHKDKNGTIIYVGKAKNLKNRVKSYFHGSHNT-KTELLVSEIEDFEYIVTTS 60

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EALLLE N+I+   P++NI L+DDKS+PYI IT+  + P L   R      G+YFGP+
Sbjct: 61  NTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTYFGPY 119

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A  +    L R F  + C +       + C  + + +C+     + +   +     
Sbjct: 120 PDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWDSLRE 175

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           + K+FL+G ++ +   +   M  A +  ++E A  +RD + A+S ++     I+  M   
Sbjct: 176 DVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQDMKDR 235

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  + +K   C+Q  F   G+            +E     +         T    P+ 
Sbjct: 236 DVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHFLPKE 295

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           + + ++ +  S+  I          KI  P++GEK++++  A+ NA     +        
Sbjct: 296 VFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKD 348

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  +++      +P    RIE +DNS+I G S V  MVV       K  YRKF + 
Sbjct: 349 IRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGNPSKKDYRKFKIK 407

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S+++K+                + PD++++DGG+GQ++ 
Sbjct: 408 T--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQGQVNI 451

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ V+ +  +   I I  + K  K     E  F    E + L       + + R++DE H
Sbjct: 452 ARDVI-ENQLGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQDEVH 509

Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  E +    GI +
Sbjct: 510 RFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKADIEDIIM-CGIPR 568

Query: 598 KIACKIYNHFH 608
            +A  + +  +
Sbjct: 569 TVAESLRDSLN 579


>gi|319757980|gb|ADV69922.1| excinuclease ABC subunit C [Streptococcus suis JS14]
          Length = 610

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 174/614 (28%), Positives = 299/614 (48%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   +  G+++YVGKA NL+ R++SY    + T +   ++++I +  F 
Sbjct: 24  KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 82

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+  KPR+NI+L+DDKS+P+I IT K + P L   R      G Y
Sbjct: 83  VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 141

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +T+  L+R +  R C     ++    CL + + +C        S   Y 
Sbjct: 142 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 197

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           +   E  +FL+G +  + +++   M  A    ++E A  +RD L ++S ++     + + 
Sbjct: 198 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 257

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 258 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 317

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ ++ ++  +   K          P++GEK+++I  A  NA     +    
Sbjct: 318 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 370

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 371 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 429

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +    N V+  DD A MR VL+RR+S+++++                + PD++I+DGG+G
Sbjct: 430 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 473

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 474 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 531

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAI  HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +A   
Sbjct: 532 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGNIQSASLQEIAEA- 590

Query: 594 GISKKIACKIYNHF 607
           G+  K+A K+    
Sbjct: 591 GVPYKVAEKVKESL 604


>gi|225870698|ref|YP_002746645.1| UvrABC system protein C [Streptococcus equi subsp. equi 4047]
 gi|254764944|sp|C0M890|UVRC_STRE4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|225700102|emb|CAW94194.1| UvrABC system protein C [Streptococcus equi subsp. equi 4047]
          Length = 594

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 169/614 (27%), Positives = 285/614 (46%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D AG ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPDSPGCYLHKDKAGTIIYVGKAKNLRNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-EPFPRLLITRQIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + V     + C  + + +C            + 
Sbjct: 126 FGPYPDAYTATEVKKLLDRIFPFKKCKNPV----NKVCFYYHLGQCQAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V + K+FL+G +  + + +   M +A+  +++E A  +RD ++ ++ ++     +   
Sbjct: 182 SLVADVKQFLNGKDDKIIDDLRSKMLEASHNQEFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  + +K   C+Q  F   G+            +E+    +             
Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEEDFLTYVGQFYSDQRHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + E  +ET +  I   +          P++GEK++++  A  NA     +    
Sbjct: 302 IPKEVFIPETIDETLVAAIVPARIVK-------PQRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      ++   +   +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDLRKTSGAIEHLGQLLGIEKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S++                     PD++I+DGG+G
Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVKHEG--------------LQAPDLIIVDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+ AA+ V+ +  +   I +  + K  K     E  F      + L       + + R++
Sbjct: 458 QVKAARDVI-EHQLGLSIPVAGLQKNDKHQT-HELLFGNPLAVVELPRNSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K A+S  LD I G+GP RK+LLL+ F ++  + ++S E +  + 
Sbjct: 516 DEVHRFAITFHRQVRSKNAFSSKLDHIAGLGPKRKQLLLKRFKSMTALEQASLEEIQQL- 574

Query: 594 GISKKIACKIYNHF 607
           GI K +A  +++H 
Sbjct: 575 GIPKTVAEALFDHL 588


>gi|312863575|ref|ZP_07723813.1| excinuclease ABC, C subunit [Streptococcus vestibularis F0396]
 gi|322516531|ref|ZP_08069447.1| excinuclease ABC subunit C [Streptococcus vestibularis ATCC 49124]
 gi|311101111|gb|EFQ59316.1| excinuclease ABC, C subunit [Streptococcus vestibularis F0396]
 gi|322124919|gb|EFX96339.1| excinuclease ABC subunit C [Streptococcus vestibularis ATCC 49124]
          Length = 594

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 175/617 (28%), Positives = 297/617 (48%), Gaps = 39/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPNNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+   P+FNI L+DDKS+P+I IT K   P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIQENMPKFNIRLKDDKSYPFIKIT-KEIYPRLLITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + I +C+       + + + 
Sbjct: 126 FGPYPDSGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCNAHTICHTTEDYWQ 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238
             V + K FL+G +  +  ++   M   + + ++E A  +RD + A+S ++         
Sbjct: 182 GLVEDVKNFLNGHDDKIVNQLKAKMTDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +         +   
Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYMGQFYLDSRHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I +  + ++ S+         G  VK+  P++GEKR+++  A  NA     +    
Sbjct: 302 KPKEIFIPGDIDQESVEA-----LVGDGVKVFKPQRGEKRQLVNLATKNARVSLTQKFDL 356

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   Q  +++  K   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 357 LEKDLAKTQGAIENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V+  DD A MR V+ RR+S++ ++                + PD++I+DGG+G
Sbjct: 416 YKIKT--VEGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIMDGGQG 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ VL+K  +   I +  + K  K     E  F      + L  +    + + R++
Sbjct: 460 QVNVAKDVLRK-ELNLSIPVAGLQKNDKHQT-NELLFGDPLRVIDLPRQSEEFFLLHRIQ 517

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD + G+GP RK+ LL+ F ++  I +++ E + ++ 
Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKYFKSMTAIQKATVEDIHAL- 576

Query: 594 GISKKIACKIYNHFHKN 610
           GI +K+A  + +  + N
Sbjct: 577 GIPEKVAEALLDKLNDN 593


>gi|237785564|ref|YP_002906269.1| excinuclease ABC subunit C [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758476|gb|ACR17726.1| excinuclease ABC, subunit C [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 705

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 193/687 (28%), Positives = 315/687 (45%), Gaps = 78/687 (11%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
           ++  +P  PGVY   D   RVLYVGKA NL+ R+ +Y  +  H   R   M+   + +R+
Sbjct: 10  AAGTIPTEPGVYTFRDPEDRVLYVGKAKNLRARLSNYFQTPEHLHPRTRQMVFAASQVRW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  +E EAL LE   IKR  PR+N++ RDDKS+P + ++ + +IP  + +R        
Sbjct: 70  TVVASEDEALNLEYTWIKRFNPRYNVVFRDDKSYPMLAVSQRERIPRAWVYRGPRRKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGPF  V AV +++ SL + F +R+C+  V+       RPCLL  I +CS PC G IS 
Sbjct: 130 YFGPFPKVWAVRESLESLTQVFPVRTCSKGVYHRHELLGRPCLLGYIDKCSAPCIGRISE 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E + + +       +G + ++ + +  +M  A  + ++E A   RD + A+  +      
Sbjct: 190 EDHRKLITGLCSVFAGNSRDIIKSLTADMEAAATELNFEKAAHLRDDIEAIKAVSEKQAI 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQ 292
           +       D   +  ++  A +Q      G+  G   + ++   DSE +   ++  FL Q
Sbjct: 250 VLPEDTDTDLIGVCADELEAAVQIFTVRRGRIHGQRAWVVERSGDSEDSIGALIREFLLQ 309

Query: 293 FYTD-------------------------KPCPENILLSEEAEETSLLEISFFKQYGYKV 327
           +Y+D                         +P P  +L+ EE E+ + +        G  V
Sbjct: 310 YYSDEVERAQETAEETTAVEGSRVLDDVRQPVPREVLVMEEPEDITQIGEYLSGLRGAHV 369

Query: 328 KITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHIPKRIE 383
            I VP++G+KR +++  + NA  S  Q          +    ++   +   +   P RIE
Sbjct: 370 DIRVPQRGDKRALMDTVVRNAAESLHQHKLRRTGDLTARSAAIEAIQENLGMAEPPLRIE 429

Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQL 442
             D SH+ G   V  +VV  +    K+ YR++ +     +   DD A ++ V+ RRF + 
Sbjct: 430 CTDISHLQGTDVVASLVVFEDGAPKKSDYRRYKIKEAAGEGHSDDVASIKEVVRRRFLRY 489

Query: 443 IKN-----------------------------EENLNFHPKKQEYSFPSWPDVVILDGGK 473
            K                              + N +         F   P + ++DGG 
Sbjct: 490 KKGSTEVPDDGAVADSIAAEESKLAPSEVAEVDTNADLADPSAAKRFAYSPQLFVVDGGA 549

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q++AAQ VL +L + + +T+  IAK  +     E +   +   ++L  R   LY  Q +
Sbjct: 550 PQVNAAQEVLDELGITD-VTLCGIAKRLE-----EVWLPHEEFPVILPRRSEGLYLFQNI 603

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHR AIT  R RR  +   S LD I G+G  RK  LL++FG+V  I ++S + L + 
Sbjct: 604 RDEAHRVAITYQRSRRTGRLRQSELDNIAGLGEKRKADLLKTFGSVAQIKKASIDDLTTA 663

Query: 593 EGISKKIACKIYNHFHKNT---SHTPT 616
            GI   +A  +Y   H  +   S  PT
Sbjct: 664 NGIGPALAALVYEGLHGKSDQDSDGPT 690


>gi|189501493|ref|YP_001957210.1| excinuclease ABC subunit C [Candidatus Amoebophilus asiaticus 5a2]
 gi|189496934|gb|ACE05481.1| excinuclease ABC, C subunit [Candidatus Amoebophilus asiaticus 5a2]
          Length = 596

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 192/618 (31%), Positives = 310/618 (50%), Gaps = 48/618 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
           ++P  PGVY   +   +++YVGKA +L+KR+ SY + N   + +   M+ +I  I FT+ 
Sbjct: 13  KLPNQPGVYFFYNKQQQIIYVGKAKDLKKRVSSYFNKNQQDNLKTRRMVEEIAAISFTIV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EALLLE N+IKR +PR+NILL+DDKSFPYI IT + + P +   R      G Y+G
Sbjct: 73  NSEYEALLLENNLIKRFQPRYNILLKDDKSFPYICIT-RERFPKVITTRQPGAKLGQYYG 131

Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           PF  +  + + ++ ++  + LR+C      +++ +H+ + CL + I  C GPC G  + E
Sbjct: 132 PFTDLKNMYQILDLIKSLYTLRTCNYNLLEENICKHKFKVCLEYHIGHCKGPCEGLQTEE 191

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            Y + + + + FL G  + +K+     M+QA    DY++A  +++++AAL + Q+ +   
Sbjct: 192 AYNQDIQQIEHFLKGNINAVKKHFKEKMSQAAAAMDYKNAQAYKEKIAALENYQSKSLVV 251

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                 +D F++  +   A I       G    T    +K   E  +  IL   +  F  
Sbjct: 252 NPQVGNLDVFAIVSDAKAAFISYLQIKEGAIICTQNTEIKKQLEELDEDILPLIILHFRE 311

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351
                 + +L                    K  +TVP+ G+K+K++E A  N       +
Sbjct: 312 KYASNPSEILVNIP----------IATTFDKAMLTVPRIGDKKKLVELATKNVLFLKREA 361

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             ++   +      L        L  +P  IE +DNS+I G   V  MVV       K +
Sbjct: 362 LLRQEDNQNRANKTLVLLQHDLQLKDLPLHIECFDNSNIQGTHPVAAMVVFQHGKPAKKE 421

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR FN+    V   DD A MR ++ RR+ +LI+  + L              PD++++DG
Sbjct: 422 YRHFNIKT--VVGPDDFASMREIVTRRYRRLIEENQKL--------------PDLIVIDG 465

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQL AA   L++L +  +I II IAK  +     E +F +    + ++ + P L  +Q
Sbjct: 466 GKGQLGAAVAALQELGIYGQIPIIGIAKRLE-----EIYFPEDSYPIHISKQSPSLKLLQ 520

Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           ++R+EAHRFAIT HR +R K +  S L+ I G+G      LLQ FG+V+ I  +S + LA
Sbjct: 521 QIRNEAHRFAITFHRDKRSKTSLKSQLESIPGVGEKTITTLLQHFGSVQNIKEASLKALA 580

Query: 591 SIEGISKKIACKIYNHFH 608
           S   +  K A +I  H  
Sbjct: 581 S--QVGNKRAIQIKEHLK 596


>gi|146318403|ref|YP_001198115.1| excinuclease ABC subunit C [Streptococcus suis 05ZYH33]
 gi|145689209|gb|ABP89715.1| Nuclease subunit of the excinuclease complex [Streptococcus suis
           05ZYH33]
          Length = 622

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 174/614 (28%), Positives = 298/614 (48%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   +  G+++YVGKA NL+ R++SY    + T +   ++++I +  F 
Sbjct: 36  KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 94

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+  KPR+NI+L+DDKS+P+I IT K + P L   R      G Y
Sbjct: 95  VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +T+  L+R +  R C     ++    CL + + +C        S   Y 
Sbjct: 154 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 209

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           +   E  +FL+G +  + +++   M  A    ++E A  +RD L ++S ++     + + 
Sbjct: 210 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 269

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 270 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 329

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ ++ ++  +   K          P+ GEK+++I  A  NA     +    
Sbjct: 330 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQLGEKKQLINLATKNARVSLEQKFNL 382

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 383 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 441

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +    N V+  DD A MR VL+RR+S+++++                + PD++I+DGG+G
Sbjct: 442 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 485

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 486 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 543

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAI  HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +A   
Sbjct: 544 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGSIQSASLQEIAEA- 602

Query: 594 GISKKIACKIYNHF 607
           G+  K+A K+    
Sbjct: 603 GVPYKVAEKVKESL 616


>gi|302381054|ref|ZP_07269514.1| excinuclease ABC, C subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302311101|gb|EFK93122.1| excinuclease ABC, C subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 608

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 192/619 (31%), Positives = 318/619 (51%), Gaps = 28/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P  PGVY M D    ++YVGKA +L++R+  Y  S+    ++  M+S +    + 
Sbjct: 7   ELQKVPHKPGVYIMHDKNDEIIYVGKAIDLRRRVGQYFDSSKKLAKVAAMVSHVEYFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E EAL+LE+N+IK+  P++NI+LRDDK +PYI IT+  K P + K R     +  Y
Sbjct: 67  IVNNECEALVLESNLIKKNSPKYNIVLRDDKQYPYIKITN-EKFPRVLKTRRVLKDKAKY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179
           FGPF +  AV   I+ +  T+ +R+C  +  + +   RPCL + I RC G C  +++ E 
Sbjct: 126 FGPFPNAYAVNDIIDLIHETYKIRTCNLNFDKGQKLKRPCLNYYINRCDGMCVYDVNEED 185

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + E + FL+G    L +K+   M  A+   ++E A   RD +A +  I    +   
Sbjct: 186 YNKELLEVENFLNGREDELTKKLTDKMMAASKNLNFELAAKLRDSIANIQVILEKQNITN 245

Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                +D  S+       C+Q  F   G+      F +    E +N  I+  F +QFY D
Sbjct: 246 TKGLDLDMISMAREAETVCVQVFFMRNGKIIERQHFIIDNKYEESNEHIVGEFFKQFYID 305

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----S 351
               P+ IL   E E+  L+E    ++ G KV+I +PK+G K  ++E   +NA       
Sbjct: 306 LTYVPKQILTDIEIEDRDLIEEMLTEKKGSKVEIKIPKRGNKTDLLEMVRVNAKEGLDKY 365

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
            ++ L  E + +  + D      +  I  RIE YD S+  G  +VG M+V          
Sbjct: 366 ISRHLKRERNRENAILDLQDITGVKPID-RIECYDISNTSGVDSVGSMIVFKNGAKSSKD 424

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF +    V+  DD A  R VL RRF +L+ +++        ++ SF   P ++++DG
Sbjct: 425 YRKFKIKT--VEGADDYASHREVLTRRFRRLLDSDK--------KDNSFDEMPSIILMDG 474

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQ++ A+ VL + N++  I ++ + K  K         + + E + L +  P+   + 
Sbjct: 475 GKGQVNIAKEVLNEFNLD--IPVLGLVKDDKHRTRG---IIYENEEIRLKVNTPLYRLLF 529

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +++E HRFAI  HRK  +K    S LD I  IG  RK+ L++ F T+  I ++S E L 
Sbjct: 530 AIQEETHRFAINYHRKLHEKNFKKSELDNIALIGEKRKKALMKHFKTLDRIKKASVEELC 589

Query: 591 SIEGISKKIACKIYNHFHK 609
            ++G+++K A  I ++F +
Sbjct: 590 EVDGMNEKAAENIVDYFKQ 608


>gi|188587558|ref|YP_001922471.1| excinuclease ABC subunit C [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251777915|ref|ZP_04820835.1| excinuclease ABC, C subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188497839|gb|ACD50975.1| excinuclease ABC, C subunit [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243082230|gb|EES48120.1| excinuclease ABC, C subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 629

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 201/625 (32%), Positives = 338/625 (54%), Gaps = 19/625 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P+ PGVY M +  G V+YVGKA  L+ R++ Y   S NH+ ++  M+  I    +
Sbjct: 12  QLKILPDKPGVYLMKNSLGEVIYVGKAKILKNRVRQYFQNSKNHSEKVKAMVKNIAEFEY 71

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E+EAL+LE N+IK+  PR+NILL+DDK +P+I +T   + P ++  R  +     
Sbjct: 72  IITDSEMEALILECNLIKKYSPRYNILLKDDKFYPFIKVTINEEFPKIFITRKYAKDGNK 131

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ ++ +V +T+N +++ F +R+C  ++    + TRPCL + IK+C+ PC G IS +
Sbjct: 132 YFGPYTNIASVYETMNLIKKIFPIRTCKKAITEGGNPTRPCLNYHIKKCNAPCAGYISKD 191

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y   + E  + LSG N +L  K+ ++M  A+   ++E A   RD++ A+++I       
Sbjct: 192 DYRNMISEVMELLSGKNKDLVNKLQKDMEYASQNLEFEKAASLRDKIIAINNIVEKQKIF 251

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +LY ++   C+Q  F   G+  G   F L+  +    + ILS F+  FY 
Sbjct: 252 KSQEGDEDFINLYKDEKDCCVQVFFLRDGKVTGREHFILENSTYQEESSILSQFMISFYG 311

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
             P     +   + ++T +LE     + G KV + VPK G K++++E    NA     + 
Sbjct: 312 GTPKVPKHIYIPKEQDTEILEEFLKIKRGSKVNVKVPKIGSKKEMLELVRNNAKLTLEQF 371

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + L  +  +   L++  +   L  IP RIE +D S+I G  +VG M+V        + 
Sbjct: 372 KEKLLMDKKINIGCLEELKELLNLDDIPNRIESFDISNIQGVDSVGSMIVFENGKAKNSD 431

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN-EENLNFHPKKQEYSFPSWPDVVILD 470
           YR+F +   +VK  ++   MR +LERRF+  +K  +E    + K     F ++PD++++D
Sbjct: 432 YRRFGIK--NVKNGNEYDSMREILERRFTHGLKEVKEIQERNLKFSNGKFSNFPDLIMMD 489

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ++ A+ VL KL++  +I I  + K    S     +  ++      N    ++ FI
Sbjct: 490 GGKGQVNVAKEVLNKLDI--QIPICGLVKDDHHSTRGIIYNNEEIII---NRSSNLMQFI 544

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           +R++DE HRFAIT HR  R K+  +S L++I  +G  R+R LL  FG+V+ I  +  E L
Sbjct: 545 RRVQDEVHRFAITYHRSLRDKRTLHSILEDIPNVGEKRRRALLMKFGSVENIKNAKLEEL 604

Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614
              E I  K A  I ++F K+  ++
Sbjct: 605 LLTESIDNKAANSIISYFKKHEHNS 629


>gi|114776451|ref|ZP_01451496.1| excinuclease ABC subunit C [Mariprofundus ferrooxydans PV-1]
 gi|114553281|gb|EAU55679.1| excinuclease ABC subunit C [Mariprofundus ferrooxydans PV-1]
          Length = 611

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 199/623 (31%), Positives = 317/623 (50%), Gaps = 32/623 (5%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           ++   +P  PGVY+MLD A +V+YVGKA NL+KR+ SY      + R   M+ Q+ +I F
Sbjct: 7   IALTALPREPGVYRMLDHARKVIYVGKARNLRKRVSSYFQRQPESPRTIAMVRQVRDIAF 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           +VT +E EAL+LE N+IK+LKPR+N+L++D K++PYIL++     P L  +R + T+ G 
Sbjct: 67  SVTPSEAEALVLEHNLIKQLKPRYNVLMKDSKTYPYILLS-DEPFPKLTMYRGNRTLPGE 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF +  AV +T++ +Q  F LR C D+VF +R+RPC+  QI RCS PC   +S  +Y
Sbjct: 126 YFGPFPNAGAVHQTLHIMQSMFLLRDCEDAVFNNRSRPCMQHQIGRCSAPCCDIVSKAQY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI--QNHNDSI 238
              V E ++FL G +++L +   + M QA     +E A I RDR+ AL  +   +    +
Sbjct: 186 RRQVDEVRQFLRGRDNDLLKGWEQQMQQAADAMQFEQAAILRDRIRALRSVLAGSEGGDL 245

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            +  D   L  +             G++ GT    +   +++   +IL   L + Y  + 
Sbjct: 246 PDDADGIVLIRHTTAVLACIGVRRSGRDLGTHNIRIDQATDAGELEILQSLLIERYEKEL 305

Query: 299 CPENILLSEEAEE-TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
            P +IL++   E    L  +    + G K  +  P +G + + ++Q   +   +      
Sbjct: 306 PPADILVNTCKENIQELNRLIALIKPGKKTAVHSPVRGSRLQWLQQIGHSG--AQIIASR 363

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + S Q       +  A+  +P+RI   DN+H+ G   V  +   G  G  K+ YR++ L
Sbjct: 364 KQESQQPAFAALAEMLAMEVVPERIAAVDNAHLGGTQMVAAITYAGWQGAEKDYYRRYKL 423

Query: 418 HP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
                 V   DD   M+ VLER F  + ++                  PD++++DGG+GQ
Sbjct: 424 DGIAGQVIEGDDYGAMQAVLERFFRAIRED--------------TIPCPDLMLIDGGRGQ 469

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV--------KKGEALVLNMRDPIL 527
           L  A        +   + +  +AKG  R  G E  +           G+ L        L
Sbjct: 470 LGVALQCATDAGLH-ELKLAGVAKGDARRVGEETIWPGWTDSGAIGIGKPLKPGRHSAAL 528

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             I R+RDEAHRFA    RKR+K++ + S LD + GIGP ++  LL+ FG ++ + ++  
Sbjct: 529 LLIARVRDEAHRFAGAYMRKRKKQSMFTSVLDTVEGIGPAKRISLLKHFGGIEGVKKAGR 588

Query: 587 ETLASIEGISKKIACKIYNHFHK 609
           + LA   GIS K+A KI+   HK
Sbjct: 589 KQLAQAPGISDKLAEKIFLSLHK 611


>gi|319952741|ref|YP_004164008.1| uvrabc system protein c [Cellulophaga algicola DSM 14237]
 gi|319421401|gb|ADV48510.1| UvrABC system protein C [Cellulophaga algicola DSM 14237]
          Length = 595

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/623 (29%), Positives = 298/623 (47%), Gaps = 50/623 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +P  PGVYQ  D   ++LYVGKA NL+KR+ SY   N+   +   ++ +I +I+ 
Sbjct: 8   LQLSTLPNNPGVYQFYDAEDKILYVGKAKNLKKRVSSYFTKNHEIGKTRVLVKKIRSIKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ +PR+N+LL+DDKS+P+I I    + P ++  R        
Sbjct: 68  IVVPTESDALLLENNLIKKYQPRYNVLLKDDKSYPWICI-KNERFPRIFPTRRHIKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S+  V+  ++ ++  + LR+C   + +      + + CL + +K C GPC    
Sbjct: 127 YFGPYTSMKTVKTLLDLIKSVYPLRTCNYDLSKEKIESGKYKVCLEYHLKNCKGPCEDYQ 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
             E+Y   + E ++ L G   +  +     M     +  +E A   ++++A L + Q   
Sbjct: 187 DVEEYHRQIQEIREILKGNFKSSLQYFKNQMKIFAEEMRFEEAQDIKEKVAVLENYQVRT 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  N +D FS+  +++ A +       G    + T  +K   +  +  +L+  + +
Sbjct: 247 TIVNPKINNVDVFSIISDESFAYVNYLQLSHGSIIRSHTLEIKKKLDELDVDLLAMAIVE 306

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR-- 350
                      +                      VKIT+PK G+K++I+E +  NA    
Sbjct: 307 IRQRFKSLTKEIYVPFLVAVE-----------QDVKITIPKLGDKKRILELSERNAKLQR 355

Query: 351 ----SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
               +  + +  +     ++    K   L   P+ IE +DNS+I G + V   VV  +  
Sbjct: 356 QERFNQIKIMDPDRHTNRLMAQMKKDLRLSGEPRHIECFDNSNIQGTNPVAACVVFKDGK 415

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K +YR +N+    V   DD A M  V+ RR+ +L++  + L              P +
Sbjct: 416 PSKKEYRHYNIKT--VDGPDDFASMEEVVFRRYKRLLEEGDPL--------------PQL 459

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGGKGQLS+A   L  L +  +I II IAK  +     E +F      L L+ +   
Sbjct: 460 IVIDGGKGQLSSALKSLDLLGLRGKIAIIGIAKRLE-----EIYFPGDSIPLYLDKKSES 514

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ LR+EAHRF IT HR +R   A  S L+ I GIG      LL+ F +VK I  +S
Sbjct: 515 LKVIQFLRNEAHRFGITFHRNKRSAGAISSELETIEGIGGKTIEDLLKKFKSVKRIKEAS 574

Query: 586 PETLASIEGISKKIACKIYNHFH 608
            E LA   G+++  A KIY +FH
Sbjct: 575 LEHLAETIGMAR--AKKIYENFH 595


>gi|77412313|ref|ZP_00788627.1| excinuclease ABC, C subunit [Streptococcus agalactiae CJB111]
 gi|77161632|gb|EAO72629.1| excinuclease ABC, C subunit [Streptococcus agalactiae CJB111]
          Length = 593

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 172/615 (27%), Positives = 294/615 (47%), Gaps = 41/615 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R+KSY H +++T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVKSYFHGSHNT-KTELLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+PYI IT+  + P L   R      G+Y
Sbjct: 67  VTTSNTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C+     + +   + 
Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
               + K+FL+G ++ +   +   M  A +  ++E A  +RD + A+S ++     I+  
Sbjct: 182 SLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQD 241

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  + +K   C+Q  F   G+            +E     +         T   
Sbjct: 242 MKDRDVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + ++ +  S+  I          KI  P++GEK++++  A+ NA     +    
Sbjct: 302 LPKEVFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++      +P    RIE +DNS+I G S V  MVV       K  YRK
Sbjct: 355 LEKDIRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K+                + PD++++DGG+G
Sbjct: 414 FKIKT--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 458 QVNIARDVI-ENQLGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  E +    
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLSSIQKADIEDIIM-C 574

Query: 594 GISKKIACKIYNHFH 608
           GI + +A  + +  +
Sbjct: 575 GIPRNVAESLRDSLN 589


>gi|329115884|ref|ZP_08244601.1| excinuclease ABC, C subunit [Streptococcus parauberis NCFD 2020]
 gi|326906289|gb|EGE53203.1| excinuclease ABC, C subunit [Streptococcus parauberis NCFD 2020]
          Length = 592

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 170/616 (27%), Positives = 289/616 (46%), Gaps = 41/616 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   +  G+++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPDSPGCYLHKNKDGKIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   PR+NI L+DDKS+P+I IT++H  P L   R      G Y
Sbjct: 67  VTGSNTEALLLEINLIQENMPRYNIKLKDDKSYPFIKITNEH-FPRLLITRQIRKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + V     + C  + I +C+     +     + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCTNPV----NKVCFYYHIGQCNAHTICQTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V + K FL+G +  + + + R M  A+ + ++E A  +RD ++ ++ ++     +   
Sbjct: 182 GLVEDVKLFLNGKDDKIIDGLKRKMKTASEELEFERAAEYRDLISGIATLRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y  K   C+Q  F   G+            +E  +  +             
Sbjct: 242 LMDRDIFGYYVEKGWMCVQVFFVRQGKLIQRDVNMFPYYNEEEDDFLTYMGQFYQDKRHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + +    +   +  I   K          P++GEK++++  A  NA     +    
Sbjct: 302 LPKEVFIPANIDHELVEAIVPSKIIK-------PQRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   +  + +  +  A+P    RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDLKKTKGAIDNLGELMAIPTP-IRIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S++ K+                  PD++I+DGG+G
Sbjct: 414 FKIKT--VTGPDDYASMREVISRRYSRVQKDN--------------LQAPDLIIIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++   +   I +  + K  K     E  F    E + L       + + R++
Sbjct: 458 QVNIAKDVIQN-QLGLSIPVAGLQKNDKHQT-QELLFGDPLEVIDLPRNSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+ LL+ F  +  I  ++ + + ++ 
Sbjct: 516 DEVHRFAITFHRQVRSKNSFSSKLDNIEGLGPKRKQTLLKHFKNMTAIGNATVDEIRAL- 574

Query: 594 GISKKIACKIYNHFHK 609
           GI +K+A  +   F++
Sbjct: 575 GIPEKVAENLLASFNQ 590


>gi|304406620|ref|ZP_07388275.1| excinuclease ABC, C subunit [Paenibacillus curdlanolyticus YK9]
 gi|304344153|gb|EFM09992.1| excinuclease ABC, C subunit [Paenibacillus curdlanolyticus YK9]
          Length = 677

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 188/674 (27%), Positives = 301/674 (44%), Gaps = 92/674 (13%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +  G ++YVGKA  L+ R++SY + + H  +   ++S+I ++ + VT +
Sbjct: 24  LPDAPGCYLMKNGEGTIIYVGKAKVLKNRVRSYFNGS-HNGKTQRLVSEIRDLEYIVTGS 82

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+  PR+N+LL+DDK+FPYI IT+  + P L   R     +  YFGP+
Sbjct: 83  NMEALILECNLIKQYHPRYNVLLKDDKTFPYIKITN-ERHPKLEVTRRVLKDKAKYFGPY 141

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++T   L R + LR C         + CL + I +C  PC  ++   +Y   V 
Sbjct: 142 PNAFAAQQTKKLLDRLYPLRKCNTLP----DKVCLYYHIGQCIAPCEFDVEQSEYDRMVS 197

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           +  KFL+GG   +K ++ R M +A    ++E A  +RD++ A+  I              
Sbjct: 198 DITKFLNGGQDEVKSELQRKMEEAAESLEFERAKEYRDQIIAIEAIVEKQKITMADAVDR 257

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPE 301
           D F    +K   C+Q  +   G+     +       E         F+ Q+Y+D P  P 
Sbjct: 258 DVFGYAVDKGWMCVQILYMRSGKMVERRSSSFPYYGE--AYDDFVTFVAQYYSDNPALPR 315

Query: 302 NILLSEEAEETSL----------------------------------------------- 314
            ILL E  EE  +                                               
Sbjct: 316 EILLPEPPEEMPVDVQEGETTASESASIPVQEERAAGSSRSGAQAESGELTGGTESDEEA 375

Query: 315 ------LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQM 364
                  ++    Q   KVK+ VP++  KR+++E A  NA              E     
Sbjct: 376 PAGSRADDVRESLQKWLKVKVFVPRRARKREVVEMACNNAKVALDEKFRLIERDEERSVK 435

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
             +       L  +  RIE +DNS+I G + V  MVV  +    + +YRK+ +    V  
Sbjct: 436 ASESLAGWLGLESVR-RIEAFDNSNIQGTNPVSAMVVFIDGKPERKEYRKYKVRT--VVG 492

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-L 483
            DD   MR V+ RR+ +++K                   PD++++DGGKGQ++ A  V  
Sbjct: 493 ADDYETMREVVRRRYERVLKEG--------------LEQPDLIVVDGGKGQIAVALDVLR 538

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
            +L +  +I +  + K  K             E + L       Y +QR++DE HRFAIT
Sbjct: 539 NELGL--QIPVCGLVKDAKHKTAQ-LMTGDPPEVVPLPRDSQEFYLLQRIQDEVHRFAIT 595

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HR++R K+   S LD I GIG  R++ LL+ FG++K I  +S E    +  I +K+A +
Sbjct: 596 FHREQRGKSMVASQLDAIPGIGEKRRKALLKHFGSLKKIREASVEDFKPL-SIGEKLAEQ 654

Query: 603 IYNHFHKNTSHTPT 616
           I     +      T
Sbjct: 655 ILAALREGEESAGT 668


>gi|14250931|emb|CAC39227.1| UvrC protein [Eubacterium acidaminophilum]
          Length = 607

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 191/616 (31%), Positives = 310/616 (50%), Gaps = 36/616 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVTC 64
           +P+ PGVY M D  G ++Y+GKA +L+ R++ Y  S+  +  ++  M+  I+   + +T 
Sbjct: 11  LPDSPGVYIMKDSTGDIIYIGKAKSLKNRVRQYFGSHGKSSPKVEAMVGNISEFEYIMTD 70

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E+EAL+LE N+IK+ +P++NI+ RDDK++P+I ++     P + K R        YFGP
Sbjct: 71  SELEALILECNLIKKHRPKYNIIFRDDKTYPFIKVSVNEDYPRVLKVRSMREDGAKYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCAD---SVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           + S  AV   I+ ++R + +R C +    + +   RPC+ + I +C+GPC G  + E+YM
Sbjct: 131 YTSEGAVNDVISLIRRIYPIRKCKNDIKRMIQRGERPCINYDIGKCTGPCRGIDAREQYM 190

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + + E   FLSG +  L E I + M  A  + D+E A   RD++ +L  +      +   
Sbjct: 191 QMIDEIVTFLSGRSETLIESIEQQMQVAAERLDFEKAAYFRDKIGSLRILAQRQKIVSKS 250

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DK 297
               D  + Y  +  ACIQ  F   G+  G   F ++   E    ++ + F++ FY+   
Sbjct: 251 SVDQDFIAAYFYEGKACIQVFFVREGRIIGREHFVVEDVLEEQKGEVFASFIKHFYSYQG 310

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--HTQK 355
             P  IL+  E  E  +L+       G KV I VP++GEKR++IE    NA  S      
Sbjct: 311 FIPSEILIESETGEDEVLQSWLESIKGRKVHIKVPQKGEKREMIEMVKKNARESAEKFSN 370

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           +S     Q +L++      L   P RIE +D S+I G  +VG MVV         +YR+F
Sbjct: 371 VSRLKDSQELLEELRSLLELEETPNRIEAFDISNIQGVDSVGSMVVFTRGRKDSKEYRRF 430

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    V+  DD + +  ++ RR  +                  +   PD++++DGG+GQ
Sbjct: 431 RIKT--VQGPDDYSSLYEIVLRRLKK------------------WSGRPDLMLIDGGRGQ 470

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           +     +L +L V+  I +  + K  K         V     + L     +  FI  ++D
Sbjct: 471 VGVVSRLLLELGVD--IPVWGMYKDDKHRTRG---LVSLEREIELKKSSQLYRFICTIQD 525

Query: 536 EAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI  HR  R  K   S LD+I G+G  RK LL+  F +V+ I  +  E L +I G
Sbjct: 526 EAHRFAIDYHRSLRHGKLKRSVLDDIAGVGEKRKLLLISHFRSVENIRNAKLEELKAISG 585

Query: 595 ISKKIACKIYNHFHKN 610
           IS ++A +IY  F + 
Sbjct: 586 ISAEVAERIYMFFREE 601


>gi|169824072|ref|YP_001691683.1| excinuclease ABC subunit C [Finegoldia magna ATCC 29328]
 gi|229558030|sp|B0S0L4|UVRC_FINM2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|167830877|dbj|BAG07793.1| excinuclease ABC subunit C [Finegoldia magna ATCC 29328]
          Length = 608

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 193/619 (31%), Positives = 317/619 (51%), Gaps = 28/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P  PGVY M D    ++YVGKA +L++R+  Y  S+    ++  M+S +    + 
Sbjct: 7   ELQKVPHKPGVYIMHDKNDEIIYVGKAIDLRRRVGQYFDSSKKLAKVAAMVSHVEYFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E EAL+LE+N+IK+  P++NI+LRDDK +PYI IT+  K P + K R     +  Y
Sbjct: 67  IVNNECEALVLESNLIKKNSPKYNIVLRDDKQYPYIKITN-EKFPRVLKTRRVLKDKAKY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEK 179
           FGPF +  AV   I+ +  T+ +R+C  +  + +   RPCL + I RC G C  +++ E 
Sbjct: 126 FGPFPNAYAVNDIIDLIHETYKIRTCNLNFDKGQKLKRPCLNYYINRCDGMCVYDVNEED 185

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + E + FL+G    L +K+   M  A+   ++E A   RD +  +  I    +   
Sbjct: 186 YNKELLEVENFLNGREDELTKKLTDKMMAASKNLNFELAAKLRDSITNIQVILEKQNITN 245

Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            +    D  S+       C+Q  F   G+      F +    E +N  I+  F +QFY D
Sbjct: 246 TKGLDLDMISMAREAETVCVQVFFMRNGKIIERQHFIIDNKYEESNEHIVGEFFKQFYID 305

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----S 351
               P+ IL   E E+  L+E    ++ G KV+I +PK+G K  ++E   +NA       
Sbjct: 306 LTYVPKQILTDIEIEDRDLIEEMLTEKKGSKVEIKIPKRGNKTDLLEMVRVNAKEGLDKY 365

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
            ++ L  E + +  + D      +  I  RIE YD S+  G  +VG M+V          
Sbjct: 366 ISRHLKRERNRENAILDLQDITGVKPID-RIECYDISNTSGVDSVGSMIVFKNGAKSSKD 424

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF +    V+  DD A  R VL RRF +L+ +++        ++ SF   P ++++DG
Sbjct: 425 YRKFKIKT--VEGADDYASHREVLTRRFRRLLDSDK--------KDNSFDEMPSIILMDG 474

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQ++ A+ VL + N++  I I+ + K  K         + + E + L +  P+   + 
Sbjct: 475 GKGQVNIAKEVLNEFNLD--IPILGLVKDDKHRTRG---IIYENEEIRLKVNTPLYRLLF 529

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +++E HRFAI  HRK  +K    S LD I  IG  RK+ L++ F T+  I ++S E L 
Sbjct: 530 AIQEETHRFAINYHRKLHEKNFKKSELDNIALIGEKRKKALMKHFKTLDRIKKASVEELC 589

Query: 591 SIEGISKKIACKIYNHFHK 609
            ++G+++K A  I N+F +
Sbjct: 590 EVDGMNEKAAENIVNYFKQ 608


>gi|21220438|ref|NP_626217.1| excinuclease ABC subunit C [Streptomyces coelicolor A3(2)]
 gi|8134800|sp|Q9Z512|UVRC_STRCO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|4468689|emb|CAB38143.1| ABC excision nuclease subunit C [Streptomyces coelicolor A3(2)]
          Length = 728

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 180/679 (26%), Positives = 305/679 (44%), Gaps = 72/679 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+ PGVY+  D   RV+YVGKA +L++R+ +Y     +   R   M++   ++ +TV 
Sbjct: 13  EIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAHLHPRTRTMVTTAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R        YFG
Sbjct: 73  STEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGQKKKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+  T++ L R F +R+C+  VF++     RPCLL  I +CS PC G I+ + +
Sbjct: 133 PYGHAWAIRDTVDLLLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRITPDDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            +   E   F++G       ++ R M +A  + +YE A   RD + AL      +  +  
Sbjct: 193 WDLADEFCDFMAGRTGTYLRRLERQMAEAAEEMEYERAARLRDDIGALKKAMEKSAVVLA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++  ++  A +Q      G+ RG   +      E T   ++ + L+Q Y ++
Sbjct: 253 DATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEITTGALVEHALQQLYGEE 312

Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ +L+    +    ++    ++ G  V + +P++G+K+ ++E    NA ++   
Sbjct: 313 KGDAVPKEVLVPALPDPVEPVQQWLAERRGSGVSLRIPQRGDKKALMETVQRNAQQALVL 372

Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             +   S        L++  +   L   P RIE YD SH+ G   V  MVV  +    K+
Sbjct: 373 HKTKRASDLTTRSRALEEIAEALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLARKS 432

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN---------LNFHPKKQEYSFP 461
           +YR+F +     + QDD   M  V+ RRF + +  +E          L    +       
Sbjct: 433 EYRRFQIKG--FEGQDDVRSMHEVITRRFRRYLAEKERTGEWADGEGLVDDARHPNGDAA 490

Query: 462 SWPDVVILDGGKGQLSAAQGVLKKL----NVENRITI----------------------- 494
              D    DG      AA+   + L     + +   +                       
Sbjct: 491 PNGDAAPNDGAAPDDGAARTDGRGLTDGQELTDGPALKDDDGRPKRFAYPPQLVVVDGGQ 550

Query: 495 -----------------ISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
                            I++    KR    E +  ++ + +VL      LY +QR+RDEA
Sbjct: 551 PQVAAAQRALDELGIDDIAVCGLAKRL--EEVWLPREDDPVVLPRTSEGLYLLQRVRDEA 608

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT  R +R K     PLD++ G+G  RK+ L++ FG+VK +  ++ + +  + GI 
Sbjct: 609 HRFAITYQRAKRAKRFRAGPLDDVPGLGETRKQALIKHFGSVKKLRSATIDQICEVPGIG 668

Query: 597 KKIACKIYNHFHKNTSHTP 615
           +K A  +     + T   P
Sbjct: 669 RKTAETVAVALARATPAAP 687


>gi|188586645|ref|YP_001918190.1| excinuclease ABC, C subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351332|gb|ACB85602.1| excinuclease ABC, C subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 685

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 205/653 (31%), Positives = 328/653 (50%), Gaps = 58/653 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M    GRV+YVGKA NL+ R++SY +S N   ++  M  +I++I   VT 
Sbjct: 12  NLPEKPGVYLMKSKQGRVIYVGKAINLKNRVRSYFNSGNKAVKVQVMTPKISDIETIVTD 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E+EAL+LE N+IK+ +P++N+ LRDDK++PY+ IT +   P L   R        YFGP
Sbjct: 72  SELEALILENNLIKKYRPKYNVSLRDDKNYPYLKITTEEDYPRLIIARRMGKHG-RYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           + +  AV +TI  L++ F +R+C     +++  RPCL + I RC  PC  ++S ++Y E 
Sbjct: 131 YPNAGAVRETIKLLRKLFPVRTCKGETPKNQGKRPCLNYFINRCLAPCNEKVSRDEYREM 190

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           + +    L G    L  ++ R MN A  + ++E A  +R++ AAL  I+     +  R +
Sbjct: 191 IQDIISVLEGKEEELLNELERKMNLAAEEMEFEKAAEYRNQKAALEKIRQKQKIVSERRE 250

Query: 244 CFSLYHNK---------------NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288
            + +                     AC+Q  +   G+  G   F + T +      +L+ 
Sbjct: 251 DYDIIALGFEEKIDDTSDTDDSTEEACVQIFYIRGGKLMGRNNFRVSTGALEGAEDMLTS 310

Query: 289 FLRQFYTDK-PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
           F++Q+Y      P+ IL+S    E  L+E    ++   KV++ VP++GEK +++  A+ N
Sbjct: 311 FIKQYYAQALHVPKQILVSHPLTEKELIESWLAEKREGKVEVKVPQRGEKYQLMNMAIKN 370

Query: 348 AHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
           A     Q+       +      LK+   K +L  IP R+E YD SH  G   V  MVV  
Sbjct: 371 AELELKQQELESEKERKMTEGALKELALKLSLSEIPFRVEGYDISHTQGEETVASMVVFE 430

Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------------- 447
                K  YRKF +        DD   M  VL RRF +  K E+                
Sbjct: 431 GGKSKKKDYRKFRIRTT--AGPDDFKAMEEVLRRRFHRAKKEEQEYLMAAETKQDSEYDA 488

Query: 448 -----------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496
                      N      + ++ F   PD++++DGGKGQLS+A  V++++    +I +IS
Sbjct: 489 REGNKDNISQYNSGTEYSEYDFKFAVLPDLIVIDGGKGQLSSAVKVMEEVGYS-QIPVIS 547

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YS 555
           +AK  +     E F  ++  +L        L  +QR+RDEAHRFA++ HRK R KA   S
Sbjct: 548 LAKREE-----EIFVPERSTSLKFPSNSEALKLLQRIRDEAHRFAVSYHRKSRGKATLTS 602

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            LDE+  IG  RK+ L + + ++  I ++S + LA++  ++KK A  +  +  
Sbjct: 603 LLDEVPEIGSRRKKELFEHYSSLNEIKQASIDELANLPSMNKKAAKNLVTYLK 655


>gi|298346942|ref|YP_003719629.1| excision endonuclease subunit UvrC [Mobiluncus curtisii ATCC 43063]
 gi|298237003|gb|ADI68135.1| excision endonuclease subunit UvrC [Mobiluncus curtisii ATCC 43063]
          Length = 693

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 186/690 (26%), Positives = 307/690 (44%), Gaps = 85/690 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + ++P  PGVY+  D   RV+YVGKA NL+ R+ SY         R   M++   ++ +
Sbjct: 8   KASEIPMQPGVYRWRDERNRVIYVGKAKNLRNRLTSYFVDPARLHPRTAKMVATAASVSW 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +EVEAL LE   IK   P+FN++ +DDKS+PY  +T   + P +   R +      
Sbjct: 68  VVVGSEVEALTLEYTWIKEHDPKFNVMFKDDKSYPYFAVTMNQEYPRMGVLRTAHQRGVR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+ +V A+ +T++ LQ  F +R+C+D VF       R CLL  I RC+ PC G +S+
Sbjct: 128 YFGPYTAVWAIRQTLDLLQTVFPVRTCSDGVFARAQAANRACLLGYIGRCAAPCIGRVSA 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            ++ E   +   F+SG +     +I   M        +E A   RD+L AL  +   N +
Sbjct: 188 AQHRELAEKVCDFMSGRDAGFLREIETAMWDDAQAYRFEEAARKRDQLEALRKVLEKNAA 247

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D F+L  ++    +Q  +   G+ RG   +    + +     +++  L Q Y
Sbjct: 248 VLSDDTDADLFALEADELQVSVQVFYVRAGRIRGQRGWVSAREEDLDEPSLMARALEQIY 307

Query: 295 TDKP------------------------------CPENILLSEEAEETSLLEISFFKQYG 324
            +                                 P+ IL+S    +  +L+       G
Sbjct: 308 GEAAADFAHEGGVARPRRVGPSSANDTAHFDTSVIPKEILVSVSPADVGMLQRWLGALRG 367

Query: 325 YKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380
            +V I VP++G KR+ + +  +NA        T++        + L +  +   +     
Sbjct: 368 SQVSIRVPQRGAKREALSRVQLNAVEGLRLYKTRRARDLTQRNLALNELGRLLEIDPPL- 426

Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT-QDDCAMMRMVLERRF 439
           RIE YD SH  G   +G MVV  +    K+ YRKF++   D     DD   M  VL RRF
Sbjct: 427 RIECYDISHTQGTFQMGSMVVFEDGAPRKDAYRKFSIRGEDGTGTPDDTTAMNEVLRRRF 486

Query: 440 SQLIKNEEN-----------------------------------LNFHPKKQEYSFPSWP 464
            +LI+ E                                          +++   F   P
Sbjct: 487 ERLIQEENGQSSAQSEPNATTTARGTDLVETKHPSPQTTPSVALPPLGTEREPRRFSYRP 546

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D+V++DG   Q+ AA+  + ++ V + I +I +AK  +     E + V     ++     
Sbjct: 547 DLVVVDGALPQVHAARAAMDEVGVWD-IPVIGLAKRLE-----EVWRVDDDFPVIFPRTS 600

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             LY +Q LRDE+HRFAI+ HR++R +    S LD   G+GP +++ LL+ FG+VK +  
Sbjct: 601 EALYLLQYLRDESHRFAISAHRQKRARAMTRSILDAAPGVGPAKQKALLRHFGSVKRLRE 660

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +S   +A + G   K A  +    + + + 
Sbjct: 661 ASAAEIAEVPGFGLKSAENLVAFLNNSGNS 690


>gi|94267276|ref|ZP_01290829.1| Excinuclease ABC, C subunit [delta proteobacterium MLMS-1]
 gi|93452068|gb|EAT02756.1| Excinuclease ABC, C subunit [delta proteobacterium MLMS-1]
          Length = 603

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 190/609 (31%), Positives = 292/609 (47%), Gaps = 27/609 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTCTE 66
           + PGVY M D AG VLYVGKA +L+KR+ SY         +   M++++  +   +T TE
Sbjct: 12  DGPGVYLMKDKAGVVLYVGKAVSLRKRLASYTRIDPAARSKTAVMLAKVAAVDTVLTRTE 71

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EAL+LEA +IK+ +PR+N++LRDDK++P I +T + + P L   R  +     YFGP++
Sbjct: 72  KEALILEAGLIKQHRPRYNVILRDDKNYPSIKVTLQEEWPRLLMTRRLTRDGARYFGPYS 131

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  A+ +TI  L   + LR C    FR   R CL +Q+ RC GPC G I  E Y + V  
Sbjct: 132 SPAAMWETIRLLNTLYPLRRCKTKKFRPGQRACLNYQLGRCPGPCIGAIGPEAYRQRVER 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
               L G    L +++ + M  A  +  +E A   RD++ AL                 D
Sbjct: 192 VLAILEGRKRELVKELEQQMAAAAAELRFEEAAALRDQIGALHQTLEKQLVAGQEKGARD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDKPCPE 301
            F L   +            G       FFL       +A++L+  LR++Y     P P 
Sbjct: 252 VFGLVRREGKVAAALLLIREGALADKRQFFLDQPLG-DDAEVLAELLRRYYEPEQHPVPP 310

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILL    E ++ L     ++ G  V++ VP++G+K+ ++  A  NA +   +    E  
Sbjct: 311 RILLPFAPEGSAALAEWLSEKRGGPVQLLVPRRGDKKALVGMAHDNAAQVLAEHGRQEQQ 370

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            + +     +   L   P R+E  D S++ G  AVG ++          +YR+F +   D
Sbjct: 371 WEQLATAIQQAMQLVQPPTRLECLDISNLGGQQAVGSLISFNSGVKEPGRYRRFKIRTRD 430

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD AMMR VL R  S+  + +   +                       GQL  AQ 
Sbjct: 431 TP--DDYAMMREVLWRHLSRGWQQQSLPDLLLLDGGK---------------GQLGVAQA 473

Query: 482 VLKKLNV-ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
           V+ +L +  ++  + +IAK  +   G   F   +   L L    P+L F+ RLRDEAHRF
Sbjct: 474 VVAELGLAADKPALAAIAKERE-GEGERIFLPGRKNPLKLAPNSPVLLFMMRLRDEAHRF 532

Query: 541 AITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
            IT HRK R  +   S LD I G+GP RK  LL++ G+++ +  +S   LA++ GI  ++
Sbjct: 533 GITHHRKLRSQQQLASGLDRIPGVGPARKAALLKTLGSLEAVRGASRAELAAVSGIGPEL 592

Query: 600 ACKIYNHFH 608
           A  I++H  
Sbjct: 593 AAVIHDHLR 601


>gi|225868374|ref|YP_002744322.1| UvrABC system protein C [Streptococcus equi subsp. zooepidemicus]
 gi|259710348|sp|C0MDW7|UVRC_STRS7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|225701650|emb|CAW98952.1| UvrABC system protein C [Streptococcus equi subsp. zooepidemicus]
          Length = 594

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 169/614 (27%), Positives = 284/614 (46%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D AG ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPDSPGCYLHKDKAGTIIYVGKAKNLRNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-EPFPRLLITRQIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + V     + C  + + +C            + 
Sbjct: 126 FGPYPDAYTATEVKKLLDRIFPFKKCKNPV----NKVCFYYHLGQCQAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V + K+FL+G +  + + +   M +A+  +++E A  +RD ++ ++ ++     +   
Sbjct: 182 SLVADVKQFLNGKDDKIIDDLRSKMLEASHNQEFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  + +K   C+Q  F   G+            +E+    +             
Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEEDFLTYVGQFYSDQRHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + E  +ET +  I   +          P++GEK++++  A  NA     +    
Sbjct: 302 IPKEVFIPETIDETLVAAIVPARIVK-------PQRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      ++   +   +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDLRKTSGAIEHLGQLLGIEKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S++                     PD++I+DGG+G
Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVKHEG--------------LQAPDLIIVDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+ AA+ V+ +  +   I +  + K  K     E  F      + L       + + R++
Sbjct: 458 QVKAARDVI-EHQLGLSIPVAGLQKNDKHQT-HELLFGNPLAVVELPRNSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K A+S  LD I G+GP RK+LLL+ F ++  + ++S E +  + 
Sbjct: 516 DEVHRFAITFHRQVRSKNAFSSKLDHIAGLGPKRKQLLLKRFKSMAALEQASLEEIQQL- 574

Query: 594 GISKKIACKIYNHF 607
           GI K +A  + +H 
Sbjct: 575 GIPKTVAEALIDHL 588


>gi|94270409|ref|ZP_01291734.1| Excinuclease ABC, C subunit [delta proteobacterium MLMS-1]
 gi|93450815|gb|EAT01854.1| Excinuclease ABC, C subunit [delta proteobacterium MLMS-1]
          Length = 603

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 190/609 (31%), Positives = 292/609 (47%), Gaps = 27/609 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTCTE 66
           + PGVY M D AG VLYVGKA +L+KR+ SY         +   M++++  +   +T TE
Sbjct: 12  DGPGVYLMKDKAGVVLYVGKAVSLRKRLASYTRIDPAARSKTAVMLAKVAAVDTVLTRTE 71

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EAL+LEA +IK+ +PR+N++LRDDK++P I +T + + P L   R  +     YFGP++
Sbjct: 72  KEALILEAGLIKQHRPRYNVILRDDKNYPSIKVTLQEEWPRLLMTRRLTRDGARYFGPYS 131

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  A+ +TI  L   + LR C    FR   R CL +Q+ RC GPC G I  E Y + V  
Sbjct: 132 SPAAMWETIRLLNTLYPLRRCKTKKFRPGQRACLNYQLGRCPGPCIGAIGPEAYRQRVER 191

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMD 243
               L G    L +++ + M  A  +  +E A   RD++ AL                 D
Sbjct: 192 VLAILEGRKRELVKELEQQMAAAAAELRFEEAAALRDQIGALHQTLEKQLVAGQEKGARD 251

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDKPCPE 301
            F L   +            G       FFL       +A++L+  LR++Y     P P 
Sbjct: 252 VFGLVRREGKVAAALLLIREGALADKRQFFLDQPLG-DDAEVLAELLRRYYEPEQHPVPP 310

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILL    E ++ L     ++ G  V++ VP++G+K+ ++  A  NA +   +    E  
Sbjct: 311 RILLPFAPEGSAALAEWLSEKRGGPVQLLVPRRGDKKALVGMAHDNAAQVLAEHGRQEQQ 370

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
            + +     +   L   P R+E  D S++ G  AVG ++          +YR+F +   D
Sbjct: 371 WEQLATAIQQALQLVQPPTRLECLDISNLGGQQAVGSLISFNSGVKEPGRYRRFKIRTQD 430

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD AMMR VL R  S+  + +   +                       GQL  AQ 
Sbjct: 431 TP--DDYAMMREVLWRHLSRGWQQQSLPDLLLLDGGK---------------GQLGVAQA 473

Query: 482 VLKKLNV-ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
           V+ +L +  ++  + +IAK  +   G   F   +   L L    P+L F+ RLRDEAHRF
Sbjct: 474 VVAELGLAADKPALAAIAKERE-GEGERIFLPGRKNPLKLAPNSPVLLFMMRLRDEAHRF 532

Query: 541 AITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
            IT HRK R  +   S LD I G+GP RK  LL++ G+++ +  +S   LA++ GI  ++
Sbjct: 533 GITHHRKLRSQQQLASGLDRIPGVGPARKAALLKTLGSLEAVRGASRAELAAVSGIGPEL 592

Query: 600 ACKIYNHFH 608
           A  I++H  
Sbjct: 593 AAVIHDHLR 601


>gi|195978295|ref|YP_002123539.1| excinuclease ABC subunit C [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|238689823|sp|B4U3F9|UVRC_STREM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|195975000|gb|ACG62526.1| excinuclease ABC subunit C [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 594

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 171/614 (27%), Positives = 286/614 (46%), Gaps = 41/614 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D AG ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPDSPGCYLHKDKAGTIIYVGKAKNLRNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTGSNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-EPFPRLLITRQIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + V     + C  + + +C            + 
Sbjct: 126 FGPYPDAYTATEVKKLLDRIFPFKKCKNPV----NKVCFYYHLGQCQAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V + K+FL+G +  + + +   M +A+ K+++E A  +RD ++ ++ ++     +   
Sbjct: 182 SLVADVKQFLNGKDDKIIDDLRSKMLEASNKQEFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  + +K   C+Q  F   G+            +E+    +             
Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEEDFLTYVGQFYSDQRHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I + E  +ET +  I   +          P++GEK++++  A  NA     +    
Sbjct: 302 IPKEIFIPETIDETLVAAIVPARIVK-------PQRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      ++   +   +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDLRKTSGAIEHLGQLLGIEKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S++                     PD++I+DGG+G
Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVKHEG--------------LQVPDLIIVDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+ AA+ V+ +  +   I +  + K  K     E  F      + L       + + R++
Sbjct: 458 QVKAARDVI-EHQLGLSIPVAGLQKNDKHQT-HELLFGNPLAVVELPRNSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K A+S  LD I G+GP RK+LLL+ F ++  + ++S E +  + 
Sbjct: 516 DEVHRFAITFHRQVRSKNAFSSKLDHIAGLGPKRKQLLLKRFKSMTALEQASLEEIQQL- 574

Query: 594 GISKKIACKIYNHF 607
           GI K +A  +++H 
Sbjct: 575 GIPKTVAEALFDHL 588


>gi|91215528|ref|ZP_01252499.1| excinuclease ABC, C subunit [Psychroflexus torquis ATCC 700755]
 gi|91186480|gb|EAS72852.1| excinuclease ABC, C subunit [Psychroflexus torquis ATCC 700755]
          Length = 600

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 182/624 (29%), Positives = 306/624 (49%), Gaps = 52/624 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +PE PGVYQ  D   R+LYVGKA NL+KR+ SY +  + +HRI  M+++I +I+ 
Sbjct: 8   IQVKTLPESPGVYQYYDKDDRILYVGKAKNLKKRVSSYFNKQHDSHRIGVMVNKIKDIKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +E++ALLLE  +IK+L+PRFNI+LRDDK++P++ I    + P ++  R        
Sbjct: 68  IVVDSEMDALLLENTLIKKLQPRFNIMLRDDKTYPWLCI-KNERFPRVFLTRQIIKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175
           Y+GP+ S+  V+  +  ++  F LR+C   + +      + + CL + +  C GPC    
Sbjct: 127 YYGPYPSLRTVKTILGLIKGLFQLRTCNYDLSKAKIDNGKYKVCLEYHLGNCKGPCEDLQ 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
              +YM+ +   +  + G   +  +     M        +E A   + +++ L   Q  +
Sbjct: 187 DEGEYMKQIEAIRNIVKGNLKDSLKDFREQMGHLAEDMRFEEAEKVKRKISTLEKYQFKS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  N +D FS+  ++    +       G    + T  +K   + ++A++L   + +
Sbjct: 247 TVVNPKINNVDVFSVVSDEGYGYVNFMQLSHGAVVRSHTIEMKKKLDESDAELLELGITE 306

Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                      I +  E +                V++TVPK G+K+ I+E ++ NA   
Sbjct: 307 IRQRFDSRSPEIYVPFEVKAGE------------YVRVTVPKLGDKKAIVELSIRNAKYF 354

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
             ++         +     ++    +   L   P+ IE +DNS+I G + V   VV    
Sbjct: 355 RMERFKQMKIVDPDRHTNRLMAQMKEDLRLHEEPRHIECFDNSNIQGSNPVAACVVFKNG 414

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YRKFN+    V   DD A M  V+ RR+ +L++ +E L              P 
Sbjct: 415 KPSKKDYRKFNIKT--VVGPDDFASMEEVVYRRYRRLLEEDEPL--------------PQ 458

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           +VI+DGGKGQLS+    L++L +  +I II IAK  +     E F+      L L+ +  
Sbjct: 459 LVIVDGGKGQLSSGVTALERLGLRGKIPIIGIAKRLE-----ELFYPGDQYPLYLDKKTE 513

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LR+EAHRF IT HR +R K+   + L+EI GIG      LLQ+F ++  + ++
Sbjct: 514 TLKIIQQLRNEAHRFGITFHRNKRSKSAIGTELEEITGIGEKTSIELLQNFRSITNVKKA 573

Query: 585 SPETLASIEGISKKIACKIYNHFH 608
           S + L  + G SK  A  I++++H
Sbjct: 574 SLKELKDVIGSSK--ATIIHSYYH 595


>gi|88808548|ref|ZP_01124058.1| excinuclease ABC subunit C [Synechococcus sp. WH 7805]
 gi|88787536|gb|EAR18693.1| excinuclease ABC subunit C [Synechococcus sp. WH 7805]
          Length = 651

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 189/632 (29%), Positives = 302/632 (47%), Gaps = 27/632 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            +++P  PG Y M D   R+LYVGK+ +L+ R++SY  S +  + RI  M+ QI  I F 
Sbjct: 15  LKEIPSEPGCYLMRDGEDRLLYVGKSKSLRSRVRSYFRSRHDLSPRIRLMVRQICEIEFI 74

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT +E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 75  VTDSEAEALALESNLIKNQQPHFNVLLKDDKKYPYLCITWSEPYPRIFITRRRRFRSPLD 134

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R F LR     +   RT  CL + I RC G C  +ISSE 
Sbjct: 135 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHADRT--CLNYSIGRCPGVCQEKISSED 192

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   + +      G +  L+  + + M + + + DYESA   RD+L  L  +        
Sbjct: 193 YHRTLRKVAMVFQGRSDELQMLLHQQMERYSERMDYESAAKIRDQLQGLDQLTADQKMSL 252

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++  +  LA +Q      G+  G   +     ++ +   +       +  
Sbjct: 253 PDASVSRDVIAMAGDDRLAAVQLFQMRAGKLVGRLGYLADASNQPSGLTLQKVIEEHYSQ 312

Query: 296 --DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                 P  +L+  +  +  L+E    +Q   KV+I  PKQ +K  +IE    NA     
Sbjct: 313 VDSVEIPPELLVQHQLPQQPLIEEWLSEQRERKVQIHCPKQRQKADLIELVQRNADYELQ 372

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +    +    +  +D  +   LP  P+RIE YD SHI G  AV   VV  +    +  YR
Sbjct: 373 RAKQGQEQQALATEDLAQLLELPIPPRRIEGYDISHIQGSDAVASQVVFIDGLPARQHYR 432

Query: 414 KFNLHPNDV---KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-------YSFPSW 463
           K+ +  + +    + D  AM  ++  R     +  +E ++    +Q+            W
Sbjct: 433 KYKIRSSSIRAGHSDDFMAMAEIMRRRFRRWALAKKEGVDVGALRQKGGSALQTDGLNDW 492

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PDVV++DGGKGQLSA    L++L++   +TI S+AK  +     E F   + + L  +M 
Sbjct: 493 PDVVMIDGGKGQLSAVMEALRELDLHEDLTICSLAKQRE-----EVFLPGETQPLESDMD 547

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
              +  ++RLRDEAHRFA++ HR++R  +   S L +I G+GP R + LL  F ++  I 
Sbjct: 548 QLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGVGPKRVKDLLAHFHSIDAIQ 607

Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            +S ETL    G+   +A  I   FH      
Sbjct: 608 LASVETLVKAPGVGLALARDIRCFFHPEEDTQ 639


>gi|152966879|ref|YP_001362663.1| excinuclease ABC subunit C [Kineococcus radiotolerans SRS30216]
 gi|151361396|gb|ABS04399.1| excinuclease ABC, C subunit [Kineococcus radiotolerans SRS30216]
          Length = 704

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 184/658 (27%), Positives = 302/658 (45%), Gaps = 54/658 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  GRV+YVGKA +L+ R+ +Y    +    R   M++   ++ +TV 
Sbjct: 39  EIPVEPGVYRFRDPHGRVIYVGKAKSLRARLSNYFQDLSALHPRTMAMVTTAASVEWTVV 98

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   ++P +   R +      YFG
Sbjct: 99  ATEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTMGEEVPRVQVMRGAKRKGTRYFG 158

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T++ L R F +R+C+  V++      RPCLL  I +CS PC G+I +E++
Sbjct: 159 PYTHAWAIRETVDLLLRVFPVRTCSTGVYKRAGQVGRPCLLGYIDKCSAPCVGKIDAEEH 218

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F++G       +  R M  A  + DYE A   RD L AL+     +  +  
Sbjct: 219 RALAQDFCDFMAGNTQKFVRRTEREMKAAAAEMDYERAARLRDDLGALTKALEKSAVVLP 278

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F++  ++  A +Q      G+ RG   +  +   +    Q++   L Q Y  +
Sbjct: 279 DATDADVFAIADDELEAAVQVFHVRGGRVRGQRGWVSEKVEDVDTPQLVEQLLLQVYGGE 338

Query: 298 P---CPENILLSEEAEETSLL-EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                P  +L+ E         E    +  G +V + VP++G+KR ++E    NA ++  
Sbjct: 339 TGEGVPREVLVPELPATVEADVEDWLSELRGSRVDLRVPQRGDKRALMETVQRNATQALA 398

Query: 354 QKLSTE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
              +       +    L++  +   L   P RIE YD SH    + V  MVV  +    K
Sbjct: 399 LHKTRRGGDLTTRSQALQELQEALGLDEAPLRIECYDVSHTQETNVVASMVVFEDGLPKK 458

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLE-----------------RRFSQLIKNEENLN-- 450
             YR+F +   +    D  AM  ++L                   R  ++ + E+     
Sbjct: 459 ADYRRFAVRGEEGGVDDTRAMREVLLRRFRRVRADDARDQPPGATRDERITEGEDGTEVE 518

Query: 451 -------------FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI 497
                             +   F   P +V++DGG+ Q+ AA   L    V + + +  +
Sbjct: 519 TSGAVGGEVLAGIDPDTGRPRRFAYTPQLVVVDGGQPQVEAAARALADAGVVD-VALCGL 577

Query: 498 AKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSP 556
           AK  +     E +   +   +VL    P L+ +QR+RDEAHRFAIT HR +R K    S 
Sbjct: 578 AKRLE-----EVWLPGEAHPVVLPRTSPGLFLLQRVRDEAHRFAITYHRSKRSKAMTTSA 632

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           LD + G+G  RK  LL+ FG+VK +  ++ E +A++ G+  + A  +          +
Sbjct: 633 LDGVPGLGQARKTALLRHFGSVKKLRAATAEEVAAVPGMGPRTARAVVEALAGGAPES 690


>gi|320334469|ref|YP_004171180.1| UvrABC system protein C [Deinococcus maricopensis DSM 21211]
 gi|319755758|gb|ADV67515.1| UvrABC system protein C [Deinococcus maricopensis DSM 21211]
          Length = 633

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 184/632 (29%), Positives = 301/632 (47%), Gaps = 47/632 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P   GVY    ++G  +Y+GKA NL+ R+  +  +   + + T    +  ++ F     
Sbjct: 26  LPTQSGVYIFRSVSGTPIYIGKAKNLRARVTQHFKAGGKSGKFTR---EAASLEFITARN 82

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEAL+LEAN+IK+ +P +N+LL+DDK +P++ +T   + P L   R      GSY+GP+
Sbjct: 83  EVEALVLEANLIKQHRPHYNVLLKDDKHYPFLKLT-SEEFPMLIVTRRVLKDGGSYYGPY 141

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               AV +  N +   F LR  +    + + RPCL F + RC GPC       +Y   V 
Sbjct: 142 PDASAVRRVKNLVDTMFPLRKNSGIPLQKKPRPCLNFHMGRCLGPCVDAADRAEYARAVD 201

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHNDSIYNR 241
           + K  L G   ++   +   M  A LK+D+E A   RDR+ A+       Q+   S    
Sbjct: 202 DVKALLEGRAGSVVTGLKERMRDAALKQDFELAARLRDRVQAVEKLFGTEQHAFVSDETD 261

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300
           +D   L      A +Q      G+  G    FL    +S   ++L  F++ +YT     P
Sbjct: 262 LDFLGLAVAGEYAMVQLFRMRGGRVVGRDKRFLTNAGDSERGEVLGAFVQDYYTQATHVP 321

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR--SHTQKLST 358
             +L+ EE E+ +L      ++ G KV++  P +G+K  +IE A  NA         L  
Sbjct: 322 PLVLIPEEFEDAALWSEFLSQKAGRKVELRTPHRGDKVDLIEMAQRNAQNGLESEMLLLE 381

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L+   +  ALP  P RIE YDNS++ G + V  MVV       K ++R+F + 
Sbjct: 382 KRGDHPGLEALKEVLALPERPWRIEGYDNSNLFGTNIVSGMVVFEGGRARKGEHRRFKVR 441

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   DD A MR  + RRFS  + ++                 PD++++DGG+GQ++A
Sbjct: 442 G--LDHPDDYAAMRQTVHRRFSGSLSDK--------------LPLPDLILIDGGRGQVNA 485

Query: 479 AQGVLKKLNVENRITIISIAKGPKR-------------SAGMEKFFVKKGEALVLNMRDP 525
           A   L++LN+   I ++ +AK  +R               G E     +   L+L    P
Sbjct: 486 ALDALRELNLH--IPLVGLAKREERIVLPSIYGAQWWLDTGTEV---GRNRELLLPETHP 540

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  +  +RDE H +AIT HRK R +    S  D++ GIG  R+  LL+ F +++ ++ +
Sbjct: 541 ALRTLIGVRDEVHHYAITYHRKLRGEGMLRSVFDDLPGIGQKRQDALLEHFSSLEDLASA 600

Query: 585 SPETLASIEGISKKIACKIYNHFH-KNTSHTP 615
           S E +A + G++ + A  +      +  +  P
Sbjct: 601 SVEDIARVPGMNARAAQAVKAFLQAREQNSAP 632


>gi|77412862|ref|ZP_00789067.1| excinuclease ABC, C subunit [Streptococcus agalactiae 515]
 gi|77161158|gb|EAO72264.1| excinuclease ABC, C subunit [Streptococcus agalactiae 515]
          Length = 583

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 171/611 (27%), Positives = 293/611 (47%), Gaps = 41/611 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y   D  G ++YVGKA NL+ R+KSY H +++T +   ++S+I +  + VT +
Sbjct: 2   LPDSPGCYLHKDKNGTIIYVGKAKNLKNRVKSYFHGSHNT-KTELLVSEIEDFEYIVTTS 60

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EALLLE N+I+   P++NI L+DDKS+PYI IT+  + P L   R      G+YFGP+
Sbjct: 61  NTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTYFGPY 119

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A  +    L R F  + C +       + C  + + +C+     + +   +     
Sbjct: 120 PDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWDSLRE 175

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           + K+FL+G ++ +   +   M  A +  ++E A  +RD + A+S ++     I+  M   
Sbjct: 176 DVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQDMKDR 235

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  + +K   C+Q  F   G+            +E     +         T    P+ 
Sbjct: 236 DVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHFLPKE 295

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           + + ++ +  S+  I          KI  P++GEK++++  A+ NA     +        
Sbjct: 296 VFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKD 348

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  +++      +P    RIE +DNS+I G S V  MVV       K  YRKF + 
Sbjct: 349 IRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRKFKIK 407

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD A MR V+ RR+S+++K+                + PD++++DGG+GQ++ 
Sbjct: 408 T--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQGQVNI 451

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ V+ +  +   I I  + K  K     E  F    E + L       + + R++DE H
Sbjct: 452 ARDVI-ENQLGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQDEVH 509

Query: 539 RFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  E +    GI +
Sbjct: 510 RFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKAEIEDIIM-CGIPR 568

Query: 598 KIACKIYNHFH 608
            +A  + +  +
Sbjct: 569 TVAESLRDSLN 579


>gi|153005348|ref|YP_001379673.1| excinuclease ABC subunit C [Anaeromyxobacter sp. Fw109-5]
 gi|189038018|sp|A7HD93|UVRC_ANADF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|152028921|gb|ABS26689.1| excinuclease ABC, C subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 716

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/671 (29%), Positives = 314/671 (46%), Gaps = 82/671 (12%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIRF 60
            +++P  PG Y M D  G V+YVGKA +L+ R++SY  ++    R  +  +   + ++  
Sbjct: 9   LDELPAEPGCYLMKDRRGAVVYVGKASSLRSRVRSYFDASRGDDRAFVALLDELLGDVEV 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK--HRDSSTIQ 118
            VT +E EA+LLE  +IKR +PRFNI LRDDK F  + + ++H  P L     R+     
Sbjct: 69  IVTRSEKEAVLLENELIKRHRPRFNIRLRDDKDFIVLRLDERHAFPRLEVRRAREPRRAG 128

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             YFGP++S  ++ +T+  + R F LR+C D VF HR RPC+L+QIKRC  PC  ++   
Sbjct: 129 ARYFGPYSSASSIRETLRVVNRHFQLRTCTDHVFEHRKRPCILYQIKRCPAPCVYDVPEA 188

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + V +A +FL G    L E++   M++A     +E A   RD+L A+         +
Sbjct: 189 EYRQSVEDAIEFLEGRETELVERLHGRMDEAADALRFEDAARLRDQLQAVERSLEKQRVL 248

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D   LY       +Q      G+ + + ++    + E  + + LS FL  +Y 
Sbjct: 249 MADRADRDVVGLYREGPDLVVQVLAMRAGKLQDSRSY-PFHEQEFPDEETLSSFLSLYYE 307

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               PE IL+  E  E   L     ++ G +V++  P++G K  ++E A  NA +     
Sbjct: 308 QNAAPEEILVPVEPAEVDALADVLSERRGRRVRLLTPQRGAKADLLEVAARNAEQGFRSW 367

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
              +   +  L   T+   L   P+ +E YD S   G  AVG  V   +    K  YR++
Sbjct: 368 HEKDERREQALAALTRALHLARPPRWMECYDISTFQGALAVGSGVSFRDGEPDKACYRRY 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    V  QDD AM+  V+ RR  + +                  ++PD++++DGGKGQ
Sbjct: 428 KVKG--VAGQDDFAMLYEVVSRRLRRALGE---------------GAFPDLLVIDGGKGQ 470

Query: 476 LSAAQGVLKKLNVENR----------ITIISIAK---------GPKR------------- 503
           L+AA    K L V  +          + ++ +AK         G  R             
Sbjct: 471 LNAALAAAKDLGVPTKPSPGNEGAPFVELVGLAKSRLVDAPALGTTRVIGRRGRGGGASR 530

Query: 504 ------------------------SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
                                    +    F   + + +VL      L+ + RLRDEAHR
Sbjct: 531 AASGAAALADAAEAQEHGFVSELARSPERVFLPGRKDPVVLRQNSAELFLLARLRDEAHR 590

Query: 540 FAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAIT HRK RR++   S L+EI+GIG  RKR LL+ FG ++ +  ++ + ++ ++G   K
Sbjct: 591 FAITFHRKLRRERNFQSVLEEISGIGEGRKRALLRHFGALRRVKEATLDEISQVDGFGPK 650

Query: 599 IACKIYNHFHK 609
            A  ++  FH 
Sbjct: 651 QARAVFEFFHP 661


>gi|146298489|ref|YP_001193080.1| excinuclease ABC, C subunit [Flavobacterium johnsoniae UW101]
 gi|189038052|sp|A5FM03|UVRC_FLAJO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|146152907|gb|ABQ03761.1| excinuclease ABC, C subunit [Flavobacterium johnsoniae UW101]
          Length = 597

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 181/626 (28%), Positives = 307/626 (49%), Gaps = 52/626 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +P+ PGVYQ  D  G++LYVGKA NL+KR+ SY +  + T +   ++ +I  I+ 
Sbjct: 8   LQILTLPDNPGVYQYYDKDGKILYVGKAKNLKKRVSSYFNKIHDTAKTNVLVKKIVTIKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK L+PR+N+LLRDDKS+P+I I  K     ++  R        
Sbjct: 68  IVVPTETDALLLENNLIKTLQPRYNVLLRDDKSYPWICI-KKEPFSRIFLTRRMVKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ +   V   ++ ++  + LR+C       ++   + + CL + I  C GPC G  
Sbjct: 127 YFGPYTNFKMVYTILDLIKELYPLRTCNYDLSQSNIDSGKFKVCLEYHIGNCKGPCEGLE 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
             E+Y   V+  ++ L G      +   + MN       +E A   ++++  L + Q+ +
Sbjct: 187 PLEEYQRQVNAIREILKGNFKESLKDFKKLMNNYAQNLQFEEAQKIKEKIEVLENYQSRS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                    +D FS+  +++ A +       G    + T  +K   + ++ ++L   + +
Sbjct: 247 TIVNPKITNIDVFSIISDESAAYVNFLQISHGSIIRSHTLEMKKKLDESDEELLELAIIE 306

Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                    + I++  E +                +K TVP+ G+K++I++ ++ NA   
Sbjct: 307 LRERFQLMSKEIIVPFEIDLGE------------NIKTTVPQLGDKKQILDLSIRNAKFY 354

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
             ++L        +     I+    K   LP  P+ IE +DNS+I G + V   VV  + 
Sbjct: 355 RIEQLKQLQIVDPDRHVNRIMAQMQKDLRLPVEPRHIECFDNSNIQGTNPVAACVVFKDG 414

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YR FN+    V+  DD A M  ++ RR+ +L+   + L              P 
Sbjct: 415 KPSKKDYRHFNVKT--VEGPDDFASMTEIVYRRYKRLLDENQPL--------------PQ 458

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQLS+A   + +L +  ++ II IAK  +     E F+      L L+ +  
Sbjct: 459 LIIIDGGKGQLSSALKSIDELGLRGKVAIIGIAKRLE-----ELFYPGDSIPLYLDKKSE 513

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LR+EAHRF IT HR +R K A  S ++ I GIG      L+Q F +VK +  +
Sbjct: 514 TLKVIQQLRNEAHRFGITFHRDKRSKAALNSSVESIPGIGEKTMLTLIQHFKSVKRLKLA 573

Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610
           + + ++++ G+SK  A KI + +  N
Sbjct: 574 TEKEISAVVGVSK--AKKIVDFYKTN 597


>gi|25011343|ref|NP_735738.1| excinuclease ABC subunit C [Streptococcus agalactiae NEM316]
 gi|81446312|sp|Q8CX26|UVRC_STRA3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|24412881|emb|CAD46953.1| excinuclease ABC (subunit C) [Streptococcus agalactiae NEM316]
          Length = 593

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 172/615 (27%), Positives = 294/615 (47%), Gaps = 41/615 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R+KSY H +++T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVKSYFHGSHNT-KTELLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+PYI IT+  + P L   R      G+Y
Sbjct: 67  VTTSNTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C+     + +   + 
Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
               + K+FL+G ++ +   +   M  A +  ++E A  +RD + A+S ++     I+  
Sbjct: 182 SLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQD 241

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  + +K   C+Q  F   G+            +E     +         T   
Sbjct: 242 MKDRDVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + ++ +  S+  I          KI  P++GEK++++  A+ NA     +    
Sbjct: 302 LPKEVFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++      +P    RIE +DNS+I G S V  MVV       K  YRK
Sbjct: 355 LEKDIRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K+                + PD++++DGG+G
Sbjct: 414 FKIKT--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 458 QVNIARDVI-ENQLGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  E +    
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKAEIEDIIM-C 574

Query: 594 GISKKIACKIYNHFH 608
           GI + +A  + +  +
Sbjct: 575 GIPRTVAESLRDSLN 589


>gi|319442103|ref|ZP_07991259.1| excinuclease ABC subunit C [Corynebacterium variabile DSM 44702]
          Length = 677

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 188/659 (28%), Positives = 304/659 (46%), Gaps = 71/659 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
            +P  PGVY   D   RVLYVGKA NL+ R+ +Y     H   RI  M+   +++++TV 
Sbjct: 13  TIPTSPGVYTFRDTDDRVLYVGKAKNLRSRLSNYFQDPAHLNPRIRTMVHSADHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EAL LE   IK+  PR+N++ RDDK++P + ++ K + P  + +R        YFG
Sbjct: 73  SSELEALNLEYTWIKKFAPRYNVMYRDDKTYPMLAVSVKEQYPRAFLYRGPRKKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T+ SL R F +R+C   V+R      RPCLL  I RCS PC G +S  ++
Sbjct: 133 PYPKAWAIRETLESLTRVFPVRTCTAGVYRRHEQLGRPCLLGYIDRCSAPCVGRVSPSQH 192

Query: 181 MEFVHEAKKFLSG-GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           ME V     FL+G     +   +   M  A    D+E A   RD+L A+         ++
Sbjct: 193 MELVDGFCSFLAGGNTERVMRDVRHEMEGAAENLDFERAASLRDQLGAMDSAMEKQSVVF 252

Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN-------AQILSYF 289
           +     D  +   +     +Q      G+ RG   + ++  +  ++         +L+ F
Sbjct: 253 SDNTDADVIATAGDDLETAVQIFHVRGGRIRGQRGWVVENATGDSDVTGEAGTPALLADF 312

Query: 290 LRQFYTD--------------------------KPCPENILLSEEAEETSLL---EISFF 320
           L QFY                            +P P  IL+  + +E   +        
Sbjct: 313 LTQFYGQSAELSDATESAVGGNSRAAASREVTLEPVPREILVPVDPDEIDDIDGLSAWLT 372

Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----STEISHQMILKDFTKKFALP 376
              G +V +  P++G+K+ +++ A  NA ++  Q          +    L++  +   + 
Sbjct: 373 DLRGARVTVRFPQRGDKKALMDTARENAAQALRQHKLARVGDITARSSALEELREALWMD 432

Query: 377 HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVL 435
             P RIE  D SHI G   V  +VV  +    K+ YR++ +         DD A +  V+
Sbjct: 433 EPPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYRIREAAGDGHSDDVASIAEVV 492

Query: 436 ERRFSQLIK---------------NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            RRF +  +                 E      +K    F   P + I+DGG+ Q+ AAQ
Sbjct: 493 RRRFQRYQQDKTAVPAGDDAGDRLEGEVSAAEAEKGAKRFAYPPQLFIVDGGRPQVEAAQ 552

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            VL +L V + +T++ IAK  +     E +       +++    P LY +Q++RDEAHRF
Sbjct: 553 QVLDELGVTD-VTLVGIAKRLE-----ELWVPGDEYPVIVARNSPALYLVQQIRDEAHRF 606

Query: 541 AITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           AIT HR  R K+   S LDE+ G+GP R+  L+ +FG+V  +  +  E +A++ G   K
Sbjct: 607 AITFHRASRGKRMTRSVLDEVPGLGPKRRSQLVTAFGSVAKVREAGEEAVAALPGFGPK 665


>gi|189460229|ref|ZP_03009014.1| hypothetical protein BACCOP_00866 [Bacteroides coprocola DSM 17136]
 gi|189433090|gb|EDV02075.1| hypothetical protein BACCOP_00866 [Bacteroides coprocola DSM 17136]
          Length = 618

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 172/618 (27%), Positives = 312/618 (50%), Gaps = 46/618 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PG+YQ L+  G ++YVGKA NL++R+ SY    + + +   ++S+I +IR+ V  
Sbjct: 32  NLPSTPGIYQYLNKEGVIIYVGKAKNLKRRVYSYFSKEHQSAKTRILVSKIADIRYIVVN 91

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDKS+P I +++    P ++K R       +Y+GP
Sbjct: 92  TEEDALLLENNLIKKYKPRYNVLLKDDKSYPSICVSN-EYFPRVFKTRQIIRNGSTYYGP 150

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + +++  ++ +++ + LR+C      +++ + +   CL + IK C GPC G  S ++
Sbjct: 151 YSHIPSMQAVLDLIKKLYPLRTCHLALTPENIRQGKFNVCLEYHIKNCKGPCIGMQSHDE 210

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           YM+ + + K+ L G    + + + + M     +  +E A   +++   +   +  ++   
Sbjct: 211 YMDNIAQVKEILKGNTQAISDALMKEMMSLAEEMKFEEAQKVKEKYELIESYRAKSEVVS 270

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            I + +D FS+  ++N A I       G      TF  K     T  ++L   + +    
Sbjct: 271 SILHNIDVFSIEMDENSAYINYLHITNGCINQAFTFEYKKRLNETKEELLQLGIIEMRER 330

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
                  ++     +  L            V  T+P++G+K+ ++E +L+N  +    +L
Sbjct: 331 YKSCSREIIVPFELDMELN----------NVTFTIPQRGDKKHLLELSLLNVKQYKVDRL 380

Query: 357 ST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                   E     +LK+  ++  +  +P  IE +DNS+I G  AV   VV  +    K 
Sbjct: 381 KQAEKLNPEQRSVRLLKEIQEQLQMDKMPMHIECFDNSNIQGSDAVAACVVFKKARPSKK 440

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRK+N+    V   DD A M+ V+ RR+S++++ +  L              PD+++ D
Sbjct: 441 DYRKYNIKT--VVGPDDYASMQEVVRRRYSRILEEQGEL--------------PDLILTD 484

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ+   + V++   ++ +I I  +AK  K     E  F      + +    P+ + +
Sbjct: 485 GGKGQMEVVRQVIED-ELKLQIPIAGLAKNNKHRTS-EVLFGFPPMTIGIKQGTPLFHLL 542

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           + ++DE HRFAIT HR +R K+   S LD I GIG  RK  LL+ F +V  I +++ E L
Sbjct: 543 ENIQDEVHRFAITFHRDKRSKSQIASALDGIKGIGEKRKTALLKEFKSVARIKQATVEEL 602

Query: 590 ASIEGISKKIACKIYNHF 607
           A++  I +  A  +    
Sbjct: 603 AAV--IGEAAAKSVKEAL 618


>gi|300775241|ref|ZP_07085103.1| excision endonuclease subunit UvrC [Chryseobacterium gleum ATCC
           35910]
 gi|300505981|gb|EFK37117.1| excision endonuclease subunit UvrC [Chryseobacterium gleum ATCC
           35910]
          Length = 597

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 192/625 (30%), Positives = 302/625 (48%), Gaps = 49/625 (7%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVY+  D   ++LYVGKA NL+KR+ SY + N   +RI  M+S+I  +  
Sbjct: 7   LQLKTLPSEPGVYRYYDKNEQLLYVGKAKNLKKRVLSYFNKNLSGYRIKIMVSKIQRLET 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+  +E +ALLLE N+IK  +P +N++L+DDK++P+I I      P ++  R+       
Sbjct: 67  TIVNSEYDALLLENNLIKEHQPFYNVMLKDDKTYPWICI-KNEDFPRIFLTRNVIKDGSE 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEI 175
           Y+GP+A V   +  +++++  + LR+C  +     +   + + CL + IK C GPC    
Sbjct: 126 YYGPYAKVRPAKILLDTIKHIYKLRTCNLNLSPAKIAEGKYKVCLEYHIKNCEGPCEDVE 185

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y E +   +  + G     KE +   M +      +E A I ++RL  L   Q  N
Sbjct: 186 SKEDYDEKIDAIRGIIKGDFRKAKEYLVNQMMKLASNLKFEEAQIIKERLDILEDYQAKN 245

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D F +  ++  A +       G    + T  +K   E T+  I+   L +
Sbjct: 246 TVVNPNIDDVDVFGMTSDETAAYVNFFKIRNGNIIQSFTTEIKKILEETDEDIMEEALIE 305

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                            +   +L           VK+ VPK G+K++I+E +  NA    
Sbjct: 306 IRQKFSS----------DSKEVLLPFHLSVEIPNVKLIVPKVGDKKRIVELSEKNAKEYR 355

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            +KL        E     I+ +  K   +P  P+ IE +DNS+I G + V   VV  +  
Sbjct: 356 LEKLKQVQIVDPERHTNRIMAEMQKLLRMPVEPRHIEGFDNSNIQGTNPVSACVVFKDGR 415

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR F  HP  V+  +D A M  V+ RR+ +++   ENL              P +
Sbjct: 416 PSKADYRIF--HPKTVEGPNDFATMEEVIYRRYKRMLDEGENL--------------PQL 459

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGGKGQLS+A   L+ L +  +ITI+ IAK  +     E FF +    L L+ +   
Sbjct: 460 ILIDGGKGQLSSAVKSLRLLGLYGKITIVGIAKRLE-----EIFFPEDPIPLYLDKKSET 514

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  +QR+RDEAHRF +  HR RRK +   S L+EI G+G     LLL    +VK I  ++
Sbjct: 515 LKILQRVRDEAHRFGVKHHRTRRKNSTIKSELEEIPGVGEKTIELLLSKLKSVKRIKEAN 574

Query: 586 PETLASIEGISKKIACKIYNHFHKN 610
            ETL  I G  K  A  I+  F+ N
Sbjct: 575 LETLEEILG--KSKAKVIWEFFNAN 597


>gi|284038101|ref|YP_003388031.1| excinuclease ABC, C subunit [Spirosoma linguale DSM 74]
 gi|283817394|gb|ADB39232.1| excinuclease ABC, C subunit [Spirosoma linguale DSM 74]
          Length = 602

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 181/621 (29%), Positives = 304/621 (48%), Gaps = 53/621 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  G V+YVGKA +L+ R+ SY   S  H  +   ++SQI  I FT+ 
Sbjct: 12  KVPHEPGVYRYFDATGEVIYVGKAKDLKNRVSSYFTNSKGHDRKTLRLVSQIRKIEFTIV 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE +ALLLE  +IKR +P+FNILLRDDK++P++ +T++H  P +   R      G+++G
Sbjct: 72  NTEFDALLLENQLIKRYQPKFNILLRDDKTYPFVCVTNEH-FPRVVTTRRIDRKLGTFYG 130

Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           PFA++  +   ++   + F +R+C      +++   + + CL + I  C GPC G+ + E
Sbjct: 131 PFANLKPMYTVLDMFSQLFTIRTCNYNLAPENIEAGKYKVCLEYHIGNCKGPCEGKQAEE 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            Y   + +    L G     +E     M +A     +E A  ++D++  L   Q+ +   
Sbjct: 191 DYNSDIEQVHHILKGNLKPAQEYFKNQMVEAANDLAFEQAQKYKDKMEVLQRFQSKSTVV 250

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D FS+  ++  A I       G    T T  +K   + T+  +++  + +F  
Sbjct: 251 NPKIADADVFSIASDEVSAYINFMKVVNGTIVQTHTVEIKKKLDETDQDLMAMMIIEFRD 310

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------- 348
                   ++S    +  L              +TVP+ G+K+K+++ +L N        
Sbjct: 311 QYGSQAKEIISNIPLDVDLKAE-----------VTVPQIGDKKKLLDMSLKNVLYFRRER 359

Query: 349 -HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
             R+  +  +       +L    +   L  +P RIE +DNS+I G + V  MV       
Sbjct: 360 QERAAAEATANASKKDRVLIRLKQDLQLKTLPNRIECFDNSNIQGTNPVSAMVCFIGGKP 419

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
              +YR F++    V   +D A M  V+ RR+++++  +  L              PD++
Sbjct: 420 ANKEYRHFSIKT--VIGPNDFASMYEVVTRRYTRVLTEDTGL--------------PDLI 463

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           ++DGGKGQLSAA   LK L++  ++ II IAK  +     E +F +    L ++ +   L
Sbjct: 464 VIDGGKGQLSAACDALKDLDLYGKVPIIGIAKRLE-----EIYFPEDNLPLYIDKKSESL 518

Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             IQR+RDEAHRFAIT HR +R + +  S L+ + G+G      LL+ F  V  I  +S 
Sbjct: 519 KLIQRIRDEAHRFAITYHRDKRSRNSLISELENVEGVGKKTAAKLLKHFKGVTKIREASF 578

Query: 587 ETLASIEGISKKIACKIYNHF 607
           + +A + G  K  A K+  +F
Sbjct: 579 DEVAEVVG--KDRAVKLKQYF 597


>gi|308234590|ref|ZP_07665327.1| excinuclease ABC, C subunit [Atopobium vaginae DSM 15829]
 gi|328944355|ref|ZP_08241819.1| UvrABC system protein C [Atopobium vaginae DSM 15829]
 gi|327491274|gb|EGF23049.1| UvrABC system protein C [Atopobium vaginae DSM 15829]
          Length = 666

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 178/635 (28%), Positives = 296/635 (46%), Gaps = 49/635 (7%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           EQ+P  PG Y   + +  V+YVGKA NL+ R+  Y+  ++   +I  M+ ++ +  + V 
Sbjct: 48  EQVPMLPGCYLWKNASDIVIYVGKAKNLRARMLQYVTLSDDRLKIPRMMLEVASFDYVVV 107

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EAL+LE N+I++ KP +N+  +DDKS+PYI +T     PA+   R+       YFG
Sbjct: 108 SSEHEALVLERNLIEQYKPYYNVDFKDDKSYPYIALTKNSLFPAIKYTREHHKRGTKYFG 167

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---------------------RTRPCLLF 162
           P+  V A  +TI  L++   L S + + ++                      R + C  +
Sbjct: 168 PYTDVYAARETIEILRKAVPLCSASCTEWKRLERYFKKHADEKELAPFSLAQRGKACFDY 227

Query: 163 QIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHR 222
            +++  G C G I  ++Y + V   + FLSG   ++ + +   M  A    ++E A   +
Sbjct: 228 HMQKAPGACIGRIGVDEYRQNVALIEDFLSGKRKHILDVLQERMRAAAQDLEFEKAGRIK 287

Query: 223 DRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE 279
            RL  L  + +    +++    MDC   Y  + ++         G+   T  F L    +
Sbjct: 288 HRLQVLQALNDKQKVVFSSRLSMDCIGFYREETISAACVFIVREGRVIRTNEFILNKGLD 347

Query: 280 STNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKR 338
            +  ++   F++++Y      P  I L E   +   L     ++ G  V   VP++GEKR
Sbjct: 348 VSKNELQESFIKRYYHQTADIPAEINLDEMVFDVDALSNWLSEKRGSHVTFRVPQRGEKR 407

Query: 339 KIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394
            ++   + NA     R   +   +E    + L       AL   P RIE +D S + G  
Sbjct: 408 DLLAMVIQNASCALKRYSVRTGYSEDRTNLALTQLESALALDRAPLRIECFDISTLHGYF 467

Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK 454
            V  M+V       K+QYR+F +     +  D  +M  ++  R   + + N+        
Sbjct: 468 TVASMIVFTNGRADKSQYRRFIIKTPLDEANDFVSMQEVLSRRYSKKTMSNK-------- 519

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
                F   PD+++LDGGK QLSAA   L  L+++  I +  +AK  +     E F    
Sbjct: 520 ----RFGKKPDLLVLDGGKPQLSAALSQLHALDLD--IPVCGLAKSDE-----EVFVPWD 568

Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573
              +VL      LY I+++RDE+HRFAIT HR+ R K    S LD I G+GP RK  LL 
Sbjct: 569 TTPIVLPSGSASLYLIKQVRDESHRFAITFHRELRDKAMTKSILDSIEGVGPKRKHALLT 628

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            FG++K +  +S   +A + GIS ++A  ++    
Sbjct: 629 HFGSMKRLRAASVRDIAQVSGISAQVAQNVWEVLQ 663


>gi|251782607|ref|YP_002996910.1| excinuclease ABC subunit C [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391237|dbj|BAH81696.1| uvrABC system protein C [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 594

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 175/613 (28%), Positives = 285/613 (46%), Gaps = 39/613 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-ETFPRLLITRQIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + V     + C  + + +C            + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPV----NKVCFYYHLGQCCAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V + K FL+G +  + + +   M  A+ +  +E A  +RD ++ ++ ++     +   
Sbjct: 182 GLVEDVKHFLNGKDDKIIDGLRAKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  + +K   C+Q  F   G+            +E+    +             
Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNEAEEDFLTYMGQFYQDKQHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH---RSHTQK 355
            P+ + + E  +E  +  I   K          P++GEK++++  A  NA    +     
Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PQRGEKKQLVALATKNARVSLQQKFDL 354

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  +I       D          P RIE +DNS+I G S V  MVV  +    K  YRKF
Sbjct: 355 LEKDIKKTSGAIDNLGYLLGIDKPVRIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRKF 414

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    V   DD A MR V+ RR+S++                     PD++I+DGG GQ
Sbjct: 415 KIKT--VVGPDDYASMREVIFRRYSRVKHEG--------------LVAPDLIIIDGGLGQ 458

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++AA+ V++   +   I I  + K  K     E  F K  E + L       + + R++D
Sbjct: 459 VNAAREVIED-RLGLTIPIAGLQKNDKHQT-HELLFGKPLEVVPLPRNSEEFFLLHRIQD 516

Query: 536 EAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HRFAIT HR+ R K ++S  LD+I G+GP RK++LL+ F T+  I+ +SP+ + S+ G
Sbjct: 517 EVHRFAITFHRQVRSKNSFSSKLDKIPGLGPKRKQILLKHFKTMTAIAAASPDEIHSL-G 575

Query: 595 ISKKIACKIYNHF 607
           I + +A  ++ H 
Sbjct: 576 IPRAVASAVHQHL 588


>gi|319745202|gb|EFV97521.1| excinuclease ABC subunit C [Streptococcus agalactiae ATCC 13813]
          Length = 593

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 172/615 (27%), Positives = 293/615 (47%), Gaps = 41/615 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY H +++T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+PYI IT+  + P L   R      G+Y
Sbjct: 67  VTTSNTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C+     + +   + 
Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
               + K+FL+G ++ +   +   M  A +  ++E A  +RD + A+S ++     I+  
Sbjct: 182 SLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQD 241

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  + +K   CIQ  F   G+            +E     +         T   
Sbjct: 242 MKDRDVFGYFVDKGWMCIQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + ++ +  S+  I          KI  P++GEK++++  A+ NA     +    
Sbjct: 302 LPKEVFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++      +P    RIE +DNS+I G S V  MVV       K  YRK
Sbjct: 355 LEKDIRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K+                + PD++++DGG+G
Sbjct: 414 FKIKT--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +      I I  + K  K     E  F    E + L       + + R++
Sbjct: 458 QVNIARDVI-ENKFGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  E +    
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKAEIEDIIM-C 574

Query: 594 GISKKIACKIYNHFH 608
           GI + +A  + +  +
Sbjct: 575 GIPRTVAESLRDSLN 589


>gi|55823221|ref|YP_141662.1| excinuclease ABC subunit C [Streptococcus thermophilus CNRZ1066]
 gi|81559227|sp|Q5LZ62|UVRC_STRT1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|55739206|gb|AAV62847.1| excinuclease ABC subunit C [Streptococcus thermophilus CNRZ1066]
          Length = 595

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 171/618 (27%), Positives = 296/618 (47%), Gaps = 39/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPSNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+   P+FNI L+D KS+P+I IT K   P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIQENMPKFNIRLKDGKSYPFIKIT-KELYPRLLITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + I +C        +   + 
Sbjct: 126 FGPYPDAGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCKAHTICHTTEAYWQ 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238
             V + K FL+G +  +  ++   M   + + ++E A  +RD + A+S ++         
Sbjct: 182 GLVEDVKNFLNGHDDKIVNQLKAKMKDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +         +   
Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYMGQFYLDSRHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I +  + ++ S+  +   +     VK+  P++GEK++++  A  NA     +    
Sbjct: 302 KPKEIFIPGDIDQESVEALVGDE-----VKVFKPQRGEKKQLVNLATKNARVSLTQKFDL 356

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   Q  +++  K   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 357 LEKDIAKTQGAIENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V+  DD A MR V+ RR+S++ ++                + PD++I+DGG+G
Sbjct: 416 YKIKT--VEGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIIDGGQG 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ VL+   +   I +  + K  K     E  F      + L  +    + + R++
Sbjct: 460 QVNVAKDVLRN-ELNLSIPVAGLQKNDKHQT-NELLFGDPLRVIDLPRQSEEFFLLHRIQ 517

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD + G+GP RK+ LL++F ++  I ++S E + ++ 
Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKNFKSMTAIQQASVEDIQAL- 576

Query: 594 GISKKIACKIYNHFHKNT 611
           GI +K+A  + +   +++
Sbjct: 577 GIPEKVAQALLDKLSQDS 594


>gi|148239605|ref|YP_001224992.1| excinuclease ABC subunit C [Synechococcus sp. WH 7803]
 gi|147848144|emb|CAK23695.1| Nuclease subunit of the excinuclease complex (Excinuclease ABC
           subunit C) [Synechococcus sp. WH 7803]
          Length = 652

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 185/632 (29%), Positives = 299/632 (47%), Gaps = 27/632 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            +++P  PG Y M D   R+LYVGK+ +L+ R++SY  S +  + RI  M+ QI +I F 
Sbjct: 15  LKEIPTEPGCYLMRDGDDRLLYVGKSKSLRSRVRSYFRSRHDLSPRIRLMVRQICDIEFI 74

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT +E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 75  VTDSEAEALALESNLIKNQQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 134

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R F LR     +   RT  CL + I RC G C  +I+S+ 
Sbjct: 135 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHPDRT--CLNYSIGRCPGVCQEKITSDD 192

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   + +      G +  L+  +   M++   + D+E+A   RD+L  L  +        
Sbjct: 193 YHRTLRKVAMVFQGRSDELQTLLHAQMDRYAERLDFEAAAKIRDQLQGLDQLTADQKMSL 252

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++  +  LA +Q      G+  G   +     ++ +   +       +  
Sbjct: 253 PDSSVSRDVIAMAGDDRLAAVQLFQMRAGKLVGRLGYLADASNQPSGLTLQKVIEEHYSQ 312

Query: 296 --DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                 P  +L+     + +L+E    +Q   KV+I  PKQ +K  +IE    NA     
Sbjct: 313 VDSVEIPPELLVQHSLPQQTLIEEWLSEQRERKVQIHCPKQRQKADLIELVQRNADYELQ 372

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +    +    +  +D  +   LP  P+RIE YD SHI G  AV   VV  +    K  YR
Sbjct: 373 RAKQGQEQQALATEDLAQLLELPVPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHYR 432

Query: 414 KFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENL--------NFHPKKQEYSFPSW 463
           K+ +  + ++     D   M  ++ RRF +  + + +               Q      W
Sbjct: 433 KYKIRSSSIRAGHSDDFMAMAEIMRRRFRRWARAKRDGVDVGALRQKGGSALQTDGLNDW 492

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PDVV++DGGKGQLSA    L++L++   + I S+AK  +     E F   + + L  +  
Sbjct: 493 PDVVMIDGGKGQLSAVMEALRELDLHEDLNICSLAKQRE-----EIFLPGESQPLDTDQD 547

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
              +  ++RLRDEAHRFA++ HR++R  +   S L +I G+GP R + LL  F ++  I 
Sbjct: 548 QLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGVGPKRVKDLLAHFHSIDAIQ 607

Query: 583 RSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            +S ETLA   G+   +A  I   FH      
Sbjct: 608 LASVETLAKAPGVGLALARDIRRFFHPEEDTQ 639


>gi|307243307|ref|ZP_07525474.1| excinuclease ABC, C subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306493325|gb|EFM65311.1| excinuclease ABC, C subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 605

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 198/622 (31%), Positives = 322/622 (51%), Gaps = 41/622 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            + +P  PGVY M D  G V+YVGKA +L+ R++ Y  S+ NH+ ++  M+  I++  + 
Sbjct: 8   LKSLPASPGVYIMKDRYGNVIYVGKAVSLKNRVRQYFRSSKNHSDKVRSMVKNISSFEYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T +E+EAL+LE N+IK+ KP++NILLRDDK++PYI +T     P + K R     +  Y
Sbjct: 68  MTDSELEALILECNLIKKYKPKYNILLRDDKTYPYIKVTVNEDYPRVLKVRRILKDKAKY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           FGP+++V AV  TI+ ++  + +R+C    D   R   RPCL + IK+C GPCTG +S E
Sbjct: 128 FGPYSNVFAVNDTIDIIRNIYPIRTCNIDMDKAIRTGMRPCLNYHIKKCIGPCTGIVSRE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +YM+ + E   FLSG    L   +   M  A+   D+E A  +RD++ +L  +       
Sbjct: 188 EYMDMIDEILLFLSGKEDKLVGILEEKMKLASQNLDFEEAASYRDKINSLKDVMEKQKIS 247

Query: 239 Y----NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                +  D  ++ +    AC+Q  F   G+  G   F L+   +S  + IL  F++QFY
Sbjct: 248 NVQNDSDQDVIAMANLDQEACVQVFFIRNGKVSGRENFMLEGVKDSDRSTILGSFIKQFY 307

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +   P  +++ EE  +  ++E     + G  V I VPK+G+KR ++     NA     
Sbjct: 308 MSQEYIPRELIVEEEFLDMEIMEEILESKRGASVNIRVPKRGDKRALVLMVRKNADEYLV 367

Query: 354 QKLSTEISHQMI----LKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +    +          L++  K   L     +RIE YD S+I G  ++G MVV       
Sbjct: 368 KFDDLKKKKYEKSLGSLEELAKILGLDAKNLQRIEAYDISNIQGVDSIGTMVVYTNGVKD 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K +YR+F +    V+  DD A M  VL+RR                       + PD+++
Sbjct: 428 KKEYRRFKIKT--VEGPDDYASMAEVLDRRLKH-------------------GNLPDLIL 466

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           LDGGKGQ+SA + V++       I +  + K  K         +   + + L+    +  
Sbjct: 467 LDGGKGQVSAVKKVMEDNG--ENIPLWGMYKDDKHRTKG---LLNGDKTVELDRTTSLYR 521

Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           F+  +++E H ++I+ HR  R KK   S LD+I GIGP RKR+L+  F  +  I R++ E
Sbjct: 522 FVAGIQEEVHNYSISYHRSLRDKKMTKSILDDIPGIGPKRKRVLMDRFKDIDNIKRANKE 581

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            L +I+GI++++A  I  + ++
Sbjct: 582 DLVAIDGITERLAEDILRYINR 603


>gi|83816797|ref|YP_445701.1| excinuclease ABC, C subunit [Salinibacter ruber DSM 13855]
 gi|119367832|sp|Q2S280|UVRC_SALRD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|83758191|gb|ABC46304.1| excinuclease ABC, C subunit [Salinibacter ruber DSM 13855]
          Length = 633

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 179/637 (28%), Positives = 303/637 (47%), Gaps = 45/637 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRF 60
             + +P  PGVY+ LD    VLYVGKA NL+ R+++Y   +     RI  M+ +  ++  
Sbjct: 15  KLDALPTDPGVYKFLDDEESVLYVGKAKNLRNRVRTYFQQSRQRDGRIEVMVQKAVDVDI 74

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE EAL+LE N IK L+PR+N+ LRDDK++PYI I    + P ++K R        
Sbjct: 75  IVTDTEAEALILENNQIKELQPRYNVNLRDDKTYPYICI-KNERFPRVFKTRTVKQDGSE 133

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+A V  +   +++++  F LR+C+     + +   +   CL   I  C  PC G+ 
Sbjct: 134 YFGPYADVSKMNSMMDAIRSVFQLRTCSLDLTEEKIEAGKYDVCLQHHIDNCKAPCVGKQ 193

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S   YME + + KK L+G    L + +   M + +   ++E A   RD++ AL       
Sbjct: 194 SEADYMETIEQVKKLLNGQTQELMDLLKDEMQRQSDAHNFEEAARLRDQVKALKDYSQQQ 253

Query: 236 DS---IYNRMDCFSLY--HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                 +   D F+L+   ++++ C        G+  G    FL++  E ++A+++   +
Sbjct: 254 KVVSQDFADRDVFALHVERDEDIGCGVLFQVREGKMIGKRHKFLRSVEERSDAELILSLV 313

Query: 291 RQFYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITV-----PKQGEKRKIIEQA 344
             +Y +    PE +LLS +  +    +    ++   + +        P++GEK  ++  A
Sbjct: 314 ENYYAEANFYPEEVLLSHDPNDHPAQDTHALEELLRQEQGHQVPIKVPQRGEKASLVRMA 373

Query: 345 LINAHRSHTQKLSTEISHQM-----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
             NA     +  + ++  +       +K   +   +   P+R++  D SH  G   V   
Sbjct: 374 TSNAKLQVGEWKTQQMKRERNRIPESIKALGEALNMEAPPRRVDGIDVSHHGGKETVASC 433

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           VV  +    K+ YR + +   +  T DD                   E +    ++    
Sbjct: 434 VVFTDATPRKSDYRTYKIRSTEEGTPDDY--------------KAMREVVRRRYRRMVEE 479

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519
              WPD+V++DGGKGQLS+A  +LK++   +R  +I +AK  +     E +     + + 
Sbjct: 480 DGPWPDLVVIDGGKGQLSSAVEMLKEVGAFDRFPVIGLAKRLE-----EVYRPGDSDPVF 534

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTV 578
           L    P L  +Q++RDEAHRFA+T  RKRR KK   S L +I+GIGP   + LL  FG+ 
Sbjct: 535 LAKDSPALQLLQKVRDEAHRFAVTYQRKRRKKKTLQSELLDIHGIGPKTAKKLLGEFGSA 594

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
             +  +  E LA + G     A  I +++ +  +  P
Sbjct: 595 AKVKEADEEALAEVVG--PAKAETITDYYDETEAPAP 629


>gi|255038775|ref|YP_003089396.1| excinuclease ABC, C subunit [Dyadobacter fermentans DSM 18053]
 gi|254951531|gb|ACT96231.1| excinuclease ABC, C subunit [Dyadobacter fermentans DSM 18053]
          Length = 603

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 176/621 (28%), Positives = 307/621 (49%), Gaps = 53/621 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
           ++P  PGVY+  D  G V+YVGKA +L+ R+ SY   NN H  +   ++SQI  I +T+ 
Sbjct: 12  KIPLDPGVYRYFDETGEVIYVGKAKSLRNRVSSYFSKNNQHDRKTRRLVSQIRRIEYTIV 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E +ALLLE  +IK+L+P+FNILL+DDK++P+I +T     P ++  R+    +G+++G
Sbjct: 72  LSEWDALLLENQLIKQLQPKFNILLKDDKTYPFICVT-DEPFPRVFPTRNMDRTKGTFYG 130

Query: 124 PFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           PFA++ ++   ++  +     R+  L     ++   + + CL + I  C GPC G    +
Sbjct: 131 PFANLRSMHTLLDMFKALYQIRSCQLPLNKSNIEAGKFKVCLEYHIGNCKGPCEGFQGQD 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y   + +    L G   + ++     M +A  +  +E A   + ++  LS+ Q+     
Sbjct: 191 EYNAEIEQVHNILKGNLSSPQQYFKEKMLEAAEQMAFEKAHAWKTKIEHLSNFQSKATVI 250

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                 +D  ++  +   A +       G    T T  +K   + ++ +IL+  + +  +
Sbjct: 251 NPRIGNIDVLTIVSDDEAAYLNFMKIKQGYMVATQTLEVKKKLDESDLEILAMMIVEMRS 310

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   L+S    +  +           ++ +TVP+ G+K+K+++ ++ N      ++
Sbjct: 311 TYGSEARELVSNLKPDLDM-----------RLDVTVPQIGDKKKLLDMSMKNVMYFRRER 359

Query: 356 LST--------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                            +L        +  +P+ IE +DNS+I G + V  MV   +   
Sbjct: 360 TERREVEASATTSKKDRVLIRLKADLQIKTLPRHIECFDNSNIQGTNPVASMVCFKDGKP 419

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K  YR FN+    V   +D A M  ++ RR+ +LI  E+ L              PD++
Sbjct: 420 SKKDYRHFNIKT--VIGPNDFASMNEIVSRRYLRLIAEEQPL--------------PDLI 463

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           ++DGGKGQL AA   LK L +  ++ II IAK  +     E +F +    L ++ R   L
Sbjct: 464 VVDGGKGQLGAACDALKSLGIYGQVPIIGIAKRLE-----EIYFPEDPLPLYIDKRSESL 518

Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             IQ++RDEAHRFAIT HR +R K +  S L+ + G+G +    LL+ FG+V+ I  SS 
Sbjct: 519 KLIQQIRDEAHRFAITFHRDKRSKASLVSELEGVVGVGKVTATKLLKHFGSVRAIRESSL 578

Query: 587 ETLASIEGISKKIACKIYNHF 607
           ETL  + G+ +  A K+  +F
Sbjct: 579 ETLTDLVGLDR--AKKVRAYF 597


>gi|198274091|ref|ZP_03206623.1| hypothetical protein BACPLE_00228 [Bacteroides plebeius DSM 17135]
 gi|198273169|gb|EDY97438.1| hypothetical protein BACPLE_00228 [Bacteroides plebeius DSM 17135]
          Length = 610

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 176/622 (28%), Positives = 317/622 (50%), Gaps = 48/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY   ++ + +   ++S+I +IR+ V  
Sbjct: 20  NLPEGPGIYQYLNKEGVIIYVGKAKNLKRRVYSYFSKDHQSAKTRMLVSKIADIRYIVVN 79

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE N+IK+ KPR+N+LL+DDK++P I I++    P +YK R       +YFGP
Sbjct: 80  SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICISN-EYFPRIYKTRKIIRDGSNYFGP 138

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ V ++   +  +++ + LR+C      +++ + + + CL + IK C GPC G+ S E+
Sbjct: 139 YSHVPSMMALLELIKKLYPLRTCHLALTPENIAQGKFKVCLEYHIKNCKGPCIGKQSHEE 198

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           YM+ + +A++ L G    +   +   M     +  +E A   +++   +   +  ++   
Sbjct: 199 YMQQIAQARELLKGNTQKVSNALMEEMKCLAEEMKFEEAQKLKEQYMLIESYRAKSEVVS 258

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            + + +D FS+  ++N A I       G      TF  K     +  ++L   + +    
Sbjct: 259 SVLHHIDVFSIETDENTAYINYLHITNGCINQAFTFEYKVRMNESKEELLQLGIVEMRER 318

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            K   + I++  E +                V  T+PK+GEK+ +++ +L+N  +    +
Sbjct: 319 YKSTSKEIIVPFELDMEM-----------NGVTFTIPKKGEKKHLLDLSLMNVKQYKVDR 367

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+   +  L  +P  IE +DNS+I G  AV   VV  +    K
Sbjct: 368 LKQAEKLNPEQRSVRLMKEIQAQLQLEKMPNHIECFDNSNIQGSDAVAACVVFKKAKPSK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+ +    V   DD A M+ V+ RR+S++++ +  L              PD+++ 
Sbjct: 428 KDYRKYLIKT--VVGPDDYASMQEVVRRRYSRILEEQGEL--------------PDLILT 471

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +  +I I+ +AK  +     E  F    + L +    P+ + 
Sbjct: 472 DGGKGQMEVVRQVIED-ELHLQIPIVGLAKNNRHRTS-EVLFGFPPQTLGIKQGTPLFHL 529

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           ++ ++DE HRFAIT HR++R K+   S LD I GIG  RK  LL+ F +V  I ++S E 
Sbjct: 530 LENIQDEVHRFAITFHREKRSKSQIASALDNIKGIGDKRKTALLKKFKSVARIRQASLEE 589

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           +A +  I +  A  +     ++
Sbjct: 590 IAEV--IGESAAKSVKESLSES 609


>gi|55821309|ref|YP_139751.1| excinuclease ABC subunit C [Streptococcus thermophilus LMG 18311]
 gi|81560416|sp|Q5M3R7|UVRC_STRT2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|55737294|gb|AAV60936.1| excinuclease ABC subunit C [Streptococcus thermophilus LMG 18311]
          Length = 595

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 171/618 (27%), Positives = 297/618 (48%), Gaps = 39/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPNNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+   P+FNI L+D KS+P+I IT K   P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIQENMPKFNIRLKDGKSYPFIKIT-KELYPRLLITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + I +C        +   + 
Sbjct: 126 FGPYPDAGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCKAHTICHTTEAYWQ 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238
             V + K FL+G +  +  ++   M   + + ++E A  +RD + A+S ++         
Sbjct: 182 GLVEDVKNFLNGHDDKIVNQLKAKMKDMSDQMEFERAAEYRDLIEAVSTLRTKQRVIRQD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +         +   
Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYLDSRHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I +  + ++ S+  +   +     VK+  P++GEK++++  A+ NA     +    
Sbjct: 302 KPKEIFIPGDIDQESVEALVGNE-----VKVFKPQRGEKKQLVNLAMKNARVSLTQKFDL 356

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   Q  +++  K   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 357 LEKDIAKTQGAIENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V+  DD A MR V+ RR+S++ ++                + PD++I+DGG+G
Sbjct: 416 YKIKT--VEGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIMDGGQG 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ VL+   +   I +  + K  K     E  F      + L  +    + + R++
Sbjct: 460 QVNVAKDVLRN-ELNLSIPVAGLQKNDKHQT-NELLFGDPLRVIDLPRQSEEFFLLHRIQ 517

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD + G+GP RK+ LL++F ++  I ++S E + ++ 
Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKNFKSMTAIQQASVEDIQAL- 576

Query: 594 GISKKIACKIYNHFHKNT 611
           GI +K+A  + +   +++
Sbjct: 577 GIPEKVAQALLDKLSQDS 594


>gi|22537378|ref|NP_688229.1| excinuclease ABC subunit C [Streptococcus agalactiae 2603V/R]
 gi|81454002|sp|Q8DZ90|UVRC_STRA5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|22534251|gb|AAN00102.1|AE014247_17 excinuclease ABC, C subunit [Streptococcus agalactiae 2603V/R]
          Length = 593

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 172/615 (27%), Positives = 293/615 (47%), Gaps = 41/615 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R+KSY H +++T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVKSYFHGSHNT-KTELLVSEIEDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+PYI IT+  + P L   R      G+Y
Sbjct: 67  VTTSNTEALLLEINLIQENMPKYNIRLKDDKSYPYIKITN-ERYPRLMITRQVKKSDGTY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C+     + +   + 
Sbjct: 126 FGPYPDSGAATEIKRLLDRLFPFKKCTNP----ANKVCFYYHLGQCNAHTVCQTNKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
               + K+FL+G ++ +   +   M  A +  ++E A  +RD + A+S ++     I+  
Sbjct: 182 SLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQD 241

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  + +K   C+Q  F   G+            +E     +         T   
Sbjct: 242 MKDRDVFGYFVDKGWMCVQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + ++ +  S+  I          KI  P++GEK++++  A+ NA     +    
Sbjct: 302 LPKEVFIPQDIDAKSVETIV-------GCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++      +P    RIE +DNS+I G S V  MVV       K  YRK
Sbjct: 355 LEKDIRKTHGAIENLGNLLNIPKPV-RIEAFDNSNIQGTSPVAAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K+                + PD++++DGG+G
Sbjct: 414 FKIKT--VIGPDDYASMREVIHRRYSRVLKDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +      I I  + K  K     E  F    E + L       + + R++
Sbjct: 458 QVNIARDVI-ENQFGLAIPIAGLQKNDKHQT-HELLFGDPLEVVELPRNSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD I G+GP RK+LL++ F ++  I ++  E +    
Sbjct: 516 DEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSLPNIQKAEIEDIIM-C 574

Query: 594 GISKKIACKIYNHFH 608
           GI + +A  + +  +
Sbjct: 575 GIPRTVAESLRDSLN 589


>gi|157964710|ref|YP_001499534.1| excinuclease ABC subunit C [Rickettsia massiliae MTU5]
 gi|157844486|gb|ABV84987.1| Excinuclease ABC subunit C [Rickettsia massiliae MTU5]
          Length = 629

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 234/632 (37%), Positives = 349/632 (55%), Gaps = 40/632 (6%)

Query: 1   MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+ +  PE  GVY+M D+  +V+YVGKA NL+KR+ +Y   ++  ++   MI+    +
Sbjct: 13  IKSKLIDAPERSGVYRMFDVNKQVIYVGKAKNLKKRLTNY-IKSDLDNKTLRMIANTCFV 71

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I +   H  P L K+R  +   
Sbjct: 72  EYSITNSEVEALLLEAQLIKKFQPKFNILLKDYKSFPFIKLRLDHDFPQLLKYRGKTLSD 131

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G +FGPFAS   V  T+  LQ+ F LRSC D+ F  RTRPCL ++IKRC  PC G+I+ E
Sbjct: 132 GKFFGPFASSAEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 191

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V + K FL G    L+E ++R M + + +  +E A   RDR+ ALS++Q      
Sbjct: 192 VYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 251

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++       C++   +  GQ  G   +F  +   ST  ++L YFL QFY  
Sbjct: 252 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 311

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  I+++ E  +  ++E         ++ ITVP +G K K+++ A  NA  S  Q L
Sbjct: 312 QHVPAEIIINHEINDKEVIEAIKKINNILQLNITVPNKGGKAKLVQNAETNALFSLEQYL 371

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                +Q I+ +  + F L  IP+RIEIYDNSHI G  AVG MVV G+ GF K +YR FN
Sbjct: 372 KKFAKNQEIMFEIKELFGLSEIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVFN 431

Query: 417 LHPNDV------------------KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY 458
           ++   +                     DD  M+R VL RR ++L +              
Sbjct: 432 VNAPSLVCHSRESGNDGIKNCGGDIKGDDYEMLRQVLTRRLARLRQE------------- 478

Query: 459 SFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEAL 518
                P ++I+DGGKG L   + V+ KL  E  I  + ++KG  R+AG+E+F V   E  
Sbjct: 479 -PHKLPSLMIIDGGKGHLGVVKEVMDKL--EMNIPFVCMSKGVDRNAGLEQFHVIGKEVF 535

Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGT 577
            L+   P++ ++Q LRDEAH FAI  HR  R +A   S LD+I G+G  RK+ LL  FG+
Sbjct: 536 TLDKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISSLDDIEGVGATRKKALLHYFGS 595

Query: 578 VKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            K +  ++ + LA + GI+K +A  I+N  H+
Sbjct: 596 YKAVCDATIDELAKVNGINKSLAEMIFNVLHR 627


>gi|313676650|ref|YP_004054646.1| excinuclease ABC, c subunit [Marivirga tractuosa DSM 4126]
 gi|312943348|gb|ADR22538.1| excinuclease ABC, C subunit [Marivirga tractuosa DSM 4126]
          Length = 602

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/623 (30%), Positives = 309/623 (49%), Gaps = 48/623 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +P+ PGVY+  + +G ++YVGKA NL+ R+ SY + + NH  +   ++ +I  I   + 
Sbjct: 14  DLPQLPGVYKFHNSSGVIIYVGKAKNLKNRVTSYFNKSANHNRKTIRLVREIEKIEIAIV 73

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E +ALLLE ++IK L+P++NILL+DDKSFPY+ IT+    P +   R      G+YFG
Sbjct: 74  NSEFDALLLENSLIKELQPKYNILLKDDKSFPYLCITN-EPFPRIISTRRRIARNGTYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+ASV A+   +  +++ + +R+C       ++   + + CL + I  C GPC G     
Sbjct: 133 PYASVRAMNNVLELIRKLYTIRTCKLNLSDQNIKAGKFKVCLEYHIGNCKGPCEGLQKHA 192

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y   + +A + L G  +  K+    NM +A  + ++E A  ++++L  L    + +   
Sbjct: 193 EYQNDIDQAAEILKGNLNIPKQHFKENMQKAAEQLNFEKAQSYKEKLELLEKFHSKSLVV 252

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           ++    +D  S+      A +       G    T T  LK   + T+ ++L   L +   
Sbjct: 253 NAKLTDIDVCSIISEDKYAFVNYMRIKNGSINVTKTIELKKKLDETDQELLLLALIELRK 312

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351
                       E+    +L                P+ G+K+K++E +L NA       
Sbjct: 313 ----------IYESNTNEILTNIDITNPPETFHFIKPQIGDKKKLVEMSLKNALFFKKEK 362

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             Q  S++I    +LK       L  +P +IE +DNS++ G +    MV        K++
Sbjct: 363 LNQNESSKIKELRVLKQLQSDLRLKELPIKIECFDNSNMQGTNPTASMVHFKNGRPKKSE 422

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR +++    V   DD A M  ++ RR+ +L++ ++ L              P+++++DG
Sbjct: 423 YRHYHVKT--VIGPDDFASMTEIVGRRYKRLVEEQQEL--------------PNLIVIDG 466

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQLSAA   L KLN+   I II IAK  +     E +F +    + ++ +   L  +Q
Sbjct: 467 GKGQLSAAVKALNKLNLYGNIPIIGIAKRLE-----EIYFPEDPYPVHISKKSESLKLLQ 521

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           RLRDEAHRFAIT HR+ R K ++ S L+ I GIG      LL  F +VK I  +S E L+
Sbjct: 522 RLRDEAHRFAITFHRQIRSKNSFTSELEGIEGIGEKTIDQLLAHFKSVKKIKEASFEKLS 581

Query: 591 SIEGISKKIACKIYNHFHKNTSH 613
           +I G SK  A +I   F +    
Sbjct: 582 TIIGNSK--AEQIIKAFKQKKED 602


>gi|323127427|gb|ADX24724.1| excinuclease ABC subunit C [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 594

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 175/613 (28%), Positives = 285/613 (46%), Gaps = 39/613 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-ETFPRLLITRQIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + V     + C  + + +C            + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPV----NKVCFYYHLGQCCAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V + K FL+G +  + + +   M  A+ +  +E A  +RD ++ ++ ++     +   
Sbjct: 182 GLVEDVKHFLNGKDDKIIDGLRAKMLAASEEMAFERAAEYRDLISGIAIMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  + +K   C+Q  F   G+            +E+    +             
Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNEAEEDFLTYMGQFYQDKQHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH---RSHTQK 355
            P+ + + E  +E  +  I   K          P++GEK++++  A  NA    +     
Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PQRGEKKQLVALATKNARVSLQQKFDL 354

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L  +I       D          P RIE +DNS+I G S V  MVV  +    K  YRKF
Sbjct: 355 LEKDIKKTSGAIDNLGYLLGIDKPVRIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRKF 414

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    V   DD A MR V+ RR+S++                     PD++I+DGG GQ
Sbjct: 415 KIKT--VAGPDDYASMREVIFRRYSRVKHEG--------------LVAPDLIIIDGGIGQ 458

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++AA+ V++   +   I I  + K  K     E  F K  E + L       + + R++D
Sbjct: 459 VNAAREVIED-RLGLTIPIAGLQKNDKHQT-HELLFGKPLEVVPLPRNSEEFFLLHRIQD 516

Query: 536 EAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HRFAIT HR+ R K ++S  LD+I G+GP RK++LL+ F T+  I+ +SP+ + S+ G
Sbjct: 517 EVHRFAITFHRQVRSKNSFSSKLDKIPGLGPKRKQILLKHFKTMTAIAAASPDEIHSL-G 575

Query: 595 ISKKIACKIYNHF 607
           I + +A  ++ H 
Sbjct: 576 IPRAVASAVHQHL 588


>gi|326575078|gb|EGE25006.1| excinuclease ABC subunit C [Moraxella catarrhalis CO72]
          Length = 616

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 207/617 (33%), Positives = 313/617 (50%), Gaps = 32/617 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +  +P  PG+Y+ML  +G +LYVGKA +L+ R+ SY        +   ++ +I  I   +
Sbjct: 22  ANTLPNRPGIYKMLGKSGEILYVGKAKSLKNRVGSYFAKTIEHPKTQALVQRIEQIEIII 81

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSY 121
           T  E EALLLE N+IK  +P +N+LLRDDKS+ YI I+   K P L   R      QG +
Sbjct: 82  TRGETEALLLEQNLIKNHRPPYNVLLRDDKSYLYIYIST-DKFPRLSIGRGKGRYTQGRF 140

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ S    ++++  +QR F +RSC +S F  R RPCL +QIKRC  PC G +S+E+Y 
Sbjct: 141 FGPYPSARNAKESVQLMQRLFMIRSCTNSFFAQRQRPCLEYQIKRCKAPCVGMVSAEQYQ 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239
             V  A  FL G +H ++  + + M +A    ++E A  +RDRLA +S +Q         
Sbjct: 201 SDVRAALAFLQGHSHEVQAILVKKMEEAAAALNFEQAAFYRDRLAMISDLQAKQAVFRLQ 260

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTD- 296
              D F++  +     +       GQ  G   +F      +  +N + L  FL  FY   
Sbjct: 261 GEADVFAIAADAGAVAVCVLTVRGGQVLGVKNYFPDDIEPAIKSNQERLKEFLLSFYFQV 320

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ I+ S   EE S+L      Q+G +  I       +   +  A +NA+ + + K
Sbjct: 321 SDDLPDEIISSVAIEEASILADILQVQFGKRTTIKHKVTTHRDDWLSIANLNANNALSAK 380

Query: 356 LSTEISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           L      Q   +   +           RIE +D SH MG +A+G  VV  +NG  K  YR
Sbjct: 381 LKDSRELQARFEQLKQVLAPITTCTIDRIECFDISHTMGEAAIGSCVVFDQNGPKKRDYR 440

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++ +H   +   DD A MR VL RR+++                      PD++++DGGK
Sbjct: 441 QYAIHD--ITAGDDYAAMRQVLMRRYTK-------------------HPLPDLLLIDGGK 479

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQL+ A  VL +L       ++ +AKG  R AG+E       E + L      L+ I ++
Sbjct: 480 GQLNVAIEVLSELGKLTDTLLVGVAKGEGRKAGLEVLHFVTHEPIDLPADSKALHLIMQI 539

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT HRK+R KK + S L+ I G+G +R+R LL  FG ++ +  +S + +A +
Sbjct: 540 RDEAHRFAITAHRKKRDKKRSSSVLEVIPGLGQVRRRDLLNHFGGIQQLLGASQDEIAQV 599

Query: 593 EGISKKIACKIYNHFHK 609
           +GI   +A  IY   H+
Sbjct: 600 KGIGPMLAGTIYKALHE 616


>gi|284045984|ref|YP_003396324.1| excinuclease ABC, C subunit [Conexibacter woesei DSM 14684]
 gi|283950205|gb|ADB52949.1| excinuclease ABC, C subunit [Conexibacter woesei DSM 14684]
          Length = 647

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 202/615 (32%), Positives = 300/615 (48%), Gaps = 19/615 (3%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PGVY   +    V+YVGKA +++KR+ S+  SN  T     ++  I+ I   V  T
Sbjct: 38  LPDQPGVYLFRNAKSTVIYVGKAKSIKKRVASHF-SNPSTQMGRDLLPMIDRIESLVVST 96

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALL E N IK+ KPRFNI LRDDKS+PYI I+     P +Y  R+    + +YFGP+
Sbjct: 97  EAEALLAEQNFIKQYKPRFNIRLRDDKSYPYIGISLDEDFPRVYFTRERHRRERAYFGPY 156

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEKYMEFV 184
           ++   V +T++ L + F  RSC       R+  PCL + IKRC  PC   ++ E Y   +
Sbjct: 157 SNAKRVRETLDLLGKIFLFRSCDGPTPGRRSGSPCLDYYIKRCEAPCVDYVTKEHYRTSI 216

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241
                FLSG    ++  I  NM  A  ++ +E A   R+RL ++  +             
Sbjct: 217 DGVIDFLSGRYRAIEAAIEANMKDAAAEQRFEDAARERNRLRSIRSLLERQRVTNASGGT 276

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-PCP 300
           +D  ++    N A  Q      G       F+L   +      +   FL Q+Y      P
Sbjct: 277 LDAIAIAVEGNDANAQVFQIRDGVLSDRQGFYLDNQAGDDLPAVAEAFLLQYYGSSLMIP 336

Query: 301 ENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
             +++  E  E    +  +  ++ G  V++   ++G+KR+I+E A  NA  +  Q+    
Sbjct: 337 PLLVVQREVGEAAQTIAAALAERRGGPVELRAAERGDKRRILELAERNARLALDQERLRS 396

Query: 360 ISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
              +      L+       L  IP R+E +D SH+ G   V  MVV       K  YR+F
Sbjct: 397 ERRRQQRVDALEGLQAALGLDAIPLRLECFDISHVGGTHTVASMVVFEAGAPKKADYRRF 456

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            L        DD A M  VL RR +Q  +  +   F     + SF S P+VV++DGGKGQ
Sbjct: 457 TLREGVEGVPDDFASMEEVLSRRLAQYERQHDRSPFDD-GYDASFASLPNVVVIDGGKGQ 515

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           LSA   VL        +TI+S+AK  +     E F   +   +VL    P L  +QR+RD
Sbjct: 516 LSAGMRVLDGFR-RRGVTIVSLAKRIE-----EVFVPGREAPIVLPHDTPELQLLQRIRD 569

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI  HR RR +    S LD + G+GP RKR LL+ FG+ +    ++ E L ++ G
Sbjct: 570 EAHRFAIGHHRIRRDRAMTTSVLDSLPGVGPARKRALLKHFGSPEAFLAATREELEAVPG 629

Query: 595 ISKKIACKIYNHFHK 609
           +  K+A  +Y   +K
Sbjct: 630 LPGKVARDLYVQINK 644


>gi|313888507|ref|ZP_07822174.1| excinuclease ABC, C subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845536|gb|EFR32930.1| excinuclease ABC, C subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 620

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 199/620 (32%), Positives = 324/620 (52%), Gaps = 27/620 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61
            +++P+ PGVY M +    ++YVGKA +L+KR++ Y  S    + ++  M+S+I++  + 
Sbjct: 8   LDKLPDKPGVYIMKNELDEIIYVGKAKSLRKRVRQYFGSYGKSSKKVASMVSKIHDFEYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   EVE+L+LE+N+IK   P++NILLRDDK +PYI +    + P + K R  +     Y
Sbjct: 68  IVENEVESLVLESNLIKDNLPKYNILLRDDKQYPYIKVKVNERFPRVMKTRRVAKDGAKY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           FGP+  V AV  +I + +R + LR+C    ++V     RPCL + I +C GPCTGE+  E
Sbjct: 128 FGPYPDVFAVNGSIETFERIYPLRTCNLNLENVEEKPFRPCLNYYIGKCLGPCTGEVKDE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y   V E   FLS  N  L +K+   M   +   DYE+A   RDR+  L +++      
Sbjct: 188 DYNLMVDEVLSFLSSSNSKLVDKLHEKMMDYSRNLDYENAADIRDRIKNLEYLKERQLIS 247

Query: 239 ----YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                +  D  +L    +   IQ  FF  G+  G   + ++     +  +I S F++QFY
Sbjct: 248 DPEANDDKDIIALAKGIDEVLIQIFFFRNGKIIGREHYMIRDYYNDSYEEIFSSFIKQFY 307

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----H 349
                 P+ +++ E+  +  LLE    ++ G KV I VP +G K++++     NA     
Sbjct: 308 IGASYIPKELIIEEKPLDIKLLEDWLTEKRGNKVNIVVPIKGNKKELVRMVKRNALDMIE 367

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +   +      +++  L+D      L   P+RIE YD S+I G  +VG MVV  +    K
Sbjct: 368 KYGDKFKKRAETNKKALEDIRDLLGLNETPRRIEAYDISNISGVESVGSMVVFEDGDSKK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           + YRKF +    V   DD + ++ V+ERRF++ ++           +  SF ++PD++++
Sbjct: 428 SDYRKFRIKS--VVGPDDYSSLKEVIERRFTRGVEE------KKTSKSSSFSNFPDLIMM 479

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ++AA+ +L KLN+   + I  + K            +   E   +++       
Sbjct: 480 DGGKGQVNAAKEILDKLNL--NLEICGLVKDDFHKTRG---IIYNNEEFKIDLNSRAYKM 534

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I ++++EAHRFAI  HR  R K    S LD+I  IGP RK  LL+ F ++  I  +S E 
Sbjct: 535 IYKIQEEAHRFAINYHRNLRTKTMFKSELDDIKLIGPKRKENLLKHFRSIDKIKNASLEE 594

Query: 589 LASIEGISKKIACKIYNHFH 608
           L  +E +++  A  IY HF 
Sbjct: 595 LMEVESMNEASANSIYQHFR 614


>gi|116628039|ref|YP_820658.1| excinuclease ABC subunit C [Streptococcus thermophilus LMD-9]
 gi|122267365|sp|Q03K10|UVRC_STRTD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|116101316|gb|ABJ66462.1| Excinuclease ABC subunit C [Streptococcus thermophilus LMD-9]
 gi|312278636|gb|ADQ63293.1| Excinuclease ABC subunit C [Streptococcus thermophilus ND03]
          Length = 595

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 173/618 (27%), Positives = 297/618 (48%), Gaps = 39/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPSNPGCYLHKDKFGNIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+   P+FNI L+D KS+P+I IT K   P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIQENMPKFNIRLKDGKSYPFIKIT-KELYPRLLITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + I +C+       + + + 
Sbjct: 126 FGPYPDSGAANEIKKLLDRIFPFKKCKNP----ANKVCFYYHIGQCNAHTICHTTEDYWQ 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238
             V + K FL+G +  +  ++   M   + +  +E A  +RD + A+S ++         
Sbjct: 182 GLVEDVKNFLNGHDDKIVNQLKAKMKDMSDQMAFERAAEYRDLIEAVSTLRTKQRVIRQD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +         +   
Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYMGQFYLDSRHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ I +  + ++ S+  +   +     VK+  PK+GEK++++  A  NA     +    
Sbjct: 302 KPKEIFIPGDIDQESVEALVGDE-----VKVFKPKRGEKKQLVNLATKNARVSLTQKFDL 356

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   Q  +++  K   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 357 LEKDIAKTQGAIENLGKLMGIPTPV-RIESFDNSNIMGTSPVSAMVVFENGKPNKKEYRK 415

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V+  DD A MR V+ RR+S++ ++                + PD++I+DGG+G
Sbjct: 416 YKIKT--VEGPDDYASMREVIRRRYSRVKRDG--------------LTPPDLIIMDGGQG 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ VL+   +   I +  + K  K     E  F      + L  +    + + R++
Sbjct: 460 QVNVAKDVLRN-ELNLSIPVAGLQKNDKHQT-NELLFGDPLRVIDLPRQSEEFFLLHRIQ 517

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K ++S  LD + G+GP RK+ LL++F ++  I ++S E + ++ 
Sbjct: 518 DEVHRFAITFHRQVRSKNSFSSKLDGVEGLGPKRKQKLLKNFKSMTAIQQASVEDIQAL- 576

Query: 594 GISKKIACKIYNHFHKNT 611
           GI KK+A  + +   +++
Sbjct: 577 GIPKKVAQALLDKLSQDS 594


>gi|205374376|ref|ZP_03227174.1| excinuclease ABC subunit C [Bacillus coahuilensis m4-4]
          Length = 572

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 178/587 (30%), Positives = 296/587 (50%), Gaps = 42/587 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY   + H  +   ++ +I N  + VT +
Sbjct: 12  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFTGS-HDGKTQRLVGEIENFEYIVTSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           ++EAL+LE N+IK+  P++N++L+DDK++P+I +T   + P L   R     +G YFGP+
Sbjct: 71  DLEALILELNLIKKHDPKYNVMLKDDKTYPFIKLT-AERHPRLITTRKVKKDKGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L R + LR C         R CL + + +C  PC  E+ ++ Y E   
Sbjct: 130 PNVGAANETKKLLDRLYPLRKCNTLP----DRVCLYYHMGQCLAPCVKEVPNDTYKEMKE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
           E  +FL+GG  ++K+++   M +A  K ++E A  +RD++  +             +   
Sbjct: 186 EITRFLNGGYKDIKKELQVKMEEAAEKLEFERAKEYRDQIQHIEATMEKQKMTQTDFTDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F     K   C+Q  F   G+            +E +   +         ++   P+ 
Sbjct: 246 DVFGYAVEKGWMCVQVFFVRQGKLIERDVSMFPIYNEPSEEFLTFLGTFYTKSNHFKPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           I L E  E   + ++   K          P++G+K+++++ A  NA  +           
Sbjct: 306 IYLPEHVEMDLVEQLLEVKT-------FQPQRGQKKQLVDLATKNAKIALGEKFALIERD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K   + + P RIE +DNS+I G   V  +VV  +    K +YRK+ + 
Sbjct: 359 EDRTIKAVENLGKAMNI-YTPFRIESFDNSNIQGADPVSALVVFIDGKPAKKEYRKYKIK 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+++++K                   PD++I+DGGKGQ+ A
Sbjct: 418 T--VKGPDDYESMREVVRRRYTRVLKEN--------------LPLPDLIIIDGGKGQIEA 461

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ +++ +L ++  I I  +AK  K +   E  +    E + L  R    Y +QR++DE 
Sbjct: 462 AREIIEDELGLD--IPIAGLAKDDKHNTA-ELLYGNPLETVPLGRRSQEFYLLQRIQDEV 518

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           HRFAIT HR+ R K A+ S LD+I GIGP RK+ LL+ FG++K I R
Sbjct: 519 HRFAITFHRQVRGKTAFQSVLDDIAGIGPKRKKQLLKHFGSLKKIER 565


>gi|326563910|gb|EGE14161.1| excinuclease ABC subunit C [Moraxella catarrhalis 46P47B1]
 gi|326566581|gb|EGE16727.1| excinuclease ABC subunit C [Moraxella catarrhalis 12P80B1]
          Length = 616

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 207/617 (33%), Positives = 313/617 (50%), Gaps = 32/617 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +  +P  PG+Y+ML  +G +LYVGKA +L+ R+ SY        +   ++ +I  I   +
Sbjct: 22  ANTLPNRPGIYKMLGKSGEILYVGKAKSLKNRVGSYFAKTIEHPKTQALVQRIEQIEIII 81

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSY 121
           T  E EALLLE N+IK  +P +N+LLRDDKS+ YI I+   K P L   R      QG +
Sbjct: 82  TRGETEALLLEQNLIKNHRPPYNVLLRDDKSYLYIYIST-DKFPRLSIGRGKGRYTQGRF 140

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ S    ++++  +QR F +RSC +S F  R RPCL +QIKRC  PC G +S+E+Y 
Sbjct: 141 FGPYPSARNAKESVQLMQRLFMIRSCTNSFFAQRQRPCLEYQIKRCKAPCVGMVSAEQYQ 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--Y 239
             V  A  FL G +H ++  + + M +A    ++E A  +RDRLA +S +Q         
Sbjct: 201 SDVRAALAFLQGHSHEVQAILVKKMEEAAAALNFEQAAFYRDRLAMISDLQAKQAVFRLQ 260

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTD- 296
              D F++  +     +       GQ  G   +F      +  +N + L  FL  FY   
Sbjct: 261 GEADVFAIAADAGAVAVCVLTVRGGQVLGVKNYFPDDIEPAIKSNQERLKEFLLSFYFQV 320

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ I+ S   EE S+L      Q+G +  I       +   +  A +NA+ + + K
Sbjct: 321 SDDLPDEIISSVAIEEASILADILQVQFGKRTTIKHKVTTHRDDWLSIANLNANNALSAK 380

Query: 356 LSTEISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           L      Q   +   +           RIE +D SH MG +A+G  VV  +NG  K  YR
Sbjct: 381 LKDSRELQARFEQLKQVLAPITTCTIDRIECFDISHTMGEAAIGSCVVFDQNGPKKRDYR 440

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++ +H   +   DD A MR VL RR+++                      PD++++DGGK
Sbjct: 441 QYAIHD--ITAGDDYAAMRQVLMRRYTK-------------------HPLPDLLLIDGGK 479

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQL+ A  VL +L       ++ +AKG  R AG+E       E + L      L+ I ++
Sbjct: 480 GQLNVAIEVLSELGKLTDTLLVGVAKGEGRKAGLEVLHFVAHEPIDLPADSKALHLIMQI 539

Query: 534 RDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAIT HRK+R KK + S L+ I G+G +R+R LL  FG ++ +  +S + +A +
Sbjct: 540 RDEAHRFAITAHRKKRDKKRSSSVLEVIPGLGQVRRRDLLNHFGGIQQLLGASQDEIAQV 599

Query: 593 EGISKKIACKIYNHFHK 609
           +GI   +A  IY   H+
Sbjct: 600 KGIGPMLAGTIYKALHE 616


>gi|116625695|ref|YP_827851.1| excinuclease ABC subunit C [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122939314|sp|Q01S04|UVRC_SOLUE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|116228857|gb|ABJ87566.1| Excinuclease ABC subunit C [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 623

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 192/611 (31%), Positives = 304/611 (49%), Gaps = 32/611 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
           Q+P  PGVY   D  G+V+YVGKA +L+ R++SY   +     +   +I++  +I + + 
Sbjct: 9   QLPFSPGVYLYKDSGGKVIYVGKAKSLRNRVRSYFSEDKLGDIKTGTLITEACDIDYILV 68

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             E EAL LE N+IK+ KPRFNILLRDDK++PY+ +T+  K P +Y  R        YFG
Sbjct: 69  DNEKEALALENNLIKQYKPRFNILLRDDKTYPYVKVTN-EKYPRVYVTRRLRKDGAQYFG 127

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYME 182
           PF   +   + ++ + R F + SC   + R   +PCL F I RC GPC     + E Y  
Sbjct: 128 PFFPANLAHRLVHFIHRHFQVPSCKVDLTRFHPKPCLQFHIHRCLGPCVQGLTTDEAYAA 187

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239
            V + + FL G + +L   +   M  A+L+  +E A   RD +  +  I+          
Sbjct: 188 AVRDVRLFLDGRHSDLARGLRARMEAASLEMRFEEAAGLRDLITTVEEIEERQKMAAAKG 247

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP- 298
           + +D F++Y    L  +       GQ       F +   E   +  LS  L+Q Y D+  
Sbjct: 248 DDVDIFAVYAEPPLVALNIFHLRNGQIVDRRELFWEDQFEYDESLFLSSLLKQIYLDQQF 307

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I +  E E+   LE    ++   +V+I  P++G+K+ ++     NA  S   +   
Sbjct: 308 VPAEIHVPVEFEDLEALEELLTEKRQRRVEIRTPQRGQKKALLGLVETNAKHSFDARFRV 367

Query: 359 EISHQMILKD-FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                  +++       LP  P RIE +D SHI G   V  MVV  +    K+ YRKF +
Sbjct: 368 LKPSSRAIQEALQDALNLPDAPSRIECFDISHIQGTDKVASMVVWEDGKMKKSDYRKFII 427

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V   DD A MR V+ RR+S+L + ++                P +V++DGG GQL 
Sbjct: 428 RT--VVGNDDFASMREVVTRRYSRLQEEKQ--------------PMPGLVLIDGGLGQLH 471

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA   L+ + + ++  + SIAK  +        F ++ E +VL+   PIL+ +Q +RDEA
Sbjct: 472 AAAEALEAIGIADQ-PLASIAKREEIIY----VFGQEDEPVVLDRFSPILHLVQSIRDEA 526

Query: 538 HRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA+T HR  R  +   S LD I G+G    + LL+ FG+++ +  ++   LA++ G  
Sbjct: 527 HRFAVTFHRSLRNTRQLTSELDAIRGVGAKTVQKLLKEFGSLERVRAATETQLATVVG-- 584

Query: 597 KKIACKIYNHF 607
           +  A ++  H+
Sbjct: 585 RAAAKRVIAHY 595


>gi|296112590|ref|YP_003626528.1| excinuclease ABC subunit C [Moraxella catarrhalis RH4]
 gi|295920284|gb|ADG60635.1| excinuclease ABC subunit C [Moraxella catarrhalis RH4]
 gi|326576836|gb|EGE26743.1| excinuclease ABC subunit C [Moraxella catarrhalis 101P30B1]
 gi|326577710|gb|EGE27586.1| excinuclease ABC subunit C [Moraxella catarrhalis O35E]
          Length = 616

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 207/614 (33%), Positives = 312/614 (50%), Gaps = 32/614 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG+Y+ML  +G +LYVGKA +L+ R+ SY        +   ++ +I  I   +T  
Sbjct: 25  LPNRPGIYKMLGKSGEILYVGKAKSLKNRVGSYFAKTIEHPKTQALVQRIEQIEIIITRG 84

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFGP 124
           E EALLLE N+IK  +P +N+LLRDDKS+ YI I+   K P L   R      QG +FGP
Sbjct: 85  ETEALLLEQNLIKNHRPPYNVLLRDDKSYLYIYIST-DKFPRLSIGRGKGRYTQGRFFGP 143

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S    ++++  +QR F +RSC +S F  R RPCL +QIKRC  PC G +S+E+Y   V
Sbjct: 144 YPSARNAKESVQLMQRLFMIRSCTNSFFAQRQRPCLEYQIKRCKAPCVGMVSAEQYQSDV 203

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242
             A  FL G +H ++  + + M +A    ++E A  +RDRLA +S +Q            
Sbjct: 204 RAALAFLQGHSHEVQAILVKKMEEAAAALNFEQAAFYRDRLAMISDLQAKQAVFRLQGEA 263

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTD--KP 298
           D F++  +     +       GQ  G   +F      +  +N + L  FL  FY      
Sbjct: 264 DVFAIAADAGAVAVCVLTVRGGQVLGVKNYFPDDIEPAIKSNQERLKEFLLSFYFQVSDD 323

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I+ S   EE S+L      Q+G +  I       +   +  A +NA+ + + KL  
Sbjct: 324 LPDEIISSVAIEEASILADILQVQFGKRTTIKHKVTTHRDDWLSIANLNANNALSAKLKD 383

Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
               Q   +   +           RIE +D SH MG +A+G  VV  +NG  K  YR++ 
Sbjct: 384 SRELQARFEQLKQVLAPITTCTIDRIECFDISHTMGEAAIGSCVVFDQNGPKKRDYRQYA 443

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +H   +   DD A MR VL RR+++                      PD++++DGGKGQL
Sbjct: 444 IHD--ITAGDDYAAMRQVLMRRYTK-------------------HPLPDLLLIDGGKGQL 482

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           + A  VL +L       ++ +AKG  R AG+E       E + L      L+ I ++RDE
Sbjct: 483 NVAIEVLSELGKLTDTLLVGVAKGEGRKAGLEVLHFVTHEPIDLPADSKALHLIMQIRDE 542

Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT HRK+R KK + S L+ I G+G +R+R LL  FG ++ +  +S + +A ++GI
Sbjct: 543 AHRFAITAHRKKRDKKRSSSVLEVIPGLGQVRRRDLLNHFGGIQQLLGASQDEIAQVKGI 602

Query: 596 SKKIACKIYNHFHK 609
              +A  IY   H+
Sbjct: 603 GPMLAGTIYKALHE 616


>gi|258446078|ref|ZP_05694240.1| excinuclease ABC subunit C [Staphylococcus aureus A6300]
 gi|257855136|gb|EEV78077.1| excinuclease ABC subunit C [Staphylococcus aureus A6300]
          Length = 593

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYCVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+ +++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGANAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|148242296|ref|YP_001227453.1| excinuclease ABC subunit C [Synechococcus sp. RCC307]
 gi|147850606|emb|CAK28100.1| Nuclease subunit of the excinuclease complex (Excinuclease ABC
           subunit C) [Synechococcus sp. RCC307]
          Length = 650

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 191/628 (30%), Positives = 301/628 (47%), Gaps = 29/628 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
            +P  PG Y M D   R+LY+GK+  L+ R++SY    N  + RI  M+ Q+ +I F VT
Sbjct: 23  NLPVEPGCYLMRDRDDRILYIGKSKKLRSRVRSYFRGGNPISPRIRLMVRQVVDIEFIVT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--GSY 121
            +E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R          +
Sbjct: 83  DSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSEDYPRIFITRRRRFRSPLDRF 142

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+  V  + +T++ ++R F LR     + + RT  CL + I RC G C  +IS   Y 
Sbjct: 143 YGPYVDVGLLRRTLSVVKRVFPLRQRPQPLHKDRT--CLNYDIGRCPGVCQEKISPADYQ 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + +      G N  L+  + + M + + + D+E+A   RD+L  L  +          
Sbjct: 201 QILRKVSMVFQGRNEELQNLLQQQMVRYSERLDFEAAARVRDQLQGLELLTADQKVALPD 260

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +L  +  +A +Q      G+  G   F    ++      IL   L + Y+  
Sbjct: 261 ASVSRDVIALAADDRVAAVQLFQVRAGKLVGRLGFTADAEAAE-PGAILQRVLEEHYSQL 319

Query: 298 PC---PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  +LL     E  LLE     + G KV + VP++ +K  +IE    NA     +
Sbjct: 320 DPVELPAEVLLQHPLPEQELLEAWLRDRRGRKVILQVPQRQQKADLIEMVERNAGFELAR 379

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   Q+  +D  +   L H P+RIE YD SHI G  AV   VV  +    K  YRK
Sbjct: 380 AQRGAEQQQLSTEDLAQLLELEHPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHYRK 439

Query: 415 FNLHPNDVKTQD--DCAMMRMVLERRFSQLIKN--------EENLNFHPKKQEYSFPSWP 464
           + +  + +++    D   M  ++ RRF +  +         E         Q   F  WP
Sbjct: 440 YKIRSSSIRSGHSDDFMAMAEIMRRRFRRWSQAKATGANLSELRQRRGSALQTDGFTDWP 499

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           DVV++DGGKGQLSA    L++L++ + + + S+AK  +     E F     + L      
Sbjct: 500 DVVMIDGGKGQLSAVMEALRELDLADELVVCSLAKQRE-----EVFRPGASQPLESEADQ 554

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             +  ++RLRDEAHRFA++ HR++R  +   S L +I G+GP R + LL  F ++  I  
Sbjct: 555 LGVQLLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGPKRVKDLLAHFRSIDAIQL 614

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNT 611
           +S ET+A   G+   +A +I+  FH   
Sbjct: 615 ASAETIAECPGVGPALALQIHQFFHPQA 642


>gi|269977212|ref|ZP_06184185.1| excinuclease ABC subunit C [Mobiluncus mulieris 28-1]
 gi|269934515|gb|EEZ91076.1| excinuclease ABC subunit C [Mobiluncus mulieris 28-1]
          Length = 702

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 190/696 (27%), Positives = 309/696 (44%), Gaps = 94/696 (13%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
              ++P  PGVY+  D  GRV+YVGKA NL+ R+ SY         R   M++   ++ +
Sbjct: 8   KPAEIPTAPGVYRWRDAHGRVIYVGKAKNLRNRLTSYFVDPAKLHPRTAKMVATAESVSW 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +EVEAL LE   IK   P+FN++ +DDKS+PY  +T   + P +   R +      
Sbjct: 68  VVVGSEVEALTLEYTWIKEYDPKFNVMFKDDKSYPYFAVTLNQEFPRMGVLRSAHQRGVR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP---CLLFQIKRCSGPCTGEISS 177
           YFGP+ +V A+ +T + L+  F +R+C D VF         CL   I RCS PC G IS+
Sbjct: 128 YFGPYTAVWAIRQTSDLLETVFPVRTCTDGVFARARAAGRACLKGYIGRCSAPCIGRISA 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            ++ E  +    F+SG    L   +   M   +    +E A   RD+L AL  +   N  
Sbjct: 188 AEHRELANRVCDFMSGHEAGLLRDLENQMWAESKAFRFEEAAKKRDQLEALRKVLEKNAV 247

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +     D F+L  ++    +Q  +   G+ RG   +    + +   ++++S+ L Q Y
Sbjct: 248 VMDTDTDADLFALAADELQVSVQVFYVRAGRIRGQRGWISTIEEDVDTSELMSFALEQIY 307

Query: 295 TDKP---------------------------CPENILLSEEAEETSLLEISFFKQYGYKV 327
                                           P+ IL+S    + + LE       G KV
Sbjct: 308 GQVAAKLAQSGGAQLREPSSATDVAHFDTTYIPKQILVSVIPADPASLEAWLSGLRGSKV 367

Query: 328 KITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIE 383
            I  P++G KR+ +E+  +NA        T++ S      + L +  +   +     R+E
Sbjct: 368 TIRRPQRGMKREAVERVELNAVDGLRLYKTRRASDLTQRNLALNELGRALGIDPPL-RVE 426

Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC-AMMRMVLERRFSQL 442
            YD SH  G   VG MVV  +    KN YRKF +  +  +   D    M  VL RRF +L
Sbjct: 427 CYDISHTQGTFQVGSMVVFEDGAPRKNAYRKFTVRGSQGQGAADDTEAMNEVLRRRFERL 486

Query: 443 IKNEENLNFHPK-----------------------------------------------K 455
           I+ E       +                                               +
Sbjct: 487 IQEETPAPHEVEPAVTDRGDPAARYVGESSVAGDVGDAASRGANPNPGEGLSGDPSGEIR 546

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
           +   F   PD+V++DG   Q+ AA+  +  + V + I ++ +AK  +     E + V   
Sbjct: 547 EPKRFSYRPDLVVVDGALPQVHAARAAMDAVGVWD-IPVVGLAKRLE-----EVWTVDSD 600

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574
             ++       LY +Q LRDE+HRFAIT HRK+R +    S LD I G+G ++++ LL+ 
Sbjct: 601 FPVIFPRTSTALYLLQYLRDESHRFAITAHRKKRGQAMTRSVLDGIPGLGSVKQKALLKH 660

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           FG+++ I R+S E ++ + G  + +A ++  +  +N
Sbjct: 661 FGSLRQIRRASAEDISKVPGFGRILATQVVKYLQEN 696


>gi|217967867|ref|YP_002353373.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336966|gb|ACK42759.1| excinuclease ABC, C subunit [Dictyoglomus turgidum DSM 6724]
          Length = 598

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/615 (30%), Positives = 315/615 (51%), Gaps = 33/615 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E  PE  GVY   D +G+V+YVGKA NL+KR+ SY   +  + +  +++ +  NI F 
Sbjct: 12  KVENFPESTGVYIFYDHSGKVIYVGKAKNLRKRVLSYFSDS--SPKSAYILKKAQNIEFY 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T TE EAL+LE+ +IK+ +P  NI LRDDK +P + +T   + P L   R        Y
Sbjct: 70  ITDTETEALILESVLIKKHRPIMNIQLRDDKQYPLLKLTLYEEYPRLILARRFEDDGAKY 129

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKY 180
           +GP+     V +TI+ +++ F LRSC  ++ + +  RPCL + I+ C  PC G I+ E Y
Sbjct: 130 YGPYTQSGTVRETISMVKKLFNLRSCNWNLPKSKPKRPCLNYFIENCKAPCQGYITKEDY 189

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E V E   F+ G    +  K+   M + +   ++E A   RD++  L ++      +  
Sbjct: 190 QEIVREVIDFMEGRYEEIINKLYNEMQKYSKNLEFEKAAKVRDKIRLLQNLSEKQKILTF 249

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D    Y   + A +       G+      F L    E +  ++L  F+ Q+Y+ +
Sbjct: 250 NRENKDLIQFYVEDHKAKVLVYLIREGKLVEKRIFNLTLPEEYSRDELLESFILQYYSVR 309

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             PE I+L        +    F  +           + E     E+ L  A +  T +  
Sbjct: 310 DIPEIIVLPFLVFGGEVDLKEFLCRRKGTKVEIRTPESEDE---EKLLNMALKDLTIESL 366

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                 + L +  + F LP++P  IE YD S++ G  AVG  V        KN+YR++ +
Sbjct: 367 RSEKVWLALSELQRIFNLPNLPVAIEGYDISNLQGREAVGARVYFQNGYPDKNRYRRYKI 426

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
              + ++ +D  M++ V++RR +++ ++                  PD++++DGGKGQL+
Sbjct: 427 KYTE-ESPNDYLMLQEVIKRRLNKIEED----------------PLPDIMLIDGGKGQLN 469

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A   V ++L ++ +  I+++AK  +     E F     ++++L    P L+ +Q++RDEA
Sbjct: 470 AVLEVFEELKIKPKF-ILALAKERE-----EIFVPGNSDSILLPYDSPALHLLQQVRDEA 523

Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA++ HRK R KK   S L++I GIG  R ++LL++F  ++ + ++S E L  I GIS
Sbjct: 524 HRFAVSYHRKLRSKKLIDSHLEKIPGIGEKRMKILLEAFNDLESLKKASLEDLKKIPGIS 583

Query: 597 KKIACKIYNHFHKNT 611
           +KIA KIY +FHK++
Sbjct: 584 EKIAEKIYLYFHKSS 598


>gi|78186373|ref|YP_374416.1| excinuclease ABC subunit C [Chlorobium luteolum DSM 273]
 gi|119367681|sp|Q3B5K8|UVRC_PELLD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78166275|gb|ABB23373.1| Excinuclease ABC subunit C [Chlorobium luteolum DSM 273]
          Length = 628

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 181/639 (28%), Positives = 298/639 (46%), Gaps = 62/639 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
            +P  PG+YQ  + AG+V+YVGKA N++ R++SY       T +   ++  I ++   +T
Sbjct: 18  SLPTGPGIYQFKNSAGKVIYVGKAKNIRSRVRSYFRDPRQLTGKTQVLVGHITDLEIIIT 77

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL+LE N+IK LKPR+N+ L+DDK++P+++IT     P ++  R+ +  + ++FG
Sbjct: 78  SSEVEALILENNLIKELKPRYNVNLKDDKTYPWLVIT-GEPFPRVFISRNRTRDKSTWFG 136

Query: 124 PFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+     +   +  +   F +RSC      +++   + + CL + I +C GPC G  +  
Sbjct: 137 PYTEAGQLRSILELIGSIFPVRSCRYSLTPENIAAKKHKLCLDYHIGKCKGPCEGLQNEA 196

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y+E + E  + L G    L +++   M  A  +  +E A   + +L +L    +    +
Sbjct: 197 EYLEMIGEIVRLLKGRTAGLLKELHEKMLTAAAELRFEEAAELKMQLQSLRRYADRQKMV 256

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++    + AC        G+  G   F L   +     ++L   L  +Y 
Sbjct: 257 AADGMDRDVSAIASGDDEACGVVFRIREGKMLGARHFILTNTAGEPEKKLLGKVLEGYYL 316

Query: 296 DKP--CPENILLSEEAEETSLLE--------ISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
             P   PE +LLS + +                        VK TVP+ GEK  ++E   
Sbjct: 317 KSPEAMPEEVLLSAQLDLEDTESLQALSREREEECPTRRKAVKFTVPQIGEKAHLVEMCR 376

Query: 346 INAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
            NA     + L  +       ++        +   L   PKRIE +DNSH+ G   V  M
Sbjct: 377 QNARHHLAEYLVQKQKRGEAAREHYGVKALGESLHLETPPKRIECFDNSHLQGTDYVSSM 436

Query: 400 VVVGENGFVKNQYRKFNLHP----NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455
           V       +K+ YRKF L          + DD A M  VL RR+   +++E         
Sbjct: 437 VCFVNGKPLKSAYRKFRLQSLEEACGTGSSDDYAAMEQVLGRRYGGSLQDE--------- 487

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
                   PD++++DGGKGQ ++A+ VL +L +   + +I +AK  +     E F     
Sbjct: 488 -----LPLPDLIVVDGGKGQANSAKKVLDRLGIT--VPVIGLAKRLE-----EVFTPDAD 535

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQS 574
               L    P L  +Q+LRDEAHRFAIT HR  R K+   + L  I G+G      LL+ 
Sbjct: 536 GPFNLPKTSPALKLLQQLRDEAHRFAITYHRNIRSKRTLETGLTTIPGVGEKIAFALLER 595

Query: 575 FGTVKMISRSSPETLA----SIEGISKKIACKIYNHFHK 609
           FG+V  ++ +S E L+     ++G+S      I+ H+H 
Sbjct: 596 FGSVDGVAAASAEELSQFAGKVKGMS------IFRHYHP 628


>gi|163815353|ref|ZP_02206728.1| hypothetical protein COPEUT_01517 [Coprococcus eutactus ATCC 27759]
 gi|158449327|gb|EDP26322.1| hypothetical protein COPEUT_01517 [Coprococcus eutactus ATCC 27759]
          Length = 638

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 186/624 (29%), Positives = 310/624 (49%), Gaps = 37/624 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L  R+  Y  +    + +I  M+S I    +
Sbjct: 30  ELKKLPHVPGVYLMHDSGDHIIYVGKAIDLYNRVHQYFQAGYKKSPKIQKMVSHIAWFEY 89

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +E+EAL+LE N+IK  +P +N +L DDK +PYI IT +   P +            
Sbjct: 90  IVCGSELEALVLECNLIKEHRPHYNTMLTDDKGYPYIRITVEEDFPRILYSHQMKRDHSK 149

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV+  I  L++ + +RSC+ ++ +     RPCL  QIK+C  PC G IS E
Sbjct: 150 YFGPYTNSRAVKDIIELLKKLYHIRSCSRNLPKDIGLERPCLYHQIKQCDAPCQGYISKE 209

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
            Y   + +A  FL+G + ++ + + + M +   + ++E A   RD + ++ HI+      
Sbjct: 210 DYNNNIQQAISFLNGNHGHVVKDLEKRMRELADEMEFEQASEIRDLIKSIQHIETTQRVG 269

Query: 236 DSIYNRMDCFSLYHN-KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           D+  +  D  ++  +  N   I   F   G+  G   + +   +    + I+  FL+Q+Y
Sbjct: 270 DTSSDDRDVIAMATDLGNECVISIFFVRSGKMIGREHYHMSGVNAEKYSTIMESFLKQYY 329

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
              P  P+ I++ ++ ++ +L+E     + G +V I +P++G+K+K+++ A  NA     
Sbjct: 330 ASTPYLPKEIIIEQQIDDYALIEEYLSARCGSQVHIVIPQKGDKQKLLKLAKDNAFLVMN 389

Query: 354 QK----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           Q        +   +   K+  +   +P    R+E +D SHI G  +V  MVV       K
Sbjct: 390 QDADKLKREKERTEGAAKELAQLIGVPSAK-RLEAFDISHISGYHSVASMVVFENGRAKK 448

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           N YRKF L    +   DD A MR VL RRF+                +  F  +PD++++
Sbjct: 449 NDYRKFKLRT--IDGPDDYASMREVLTRRFT----------------DEKFNIYPDILMM 490

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++ A  VL  L +   I +  + K                + +           
Sbjct: 491 DGGRGQVNIALEVLGDLGL--NIPVCGMVKDDHHRTRG---LYYNNKEIEFPAGTQAFNM 545

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I RL+DEAHRFAI  HR  R KA  +S LD+I+GIGP R++ LL  F  +  I +++   
Sbjct: 546 ITRLQDEAHRFAIEYHRSLRSKAQIHSVLDDIDGIGPARRKALLAYFKDIDNIKKAAIAD 605

Query: 589 LASIEGISKKIACKIYNHFHKNTS 612
           L    G+++  A  +YN FH +++
Sbjct: 606 LEIPAGMTRASAEAVYNFFHADST 629


>gi|325299505|ref|YP_004259422.1| UvrABC system protein C [Bacteroides salanitronis DSM 18170]
 gi|324319058|gb|ADY36949.1| UvrABC system protein C [Bacteroides salanitronis DSM 18170]
          Length = 602

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 176/619 (28%), Positives = 315/619 (50%), Gaps = 48/619 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PG+YQ L+  G ++YVGKA NL++R+ SY   ++H+ +   ++S+I +IR+ V  
Sbjct: 16  NLPTSPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKDHHSAKTRILVSRIADIRYIVVN 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDKS+P I +++    P ++K R       +YFGP
Sbjct: 76  TEEDALLLENNLIKKYKPRYNVLLKDDKSYPSICVSN-EYFPRVFKTRKIVRDGSTYFGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           +    +++  ++ +++ + LR+C      +++   + R CL + IK C GPC G  S E+
Sbjct: 135 YTHFPSMQAMLDLIKKLYPLRTCHLALTPENIQAGKFRVCLEYHIKNCKGPCIGAQSHEE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           YM  +   K+ L G    + + + + M +   +  +E A + +++   + + ++ ++   
Sbjct: 195 YMANIASIKELLKGNTQKVSQGMMQEMMRLADEMRFEEAQLIKEKYELIENYRSKSEVVS 254

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            + + +D FS+  ++  A I       G      TF  K   E T  ++L   + +    
Sbjct: 255 SVLHNIDVFSIEDDEQSAYINYLHITNGCINQAFTFEYKKRLEETKEELLEMGIVEMRER 314

Query: 297 KPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                + I++  E +                V  T+P++G+K+ ++E +++N  +    +
Sbjct: 315 YKSQSKEIIVPFELDLEME-----------DVTFTIPQRGDKKHLLELSILNVKQYKVDR 363

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     +LK+  ++  +  IP  IE +DNS+I G  AV   VV  +    K
Sbjct: 364 LKQAEKLNPEQRSVRLLKEIQEQLHMEKIPLHIECFDNSNIQGADAVAACVVFKKGRPSK 423

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+ +    V   DD A M+ V+ RR++++++ +  L              PD+++ 
Sbjct: 424 QDYRKYIIKT--VVGPDDYASMQEVVRRRYTRILEEQGEL--------------PDLILT 467

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK  K     E  F      + L    P+ + 
Sbjct: 468 DGGKGQMEVVRQVIED-ELSLHIPIAGLAKDNKHRTS-EILFGFPPRNIGLKQGTPLFHL 525

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           ++ +++E HRFAIT HR +R K+   S LD I G+G +RK  LL+ F +V  I ++S E 
Sbjct: 526 LENIQNEVHRFAITFHRDKRSKSQIASALDGIKGVGKMRKEALLKHFKSVARIKKASLEE 585

Query: 589 LASIEGISKKIACKIYNHF 607
           LA + G+S  +A  I    
Sbjct: 586 LAEVVGMS--VAQTIKETL 602


>gi|167764034|ref|ZP_02436161.1| hypothetical protein BACSTE_02417 [Bacteroides stercoris ATCC
           43183]
 gi|167698150|gb|EDS14729.1| hypothetical protein BACSTE_02417 [Bacteroides stercoris ATCC
           43183]
          Length = 606

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 177/620 (28%), Positives = 312/620 (50%), Gaps = 49/620 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 16  NLPESPGIYQYLNAEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 76  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G+ + E+
Sbjct: 135 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQNQEE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    ++  + + M +   +  +E A   +++   L + ++ ++ + 
Sbjct: 195 YLKNIAEIKEILKGNTQEIERMLYQQMQELAAEMKFEEAQKIKEKYLLLENYRSKSEVVS 254

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++  +       A I       G      TF  K     T  ++LS  + +  
Sbjct: 255 NVLHNIDVFSIEEDTDEKSAFINYLHITNGAINQAFTFEYKKRLNETKEELLSLGIIEMR 314

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  L            V  T+P++G+K+K++E +++N  +    
Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVIFTIPQRGDKKKLLELSILNVKQYKAD 364

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     +LK+  ++  L  +P RIE +DNS+I G   V   VV  +    
Sbjct: 365 RLKQAEKLNPEQRTVRLLKEIQQELHLDRLPMRIECFDNSNIQGSDPVAGCVVFIKGKPS 424

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V+  DD   M+ V++RR+ + I+                   PD++I
Sbjct: 425 KKDYRKYNIKT--VEGPDDYTSMKEVVKRRYQRAIEEN--------------APLPDLLI 468

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+SA + V+ +LN++  I I  +AK  K     E  +    + + L    P+  
Sbjct: 469 TDGGKGQMSAVKEVVDELNLD--IPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNSPLFR 525

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAIT HR +R K    S LDEI GIG   K  LL+ F +VK I  +S E
Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQIASALDEIKGIGEKTKNALLKEFKSVKRIKEASAE 585

Query: 588 TLASIEGISKKIACKIYNHF 607
            +  +  I +  A  I ++F
Sbjct: 586 DIVKV--IGEAKAKIIKDYF 603


>gi|302023667|ref|ZP_07248878.1| excinuclease ABC subunit C [Streptococcus suis 05HAS68]
          Length = 582

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 172/605 (28%), Positives = 297/605 (49%), Gaps = 42/605 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   +  G+++YVGKA NL+ R++SY    + T +   ++++I +  F 
Sbjct: 8   KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+  KPR+NI+L+DDKS+P+I IT K + P L   R      G Y
Sbjct: 67  VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLIITRQIKKDGGQY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +T+  L+R +  R C     ++    CL + +++C        S   Y 
Sbjct: 126 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLRQCLAHGDNMPSLSDYD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + V E  +FL+G +  + +++   M  A    ++E A  +RD L ++S ++     + + 
Sbjct: 182 KMVKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 241

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ ++ ++  +   K          P++GEK+++I  A  NA     +    
Sbjct: 302 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 355 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +    N V+  DD A MR VL+RR+S++++++               + PD++I+DGG+G
Sbjct: 414 Y--KINTVEGPDDYASMREVLQRRYSRVLRDD--------------LTPPDLIIIDGGQG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 458 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS-- 591
           DE HRFAI  HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +A   
Sbjct: 516 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSIGNIQSASLQEIAEAG 575

Query: 592 IEGIS 596
           +  I 
Sbjct: 576 VPYIG 580


>gi|171463200|ref|YP_001797313.1| excinuclease ABC, C subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192738|gb|ACB43699.1| excinuclease ABC, C subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 618

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 208/634 (32%), Positives = 320/634 (50%), Gaps = 52/634 (8%)

Query: 10  PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69
           PGVY+  D AG +LY GKA NL+KR+ SY      + RI  M+ +I +   TVT TE EA
Sbjct: 2   PGVYRFFDEAGHILYAGKARNLKKRVSSYFQRTQLSPRIELMVGKIAHYETTVTRTETEA 61

Query: 70  LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVD 129
           L+LE N+IK L P FNIL RDDKS+PY+++T  H+ P L  +R     +  YFGPF +  
Sbjct: 62  LILENNLIKELAPPFNILFRDDKSYPYVMLT-GHQFPRLASYRGKVDKRNHYFGPFPNSW 120

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
           AV  ++  LQ+ F LR+C DSVF++R+RPCLL QI RCS PC G ++ E+Y + V +A +
Sbjct: 121 AVRNSVQILQKVFRLRTCEDSVFKNRSRPCLLHQIHRCSAPCVGRLNVEQYGQDVAQATR 180

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-----NRMDC 244
           FL G +  +  ++ + M++ +   ++E A + RDR+A LS +               +D 
Sbjct: 181 FLEGDHSQVLSELEKEMHKHSEAIEFEMAAVLRDRIADLSSVLQQQSMDVVAKGEGDVDI 240

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST-----NAQILSYFLRQFYTDKP- 298
            ++   + + C+       G++ G   +F K    ++       +IL  F+ Q Y ++  
Sbjct: 241 IAVAQMEGMVCVNLAMVRGGRHLGDRAYFPKGLRTTSGELPFPPEILEAFITQHYLEENS 300

Query: 299 -------CPENILLSEEA------------EETSLLEISFFKQYGYKVKITVPKQGEKRK 339
                   P  ++L+                    L      Q G K+      QG+KR 
Sbjct: 301 NETTSNLIPPVLVLNHALQSARDDLAQLNESPPEDLHELLNAQAGRKITFLHQPQGQKRH 360

Query: 340 IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALP---HIPKRIEIYDNSHIMGCSAV 396
            +  A  NA  + T++L          +      +L        RIE +D SH  G +  
Sbjct: 361 WLAMAEGNAKIALTKRLVETGGQLARARTLADILSLELESLEQLRIECFDISHTSGEATQ 420

Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456
              VV  ++    ++YR+FN++   +   DD A MR VL R ++   +            
Sbjct: 421 ASCVVYAKDAMQSSEYRRFNIND--ITPGDDYAAMRQVLHRCYANFQE------------ 466

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG- 515
                  P V+++DGG+GQ+  A+ VL +  ++  + I+ +AK   R  G+E      G 
Sbjct: 467 -LPLEKIPQVILIDGGQGQVEMARQVLSEFGMDIGL-IVGVAKSEGRKVGLETLIFADGR 524

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQS 574
           E + L +    L  I ++RDEAHRFAIT  R +R KA   S L+EI GIG  R++ LL  
Sbjct: 525 EPMELGIDSAALLLIAQIRDEAHRFAITGMRAKRAKARTISRLEEIEGIGAKRRQKLLAR 584

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           FG +K ++ +S E LAS+EG+S  +A +IY   H
Sbjct: 585 FGGLKGVANASIEELASVEGVSLTLAEQIYRQLH 618


>gi|258449809|ref|ZP_05697907.1| excinuclease ABC subunit C [Staphylococcus aureus A6224]
 gi|257856729|gb|EEV79632.1| excinuclease ABC subunit C [Staphylococcus aureus A6224]
          Length = 593

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 283/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYCVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+ +++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  +       P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEEL-ETQMGIQTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|206889707|ref|YP_002249679.1| excinuclease ABC, C subunit [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741645|gb|ACI20702.1| excinuclease ABC, C subunit [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 589

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/615 (30%), Positives = 311/615 (50%), Gaps = 35/615 (5%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +P  PGVY   D  G+VLYVGKA NL+ R+KSY  S++   R + M+  I +  +
Sbjct: 2   IDLNTVPSLPGVYLFKDSKGKVLYVGKAKNLRNRLKSYFQSDDLDPRKSKMVKLIKDFSY 61

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  E EAL+LEAN+IK+ KP FN+LLRDDKS+PY+ IT   + P +   R        
Sbjct: 62  IVTSNEFEALVLEANLIKQHKPSFNVLLRDDKSYPYLRITVVEEWPKIDVVRKPKKDGNL 121

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+    ++ + ++ ++R F +R+C         RPC+ +Q+KRC  PC G IS E Y
Sbjct: 122 YFGPYVPAQSMWEALSFIRRNFPIRTCKYR-LNKPIRPCVQYQMKRCPAPCAGFISREDY 180

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
           M+ V+E   FL G    L   +   M + + +  +E+A   RD++  L  I         
Sbjct: 181 MKGVNEVVLFLKGQKTELLNILYEKMQKLSHELKFEAAAKIRDQIRRLEKIFTQQRVVSQ 240

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
             + MD   +Y   +   + T F   G   G+  + +K     +  +++   +   Y+ +
Sbjct: 241 TLDDMDVIGVYIENSKISVNTLFVRNGLLVGSNDWTVKKAFYESEGELIHAVIEALYSKE 300

Query: 298 P--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P  I+L    E  + ++    ++ G  V++  P   E++ +++ AL NA      K
Sbjct: 301 ALIPPPIIVLENLPESLTEIKEWLKEKRGDFVELKTPSLEEEKALLDMALNNAKIHLQSK 360

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           +S   +    LK+  ++  L  IP +I  +D S + G  +VG  V   +  F KN YR  
Sbjct: 361 ISPLETS---LKELKQRLNLSEIPSKIGAFDVSTLFGSYSVGSFVYWQDGFFDKNLYRHL 417

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    ++  DD + M+ ++ R   +                      PD++++DGG G 
Sbjct: 418 RIKE--IQGIDDYSAMKEIVHRVVKKFNAE---------------LPEPDLILIDGGLGH 460

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           L+AA  V+ +L  + ++ + +IAK P R           G  LVL  + P    ++++R+
Sbjct: 461 LNAAIKVINEL--KEKLNVFAIAKDPDR------LIFPDGRELVLEDKKPSSLLLKKIRN 512

Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI+ H+K RKKA + S L++I GIG  R+  LL+ FG++  I  ++ E +AS++G
Sbjct: 513 EAHRFAISYHKKLRKKATFESLLEKIQGIGKKRRLTLLKHFGSISKIKAATVEEIASLQG 572

Query: 595 ISKKIACKIYNHFHK 609
            + ++A K+    +K
Sbjct: 573 FNLRLAGKVIEELNK 587


>gi|326560852|gb|EGE11217.1| excinuclease ABC subunit C [Moraxella catarrhalis 7169]
 gi|326570782|gb|EGE20807.1| excinuclease ABC subunit C [Moraxella catarrhalis BC1]
          Length = 616

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 207/614 (33%), Positives = 312/614 (50%), Gaps = 32/614 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG+Y+ML  +G +LYVGKA +L+ R+ SY        +   ++ +I  I   +T  
Sbjct: 25  LPNRPGIYKMLGKSGEILYVGKAKSLKNRVGSYFAKTIEHPKTQALVQRIEQIEIIITRG 84

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFGP 124
           E EALLLE N+IK  +P +N+LLRDDKS+ YI I+   K P L   R      QG +FGP
Sbjct: 85  ETEALLLEQNLIKNHRPPYNVLLRDDKSYLYIYIST-DKFPRLSIGRGKGRYTQGRFFGP 143

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S    ++++  +QR F +RSC +S F  R RPCL +QIKRC  PC G +S+E+Y   V
Sbjct: 144 YPSARNAKESVQLMQRLFMIRSCTNSFFAQRQRPCLEYQIKRCKAPCVGMVSAEQYQSDV 203

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242
             A  FL G +H ++  + + M +A    ++E A  +RDRLA +S +Q            
Sbjct: 204 RAALAFLQGHSHEVQAILVKKMEEAAAALNFEQAAFYRDRLAMISDLQAKQAVFRLQGEA 263

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTD--KP 298
           D F++  +     +       GQ  G   +F      +  +N + L  FL  FY      
Sbjct: 264 DVFAIAADAGAVAVCVLTVRGGQVLGVKNYFPDDIEPAIKSNQERLKEFLLSFYFQVSDD 323

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I+ S   EE S+L      Q+G +  I       +   +  A +NA+ + + KL  
Sbjct: 324 LPDEIISSVAIEEASILADILQVQFGKRTTIKHKVTTHRDDWLSIANLNANNALSAKLKD 383

Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
               Q   +   +           RIE +D SH MG +A+G  VV  +NG  K  YR++ 
Sbjct: 384 SRELQARFEQLKQVLAPITTCTIDRIECFDISHTMGEAAIGSCVVFDQNGPKKRDYRQYA 443

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +H   +   DD A MR VL RR+++                      PD++++DGGKGQL
Sbjct: 444 IHD--ITAGDDYAAMRQVLMRRYTK-------------------HPLPDLLLIDGGKGQL 482

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           + A  VL +L       ++ +AKG  R AG+E       E + L      L+ I ++RDE
Sbjct: 483 NVAIEVLSELGKLTDTLLVGVAKGEGRKAGLEVLHFVAHEPIDLPADSKALHLIMQIRDE 542

Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT HRK+R KK + S L+ I G+G +R+R LL  FG ++ +  +S + +A ++GI
Sbjct: 543 AHRFAITAHRKKRDKKRSSSVLEVIPGLGQVRRRDLLNHFGGIQQLLGASQDEIAQVKGI 602

Query: 596 SKKIACKIYNHFHK 609
              +A  IY   H+
Sbjct: 603 GPMLAGTIYKALHE 616


>gi|82750753|ref|YP_416494.1| excinuclease ABC subunit C [Staphylococcus aureus RF122]
 gi|119367844|sp|Q2YXC9|UVRC_STAAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|82656284|emb|CAI80698.1| excinuclease ABC subunit C [Staphylococcus aureus RF122]
 gi|323440697|gb|EGA98407.1| excinuclease ABC subunit C [Staphylococcus aureus O11]
 gi|323442360|gb|EGA99989.1| excinuclease ABC subunit C [Staphylococcus aureus O46]
          Length = 593

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+ +++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|291166051|gb|EFE28097.1| excinuclease ABC subunit C [Filifactor alocis ATCC 35896]
          Length = 618

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 179/621 (28%), Positives = 312/621 (50%), Gaps = 39/621 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVT 63
            +P  PGVY M + A +V+YVGKA +L+ R+  Y   + HT  +++ M+S ++   + VT
Sbjct: 11  TLPSSPGVYLMKNDADKVIYVGKAVSLKNRVSQYFRKSGHTDLKVSAMVSNVSYFDYIVT 70

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EAL+LE N+IK   P +NILLRDDK++PY+ +T + + P + K R  +     YFG
Sbjct: 71  DSEMEALILENNLIKEYNPPYNILLRDDKTYPYVKVTVQEEFPRVIKTRKVTKDGSKYFG 130

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+ +V A+ + +++LQ  + +R+C   + +      RPCL + I RC GPCTG+   ++Y
Sbjct: 131 PYTNVFALNEILDTLQELYPIRTCRREIRKSIERGERPCLNYYIHRCIGPCTGKADKKEY 190

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---- 236
              + E   FL G + ++   +   M QA+++  +E A   RD+L  +S +         
Sbjct: 191 NAMIEEILLFLQGKSDDIVSILTDKMKQASVEMRFEDAAKFRDKLQGISSLFESQKLVSA 250

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  S ++      IQ  +   G+  G+  F+ K   +S    + S+  + +   
Sbjct: 251 DNDKHQDYISYHNEDGNVMIQIFYIRDGKMLGSDHFYFKKTEQSREEVVSSFIKQFYLNT 310

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              PE I + E  ++  LL      + G K +  +P +GEKRK++     NA +++ ++ 
Sbjct: 311 NFIPEQIFVEESFDDMELLAKHLSGKKGKKTEFIIPIRGEKRKLLNLVRKNAEQNYIKEN 370

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
           +     +     +L++      L   P RIE +D S+I G  +VG  VV  +      +Y
Sbjct: 371 NIVDLQKRKKHQVLEELQDIMKLNTFPHRIEAFDISNISGVDSVGGQVVFIDGKKAPKEY 430

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RK+ +    V+  DD + ++ V+ERR                      P+ PD+ ++DGG
Sbjct: 431 RKYRIKS--VEGPDDYSSLKEVIERRVQH-------------------PNLPDLFLMDGG 469

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQ+S  + +L+ + ++  I +  + K  K             E   ++ +  +   I  
Sbjct: 470 KGQVSVIRNLLEDIGLD--IPVFGLYKDDKHRTKG---ICSDEELFEIDKKSDVYKLIYA 524

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +++E HRFAI  HR  R+K    S LD+I G+G  +K +LL+ F +VK I   + E L++
Sbjct: 525 IQEEVHRFAIEYHRSLREKHLSRSELDDIPGVGSKKKMILLKEFKSVKNIKEKTEEELSA 584

Query: 592 IEGISKKIACKIYNHFHKNTS 612
           ++GI ++ A  I  +F K   
Sbjct: 585 VKGIDRRTAKNIVEYFDKKNP 605


>gi|15924136|ref|NP_371670.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926730|ref|NP_374263.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267638|ref|YP_001246581.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393693|ref|YP_001316368.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156979468|ref|YP_001441727.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317071|ref|ZP_04840284.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253733617|ref|ZP_04867782.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005932|ref|ZP_05144533.2| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795124|ref|ZP_05644103.1| excinuclease ABC, C subunit [Staphylococcus aureus A9781]
 gi|258407168|ref|ZP_05680317.1| excinuclease ABC subunit C [Staphylococcus aureus A9763]
 gi|258421741|ref|ZP_05684662.1| excinuclease ABC, C subunit [Staphylococcus aureus A9719]
 gi|258432915|ref|ZP_05688604.1| excinuclease ABC subunit C [Staphylococcus aureus A9299]
 gi|258443405|ref|ZP_05691748.1| excinuclease ABC subunit C [Staphylococcus aureus A8115]
 gi|258454908|ref|ZP_05702871.1| excinuclease ABC subunit C [Staphylococcus aureus A5937]
 gi|269202759|ref|YP_003282028.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894173|ref|ZP_06302404.1| excinuclease ABC, C subunit [Staphylococcus aureus A8117]
 gi|282928668|ref|ZP_06336265.1| excinuclease ABC, C subunit [Staphylococcus aureus A10102]
 gi|295405951|ref|ZP_06815760.1| excinuclease ABC [Staphylococcus aureus A8819]
 gi|296275633|ref|ZP_06858140.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297246511|ref|ZP_06930349.1| excinuclease ABC [Staphylococcus aureus A8796]
 gi|54039845|sp|P67429|UVRC_STAAN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|54042753|sp|P67428|UVRC_STAAM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038098|sp|A7X172|UVRC_STAA1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038119|sp|A6U0W3|UVRC_STAA2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038120|sp|A5IS32|UVRC_STAA9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|13700946|dbj|BAB42242.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246916|dbj|BAB57308.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740707|gb|ABQ49005.1| Excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946145|gb|ABR52081.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156721603|dbj|BAF78020.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253728416|gb|EES97145.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257789096|gb|EEV27436.1| excinuclease ABC, C subunit [Staphylococcus aureus A9781]
 gi|257841323|gb|EEV65768.1| excinuclease ABC subunit C [Staphylococcus aureus A9763]
 gi|257842074|gb|EEV66502.1| excinuclease ABC, C subunit [Staphylococcus aureus A9719]
 gi|257849355|gb|EEV73332.1| excinuclease ABC subunit C [Staphylococcus aureus A9299]
 gi|257851495|gb|EEV75434.1| excinuclease ABC subunit C [Staphylococcus aureus A8115]
 gi|257862788|gb|EEV85553.1| excinuclease ABC subunit C [Staphylococcus aureus A5937]
 gi|262075049|gb|ACY11022.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589707|gb|EFB94793.1| excinuclease ABC, C subunit [Staphylococcus aureus A10102]
 gi|282763659|gb|EFC03788.1| excinuclease ABC, C subunit [Staphylococcus aureus A8117]
 gi|285816826|gb|ADC37313.1| Excinuclease ABC subunit C [Staphylococcus aureus 04-02981]
 gi|294969386|gb|EFG45406.1| excinuclease ABC [Staphylococcus aureus A8819]
 gi|297176617|gb|EFH35880.1| excinuclease ABC [Staphylococcus aureus A8796]
 gi|312829539|emb|CBX34381.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315128544|gb|EFT84549.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329725205|gb|EGG61694.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           21172]
          Length = 593

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYCVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+ +++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|302332754|gb|ADL22947.1| glycosyl transferase, group 2 family protein [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 593

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITGFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+ +++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPVRGPKKDMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|330685730|gb|EGG97366.1| excinuclease ABC, C subunit [Staphylococcus epidermidis VCU121]
          Length = 594

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 177/613 (28%), Positives = 285/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++S+I N  F VT +
Sbjct: 15  VPLEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLIVTRTVKKGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++  +KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRK----CDKMPDKLCLYYHIGQCMGPCVYDVDLDKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL G +  +   +   M +A+   D+E A  +RD +  + ++      +       
Sbjct: 189 EISDFLHGEDKTILNHLQERMEKASESLDFERAKEYRDLIQHIHNLTKKQKIMSTDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVSKGWMCIQVFFIRQGNMIKRDTTMIPIQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + + +  ++  +  +   K       I  P +G K+++I+ A  NA  S   K       
Sbjct: 309 VHVPKHLDKDIIQSVVDTK-------IVQPSRGAKKEMIDLANHNAEVSLNNKFELIARD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTVKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------TPLPDLIIVDGGKGHMNG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I GIG  RK  LL++FG++K +  +S E L    G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIEGIGAKRKTKLLRTFGSIKKMKEASLEELKK-SGLP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  + +    
Sbjct: 581 ENVAKNLQHALQN 593


>gi|89889987|ref|ZP_01201498.1| excinuclease ABC, C subunit [Flavobacteria bacterium BBFL7]
 gi|89518260|gb|EAS20916.1| excinuclease ABC, C subunit [Flavobacteria bacterium BBFL7]
          Length = 599

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 188/621 (30%), Positives = 300/621 (48%), Gaps = 52/621 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVYQ  D   ++LYVGKA NL+KR+ SY   N+ ++RI  M+ +I  I   V  T
Sbjct: 13  LPTTPGVYQYYDKDHKLLYVGKAKNLKKRVSSYFTKNHDSYRIKSMVKKIVTIEHIVVET 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E++ALLLE ++IK   PR+NI+LRDDK++P++ I  K + P ++  R        Y+GPF
Sbjct: 73  EMDALLLENSLIKNRNPRYNIMLRDDKTYPWLCI-KKERFPRVFLTRRMIKDGSEYYGPF 131

Query: 126 ASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           +SV  V   ++ ++  + LR+C      D +   + + CL + I  C+GPC   +S   Y
Sbjct: 132 SSVKTVRALLDLIKGLYPLRTCKYDLSADKINAGKYKVCLEYHIGNCAGPCENLMSETAY 191

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            E +   +  + G   N  +     M +      +E A   +++L  L   Q+ +     
Sbjct: 192 AENIDNVRNIVKGDYKNASKHFESQMMELASNMQFEDAQRIKEKLEILQKYQSKSTVVNS 251

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
               +D FSL  ++  A I       G    + T  +K   E T+ ++L   + +     
Sbjct: 252 KITDVDVFSLISDETHAYINYLQLSHGAIVRSHTLEIKKKLEETDQELLEIAIIELRQRF 311

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
               + + +  E +               ++K+T+P+ G+K+KI++ +L NA     ++ 
Sbjct: 312 NSQCKEVYVPFEVKLGD------------QIKVTIPQLGDKKKIVDLSLRNAKFYRQEQF 359

Query: 357 ------STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                   +   + ++        L   P  IE +DNS+I G + V   VV       K 
Sbjct: 360 KTIKIVDPDRHVKRLMAQMKADLRLDEEPVHIECFDNSNIQGTNPVAACVVFKNGKPSKK 419

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR FN+    V+  DD A M  V+ RR+ +L++  E L              P +V++D
Sbjct: 420 DYRNFNIKT--VEGPDDFASMEEVVHRRYRRLLEEGEPL--------------PQLVVVD 463

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLS+    + +L +  +ITII IAK  +     E F+      L L+ R   L  I
Sbjct: 464 GGKGQLSSGLKAIDRLGLRGKITIIGIAKRLE-----ELFYPNDPVPLYLDKRSETLKVI 518

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           Q++R+EAHRF IT HR +R K A  + LD I GIG      LL+ F +VK I  +S + L
Sbjct: 519 QQMRNEAHRFGITHHRNKRSKQAIETELDTIPGIGEKTAVELLRHFRSVKRIKTASKKEL 578

Query: 590 ASIEGISKKIACKIYNHFHKN 610
             I G+S+  A KI + +   
Sbjct: 579 EDIIGVSR--AQKIIDFYKNE 597


>gi|298694434|gb|ADI97656.1| Excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 593

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 179/613 (29%), Positives = 283/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC   +   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYNVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+ +++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL++FG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGGKRKTLLLRTFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|86157705|ref|YP_464490.1| excinuclease ABC subunit C [Anaeromyxobacter dehalogenans 2CP-C]
 gi|119367624|sp|Q2IQH0|UVRC_ANADE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|85774216|gb|ABC81053.1| Excinuclease ABC subunit C [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 707

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 197/669 (29%), Positives = 309/669 (46%), Gaps = 74/669 (11%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIR 59
             +++P  PG Y M D AG V+YVGKA +L+ R++SY  +     R  +  +   + ++ 
Sbjct: 8   KLDELPAEPGCYLMKDRAGEVVYVGKASSLRSRVRSYFDAGRGDQRAFVALLDGLLGDLE 67

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-- 117
             VT +E EA+LLE  +IK+ +PRFN+ LRDDK F  + + ++H  P L   R       
Sbjct: 68  VIVTRSEKEAVLLENELIKKHRPRFNVRLRDDKDFIVLKLDERHPYPRLEVRRAREKRQP 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              YFGP++S  ++ +T+  + R F LR+C+D VF HR RPC+L+QI RC  PC  E+ +
Sbjct: 128 GARYFGPYSSASSIRETLRMVNRHFQLRTCSDHVFDHRKRPCILYQIHRCPAPCVYEVPA 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E+Y + V +A +FL G    L E++   M  A     +E A   RD+L A+         
Sbjct: 188 EEYRQSVEDAVEFLEGREGELVERLRGRMAGAAEGLRFEEAARLRDQLQAVERSLEKQRV 247

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D   LY       +Q      G+ +         + E    +ILS FL  +Y
Sbjct: 248 LMSDRGDRDVIGLYREGPDLVVQVLSMRAGKLQDAQAH-PFREQEFPAEEILSSFLSLYY 306

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ IL+  E  +   L     ++ G +V++  P++G K  +++ A  NA +    
Sbjct: 307 EHTDAPDEILVPLEPVQAEALADVLSERRGRRVRLLTPQRGAKADLLDVARRNAEQGFRA 366

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               +   +  L    K   L   P+ +E YD S   G  AVG  V + +    K  YR+
Sbjct: 367 WHEHDERREQALASLAKALHLARPPRWMECYDISTFQGALAVGSGVSMKDGEPDKANYRR 426

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V  QDD AM+  V+ RR  + +   +                PD++++DGGKG
Sbjct: 427 YKVK--AVAGQDDFAMLHEVVTRRLRRALGEGQ---------------LPDLIVIDGGKG 469

Query: 475 QLSAAQGVLKKLNVENR----------ITIISIAK------------------------- 499
           QL+AA    K L V  R          + ++ +AK                         
Sbjct: 470 QLNAALAAAKDLGVPTRPSPGNPDAPFVELVGLAKSRLVDGPALGTARVVARRGRRAEAR 529

Query: 500 -------------GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
                             +    F   + + +VL      L+ + RLRDEAHRFAIT HR
Sbjct: 530 LADAAEAAEKGFVSELARSPERVFLPGRKDPVVLRQNSAELFLLARLRDEAHRFAITFHR 589

Query: 547 K-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K RR++   S L+EI GIG  RKR LL+ FG ++ +  ++PE +A +EG   + A  ++ 
Sbjct: 590 KLRRERNFQSVLEEIPGIGEGRKRALLRHFGALRRVREATPEEIAQVEGFGPRQAAAVHA 649

Query: 606 HFHKNTSHT 614
            FH+  +  
Sbjct: 650 FFHRPDAPP 658


>gi|146320599|ref|YP_001200310.1| excinuclease ABC subunit C [Streptococcus suis 98HAH33]
 gi|145691405|gb|ABP91910.1| Nuclease subunit of the excinuclease complex [Streptococcus suis
           98HAH33]
          Length = 620

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 174/609 (28%), Positives = 298/609 (48%), Gaps = 41/609 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   +  G+++YVGKA NL+ R++SY    + T +   ++++I +  F 
Sbjct: 36  KLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDT-KTEALVAEIADFEFI 94

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+I+  KPR+NI+L+DDKS+P+I IT K + P L   R      G Y
Sbjct: 95  VTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFIKIT-KERHPRLLITRQIKKDGGQY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +T+  L+R +  R C     ++    CL + + +C        S   Y 
Sbjct: 154 FGPYPDVGAANQTLKLLERLYPFRKCKLPENKY----CLYYHLGQCLAHGDNMPSLSDYD 209

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           +   E  +FL+G +  + +++   M  A    ++E A  +RD L ++S ++     + + 
Sbjct: 210 KMAKEVAQFLTGHDDKIIKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAHD 269

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 270 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDAGEDFLTYIGQFYRDQQHL 329

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ ++ ++  +   K          P++GEK+++I  A  NA     +    
Sbjct: 330 IPSEVLIPQDIDQEAVEALVDTKVIK-------PQRGEKKQLINLATKNARVSLEQKFNL 382

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +P    RIE +DNS+IMG S V  MVV       K +YRK
Sbjct: 383 LEKNLEKTYGAVENIGQLLGIPTPV-RIEAFDNSNIMGTSPVSAMVVFENGVPNKKEYRK 441

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +    N V+  DD A MR VL+RR+S+++++                + PD++I+DGG+G
Sbjct: 442 Y--KINTVEGPDDYASMREVLQRRYSRVLRDG--------------LTPPDLIIIDGGQG 485

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+++  +   I I  + K  K     E  F    E + L       + + R++
Sbjct: 486 QVNVAKQVIEQ-ELGMSIPIAGLQKNDKHQT-HELLFGNPLEVVELPRNSQEFFLLHRIQ 543

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAI  HR+ R K ++S  LD I G+GP RK+ L++ F ++  I  +S + +A   
Sbjct: 544 DEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQTLMKHFKSIGNIQSASLQEIAEA- 602

Query: 594 GISKKIACK 602
           G+  K+A K
Sbjct: 603 GVPYKVADK 611


>gi|326566918|gb|EGE17057.1| excinuclease ABC subunit C [Moraxella catarrhalis 103P14B1]
 gi|326569751|gb|EGE19801.1| excinuclease ABC subunit C [Moraxella catarrhalis BC8]
 gi|326571643|gb|EGE21658.1| excinuclease ABC subunit C [Moraxella catarrhalis BC7]
          Length = 616

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/614 (33%), Positives = 313/614 (50%), Gaps = 32/614 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG+Y+ML  +G +LYVGKA +L+ R+ SY        +   ++ +I  I   +T  
Sbjct: 25  LPNRPGIYKMLGKSGEILYVGKAKSLKNRVGSYFAKTIEHPKTQALVQRIEQIEIIITRG 84

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFGP 124
           E EALLLE N+IK  +P +N+LLRDDKS+ YI I+   K P L   R      QG +FGP
Sbjct: 85  ETEALLLEQNLIKNHRPPYNVLLRDDKSYLYIYIST-DKFPRLSIGRGKGRYTQGRFFGP 143

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S    ++++  +QR F +RSC +S F  R RPCL +QIKRC  PC G +S+E+Y   V
Sbjct: 144 YPSARNAKESVQLMQRLFMIRSCTNSFFAQRQRPCLEYQIKRCKAPCVGMVSAEQYQSDV 203

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRM 242
             A  FL G +H ++  + + M +A    ++E A  +RDRLA +S +Q            
Sbjct: 204 RAALAFLQGHSHEVQAILVKKMEEAAAALNFEQAAFYRDRLAMISDLQAKQAVFRLQGEA 263

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYTD--KP 298
           D F++  +     +       GQ  G   +F      +  +N + L  FL  FY      
Sbjct: 264 DVFAIAADAGAVAVCVLTVRGGQVLGVKNYFPDDIEPAIKSNQERLKEFLLSFYFQVSDD 323

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I+ S   EE S+L      Q+G +  I       +   +  A +NA+ + + KL  
Sbjct: 324 LPDEIISSVAIEEASILADILQVQFGKRTTIKHKVTTHRDDWLSIANLNANNALSAKLKD 383

Query: 359 EISHQMILKDFTK--KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
               Q   +   +           RIE +D SH MG +A+G  VV  +NG  K  YR++ 
Sbjct: 384 SRELQARFEQLKQVLAPITTCTIDRIECFDISHTMGEAAIGSCVVFDQNGPKKRDYRQYA 443

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +H   +   DD A MR VL RR+++                      PD++++DGGKGQL
Sbjct: 444 IHD--ITAGDDYAAMRQVLMRRYTK-------------------HPLPDLLLIDGGKGQL 482

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           + A  VL +L       ++S+AKG  R AG+E       E + L      L+ I ++RDE
Sbjct: 483 NVAIEVLSELGKLTDTLLVSVAKGEGRKAGLEVLHFVTHEPIDLPADSKALHLIMQIRDE 542

Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT HRK+R KK + S L+ I G+G +R+R LL  FG ++ +  +S + +A ++GI
Sbjct: 543 AHRFAITAHRKKRDKKRSSSVLEVIPGLGQVRRRDLLNHFGGIQQLLGASQDEIAQVKGI 602

Query: 596 SKKIACKIYNHFHK 609
              +A  IY   H+
Sbjct: 603 GPMLAGTIYKALHE 616


>gi|78184688|ref|YP_377123.1| excinuclease ABC subunit C [Synechococcus sp. CC9902]
 gi|78168982|gb|ABB26079.1| Excinuclease ABC subunit C [Synechococcus sp. CC9902]
          Length = 679

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/632 (29%), Positives = 303/632 (47%), Gaps = 29/632 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            + +P  PG Y M D   R+LYVGK+  L+ R++SY  S +  + RI  M  Q+  I F 
Sbjct: 39  LKDIPAEPGCYLMRDGDDRILYVGKSKTLRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 98

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT +E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 99  VTDSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSESYPRIFITRRRRFRSPLD 158

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R F LR     + + RT  CL + I RC G C  +ISS+ 
Sbjct: 159 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHQDRT--CLNYSIGRCPGVCQEKISSDD 216

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +      G +  L+  +   M++   + DYESA   RD+L  L  +        
Sbjct: 217 YHQTLRKVAMVFQGRSDELQNLLQEQMHKYADRTDYESAARVRDQLQGLDQLTADQKMSL 276

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  ++ LA +Q      G+  G   +     +  +   IL   + + Y+
Sbjct: 277 PDSSVSRDVLALACDERLAAVQLFQMRAGKLVGRLGYTAD-AAGLSPGLILQRVIEEHYS 335

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+     + SLLE    +Q   KV+I  P++ +K  +IE    NA    
Sbjct: 336 QVDAVEVPPQLLVQHPLPQQSLLEEWLTEQRERKVQIHCPQRRQKADLIELVQRNAEFEL 395

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +    +    +  +D  +   LP  P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 396 LRAKQGQEQQALSTEDLAQLLDLPLPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 455

Query: 413 RKFNLHPNDV---KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-------YSFPS 462
           RK+ +  + +    + D  AM  ++  R         + L+    +Q+            
Sbjct: 456 RKYKIQSSSIRAGHSDDFMAMAEIMRRRFRRWARAKADGLDLGALRQKGGSALQTDGLND 515

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPD+V++DGGKGQLSA    L++LN+ + + + S+AK  +     E F   + + L    
Sbjct: 516 WPDLVMIDGGKGQLSAVMEALRELNLHDDLNVCSLAKQRE-----EVFLPGESQPLESEA 570

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA++ HR++R  +   S L +I G+G  R R LL  F ++  I
Sbjct: 571 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGAKRVRDLLSHFHSIDAI 630

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
             +S +TL+   G+   +A  I+N FH    +
Sbjct: 631 QLASVDTLSKAPGVGPVLAQDIFNFFHPTDEN 662


>gi|113954278|ref|YP_730568.1| excinuclease ABC subunit C [Synechococcus sp. CC9311]
 gi|119367853|sp|Q0IAF4|UVRC_SYNS3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|113881629|gb|ABI46587.1| excinuclease ABC, C subunit [Synechococcus sp. CC9311]
          Length = 651

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 182/630 (28%), Positives = 305/630 (48%), Gaps = 29/630 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            + +P  PG Y M D   R+LYVGK+  L+ R++SY  S++  + RI  M+ QI  I F 
Sbjct: 16  LKDIPTEPGCYLMRDADDRLLYVGKSKTLRSRVRSYFRSSHDLSPRIRLMVRQICEIEFI 75

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT +E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 76  VTDSEAEALALESNLIKNQQPHFNVLLKDDKKYPYLCITWSEDYPRIFITRRRRFRSPLD 135

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R F LR     ++ +RT  CL + I RC G C  ++SSE 
Sbjct: 136 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLYPNRT--CLNYSIGRCPGVCQEKVSSED 193

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +      G +  L++ + + M +   + D+ESA   RD+L  +  +        
Sbjct: 194 YHQILRKVAMVFQGRSDELRQLLNQQMERYAERLDFESAARIRDQLQGIDQLTADQKMSL 253

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++  + + A IQ      G+  G   F     ++     IL   + + Y+
Sbjct: 254 PDASVSRDVLAVAQDDHFAAIQLFQMRAGKLVGRLGFAAD-ATDLQAGLILQRVIEEHYS 312

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+  E  +  L+     +Q   KV++  P++ +K  +I+  + NA    
Sbjct: 313 QVDAVEIPPEVLVQHELPQQRLIAEWLSEQRERKVQVLHPQRRQKADLIDLVMRNAEFEL 372

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +   ++    +  +D  +   L   P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 373 GRARQSQEQQALANEDLAQLLELATPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 432

Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP--------S 462
           R++ +  + ++     D   M  ++ RRF +  + +       + +  S           
Sbjct: 433 RRYKIQSSSIQAGHSDDFMAMAEIMRRRFRKWARVKAEGADLDQVRRQSSSSLNMDGLHD 492

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPDVV++DGGKGQLSA    L++L++   + + S+AK  +     E F  +  + L    
Sbjct: 493 WPDVVMIDGGKGQLSAVMEALRELDLHEDLVVCSLAKQRE-----EIFLPEAKQPLESEP 547

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA+T HR++R ++   S L +I G+GP R R LL  F ++  I
Sbjct: 548 DQLGVSLLRRLRDEAHRFAVTFHRQQRGQRMKRSRLSDIPGLGPKRVRDLLAHFQSIDAI 607

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNT 611
             +S + L    G+   +A +I  +FH   
Sbjct: 608 QLASVDQLHQAPGVGLSLAKQIRAYFHPQE 637


>gi|306820848|ref|ZP_07454471.1| excision endonuclease subunit UvrC [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551120|gb|EFM39088.1| excision endonuclease subunit UvrC [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 605

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 183/618 (29%), Positives = 303/618 (49%), Gaps = 42/618 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P   GVY M +    ++YVGKA +L+ R++ Y  S NN   ++  M+S I    + VT
Sbjct: 14  KLPHSSGVYLMKNKNNEIIYVGKAVSLRNRVRQYFQSQNNMQEKVKAMVSHIEEFEYIVT 73

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EAL+LE N+IK  KP +NILLRDDK++PYI IT     P + K R        YFG
Sbjct: 74  DSEMEALILENNLIKEYKPPYNILLRDDKTYPYIKITLNEDYPRVLKTRKVEKDGAKYFG 133

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+++   V   I+ +  TF LR+C+ ++ +    + RPCL + I  C+GPC G +   +Y
Sbjct: 134 PYSNAFIVNDIIDLIHSTFKLRTCSRNIQKSIEKKERPCLSYYINICNGPCLGIVDKNEY 193

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
              + E   FL   +  + E + + M  A+ K DYE A+++RD++  +  +         
Sbjct: 194 DNTIVEVINFLESKSDVVIESLRQKMYDASKKLDYEKAMMYRDKINGMQEMLEKQKIVST 253

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
             +   D  ++    ++ C+   F   G+  GT  F    D     +++LS F++Q+Y +
Sbjct: 254 NSFMDKDFLAVEQGDDIYCVFIFFVRGGKVVGTENFIFDIDFNKDESEVLSSFVKQYYIN 313

Query: 297 KP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ- 354
               P+ I +S E E+  +L     K+   KV + +P +G+K+ +I+    NA  + ++ 
Sbjct: 314 SAYIPKEIYVSHEFEDMDVLAQLLSKKKESKVSVKLPIKGDKKDMIQLVKKNAAETISRK 373

Query: 355 ---KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                + + +  +I+K      +L     +IE YD S+I G  +VG  VV  +       
Sbjct: 374 EAVDKTKKDNMDLIMKQLKDILSLKTEIHKIESYDISNIQGVDSVGGQVVFVDGKKAPKL 433

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++ +    V   DD + +  +L RR                         PD+++LDG
Sbjct: 434 YRRYKVKT--VVGPDDYSSLEEILSRRIKH-------------------EDLPDLILLDG 472

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQ+S  + + ++  +   I +  + K  K +           +   LN    +  FI 
Sbjct: 473 GKGQVSVIRKLFEREKIS--IPVFGMYKDDKHTTMG---LCSDMDLFELNRHSKLYKFIA 527

Query: 532 RLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +++E HRFAI  HR  R KK ++S LD I GIG  RK+ LL  F ++  I  +S E L 
Sbjct: 528 SIQEEVHRFAIDYHRSLRNKKISFSKLDNIKGIGEKRKKTLLSHFKSINNIKNASIEELE 587

Query: 591 SIEGISKKIACKIYNHFH 608
            +  + KK A  IY +F 
Sbjct: 588 KV--VDKKSALSIYEYFK 603


>gi|49483309|ref|YP_040533.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425197|ref|ZP_05601623.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427860|ref|ZP_05604258.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430495|ref|ZP_05606877.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433257|ref|ZP_05609615.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436096|ref|ZP_05612143.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903694|ref|ZP_06311582.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905463|ref|ZP_06313318.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908437|ref|ZP_06316268.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910721|ref|ZP_06318524.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913921|ref|ZP_06321708.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918844|ref|ZP_06326579.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           C427]
 gi|282923966|ref|ZP_06331642.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957889|ref|ZP_06375340.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500956|ref|ZP_06666807.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509913|ref|ZP_06668622.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526500|ref|ZP_06671185.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427633|ref|ZP_06820265.1| excinuclease ABC [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591413|ref|ZP_06950051.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp.
           aureus MN8]
 gi|8134803|sp|Q9ZEH3|UVRC_STAAU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56749748|sp|Q6GHT9|UVRC_STAAR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|3776112|emb|CAA11405.1| excinuclease ABC, subunit C [Staphylococcus aureus]
 gi|49241438|emb|CAG40122.1| putative excinuclease ABC subunit C [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272173|gb|EEV04305.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274701|gb|EEV06188.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278623|gb|EEV09242.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281350|gb|EEV11487.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284378|gb|EEV14498.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313938|gb|EFB44330.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316654|gb|EFB47028.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           C427]
 gi|282321989|gb|EFB52313.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325326|gb|EFB55635.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328102|gb|EFB58384.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330755|gb|EFB60269.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595312|gb|EFC00276.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790038|gb|EFC28855.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920572|gb|EFD97635.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095961|gb|EFE26222.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467363|gb|EFF09880.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           M809]
 gi|295127991|gb|EFG57625.1| excinuclease ABC [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576299|gb|EFH95015.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438478|gb|ADQ77549.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193817|gb|EFU24212.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 593

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+ +++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|313890066|ref|ZP_07823701.1| excinuclease ABC, C subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121427|gb|EFR44531.1| excinuclease ABC, C subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 590

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 171/616 (27%), Positives = 286/616 (46%), Gaps = 43/616 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPDNPGCYLHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEMLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I++  P++NI L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTGSNTEALLLEINLIQKNMPKYNIKLKDDKSYPFIKITN-ELFPRLLITRQIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + V     + C  + + +C            + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCTNPV----NKVCFYYHLGQCKAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V + K FL+G +  + + +   M  A    ++E A   RD ++ ++ ++     +   
Sbjct: 182 GLVEDVKLFLNGKDDKIVDNLKEKMTLAAENMEFERAAEFRDLISGIAKLRTKQRIMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +E+ +  +             
Sbjct: 242 LKDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNEAEDDFLTYIGQFYQDKRHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  I +  E ++  +  I   K          P++GEK++++  A  NA     +    
Sbjct: 302 IPREIFIPAEVDQELVEAIVPTKVIK-------PQKGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   Q  ++   +   +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDLKKTQGAIESLGQLMGIARPE-RIEAFDNSNIQGTSPVAAMVVFVDGKASKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++K++                 PD++I+DGG G
Sbjct: 414 FKIKT--VHGPDDYASMREVIYRRYSRVLKDD--------------LIAPDLIIIDGGPG 457

Query: 475 QLSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           Q++ A+ V+  +L +   I I  + K  K     E  F      + L     + + + R+
Sbjct: 458 QVNIAKEVVHGQLGLS--IPIAGLQKNDKHQT-QELLFGDPLAVIDLPRNSEVFFLLHRI 514

Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           +DE HRFAIT HR+ R K ++S  LD I G+GP RK++LL+ F ++  I ++S + + S+
Sbjct: 515 QDEVHRFAITFHRQVRSKNSFSSKLDGIGGLGPKRKQVLLKHFKSLTAIRQASLDDITSL 574

Query: 593 EGISKKIACKIYNHFH 608
            GI +K+A  +   F+
Sbjct: 575 -GIPQKVAQTLLASFN 589


>gi|262383152|ref|ZP_06076289.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_33B]
 gi|301311748|ref|ZP_07217673.1| excinuclease ABC subunit C [Bacteroides sp. 20_3]
 gi|262296030|gb|EEY83961.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_33B]
 gi|300830308|gb|EFK60953.1| excinuclease ABC subunit C [Bacteroides sp. 20_3]
          Length = 611

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 174/617 (28%), Positives = 298/617 (48%), Gaps = 46/617 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG YQ  D  G ++YVGKA NL++R+ SY +  + +++   ++ QI +I++ V  T
Sbjct: 16  IPEKPGCYQYFDENGTIIYVGKAKNLKRRVSSYFNKVHDSNKTRVLVKQIRDIKYIVVDT 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E +ALLLE N+IK+ +PR+N+LL+DDK++P I++      P +++ R+       Y+GP+
Sbjct: 76  EEDALLLENNLIKQYRPRYNVLLKDDKTYPSIVV-KNEYFPRVFQTRNIVRDGSQYYGPY 134

Query: 126 ASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            S+   +  +  L+  + LR+C        + + R + CL + IKRC GPC G  S E+Y
Sbjct: 135 PSLFTAKVMLQMLKELYPLRTCKYPLTPESIAQGRYKVCLEYHIKRCKGPCEGLQSLEEY 194

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            + + E K+ L G    + + +   M     +  +E A   +++   + + ++ +     
Sbjct: 195 QQNISEIKEILRGNISQISKHLYEEMQSLAAELKFEEAQKIKEKYEVIENYRSKSTVVTP 254

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           + + +D F++  N + A +       G      TF  K   + T  ++LS  + +     
Sbjct: 255 MLHNIDVFTIIENDHSAYVNFMHIGNGAIVQAYTFEYKKRLDETKEELLSLGIIEMRNRF 314

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
                 ++                     V  T+P++G+K+K+++ + +N  +    +L 
Sbjct: 315 KSTAREIIVP----------FKLDMQLENVTFTIPQRGDKKKLLDLSEMNVKQFKVDRLK 364

Query: 358 T------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                  E  +  ILK+  +   L  +P  IE +DNS+I G  AV   VV       K +
Sbjct: 365 QAEKLNPEQRNTRILKEIQEALHLEKLPAHIECFDNSNIQGSDAVAACVVFKMGKPSKQE 424

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I DG
Sbjct: 425 YRKYNIKT--VVGPDDYASMKEVVRRRYGRAIEER--------------SPLPDLIITDG 468

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQ+   + V++   +   I I  +AK  K     E  F      + + +  P+ + + 
Sbjct: 469 GKGQMEVVRSVVED-ELGLSIPIAGLAKDGKHRTS-ELLFGFPPVTVGMRLDSPLFHLLT 526

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R++DE HRFAIT H+ +R K    S LD I GIG   K LLL+ F +VK I  +S E L 
Sbjct: 527 RIQDEVHRFAITFHKDKRSKTQTKSELDTIKGIGEKTKVLLLRHFKSVKRIKEASFEELK 586

Query: 591 SIEGISKKIACKIYNHF 607
           S+  I +  A  +    
Sbjct: 587 SV--IGEAKAKALQEGL 601


>gi|242279487|ref|YP_002991616.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638]
 gi|242122381|gb|ACS80077.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638]
          Length = 602

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 206/616 (33%), Positives = 308/616 (50%), Gaps = 34/616 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
             P  PGVY M D +GR++YVGKA  L+KR+ SY  + + HT +   ++S+I++I   VT
Sbjct: 9   DFPALPGVYLMKDSSGRIIYVGKARELRKRLASYFRAMHKHTPKTRVLVSKIHSIDTLVT 68

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEA++IK+ +PR+N++LRDDK +    +  K + P L   R        YFG
Sbjct: 69  GTEKEALLLEASLIKKHRPRYNVVLRDDKQYVLFQLDKKSEYPRLRMTRKVVRDGSVYFG 128

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S     +T   L + F LR C+DS FR+R RPCL   I +C GPC   +  + YME 
Sbjct: 129 PYTSSYFARETWKVLGKVFPLRKCSDSAFRNRVRPCLYHDIGQCLGPCVNVVPRQDYMEL 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242
           VH+ +  LSG   +L   + R M +A+   D+ESA   RD++ A+         +     
Sbjct: 189 VHQVEMLLSGRAGDLIGSLRRQMEEASDALDFESAAKFRDQIKAIQKTVEKQSVVLGERS 248

Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPC 299
             D  +L  +     +   F   G+      FF    S     ++L+ F+ QFY+  K  
Sbjct: 249 DIDVIALAESSQGVGLGLLFIRKGRLLDKKHFFWPGLSLEDGEEVLNSFVSQFYSSTKFI 308

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  + +  E +     E+   ++    V+I  P  GE+++++E A  NA          E
Sbjct: 309 PPKLFVPFEFDMQGATEL-LSERSKSTVRIVTPHSGEEKRLLEIARKNAAL---GLKEKE 364

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            ++  IL     K  L   P+RIE  D SH+ G      MVV  E    K+QYR +   P
Sbjct: 365 KNNNNILDLLAGKLKLSGPPQRIECIDASHLGGEGMRVGMVVFEEGKPEKSQYRTY-AFP 423

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
               + DD A +   +                   K+  S P W D++++DGGKGQL++ 
Sbjct: 424 ELEHSSDDYAALFHWV------------------IKRIDSGPPWADLILIDGGKGQLASV 465

Query: 480 QGVLKK-LNVENRIT-IISIAKGPKRSAGM---EKFFVKKGEALVLNMRDPILYFIQRLR 534
           +    +    +  I  + SIAKGP R AG      F   +   L L    P L ++QR+R
Sbjct: 466 EKAFAENWKYDEPIPSLASIAKGPTRKAGELEDRIFRPGRKNHLPLKGGSPELLYLQRVR 525

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRF I   RK R+KK   S +  + GIGP   RLL   FG+V+ +  +S E L++++
Sbjct: 526 DEAHRFVIGRQRKSRKKKVLQSEVLSLPGIGPKTARLLWDEFGSVQKMKEASVEDLSNVQ 585

Query: 594 GISKKIACKIYNHFHK 609
           GI KK A +I++ F +
Sbjct: 586 GIGKKRAQQIFDAFRE 601


>gi|206602222|gb|EDZ38704.1| Excinuclease ABC, C subunit (UvrC) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 632

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 181/623 (29%), Positives = 296/623 (47%), Gaps = 34/623 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
            +PE PGVY M    G VLYVGK+ +L+ R++SY       + RI  ++S++ ++    T
Sbjct: 23  TLPEEPGVYLMKSETGEVLYVGKSRSLKDRVRSYFQETRVRSARIALLVSRVRDLEIIRT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE++AL+LE  +IKR +PR+N+LLRDDK++PY+  +     P L   R        YFG
Sbjct: 83  KTELDALILENTLIKRYRPRYNVLLRDDKTYPYLKFSWNDPFPRLTITRRVRNDGNLYFG 142

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182
           P+ +  A++ T+  ++RTF L +C   + +    RPC+ +QIKRC GPC   +++E    
Sbjct: 143 PYPNPSAMKDTLRLIRRTFPLATCTIPLDQPTLERPCVEYQIKRCLGPCVAGLTTETEYR 202

Query: 183 FVHEAKK-FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
            V    + FL G +++L   +   M       ++E A   RDR   +  +   +   +  
Sbjct: 203 QVAMGVRLFLQGKSNDLLFLLENEMKARAKNLEFEKAAAVRDRYRNVLQVLEKHTVSFPF 262

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            + +D   L  +   A +       G   G     LK   E+++ ++L  FL QFY  + 
Sbjct: 263 QHPIDGLYLARSGTTALMLVMHIRNGLLIGKEEVELKNTEEASDEELLVAFLEQFYGKES 322

Query: 299 --CPENILLSEEAEETSLL--EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
              P  ILL     E  L+       K+    V+I  PK+G+K+ I++    NA  +   
Sbjct: 323 AFLPGEILLPVSLPEEDLMTLSWMSEKKGEDPVRIISPKRGDKKMILDLVRENAEEALNA 382

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           +   +++   +L +          P+ +   D S+      V  +V   +    K+ YRK
Sbjct: 383 REKRKLNSTELLDEARSLLKRDRPPRLLCCVDISNTGDLLPVASLVTFQDGKPEKSLYRK 442

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +     K QDD  M+  V+ER++                        PD++++DGG  
Sbjct: 443 FRIR--YEKGQDDFKMLSEVMERQYR-------------------ENPLPDLLVIDGGPL 481

Query: 475 QLSAAQGVLKKLNVENRI-TIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQR 532
           QL A    L+ +   +    ++S+AK        E  FF  +   L+L    P+ + + R
Sbjct: 482 QLDACVRTLEDMGHHDASRRVVSLAKERTNKNKSERIFFPGQENPLILPGHHPVTHLLVR 541

Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFAI  HR  R++   +S L  I G+GP R++ LLQSFG+VK +  ++ E +  
Sbjct: 542 LRDEAHRFAIKYHRTLREEYLTHSRLLNIPGVGPAREKKLLQSFGSVKNLMEATIEDIVQ 601

Query: 592 IEGISKKIACKIYNHFHKNTSHT 614
             G+S  ++  IY     N    
Sbjct: 602 NTGLSVALSTSIYQSLRDNQDDP 624


>gi|332522952|ref|ZP_08399204.1| excinuclease ABC, C subunit [Streptococcus porcinus str. Jelinkova
           176]
 gi|332314216|gb|EGJ27201.1| excinuclease ABC, C subunit [Streptococcus porcinus str. Jelinkova
           176]
          Length = 597

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 169/620 (27%), Positives = 285/620 (45%), Gaps = 41/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPDSPGCYLHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEMLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I++  P++NI L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTGSNTEALLLEINLIQKNMPKYNIKLKDDKSYPFIKITN-EIFPRLLITRQIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + V     + C  + + +C+           + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCTNPV----NKVCFYYHLGQCNAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V + K FL+G +  + + +   M  A    ++E A   RD ++ ++ ++     +   
Sbjct: 182 GLVEDVKLFLNGKDDKIVDNLKEKMTVAAENMEFERAAEFRDLISGIAKLRTKQRIMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            + + +  +             
Sbjct: 242 LKDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNNAEDDFLTYIGQFYQDKRHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  I +  E ++  +  I   K          P++GEK++++  A  NA     +    
Sbjct: 302 IPSEIFIPSEVDQELVEAIVPTKVIK-------PQRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   Q  ++   +   +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDLKKTQGAIESLGQLMGIARPE-RIEAFDNSNIQGTSPVAAMVVFVDGKASKQDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V+  DD A MR V+ RR+S+++K++                 PD++I+DGG G
Sbjct: 414 YKIKT--VQGPDDYASMREVIYRRYSRVLKDD--------------LVAPDLIIIDGGPG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V+ +  +   I I  + K  K     E  F      + L       + + R++
Sbjct: 458 QVNIAKDVVHR-QLGLSIPIAGLQKNDKHQT-QELLFGDPLAVIDLPRNSEAFFLLHRIQ 515

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K +  S LD I+G+GP RK+ LL+ F ++  IS++S + + S+ 
Sbjct: 516 DEVHRFAITFHRQVRIKNSFSSKLDGIDGLGPKRKQALLKHFKSLTAISQASLDDITSL- 574

Query: 594 GISKKIACKIYNHFHKNTSH 613
           GI +K+A  +   F    + 
Sbjct: 575 GIPQKVAESLLASFANKEAE 594


>gi|150009554|ref|YP_001304297.1| excinuclease ABC subunit C [Parabacteroides distasonis ATCC 8503]
 gi|255013153|ref|ZP_05285279.1| excinuclease ABC subunit C [Bacteroides sp. 2_1_7]
 gi|256838286|ref|ZP_05543796.1| excinuclease ABC, C subunit [Parabacteroides sp. D13]
 gi|298373959|ref|ZP_06983917.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_19]
 gi|149937978|gb|ABR44675.1| excinuclease ABC subunit C [Parabacteroides distasonis ATCC 8503]
 gi|256739205|gb|EEU52529.1| excinuclease ABC, C subunit [Parabacteroides sp. D13]
 gi|298268327|gb|EFI09982.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_19]
          Length = 611

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 173/617 (28%), Positives = 298/617 (48%), Gaps = 46/617 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG YQ  D  G ++YVGKA NL++R+ SY +  + +++   ++ QI +I++ V  T
Sbjct: 16  IPEKPGCYQYFDENGTIIYVGKAKNLKRRVSSYFNKVHDSNKTRVLVKQIRDIKYIVVDT 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E +ALLLE N+IK+ +PR+N+LL+DDK++P I++      P +++ R+       Y+GP+
Sbjct: 76  EEDALLLENNLIKQYRPRYNVLLKDDKTYPSIVV-KNEYFPRVFQTRNIVRDGSQYYGPY 134

Query: 126 ASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            S+   +  +  L+  + LR+C        + + R + CL + IKRC GPC G  S E+Y
Sbjct: 135 PSLFTAKVMLQMLKELYPLRTCKYPLTPESIAQGRYKVCLEYHIKRCKGPCEGLQSLEEY 194

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            + + E K+ L G    + + +   M     +  +E A   +++   + + ++ +     
Sbjct: 195 QQNISEIKEILRGNISQISKHLYEEMQSLAAELKFEEAQKIKEKYEVIENYRSKSTVVTP 254

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           + + +D F++  N + A +       G      TF  K   + +  ++LS  + +     
Sbjct: 255 MLHNIDVFTIIENDHSAYVNFMHIGNGAIVQAYTFEYKKRLDESKEELLSLGIIEMRNRF 314

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
                 ++                     V  T+P++G+K+K+++ + +N  +    +L 
Sbjct: 315 KSTAREIIVP----------FKLDMQLENVTFTIPQRGDKKKLLDLSEMNVKQFKVDRLK 364

Query: 358 T------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                  E  +  ILK+  +   L  +P  IE +DNS+I G  AV   VV       K +
Sbjct: 365 QAEKLNPEQRNTRILKEIQEALHLEKLPAHIECFDNSNIQGSDAVAACVVFKMGKPSKQE 424

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I DG
Sbjct: 425 YRKYNIKT--VVGPDDYASMKEVVRRRYGRAIEER--------------SPLPDLIITDG 468

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQ+   + V++   +   I I  +AK  K     E  F      + + +  P+ + + 
Sbjct: 469 GKGQMEVVRSVVED-ELGLSIPIAGLAKDGKHRTS-ELLFGFPPVTVGMRLDSPLFHLLT 526

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R++DE HRFAIT H+ +R K    S LD I GIG   K LLL+ F +VK I  +S E L 
Sbjct: 527 RIQDEVHRFAITFHKDKRSKTQTKSELDTIKGIGEKTKVLLLRHFKSVKRIKEASFEELK 586

Query: 591 SIEGISKKIACKIYNHF 607
           S+  I +  A  +    
Sbjct: 587 SV--IGEAKAKALQEGL 601


>gi|306818853|ref|ZP_07452575.1| excision endonuclease subunit UvrC [Mobiluncus mulieris ATCC 35239]
 gi|304648539|gb|EFM45842.1| excision endonuclease subunit UvrC [Mobiluncus mulieris ATCC 35239]
          Length = 702

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 190/696 (27%), Positives = 307/696 (44%), Gaps = 94/696 (13%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
              ++P  PGVY+  D  GRV+YVGKA NL+ R+ SY         R   M++   ++ +
Sbjct: 8   KPAEIPTAPGVYRWRDAHGRVIYVGKAKNLRNRLTSYFVDPAKLHPRTAKMVATAESVSW 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +EVEAL LE   IK   P+FN++ +DDKS+PY  +T   + P +   R +      
Sbjct: 68  VVVGSEVEALTLEYTWIKEYDPKFNVMFKDDKSYPYFAVTLNQEFPRMGVLRSAHQRGVR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP---CLLFQIKRCSGPCTGEISS 177
           YFGP+ +V A+ +T + L+  F +R+C D VF         CL   I RCS PC G IS+
Sbjct: 128 YFGPYTAVWAIRQTSDLLETVFPVRTCTDGVFARARAAGRACLKGYIGRCSAPCIGRISA 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            ++ E  +    F+SG    L   +   M   +    +E A   RD+L AL  +   N  
Sbjct: 188 AEHRELANRVCDFMSGHEAGLLRDLENQMWAESKAFRFEEAAKKRDQLEALRKVLEKNAV 247

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +     D F+L  ++    +Q  +   G+ RG   +    + +   ++++S  L Q Y
Sbjct: 248 VMDTDTDADLFALAADELQVSVQVFYVRAGRIRGQRGWISTIEEDVDTSELMSLALEQIY 307

Query: 295 TDKP---------------------------CPENILLSEEAEETSLLEISFFKQYGYKV 327
                                           P+ IL+S    + + LE       G KV
Sbjct: 308 GQVAAKLAQSGGAQLREPSSATDVAHFDTTYIPKQILVSVIPADPASLEAWLSGLRGSKV 367

Query: 328 KITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIE 383
            I  P++G KR+ +++  +NA        T++ S      + L +  +   +     R+E
Sbjct: 368 TIRRPQRGMKREAVKRVELNAVDGLRLYKTRRASDLTQRNLALNELGRALGIDPPL-RVE 426

Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC-AMMRMVLERRFSQL 442
            YD SH  G   VG MVV  +    KN YRKF +  +  +   D    M  VL RRF +L
Sbjct: 427 CYDISHTQGTFQVGSMVVFEDGAPRKNAYRKFTVRGSQGQGAADDTEAMNEVLRRRFERL 486

Query: 443 IKNEENLNFHPK-----------------------------------------------K 455
           I+ E       +                                               +
Sbjct: 487 IQEETPAPHEVEPAVTDRGDPAARYVGESSVAGDVGDAASRGANPNPGEGLSGDPSGEIR 546

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
           +   F   PD+V++DG   Q+ AA+  +    V + I ++ +AK  +     E + V   
Sbjct: 547 EPKRFSYRPDLVVVDGALPQVHAARAAMDAAGVWD-IPVVGLAKRLE-----EVWTVDSD 600

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574
             ++       LY +Q LRDE+HRFAIT HRK+R +    S LD I G+GP +++ LL+ 
Sbjct: 601 FPVIFPRTSTALYLLQYLRDESHRFAITAHRKKRGQAMTRSVLDGIPGLGPAKQKALLKH 660

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           FG+++ I R+S E ++ + G  + +A ++  +  +N
Sbjct: 661 FGSLRQIRRASAEDISKVPGFGRILATQVVKYLQEN 696


>gi|283470356|emb|CAQ49567.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 593

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 285/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+++++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKEMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|295093831|emb|CBK82922.1| Excinuclease ABC subunit C [Coprococcus sp. ART55/1]
          Length = 624

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/622 (30%), Positives = 304/622 (48%), Gaps = 37/622 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L  R+  Y  +    + +I  M+S I    +
Sbjct: 24  ELKKLPHVPGVYLMHDSGDHIIYVGKAIDLYNRVHQYFQTGYKKSPKIQKMVSHIAWFEY 83

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +E+EAL+LE N+IK  +P +N +L DDK +PYI IT +   P +            
Sbjct: 84  IVCGSEIEALVLECNLIKEHRPHYNTMLTDDKGYPYIRITVEEDYPRILYSHQMKRDHSK 143

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ +  AV+  I  L++ + +RSC   + R  +  RPCL  QIK+C  PC G IS E
Sbjct: 144 YFGPYTNSKAVKDIIELLKKLYHIRSCNKVLPRDMSLERPCLYHQIKQCMAPCQGYISKE 203

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
            Y + V +A  FL+G + ++   + + M +     ++E A   RD + ++ HI++     
Sbjct: 204 DYNKNVQDAISFLNGNHGHVIRDLEKQMKELAEDMEFEQAAEIRDLIKSIHHIESTQRVG 263

Query: 236 DSIYNRMDCFSLYHN-KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           D+  +  D  ++  +  N   I   F   G+  G   + +   +    + I+  FL+Q+Y
Sbjct: 264 DTSADDRDVIAMATDLGNECVISIFFIRSGKMIGREHYHMSGVNAEAYSTIMESFLKQYY 323

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
              P  P+ I++ ++ E+  ++E     + G +V I VP++G+K+K+++ A  NA     
Sbjct: 324 ASTPYLPKEIIIEQQIEDYKVIEEYLSARRGSQVHIIVPQKGDKQKLLKLAKDNAFLVMN 383

Query: 354 QK----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           Q        +   +    +  +   +     R+E +D SHI G  +V  MVV       K
Sbjct: 384 QDADKLKREKERTEGAANELAQLIGVSSAR-RLEAFDISHISGYHSVASMVVFENGRAKK 442

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           N YRKF L    +   DD A MR VL RRF+                +  F  +PDV+++
Sbjct: 443 NDYRKFKLRT--IDGPDDYASMREVLTRRFT----------------DERFNIYPDVLMM 484

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG+GQ++ A  VL +L +   I +  + K                + +           
Sbjct: 485 DGGRGQVNIALEVLDELGL--NIPVCGMVKDDHHRTRG---LYYNNKEIDFPANTQAFNM 539

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           I RL+DEAHRFAI  HR  R K+  +S LD+I GIGP R++ LL  F  +  I  +S   
Sbjct: 540 ITRLQDEAHRFAIEYHRSLRSKSQIHSVLDDIEGIGPARRKALLAYFKDIDKIRAASIAD 599

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           L   +G++K  A  +YN FH +
Sbjct: 600 LEIPQGMNKTAATAVYNFFHND 621


>gi|282882339|ref|ZP_06290967.1| excinuclease ABC, C subunit [Peptoniphilus lacrimalis 315-B]
 gi|281297760|gb|EFA90228.1| excinuclease ABC, C subunit [Peptoniphilus lacrimalis 315-B]
          Length = 619

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/617 (31%), Positives = 310/617 (50%), Gaps = 24/617 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           Q+P+ PGVY M +    ++YVGKA +L+KR++ Y  S    + ++  M+S I +  + + 
Sbjct: 10  QLPDKPGVYIMKNSTDEIIYVGKAKSLRKRVRQYFGSYGKSSAKVKSMVSHIYDFEYIIV 69

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L+LE+N+IK   P++NILLRDDK +PYI +T     P + K R        YFG
Sbjct: 70  ENEVESLILESNLIKDNLPKYNILLRDDKQYPYIKVTTNELYPRVMKTRRILKDGAKYFG 129

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYM 181
           P+  V AV  +I++ +  F LR+C+ ++ ++  + RPCL F I +C GPC G +    Y 
Sbjct: 130 PYPDVYAVNDSIDTFESLFPLRTCSLNMEKNMGKYRPCLNFYIGKCLGPCQGNVDENSYK 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN----DS 237
           + + E   FLS  +  +  ++   M + +   +YE A   RDR+  L  ++         
Sbjct: 190 KMIDEILDFLSLKSDAILTRLEDKMKEFSYNLEYEKAAEIRDRIKNLKELREKQLISNPM 249

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
             N  D  +L    +   IQ  F   G+  G   + L         +I S F++QFY   
Sbjct: 250 STNDKDIIALAKGIDEVLIQIFFIRDGKIIGREHYMLNDYFNEPLEEIFSAFIKQFYNGT 309

Query: 298 P-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ I++ EE  +  +LE     +   KV ITVP+ G+K+++I+    NA     +  
Sbjct: 310 SYIPKEIIIEEEPAQKEVLEEWLSTKRSNKVTITVPQIGQKKELIQMVHKNALDMINKYG 369

Query: 357 STEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                        L++ T    L     RIE YD S+I G  +VG MVV  +    K+ Y
Sbjct: 370 DKYAKRAKSNALALEEITDILGLDIKLNRIEAYDISNISGVESVGSMVVFEKGESKKSDY 429

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RKF +    V   +D A ++ VL RRF + I    +    P     SF  +PD++++DGG
Sbjct: 430 RKFRIKT--VIGPNDYASLKEVLTRRFLRGINERIDKEKGPS----SFSRFPDMIMMDGG 483

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQ++ A  VLK+L V   I +I + K    +       +   +   L++       I +
Sbjct: 484 KGQVNIALDVLKELGV--NIVVIGLVKDDFHTTRG---IIYNNKEYSLDLDSKGYKMIYK 538

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +++EAHRFAI  HR  R K    S LD+I  IG  RK  LL+ F ++  I ++S + L  
Sbjct: 539 IQEEAHRFAINYHRSLRNKDMFKSELDDIPLIGEKRKNNLLKHFKSLDKIKKASVDELKE 598

Query: 592 IEGISKKIACKIYNHFH 608
           + G+  + A  +YNHF+
Sbjct: 599 VSGMDIRSAESLYNHFN 615


>gi|57650256|ref|YP_186020.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           COL]
 gi|151221270|ref|YP_001332092.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161353528|ref|YP_499646.2| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|161509321|ref|YP_001574980.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|162138564|ref|YP_493743.2| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|221140456|ref|ZP_03564949.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253731759|ref|ZP_04865924.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258451843|ref|ZP_05699864.1| excinuclease ABC, C subunit [Staphylococcus aureus A5948]
 gi|262048727|ref|ZP_06021609.1| excinuclease ABC subunit C [Staphylococcus aureus D30]
 gi|262051666|ref|ZP_06023885.1| excinuclease ABC subunit C [Staphylococcus aureus 930918-3]
 gi|282919923|ref|ZP_06327652.1| excinuclease ABC, C subunit [Staphylococcus aureus A9765]
 gi|284024071|ref|ZP_06378469.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           132]
 gi|294848137|ref|ZP_06788884.1| excinuclease ABC [Staphylococcus aureus A9754]
 gi|304381297|ref|ZP_07363950.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|71153397|sp|Q5HGT7|UVRC_STAAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367842|sp|Q2FHT5|UVRC_STAA3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367843|sp|Q2FZD0|UVRC_STAA8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038121|sp|A6QG48|UVRC_STAAE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038122|sp|A8Z1S8|UVRC_STAAT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|57284442|gb|AAW36536.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           COL]
 gi|150374070|dbj|BAF67330.1| uvr ABC system protein, C subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368130|gb|ABX29101.1| excinuclease ABC subunit UvrC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724488|gb|EES93217.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257860451|gb|EEV83278.1| excinuclease ABC, C subunit [Staphylococcus aureus A5948]
 gi|259160401|gb|EEW45426.1| excinuclease ABC subunit C [Staphylococcus aureus 930918-3]
 gi|259163183|gb|EEW47743.1| excinuclease ABC subunit C [Staphylococcus aureus D30]
 gi|269940640|emb|CBI49019.1| putative excinuclease ABC subunit C [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282594639|gb|EFB99623.1| excinuclease ABC, C subunit [Staphylococcus aureus A9765]
 gi|294824937|gb|EFG41359.1| excinuclease ABC [Staphylococcus aureus A9754]
 gi|302750969|gb|ADL65146.1| glycosyl transferase, group 2 family protein [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340280|gb|EFM06221.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315196870|gb|EFU27213.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141039|gb|EFW32886.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143096|gb|EFW34886.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313814|gb|AEB88227.1| UvrABC system protein C [Staphylococcus aureus subsp. aureus T0131]
 gi|329730733|gb|EGG67112.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           21189]
          Length = 593

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+ +++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|86134938|ref|ZP_01053520.1| excinuclease ABC, C subunit [Polaribacter sp. MED152]
 gi|85821801|gb|EAQ42948.1| excinuclease ABC, C subunit [Polaribacter sp. MED152]
          Length = 601

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 177/624 (28%), Positives = 296/624 (47%), Gaps = 52/624 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVYQ  D   +++YVGKA NL+KR+ SY    + + +   ++  IN ++ 
Sbjct: 7   LQIKTLPSSPGVYQYFDKEEKLIYVGKAKNLKKRVSSYFTKTHDSGKTRVLVKNINTVKH 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ KP++N+LL+DDK++P+I I  K + P ++  R        
Sbjct: 67  IVVNTETDALLLENNLIKKYKPKYNVLLKDDKTYPWICI-KKERFPRVFMTRRVIKDGSE 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175
           Y+GP+ SV  ++  +  ++  + LR+C   + R      + + CL + +  C GPC    
Sbjct: 126 YYGPYTSVRTIKALLELIKELYTLRTCKYDLSREKINTGKYKVCLEYHLGNCLGPCEALE 185

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           +   Y   + E +  + G      E++   M     K ++E A   +++L  LS+ Q  +
Sbjct: 186 TEAHYNNSIKEIRNIIKGNFKESLERLNTLMMGFAEKMEFEKAQRIKEKLDRLSNYQAKS 245

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  N +D FS+  +K            G    + T  +K   E ++ ++L  F+ +
Sbjct: 246 TIVNPTINNVDVFSIISDKTHGYANFIKISNGSIIQSHTTEIKKKLEESDKELLELFIFE 305

Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                      I +  +                  VK+T+PK G+K++I+E +  NA   
Sbjct: 306 IRQRYNSTSPEIYVPFQVNIGE------------NVKVTIPKVGDKKRIVELSERNAKYY 353

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
             ++L        +   + I+        L   P+ IE +DNS+I G + V   VV  + 
Sbjct: 354 KLEQLKQIKIVDPDRHVKRIMAQMKADLRLKEEPRHIECFDNSNIQGTNPVAACVVFRDG 413

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K +YR +N+    V   DD A M  V+ RR+ +L+   E+L              P 
Sbjct: 414 KPSKKEYRHYNIKT--VVGPDDFASMEEVVFRRYKRLLSEGESL--------------PQ 457

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQLS+A   L+ L +  +I II IAK  +     E ++      L L+ +  
Sbjct: 458 LIIIDGGKGQLSSAVKSLEILGLRGKIAIIGIAKRLE-----EIYYPDDPIPLYLDKKSE 512

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L   Q LR+EAHRF IT HR +R K+   S L+ I  +G      LL+ F + K +  +
Sbjct: 513 TLKITQFLRNEAHRFGITFHRNKRSKSAIQSELESIPDVGKQTITTLLRKFKSAKRVKEA 572

Query: 585 SPETLASIEGISKKIACKIYNHFH 608
           S + L ++  I    A K+YN +H
Sbjct: 573 SLDELKAV--IGNARALKVYNFYH 594


>gi|329728762|gb|EGG65183.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           21193]
          Length = 593

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLQVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+ +++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|282916395|ref|ZP_06324157.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           D139]
 gi|282319835|gb|EFB50183.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           D139]
          Length = 593

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 286/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I +  F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRHFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+++++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKEMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|167752742|ref|ZP_02424869.1| hypothetical protein ALIPUT_01003 [Alistipes putredinis DSM 17216]
 gi|167659811|gb|EDS03941.1| hypothetical protein ALIPUT_01003 [Alistipes putredinis DSM 17216]
          Length = 605

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 190/620 (30%), Positives = 304/620 (49%), Gaps = 51/620 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVYQ LD  G ++YVGKA +L+KR+ SY   +  H+ ++  ++ QI  IR  V  
Sbjct: 16  LPLSPGVYQFLDKNGAIIYVGKAKSLRKRVSSYFMQNKEHSAKVQVLVRQIAAIRHIVVD 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE ++IK L+PR+NILL+DDK++P+I++  +   P +   R  +     YFGP
Sbjct: 76  TETDALLLENSLIKTLQPRYNILLKDDKTYPWIVV-RREPFPRVQSTRILNRDGSQYFGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           + SV      +  ++    LR+C+ +     + + R   CL + +  C GPC G  S E+
Sbjct: 135 YGSVMMQRSILEFIREVIPLRTCSLNLSPAAIAKGRYSVCLQYHLGNCKGPCVGAQSEEE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y   V      L G    ++  + + M  A     +E A  ++ RL AL +  + +    
Sbjct: 195 YDALVDMTVSILKGDLRPVRTYLEKEMEAAARNLKFEVAQRYKTRLDALDNYSSKSVIVS 254

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ--FY 294
                +D FSL  + ++A         G   G  T  L T  ++  AQ+L+  ++     
Sbjct: 255 ARIVDVDVFSLLVDDDVAYCNFLRIRHGSVVGVYTIRLTTGIDTDPAQMLTLAIQHIAET 314

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                 + +++        L +          V  TVPK+GEK  ++E +L +A     +
Sbjct: 315 IAGTLAKEVIVPYLPSAAQLFD---------GVTFTVPKRGEKLDLLEFSLKSARIYRAE 365

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E   + ++    K+  L   P+ IE +DNS++ G + V   VV  +    
Sbjct: 366 QLKNLEIKNPERHTERLMAAMQKELHLDRPPRHIECFDNSNLQGTNPVASCVVFRDGKPS 425

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           + +YR FN+    V   DD A MR ++ RR+S+LI     L              PD++I
Sbjct: 426 RKEYRHFNIKT--VIGADDFASMREIVFRRYSRLIAEGAEL--------------PDLII 469

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQLS+A  VL +L +E ++ I+ +AK  +     E FF        L+     L 
Sbjct: 470 VDGGKGQLSSAYAVLCELGIEKQVPIVGLAKRIE-----EIFFPGDPMPYYLSRTGEPLK 524

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +  +RDEAHRF IT HR++R K   +S L+ I G+GP    LLL+ F TV+ I  +  E
Sbjct: 525 VVCHIRDEAHRFGITFHRQKRSKGFIHSELENIEGVGPKTIELLLRHFRTVEKIRTAPAE 584

Query: 588 TLASIEGISKKIACKIYNHF 607
            L+++ G     A ++  HF
Sbjct: 585 ELSALVG--PAKAARLLVHF 602


>gi|189464896|ref|ZP_03013681.1| hypothetical protein BACINT_01240 [Bacteroides intestinalis DSM
           17393]
 gi|189437170|gb|EDV06155.1| hypothetical protein BACINT_01240 [Bacteroides intestinalis DSM
           17393]
          Length = 611

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 175/625 (28%), Positives = 310/625 (49%), Gaps = 49/625 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 19  NLPESPGIYQYLNTEGVIIYVGKAKNLKRRVSSYFNKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ +PR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 79  TEEDALLLENNLIKKYRPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRKIIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G+ S + 
Sbjct: 138 YSHIPSMNALLDLIKHLYPLRTCSLNLSPENINAGKFNVCLEYHIKNCAGPCIGKQSLDD 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    ++  + + M +      +E A   +++   + + +  ++ + 
Sbjct: 198 YLKNIGEIKEILKGNTQEIQRHLFQQMQELATDMKFEEAQKVKEKYMLIENYRAKSEVVS 257

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++  +       A +       G      TF  K     T  ++L   + +  
Sbjct: 258 NILHNIDVFSIEEDSDEKSAFVNYLHITNGAINQAFTFEYKKRLNETKEELLELGIIEMR 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  L            V  T+P++G+K+K+++ +++N  +    
Sbjct: 318 ERYKSLSREIIVPFEVDMEL----------KDVVFTIPQRGDKKKLLDLSILNVKQYKAD 367

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           ++        E  +  ++K+   +  L  +P +IE +DNS+I G   V   VV  +    
Sbjct: 368 RMKQAEKLNPEQRNVRLMKEIQDELHLDRLPMQIECFDNSNIQGSDPVAACVVFKKAKPS 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V   DD A M+ V++RR+ + I+                   PD++I
Sbjct: 428 KQDYRKYNIKT--VVGADDYASMKEVVKRRYQRAIEEN--------------APLPDLLI 471

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+SA + VL +LN+   I I  +AK  K     E  +    + + L    P+  
Sbjct: 472 TDGGKGQMSAVKEVLDELNL--NIPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNTPLFR 528

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAIT HR +R K    S LDEI GIG   K  LL+ F +VK I  +S E
Sbjct: 529 LLTQIQDEVHRFAITFHRDKRSKRQIASELDEIKGIGEKTKAALLKEFKSVKRIKEASLE 588

Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612
            LA + G  +  A  I  +F + TS
Sbjct: 589 ALAKVTG--EAKAKVIKEYFRQATS 611


>gi|21282758|ref|NP_645846.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485984|ref|YP_043205.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208216|ref|ZP_06924646.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300912293|ref|ZP_07129736.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|24212605|sp|Q8NX55|UVRC_STAAW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56749719|sp|Q6GA68|UVRC_STAAS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|21204196|dbj|BAB94894.1| excinuclease ABC subunit C [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244427|emb|CAG42855.1| putative excinuclease ABC subunit C [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|296886955|gb|EFH25858.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886539|gb|EFK81741.1| excision endonuclease subunit UvrC [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 593

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 284/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+ +++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|258423811|ref|ZP_05686697.1| excinuclease ABC, C subunit [Staphylococcus aureus A9635]
 gi|257846043|gb|EEV70071.1| excinuclease ABC, C subunit [Staphylococcus aureus A9635]
          Length = 593

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 179/613 (29%), Positives = 286/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I +  F VT +
Sbjct: 15  VPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRHFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           E   FL+G +  + + +   M  A+   D+E A  +RD +  + ++ N    +       
Sbjct: 189 EITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + +    ++  +  +   K       I  P +G K+++++ A  NA  S   K       
Sbjct: 309 VHVPRNLDKEMIQSVVDTK-------IVQPARGPKKEMVDLAAHNAKVSLNNKFELISRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+S+++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              V   +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLQNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   ++ GI 
Sbjct: 522 HRFAITFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNL-GIP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  ++   HK
Sbjct: 581 ENVAKNLHEQLHK 593


>gi|126662636|ref|ZP_01733635.1| excinuclease ABC, C subunit [Flavobacteria bacterium BAL38]
 gi|126626015|gb|EAZ96704.1| excinuclease ABC, C subunit [Flavobacteria bacterium BAL38]
          Length = 605

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 181/623 (29%), Positives = 304/623 (48%), Gaps = 46/623 (7%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P+ PGVYQ  D  G++LYVGKA NL+KR++SY   N+  ++ + ++ +I  I+ 
Sbjct: 7   LQIQTLPDNPGVYQYYDKEGKILYVGKAKNLKKRVQSYFTKNHDNYKTSVLVKKIVTIKH 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+L+PR+N+LLRDDK++P+I I    + P ++  R        
Sbjct: 67  IVVPTETDALLLENNLIKKLQPRYNVLLRDDKTYPWICI-KNERFPRIFSTRKMIKDGSE 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S   V   ++ ++  + LR+C   + +      + + CL + I  C GPC    
Sbjct: 126 YFGPYTSFKTVHTILDLIKELYPLRTCNYDLSKPNIDFGKFKVCLEYHIGNCKGPCEDYE 185

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S+E Y   V + ++ L G      +   R M    ++  +E A   ++++  L + Q+ +
Sbjct: 186 SAENYQNQVEKIRQILKGNFKESLKDFKRLMTDLAMEMKFEEAQKIKEKIEVLENYQSRS 245

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D FS+  ++ +A +       G    + T  LK   + TN ++L   + +
Sbjct: 246 TILNPKISNLDVFSIISDETMAYVNFLQISHGAIVRSHTLELKKKLDETNEELLELAVVE 305

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                      ++           I         +K+TVP+ G+K++I+E +  NA    
Sbjct: 306 LRERFHLNAREIVVPFP-------IDLGDPEVSGIKVTVPQLGDKKQILELSERNAKYYR 358

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
             +L        E     I+    K   L   P+ IE +DNS+I G + V   VV  +  
Sbjct: 359 LDQLKQIQIVDPERHTNRIMAQMQKDLRLSVEPRHIECFDNSNIQGTNPVAACVVFKDGK 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR FN+    V+  +D A M  V+ RR+ +++   + L              P +
Sbjct: 419 PSKKDYRHFNIKT--VEGPNDFASMEEVVYRRYKRMLDENQPL--------------PQL 462

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +I+DGGKGQLS+A   +  L +  +I II IAK  +     E F+      L L+ +   
Sbjct: 463 IIIDGGKGQLSSALKSIDDLGLRGKIAIIGIAKRLE-----ELFYPGDSAPLYLDKKSET 517

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ LR+EAHRF IT HR +R K+   + L+ I GIG      L++ F +VK +  + 
Sbjct: 518 LKVIQFLRNEAHRFGITHHRDKRSKSALTNSLESIPGIGEKTMITLMKHFKSVKRLQIAD 577

Query: 586 PETLASIEGISKKIACKIYNHFH 608
            + ++ + G+SK  A KI + + 
Sbjct: 578 EKAISEVVGLSK--AKKISDFYK 598


>gi|224369428|ref|YP_002603592.1| excinuclease ABC subunit C [Desulfobacterium autotrophicum HRM2]
 gi|259710337|sp|C0QET6|UVRC_DESAH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|223692145|gb|ACN15428.1| UvrC [Desulfobacterium autotrophicum HRM2]
          Length = 606

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 201/612 (32%), Positives = 307/612 (50%), Gaps = 28/612 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTV 62
           +  P+ PGVY M D  G ++YVGKA NL+KR+ SY      H  +   ++ ++ +    V
Sbjct: 10  QSAPQNPGVYLMKDKRGTIIYVGKALNLKKRLASYFARETGHDMKTGVLLKKVVDFDLIV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE+ +IK+  PR+N++L+D KS+P + I      PAL   R        YF
Sbjct: 70  TATEHEALILESTLIKKHSPRYNVILKDGKSYPCLRIDTSKPFPALEVVRKIGDDNAVYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP++SV +V  TI  + + F LR C D  F +RTRPCL +QI  C G C   +S ++Y  
Sbjct: 130 GPYSSVQSVRSTIKQVNKIFKLRKCRDVQFANRTRPCLNYQINACLGACCNRVSRQEYAR 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239
            V +   FL G   +L  ++   M      E +E A   RD + A+         +    
Sbjct: 190 VVGDVILFLKGRAPDLINRLKFEMQTEADLEHFERAAQIRDTILAIQTTLERQVVVSTDR 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-P 298
              D  +   N   A +   F   G   G+  +   T   S   +IL  F+R +Y     
Sbjct: 250 TDRDVIACAINGEKAVVTILFVRSGNLVGSRNYPFDTGL-SGVPEILDAFVRHYYERSLF 308

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  IL++E+ E   L++    ++ G +V + VP++G+KR+++E AL+NA +   + LS 
Sbjct: 309 IPGQILIAEKIENHGLVQDLLIEKRGKRVSLVVPERGDKRRLVEMALVNAQKELEKNLSI 368

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L        +   P+RIE +DNS++ G   V  MVV  +    K++YRKF + 
Sbjct: 369 QNEAWETLTALQTILGMSVYPRRIECFDNSNMAGTDPVSSMVVFVDGLACKSEYRKFIIR 428

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               K  DD A M  VL RR S                  +    PD++++DGGKGQLS 
Sbjct: 429 DA--KENDDYACMTEVLTRRLS-----------------STEAPLPDLLVVDGGKGQLSM 469

Query: 479 AQGVLKKLNVENRITIISIAKGPKR--SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           A  VLK L +ENR  +  +AK   +      + +   +   +        LY +QRLRDE
Sbjct: 470 AVAVLKSLGLENRFQVAGLAKKDAKLGEVYDKIYLPGRANPVNTRGALKALYLVQRLRDE 529

Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFAIT  RKRR K A  S LD + GIG  RK++L+ ++  +  + +++ E LAS+ G+
Sbjct: 530 AHRFAITFQRKRRSKRAGTSVLDAVPGIGKKRKQVLMTTYKGISRMGQATVEELASLPGM 589

Query: 596 SKKIACKIYNHF 607
           +   A ++ +  
Sbjct: 590 TLAAAQQVKSAL 601


>gi|224536938|ref|ZP_03677477.1| hypothetical protein BACCELL_01814 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521425|gb|EEF90530.1| hypothetical protein BACCELL_01814 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 608

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 174/621 (28%), Positives = 308/621 (49%), Gaps = 49/621 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 19  NLPDSPGIYQYLNTEGVIIYVGKAKNLKRRVSSYFNKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 79  SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFKTRKIIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ V ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G+ S + 
Sbjct: 138 YSHVPSMNALLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCVGKQSLDD 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           YM+ + E K+ L G    ++  + + M +   +  +E A   + R   + + +  ++ + 
Sbjct: 198 YMKNIGEIKEILKGNTQEIQRMLFQQMQELAAEMKFEEAQKVKSRYMLIENYRAKSEVVS 257

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++  +       A I       G      TF  K     T  +++   + +  
Sbjct: 258 NVLHNIDVFSIEEDSDGKSAFINYLHITNGAINQAFTFEYKKRLNETKEELIQLGIIEMR 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  L            V  T+P++G+K+K+++ +++N  +    
Sbjct: 318 ERYKSLSREIIVPFEVDMEL----------KDVIFTIPQRGDKKKLLDLSILNVKQYKAD 367

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           ++        E     ++K+  ++  L H+P +IE +DNS+I G   V   VV  +    
Sbjct: 368 RMKQAEKLNPEQRSVRLMKEIQEELHLEHLPIQIECFDNSNIQGSDPVAACVVFKKAKPS 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V   DD A M+ V+ RR+ + I+ +               + PD++I
Sbjct: 428 KQDYRKYNIKT--VVGADDYASMKEVVRRRYQRAIEEK--------------ATLPDLLI 471

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+ A + VL +LN+   I I  +AK  K     E  +    + + L    P+  
Sbjct: 472 TDGGKGQMGAVKEVLDELNL--NIPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNTPLFR 528

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAIT HR++R K    S LDEI GIG   K  LL+ F +VK I  +S E
Sbjct: 529 LLTQIQDEVHRFAITFHREKRSKRQIASELDEIKGIGEKTKAALLKEFKSVKRIKEASLE 588

Query: 588 TLASIEGISKKIACKIYNHFH 608
            L  +  I +  A  I  +F 
Sbjct: 589 ALTKV--IGEAKAKVIEEYFR 607


>gi|119367854|sp|Q3AXU8|UVRC_SYNS9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 661

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/632 (29%), Positives = 303/632 (47%), Gaps = 29/632 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            + +P  PG Y M D   R+LYVGK+  L+ R++SY  S +  + RI  M  Q+  I F 
Sbjct: 21  LKDIPAEPGCYLMRDGDDRILYVGKSKTLRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 80

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT +E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 81  VTDSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSESYPRIFITRRRRFRSPLD 140

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R F LR     + + RT  CL + I RC G C  +ISS+ 
Sbjct: 141 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHQDRT--CLNYSIGRCPGVCQEKISSDD 198

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +      G +  L+  +   M++   + DYESA   RD+L  L  +        
Sbjct: 199 YHQTLRKVAMVFQGRSDELQNLLQEQMHKYADRTDYESAARVRDQLQGLDQLTADQKMSL 258

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  ++ LA +Q      G+  G   +     +  +   IL   + + Y+
Sbjct: 259 PDSSVSRDVLALACDERLAAVQLFQMRAGKLVGRLGYTAD-AAGLSPGLILQRVIEEHYS 317

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+     + SLLE    +Q   KV+I  P++ +K  +IE    NA    
Sbjct: 318 QVDAVEVPPQLLVQHPLPQQSLLEEWLTEQRERKVQIHCPQRRQKADLIELVQRNAEFEL 377

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +    +    +  +D  +   LP  P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 378 LRAKQGQEQQALSTEDLAQLLDLPLPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 437

Query: 413 RKFNLHPNDV---KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE-------YSFPS 462
           RK+ +  + +    + D  AM  ++  R         + L+    +Q+            
Sbjct: 438 RKYKIQSSSIRAGHSDDFMAMAEIMRRRFRRWARAKADGLDLGALRQKGGSALQTDGLND 497

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPD+V++DGGKGQLSA    L++LN+ + + + S+AK  +     E F   + + L    
Sbjct: 498 WPDLVMIDGGKGQLSAVMEALRELNLHDDLNVCSLAKQRE-----EVFLPGESQPLESEA 552

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA++ HR++R  +   S L +I G+G  R R LL  F ++  I
Sbjct: 553 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGAKRVRDLLSHFHSIDAI 612

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
             +S +TL+   G+   +A  I+N FH    +
Sbjct: 613 QLASVDTLSKAPGVGPVLAQDIFNFFHPTDEN 644


>gi|124515718|gb|EAY57227.1| Excinuclease ABC, C subunit (UvrC) [Leptospirillum rubarum]
          Length = 629

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 183/624 (29%), Positives = 299/624 (47%), Gaps = 34/624 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
            +PE PGVY M    G VLYVGK+ +L+ R++SY       + RI  ++S++ ++    T
Sbjct: 23  TLPEEPGVYLMKSETGEVLYVGKSRSLKDRVRSYFQETRVRSTRIALLVSRVRDLEIIRT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE++AL+LE  +IKR +PR+N+LLRDDK++PY+  +     P L   R        YFG
Sbjct: 83  KTELDALILENTLIKRYRPRYNVLLRDDKTYPYLKFSWNDTYPRLTVTRRVRNDGSLYFG 142

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182
           P+ +  A++ T+  ++RTF L +C   + +    RPC+ +QIKRC GPC   +++E    
Sbjct: 143 PYPNPSAMKDTLRLIRRTFPLATCTIPLDKPTLERPCVEYQIKRCLGPCVEGLTTETEYR 202

Query: 183 FVHEAKK-FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---I 238
            V    + FL G +++L   +   M       ++E A   RDR   +  +   +      
Sbjct: 203 QVAMGVRLFLQGKSNDLLYLLENEMKARAKNLEFEKAAAVRDRYRNVLQVLEKHTVSFPF 262

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           ++ +D   L  +   A +       G   G     LK   E+++ ++L  FL QFY  + 
Sbjct: 263 HHPIDGLYLARSGTTAVMLVMHIRNGLLIGKEEVELKNTEEASDEELLVAFLEQFYGKES 322

Query: 299 --CPENILLSEEAEETSLL--EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
              P  ILL     E  L+       K+    V+I  PK+G+K+ I++    NA  +   
Sbjct: 323 AFLPGEILLPVSLPEEDLMTLSWMSEKKGEDPVRIISPKRGDKKMILDLVRENAEEALNA 382

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           +    ++   +L +          P+ +   D S+      V  +V   +    K+ YRK
Sbjct: 383 REKRSLNSTEVLDEARSLLKRDRPPRLLCCVDISNTGDLLPVASLVTFQDGKPEKSLYRK 442

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +     K QDD  M+  V+ER++                        PD++++DGG  
Sbjct: 443 FRIR--YEKGQDDFKMLSEVMERQYR-------------------ENPLPDLLVIDGGPL 481

Query: 475 QLSAAQGVLKKLNVEN-RITIISIAKGPKRSAGME-KFFVKKGEALVLNMRDPILYFIQR 532
           QL A    L+++  ++ R  ++S+AK        E  FF  +   L+L    P+ + + R
Sbjct: 482 QLDACVRTLEEMGHDDARRRVVSLAKERTNKNKSERIFFPGQDTPLILPGHHPVTHLLVR 541

Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFAI  HR  R++   +S L  I G+GP R++ LLQSFG+VK +  ++ E +  
Sbjct: 542 LRDEAHRFAIKYHRTLREEYLTHSRLLHIPGVGPAREKKLLQSFGSVKNLMEATIEEIVQ 601

Query: 592 IEGISKKIACKIYNHFHKNTSHTP 615
             G+S  +A  IY+         P
Sbjct: 602 NAGLSVALATSIYHSLRDKQDAPP 625


>gi|298207519|ref|YP_003715698.1| excinuclease ABC, C subunit [Croceibacter atlanticus HTCC2559]
 gi|83850155|gb|EAP88023.1| excinuclease ABC, C subunit [Croceibacter atlanticus HTCC2559]
          Length = 598

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 181/626 (28%), Positives = 304/626 (48%), Gaps = 52/626 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVYQ  D   ++LYVGKA NL+KR+ SY    + +HRI  M+ +I NI+ 
Sbjct: 8   IQVKTLPSSPGVYQYFDKDDKILYVGKAKNLKKRVNSYFTKKHDSHRIGVMVKKIKNIKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +E +ALLLE N+IK+LKPRFN++LRDDK++P++ I  K + P ++  R        
Sbjct: 68  IVVNSETDALLLENNLIKKLKPRFNVMLRDDKTYPWLCI-KKERFPRVFPTRRVIKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           Y+GPF S+  V   ++ ++  + LR+C      + +   + + CL + +  C GPC G  
Sbjct: 127 YYGPFTSMKTVHTLLDLIKGLYQLRTCKYDLAEEKIDAGKYKVCLEYHLGNCQGPCEGYQ 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           + E+Y   +   ++ + G   +   K    M     + ++E A   ++++  L   Q+ +
Sbjct: 187 TEEEYHSNIDHIRQIVKGNFKDSLIKFKDQMKGHAERMEFEDAQRIKEKIQVLEKYQSKS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  N +D FS+  ++    +       G    + T  LK   +  + ++L   + +
Sbjct: 247 TVVNPKINNVDVFSIVSDEGFGYVNFLQLSHGSIIRSHTIELKKKLDEGDQELLELGIIE 306

Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                    + I +    E                +K+TVPK G+K+ I++ +  NA   
Sbjct: 307 IRQRFNSQSKEIYVPMHVEVGE------------DLKVTVPKLGDKKSIVDLSTRNAKYF 354

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
             ++         +   + I+    +   L   P+ IE +DNS+I G + V   VV  + 
Sbjct: 355 RQERFKQMKIVDPDRHVKRIMAQMKEDLRLNEEPRHIECFDNSNIQGTNPVAACVVFKDG 414

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K++YRKFN+    V+  DD A M  V+ RR+ +L+  ++ L              P 
Sbjct: 415 KPSKSEYRKFNIKT--VEGPDDFASMEEVVFRRYRRLLNEDQPL--------------PQ 458

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQLS+A   L  L +  +I I+ IAK  +     E F+      L L+ +  
Sbjct: 459 LIIIDGGKGQLSSAVKALDDLGLRGKIAIVGIAKRLE-----EIFYPTDKYPLYLDKKSE 513

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ LR+EAHRF IT HR++R   A  + L+ I GIG      LL+ F ++  I  +
Sbjct: 514 SLKIIQHLRNEAHRFGITFHRQKRSSAALGTELENITGIGEKTAVELLKHFRSISKIKSA 573

Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610
             E L  + G++K  A  +Y  ++K 
Sbjct: 574 KREDLEQVVGVAK--ASLVYEFYNKE 597


>gi|224023516|ref|ZP_03641882.1| hypothetical protein BACCOPRO_00218 [Bacteroides coprophilus DSM
           18228]
 gi|224016738|gb|EEF74750.1| hypothetical protein BACCOPRO_00218 [Bacteroides coprophilus DSM
           18228]
          Length = 606

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 173/620 (27%), Positives = 316/620 (50%), Gaps = 48/620 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ LD  G ++YVGKA NL++R+ SY    + + +   ++++I +IR+ V  
Sbjct: 19  NLPETPGIYQYLDSEGTIIYVGKAKNLKRRVYSYFAKEHESRKTRVLVTRIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ +PR+N+LL+DDKS+P I +++    P ++K R       +YFGP
Sbjct: 79  TEEDALLLENNLIKKYRPRYNVLLKDDKSYPSICVSN-EYFPRVFKTRKLIRDGSTYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ V ++   +  ++R + LR+C      +++   + + CL + IK C GPC G  S ++
Sbjct: 138 YSHVPSMMAMLELIKRLYPLRTCNLALTPENITAGKFKVCLEYHIKNCKGPCIGAQSHDE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           YM+ + E ++ L G   ++   +   M +   +  +E A   +++   + + ++ ++   
Sbjct: 198 YMKSIAEIREILKGNTQSISNALMEEMQKLAEELRFEEAQKVKEKYELIENYRSKSEVVS 257

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            + + +D FS+  +++ A I       G      TF  K     +  ++L   + +    
Sbjct: 258 SVIHNIDVFSIETDESSAYINYLHITNGCVNQAFTFEYKMRVNESKEELLQLGIVEMRER 317

Query: 297 KPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                + I++  E +                V  TVP++G+K+ ++E +L+N  +    +
Sbjct: 318 YQSQSKEIIVPFELDMEM-----------NGVTFTVPQRGDKKHLLELSLLNVKQYKVDR 366

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+   +  L  +P  IE +DNS+I G  AV   VV  +    K
Sbjct: 367 LKQAEKLNPEQRSARLMKEIQTQLGLDRLPVHIECFDNSNIQGSDAVAACVVFRKTKPSK 426

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            +YRK+N+    V   DD A M+ V+ RR++++++ +  L              PDV++ 
Sbjct: 427 KEYRKYNIKT--VTGPDDYASMQEVVRRRYTRILEEQGEL--------------PDVILT 470

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I+ +AK   R    E  F      + +    P+ + 
Sbjct: 471 DGGKGQMEVVRQVIED-ELHLNIPIVGLAK-DNRHRTSEVLFGFPPLTIGIKQGTPLFHL 528

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +++++DE HRFAIT HR +R K+   S LD I GIG  RK  LL++F +V  I ++S + 
Sbjct: 529 LEQIQDEVHRFAITFHRDKRSKSQVASALDSIKGIGEKRKSDLLRTFKSVARIRKASLQE 588

Query: 589 LASIEGISKKIACKIYNHFH 608
           +A++  I +  A  +     
Sbjct: 589 IAAV--IGEAAAINVKEALK 606


>gi|289551049|ref|YP_003471953.1| Excinuclease ABC subunit C [Staphylococcus lugdunensis HKU09-01]
 gi|289180581|gb|ADC87826.1| Excinuclease ABC subunit C [Staphylococcus lugdunensis HKU09-01]
          Length = 592

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 171/613 (27%), Positives = 291/613 (47%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I +  + VT +
Sbjct: 14  VPIEPGCYLMKDRQQQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRDFEYIVTSS 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 73  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKKGTGKYFGPY 131

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C         + CL + I +C GPC  ++  ++Y +   
Sbjct: 132 PNAYSAQETKKLLDRIYPFRKCDTMP----DKLCLYYHIGQCLGPCVYDVDQQQYAQMTK 187

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  + + + + M  A+ K D+E A  +RD +  + ++      + +     
Sbjct: 188 EISDFLNGEDKTILQNLEQRMMAASEKLDFERAKEYRDLIQHIHNLTKKQKIMSSDNTIR 247

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  + +K   C+Q  F   G         +                         P+ 
Sbjct: 248 DVFGYHVSKGWMCVQVFFIRQGNMIQRDATMIPIQQTEEEEFYTFIGQFYSLNQHILPKE 307

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + + +  +   +  +   K       I  P +G K+++++ A  NA  +   K       
Sbjct: 308 VHIPKHLDAKLIHSVVDTK-------IVQPARGAKKEMVDLANHNAEVALDNKFELIARD 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 361 ESRTVKAIEELGERMGI-QSPIRIEAFDNSNIQGVDPVSAMVSFVDGKPDKRGYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG +S 
Sbjct: 420 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMSG 463

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            + VL+ +L ++  I I  + K  K     E  +  + E + +       Y +QR++DE 
Sbjct: 464 VKDVLENELGLD--IPIAGLRKNDKHQTS-ELLYGPEAEVVPMKKNSQAFYLLQRIQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD ++GIG  RK  LL++FG++K +  ++   L +  G+ 
Sbjct: 521 HRFAITFHRQTRQKQGMRSILDTVDGIGSKRKTKLLRTFGSIKKMKEATLPELQN-CGLP 579

Query: 597 KKIACKIYNHFHK 609
           +K+A  +    + 
Sbjct: 580 EKVAKSLKEALNN 592


>gi|317474646|ref|ZP_07933920.1| excinuclease ABC [Bacteroides eggerthii 1_2_48FAA]
 gi|316909327|gb|EFV31007.1| excinuclease ABC [Bacteroides eggerthii 1_2_48FAA]
          Length = 606

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 181/620 (29%), Positives = 308/620 (49%), Gaps = 49/620 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVYQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 16  NLPESPGVYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 76  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRVIRNGSSYYGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G+ S E+
Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCVGKQSQEE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y+  + E K+ L G    +   + R M     +  +E A   +++   L + ++ ++ + 
Sbjct: 195 YLNNIAEIKEILKGNTQEVGRMLYRQMQDLAAEMKFEEAQKIKEKYLLLENYRSKSEVVS 254

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++  +       A I       G      TF  K     T  ++LS  + +  
Sbjct: 255 NILHNIDVFSIEEDTDEKSAFINYLHITNGAINQAFTFEYKKRLNETKEELLSLGIIEMR 314

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  L            V  T+P++G+K+K++E +++N  +    
Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     +LK+   +  L  +P RIE +DNS+I G   V   VV  +    
Sbjct: 365 RLKQTEKLNPEQRTVRLLKEIQGELHLDRLPMRIECFDNSNIQGSDPVAACVVFIKGKPS 424

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V+  DD A M+ V++RR+ + I+                   PD++I
Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEN--------------SPLPDLLI 468

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+SA + ++ +LN++  I I  +AK  K     E  +    + + L    P+  
Sbjct: 469 TDGGKGQMSAVKEIIDELNLD--IPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNSPLFR 525

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAIT HR +R K    S LDEI GIG   K  LL+ F +VK I  +S E
Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQVASALDEIKGIGEKTKNTLLKEFKSVKRIKEASTE 585

Query: 588 TLASIEGISKKIACKIYNHF 607
            +  + G  +  A  I  HF
Sbjct: 586 DIIKVVG--EAKAKIIKEHF 603


>gi|312865325|ref|ZP_07725553.1| excinuclease ABC, C subunit [Streptococcus downei F0415]
 gi|311099436|gb|EFQ57652.1| excinuclease ABC, C subunit [Streptococcus downei F0415]
          Length = 598

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 168/620 (27%), Positives = 296/620 (47%), Gaps = 43/620 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY H ++ T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYIHKDKNGTIIYVGKAKNLKNRVRSYFHGSHDT-KTEMLVSEIADFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I++  P++NI L+DDKS+PYI IT+    P L   R      G Y
Sbjct: 67  VTGSNTEALLLEINLIQKNMPKYNIRLKDDKSYPYIKITN-EVYPRLMITRQVHRKDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+    A  +    L R F  + C +       + C  + + +C+           + 
Sbjct: 126 FGPYPDSGAATEIKRLLDRIFPFKKCTNP----ANKVCFYYHLGQCNAHTICHTDQTYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
               + K FL+G ++ + E+I + M +A+   ++E A  +RD L A+S ++     +   
Sbjct: 182 GLKEDVKNFLNGKDNKIVEQIRQKMLKASELMEFERAAEYRDLLEAISKLRTKQRIMNQD 241

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           M   D F  Y +K   C+Q  F   G+            +E     +         +   
Sbjct: 242 MQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNIFPYYNEPEEDFLTYLGQFYQESKHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + ++ ++     +   K          P++GEK++++  A  NA     +    
Sbjct: 302 LPKEVFIPQDIDDQLAKAVVKTKVLK-------PQRGEKKQLVNLATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   +  +++  +   +P    RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDIKKTKGAIENLGQLLNIPAPR-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR V+ RR+S+++++                + PD++++DGG+G
Sbjct: 414 FKIKT--VIGPDDYASMREVIYRRYSRVMRDG--------------LTPPDLIVIDGGQG 457

Query: 475 QLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           Q++ A+  +  +L ++  I I  + K  K     E  F +  E + L       + +QR+
Sbjct: 458 QVNIAKDVIQNRLGLD--IPIAGLQKNDKHQT-HELLFGEPLEVVDLPRNSQEFFLLQRV 514

Query: 534 RDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           +DE HRFAIT HR+ R K ++S  LD + G+GP RK+LLL+ F ++  I ++  + + + 
Sbjct: 515 QDEVHRFAITFHRQVRSKNSFSSKLDGVPGLGPKRKQLLLKHFRSLTKIQQADVDDIVN- 573

Query: 593 EGISKKIACKIYNHFHKNTS 612
            G+ + +A  +     +  +
Sbjct: 574 CGVPRNVAEDLKARLSEMEN 593


>gi|315658545|ref|ZP_07911417.1| excision endonuclease subunit UvrC [Staphylococcus lugdunensis
           M23590]
 gi|315496874|gb|EFU85197.1| excision endonuclease subunit UvrC [Staphylococcus lugdunensis
           M23590]
          Length = 592

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 172/613 (28%), Positives = 291/613 (47%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I +  + VT +
Sbjct: 14  VPIEPGCYLMKDRQQQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRDFEYIVTSS 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 73  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKKGTGKYFGPY 131

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C         + CL + I +C GPC  ++  ++Y +   
Sbjct: 132 PNAYSAQETKKLLDRIYPFRKCDTMP----DKLCLYYHIGQCLGPCVYDVDQQQYAQMTK 187

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  + + + + M  A+ K D+E A  +RD L  + ++      + +     
Sbjct: 188 EISDFLNGEDKTILQNLEQRMMAASEKLDFERAKEYRDLLQHIHNLTKKQKIMSSDNTIR 247

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  + +K   C+Q  F   G         +                         P+ 
Sbjct: 248 DVFGYHVSKGWMCVQVFFIRQGNMIQRDATMIPIQQTEEEEFYTFIGQFYSLNQHILPKE 307

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + + +  +   +  +   K       I  P +G K+++++ A  NA  +   K       
Sbjct: 308 VHIPKHLDAKLIHSVVDTK-------IVQPARGAKKEMVDLANHNAEVALDNKFELIARD 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 361 ESRTVKAIEELGERMGI-QSPIRIEAFDNSNIQGVDPVSAMVSFVDGKPDKRGYRKYKIK 419

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG +S 
Sbjct: 420 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMSG 463

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            + VL+ +L ++  I I  + K  K     E  +  + E + +       Y +QR++DE 
Sbjct: 464 VKDVLENELGID--IPIAGLRKNDKHQTS-ELLYGPEAEVVPMKKNSQAFYLLQRIQDEV 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD ++GIG  RK  LL++FG++K +  ++   L +  G+ 
Sbjct: 521 HRFAITFHRQTRQKQGMRSILDTVDGIGSKRKTKLLRTFGSIKKMKEATLPELQN-CGLP 579

Query: 597 KKIACKIYNHFHK 609
           +K+A  +    + 
Sbjct: 580 EKVAKSLKEALNN 592


>gi|239636358|ref|ZP_04677360.1| excinuclease ABC subunit C [Staphylococcus warneri L37603]
 gi|239597713|gb|EEQ80208.1| excinuclease ABC subunit C [Staphylococcus warneri L37603]
          Length = 594

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 177/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++S+I N  F VT +
Sbjct: 15  VPLEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLIVTRTVKKGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++  +KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRK----CDKMPDKLCLYYHIGQCMGPCVYDVDLDKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL G +  +   +   M +A+   D+E A  +RD +  + ++      +       
Sbjct: 189 EISDFLHGEDKTILNHLQERMEKASESLDFERAKEYRDLIQHIHNLTKKQKIMSTDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G      T  +                         P+ 
Sbjct: 249 DVFGYSVSKGWMCIQVFFIRQGNMIKRDTTMIPIQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           + + +  ++  +  +   K       I  P +G K+++I+ A  NA  S   K       
Sbjct: 309 VHVPKHLDKDIIQSVVDTK-------IVQPSRGAKKEMIDLANHNAEVSLNNKFELIARD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPEKKGYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------TPLPDLIIVDGGKGHMNG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK  LL++FG++K +  +S E L    G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGAKRKTKLLRTFGSIKKMKEASLEDLKK-SGLP 580

Query: 597 KKIACKIYNHFHK 609
           + +A  + +    
Sbjct: 581 ENVAKNLQHALQN 593


>gi|218131737|ref|ZP_03460541.1| hypothetical protein BACEGG_03358 [Bacteroides eggerthii DSM 20697]
 gi|217986040|gb|EEC52379.1| hypothetical protein BACEGG_03358 [Bacteroides eggerthii DSM 20697]
          Length = 606

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 181/620 (29%), Positives = 308/620 (49%), Gaps = 49/620 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVYQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 16  NLPESPGVYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 76  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRVIRNGSSYYGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G+ S E+
Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCNLNLSPENIRTGKFNVCLEYHIKNCAGPCVGKQSQEE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y+  + E K+ L G    +   + R M     +  +E A   +++   L + ++ ++ + 
Sbjct: 195 YLNNIAEIKEILKGNTQEVGRMLYRQMQDLAAEMKFEEAQKIKEKYLLLENYRSKSEVVS 254

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++  +       A I       G      TF  K     T  ++LS  + +  
Sbjct: 255 NILHNIDVFSIEEDTDEKSAFINYLHITNGAINQAFTFEYKKRLNETKEELLSLGIIEMR 314

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  L            V  T+P++G+K+K++E +++N  +    
Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     +LK+   +  L  +P RIE +DNS+I G   V   VV  +    
Sbjct: 365 RLKQTEKLNPEQRTVRLLKEIQGELHLDRLPMRIECFDNSNIQGSDPVAACVVFIKGKPS 424

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V+  DD A M+ V++RR+ + I+                   PD++I
Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEN--------------SPLPDLLI 468

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+SA + ++ +LN++  I I  +AK  K     E  +    + + L    P+  
Sbjct: 469 TDGGKGQMSAVKEIIDELNLD--IPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNSPLFR 525

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAIT HR +R K    S LDEI GIG   K  LL+ F +VK I  +S E
Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQVASALDEIKGIGEKTKNTLLKEFKSVKRIKEASTE 585

Query: 588 TLASIEGISKKIACKIYNHF 607
            +  + G  +  A  I  HF
Sbjct: 586 DIIKVVG--EAKAKIIKEHF 603


>gi|261867897|ref|YP_003255819.1| excinuclease ABC subunit C [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413229|gb|ACX82600.1| excinuclease ABC, C subunit [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 609

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 206/617 (33%), Positives = 339/617 (54%), Gaps = 32/617 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D    V+YVGKA +L+KR+ SY      + +   +++ I +I  T+T 
Sbjct: 11  NVPHLPGVYRMYDDKSTVIYVGKAKDLKKRLSSYFRKQLSSKKTEALVASIQHIETTITT 70

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N IK  +PR+N+LLRDDKS+PYIL+T K   P +  +R S  IQG YFGP
Sbjct: 71  SETEALLLEHNYIKTYQPRYNVLLRDDKSYPYILLT-KETHPRITAYRGSKKIQGEYFGP 129

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEF 183
           + +  AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RC  PC    ++ E Y + 
Sbjct: 130 YPNAGAVRETLSLLQKLFPIRQCENSVYNNRSRPCLQYQIGRCLAPCVKGYVTDEAYAQQ 189

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           V+ A+ FL G +  + + + + M QA+ + ++E A   RD++ A+  +        +R D
Sbjct: 190 VNFARLFLQGKDQQVLDHLVKQMEQASQQLNFEEAARIRDQIQAVRAVIEKQFVANDRHD 249

Query: 244 C---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TD 296
                ++ +   +AC+Q  F   G+  G  ++F K  S +  A++   F+ QFY      
Sbjct: 250 DIDIIAIAYQLGVACVQVLFIRQGKILGNRSYFPKVPSNTNLAELTETFVGQFYLQAHQG 309

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  I++ ++ +E   LE     Q G KV I    +G+K K ++ A +NA  +   KL
Sbjct: 310 RTIPNTIIVDQKLDEKVDLETLLSDQAGRKVSIQDHAKGDKSKYLQLAQMNAKAALVTKL 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                         +  ++  I  R+E +D SH MG   +   VV  ++G +K+ YR+FN
Sbjct: 370 KQSTLQHDRYVALQELLSIAAIK-RMECFDISHTMGEQTIASCVVFNQDGPLKSDYRRFN 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  + +   DD A M   L +R+ + +++++                PD++ +DGGKGQL
Sbjct: 429 I--SGITKGDDYAAMEQALLKRYDKDLEDDK---------------IPDIIFIDGGKGQL 471

Query: 477 SAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQR 532
           + A  V + LNV   +NR  +I +AKG  R AG+E   + K  + L L+     L+ I+ 
Sbjct: 472 NRALQVFENLNVKWNKNRPHLIGVAKGVDRRAGLETLILSKWDKELHLSADSLALHLIRH 531

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDE+H  AI+ H K+R++    S L+ I G+G  R++ LL+  G ++ +  ++ + +AS
Sbjct: 532 IRDESHNHAISGHCKKRQQHFTQSGLESIEGVGAKRRQALLKYLGGLQGVKNATLDEIAS 591

Query: 592 IEGISKKIACKIYNHFH 608
           + GISK +A KI+    
Sbjct: 592 VPGISKALAEKIFETLQ 608


>gi|322435991|ref|YP_004218203.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX9]
 gi|321163718|gb|ADW69423.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX9]
          Length = 662

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/676 (27%), Positives = 322/676 (47%), Gaps = 85/676 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH--RITHMISQINNIR 59
               +P  PG Y   +  G V+YVGKA NL+ R++SY    N  +  +   ++ +  ++ 
Sbjct: 6   KIRTLPTSPGCYLYKNAEGEVIYVGKAKNLRSRVRSYFLEANQRNNQKTGSLMREAVDVD 65

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119
           +     E EAL LE N+IK+ KPRFNILLRDDK++PYI IT   + P ++  R      G
Sbjct: 66  YITVDNEREALALENNLIKQRKPRFNILLRDDKTYPYIKITLTDRHPKVFVTRRLRKDGG 125

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSE 178
           +YFGP+   +   + ++ + R+F + SC   + R+  R CL + IKRC GPC    ++ E
Sbjct: 126 AYFGPYFPGNLAHRLVDLIHRSFLIPSCKVDLNRYHPRACLQYYIKRCLGPCVEGLVTPE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + + + + FL G    L++++   M +A     +E A   RD+L  +S +Q+     
Sbjct: 186 TYKDTIRDVQLFLDGRTDELEKRLTARMAEAAENMQFELAARLRDQLVTVSQMQDKQRIA 245

Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES--------------- 280
                  D F  ++   +  +       G+      FF +   +                
Sbjct: 246 TTDNEDADVFGFHYENQMLAVNLFHMRGGKIVDRRDFFWEDLPDLAGHFGESLNEGEETE 305

Query: 281 ---------------------------------TNAQILSYFLRQFYTDKP-CPENILLS 306
                                            + A   S  L+Q Y D+   P +I + 
Sbjct: 306 AALEPDTRRSAPEIEEDSTSVQQTPVAELGAVFSPAAFFSALLKQLYLDQSYVPRSIYVP 365

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            +  +  LL     ++  +++++  P++G+KR +++    NA +S+ Q+       + ++
Sbjct: 366 VDFPDRVLLADLLSERAHHRIELAAPQRGDKRSLVDLVCQNAKQSYDQRFRVLQPTKKLI 425

Query: 367 KD-FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
            D       LP  PKRIE +D SHI G   V  MVV  +    K+ YRKF +    V   
Sbjct: 426 ADTLQDILNLPETPKRIECFDISHIQGSETVASMVVWEDGVMKKSDYRKFQIKT--VSGN 483

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD A MR V++RR+ +L+  ++               +P V+++DGG GQLSAA   L++
Sbjct: 484 DDFASMREVIQRRYKRLLDEKK--------------PFPSVILIDGGLGQLSAAYAALEE 529

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           + V  +  + SIAK  +          ++ E +VL+ R P+L+ +Q++RDE+HRFA+  H
Sbjct: 530 IGVTLQ-PLASIAKKEEIIY----VHGQEDEPVVLDRRSPVLHMVQKIRDESHRFAVGYH 584

Query: 546 RKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIA 600
           RKRR+ +   + LD I G+GP  ++ L++ FG+++ I + + E     L ++  +++  A
Sbjct: 585 RKRRQIRDRETELDPIPGVGPRTRQRLIEHFGSIRAIKQ-TAEQNPDALTAV--VNQATA 641

Query: 601 CKIYNHFHKNTSHTPT 616
            KI  +F    +   T
Sbjct: 642 EKIRRYFFPTPAEPET 657


>gi|332653474|ref|ZP_08419219.1| excinuclease ABC subunit C [Ruminococcaceae bacterium D16]
 gi|332518620|gb|EGJ48223.1| excinuclease ABC subunit C [Ruminococcaceae bacterium D16]
          Length = 609

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 176/619 (28%), Positives = 296/619 (47%), Gaps = 28/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
            +  +P  PGVY M D+   V+YVGKA  L+ R+  Y   + +HT +   M+SQI++   
Sbjct: 9   KAHALPLKPGVYIMQDVHSTVIYVGKAKALKNRVSQYFQDSASHTEKTRAMVSQIDHFDV 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +  +E EAL+LE ++IKR +PR+NILL+DDK +PYI ++ K + P        +     
Sbjct: 69  IIADSEFEALVLENSLIKRHQPRYNILLKDDKGYPYIRLS-KEEYPRFSLANRVAEDGAR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+AS  + ++ +++L+    L +C     R   + RPCL F + +C G C  E++ E
Sbjct: 128 YFGPYASRHSTQQIVDALRTALRLPTCRRQFPRDIGKERPCLNFHMGKCDGYCRREMTKE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + +A   L G    +K  +   M QA  +  +E A   RDR+ A+  +      +
Sbjct: 188 RYDQAIAQAVSLLEGKFKEVKADLTAQMEQAAEELRFEKAAQIRDRIKAIQLLGERQKVV 247

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D    +  +  +C     +  G+        ++   E    +ILS  LRQ+Y 
Sbjct: 248 AGSLADTDVTGFFRGEAKSCFVVLHYLDGELAAKDMDLMERPMEEETGEILSALLRQYYA 307

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P  ILL  E ++   L     +Q G +V++  P++G K  +I+ A  NA    T+
Sbjct: 308 GRSRLPRQILLPCELDDQVPLTRMLSEQAGRRVELITPQRGAKMDLIKLANQNAVEEVTR 367

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
             + E     +L+   K   L   P+R E YD S+      V  MVV      +K  YR+
Sbjct: 368 ATTREERQNKLLEALGKMLGLEQAPRRTESYDISNTGADDMVASMVVFENGRPLKRDYRR 427

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    +   DD A M  VL RRF + +  +E            F + PD++++DGG+ 
Sbjct: 428 FKIKD--LTGPDDYASMEQVLTRRFQRYLDGDE-----------KFGTLPDLMLIDGGEN 474

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
            +  A+ VL    ++  I    + K  +            G  + +     +   I +++
Sbjct: 475 HVKIARRVLDDFGLD--IPAFGMVKDDRHRTRA--LVAPDGREIGIQAIPAVFALIGQIQ 530

Query: 535 DEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +E HRFAI  +R++RK +   S LD+I G+G  R+  LL++F +VK I ++  E L  + 
Sbjct: 531 EETHRFAIEFNRQQRKGRVQGSVLDQIPGVGEKRRAQLLKAFKSVKAIRQAPLEELEKV- 589

Query: 594 GISKKIACKIYNHFHKNTS 612
            + K  A  +Y  F +  +
Sbjct: 590 -VPKNTAQAVYQFFRREET 607


>gi|227875543|ref|ZP_03993683.1| excinuclease ABC subunit C [Mobiluncus mulieris ATCC 35243]
 gi|227843879|gb|EEJ54048.1| excinuclease ABC subunit C [Mobiluncus mulieris ATCC 35243]
          Length = 702

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 190/696 (27%), Positives = 308/696 (44%), Gaps = 94/696 (13%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
              ++P  PGVY+  D  GRV+YVGKA NL+ R+ SY         R   M++   ++ +
Sbjct: 8   KPAEIPTAPGVYRWRDAHGRVIYVGKAKNLRNRLTSYFVDPAKLHPRTAKMVATAESVSW 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +EVEAL LE   IK   P+FN++ +DDKS+PY  +T   + P +   R +      
Sbjct: 68  VVVGSEVEALTLEYTWIKEYDPKFNVMFKDDKSYPYFAVTLNQEFPRMGVLRSAHQRGVR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP---CLLFQIKRCSGPCTGEISS 177
           YFGP+ +V A+ +T + L+  F +R+C D VF         CL   I RCS PC G IS+
Sbjct: 128 YFGPYTAVWAIRQTSDLLETVFPVRTCTDGVFARARAAGRACLKGYIGRCSAPCIGRISA 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            ++ E  +    F+SG    L   +   M   +    +E A   RD+L AL  +   N  
Sbjct: 188 AEHRELANRVCDFMSGHEAGLLRDLENQMWAESKAFRFEEAAKKRDQLEALRKVLEKNAV 247

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +     D F+L  ++    +Q  +   G+ RG   +    + +   ++++S+ L Q Y
Sbjct: 248 VMDTDTDADLFALAADELQVSVQVFYVRAGRIRGQRGWISTIEEDVDTSELMSFALEQIY 307

Query: 295 TDKP---------------------------CPENILLSEEAEETSLLEISFFKQYGYKV 327
                                           P+ IL+S    + + LE       G KV
Sbjct: 308 GQVAAKLAQSGGAQLREPSSATDVAHFDTTYIPKQILVSVIPADPASLEAWLSGLRGSKV 367

Query: 328 KITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIE 383
            I  P++G KR+ +E+  +NA        T++ S      + L +  +   +     R+E
Sbjct: 368 TIRRPQRGMKREAVERVELNAVDGLRLYKTRRASDLTQRNLALNELGRALGIDPPL-RVE 426

Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC-AMMRMVLERRFSQL 442
            YD SH  G   VG MVV  +    KN YRKF +  +  +   D    M  VL RRF +L
Sbjct: 427 CYDISHTQGTFQVGSMVVFEDGAPRKNAYRKFTVRGSQGQGAADDTEAMNEVLRRRFERL 486

Query: 443 IKNEENLNFHPK-----------------------------------------------K 455
           I+ E       +                                               +
Sbjct: 487 IQEETPAPHEVEPAVTDRGDPAARYVGESSVAGDVGDAASRGANPNPGEGLSGDPSGEIR 546

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
           +   F   PD+V++DG   Q+ AA+  +    V + I ++ +AK  +     E + V   
Sbjct: 547 EPKRFSYRPDLVVVDGALPQVHAARAAMDAAGVWD-IPVVGLAKRLE-----EVWTVDSD 600

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574
             ++       LY +Q LRDE+HRFAIT HRK+R +    S LD I G+G ++++ LL+ 
Sbjct: 601 FPVIFPRTSTALYLLQYLRDESHRFAITAHRKKRGQAMTRSVLDGIPGLGSVKQKALLKH 660

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           FG+++ I R+S E ++ + G  + +A ++  +  +N
Sbjct: 661 FGSLRQIRRASAEDISKVPGFGRILATQVVKYLQEN 696


>gi|262198238|ref|YP_003269447.1| excinuclease ABC, C subunit [Haliangium ochraceum DSM 14365]
 gi|262081585|gb|ACY17554.1| excinuclease ABC, C subunit [Haliangium ochraceum DSM 14365]
          Length = 689

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 198/632 (31%), Positives = 308/632 (48%), Gaps = 36/632 (5%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH---RITHMISQINNIRF 60
           E++P  PGVY M D +GRV+YVGKA NL+ R++ Y               +   + +I  
Sbjct: 15  ERIPTAPGVYLMKDRSGRVVYVGKAKNLRTRVRQYFRPGADARFFVAAGLLARVLADIDT 74

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V   E EALLLE ++IK+ +PRFNI LRDDK +  + I      P +   R+    Q  
Sbjct: 75  VVVDNEKEALLLENHLIKKHQPRFNINLRDDKQYLVLRIDPNADYPRVEVVRNIRDDQAR 134

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+ S  +  +T+  L R F LR+C D V R RTRPCL +QIKRC GPC   +  + Y
Sbjct: 135 YFGPYHSATSCRETLRLLNRHFQLRTCTDHVLRTRTRPCLQYQIKRCPGPCVYPVERDAY 194

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            E V +   FL+G N  L  ++   M+    +E++E+A   RD + A+       +    
Sbjct: 195 AEQVDDVMMFLAGKNDQLVTRLRERMSSYAEREEFEAAARLRDSIQAVDKTLARQNVVQE 254

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
            +   D F ++   ++  I   F   G+  G  +      +      + ++  + + T  
Sbjct: 255 QFLDQDVFGMWREGDVVEIAVLFIRNGKLVGRRSLRQGDQAFPDGQVLANFVQQYYATGT 314

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I++  E ++ +++        G KVKI  P++  + +++  A  NA  S   + +
Sbjct: 315 LVPDEIVVGVELDDEAVIAEWLAGLRGKKVKILHPQRSTRARLLALAEKNAAASAASRQN 374

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            +   +  L+    +  L  +P+RIE +D +HI G   V  MVV  +    ++ YRKF +
Sbjct: 375 RDRDAEDTLRKLQARLGLKRLPRRIECFDIAHIQGSVTVASMVVFVDGVAERSLYRKFKV 434

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQ---------------LIKNEENLNFHPKKQEYSFPS 462
                 T DD A M  VL RRF +                +   E        +  S   
Sbjct: 435 KS---VTNDDFAAMYEVLSRRFRRALAAQAEAEATAEADGVGEGEGEGADGTGKTGSSWE 491

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNV----ENRITIISIAKGPKRSAGME-----KFFVK 513
            PD++++DGGKGQL  A   L  L +    E    +I +AK  +R    E      +   
Sbjct: 492 MPDLLVVDGGKGQLGQALTALADLGIKITAEKGFDVIGLAK--EREISGEALPDRVYLRN 549

Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLL 572
           + EA+ L      LY + R+RDEAHRFA T HR+RR + A  S LD+I GIG  R+R LL
Sbjct: 550 RKEAVRLRPNTAELYLLSRVRDEAHRFANTFHRERRNRTALRSSLDDIPGIGAKRRRALL 609

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           +  G++K I ++S E L+++ G+ +K A  +Y
Sbjct: 610 RELGSLKAIKQASLEELSAVSGMGRKAAEAVY 641


>gi|284928621|ref|YP_003421143.1| Excinuclease ABC subunit C [cyanobacterium UCYN-A]
 gi|284809080|gb|ADB94785.1| Excinuclease ABC subunit C [cyanobacterium UCYN-A]
          Length = 629

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/618 (31%), Positives = 305/618 (49%), Gaps = 26/618 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
           + P  PGVY MLD    +LY+GK+  L+ R++SY      HT RI  M+ Q+NNI F VT
Sbjct: 23  EFPLEPGVYLMLDKQEDILYIGKSKRLRVRVRSYFQEGQYHTPRINLMLQQVNNIEFIVT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSY 121
             E EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT   + P ++  R       +  Y
Sbjct: 83  DNEAEALALEANLIKQYQPYFNVLLKDDKKYPYVCITWSEEYPRIFITRKRRLDNKKDRY 142

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     + +T+  ++R F LR     +F  + RPCL + I RC G C   I+S +Y 
Sbjct: 143 YGPYVDTHKLRETLRLVRRVFPLRQRKRPLF--KDRPCLNYDIGRCPGVCQKLITSNQYH 200

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V +      G    L +++   M   + +  +E A   RDR+ AL  +  +   +   
Sbjct: 201 KIVAKIAMIFQGRTEELVQRLDTQMKLYSTQLKFEQAAQIRDRIEALQELNINQKVVLPN 260

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +L  + +  CIQ      G+  G   FF    S +  + +       ++  +
Sbjct: 261 DTVSRDVIALASDNSCTCIQLFQIRGGRLIGRLGFFADNISGTLGSILQRVLEEHYWQVE 320

Query: 298 P--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           P   P  +++  E  +  +       + G KV +TVPK+ +K +II     NA     + 
Sbjct: 321 PIEIPNEVVVQYELPKVDVFTDWLKNKKGKKVTVTVPKKQQKIEIINLVQRNAAYELEKT 380

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                 +   L+D T    L +IP RIE YD SHI G +AV   VV       +  YR +
Sbjct: 381 QKDMEQNLSSLQDLTTILNLKNIPYRIEGYDISHIQGSNAVASQVVFINGIPAQQSYRHY 440

Query: 416 NLHPND--VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
            +      +   DD A +  V+ RRF+              +       +P++V++DGGK
Sbjct: 441 KIKNTAIGIGHSDDFACLAEVIGRRFNSYRN-------LKIEDLLKLDDYPNLVLIDGGK 493

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           GQLSA   +LK++ +   + +IS+AK  +     E F      AL+ N   P L  ++++
Sbjct: 494 GQLSAVVKILKEMKLFPLLEVISLAKKNE-----EIFVPGNSNALITNSEQPGLKLLRKV 548

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFAI  HR++R K +  S LD+I G+G  R++ LL  F +V  I  +S E+L   
Sbjct: 549 RDEAHRFAINYHRQQRLKYSRSSQLDDIPGLGFQRQKELLSFFHSVDYIREASVESLRKA 608

Query: 593 EGISKKIACKIYNHFHKN 610
            GI   +A +IY +FH +
Sbjct: 609 PGIGYSLAREIYEYFHPD 626


>gi|108761605|ref|YP_630852.1| excinuclease ABC subunit C [Myxococcus xanthus DK 1622]
 gi|119367676|sp|Q1D921|UVRC_MYXXD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|108465485|gb|ABF90670.1| excinuclease ABC, C subunit [Myxococcus xanthus DK 1622]
          Length = 646

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 187/634 (29%), Positives = 313/634 (49%), Gaps = 41/634 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI-NNIRF 60
             + +P  PGVY M D  G+V+YVGKA NL+ R++SY +    T     ++ Q+  ++  
Sbjct: 8   KLDALPTEPGVYLMKDRRGQVIYVGKAINLRSRVRSYFNRTGDTRVFVSLLDQLLGDLET 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +   E EALLLE  +IK+ +PRFN+LL+DDK F  + +      P L   R        
Sbjct: 68  VLVSNEKEALLLENELIKKHRPRFNVLLKDDKQFISLRLDRTQPYPRLEVVRKYERDGAR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP++S  A+ +T+  + R F LR+C D V  +R RPCLL QI RC  PC   +  E Y
Sbjct: 128 YFGPYSSAGAIRETLRVVNRFFRLRTCTDHVLANRKRPCLLHQIGRCPAPCVYPVPQEDY 187

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
              V E   FL G    L E +   M +A  +  +E A   RD+L A+            
Sbjct: 188 HRSVDEVVMFLEGKAGELVEGLRLRMKRAAQELKFEEAARIRDQLNAIERSLERQKVATT 247

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
            +   D F+ +   +       +   G+       F     E  + ++++ F+  +Y   
Sbjct: 248 DFKDQDVFAFHREGDRILFYVLWVRQGR-LNGGQAFPFGSQEFPDEELIASFVNLYYDQG 306

Query: 298 PC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                E +L  E  + T  LE    ++ G +V++ VPK+GEK  +++ A  NA ++  ++
Sbjct: 307 SFVPEEVLLPLELEDGTGGLEALLTERKGERVRVLVPKRGEKLDLVKMAAKNAEQAFVER 366

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
             T+     +L    ++  L + P R+E +D SH  G + V   V V +    K++YRK+
Sbjct: 367 RRTKDETDTVLSRLQQRLGLRNFPCRMECFDISHFQGSAIVASQVAVTDGDADKSRYRKY 426

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    ++ QDD A M  V+ RR  + +++ +                PD++++DGGKGQ
Sbjct: 427 KIKT--LEKQDDFASMYEVISRRLKKGLEDND---------------LPDLLVIDGGKGQ 469

Query: 476 LSAAQGVLKKLNVENRITIISIAK---------GPKRSAGME-KFFVKKGEALVLNMRDP 525
           L++A   +K + VE  + ++ +AK           + +   E  F V + + +VL+    
Sbjct: 470 LASAHAAMKDVGVE-SVDVVGLAKSRDLEVFDRDAESARSPERIFVVGRKDPIVLSQNSA 528

Query: 526 ILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            ++ + R+RDEAHRFAIT  ++  RK    S L++I G+G  R++ LL+ FG++K +  +
Sbjct: 529 EMFMLTRMRDEAHRFAITFQKQVLRKSRVRSALEDIPGVGETRRKQLLRHFGSLKRVGDA 588

Query: 585 SPETLASIEGISKKIACKIYNHFH---KNTSHTP 615
           S E LA + G    +A +++   H   +  +  P
Sbjct: 589 SIEELAEVVG--PAMAERVHAGLHGHPEEDAEDP 620


>gi|282890652|ref|ZP_06299175.1| hypothetical protein pah_c022o275 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499649|gb|EFB41945.1| hypothetical protein pah_c022o275 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 614

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 198/628 (31%), Positives = 308/628 (49%), Gaps = 32/628 (5%)

Query: 2   SSEQM---PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINN 57
             + +   P  PGVY M +  G +LYVGKA NL+ RI+ Y   S +    I  ++ QI +
Sbjct: 4   DPKTLSLYPNHPGVYLMKNRTGMILYVGKAKNLRTRIRQYFMTSGDGREMIPFLVPQIES 63

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK--HRDSS 115
           I      +E EALLLE+++IK+ KP++N LL+DDKS+  + I  K+  P L    +R   
Sbjct: 64  IETISVTSEKEALLLESHLIKKHKPKYNALLKDDKSYVALKINVKNPWPMLSLERYRGKP 123

Query: 116 TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
              G YFGP+    A  +T++ L R F LR C+D+ F  RTRPC+L+ +KRC  PC  + 
Sbjct: 124 KADGVYFGPYTHAGAARRTLDLLHRLFPLRQCSDAEFARRTRPCILYDMKRCIAPCVQKC 183

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           + E+Y   V    KFL G N  + +++ + M       ++E A    D +  +       
Sbjct: 184 TKEEYQIQVDRTIKFLRGQNKEILQEMYQEMETYAENLEFEKAGKSLDTIRYIEKTIEPQ 243

Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                     D   +Y       +    F  G+   + +F     ++     + S+ L+ 
Sbjct: 244 YVDSVSGKDADALGIYRQGEDVMLCQLLFREGRLTSSQSFNFTKIADDDAELLTSFVLQH 303

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
           +      P  ILL  E E+   L     +    KV++  PK+G K  +I+ A  NA  S 
Sbjct: 304 YQNRDFLPHEILLPIEIEDEVALTELLSENRARKVQVYAPKRGGKSVLIDMAQANAEASF 363

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            ++ + +   + IL    ++F L + PKRIE  DNSHI G   V  ++V  +       Y
Sbjct: 364 KKEKNEQTLRENILLAIQEQFHLTNYPKRIECIDNSHIAGTEHVSSVIVFTDGKKDTRNY 423

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           R + L        DD   MR VL RR+ +     +                PD++I+DGG
Sbjct: 424 RTYTLKQA--GPSDDYGAMREVLTRRYGKAKDEND---------------LPDLLIIDGG 466

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILY 528
           KG L+ A  VL +L++   + +I IAK      R   +E+ F+    + L+L +  PIL+
Sbjct: 467 KGHLNIALKVLVELDI-ISVNVIGIAKEQGRHDRGLTLEQVFLPNVKDPLILKVTSPILF 525

Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +Q++RDEAHRF I  HRKR  K+   S LD++ GIGP +K+ LL+ FG++K I  +S E
Sbjct: 526 ILQQIRDEAHRFVIKFHRKRMQKRTIKSILDDVPGIGPAKKKALLKHFGSIKKIKEASDE 585

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTP 615
            L  ++GIS+    ++   F    +  P
Sbjct: 586 ELKKMKGISEGNIVQLRQFFAVKANDDP 613


>gi|242373378|ref|ZP_04818952.1| excinuclease ABC subunit C [Staphylococcus epidermidis M23864:W1]
 gi|242348741|gb|EES40343.1| excinuclease ABC subunit C [Staphylococcus epidermidis M23864:W1]
          Length = 594

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 172/613 (28%), Positives = 283/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++S+I N  F VT +
Sbjct: 15  VPLEPGCYLMKDRNAQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLIVTRTVKKGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++    Y +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLNVYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   M +A+   D+E A  +RD +  + ++      +       
Sbjct: 189 EITDFLNGEDKTIINNLEDKMTKASESLDFEQAKEYRDMIQHIHNLTKKQKIMSTDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +                         P+ 
Sbjct: 249 DVFGYSVSKGWMCVQVFFIRQGNMIKRDATMIPIQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+++I+ A  NA              
Sbjct: 309 VHVPKNLDKDIIKSVVDTK-------IVQPSRGSKKEMIDLANHNAEVQLENKFELIARD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTVKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEVVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+++GIG  RK  LL++FG++K +  +S + L    G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDVDGIGSKRKTTLLRTFGSIKKMKEASLDDLKK-SGLP 580

Query: 597 KKIACKIYNHFHK 609
           +K+A  +      
Sbjct: 581 EKVAKNLQQALQN 593


>gi|270295026|ref|ZP_06201227.1| excinuclease ABC, C subunit [Bacteroides sp. D20]
 gi|270274273|gb|EFA20134.1| excinuclease ABC, C subunit [Bacteroides sp. D20]
          Length = 606

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 175/622 (28%), Positives = 310/622 (49%), Gaps = 49/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 16  NLPESPGIYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P +++ R       SY+GP
Sbjct: 76  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 134

Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++     RT  L    +++   +   CL + IK C+GPC G+ S E+
Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCHLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQSQEE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    ++  + + M +   +  +E A   +++   L + +  ++ + 
Sbjct: 195 YLKNIAEIKEILKGNTQEIERMLFQQMQELAAEMKFEEAQKIKEKYLLLENYRAKSEVVS 254

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++  +       A +       G      TF  K     +  ++LS  + +  
Sbjct: 255 NVLHNIDVFSIEEDSDEKSAFVNYLHITNGAINQAFTFEYKKRLNESKEELLSLGIIEMR 314

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  L            V  T+P++G+K+K++E +++N  +    
Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     +LK+  ++  L  +P +IE +DNS+I G   V   VV  +    
Sbjct: 365 RLKQAEKLNPEQRTVRLLKEIQQELHLDRLPMQIECFDNSNIQGSDPVAGCVVFVKGKPS 424

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V+  DD A M+ V++RR+ + I+ +                 PD++I
Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEK--------------APLPDLLI 468

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+SA +  + +L +   I I  +AK  K     E  +    + + L    P+  
Sbjct: 469 TDGGKGQMSAVKEAIDELGL--NIPIAGLAKDGKHRTS-ELLYGYPPQTIGLKQNTPLFR 525

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAIT HR +R K    S LDEI GIG   K  LL+ F +VK I  +S E
Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQIASALDEIKGIGEKTKSALLKEFKSVKRIREASAE 585

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            LA++ G  +  A  I  +F +
Sbjct: 586 ELAAVVG--EAKAKIIQTYFSE 605


>gi|319401540|gb|EFV89750.1| excinuclease ABC, C subunit [Staphylococcus epidermidis FRI909]
          Length = 594

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 15  VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  EKY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   MN+A+ + D+E A  +RD +  + ++      + +     
Sbjct: 189 EITDFLNGEDKTILNHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +                         P+ 
Sbjct: 249 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPIQQTEEEEFYTFIGQFYSLNQHLIPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+ +I  A  NA              
Sbjct: 309 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK  LL++FG++K +  +S + L    G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 580

Query: 597 KKIACKIYNHFHK 609
           +K+A  + N    
Sbjct: 581 EKVAKNLQNALQN 593


>gi|57866656|ref|YP_188312.1| excinuclease ABC subunit C [Staphylococcus epidermidis RP62A]
 gi|71153398|sp|Q5HQ28|UVRC_STAEQ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|57637314|gb|AAW54102.1| excinuclease ABC, C subunit [Staphylococcus epidermidis RP62A]
          Length = 594

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 15  VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  EKY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   MN+A+ + D+E A  +RD +  + ++      + +     
Sbjct: 189 EITDFLNGEDKTILNHLEERMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +                         P+ 
Sbjct: 249 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPIQQTEEEEFYTFIGQFYSLNQHLIPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+ +I  A  NA              
Sbjct: 309 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK  LL++FG++K +  +S + L    G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 580

Query: 597 KKIACKIYNHFHK 609
           +K+A  + N    
Sbjct: 581 EKVAKNLQNALQN 593


>gi|163787198|ref|ZP_02181645.1| excinuclease ABC, C subunit [Flavobacteriales bacterium ALC-1]
 gi|159877086|gb|EDP71143.1| excinuclease ABC, C subunit [Flavobacteriales bacterium ALC-1]
          Length = 597

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 177/626 (28%), Positives = 303/626 (48%), Gaps = 52/626 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVYQ  D   +++YVGKA N++KR+ SY   ++   +   ++  I +++ 
Sbjct: 8   IQIKTLPHQPGVYQYFDADEKLIYVGKAKNIKKRVSSYFTKHHEYGKTRVLVKNIASVKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ +P++N++L+DDKS+P+I I  K + P ++  R        
Sbjct: 68  IVVETENDALLLENNLIKKYQPKYNVMLKDDKSYPWICI-KKERFPRVFSTRRVFKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S+  V+  +  ++  + LR+C        +   + + CL + +  C GPC G  
Sbjct: 127 YFGPYTSMKTVKTLLGLIKGLYQLRTCNYDLSEAKIKAGKYKVCLEYHLGNCKGPCEGYE 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           + E+Y   +   ++ L G   +  ++    M Q      +E A   +++L  L + Q  +
Sbjct: 187 TEEEYHSNITAIREILKGNFKDSLQQFRIQMKQHAENMQFEDAQKIKEKLEVLENYQAKS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D FS+  ++  A +      +G    + T  LK   + ++ ++L   + +
Sbjct: 247 TIVNPKISDVDVFSIVSDETYAYVNFLQLSYGSIIRSHTLELKKKLQESDTELLELAITE 306

Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                    + I +  +                 ++K+T+PK G+K+ I++ +  NA   
Sbjct: 307 IRQRFNSNSKEIYVPFKVNLGE------------QIKVTIPKLGDKKSILDLSRRNAMYY 354

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
              KL        +     I+        L   P+ IE +DNS+I G   V   VV    
Sbjct: 355 RMDKLKQMKIVDPDRHANRIMAQMKADLRLSEEPRHIECFDNSNIQGTHPVAACVVFKNG 414

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YR FN+    V   DD A M  V+ RR+ +L++ ++ L              P 
Sbjct: 415 KPSKKDYRHFNIKT--VVGPDDFASMEEVVYRRYKRLVEEKQPL--------------PQ 458

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQLS+A   L  L +  +I II IAK  +     E F+      L L+ +  
Sbjct: 459 LIIIDGGKGQLSSALKSLDNLGLRGKIAIIGIAKRLE-----ELFYPDDSIPLYLDKKSE 513

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LR+EAHRF I  HR RR K+   + L+ I+G+G      L++ F TVK I+ +
Sbjct: 514 TLKIIQQLRNEAHRFGIEHHRNRRSKSALTTELENISGVGEQTIIDLMKRFKTVKRIANA 573

Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610
             + L ++ G+S+  A KIYN++HK 
Sbjct: 574 KLDELEAVVGVSR--ANKIYNYYHKE 597


>gi|317478019|ref|ZP_07937201.1| excinuclease ABC [Bacteroides sp. 4_1_36]
 gi|316905808|gb|EFV27580.1| excinuclease ABC [Bacteroides sp. 4_1_36]
          Length = 606

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 176/622 (28%), Positives = 310/622 (49%), Gaps = 49/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 16  NLPESPGIYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P +++ R       SY+GP
Sbjct: 76  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 134

Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++     RT  L    +++   +   CL + IK C+GPC G+ S E+
Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCHLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQSQEE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    ++  + + M +   +  +E A   + +   L + +  ++ + 
Sbjct: 195 YLKNIAEIKEILKGNTQEIERMLFQQMQELAAEMKFEEAQKIKKKYLLLENYRAKSEVVS 254

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++  +       A +       G      TF  K     +  ++LS  + +  
Sbjct: 255 NVLHNIDVFSIEEDSDEKSAFVNYLHITNGAINQAFTFEYKKRLNESKEELLSLGIIEMR 314

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  L            V  T+P++G+K+K++E +++N  +    
Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     +LK+  ++  L  +P +IE +DNS+I G   V   VV  +    
Sbjct: 365 RLKQAEKLNPEQRTVRLLKEIQQELHLDRLPMQIECFDNSNIQGSDPVAGCVVFVKGKPS 424

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V+  DD A M+ V++RR+ + I+ +                 PD++I
Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEK--------------APLPDLLI 468

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+SA + V+ +L +   I I  +AK  K     E  +    + + L    P+  
Sbjct: 469 TDGGKGQMSAVKEVIDELGL--NIPIAGLAKDGKHRTS-ELLYGYPPQTIGLKQNTPLFR 525

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAIT HR +R K    S LDEI GIG   K  LL+ F +VK I  +S E
Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQIASALDEIKGIGEKTKSALLKEFKSVKRIREASAE 585

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            LA++ G  +  A  I  +F +
Sbjct: 586 ELAAVVG--EAKAKIIQTYFSE 605


>gi|242242446|ref|ZP_04796891.1| excinuclease ABC subunit C [Staphylococcus epidermidis W23144]
 gi|242234096|gb|EES36408.1| excinuclease ABC subunit C [Staphylococcus epidermidis W23144]
          Length = 600

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 21  VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 79

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 80  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 138

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  EKY +   
Sbjct: 139 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 194

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   MN+A+ + D+E A  +RD +  + ++      + +     
Sbjct: 195 EITDFLNGEDKTILNHLEERMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 254

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +                         P+ 
Sbjct: 255 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPIQQTEEEEFYTFIGQFYSLNQHLIPKE 314

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+ +I  A  NA              
Sbjct: 315 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 367

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 368 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 426

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 427 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 470

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 471 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 527

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK  LL++FG++K +  +S + L    G+ 
Sbjct: 528 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 586

Query: 597 KKIACKIYNHFHK 609
           +K+A  + N    
Sbjct: 587 EKVAKNLQNALQN 599


>gi|146296208|ref|YP_001179979.1| excinuclease ABC, C subunit [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|238685556|sp|A4XIQ3|UVRC_CALS8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|145409784|gb|ABP66788.1| Excinuclease ABC subunit C [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 593

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 204/608 (33%), Positives = 306/608 (50%), Gaps = 35/608 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY M D  G+V+YVGKA NL+ R++ Y  +++ T +   M+ +I +  + VT 
Sbjct: 10  NLPTTPGVYMMKDENGKVIYVGKAVNLRNRVRQYFQNSDMTPKTRLMVKKIKDFEYIVTD 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TEVEAL+LE N+IK  +P++N+LLRDDK++ YI IT+    P L   R        YFGP
Sbjct: 70  TEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGAKYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           + S  +V++TI  L+  F LR+C         + RPCL F I+RC G C G+I  E+Y +
Sbjct: 129 YVSGYSVKQTIELLKSLFMLRTCKRKFPDQLGKGRPCLNFYIERCLGVCKGDIPEEEYQK 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239
            V +A K LSG    + E++ + M +      +E A   ++++ +L  I      IY   
Sbjct: 189 LVEKAVKVLSGKGDEIVEELKKKMFEYADNLMFEKAQEIKNKITSLEQIITKQKVIYADD 248

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KP 298
              D  +   + +  CI       G+      F LK D      ++   FL Q+Y+D   
Sbjct: 249 RSEDVINYAEDSSNICIVVLVIRNGKLINKEEFVLKNDE-----EVFERFLEQYYSDVVS 303

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I+L  E      +E    K YG+K KI VPKQGEK++++E A  NA  S   K   
Sbjct: 304 VPKEIILPHEVGNGENIEKMIEKLYGFKAKIVVPKQGEKKQLLEMAKKNAEISLVNKQRI 363

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E  +   L        + H  ++IE YD S++ G   VG +VV  +  F K+ YRKF L 
Sbjct: 364 ENYYIEALLHLKNLLGIEHDIEKIESYDISNLAGADNVGTLVVFEDGKFNKDLYRKFKLK 423

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               + QDD   ++ VL RRF+ L K                   PD++++DGG+ Q++A
Sbjct: 424 S--FEGQDDIRSVKEVLTRRFTNLEK---------------HGRLPDLILIDGGQNQVNA 466

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  VL+ L     I +  + K  +         + KG+ L +     +   I  +++E H
Sbjct: 467 AVEVLRSLGF--NIPVAGMVKDDRHKTRD---LIYKGQELNIQRDSLVFKLISTIQEETH 521

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFA+  HR+ RKK    S LDEI GIG  RK  L + FG++  + ++S E +     I  
Sbjct: 522 RFAVKYHRELRKKHLYESILDEIEGIGEKRKIKLFRIFGSIDNLRKASIEEIVKAADIPY 581

Query: 598 KIACKIYN 605
            IA KI  
Sbjct: 582 DIALKIKE 589


>gi|300814484|ref|ZP_07094745.1| excinuclease ABC, C subunit [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511402|gb|EFK38641.1| excinuclease ABC, C subunit [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 619

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 195/617 (31%), Positives = 309/617 (50%), Gaps = 24/617 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           Q+P+ PGVY M +    ++YVGKA +L+KR++ Y  S    + ++  M+S I +  + + 
Sbjct: 10  QLPDKPGVYIMKNSTDEIIYVGKAKSLRKRVRQYFGSYGKSSAKVKSMVSHIYDFEYIIV 69

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L+LE+N+IK   P++NILLRDDK +PYI +T     P + K R        YFG
Sbjct: 70  ENEVESLILESNLIKDNLPKYNILLRDDKQYPYIKVTTNELYPRVMKTRRILKDGAKYFG 129

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYM 181
           P+  V AV  +I++ +  F LR+C+ ++ ++  + R CL F I +C GPC G +    Y 
Sbjct: 130 PYPDVYAVNDSIDTFESLFPLRTCSLNMEKNMGKYRACLNFYIGKCLGPCQGNVDENSYK 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN----DS 237
           + + E   FLS  +  +  ++   M + +   +YE A   RDR+  L  ++         
Sbjct: 190 KMIDEILDFLSLKSDAILTRLEDKMKEFSYNLEYEKAAEIRDRIKNLKELREKQLISNPM 249

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
             N  D  +L    +   IQ  F   G+  G   + L         +I S F++QFY   
Sbjct: 250 STNDKDIIALAKGIDEVLIQIFFIRDGKIIGREHYMLNDYFNEPLEEIFSAFIKQFYNGT 309

Query: 298 P-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ I++ EE  +  +LE     +   KV ITVP+ G+K+++I+    NA     +  
Sbjct: 310 SYIPKEIIIEEEPAQKEVLEEWLSTKRSNKVTITVPQIGQKKELIQMVHKNALDMINKYG 369

Query: 357 STEISHQM----ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                        L++ T    L     RIE YD S+I G  +VG MVV  +    K+ Y
Sbjct: 370 DKYAKRAKSNSLALEEITDILGLDIKLNRIEAYDISNISGVESVGSMVVFEKGESKKSDY 429

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RKF +    V   +D A ++ VL RRF + I    +    P     SF  +PD++++DGG
Sbjct: 430 RKFRIKT--VIGPNDYASLKEVLTRRFLRGINERIDKEKGPS----SFSRFPDMIMMDGG 483

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQ++ A  VLK+L V   I +I + K    +       +   +   L++       I +
Sbjct: 484 KGQVNIALDVLKELGV--NIVVIGLVKDDFHTTRG---IIYNNKEYSLDLNSKGYKMIYK 538

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +++EAHRFAI  HR  R K    S LD+I  IG  RK  LL+ F ++  I ++S + L  
Sbjct: 539 IQEEAHRFAINYHRSLRNKDMFKSELDDIPLIGEKRKNNLLKYFKSLDKIKKASVDELKE 598

Query: 592 IEGISKKIACKIYNHFH 608
           + G+  + A  +YNHF+
Sbjct: 599 VSGMDIRSAESLYNHFN 615


>gi|116070556|ref|ZP_01467825.1| excinuclease ABC subunit C [Synechococcus sp. BL107]
 gi|116065961|gb|EAU71718.1| excinuclease ABC subunit C [Synechococcus sp. BL107]
          Length = 661

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 192/638 (30%), Positives = 302/638 (47%), Gaps = 32/638 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            + +P  PG Y M D   R+LYVGK+  L+ R++SY  S +  + RI  M  Q+  I F 
Sbjct: 21  LKDIPAEPGCYLMRDGDDRILYVGKSKTLRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 80

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT +E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 81  VTDSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 140

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R F LR     + + RT  CL + I RC G C   ISS+ 
Sbjct: 141 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHQDRT--CLNYSIGRCPGVCQEMISSDD 198

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   + +      G +  L+  +   M +   + DYESA   RD+L  L  +        
Sbjct: 199 YHRTLRKVAMVFQGRSDELQHLLQEQMQKYADRTDYESAARVRDQLHGLDQLTADQKMSL 258

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  ++ LA +Q      G+  G   +     S  +   IL   + + Y+
Sbjct: 259 PDSSVSRDVLALACDERLAAVQLFQMRAGKLVGRLGYTAD-ASGLSPGLILQRVIEEHYS 317

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+     +  LLE    +Q   KV+I  P++ +K  +IE    NA    
Sbjct: 318 QVDAVEVPPQLLVQHPLPQQLLLEEWLTEQRERKVQIHCPQRRQKADLIELVQRNAEFEL 377

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +    +    +  +D  +   LP  P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 378 LRAKQGQEQQALSTEDLAQLLDLPLPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 437

Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENL--------NFHPKKQEYSFPS 462
           RK+ +  + ++     D   M  ++ RRF +  + + +               Q      
Sbjct: 438 RKYKIQSSSIRAGHSDDFMAMAEIMRRRFRRWARAKADGVDLGALRQKGGSALQTDGLND 497

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPD+V++DGGKGQLSA    L++LN+ + + + S+AK  +     E F   + + L    
Sbjct: 498 WPDLVMIDGGKGQLSAVMEALRELNLHDDLNVCSLAKQRE-----EVFLPGESQPLESEA 552

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA++ HR++R  +   S L +I G+G  R R LL  F ++  I
Sbjct: 553 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGLGAKRVRDLLSHFHSIDAI 612

Query: 582 SRSSPETLASIEGISKKIACKIYNHFH---KNTSHTPT 616
             +S +TLA   G+   +A  I+N FH   +N    P+
Sbjct: 613 QLASVDTLAKAPGVGPVLAQDIFNFFHPTNENNDSLPS 650


>gi|225872881|ref|YP_002754338.1| excinuclease ABC, C subunit [Acidobacterium capsulatum ATCC 51196]
 gi|254764918|sp|C1F4W9|UVRC_ACIC5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|225794199|gb|ACO34289.1| excinuclease ABC, C subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 645

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 192/649 (29%), Positives = 313/649 (48%), Gaps = 58/649 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
               +P  PGVY   +  G V+YVGKA NL+ R++SY+  ++    +   ++ +  ++ +
Sbjct: 6   KIRTLPTGPGVYLYKNADGEVIYVGKAKNLRSRVRSYLLEASQANAKTGSLMREAVDLDY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
                E EAL LE N+IK+ KPRFN+LLRDDK++PY+ +T   + P ++  R       +
Sbjct: 66  ITVGNEHEALALENNLIKQRKPRFNVLLRDDKTYPYVKLTLGDRYPKVFVTRRLRKDGAA 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEK 179
           Y+GPF   +   + ++ + R+F L SC   + R+  R CL + IKRC GPC     + E 
Sbjct: 126 YYGPFFPGNLAYRIVDLIHRSFLLPSCKVDLSRYHARACLQYYIKRCLGPCVKHLTTPEA 185

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E V +A+ FL G   +L+  +   M +A   E +E A  +RD L  L  +Q       
Sbjct: 186 YREAVRDAQWFLEGRGADLERSLEVRMQEAAAAEQFELAAKYRDLLVTLHQLQEKQRVAS 245

Query: 240 NRMDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE----------------- 279
              D    F  ++   +  +       G+      FF +   E                 
Sbjct: 246 ADDDDADVFGYHYENGMLAVNLFHMRGGKMVDRREFFWEELPEFMEEGAQEEEVLPAQAE 305

Query: 280 ----------STNAQILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVK 328
                            S  L+Q Y ++P  P +I +     +   L     +Q  ++++
Sbjct: 306 GRGEVQVELRFEPGAFFSALLKQIYIEQPYVPRSIYVPVNFADREALAGLLAEQTHHRIE 365

Query: 329 ITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKD-FTKKFALPHIPKRIEIYDN 387
           + VP++G+KR +++ A  NA +S+ Q+      +Q  +++       L  +P+RIE +D 
Sbjct: 366 LAVPQRGDKRSLVDLAGQNARQSYEQRFRVMQPNQKAIQEALQDALMLEELPRRIECFDI 425

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447
           SHI G   V  MVV       K  YRKF +    V   DD A MR VL RR+ ++I+ ++
Sbjct: 426 SHIQGAETVASMVVWENGAMKKADYRKFQIKT--VSGVDDFASMREVLTRRYRRVIEEKQ 483

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
            +              PDV+++DGG GQL AA   L++L    + T+ SIAK  +     
Sbjct: 484 AM--------------PDVILIDGGIGQLRAAAAALEELGQTTQ-TVASIAKREEIIY-- 526

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPL 566
              +  + E +VL  R P+L+ +QR+RDE+HRFAI  HRKRR+ +   S L EI G+G  
Sbjct: 527 --LYGHEDEPIVLERRSPVLHLVQRIRDESHRFAIAYHRKRREMRDRDSELLEIPGVGTR 584

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
            +  LL+ FG+++ + ++  E L ++  + +  A  I  HF    +   
Sbjct: 585 TRTRLLEHFGSLRGVRKADVEALTAV--VPRPTAEAIAAHFQGEKAEPE 631


>gi|160888680|ref|ZP_02069683.1| hypothetical protein BACUNI_01097 [Bacteroides uniformis ATCC 8492]
 gi|156861994|gb|EDO55425.1| hypothetical protein BACUNI_01097 [Bacteroides uniformis ATCC 8492]
          Length = 606

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/622 (28%), Positives = 310/622 (49%), Gaps = 49/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 16  NLPESPGIYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P +++ R       SY+GP
Sbjct: 76  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 134

Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++     RT  L    +++   +   CL + IK C+GPC G+ S E+
Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCHLNLSPENIRARKFNVCLEYHIKNCAGPCIGKQSQEE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    ++  + + M +   +  +E A   + +   L + +  ++ + 
Sbjct: 195 YLKNIAEIKEILKGNTQEIERMLFQQMQELAAEMKFEEAQKIKKKYLLLENYRAKSEVVS 254

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++  +       A +       G      TF  K     +  ++LS  + +  
Sbjct: 255 NVLHNIDVFSIEEDSDEKSAFVNYLHITNGAINQAFTFEYKKRLNESKEELLSLGIIEMR 314

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  L            V  T+P++G+K+K++E +++N  +    
Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     +LK+  ++  L  +P +IE +DNS+I G   V   VV  +    
Sbjct: 365 RLKQAEKLNPEQRTVRLLKEIQQELHLDRLPMQIECFDNSNIQGSDPVAGCVVFVKGKPS 424

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V+  DD A M+ V++RR+ + I+ +                 PD++I
Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEK--------------APLPDLLI 468

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+SA + V+ +L +   I I  +AK  K     E  +    + + L    P+  
Sbjct: 469 TDGGKGQMSAVKEVIDELGL--NIPIAGLAKDGKHRTS-ELLYGYPPQTIGLKQNTPLFR 525

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAIT HR +R K    S LDEI GIG   K  LL+ F +VK I  +S E
Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQIASALDEIKGIGEKTKSALLKEFKSVKRIREASAE 585

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            LA++ G  +  A  I  +F +
Sbjct: 586 ELAAVVG--EAKAKIIQTYFSE 605


>gi|317132997|ref|YP_004092311.1| excinuclease ABC, C subunit [Ethanoligenens harbinense YUAN-3]
 gi|315470976|gb|ADU27580.1| excinuclease ABC, C subunit [Ethanoligenens harbinense YUAN-3]
          Length = 618

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 168/614 (27%), Positives = 298/614 (48%), Gaps = 21/614 (3%)

Query: 1   MSSEQ--MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINN 57
           + +E   +P  PGVY M + +G ++Y+GKA  L+ R+  Y     +H  ++  M+  +++
Sbjct: 9   LKAESNTLPLSPGVYIMKNKSGNIIYIGKAKALKNRVSQYFWRFASHEGKVRKMVENVDH 68

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
             + +T +E EAL+LE ++IK+ KP++NILL+DDK + YI ++ + + P +   +  +  
Sbjct: 69  FDYILTDSEFEALVLECSLIKQHKPKYNILLKDDKGYSYIRVSLQEEWPRVESAKQVADD 128

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEI 175
              Y GP+ S  AV++T++   + F L  C+    +   + RPCL + I++C  PC G++
Sbjct: 129 GALYLGPYISSFAVKETVDEAVKAFRLPVCSRHFPQDIGKGRPCLNYYIRQCCAPCRGKM 188

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
            + +Y E V  A  FL GG   +  ++   M   +   ++E A   RDR+AA+  I+   
Sbjct: 189 PNAEYRELVDNAVTFLKGGYGLILNQLQEQMTVFSDALEFEKAARIRDRIAAIQKIRERQ 248

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                     D  ++  +     ++      G+     +F  +   +   A    +    
Sbjct: 249 KVVSSRVEEQDVIAMAGDGCSTAVEVFIIRGGRLCDRSSFLFEFMQDE-PAARAEFLRSY 307

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
           +   K  P  + L    E+  L+E       G KV ITVP++GE+  +      NA    
Sbjct: 308 YSQIKQAPPRVTLDGPTEDKELIEQYLSGLAGRKVSITVPQKGEQAALTAMVRANAQEKL 367

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     + +L +  K   LP  P  IE YD S+  G   V  MVV  +   +K+ Y
Sbjct: 368 NHLSQRPAHGEKVLDELGKLLGLPGRPAYIESYDISNTAGTGVVAGMVVFADGKPLKSAY 427

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           ++F +    V+ QDD A MR VL RR ++L + +E      +     F   PD+++LDGG
Sbjct: 428 KRFAIKT--VEGQDDYACMREVLSRRLARLKEAKEKGQEAGE----GFGRVPDLILLDGG 481

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           +G ++A + VL+    +  I +  + K  K          + G  + +N    +   +  
Sbjct: 482 RGHVAAVRPVLEASGFD--IPLFGMVKDDKHRTRA---IARDGGEIAINASRGVFTLVSN 536

Query: 533 LRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +++E HR+AI  H K ++K  +S  L    G+GP R R L++ FGT++ +  +S E LA+
Sbjct: 537 IQEEVHRYAIAYHHKTQQKRGFSSRLTLAPGVGPARARALMKHFGTMEKLRAASEEELAA 596

Query: 592 IEGISKKIACKIYN 605
           + G+S+ +A  +  
Sbjct: 597 VPGMSRAVARTLKE 610


>gi|307701087|ref|ZP_07638112.1| excinuclease ABC, C subunit [Mobiluncus mulieris FB024-16]
 gi|307614082|gb|EFN93326.1| excinuclease ABC, C subunit [Mobiluncus mulieris FB024-16]
          Length = 702

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 189/696 (27%), Positives = 307/696 (44%), Gaps = 94/696 (13%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
              ++P  PGVY+  D  GRV+YVGKA NL+ R+ SY         R   M++   ++ +
Sbjct: 8   KPAEIPTAPGVYRWRDAHGRVIYVGKAKNLRNRLTSYFVDPAKLHPRTAKMVATAESVSW 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  +EVEAL LE   IK   P+FN++ +DDKS+PY  +T   + P +   R +      
Sbjct: 68  VVVGSEVEALTLEYTWIKEYDPKFNVMFKDDKSYPYFAVTLNQEFPRMGVLRSAHQRGVR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP---CLLFQIKRCSGPCTGEISS 177
           YFGP+ +V A+ +T + L+  F +R+C D VF         CL   I RCS PC G IS+
Sbjct: 128 YFGPYTAVWAIRQTSDLLETVFPVRTCTDGVFARARAAGRACLKGYIGRCSAPCIGRISA 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            ++ E  +    F+SG    L   +   M   +    +E A   RD+L AL  +   N  
Sbjct: 188 AEHRELANRVCDFMSGHEAGLLRDLENQMWAESKAFRFEEAAKKRDQLEALRKVLEKNAV 247

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +     D F+L  ++    +Q  +   G+ RG   +    + +   ++++S  L Q Y
Sbjct: 248 VMDTDTDADLFALAADELQVSVQVFYVRAGRIRGQRGWISTIEEDVDTSELMSLALEQIY 307

Query: 295 TDKP---------------------------CPENILLSEEAEETSLLEISFFKQYGYKV 327
                                           P+ IL+S    + + LE       G KV
Sbjct: 308 GQVAAKLAQSGGAQLREPSSATDVAHFDTTYIPKQILVSVIPADPASLEAWLSGLRGSKV 367

Query: 328 KITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIE 383
            I  P++G KR+ +++  +NA        T++ S      + L +  +   +     R+E
Sbjct: 368 TIRRPQRGMKREAVKRVELNAVDGLRLYKTRRASDLTQRNLALNELGRALGIDPPL-RVE 426

Query: 384 IYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC-AMMRMVLERRFSQL 442
            YD SH  G   VG MVV  +    KN YRKF +  +  +   D    M  VL RRF +L
Sbjct: 427 CYDISHTQGTFQVGSMVVFEDGAPRKNAYRKFTVRGSQGQGAADDTEAMNEVLRRRFERL 486

Query: 443 IKNEENLNFHPK-----------------------------------------------K 455
           I+ E       +                                               +
Sbjct: 487 IQEETPAPHEVEPAVTDRGDPAARYVGESSVAGDVGDAASRGANPNPGEGLSGDPSGEIR 546

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
           +   F   PD+V++DG   Q+ AA+  +    V + I ++ +AK  +     E + V   
Sbjct: 547 EPKRFSYRPDLVVVDGALPQVHAARAAMDAAGVWD-IPVVGLAKRLE-----EVWTVDSD 600

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574
             ++       LY +Q LRDE+HRFAIT HRK+R +    S LD I G+G ++++ LL+ 
Sbjct: 601 FPVIFPRTSTALYLLQYLRDESHRFAITAHRKKRGQAMTRSVLDGIPGLGSVKQKALLKH 660

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           FG+++ I R+S E ++ + G  + +A ++  +  +N
Sbjct: 661 FGSLRQIRRASAEDISKVPGFGQILATQVVKYLQEN 696


>gi|326802581|ref|YP_004320400.1| UvrABC system protein C [Sphingobacterium sp. 21]
 gi|326553345|gb|ADZ81730.1| UvrABC system protein C [Sphingobacterium sp. 21]
          Length = 599

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/624 (29%), Positives = 311/624 (49%), Gaps = 51/624 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN--HTHRITHMISQINNIR 59
             +++P  PGVYQ  D  G ++Y+GKA +L+ R+ SY   +   H  +   ++ +IN I 
Sbjct: 9   ELKKIPHKPGVYQYYDKQGTLIYIGKAKDLKNRVSSYFVKDEYLHNAKTRVLVRKINKIS 68

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119
           FT+  TE++A LLE ++IK+ +PR+N+LL+DDK++P+I+I    + P ++  R       
Sbjct: 69  FTIVDTEIDAWLLENSLIKKHQPRYNVLLKDDKTYPWIVI-KNERFPRIFWTRKIIKDGS 127

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGE 174
            YFGP+ASV  +   ++ ++  F LR+C      +++ + + R CL +QI  C GPC   
Sbjct: 128 KYFGPYASVGMMHAILSVIKEIFPLRTCNLPLTVNNIEQGKFRVCLEYQIGNCKGPCQAY 187

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
            + E+Y + +   K  L+G    + +++  N+  AT    +E A + + +L  LS+ Q+ 
Sbjct: 188 QTEEEYNQNIESIKDILNGKTGVVFKQLKANLEHATNNLQFELAHVLKQKLELLSNYQSK 247

Query: 235 NDS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291
           +       N +D F++   +  A +       G    T T  LK   + ++ ++LS  ++
Sbjct: 248 STIVSNTINDVDVFNIASEEGYAFVNFLKVMNGTVIQTQTLELKKRLDESDQELLSLAVQ 307

Query: 292 QFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA--- 348
           +  T        ++                      K TVP+ G+K+K+++ +  N    
Sbjct: 308 ELRTRFNSTSKEIIVP----------FNLDIESPNFKQTVPQLGDKKKLLDLSYKNVSFF 357

Query: 349 ---HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
                   +KL+ E+  + +L    +   L  +PK IE +DNS+  G   V  +VV  + 
Sbjct: 358 KRERLDQYEKLNPELKTERLLNKMKEDLRLNVLPKHIECFDNSNFQGKYPVSAIVVFKDA 417

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YR FN+    V+  +D A M   + RR+ +++                  S P 
Sbjct: 418 KPSKKDYRHFNVKT--VEGPNDFATMEEAVFRRYKRMLDEG--------------SSLPQ 461

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQLSAA   LK L +E+++T+I IAK  +     E ++      L L+ R  
Sbjct: 462 LIIIDGGKGQLSAALKSLKTLGIESKVTVIGIAKRLE-----ELYYPGDQYPLYLDKRSE 516

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ LRDEAHRF IT HR +R  K   + L++I GIG      LL +F +VK I  +
Sbjct: 517 TLKIIQHLRDEAHRFGITFHRNQRSRKTFQTELEQIPGIGRTSAEKLLVNFKSVKKIKEA 576

Query: 585 SPETLASIEGISKKIACKIYNHFH 608
           S E L  +  ++ K A  +  +F+
Sbjct: 577 SKEQLMEV--VNTKQAEAVLAYFN 598


>gi|88801846|ref|ZP_01117374.1| excinuclease ABC, C subunit [Polaribacter irgensii 23-P]
 gi|88782504|gb|EAR13681.1| excinuclease ABC, C subunit [Polaribacter irgensii 23-P]
          Length = 598

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 181/625 (28%), Positives = 297/625 (47%), Gaps = 52/625 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVYQ  D    ++Y+GKA NL+KR+ SY    +   +   ++++I +I+ 
Sbjct: 7   LQIKTLPNEPGVYQYFDKNEVIIYIGKAKNLKKRVGSYFSKTHENGKTKVLVTKIVSIKH 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ KPR+NILL+DDK++P+I I  K + P ++  R        
Sbjct: 67  IVVETETDALLLENNLIKKHKPRYNILLKDDKTYPWICI-KKERFPRIFMTRRVIKDGSE 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGPF S+  V   ++ ++  + LR+C       +V   + + CL + +K C G C G  
Sbjct: 126 YFGPFTSIKTVRVLLDLIKELYPLRTCNFDLSYQNVSEGKHKVCLEYHLKNCKGACEGLE 185

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           +   Y   + E +  + G      +K    M     K ++E A   +++L  L + Q+ +
Sbjct: 186 TESHYNNSIKEIRNIIKGNFKESLDKFQEMMFLFAEKMEFEEAQKIKEKLNLLGNYQSKS 245

Query: 236 DSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
             I    N +D FS+  ++            G    + T  +K     T+ ++L  F+ +
Sbjct: 246 TIINPAINNVDVFSIISDETHGYANFLKISNGAIIQSHTTEIKKKLAETDKELLELFIVE 305

Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                      I    + +                +K+TVP  G+K++I+E +  NA   
Sbjct: 306 VRQRFNSISPEIYTPFKVDVGE------------SLKVTVPILGDKKRIVELSERNAKYY 353

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
             ++L        +   + I+    K   L   P+ IE +DNS+I G   V   VV  + 
Sbjct: 354 KLEQLKQVQIVDPDRHVKRIMAQMKKDLRLTVEPRHIECFDNSNIQGTHPVAACVVFKDG 413

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K +YR +N+    V   DD   M  V+ RR+ +L++ ++ L              P 
Sbjct: 414 KPSKKEYRHYNIKT--VVGPDDFGSMEEVVFRRYKRLLEEKQPL--------------PQ 457

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQLS+    L+ L +  +I II IAK  +     E ++      L L+ +  
Sbjct: 458 LIIVDGGKGQLSSGLKSLELLGLRGKIAIIGIAKRLE-----EIYYPDDPIPLYLDKKSE 512

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L   Q LR+EAHRF IT HR +R K A  S L+EI  +G      LL+ F + K +  +
Sbjct: 513 TLKITQYLRNEAHRFGITFHRNKRSKTAVKSELEEIPNVGVQTITTLLRKFKSAKRVKEA 572

Query: 585 SPETLASIEGISKKIACKIYNHFHK 609
           S E L  +E I    A K+Y+++HK
Sbjct: 573 SLEDL-KVE-IGHARAMKVYDYYHK 595


>gi|297624197|ref|YP_003705631.1| excinuclease ABC subunit C [Truepera radiovictrix DSM 17093]
 gi|297165377|gb|ADI15088.1| excinuclease ABC, C subunit [Truepera radiovictrix DSM 17093]
          Length = 618

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 181/610 (29%), Positives = 296/610 (48%), Gaps = 35/610 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y      G V+YVGKA NL+ R++SY  +     +   + ++   + F VT +
Sbjct: 9   LPTKPGCYLFHAPGGEVIYVGKAVNLRSRVRSYFSATAA-QKAQLIRNRAERLEFIVTKS 67

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEAL+LEAN+IKR KP +N+LL+DDKS+P++ +T +   P L   R       +YFGP+
Sbjct: 68  EVEALILEANLIKRFKPHYNVLLKDDKSYPFLKLT-REAYPMLLFTRRVLKDGATYFGPY 126

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  AV K    +   F LR  +    + R +PCL F + RC  PC   +S E Y + V 
Sbjct: 127 PNPGAVRKVQELVGAIFPLRQNSGVPLQKRKKPCLRFHMGRCLAPCIDNVSEEAYAKVVR 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND----SIYNR 241
           + + FL G      E++   M  A  ++D+E A ++RDRL AL  +  ++     +  + 
Sbjct: 187 QVRAFLEGDVAGTAEQLESEMRAAAARQDFELARLYRDRLQALQRLTGYDSDVTRASEDD 246

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-PCP 300
           +D   +    N A +Q      G+  G    FL     ++ A+IL  F+  +Y      P
Sbjct: 247 LDFLGVAQAGNFAMVQLFQMRRGRVVGRDKRFLTNAEGASPAEILERFMADYYGQAMQVP 306

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLST 358
             +L+ +E +   +      ++ G +V++ VP++G+K +++  A  NAH        L  
Sbjct: 307 PLVLVPQEIDL-DVWSAFLSERAGKRVELRVPQRGDKVELMGMAERNAHTGLEAELALLE 365

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  +K+      L   P RIE +D S++MG   V  +VV       K++YRK  + 
Sbjct: 366 RRGEAPGVKELQALVGLESAPYRIEGFDISNLMGTHTVASIVVFEGGRARKSEYRK--MR 423

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   DD   M   + RRF+  + ++                 PD++++DGGKGQLSA
Sbjct: 424 ITGLTRPDDFYAMHQAVYRRFTGALADK--------------LPVPDLLLIDGGKGQLSA 469

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+  LK   +E  + ++ +AK        E    +    +++    P L  +  +RDEAH
Sbjct: 470 ARRALKDAGLE--LPLLGLAKK------QETIIREGAPEILVPETHPALRLLINIRDEAH 521

Query: 539 RFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           R A+  +RK+R      S LD+I GIGP R+  LL  F ++  +  +  + LA I G+ +
Sbjct: 522 RTAVGFNRKQRGAAMTRSVLDDIPGIGPARRDALLARFSSIDELKSAGVDELARIPGMGR 581

Query: 598 KIACKIYNHF 607
             A  +   F
Sbjct: 582 VAAEAVVAFF 591


>gi|71153186|sp|Q8CPL4|UVRC_STAES RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|329730005|gb|EGG66396.1| excinuclease ABC, C subunit [Staphylococcus epidermidis VCU144]
 gi|329736181|gb|EGG72453.1| excinuclease ABC, C subunit [Staphylococcus epidermidis VCU028]
          Length = 594

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 15  VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  EKY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   MN+A+ + D+E A  +RD +  + ++      + +     
Sbjct: 189 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +                         P+ 
Sbjct: 249 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYTFIGQFYSLNQHLLPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+ +I  A  NA              
Sbjct: 309 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK  LL++FG++K +  +S + L    G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 580

Query: 597 KKIACKIYNHFHK 609
           +K+A  + N    
Sbjct: 581 EKVAKNLQNALQN 593


>gi|27467757|ref|NP_764394.1| excinuclease ABC subunit C [Staphylococcus epidermidis ATCC 12228]
 gi|27315301|gb|AAO04436.1|AE016746_226 excinuclease ABC subunit C [Staphylococcus epidermidis ATCC 12228]
          Length = 600

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 21  VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 79

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 80  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 138

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  EKY +   
Sbjct: 139 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 194

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   MN+A+ + D+E A  +RD +  + ++      + +     
Sbjct: 195 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 254

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +                         P+ 
Sbjct: 255 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYTFIGQFYSLNQHLLPKE 314

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+ +I  A  NA              
Sbjct: 315 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 367

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 368 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 426

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 427 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 470

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 471 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 527

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK  LL++FG++K +  +S + L    G+ 
Sbjct: 528 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 586

Query: 597 KKIACKIYNHFHK 609
           +K+A  + N    
Sbjct: 587 EKVAKNLQNALQN 599


>gi|329734437|gb|EGG70750.1| excinuclease ABC, C subunit [Staphylococcus epidermidis VCU045]
          Length = 594

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 287/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 15  VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  EKY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   MN+A+ + D+E A  +RD +  + ++      + +     
Sbjct: 189 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +           +             P+ 
Sbjct: 249 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYIFIGQFYSLNQHLLPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+ +I  A  NA              
Sbjct: 309 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK  LL++FG++K +  +S + L    G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 580

Query: 597 KKIACKIYNHFHK 609
           +K+A  + N    
Sbjct: 581 EKVAKNLQNALQN 593


>gi|160933337|ref|ZP_02080725.1| hypothetical protein CLOLEP_02182 [Clostridium leptum DSM 753]
 gi|156867214|gb|EDO60586.1| hypothetical protein CLOLEP_02182 [Clostridium leptum DSM 753]
          Length = 628

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/614 (28%), Positives = 302/614 (49%), Gaps = 24/614 (3%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY M + +  ++Y+GKA  L+ R+  Y     NH  ++  M+SQ+++  + +T 
Sbjct: 15  LPAAPGVYLMKNASNEIIYIGKAKALKNRVSQYFGSPKNHPPKVRKMVSQVDHFDYILTD 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE ++IK+  P++NILL+DDK + YI +T K     +++ +        Y GP
Sbjct: 75  SEFEALVLECSLIKQHTPKYNILLKDDKGYHYIKVTPK-PYRRIFEAKQKLNDGAEYIGP 133

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           + S  +V+++++  ++ F L +C+    +   R RPCL + IK+C  PC G++S E+Y  
Sbjct: 134 YTSSFSVKQSVDEARKIFKLPTCSRKFPQEIGRGRPCLNYFIKQCCAPCRGKLSEEEYEG 193

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
           +V EA +FL GG+    + + + MN+A    ++E A   RDR++A+  I      +    
Sbjct: 194 YVDEALEFLKGGSVVSVKDMTQQMNEAAENLEFERAARIRDRISAVKRITAKQKVVATKV 253

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             +            A      F F   R            +      + FL+Q+Y  + 
Sbjct: 254 REQDVVAMAQAAGAAAHACVVVFRFSGGRLCDQEEFMLGEIADGKTTRAEFLQQYYAQRT 313

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  + L  E E    L     ++ G  VK+TVP++GE+  +++    NA     Q+   
Sbjct: 314 VPPQVTLDGEVEGKEALRQWLSEKAGRSVKLTVPQKGEQAHLVDMCRRNASEKLAQQAGR 373

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  L +  +   L   P+ IE YD S++ G   V  MV       +K+ YRKF + 
Sbjct: 374 TGREMGALDELGRLLGLAQPPEYIEAYDISNLAGSGNVAGMVAFENGRPLKSAYRKFKIK 433

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               + QDD A M+ V+ RR  +  + ++            F   PD+++LDGGKG ++A
Sbjct: 434 G--FEGQDDYASMQEVISRRLQEYQEKKD--------TGEGFGRLPDLILLDGGKGHVAA 483

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            + VL+   +  +I +  + K  K          + G  + +N        + +++DE H
Sbjct: 484 VRPVLEAFGL--QIPLFGMVKDDKHRTRA---IARDGGEIAINSSRQAFTLVSQIQDEVH 538

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HR+ RK+ A  S L  I GIGP R + LL+SF T+K I+++  + L     +++
Sbjct: 539 RFAIGYHRQTRKRTALSSSLTSIPGIGPSRAKALLKSFKTIKNIAQAELKELEQAPSMNQ 598

Query: 598 KIACKIYNHFHKNT 611
             A  +Y++FH  +
Sbjct: 599 PAAQAVYDYFHPAS 612


>gi|282876406|ref|ZP_06285273.1| excinuclease ABC, C subunit [Staphylococcus epidermidis SK135]
 gi|281295431|gb|EFA87958.1| excinuclease ABC, C subunit [Staphylococcus epidermidis SK135]
          Length = 594

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 15  VPLEPGCYLMKDRNNQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  EKY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   MN+A+ + D+E A  +RD +  + ++      + +     
Sbjct: 189 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +                         P+ 
Sbjct: 249 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYTFIGQFYSLNQHLLPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+ +I  A  NA              
Sbjct: 309 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK  LL++FG++K +  +S + L    G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 580

Query: 597 KKIACKIYNHFHK 609
           +K+A  + N    
Sbjct: 581 EKVAKNLQNALQN 593


>gi|228476249|ref|ZP_04060951.1| excinuclease ABC subunit C [Staphylococcus hominis SK119]
 gi|228269652|gb|EEK11154.1| excinuclease ABC subunit C [Staphylococcus hominis SK119]
          Length = 594

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 177/614 (28%), Positives = 289/614 (47%), Gaps = 43/614 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +++YVGKA  L+ R++SY     H  + T ++S+I N  F VT +
Sbjct: 15  VPFEPGCYLMKDRNDQIIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  +KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDQQKYAQMTR 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   M  A+ K D+E A  +RD +  + ++      + +     
Sbjct: 189 EITDFLNGEDKTILHNLETRMLDASEKLDFERAKEYRDLIQHIHNLTKKQKIMSSDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G         +                         P+ 
Sbjct: 249 DVFGYSVSKGWMCIQVFFIRQGNMIQRDATMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           + + +  ++  +  +   K       I  P +G K+++++ A  NA  +   K       
Sbjct: 309 VHVPKNLDKDIIHSVVDTK-------IVQPARGTKKEMVDLANHNAEVALENKFQLIAKD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+++++                    PD++I+DGGKG +S 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMSG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLENELGLD--IPVAGLRKNDKHQTS-ELLYGANAEVVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD + GIG  RK  LL++FG++K +  +S E L +  G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLQSVLDTVEGIGSKRKTKLLRTFGSIKKMKEASIEDLKAA-GLP 580

Query: 597 KKIACKIYNHFHKN 610
           K++A  +     ++
Sbjct: 581 KRVAENLQYALKED 594


>gi|302035972|ref|YP_003796294.1| excinuclease ABC subunit C [Candidatus Nitrospira defluvii]
 gi|300604036|emb|CBK40368.1| Excinuclease ABC subunit C [Candidatus Nitrospira defluvii]
          Length = 602

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/597 (30%), Positives = 309/597 (51%), Gaps = 28/597 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P  PG Y   +    +LYVGKA  L  R++SY    ++ T +   ++++I ++  
Sbjct: 9   KLDHLPGQPGCYLFRNAKREILYVGKAAVLADRVRSYFQRGSDQTPKTAVLVNEIADLET 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE+N+IKR +PRFNI+LRDDK +PY+ +  K   P L   R        
Sbjct: 69  IVTRSELEALILESNLIKRHRPRFNIVLRDDKQYPYLRLPIKENFPRLSIVRRVQKDGAL 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GP+    A+ +T+  +++ F L +C   +     R C+ F+IKRC  PCTG  S ++Y
Sbjct: 129 YYGPYTPAGALRETLKVIRKAFPLATCEIEIDGRADRACIEFEIKRCMAPCTGNQSRDEY 188

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DS 237
            + V + ++FL G +  L + +  +M +A  +E++E A   R+RL  +            
Sbjct: 189 HQIVKQVRQFLEGRDRELLDSLREDMERAAEREEFEEAARLRNRLFNVERTLEKQRITQV 248

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D   L      A +Q  F   G   G   FF    ++S++ +++   + Q Y  +
Sbjct: 249 STTDQDVIGLARQGTAADLQLLFVRGGLLIGRKDFFWPQSADSSDEELVRSAIEQLYNKE 308

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ +LL    +E  L+E     + G  V++  P++G K +++  A  NA  +    L
Sbjct: 309 GQPPKELLLPTTLDEAPLIERWLSGKRGDSVRLLAPERGTKHQLVLLAEENAAAAIADHL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             E   +    +  +   L  +P+RIE +D S+IMG  +V  +VV  +    K+ YRKF 
Sbjct: 369 RNEALDRQATAELKRLLRLDAVPRRIEGFDISNIMGNQSVASLVVWEDGEAKKSDYRKFR 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    V+  +D A M+  + RR+                      + PD++++DGG GQL
Sbjct: 429 IQT--VEGANDFASMQEAVMRRY----------------GATEDLARPDLILIDGGLGQL 470

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRD 535
           SAA   LK++  +++I I+ +AK   R    E+ F   +   +VL    P  + +QR+RD
Sbjct: 471 SAALEGLKQVG-QDQIPIMGLAK--ARGEKDERIFLPGRKNPIVLRPTSPATHLVQRIRD 527

Query: 536 EAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           EAHRFA+T HRK R KA   S LD+I GIG +R++ LL+ FG+++ ++ ++ + L S
Sbjct: 528 EAHRFALTYHRKLRGKALLSSELDQIAGIGTIRRKRLLKQFGSLQRVATATDDELRS 584


>gi|222474994|ref|YP_002563409.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str.
           Florida]
 gi|255002974|ref|ZP_05277938.1| excinuclease ABC subunit C [Anaplasma marginale str. Puerto Rico]
 gi|222419130|gb|ACM49153.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str.
           Florida]
          Length = 613

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/609 (35%), Positives = 343/609 (56%), Gaps = 32/609 (5%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY+ML   G VLYVGKA +L+KR++SY + N  + RI  M+  I  +   VT +E EAL
Sbjct: 32  GVYKMLGANGLVLYVGKAKDLKKRLRSYYNFNQMSDRILAMVGHITELDVIVTQSEAEAL 91

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVD 129
           LLEA +IK LKP++NI++RDDK +PYIL++ KH+ P + K+R       G  +GPF S  
Sbjct: 92  LLEAQLIKTLKPKYNIIMRDDKFYPYILLS-KHEYPRIVKYRGRKEAGLGKCYGPFISSL 150

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
            V+  I++L++ F LRSC+D+ F  R RPC+ ++++ CS PCT +IS E Y + VH A K
Sbjct: 151 VVKLVISALRKAFQLRSCSDNFFASRDRPCIEYEMRNCSAPCTRKISEEDYAKSVHMAHK 210

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMDCFS 246
            L+G +  L+ ++  +M + +   DYESA+++RDRL    ++    +    +    D  S
Sbjct: 211 VLTGKSKELQRELFDSMRKFSDNLDYESAMVYRDRLQALKSIQECVSFQTEMSCDADFVS 270

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           +Y      C+Q   F  G + G+  +F+   +  + + +L  F+ Q Y+D   P  + + 
Sbjct: 271 IYGRSGTYCLQVISFRGGISYGSQPYFVDDGNYESESDVLGMFMLQVYSD--PPGRVYVD 328

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            E++   ++  +  +    KV I   K  E+ K +  A  +A  +  ++L  +      L
Sbjct: 329 CESDYCEVINAALEELLTRKVDILTAKSHEELKFLRLARNSAMEALNRRLRDKA-LPAEL 387

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++  + F LP+ P+RIE+YDNSHI G    G MVV G++G ++ +YRKF +    V   D
Sbjct: 388 EELAELFGLPNPPERIEVYDNSHISGTHPFGVMVVCGKDGLLRKEYRKFKIQT--VLNGD 445

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D +MM  VL RRFS                    PS PD V++DGG+G +S+A  VL  L
Sbjct: 446 DYSMMHEVLFRRFS-----------------EESPSVPDFVLIDGGRGHISSAIQVLGDL 488

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
                I    +AKG  R+AG E F++  G  + L+    ++ +++++RDEAHRFAIT+HR
Sbjct: 489 G----IPFACMAKGSNRNAGEEVFYLPDGRKICLDPDSKLMLYMRKIRDEAHRFAITSHR 544

Query: 547 KRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
             R +   S  L +I G+G  R+R L+  FG++  + R+  + ++ + GIS K+A +IY 
Sbjct: 545 SSRDRTLSSAVLCDIPGVGSARRRALITYFGSIDGVKRARTDEISKVPGISIKLAQRIYA 604

Query: 606 HFHKNTSHT 614
           +  +  +  
Sbjct: 605 YLKQGMAQP 613


>gi|251810594|ref|ZP_04825067.1| excinuclease ABC subunit C [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805754|gb|EES58411.1| excinuclease ABC subunit C [Staphylococcus epidermidis BCM-HMP0060]
          Length = 600

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 21  VPLEPGCYLMKDRNNQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 79

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 80  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 138

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  EKY +   
Sbjct: 139 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 194

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   MN+A+ + D+E A  +RD +  + ++      + +     
Sbjct: 195 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 254

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +                         P+ 
Sbjct: 255 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYTFIGQFYSLNQHLLPKE 314

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+ +I  A  NA              
Sbjct: 315 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 367

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 368 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 426

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 427 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 470

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 471 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 527

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK  LL++FG++K +  +S + L    G+ 
Sbjct: 528 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 586

Query: 597 KKIACKIYNHFHK 609
           +K+A  + N    
Sbjct: 587 EKVAKNLQNALQN 599


>gi|293366872|ref|ZP_06613548.1| excision endonuclease subunit UvrC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319173|gb|EFE59543.1| excision endonuclease subunit UvrC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 600

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/613 (28%), Positives = 287/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 21  VPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 79

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 80  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKNSGKYFGPY 138

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  EKY +   
Sbjct: 139 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLEKYAQMTK 194

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   MN+A+ + D+E A  +RD +  + ++      + +     
Sbjct: 195 EITDFLNGEDKTILHHLEDRMNKASEQLDFEQAKEYRDMIQHIHNLTKKQKIMSSDNTIR 254

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +           +             P+ 
Sbjct: 255 DVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPLQQTEEEEFYIFIGQFYSLNQHLLPKE 314

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+ +I  A  NA              
Sbjct: 315 VHVPKNLDKDIIQSVVDTK-------IVQPVRGAKKDMINLANHNAEVQLDNKFELIARD 367

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 368 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDYRKYKIK 426

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 427 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 470

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 471 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 527

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK  LL++FG++K +  +S + L    G+ 
Sbjct: 528 HRFAITFHRQTRQKTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQA-GLP 586

Query: 597 KKIACKIYNHFHK 609
           +K+A  + N    
Sbjct: 587 EKVAKNLQNALQN 599


>gi|314936674|ref|ZP_07844021.1| excinuclease ABC subunit C [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655293|gb|EFS19038.1| excinuclease ABC subunit C [Staphylococcus hominis subsp. hominis
           C80]
          Length = 594

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 177/614 (28%), Positives = 289/614 (47%), Gaps = 43/614 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +++YVGKA  L+ R++SY     H  + T ++S+I N  F VT +
Sbjct: 15  VPFEPGCYLMKDRNDQIIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLLVTRTVKKGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  +KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDQQKYAQMTR 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   M  A+ K D+E A  +RD +  + ++      + +     
Sbjct: 189 EITDFLNGEDKTILHNLETRMLDASEKLDFERAKEYRDLIQHIRNLTKKQKIMSSDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G         +                         P+ 
Sbjct: 249 DVFGYSVSKGWMCIQVFFIRQGNMIQRDATMIPLQQTEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           + + +  ++  +  +   K       I  P +G K+++++ A  NA  +   K       
Sbjct: 309 VHVPKNLDKDIIHSVVDTK-------IVQPARGTKKEMVDLANHNAEVALENKFQLIAKD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              VK  DD   MR V+ RR+++++                    PD++I+DGGKG +S 
Sbjct: 421 T--VKGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMSG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VIDVLENELGLD--IPVAGLRKNDKHQTS-ELLYGANAEVVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD + GIG  RK  LL++FG++K +  +S E L +  G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLQSVLDTVEGIGSKRKTKLLRTFGSIKKMKEASIEDLKAA-GLP 580

Query: 597 KKIACKIYNHFHKN 610
           K++A  +     ++
Sbjct: 581 KRVAENLQYALKED 594


>gi|300770941|ref|ZP_07080818.1| excision endonuclease subunit UvrC [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762214|gb|EFK59033.1| excision endonuclease subunit UvrC [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 603

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 180/628 (28%), Positives = 314/628 (50%), Gaps = 49/628 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +++P  PGVYQ  D    ++Y+GKA +L+ R+ SY  + N  + +   ++ +IN I F
Sbjct: 9   ELKRIPHKPGVYQYFDKQDELIYIGKAKDLRNRVGSYFVNDNQLSGKTRVLVRKINRIAF 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+  TE++A LLE N+IK+ KP++N++L+DDK++P+I+I  + + P ++  R        
Sbjct: 69  TIVDTEIDAWLLENNLIKKHKPKYNVMLKDDKTYPWIVI-KQERFPRVFWTRKYIRDGSR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ASV  +   ++ ++  F LR+C      D++   + + CL +QI  C GPC G  
Sbjct: 128 YFGPYASVGMMHTVLDVIRELFPLRTCNLSLTDDNIRTGKFKVCLEYQIGNCKGPCEGYQ 187

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y + + + K  L+G    +  ++ + ++ A    ++E A   + +L  L + Q+ +
Sbjct: 188 SEEDYDQNLDDIKDILNGKIAVVTNRLKQQIDAAVGALNFELAHALKSKLDKLDYYQSKS 247

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                    +D FS+  ++N A +       G    T T  +K   + T+ ++L+  + +
Sbjct: 248 TVVNSSITNVDVFSIASDQNYAFVNFLKVMNGVIIQTQTLEMKRRLDETDVELLALAIPE 307

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA---- 348
                      ++     +               +K TVPK GEKRK+++ +L N     
Sbjct: 308 IRNRFKSTSREIIVPFDMDIE---------GDDNIKFTVPKLGEKRKLLDLSLKNVAYFK 358

Query: 349 --HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
                H ++L+ ++  + IL    K   +  +P+ IE +DNS+I G   V  +VV  +  
Sbjct: 359 KERLLHYERLNPDLKTERILTQMQKDLRMNVLPQHIECFDNSNIQGNFPVSAIVVFKDAK 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR FN+    V   +D A M   + RR+ +L+  ++ L              P +
Sbjct: 419 PSKKDYRHFNVKT--VVGPNDFATMEEAVFRRYRRLLDEDQPL--------------PQL 462

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +I+DGGKGQL AA   L+ L +E ++T+I IAK  +     E ++      L L+ +   
Sbjct: 463 IIIDGGKGQLGAALKSLRLLGIEKQVTVIGIAKRLE-----ELYYPGDQYPLYLDKKSET 517

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ LRDEAHRF IT HR +R +  + S L+ I G+G      LL++F +V+ +  +S
Sbjct: 518 LKIIQHLRDEAHRFGITFHRNQRSRKTFVSELENIPGVGKTSVDKLLKTFKSVRKVKEAS 577

Query: 586 PETLASIEGISKKIACKIYNHFHKNTSH 613
            E L  +  ++ K    +  +F  +T  
Sbjct: 578 DEELKKV--LNLKQVKALREYFQDDTPD 603


>gi|24214866|ref|NP_712347.1| excinuclease ABC subunit C [Leptospira interrogans serovar Lai str.
           56601]
 gi|59799067|sp|Q8F479|UVRC_LEPIN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|24195885|gb|AAN49365.1| excinuclease ABC subunit C [Leptospira interrogans serovar Lai str.
           56601]
          Length = 609

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 181/619 (29%), Positives = 295/619 (47%), Gaps = 31/619 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +   PG Y      G VLYVGKA NL KR++SY+  N+   +   +  +I ++ + 
Sbjct: 13  KIKNLGASPGCYLWKSKKGEVLYVGKAKNLDKRVRSYLKENHPDVKTKVLQREIFDLDWI 72

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EAL+LEA +IK+  PRFN+ L+DDK +PYI ++     P +Y  R        Y
Sbjct: 73  ATGTEKEALILEATLIKKHNPRFNVRLKDDKKYPYICVSLSEPYPMVYVTRKLKDNGDRY 132

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           FGP++ V +  +T++ + R F +R            RPCL F + RC GPC G I  E Y
Sbjct: 133 FGPYSDVKSTRETLDIILRIFPVRKTRQVLPLPRPRRPCLNFDMGRCLGPCQGNIPVEDY 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              + +  +FL G   +L   +   M+ A+ + D+E A  +RD L  + + +     +  
Sbjct: 193 KVIIDQVIQFLEGRKESLVSDLNIKMSNASERLDFEKAARYRDMLQRIQNFREKQTVVSL 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D       ++   +       G+     +F ++   ++ N++IL  F R +Y + 
Sbjct: 253 EGGDEDVIGFARKQDEGQVILLEIRGGRLETKKSFPIQGVLDAENSEILGAFFRDYYLNA 312

Query: 298 P-CPENILLSEEAEETSLLEISFF-KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
              P  I +  + ++  +  I    ++ G++ KI  PK G+KR +++ A  NA    +++
Sbjct: 313 SLVPPCIFIPADIQDEVIPVIDVLQEKTGFRPKIKFPKGGDKRSLLKIAEKNAELGLSER 372

Query: 356 L--STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           L  +        LK+  + F+L  +P  IE YD SH  G   V   V+  E    K  YR
Sbjct: 373 LLATHYRDQTASLKEIQEMFSLERLPHIIECYDISHFQGSQPVASGVMFVEGKPFKQGYR 432

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           K+N+     +  +D  M+  V+ RR  ++I  E                +PD++++DGG 
Sbjct: 433 KYNIQG--YEGINDPGMIHEVISRRLQRIINEE--------------GVFPDLIVIDGGL 476

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            QL+ A     +   E  I ++ +AK  +     E FF  + E  + +M  P +  ++ L
Sbjct: 477 TQLTKACEAAVEAGAEG-IPMVGLAKKRE-----EIFFPGENEPFIFDMNSPGMKLLRHL 530

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRF ++ HR RR K    S + E+  IG  R +LLLQ F   K I  ++ E L  +
Sbjct: 531 RDEAHRFGVSHHRSRRNKETMRSLIQEVPDIGFKRSKLLLQHFSGEKKIEEATKEELLLV 590

Query: 593 EGISKKIACKIYNHFHKNT 611
            GI + +A KI     K  
Sbjct: 591 PGIGENLAEKILKQLQKKE 609


>gi|124008163|ref|ZP_01692861.1| excinuclease ABC, C subunit [Microscilla marina ATCC 23134]
 gi|123986411|gb|EAY26224.1| excinuclease ABC, C subunit [Microscilla marina ATCC 23134]
          Length = 601

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/628 (28%), Positives = 302/628 (48%), Gaps = 51/628 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            +Q+P   GVY+  D    +LYVGKA NL+ R+ SY + +  H  +  +++ QI ++ +T
Sbjct: 8   LKQLPTNAGVYKFFDKNNVLLYVGKAKNLKNRVNSYFNKSAQHNRKTINLVKQIAHVDYT 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  +E +ALLLE N+IK  +P++NILL+DDK++PYILIT+    P L   R     +G +
Sbjct: 68  VVNSEFDALLLENNLIKNYQPKYNILLKDDKTYPYILITN-EPFPKLVVTRKLEKNKGRF 126

Query: 122 FGPFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
           +GPF ++ A+   +  ++     RT  L    +++ +++ + CL + +  C  PC G  S
Sbjct: 127 YGPFTNLKAMNAIVELIRELYTIRTCNLHLSKENIQQNKFKLCLEYHLGNCQAPCEGLQS 186

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            E Y++ +  AK  + G  H +K  +   M     K ++E A   + +LA+L   Q+ + 
Sbjct: 187 EEDYLKDLEHAKHIMKGNIHIVKTYLKEQMLAYAEKLEFEKAESQKQKLASLDKFQSKSL 246

Query: 237 S----IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                     D FS+  ++N + +       G    T +  +    + T  +IL+     
Sbjct: 247 VVNPNKVIDTDVFSIISDENYSYVNFLKIKNGAIIHTQSIEIAKKLDETEEEILTLVAFN 306

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA---- 348
                      +++                   +   T+PK G+K+K++  +  N     
Sbjct: 307 LRDTIGSNAPEIITNLP----------LNISDDRFTNTIPKIGDKKKLLSLSQKNVLYYK 356

Query: 349 --HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
                       +   +++L++  +   +  +P+ IE +DNS+I G   V  MV      
Sbjct: 357 KEKIQQRLLRQGKDKSRVVLEELQQVLRMKELPRHIECFDNSNIQGIYPVASMVFFRNGF 416

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR FN+    V   DD A M+ ++ RR+ +L+  +  L              P +
Sbjct: 417 PYKKGYRHFNIKT--VVGPDDFASMKEIVHRRYKRLLYEKAEL--------------PQL 460

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGGKGQLSAA   LK+L++   ITII IAK  +     E +F +    L ++ + P 
Sbjct: 461 IVIDGGKGQLSAACEALKELDLYGEITIIGIAKKLE-----EIYFPEDSIPLHISKKSPA 515

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  +Q++RDEAHRFAI  HR +R   + +S L+ I G+G      LL+ F TV  ++++S
Sbjct: 516 LKLLQKVRDEAHRFAIEFHRNKRSNDSLHSELEAIEGVGEKTITSLLRHFKTVNNVAQAS 575

Query: 586 PETLASIEGISKKIACKIYNHFHKNTSH 613
            + +A + G  K  A  I  +F      
Sbjct: 576 TQEIAKVVG--KAKANLIRAYFESKEQE 601


>gi|194337093|ref|YP_002018887.1| excinuclease ABC, C subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|229558462|sp|B4SCR5|UVRC_PELPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|194309570|gb|ACF44270.1| excinuclease ABC, C subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 627

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 172/611 (28%), Positives = 287/611 (46%), Gaps = 50/611 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
            +P  PGVYQ  + +GRV+YVGKA NL+ R++SY  +    + +   +++ I +    +T
Sbjct: 23  TLPPSPGVYQFRNSSGRVIYVGKAKNLRNRVRSYFRNQQQLYGKTLVLVTHIADFEVIIT 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL+LE NMIK LKPR+N+ L+DDK++PY++IT+    P +   R       ++FG
Sbjct: 83  SSEVEALILENNMIKELKPRYNVNLKDDKTYPYLVITN-EPFPRILISRQRRKDGSTWFG 141

Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+     +   ++ +   F +RSC      +++   + + CL + I +C GPC G  S E
Sbjct: 142 PYTESRQLHSILDLIGSIFPVRSCKFRLSEENIATKKYKVCLDYHIHKCKGPCEGRQSEE 201

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y+  + E  + L G    +   +   M     +  +E A   + +L +L         +
Sbjct: 202 EYLLMIAEITRLLKGKTSTMIRSLTSAMQLFARELKFERAAEIKMQLESLKRYAERQKVV 261

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D F++   +   C        G+  G+   ++   +  T++ + +  + ++Y 
Sbjct: 262 AGDGLDRDVFAVATGEEDGCGVVFKIREGKLLGSQRIYMNNVTGETDSGLQARVMEKYYL 321

Query: 296 D--KPCPENILLSEEAEETSL--------LEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
           +  +  P+ ILL E                +     Q    ++  VP+ GEK  ++E   
Sbjct: 322 ETLELLPDEILLQESLGADEEETLRALFSEKEREEAQEKKNIRFLVPQIGEKAHLVEMCR 381

Query: 346 INAHRSHTQKLSTEISHQMILKD------FTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
            NA     + L  +       ++        +   LP +P+RIE +DNSH+ G   V  M
Sbjct: 382 QNARHHLEEYLIQKQKRGEAAREHYGLTALKELLHLPKLPQRIECFDNSHLQGTDYVSSM 441

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           +   +    K  YRKF    N  +  DD A M  V+ RR+S  +               S
Sbjct: 442 ICFEKGKPKKADYRKF--KINSFEGSDDYAAMEEVIRRRYSGSL--------------SS 485

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519
              WPD++++DGGKGQ++ A   L  L +   I II +AK  +     E F  +  +   
Sbjct: 486 KLPWPDLIVVDGGKGQVNIAFQTLNALGLS--IPIIGLAKRIE-----EIFTPQARDPFN 538

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578
           L    P L  +Q++RDEAHRFAIT HRK R  +   + L  I GIG      LL+ FG+V
Sbjct: 539 LPKTSPALKLLQQMRDEAHRFAITYHRKLRSERMLQTELTTIAGIGEKTAFKLLERFGSV 598

Query: 579 KMISRSSPETL 589
             +++++ E L
Sbjct: 599 DAVAQATLEEL 609


>gi|45657622|ref|YP_001708.1| excinuclease ABC subunit C [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59799053|sp|Q72RI9|UVRC_LEPIC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|45600862|gb|AAS70345.1| nucleotide excision repair subunit C [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 609

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 181/619 (29%), Positives = 295/619 (47%), Gaps = 31/619 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +   PG Y      G VLYVGKA NL KR++SY+  N+   +   +  +I ++ + 
Sbjct: 13  KIKNLGASPGCYLWKSKKGEVLYVGKAKNLDKRVRSYLKENHPDVKTKVLQREIFDLDWI 72

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EAL+LEA +IK+  PRFN+ L+DDK +PYI ++     P +Y  R        Y
Sbjct: 73  ATGTEKEALILEATLIKKHNPRFNVRLKDDKKYPYICVSLSEPYPMVYVTRKLKDNGDRY 132

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           FGP++ V +  +T++ + R F +R            RPCL F + RC GPC G I  E Y
Sbjct: 133 FGPYSDVKSTRETLDIILRIFPVRKTRQVLPLPRPRRPCLNFDMGRCLGPCQGNIPVEDY 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              + +  +FL G   +L   +   M+ A+ + D+E A  +RD L  + + +     +  
Sbjct: 193 KVIIDQVIQFLEGRKESLVSDLNIKMSNASERLDFEKAARYRDMLQRIQNFREKQTVVSL 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D       ++   +       G+     +F ++   ++ N++IL  F R +Y + 
Sbjct: 253 EGGDEDVIGFARKQDEGQVILLEIRGGRLETKKSFPIQGVLDAENSEILGAFFRDYYLNA 312

Query: 298 P-CPENILLSEEAEETSLLEISFF-KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
              P  I +  + ++  +  I    ++ G++ KI  PK G+KR +++ A  NA    +++
Sbjct: 313 SLVPPCIFIPADIQDEVIPVIDVLQEKTGFRPKIKFPKGGDKRSLLKIAEKNAELGLSER 372

Query: 356 L--STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           L  +        LK+  + F+L  +P  IE YD SH  G   V   V+  E    K  YR
Sbjct: 373 LLATHYRDQTASLKEIQEMFSLERLPHIIECYDISHFQGSQPVASGVMFVEGKPFKQGYR 432

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           K+N+     +  +D  M+  V+ RR  ++I  E                +PD++++DGG 
Sbjct: 433 KYNIRG--YEGINDPGMIHEVISRRLQRIINEE--------------GVFPDLIVIDGGL 476

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            QL+ A     +   E  I ++ +AK  +     E FF  + E  + +M  P +  ++ L
Sbjct: 477 TQLTKACEAAVEAGAEG-IPMVGLAKKRE-----EIFFPGENEPFIFDMNSPGMKLLRHL 530

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRF ++ HR RR K    S + E+  IG  R +LLLQ F   K I  ++ E L  +
Sbjct: 531 RDEAHRFGVSHHRSRRNKETMRSLIQEVPDIGFKRSKLLLQHFSGEKKIEEATKEELLLV 590

Query: 593 EGISKKIACKIYNHFHKNT 611
            GI + +A KI     K  
Sbjct: 591 PGIGENLAEKILKQLQKKE 609


>gi|33865780|ref|NP_897339.1| excinuclease ABC subunit C [Synechococcus sp. WH 8102]
 gi|81574546|sp|Q7U6U0|UVRC_SYNPX RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|33632950|emb|CAE07761.1| Excinuclease ABC subunit C (UvrC) [Synechococcus sp. WH 8102]
          Length = 652

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/630 (29%), Positives = 298/630 (47%), Gaps = 29/630 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            +++P  PG Y M D   R+LYVGK+ +L+ R++SY  S +  + RI  M  Q+  I F 
Sbjct: 15  LKEIPPEPGCYLMRDGEDRILYVGKSKSLRSRVRSYFRSRHDLSPRIRLMTRQVCEIEFI 74

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--G 119
           VT +E EAL LE+N+IK  +P FN+LL+DDK +PY+ IT     P ++  R         
Sbjct: 75  VTDSEAEALALESNLIKNHQPHFNVLLKDDKKYPYLCITWSEAYPRIFITRRRRFRSPLD 134

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R F LR     +   RT  CL + I RC G C  +I+SE 
Sbjct: 135 RFYGPYVDVGLLRRTLFLVKRVFPLRQRPRPLHPDRT--CLNYSIGRCPGVCQEKITSED 192

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   + +      G +  L+  +   MN+   + D+ESA   RD+L  L  +        
Sbjct: 193 YHRTLRKVAMVFQGRSDELQRLLDEQMNRYAERLDFESAARVRDQLQGLDQLTADQKMSL 252

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +L  +  LA +Q      G+  G   +     +      IL   + + Y+
Sbjct: 253 PDSSVSRDVLALACDDRLAAVQLFQMRAGKLVGRLGYTADASA-LAPGLILQRVIEEHYS 311

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+     +  LLE    +Q   KV+I  PKQ +K  +IE    NA    
Sbjct: 312 QVDAVEVPPELLVQHALPQQQLLEDWLTEQRERKVQIHCPKQRQKADLIELVQRNAEFEL 371

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +    +    +  +D  +   +P  P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 372 LRAKQGQEQQALATEDLAQLLEMPTPPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 431

Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENL--------NFHPKKQEYSFPS 462
           RK+ +  + +++    D   M  ++ RRF +  + + +               Q      
Sbjct: 432 RKYKIRSSSIQSGHSDDFMAMAEIMRRRFRRWARAKADGVDVGALRHKGGSALQTDGLND 491

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPDVV++DGGKGQLSA    L++L++   + + S+AK  +     E F   + + L    
Sbjct: 492 WPDVVMIDGGKGQLSAVMEALRELDLHEDLNVCSLAKQRE-----EVFLPGESQPLESEP 546

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA++ HR++R  +   S L +I G+GP R + LL  F ++  I
Sbjct: 547 DQLGVALLRRLRDEAHRFAVSFHRQQRGERMKRSRLSDIPGVGPKRVKDLLAHFHSIDAI 606

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNT 611
             +S + L+   G+   +A  I+  FH   
Sbjct: 607 QMASVDLLSKAPGVGTALARDIHGFFHPAE 636


>gi|325290076|ref|YP_004266257.1| Excinuclease ABC subunit C [Syntrophobotulus glycolicus DSM 8271]
 gi|324965477|gb|ADY56256.1| Excinuclease ABC subunit C [Syntrophobotulus glycolicus DSM 8271]
          Length = 587

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 192/616 (31%), Positives = 303/616 (49%), Gaps = 47/616 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY M +   R++YVGKA  L+ R+KSY H + H  +   ++SQI +  + VT +
Sbjct: 11  LPAKPGVYLMKNNKNRIIYVGKAKILKNRVKSYFHGS-HDQKTQQLVSQIADFEYIVTSS 69

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E+EAL+LE N+IK+  PR+NI+L+DDK++PY+L+T   K P +   R+ +   G YFGP+
Sbjct: 70  ELEALVLECNLIKKYYPRYNIMLKDDKTYPYLLLT-SEKHPRILVTRNVNRKMGKYFGPY 128

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++T   L R F LR C          PCL F I +C GPC  +++ E+Y + + 
Sbjct: 129 PNATAAKETARLLNRVFPLRKCTHIPHE----PCLYFHIGQCLGPCINQLNPEQYQDVLD 184

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           +   FL G   ++   +   MN A+    +E+A  +RD + A+  I    +   N     
Sbjct: 185 KITSFLKGNQKDIIRWLEEKMNSASANLQFENAKEYRDLIQAIQTISEKQNITLNDFRNR 244

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  S   +  L CIQ  +F  G+      F           +    FL Q+Y +K    +
Sbjct: 245 DFVSYRFSDELLCIQIFYFRQGKLVARDNFLFPY--YEEPEEAFVSFLLQYYDNKNKIPD 302

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
            +   E +   L          + + +TVPK+G+  +II+ A  NA        + +   
Sbjct: 303 EICLPENKSPLL---------NHLLPVTVPKRGKTLEIIKLATNNAETVLQERTSLEKIK 353

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                + L+   +   +   P+ IE +D S I G + VG MV   +    ++ YRKFN+ 
Sbjct: 354 TEKTLLALQGLGELLDID-PPQIIEAFDISSISGTNIVGGMVRFVQGKPCRSHYRKFNID 412

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            + V   DD + M+ V+ RR+ +L+                    PD+++LDGGKGQ++A
Sbjct: 413 SSSV--NDDTSSMKQVVFRRYDRLLSEN--------------HQIPDLILLDGGKGQITA 456

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L  L +   I +  + K  + +          G  + L         IQ++++E H
Sbjct: 457 ALNSLDVLGLS--IPLAGMVKNEEHTTR--TLINADGAEIDLAKYPDAFRLIQQIQEEVH 512

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR++R K    S LD I G+GP RKR LL + G++  I +SS E    I G+ +
Sbjct: 513 RFAITFHRQKRIKDLTSSELDLIPGVGPKRKRDLLLNLGSLANIKQSSVEDFRKI-GLPE 571

Query: 598 KIACKIYNHFHKNTSH 613
            IA  IY++FH  T  
Sbjct: 572 NIALAIYSYFHGETGS 587


>gi|255010267|ref|ZP_05282393.1| excinuclease ABC subunit C [Bacteroides fragilis 3_1_12]
          Length = 620

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 172/616 (27%), Positives = 305/616 (49%), Gaps = 38/616 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY    +   +   ++S+I +IR+ V  
Sbjct: 31  NLPEKPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKEHQPGKTRVLVSKIADIRYIVVN 90

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 91  SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 149

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++   ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E+
Sbjct: 150 YSHAPSMHAVLDLIKHLYPLRTCSLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 209

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    + + + + M +   +  +E A   +++ A + + ++ ++ + 
Sbjct: 210 YLKNISEIKEILKGNTQEISKMLYQQMQELAAEMKFEEAQKVKEKYALIENYRSKSEVVS 269

Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           + +    ++  +      A I       G      TF  K     T  ++L+  + +   
Sbjct: 270 SVLHNIDVFSIEEDGEKSAFINYLHITNGAINQAFTFEYKKKLNETKEELLTLGIIEMRE 329

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K     I++  + E           Q G K K+        ++     +  A      
Sbjct: 330 RYKSASREIIVPFDIEMELNNVTFTIPQRGDKKKLLELSLLNVKQYKADRMKQAE----- 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           KL+ E     ++K+  ++  L  +P +IE +DNS+I G  AV   VV  +    KN YRK
Sbjct: 385 KLNPEQRSMRLMKEIQQELHLDRLPMQIECFDNSNIQGTDAVAACVVFKKAKPSKNDYRK 444

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +N+    V   DD A M+ V+ RR+ ++++ E                 PD++I DGGKG
Sbjct: 445 YNIKT--VVGADDYASMKEVVRRRYQRVLEEE--------------SPLPDLIITDGGKG 488

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+   + V+++L ++  I I  +AK  K     E  F    + + +    P+   +++++
Sbjct: 489 QMEVVRQVMEELQLD--IPIAGLAKDRKHRTS-EVLFGFPPQTIGIKQHSPLFRLLEQIQ 545

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR +R K    S LD I GIG   K LLL+ F +VK I  +S E +A++ 
Sbjct: 546 DEVHRFAITFHRDKRSKRQVSSALDSIKGIGEKTKTLLLKEFKSVKRIKEASMEEVATV- 604

Query: 594 GISKKIACKIYNHFHK 609
            I +  A  +    + 
Sbjct: 605 -IGESKAKIVKEGLNN 619


>gi|67459304|ref|YP_246928.1| excinuclease ABC subunit C [Rickettsia felis URRWXCal2]
 gi|75536266|sp|Q4UL10|UVRC_RICFE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|67004837|gb|AAY61763.1| Excinuclease ABC subunit C [Rickettsia felis URRWXCal2]
          Length = 642

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 232/648 (35%), Positives = 345/648 (53%), Gaps = 55/648 (8%)

Query: 1   MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+ +  PE  GVY+M D+  +V+YVGKA NL+KR+ +Y   ++  ++   MI+    +
Sbjct: 11  IKSKLIDAPERCGVYRMFDVNKQVIYVGKAKNLKKRLTNY-IKSDLDNKTLRMIANTCFL 69

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            +++T +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I +   H  P L K+R  +   
Sbjct: 70  EYSITNSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGKTLNS 129

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G +FGPFAS   V  T+  LQ+ F LRSC D+ F  RTRPCL ++IKRC  PC G+I+ E
Sbjct: 130 GKFFGPFASSTEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V + K FL G    L+E +++ M + + +  +E A   RDR+ ALS++Q      
Sbjct: 190 DYRDLVAQVKDFLQGRTKELQENLSKKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++       C++   +  GQ  G   +F  +   ST  ++L YFL QFY  
Sbjct: 250 DIVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309

Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I+++ E  +   ++E         K+ I +P  G K K+++ A INA  S  Q 
Sbjct: 310 QQVPAEIIINHEINDKENVIEAIKKINNITKLNIIIPISGGKAKLVQNAAINALFSLEQY 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L     +Q I+ +  + F L  I +RIEIYDNSHI G  AVG MVV G+ GF K +YR F
Sbjct: 370 LKKFAKNQEIMLEIKELFGLSEISERIEIYDNSHIQGKFAVGVMVVAGKAGFDKKEYRVF 429

Query: 416 N--------------------------------LHPNDVKTQDDCAMMRMVLERRFSQLI 443
           +                                + P D    DD  M+R VL RR ++L 
Sbjct: 430 SLSSRNSSLSSHASPLSSRNLIAGSSSYFLDPVVKPRDDIVGDDYEMLRQVLTRRLTRLK 489

Query: 444 KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503
                               P ++I+DGG+G L   + V+ K   E  I  + ++KG  R
Sbjct: 490 NE--------------PHKLPSLMIIDGGRGHLGVVKEVMDKF--EMNIPFVCMSKGVDR 533

Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEING 562
           +AG+E+F +   E   L+   PI+ ++Q LRDEAH FAI  HR  R +A   S LD+I G
Sbjct: 534 NAGLEQFHMTGKEVFTLDKNLPIMKYLQILRDEAHNFAIKNHRLGRSRAIKLSSLDDIEG 593

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           IG  RK+ LL  FG+ K +  ++ + L  + GI+K +A  I+   HK+
Sbjct: 594 IGETRKKALLHYFGSYKAVCDATIDELTKVNGINKSLAEMIFRTLHKS 641


>gi|298528048|ref|ZP_07015452.1| excinuclease ABC, C subunit [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511700|gb|EFI35602.1| excinuclease ABC, C subunit [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 605

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 179/610 (29%), Positives = 282/610 (46%), Gaps = 37/610 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
           +S   P  PGVY M D   R++YVGKA NL+ R+ SY  S+   + +   M+ ++  + +
Sbjct: 6   NSSDFPRDPGVYLMKDEQNRIIYVGKAKNLRSRVSSYFRSSRDPSPKTRVMLGRVLQVDY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T +E EALLLEA++IK+ +PR+NI+LRDDK +    +      PAL   R +      
Sbjct: 66  ITTTSEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRLDKSRPYPALELTRSARRDGSV 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF S  A  +T+  + R F+LR C    FR+R RPCL   I+RC GPC  ++S+E+Y
Sbjct: 126 YFGPFTSAAAARETMKVINRLFYLRKCGHKKFRNRVRPCLQHFIRRCPGPCCLDVSTEEY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              +   + FLSG +  L + + ++M +A+ + D+E A + RD++ A+         ++ 
Sbjct: 186 SREIRRLEMFLSGRSAELIKGMEKDMQEASRELDFEKAALLRDQIEAVKQTTKSQSVVFP 245

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL---SYFLRQFY 294
               MD F+  + +    I   F   G+   +  FF        + ++    +  L QFY
Sbjct: 246 GTGDMDVFAPVYVQGGMGIGVLFVRQGKVLDSKNFFWPEHHPENDQELQDTLASLLSQFY 305

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    +L  E      L     +    KV++   +    + ++  A  N  +    
Sbjct: 306 GPDSFIPEKILLPEKIHDPALLHLLMEYRKGKVRLVGARGESLKGLLNIARQNCEQHA-- 363

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                               L   P+RIE  D SH  G +    +V        K  YR 
Sbjct: 364 ----RDRRDAGTPFLAGVMGLEREPERIECIDVSHHAGRNTRMGVVTFVAGEPHKKDYRI 419

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +NL    V   DD   MR  ++R                  +  S   WPD++++DGGKG
Sbjct: 420 YNLPS--VSPGDDYQAMREFIKR------------------RSRSSSPWPDLLLVDGGKG 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAG---MEKFFVKKGEALVLNMRDPILYFIQ 531
           QL   Q  L+    E    + SIAK   R+ G    + +   +   L L    P L ++Q
Sbjct: 460 QLGTVQKALQDAGQEGLFALASIAKAETRARGGAQDQVYLPGRKYPLSLKPASPELLYLQ 519

Query: 532 RLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R+RDEAHRFA+ + R   R+K+  S L++I G+GP +   L + FG+++ I  +S E L 
Sbjct: 520 RIRDEAHRFALGSMRNSLRRKSLQSDLEKIPGLGPKKVEALWKHFGSLQSILGASREELM 579

Query: 591 SIEGISKKIA 600
            + G   + A
Sbjct: 580 QVPGFGPETA 589


>gi|325281346|ref|YP_004253888.1| UvrABC system protein C [Odoribacter splanchnicus DSM 20712]
 gi|324313155|gb|ADY33708.1| UvrABC system protein C [Odoribacter splanchnicus DSM 20712]
          Length = 601

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/624 (29%), Positives = 314/624 (50%), Gaps = 48/624 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
              ++P  PGVYQ  D +G ++Y+GKA NL+ R+ SY++ +N +++   ++++I ++R+ 
Sbjct: 11  KISELPSSPGVYQYFDSSGVIIYIGKAKNLKNRVLSYLNQSNQSNKTRILVNKITDLRYI 70

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  +E +ALLLE N+IK+ KPR+NILL+DDKS+P+I I  K   P ++  R        Y
Sbjct: 71  VVNSEQDALLLENNLIKKYKPRYNILLKDDKSYPWICI-KKEPYPRVFLTRRFVHDGSEY 129

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
           FGP+ S       I+ ++  F LR+C       +V+ +R + CL + I  C GPC G+I 
Sbjct: 130 FGPYTSGKFAHVLISLIKSLFKLRTCKLALNTKAVYNNRFKVCLEYHIGNCLGPCIGKIQ 189

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            E+Y EF+ + +  L G   ++ + + R MN       +E A   ++ L A+ + Q+ + 
Sbjct: 190 EEEYDEFISQVRNILKGNLSSVIQVMTRKMNSYAESLHFEEANRMKEALEAIKNYQSKST 249

Query: 237 S---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
                 +  D FS   ++  A +       G      T  L+   E     +L++ + + 
Sbjct: 250 IVRTTIHDTDVFSYLEDEKYAYVNFLRIVHGAVIQVHTVELEKKIEEDKEALLAFAIYEI 309

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----- 348
                     ++     +  L            V+  +P++G+K+++++ +  N      
Sbjct: 310 RQLVNSNSKEIIVPFYPDVQLE----------GVQYVIPQRGDKKQLLDLSERNVSYFRL 359

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
            R   + L  E S   ILK    +  LP +P R+E +DNS+I G + V   VV  +    
Sbjct: 360 DRERQRNLKKEDSSFNILKTIKLELKLPTLPHRMECFDNSNIQGTNPVASCVVFIDGKPA 419

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K +YRKF++    V   DD A M  ++ RR+ +++                    PD+++
Sbjct: 420 KKEYRKFHVKT--VVGADDFASMEEIIFRRYKRVLDEG--------------LELPDLIV 463

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQL +A   LKKL++  ++ I+ +AK  +     E +F +  +  +L      L 
Sbjct: 464 IDGGKGQLHSAVNSLKKLDLYGKVPILGLAKQME-----EIYFPEDKDPYLLAKNSMALK 518

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +  +RDEAHRF IT HRK R+K+   S L +I GIG   + +LL  F +V  I + S E
Sbjct: 519 TLMHIRDEAHRFGITFHRKLREKSQINSILGDIKGIGEATETILLHEFKSVSNIKQKSIE 578

Query: 588 TLASIEGISKKIACKIYNHFHKNT 611
            LA +  I KK A  I+ +FH+ T
Sbjct: 579 ELAKV--IGKKKAQLIHEYFHQET 600


>gi|56808206|ref|ZP_00365982.1| COG0322: Nuclease subunit of the excinuclease complex
           [Streptococcus pyogenes M49 591]
 gi|94988536|ref|YP_596637.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS9429]
 gi|94990413|ref|YP_598513.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS10270]
 gi|94992359|ref|YP_600458.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS2096]
 gi|94994335|ref|YP_602433.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS10750]
 gi|209559373|ref|YP_002285845.1| excinuclease ABC subunit C [Streptococcus pyogenes NZ131]
 gi|306827426|ref|ZP_07460712.1| excision endonuclease subunit UvrC [Streptococcus pyogenes ATCC
           10782]
 gi|119367845|sp|Q1JBZ4|UVRC_STRPB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367846|sp|Q1JLX6|UVRC_STRPC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367847|sp|Q1JH25|UVRC_STRPD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367848|sp|Q1J6U4|UVRC_STRPF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226698805|sp|B5XLD8|UVRC_STRPZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|94542044|gb|ABF32093.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS9429]
 gi|94543921|gb|ABF33969.1| Excinuclease ABC subunit C [Streptococcus pyogenes MGAS10270]
 gi|94545867|gb|ABF35914.1| Excinuclease ABC subunit C [Streptococcus pyogenes MGAS2096]
 gi|94547843|gb|ABF37889.1| Excinuclease ABC subunit C [Streptococcus pyogenes MGAS10750]
 gi|209540574|gb|ACI61150.1| Putative excinuclease ABC [Streptococcus pyogenes NZ131]
 gi|304430371|gb|EFM33394.1| excision endonuclease subunit UvrC [Streptococcus pyogenes ATCC
           10782]
          Length = 598

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/624 (27%), Positives = 290/624 (46%), Gaps = 43/624 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+KR++SY   ++ T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT ++ EALLLE N+I++  P++NI L+DDKS+P++ IT+    P L   R      G Y
Sbjct: 67  VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + +     + C  + + +C            + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             + + K FL+G +  + E +   M  A+ +  +E A  +RD ++ ++ ++     +   
Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + E  +E  +  I   K          PK+GEK++++  A  NA     +    
Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDIKKTSGAIENLGQLLRIDKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR VL RR+S++ K                   P+++I+DGG G
Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++K  +   I +  + K  K     +  F    E + L  R    + + R++
Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFA+T HR+ RRK +  S LD I+G+GP RK+LLL+ F T+  I+ ++ E + ++ 
Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574

Query: 594 GISKKIACKIYNHF--HKNTSHTP 615
           GI K +   I      +KN   +P
Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598


>gi|56416629|ref|YP_153703.1| excinuclease ABC subunit C [Anaplasma marginale str. St. Maries]
 gi|81359188|sp|Q5PB81|UVRC_ANAMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56387861|gb|AAV86448.1| excinuclease ABC subunit C [Anaplasma marginale str. St. Maries]
          Length = 613

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/609 (35%), Positives = 343/609 (56%), Gaps = 32/609 (5%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY+ML   G VLYVGKA +L+KR++SY + N  + RI  M+  I  +   VT +E EAL
Sbjct: 32  GVYKMLGANGLVLYVGKAKDLKKRLRSYYNFNQMSDRILAMVGHITELDVIVTQSEAEAL 91

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVD 129
           LLEA +IK LKP++NI++RDDK +PYIL++ KH+ P + K+R       G  +GPF S  
Sbjct: 92  LLEAQLIKTLKPKYNIIMRDDKFYPYILLS-KHEYPRIVKYRGRKEAGLGKCYGPFISSL 150

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
            V+  I++L++ F LRSC+D+ F  R RPC+ ++++ CS PCT +IS E Y + VH A K
Sbjct: 151 VVKLVISALRKAFQLRSCSDNFFASRDRPCIEYEMRNCSAPCTRKISEEDYAKSVHMAHK 210

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMDCFS 246
            L+G +  L+ ++  +M + +   DYESA+++RDRL    ++    +    +    D  S
Sbjct: 211 VLTGKSKELQRELFDSMRKFSDNLDYESAMVYRDRLQALKSIQECVSFQTEMSCDADFVS 270

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           +Y      C+Q   F  G + G+  +F+   +  + + +L  F+ Q Y+D   P  + + 
Sbjct: 271 IYGRSGTYCLQVISFRGGISYGSQPYFVDDGNYESESDVLGMFMLQVYSD--PPGRVYVD 328

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            E++   ++  +  +    KV I   K  E+ K +  A  +A  +  ++L  +      L
Sbjct: 329 CESDYCEVINAALERLLTRKVDILTAKSHEELKFLRLARNSAMEALNRRLRDKA-LPAEL 387

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++  + F LP+ P+RIE+YDNSHI G    G MVV G++G ++ +YRKF +    V   D
Sbjct: 388 EELAELFGLPNPPERIEVYDNSHISGTHPFGVMVVCGKDGLLRKEYRKFKIQT--VLNGD 445

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D +MM  VL RRFS                    PS PD V++DGG+G +S+A  VL  L
Sbjct: 446 DYSMMHEVLFRRFS-----------------EESPSVPDFVLIDGGRGHISSAIQVLGDL 488

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
                I    +AKG  R+AG E F++  G  + L+    ++ +++++RDEAHRFAIT+HR
Sbjct: 489 G----IPFACMAKGSNRNAGEEVFYLPDGRKICLDPDSKLMLYMRKIRDEAHRFAITSHR 544

Query: 547 KRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
             R +   S  L +I G+G  R+R L+  FG++  + R+  + ++ + GIS K+A +IY 
Sbjct: 545 SSRDRTLSSAVLCDIPGVGSARRRALITYFGSIDGVKRARTDEISKVPGISIKLAQRIYA 604

Query: 606 HFHKNTSHT 614
           +  +  +  
Sbjct: 605 YLKQGMAQP 613


>gi|21910285|ref|NP_664553.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS315]
 gi|28895862|ref|NP_802212.1| excinuclease ABC subunit C [Streptococcus pyogenes SSI-1]
 gi|25453317|sp|Q8K7L7|UVRC_STRP3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|21904480|gb|AAM79356.1| putative excinuclease ABC (subunit C) [Streptococcus pyogenes
           MGAS315]
 gi|28811112|dbj|BAC64045.1| putative excinuclease ABC subunit C [Streptococcus pyogenes SSI-1]
          Length = 598

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/624 (27%), Positives = 290/624 (46%), Gaps = 43/624 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+KR++SY   ++ T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT ++ EALLLE N+I++  P++NI L+DDKS+P++ IT+    P L   R      G Y
Sbjct: 67  VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + +     + C  + + +C            + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKVYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             + + K FL+G +  + E +   M  A+ +  +E A  +RD ++ ++ ++     +   
Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + E  +E  +  I   K          PK+GEK++++  A  NA     +    
Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDIKKTSGAIENLGQLLKIDKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR VL RR+S++ K                   P+++I+DGG G
Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++K  +   I +  + K  K     +  F    E + L  R    + + R++
Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFA+T HR+ RRK +  S LD I+G+GP RK+LLL+ F T+  I+ ++ E + ++ 
Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574

Query: 594 GISKKIACKIYNHF--HKNTSHTP 615
           GI K +   I      +KN   +P
Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598


>gi|227537545|ref|ZP_03967594.1| excision endonuclease subunit UvrC [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242597|gb|EEI92612.1| excision endonuclease subunit UvrC [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 603

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 179/628 (28%), Positives = 314/628 (50%), Gaps = 49/628 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +++P  PGVYQ  D    ++Y+GKA +L+ R+ SY  + N  + +   ++ +IN I F
Sbjct: 9   ELKRIPHKPGVYQYFDKQDELIYIGKAKDLRNRVGSYFVNDNQLSGKTRVLVRKINRIAF 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+  TE++A LLE N+IK+ KP++N++L+DDK++P+I+I  + + P ++  R        
Sbjct: 69  TIVDTEIDAWLLENNLIKKHKPKYNVMLKDDKTYPWIVI-KQERFPRVFWTRKYIKDGSR 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ASV  +   ++ ++  F LR+C      D++   + + CL +QI  C GPC G  
Sbjct: 128 YFGPYASVGMMHTVLDVIRELFPLRTCNLSLTDDNIRTGKFKVCLEYQIGNCKGPCEGYQ 187

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y + + + K  L+G    +  ++ + ++ A    ++E A   + +L  L + Q+ +
Sbjct: 188 SEEDYDQNLDDIKDILNGKIAVVTNRLKQQIDTAVGALNFELAHALKSKLDKLDYYQSKS 247

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                    +D FS+  +++ A +       G    T T  +K   + T+ ++L+  + +
Sbjct: 248 TVVNSSITNVDVFSIASDQSYAFVNFLKVMNGVIIQTQTLEMKRRLDETDVELLALAIPE 307

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA---- 348
                      ++     +               +K TVPK GEKRK+++ +L N     
Sbjct: 308 IRNRFKSASREIIVPFDMDIE---------GDDNIKFTVPKLGEKRKLLDLSLKNVAYFK 358

Query: 349 --HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
                H ++L+ ++  + IL    K   +  +P+ IE +DNS+I G   V  +VV  +  
Sbjct: 359 KERLLHYERLNPDLKTERILTQMQKDLRMNVLPQHIECFDNSNIQGNFPVSAIVVFKDAK 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR FN+    V   +D A M   + RR+ +L+  ++ L              P +
Sbjct: 419 PSKKDYRHFNVKT--VVGPNDFATMEEAVFRRYRRLLDEDQPL--------------PQL 462

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +I+DGGKGQL AA   L+ L +E ++T+I IAK  +     E ++      L L+ +   
Sbjct: 463 IIIDGGKGQLGAALKSLRLLGIEKQVTVIGIAKRLE-----ELYYPGDQYPLYLDKKSET 517

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ LRDEAHRF IT HR +R +  + S L+ I G+G      LL++F +V+ +  +S
Sbjct: 518 LKIIQHLRDEAHRFGITFHRNQRSRKTFVSELENIPGVGKTSVDKLLKTFKSVRKVKEAS 577

Query: 586 PETLASIEGISKKIACKIYNHFHKNTSH 613
            E L  +  ++ K    +  +F  +T  
Sbjct: 578 DEELKKV--LNLKQVKALREYFQDDTPD 603


>gi|71903430|ref|YP_280233.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS6180]
 gi|92058699|sp|Q48TS8|UVRC_STRPM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|71802525|gb|AAX71878.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS6180]
          Length = 598

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/624 (27%), Positives = 290/624 (46%), Gaps = 43/624 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+KR++SY   ++ T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT ++ EALLLE N+I++  P++NI L+DDKS+P++ IT+    P L   R      G Y
Sbjct: 67  VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + +     + C  + + +C            + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             + + K FL+G +  + E +   M  A+ +  +E A  +RD ++ ++ ++     +   
Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + E  +E  +  I   K          PK+GEK++++  A  NA     +    
Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDIKKTSGAIENLGQLLKIDKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR VL RR+S++ K                   P+++I+DGG G
Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++K  +   I +  + K  K     +  F    E + L  R    + + R++
Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFA+T HR+ RRK +  S LD I+G+GP RK+LLL+ F T+  I+ ++ E + ++ 
Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574

Query: 594 GISKKIACKIYNHF--HKNTSHTP 615
           GI K +   I      +KN   +P
Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598


>gi|314933343|ref|ZP_07840708.1| excinuclease ABC subunit C [Staphylococcus caprae C87]
 gi|313653493|gb|EFS17250.1| excinuclease ABC subunit C [Staphylococcus caprae C87]
          Length = 594

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/613 (27%), Positives = 285/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++S+I N  F VT +
Sbjct: 15  VPLEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLIVTRTVKKGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  +KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLDKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   M +A+   D+E A  +RD +  + ++      +       
Sbjct: 189 EITDFLNGEDKTIIHNLESRMTKASEDLDFEQAKEYRDMIQHIHNLTKKQKIMSTDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +                         P+ 
Sbjct: 249 DVFGYNVSKGWMCVQVFFIRQGNMIKRDATMIPIQQSEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+++++ A  NA              
Sbjct: 309 VHVPKNLDKDMIYSVVDTK-------IVQPSRGAKKEMVDLANHNAEVQLENKFELIARD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTVKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+++GIG  RK  LL++FG++K +  ++ + L    G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDVDGIGAKRKTTLLRTFGSIKKMKEANLDDLKGA-GLP 580

Query: 597 KKIACKIYNHFHK 609
           +K+A  +      
Sbjct: 581 EKVAKNLQKALQN 593


>gi|73662958|ref|YP_301739.1| excinuclease ABC subunit C [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|92058697|sp|Q49WR3|UVRC_STAS1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|72495473|dbj|BAE18794.1| excinuclease ABC subunit C [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 595

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 169/611 (27%), Positives = 276/611 (45%), Gaps = 35/611 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +++YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 15  VPIEPGCYLMKDRNDQIIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLIVTRTVKKGSGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC   +  EKY E   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRK----CDKMPDKLCLYYHIGQCLGPCVYPVDLEKYAEMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   + + M +++   D+E A  +RD +  + ++        +     
Sbjct: 189 EITDFLNGEDKTILHNLEQKMQESSESLDFERAKEYRDLIQHIHNLNKKQKITSSDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   CIQ  F   G         +                         P+ 
Sbjct: 249 DVFGYSISKGWMCIQVFFIRQGNMIKRDATMIPLQQTEEEEFYTFIGQFYDLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           + + +   +  +  +   K                    E  L N           E   
Sbjct: 309 VHVPKHLNKELIQSVVDTKIVQPLKGKKKDMVDLANHNAEVTLEN---KFELIAKDESRT 365

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              +++      +   P RIE +DNS+I G + V  MV   +    K  YRK+ +    V
Sbjct: 366 VKAIEELGDVMGI-QTPIRIEAFDNSNIQGVNPVSAMVSFIDGKPNKKGYRKYKIKT--V 422

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD   MR V+ RR+++++                    PD++I+DGGKG +S    V
Sbjct: 423 DGPDDYKSMREVVRRRYTRVLNEG--------------SPLPDLIIVDGGKGHMSGVIDV 468

Query: 483 LK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           L+ +L ++  I +  + K  K     E  + ++ E + +       Y +QR++DE HRFA
Sbjct: 469 LENELGLD--IPVAGLRKNDKHQTS-EILYGEQAEVVPMKKNSQPFYLLQRIQDEVHRFA 525

Query: 542 ITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT HR+ R+K    S LD ++GIG  RK  LL++FG++K +  +S E L +  G+ + +A
Sbjct: 526 ITFHRQTRQKTGLQSVLDTVDGIGAKRKTKLLRTFGSIKRMKEASVEDLKN-SGLPQNVA 584

Query: 601 CKIYNHFHKNT 611
             +++    N+
Sbjct: 585 ENLHHALSNNS 595


>gi|296504995|ref|YP_003666695.1| excinuclease ABC subunit C [Bacillus thuringiensis BMB171]
 gi|296326047|gb|ADH08975.1| excinuclease ABC subunit C [Bacillus thuringiensis BMB171]
          Length = 574

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 174/602 (28%), Positives = 289/602 (48%), Gaps = 43/602 (7%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA  L+ R++SY   + H  +   ++ +I +  + VT + +EAL+LE 
Sbjct: 1   MKDKQGTVIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVGEIVDFEYIVTSSNLEALILEL 59

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N+IK+  P++NI L+DDK++P+I IT   K P L   R+    +G YFGP+ +  +  +T
Sbjct: 60  NLIKKYDPKYNIQLKDDKTYPFIKIT-AEKQPRLLITRNVKKDKGKYFGPYPNAQSAHET 118

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
              L R + LR C +       + CL + + +C  PC  E++ E+  E V E  KFL+GG
Sbjct: 119 KKLLDRMYPLRKCTNMP----DKVCLYYHMGQCLAPCVKEVTEEQNKEIVDEIIKFLNGG 174

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNK 251
           +  ++ ++   M +A+ K ++E A   RD++A +  I      I +     D F    +K
Sbjct: 175 HKEVRSELEIKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDLVDRDVFGYAVDK 234

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
              C+Q  F   G+             E     +         +    P+ I++    + 
Sbjct: 235 GWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFYENSSHFKPKEIVVPGSIDS 294

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLSTEISHQMILK 367
             +       +   +V+ T PK+G+K+ ++E A  NA  +           E      + 
Sbjct: 295 ELV-------ERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERDEERTIKAVD 347

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
              K+  +     RIE +DNS+I G + V  M+   +    K +YRK+ +    V+  DD
Sbjct: 348 HLGKQLGIETP-YRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIKT--VQGPDD 404

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KL 486
              MR V+ RR+++ +K                   PD++I+DGGKG L+AA  +L+ +L
Sbjct: 405 YESMREVVRRRYTRALKEN--------------SPLPDLIIIDGGKGHLAAASDILENEL 450

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
            +   I +  + K  K             E ++L       Y +QR++DE HRFAIT HR
Sbjct: 451 GLY--IPMAGLVKDDKHKTSH-LIIGDPPEPVMLERNSQEFYLLQRIQDEVHRFAITFHR 507

Query: 547 KRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +   K+   S LD+I GIG  RK++LL+ FG++K +  +S E      G+ K +A  IY 
Sbjct: 508 QLHGKSVIQSALDDIPGIGDKRKKVLLKHFGSLKKMKEASIEEFVEA-GMPKNVAETIYT 566

Query: 606 HF 607
           + 
Sbjct: 567 YL 568


>gi|149369500|ref|ZP_01889352.1| excinuclease ABC, C subunit [unidentified eubacterium SCB49]
 gi|149356927|gb|EDM45482.1| excinuclease ABC, C subunit [unidentified eubacterium SCB49]
          Length = 597

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 174/625 (27%), Positives = 298/625 (47%), Gaps = 50/625 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +P  PGVYQ  D   ++LY+GKA NL+KR++SY +  +   +   ++ +I +I+ 
Sbjct: 8   LQVSTLPSTPGVYQYYDKDDKLLYIGKAKNLKKRVQSYFNKEHDHAKTRILVRKIKSIKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ +P++NILL+DDK++P+I I    + P ++  R        
Sbjct: 68  IVVETETDALLLENNLIKKYQPKYNILLKDDKTYPWICI-KNERFPRVFPTRRLIKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ +   +   +  ++  + LR+C      D +   + + CL + +  C GPC G  
Sbjct: 127 YFGPYTNFKTINALLELIKGLYPLRNCNFDLAEDKIRNGKYKVCLEYHLGNCLGPCEGLY 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S + Y E +   +  L G          + M+Q   +  +E A   ++++ AL + Q+ +
Sbjct: 187 SEKFYNENIAAIRNILKGNFKESLHLFKKQMHQFADELLFEEAQKVKEKIDALENYQSKS 246

Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
             ++     +D FS+  +++ A +      +G    + T  +K   + T+ ++L   + +
Sbjct: 247 MVVHPTITNVDVFSIISDESYAYVNYLQVSYGAIIRSHTLEIKKKLDETDKELLEMSVLE 306

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                      + +                         PK G+K+KI++ ++ NA    
Sbjct: 307 IRQRFNSLSKEIYTPFKISIETGVKMHI-----------PKVGDKKKILDLSIRNAKYYR 355

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            ++         +   + I+    K   L   P+ IE +DNS+I G + V   VV     
Sbjct: 356 LERFKQSKIVDPDRHEKRIMAQMKKDLRLSVEPRHIECFDNSNIQGTNPVAACVVFKNGK 415

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YRKF++    V+  DD A M  V+ RR+ +L++ ++ L              P +
Sbjct: 416 PSKKDYRKFHIKT--VEGPDDFASMEEVVYRRYKRLVEEKQPL--------------PQL 459

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +I+DGGKGQLS++   L  L +  +I II IAK  +     E F+      L L+ +   
Sbjct: 460 IIIDGGKGQLSSSLKALDDLGLRGKIAIIGIAKRLE-----ELFYPDDPIPLYLDKKSET 514

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ+LR+EAHRF IT HR+ R K A  + L+ I GIG      LL  F + K I  +S
Sbjct: 515 LKIIQQLRNEAHRFGITFHRQLRSKEALNTALETIPGIGEKTVIELLTKFKSHKRIGTAS 574

Query: 586 PETLASIEGISKKIACKIYNHFHKN 610
            + LA + G S+  A K+  +F  +
Sbjct: 575 FDELAEVIGASR--AKKVKTYFQDS 597


>gi|86131052|ref|ZP_01049651.1| excinuclease ABC, C subunit [Dokdonia donghaensis MED134]
 gi|85818463|gb|EAQ39623.1| excinuclease ABC, C subunit [Dokdonia donghaensis MED134]
          Length = 598

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 178/623 (28%), Positives = 291/623 (46%), Gaps = 50/623 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PG+YQ  D   ++LYVGKA NL+KR+ SY +  +   RI  M+ +I  ++ 
Sbjct: 8   LQLKTLPTSPGIYQYYDKNEKLLYVGKAKNLKKRVLSYFNKTHDNGRIRTMVKKIYEMKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE ++IK  +PR+N+LL+DDKS+P+I I    + P ++  R        
Sbjct: 68  IVVETETDALLLENSLIKEYQPRYNVLLKDDKSYPWICI-KNERFPRVFPTRRLIKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S+  V   ++ ++  + LR+C   + +      + + CL + +  C G C  + 
Sbjct: 127 YFGPYTSMKTVRTLLDLIKNLYKLRTCNYDLSKEKVDAGKFKVCLEYHLGNCEGACENKQ 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S ++Y E +   ++ + G   +   +    M       ++E A   +++L  L   Q+ +
Sbjct: 187 SEQEYHEHIEHIRQIVKGDFKDSLARFREKMKAHAEAMEFEDAQRIKEKLDILEGYQSKS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D FS+  ++    +       G    + T  LK   + T+ ++L   + +
Sbjct: 247 TVVNPKISNVDVFSIISDEGYGYVNFLQISHGAIIKSHTLELKKQLDETDKELLELGIIE 306

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                      +                   G + KITVPK G+K++I+E +  NA    
Sbjct: 307 IQQRFDHNSKEIYVPFP-----------VDLGSRFKITVPKLGDKKRILELSERNAKYYR 355

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            ++         +     I+        L   P+ IE +DNS+I G + V   VV     
Sbjct: 356 MERFKQTKIVDPDRHTNRIMAQMKVDLRLSEEPRHIECFDNSNIQGTNPVAACVVFKNGK 415

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K+ YRKFN+    V+  DD A M  V+ RR+ +L+   E L              P +
Sbjct: 416 PSKSDYRKFNIKT--VEGPDDFASMEEVVFRRYKRLLNEGEPL--------------PQL 459

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +I+DGGKGQLS+    L  L +  +I II IAK  +     E F+      L L+ +   
Sbjct: 460 IIVDGGKGQLSSGVKALDDLGLRGKIAIIGIAKRLE-----ELFYPGDSIPLYLDKKSET 514

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ LR+EAHRF IT HR +R   A  + LD I GIG      LL+ + +V  +  +S
Sbjct: 515 LKIIQHLRNEAHRFGITFHRNQRSNAALGTELDTIKGIGEKTIVDLLKHYRSVSKVKTAS 574

Query: 586 PETLASIEGISKKIACKIYNHFH 608
            ++L  +  I    A  IYNH+H
Sbjct: 575 KKSLTEV--IGPAKATIIYNHYH 595


>gi|190571502|ref|YP_001975860.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|229557874|sp|B3CMV5|UVRC_WOLPP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|190357774|emb|CAQ55228.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 605

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 236/619 (38%), Positives = 354/619 (57%), Gaps = 27/619 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +  P+  GVY+M+    +VLY+GKA NL+ R+  Y+   N + RI  MISQ+  +   
Sbjct: 8   QIKSSPQSCGVYKMIGDKSKVLYIGKAKNLKSRLSDYLQFENLSERIRVMISQVIKVEIF 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGS 120
           +T  E+EALLLEA +IK LKP +NILLRD KS+PYI I+ KH  P + K+R      +  
Sbjct: 68  ITENEIEALLLEAQLIKSLKPSYNILLRDGKSYPYITIS-KHDYPRIAKYRGKFKKNEFH 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF S  AV+ TI SLQ+ F LR C+D  F    RPCL +Q+KRCS PC  +I+ + Y
Sbjct: 127 YYGPFPSAAAVKNTILSLQKAFLLRVCSDQYFSSTKRPCLEYQVKRCSAPCVDKITKDDY 186

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238
            + V +A+  L G N  ++ ++   M + + + +YE A ++RDRL  L  IQ      S 
Sbjct: 187 CKSVKQAQDTLLGRNKEVQRQLFSTMEKCSREMNYELAAVYRDRLKFLQQIQMQPMDFSF 246

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297
               D FS+    +LACI    F    N G+  +F++  S+ +N +ILS FL   Y    
Sbjct: 247 EEDADFFSVVREADLACIGVLSFRDKGNYGSIPYFIENCSDHSNDEILSTFLVNLYNPVN 306

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  I + +  ++  ++E + +      +K+   K  ++R ++     N+  S  QKL+
Sbjct: 307 TPPAQIYVPDFIKDKEIIEQALYALTQKSIKVLHAKNSKERDLLNFIYNNSQHSLEQKLT 366

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              ++   L++  K F+LP+IPKRIE+YDNSHI G   VG M+V G+ GF+K++Y+KF +
Sbjct: 367 DYRNNLEKLEELRKIFSLPNIPKRIEVYDNSHISGNQQVGVMIVAGQEGFLKSEYKKFTI 426

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                 + DD  MMR VL RRFS  IK+                  PD +++DGG G +S
Sbjct: 427 KEE--ISGDDYKMMREVLTRRFSGNIKD----------------IIPDFLLIDGGPGHVS 468

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
             Q VL+ LN+  ++    +AKG  R+AG E+F+V   E   L     ++ ++Q LR+EA
Sbjct: 469 IVQNVLEILNI--KVPFACMAKGHDRNAGNERFYVPDREEFTLASDSKVMLYLQLLRNEA 526

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT+HRK+R K  + S L EI+G+G  RK+ L+  FG+V+ IS++S   + ++ GIS
Sbjct: 527 HRFAITSHRKKRDKQFFASQLSEISGVGSKRKKALMSHFGSVENISKASLAEIQNVPGIS 586

Query: 597 KKIACKIYNHFHKNTSHTP 615
           K +A  I  H + +   TP
Sbjct: 587 KGLAEIILQHVN-SKKGTP 604


>gi|15675060|ref|NP_269234.1| excinuclease ABC subunit C [Streptococcus pyogenes M1 GAS]
 gi|71910604|ref|YP_282154.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS5005]
 gi|24212616|sp|Q99ZU3|UVRC_STRP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|13622214|gb|AAK33955.1| excinuclease ABC (subunit C) [Streptococcus pyogenes M1 GAS]
 gi|71853386|gb|AAZ51409.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS5005]
          Length = 598

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/624 (27%), Positives = 290/624 (46%), Gaps = 43/624 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+KR++SY   ++ T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT ++ EALLLE N+I++  P++NI L+DDKS+P++ IT+    P L   R      G Y
Sbjct: 67  VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + +     + C  + + +C            + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             + + K FL+G +  + E +   M  A+ +  +E A  +RD ++ ++ ++     +   
Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASKEMAFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYTDAEEDFLTYMGQFYQDKQHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + E  +E  +  I   K          PK+GEK++++  A  NA     +    
Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDIKKTSGAIENLGQLLRIDKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR VL RR+S++ K                   P+++I+DGG G
Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++K  +   I +  + K  K     +  F    E + L  R    + + R++
Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFA+T HR+ RRK +  S LD I+G+GP RK+LLL+ F T+  I+ ++ E + ++ 
Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574

Query: 594 GISKKIACKIYNHF--HKNTSHTP 615
           GI K +   I      +KN   +P
Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598


>gi|223984564|ref|ZP_03634694.1| hypothetical protein HOLDEFILI_01989 [Holdemania filiformis DSM
           12042]
 gi|223963469|gb|EEF67851.1| hypothetical protein HOLDEFILI_01989 [Holdemania filiformis DSM
           12042]
          Length = 587

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 179/616 (29%), Positives = 299/616 (48%), Gaps = 49/616 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y M D    ++YVGKA  L+ R+  Y     H ++ T ++S I +  + 
Sbjct: 9   KLQTLPLEPGCYLMKDKNDTIIYVGKAKKLKNRVNQYFVGA-HNYKTTKLVSNIVDFDYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGS 120
           VT +E EAL+LE N+IK+ +PR+NI+  DD S+PYI +T     P L   RD+    +  
Sbjct: 68  VTSSEKEALVLEINLIKKYRPRYNIMFMDDSSYPYIKLT-HEAYPTLRVVRDAKKDRKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF    A  +T+  L + + LR       +   + CL + I +C GPC   +  E Y
Sbjct: 127 YYGPFPDASAAHQTMKLLNQLYPLRK----CDKMPKKLCLYYHIGQCLGPCELNVDPEIY 182

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   +  +FL G   +L  ++   MN A  +  +E A  +RD + ++ HI +       
Sbjct: 183 KEISEKITRFLRGDVKDLVSELKSKMNAAVEELAFEKAREYRDLITSIEHITDKQQVQVE 242

Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+ Y +K    IQ  F   G+          T       + L  FL Q+Y + 
Sbjct: 243 DNKDRDVFACYADKGYLAIQGFFIRSGKLLERQLSL--TPLYGDPEEELISFLMQYYQNH 300

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHT 353
           P P+ +++  E +  +L E+   K          P +G ++K+++ A  NA     +   
Sbjct: 301 PLPQEVIVPLELDIEALQEVITCKL-------IQPVKGYRKKLLDMASNNAKTNLLQKFE 353

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
                  + +  ++   +K  +P +  RIEI+DNSHI G   V  MVV  +    KN YR
Sbjct: 354 VMERQNETTEESMRQLAQKLRIPGLS-RIEIFDNSHISGAFTVAGMVVFEDGLPCKNDYR 412

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
            F LH        D   M+ VL RR+ +L+                   +PD++++DGG 
Sbjct: 413 LFKLHTE----NSDVDSMKEVLYRRYFRLLNEG--------------GRFPDLLLVDGGL 454

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q+ AA+ +L  L+++  I I  + K  K          ++ E + +    P+ + + R+
Sbjct: 455 TQIEAAKEILGSLDLD--IPICGLVKNDKHQTAS--LMNERLEIVDVEPGSPLFFLLTRM 510

Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           +DE HRFAI+ HRK R+KA   S LDEI+G+G +RK+ L+ +F + K +  ++ E +A +
Sbjct: 511 QDEVHRFAISYHRKLRQKAQTKSILDEIDGVGEVRKKKLMSTFKSFKRLKEATIEEIAQV 570

Query: 593 EGISKKIACKIYNHFH 608
             + +++A +I++  H
Sbjct: 571 --VPQEVAERIFDTLH 584


>gi|269958956|ref|YP_003328745.1| excinuclease ABC subunit C [Anaplasma centrale str. Israel]
 gi|269848787|gb|ACZ49431.1| excinuclease ABC subunit C [Anaplasma centrale str. Israel]
          Length = 613

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/604 (35%), Positives = 342/604 (56%), Gaps = 32/604 (5%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY+ML   G VLYVGKA +L+KR++SY + N  + RI  M+  I  +   VT +E EAL
Sbjct: 32  GVYKMLGANGLVLYVGKAKDLKKRLRSYYNFNQMSDRILAMVGHITELDVIVTQSEAEAL 91

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVD 129
           LLEA +IK LKP++NI++RDDK +PYIL++ KH+ P + K+R       G  +GPF S  
Sbjct: 92  LLEAQLIKTLKPKYNIIMRDDKFYPYILLS-KHEYPRIVKYRGRKEAGLGKCYGPFISSL 150

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
            V+  I++L++ F LRSC+D+ F  R RPC+ ++++ CS PCT +IS E Y + VH A K
Sbjct: 151 VVKLVISALRKAFQLRSCSDNFFASRDRPCIEYEMRNCSAPCTRKISEEDYAKSVHMAHK 210

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMDCFS 246
            L+G +  L+ ++  +M + +   DYESA+++RDRL    ++    +    +    D  S
Sbjct: 211 VLTGKSKELQRELFDSMRKFSDNLDYESAMVYRDRLQALKSIQECVSFQTEMSCDADFVS 270

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           +Y      C+Q   F  G + G+  +F+   +  + + +L  F+ Q Y+D   P  + + 
Sbjct: 271 IYGRSGTYCLQVISFRGGISYGSQPYFVDDGNYESESDVLGMFMLQVYSD--PPGRVYVD 328

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            E++   ++  +  +    KV I   K  E+ K +  A  +A  +  ++L  +      L
Sbjct: 329 CESDYCEVINAALERLLTRKVDILTAKSHEELKFLRLARNSAMEALNRRLRDKA-LPAEL 387

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++  + F LP+ P+RIE+YDNSHI G    G MVV G++G ++ +YRKF +    V   D
Sbjct: 388 EELAELFGLPNPPERIEVYDNSHISGTHPFGVMVVCGKDGLLRKEYRKFKIQT--VLNGD 445

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D +MM  VL RRFS                    PS PD V++DGG+G +S+A  VL  L
Sbjct: 446 DYSMMHEVLFRRFS-----------------EESPSVPDFVLIDGGRGHISSAIQVLGDL 488

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
                I    +AKG  R+AG E F++  G  + L+    ++ +++++RDEAHRFAIT+HR
Sbjct: 489 G----IPFACMAKGSNRNAGEEVFYLPDGRKICLDPDSKLMLYMRKIRDEAHRFAITSHR 544

Query: 547 KRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
             R +   S  L +I G+G  R+R L+  FG++  + R+  + ++ + GIS K+A +IY 
Sbjct: 545 SSRDRTLSSAVLCDIPGVGSARRRALITYFGSIDGVKRARTDEISKVPGISIKLAQRIYA 604

Query: 606 HFHK 609
           +  +
Sbjct: 605 YLKQ 608


>gi|154494271|ref|ZP_02033591.1| hypothetical protein PARMER_03622 [Parabacteroides merdae ATCC
           43184]
 gi|154085955|gb|EDN85000.1| hypothetical protein PARMER_03622 [Parabacteroides merdae ATCC
           43184]
          Length = 601

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 179/610 (29%), Positives = 300/610 (49%), Gaps = 44/610 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG YQ  D  G ++YVGKA NL++R+ SY +  + +++   ++ QI +I++ V  T
Sbjct: 15  IPESPGCYQYFDEKGTIIYVGKAKNLKRRVSSYFNKEHDSNKTRVLVKQIRDIKYFVVDT 74

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E +ALLLE N+IK+ +PR+N+LL+DDK++P I++      P +++ R+       Y+GP+
Sbjct: 75  EEDALLLENNLIKQYRPRYNVLLKDDKTYPSIVV-KNEYFPRVFQTRNIVRDGSRYYGPY 133

Query: 126 ASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            S+   +  +  L+  + LR+C        + + R + CL + IK C GPC G  + E+Y
Sbjct: 134 PSIYTAKVMLQMLKELYPLRTCKYPLTPESIAKGRYKVCLEYHIKHCKGPCEGLQTLEEY 193

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            + + E K+ L G    + + +   M +   +  +E A   +++   + + ++ +     
Sbjct: 194 QQNISEIKEILRGNISQISKHLYEEMQKLAGELRFEEAQKIKEKYEVIENYRSKSTVVTP 253

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           + + +D FSL  N+N A I       G      TF  K   + +  ++LS  + +     
Sbjct: 254 MLHNIDVFSLAENENSAYINYLHIGNGAIVQAYTFEYKKRLDESKEELLSLGIIEMRNRF 313

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
                 ++     +  L            V ITVP++G+K+K++E + +N  +    KL 
Sbjct: 314 KSTAREIIVPFPLDIELE----------NVSITVPQRGDKKKLVELSEMNVKQYKVDKLK 363

Query: 358 T------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                  E     +LK+  +   LP +P  IE +DNS+I G  AV   VV       K  
Sbjct: 364 QAEKLNPEQRSTRLLKEIQETLHLPKLPAHIECFDNSNIQGSDAVAACVVFKMAKPSKKD 423

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRK+N+    V   DD A M+ V+ RR+ + I  E                 PD++I DG
Sbjct: 424 YRKYNIKT--VVGPDDYASMKEVVRRRYQRAIVEE--------------TPLPDLIITDG 467

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQ+   + V++   +   I I  +AK  K     E  F    E + + ++  +  F  
Sbjct: 468 GKGQMEVVREVIQD-ELHLDIPIAGLAKDGKHRTS-ELLFGFPPETIGMPIQSFMFKFFT 525

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           +++DE HRFAIT H+ +R K+   S LD I GIG   K LLL+ F +VK I  +  + L 
Sbjct: 526 QIQDEVHRFAITFHKDKRSKSQTKSELDTIKGIGEKTKVLLLRHFKSVKRIREAGFDELK 585

Query: 591 SIEGISKKIA 600
            + G +K  A
Sbjct: 586 EVIGEAKTKA 595


>gi|50914154|ref|YP_060126.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS10394]
 gi|73920384|sp|Q5XCC0|UVRC_STRP6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|50903228|gb|AAT86943.1| Excinuclease ABC subunit C [Streptococcus pyogenes MGAS10394]
          Length = 598

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 171/624 (27%), Positives = 290/624 (46%), Gaps = 43/624 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+KR++SY   ++ T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT ++ EALLLE N+I++  P++NI L+DDKS+P++ IT+    P L   R      G Y
Sbjct: 67  VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + +     + C  + + +C            + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             + + K FL+G +  + E +   M  A+ +  +E A  +RD ++ ++ ++     +   
Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + E  +E  +  I   K          PK+GEK++++  A  NA     +    
Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      +++  +   +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDIKKTSGAIENLGQLLRIDKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR VL RR+S++ K                   P+++I+DGG G
Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++K  +   I +  + K  K     +  F    E + L  R    + + R++
Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVSLPRRSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFA+T HR+ RRK +  S LD I+G+GP RK+LLL+ F T+  I+ ++ E + ++ 
Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574

Query: 594 GISKKIACKIYNHF--HKNTSHTP 615
           GI K +   I      +KN   +P
Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598


>gi|326790748|ref|YP_004308569.1| UvrABC system protein C [Clostridium lentocellum DSM 5427]
 gi|326541512|gb|ADZ83371.1| UvrABC system protein C [Clostridium lentocellum DSM 5427]
          Length = 578

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 180/580 (31%), Positives = 300/580 (51%), Gaps = 28/580 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++PE PGVY M +  G+++YVGKA NL+ R++ Y  S+ NH+ ++  M+  I +  +
Sbjct: 7   ELKRLPEKPGVYLMKNDLGQIIYVGKAINLKNRVRQYFQSSKNHSIKVKKMVQHIVSFEY 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +EVEAL+LE N+IK+  P++NI L+DDK +PYI I  +   P +   R        
Sbjct: 67  IITRSEVEALVLECNLIKKYDPKYNIRLKDDKQYPYIKINTQDAFPRMRVVRQMKKDGAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    A+ + ++ ++ T+ LR+C  ++ +   + R CL + I +C+ PCTG I  +
Sbjct: 127 YFGPYTDAAAMWEVVDIIKNTWPLRTCTRNLPKDIGKERACLNYHIGKCNAPCTGLIDEQ 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E + E   FL+G    + +K+  +M  A+    +E A   RD++ A+  ++   ++ 
Sbjct: 187 AYGEMIEEVISFLNGKYKEVIKKLQADMIVASESLQFEKAAQLRDQIQAVMKLEQKQNAT 246

Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            + M   D  +   +     +Q  F   G+  G   F+LK   +    ++   F+ QFY 
Sbjct: 247 MSSMLDQDVIAFAKSPQDTLVQVYFVRKGKMVGREHFYLKDTEDEVIEEVFRDFIVQFYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----R 350
           +    P+ I++     E  +LE    ++ G KV++  P +G K  ++E A  NA     +
Sbjct: 307 NATFIPKEIVIERIPNEKEVLESYLAEKKGSKVQLITPVKGTKHGLMELASKNAELTLGQ 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              Q    +   +  L    +   L  +P R+E YD S+  G  +VG MVV       K+
Sbjct: 367 FGDQMKKEQERTEGALAQLQEAIGLEKLPYRMEAYDISNTQGVQSVGGMVVFEGGKPKKS 426

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF +    ++  +D   +  VL+RRF++L + +E         E SF   PD++++D
Sbjct: 427 DYRKFKIKS--IQGPNDYGSLEEVLDRRFNRLKEEQE---------ENSFSKMPDLLMMD 475

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ+S A+ +L+K  +   I +  + K  +       F   +GE +VL         I
Sbjct: 476 GGKGQVSVAEKMLEKYGLA--IPVCGMVKDDRHRTRGLLF---QGEEIVLPSGSEGFKLI 530

Query: 531 QRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKR 569
            RL+DE HRF+I  H+K R KA   S LDEI G+G  RK+
Sbjct: 531 TRLQDEVHRFSIEYHKKLRSKAQVQSLLDEIKGVGKERKK 570


>gi|19746037|ref|NP_607173.1| excinuclease ABC subunit C [Streptococcus pyogenes MGAS8232]
 gi|24212606|sp|Q8P163|UVRC_STRP8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|19748204|gb|AAL97672.1| excinuclease ABC (subunit C) [Streptococcus pyogenes MGAS8232]
          Length = 598

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 171/624 (27%), Positives = 288/624 (46%), Gaps = 43/624 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+KR++SY   ++ T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT ++ EALLLE N+I++  P++NI L+DDKS+P++ IT+    P L   R      G Y
Sbjct: 67  VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + +     + C  + + +C            + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             + + K FL+G +  + E +   M  A+ +  +E A  +RD ++ ++ ++     +   
Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + E  +E  +  I   K          PK+GEK++++  A  NA     +    
Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      + +      +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDIKKTSGAIDNLGHLLGINKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR VL RR+S++ K                   P+++I+DGG G
Sbjct: 414 FKVKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++K  +   I +  + K  K     +  F    E + L  R    + + R++
Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFA+T HR+ RRK +  S LD I+G+GP RK+LLL+ F T+  I+ ++ E + ++ 
Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574

Query: 594 GISKKIACKIYNHF--HKNTSHTP 615
           GI K +   I      +KN   +P
Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598


>gi|197122985|ref|YP_002134936.1| excinuclease ABC subunit C [Anaeromyxobacter sp. K]
 gi|229557970|sp|B4UGB5|UVRC_ANASK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|196172834|gb|ACG73807.1| excinuclease ABC, C subunit [Anaeromyxobacter sp. K]
          Length = 707

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/669 (29%), Positives = 311/669 (46%), Gaps = 74/669 (11%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIR 59
             +++P  PG Y M D AG V+YVGKA +L+ R++SY        R  +  +   + ++ 
Sbjct: 8   KLDELPAEPGCYLMKDRAGEVVYVGKASSLRSRVRSYFDPGRGDQRAFVALLDELLGDLE 67

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-- 117
             VT +E EA+LLE  +IK+ +PRFN+ LRDDK F  + + ++H  P L   R       
Sbjct: 68  VIVTRSEKEAVLLENELIKKHRPRFNVRLRDDKDFIVLKLDERHPYPRLEVRRAREKRQP 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              YFGP++S  ++ +T+  + R F LR+C+D VF HR RPC+L+QI RC  PC  E+++
Sbjct: 128 GARYFGPYSSASSIRETLRMVNRHFQLRTCSDHVFDHRKRPCILYQIHRCPAPCVYEVAA 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E+Y + V +A +FL G    L E++   M+ A     +E A   RD+L A+         
Sbjct: 188 EEYRQSVEDAVEFLEGREGELVERLRGRMDGAAAGLRFEEAARLRDQLQAVERSLEKQRV 247

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D   LY       +Q      G+ +         + E  + +ILS FL  +Y
Sbjct: 248 LMADRGDRDVIGLYREGPDLVVQVLSMRAGKLQDAQAH-PFREQEFPDEEILSSFLSLYY 306

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ IL+  E  +   L     ++ G +V++  P++G K  +++ A  NA +    
Sbjct: 307 EHTDAPDEILVPLEPVQAEALADVLSERRGRRVRLLTPQRGAKADLLDVARRNAEQGFRA 366

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               +   +  L    +   L   P+ +E YD S   G  AVG  V + +    K  YR+
Sbjct: 367 WHEHDERREQALAAVERALHLARPPRWMECYDISTFQGALAVGSGVSMKDGEPDKANYRR 426

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V  QDD AM+  V+ RR  + +   +                PD++++DGGKG
Sbjct: 427 YKVK--AVAGQDDFAMLHEVITRRLRRALGEGQ---------------LPDLIVIDGGKG 469

Query: 475 QLSAAQGVLKKLNVENR----------ITIISIAK------------------------- 499
           QL+AA    K L V  R          + ++ +AK                         
Sbjct: 470 QLNAALAAAKDLGVPTRPSPGNPDAPFVELVGLAKSRLVDGPSLGTARVVGRRGRRAEAR 529

Query: 500 -------------GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
                             +    F   + + +VL      L+ + RLRDEAHRFAIT HR
Sbjct: 530 LADAAEAAEKGFVSELARSPERVFLPGRKDPVVLRQNSAELFLLARLRDEAHRFAITFHR 589

Query: 547 K-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K RR++   S L+EI GIG  RKR LL+ FG ++ +  ++PE LA +EG   + A  ++ 
Sbjct: 590 KLRRERNFQSVLEEIPGIGEGRKRALLRHFGALRRVREATPEELAQVEGFGPRQAAAVHA 649

Query: 606 HFHKNTSHT 614
            FH+  +  
Sbjct: 650 FFHRPDAPP 658


>gi|256371640|ref|YP_003109464.1| excinuclease ABC, C subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008224|gb|ACU53791.1| excinuclease ABC, C subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 620

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 179/616 (29%), Positives = 281/616 (45%), Gaps = 36/616 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVTC 64
           +PE PG YQ  D   RV+YVGKA NL+ R+ SY       + +   M++  + + + V  
Sbjct: 10  IPEAPGSYQFRDGEDRVIYVGKARNLRARVGSYFQDPRQLSPKTRAMLAVASRLTWIVVP 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE ++IK   PR+NI LRDDKS+P I +T   + P    +R        YFGP
Sbjct: 70  SEQDALLLEYSLIKEHHPRYNIRLRDDKSYPMIAVTVGERWPRAMIYRGKRRRGARYFGP 129

Query: 125 FASVDAVEKTINSLQRTFFLRSCAD---SVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +A   A  + +  L+R   LR+C+    +      RPCL F I RC GPC G +    Y 
Sbjct: 130 YADAGAAREVLELLRRALPLRTCSPAKLAQHERAGRPCLYFDIGRCVGPCIGAVDEATYR 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V E   FL G   +L + +   M+ A  + ++E A   RDRL+A+  +          
Sbjct: 190 GLVDEVTGFLEGRAGSLVDALETEMHAAASRLEFEEAARLRDRLSAIEAVLERQSVALGH 249

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK- 297
               D   ++ ++    ++      G+  G      + DS +     L   +R +Y D+ 
Sbjct: 250 ERDLDAIGVHRDELDLYLEVVRVRHGRIVGVGGARAERDSGAMLFDELLDLVRSYYDDQA 309

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  I+   E  E      +     G  V++  P + E   ++E A  NA  +H +  
Sbjct: 310 IDVPPRIVARVEVAEAREATDALTSLLGRPVRVVTPYRRELAVLVEIAERNAALAHQRAR 369

Query: 357 STE----ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                   +    L +  +   L   P RIE +D SH+ G S VG MVV+ +       Y
Sbjct: 370 RERATDLATRSRGLTELGELAGLGAPPVRIECFDMSHLQGRSYVGSMVVMEDGLMRHGAY 429

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           R F +    V   DD   MR V                   +  +  F   PD+++LDGG
Sbjct: 430 RHFRV---SVPHNDDVGAMREV-------------LSRRLDRLDDRRFGGRPDLIVLDGG 473

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
             QL+    +L++  +   + ++++AK     +  E +   + E + +      LY +Q+
Sbjct: 474 APQLNGVLRLLEERGMAGTVPVVALAK-----SFEELYVPDRSEPVRVPRGTLALYLLQQ 528

Query: 533 LRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRFAIT HR+RR+  A  S L+ I G+GP R+  LL  FG++  I+ +S   L  
Sbjct: 529 LRDEAHRFAITYHRRRRQLDAERSTLESIPGLGPARRARLLAEFGSIYEIAEASEAELVR 588

Query: 592 IEGISKKIACKIYNHF 607
             G+  ++A  +    
Sbjct: 589 A-GVPARVASAVRERL 603


>gi|139473819|ref|YP_001128535.1| excinuclease ABC subunit C [Streptococcus pyogenes str. Manfredo]
 gi|189038124|sp|A2REN0|UVRC_STRPG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|134272066|emb|CAM30305.1| UvrABC system protein C [Streptococcus pyogenes str. Manfredo]
          Length = 598

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 171/624 (27%), Positives = 288/624 (46%), Gaps = 43/624 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+KR++SY   ++ T +   ++S+I +  + 
Sbjct: 8   KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHDT-KTELLVSEIVDFEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT ++ EALLLE N+I++  P++NI L+DDKS+P++ IT+    P L   R      G Y
Sbjct: 67  VTESDTEALLLEINLIQKNMPKYNIKLKDDKSYPFLKITN-ESFPRLVITRYIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + +     + C  + + +C            + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPI----NKVCFYYHLGQCCAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             + + K FL+G +  + E +   M  A+ +  +E A  +RD ++ ++ ++     +   
Sbjct: 182 RLIDDVKHFLNGKDDKIIEDLRSKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +             
Sbjct: 242 LQDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEEDFLTYMGQFYQDKQHF 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ + + E  +E  +  I   K          PK+GEK++++  A  NA     +    
Sbjct: 302 IPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQKFDL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                      + +      +     RIE +DNS+I G S V  MVV  +    K  YRK
Sbjct: 355 LEKDIKKTSGAIDNLGHLLGINKPV-RIEAFDNSNIQGTSPVAAMVVFVDGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V   DD A MR VL RR+S++ K                   P+++I+DGG G
Sbjct: 414 FKIKT--VVGPDDYASMREVLFRRYSRVKKEG--------------LQAPNLIIVDGGVG 457

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++ A+ V++K  +   I +  + K  K     +  F    E + L  R    + + R++
Sbjct: 458 QVNVAKDVIEK-QLGLTIPVAGLQKNDKHQT-HDLLFGNPLEVVPLPRRSEEFFLLHRIQ 515

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFA+T HR+ RRK +  S LD I+G+GP RK+LLL+ F T+  I+ ++ E + ++ 
Sbjct: 516 DEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRKQLLLRHFKTITAIASATSEEIQAL- 574

Query: 594 GISKKIACKIYNHF--HKNTSHTP 615
           GI K +   I      +KN   +P
Sbjct: 575 GIPKTVVEAIQQQITDNKNDRSSP 598


>gi|223043785|ref|ZP_03613828.1| excinuclease ABC, C subunit [Staphylococcus capitis SK14]
 gi|222442882|gb|EEE48984.1| excinuclease ABC, C subunit [Staphylococcus capitis SK14]
          Length = 594

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 172/613 (28%), Positives = 286/613 (46%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++S+I N  F VT +
Sbjct: 15  VPLEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVSEIRNFEFIVTSS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 74  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPRLIVTRTVKKGTGKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R C +       + CL + I +C GPC  ++  +KY +   
Sbjct: 133 PNAYSAQETKKLLDRIYPFRKCDNMP----DKLCLYYHIGQCMGPCVYDVDLDKYAQMTK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  +   +   M +A+   D+E A  +RD +  + ++      +       
Sbjct: 189 EITDFLNGEDKTIIHNLESRMTKASEDLDFEQAKEYRDMIQHIHNLTKKQKIMSTDNTIR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G         +                         P+ 
Sbjct: 249 DVFGYNVSKGWMCVQVFFIRQGNMIKRDATMIPIQQSEEEEFYTFIGQFYSLNQHILPKE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           + + +  ++  +  +   K       I  P +G K+++++ A  NA           +  
Sbjct: 309 VHVPKNLDKEMIHSVVDTK-------IVQPSRGAKKEMVDLANHNAEVQLENKFELIVRD 361

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ + 
Sbjct: 362 ESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   MR V+ RR+++++                    PD++I+DGGKG ++ 
Sbjct: 421 T--VEGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMNG 464

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
              VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE 
Sbjct: 465 VMDVLENELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEV 521

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+ R+K    S LD+I+GIG  RK  LL++FG++K +  ++ + L    G+ 
Sbjct: 522 HRFAITFHRQTRQKTGLKSVLDDIDGIGSKRKTTLLRTFGSIKKMKEANLDDLKGA-GLP 580

Query: 597 KKIACKIYNHFHK 609
           +K+A  +      
Sbjct: 581 EKVAKNLQKALQN 593


>gi|220917777|ref|YP_002493081.1| excinuclease ABC, C subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254764919|sp|B8JDG6|UVRC_ANAD2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|219955631|gb|ACL66015.1| excinuclease ABC, C subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 707

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 196/669 (29%), Positives = 310/669 (46%), Gaps = 74/669 (11%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIR 59
             +++P  PG Y M D AG V+YVGKA +L+ R++SY        R  +  +   + ++ 
Sbjct: 8   KLDELPAEPGCYLMKDRAGEVVYVGKASSLRSRVRSYFDPGRGDQRAFVALLDELLGDLE 67

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-- 117
             VT +E EA+LLE  +IK+ +PRFN+ LRDDK F  + + ++H  P L   R       
Sbjct: 68  VIVTRSEKEAVLLENELIKKHRPRFNVRLRDDKDFIVLKLDERHPYPRLEVRRAREKRQP 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              YFGP++S  ++ +T+  + R F LR+C+D VF HR RPC+L+QI RC  PC  E+++
Sbjct: 128 GARYFGPYSSASSIRETLRMVNRHFQLRTCSDHVFDHRKRPCILYQIHRCPAPCVYEVAA 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E+Y + V +A +FL G    L E++   M  A     +E A   RD+L A+         
Sbjct: 188 EEYRQSVEDAVEFLEGREGELVERLRGRMAGAAEGLRFEEAARLRDQLQAVERSLEKQRV 247

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D   LY       +Q      G+ +         + E  + +ILS FL  +Y
Sbjct: 248 LMSDRGDRDVIGLYREGPDLVVQVLSMRAGKLQDAQAH-PFREQEFPDEEILSSFLSLYY 306

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ IL+  E  +   L     ++ G +V++  P++G K  +++ A  NA +    
Sbjct: 307 EHTDAPDEILVPLEPVQAEALADVLSERRGRRVRLLTPQRGAKADLLDVARRNAEQGFRA 366

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               +   +  L    +   L   P+ +E YD S   G  AVG  V + +    K  YR+
Sbjct: 367 WHEHDERREQALAAVARALHLARPPRWMECYDISTFQGALAVGSGVSMKDGEPDKANYRR 426

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + +    V  QDD AM+  V+ RR  + +   +                PD++++DGGKG
Sbjct: 427 YKVK--AVAGQDDFAMLHEVITRRLRRALGEGQ---------------LPDLIVIDGGKG 469

Query: 475 QLSAAQGVLKKLNVENR----------ITIISIAK------------------------- 499
           QL+AA    K L V  R          + ++ +AK                         
Sbjct: 470 QLNAALAAAKDLGVPTRPSPGNPDAPFVELVGLAKSRLVDGPSLGTARVVGRRGRRAEAR 529

Query: 500 -------------GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
                             +    F   + + +VL      L+ + RLRDEAHRFAIT HR
Sbjct: 530 LADAAEAAEKGFVSELARSPERVFLPGRKDPVVLRQNSAELFLLARLRDEAHRFAITFHR 589

Query: 547 K-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K RR++   S L+EI GIG  RKR LL+ FG ++ +  ++PE +A +EG   + A  ++ 
Sbjct: 590 KLRRERNFQSVLEEIPGIGEGRKRALLRHFGALRRVREATPEEIAQVEGFGPRQAAAVHA 649

Query: 606 HFHKNTSHT 614
            FH+  +  
Sbjct: 650 FFHRPDAPP 658


>gi|313148062|ref|ZP_07810255.1| excinuclease ABC subunit C [Bacteroides fragilis 3_1_12]
 gi|313136829|gb|EFR54189.1| excinuclease ABC subunit C [Bacteroides fragilis 3_1_12]
          Length = 608

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 172/616 (27%), Positives = 305/616 (49%), Gaps = 38/616 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKEHQPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 79  SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++   ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E+
Sbjct: 138 YSHAPSMHAVLDLIKHLYPLRTCSLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    + + + + M +   +  +E A   +++ A + + ++ ++ + 
Sbjct: 198 YLKNISEIKEILKGNTQEISKMLYQQMQELAAEMKFEEAQKVKEKYALIENYRSKSEVVS 257

Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           + +    ++  +      A I       G      TF  K     T  ++L+  + +   
Sbjct: 258 SVLHNIDVFSIEEDGEKSAFINYLHITNGAINQAFTFEYKKKLNETKEELLTLGIIEMRE 317

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K     I++  + E           Q G K K+        ++     +  A      
Sbjct: 318 RYKSASREIIVPFDIEMELNNVTFTIPQRGDKKKLLELSLLNVKQYKADRMKQAE----- 372

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           KL+ E     ++K+  ++  L  +P +IE +DNS+I G  AV   VV  +    KN YRK
Sbjct: 373 KLNPEQRSMRLMKEIQQELHLDRLPMQIECFDNSNIQGTDAVAACVVFKKAKPSKNDYRK 432

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +N+    V   DD A M+ V+ RR+ ++++ E                 PD++I DGGKG
Sbjct: 433 YNIKT--VVGADDYASMKEVVRRRYQRVLEEE--------------SPLPDLIITDGGKG 476

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+   + V+++L ++  I I  +AK  K     E  F    + + +    P+   +++++
Sbjct: 477 QMEVVRQVMEELQLD--IPIAGLAKDRKHRTS-EVLFGFPPQTIGIKQHSPLFRLLEQIQ 533

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR +R K    S LD I GIG   K LLL+ F +VK I  +S E +A++ 
Sbjct: 534 DEVHRFAITFHRDKRSKRQVSSALDSIKGIGEKTKTLLLKEFKSVKRIKEASMEEVATV- 592

Query: 594 GISKKIACKIYNHFHK 609
            I +  A  +    + 
Sbjct: 593 -IGESKAKIVKEGLNN 607


>gi|218258583|ref|ZP_03474926.1| hypothetical protein PRABACTJOHN_00581 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225353|gb|EEC98003.1| hypothetical protein PRABACTJOHN_00581 [Parabacteroides johnsonii
           DSM 18315]
          Length = 605

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 179/610 (29%), Positives = 298/610 (48%), Gaps = 44/610 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG YQ  D  G ++YVGKA NL++R+ SY +  + +++   ++ QI +I++ V  T
Sbjct: 19  IPESPGCYQYFDEKGTIIYVGKAKNLKRRVSSYFNKEHDSNKTRVLVKQIRDIKYFVVDT 78

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E +ALLLE N+IK+ +PR+N+LL+DDK++P I++      P +++ R+       Y+GP+
Sbjct: 79  EEDALLLENNLIKQYRPRYNVLLKDDKTYPSIVV-KNEYFPRIFQTRNIVRDGSRYYGPY 137

Query: 126 ASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            S+   +  +  L+  + LR+C        +   R + CL + IKRC GPC G  + E+Y
Sbjct: 138 PSIYTAKVMLQMLKELYPLRTCKYPLTPESIAEGRYKVCLEYHIKRCKGPCEGLQTLEEY 197

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            + + E K+ L G    + + +   M +   +  +E A   +++   + + ++ +     
Sbjct: 198 QQNISEIKEILRGNISQISKHLYEEMQKLAGELRFEEAQKIKEKYEVIENYRSKSTVVTP 257

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           + + +D FSL  N+N A I       G      TF  K   + +   +LS  + +     
Sbjct: 258 MLHNIDVFSLAENENSAYINYLHIGNGAIVQAYTFEYKKRLDESKEDLLSLGIIEMRNRF 317

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
                 ++     +  L            V ITVP++G+K+K++E + +N  +    KL 
Sbjct: 318 KSTAREIIVPFPLDIELE----------NVSITVPQRGDKKKLVELSEMNVKQYKVDKLK 367

Query: 358 T------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                  E     +LK+      L  +P  IE +DNS+I G  AV   VV       K  
Sbjct: 368 QAEKLNPEQRSTRLLKEIQDTLHLSKLPAHIECFDNSNIQGSDAVAACVVFKMAKPSKKD 427

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRK+N+    V   DD A M+ V+ RR+ + I  E                 PD++I DG
Sbjct: 428 YRKYNIKT--VVGPDDYASMKEVVRRRYQRAIAEE--------------TPLPDLIITDG 471

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQ+   + V++   +   I I  +AK  K     E  F    E + + ++  +  F  
Sbjct: 472 GKGQMEVVREVIQD-ELHLDIPIAGLAKDGKHRTS-ELLFGFPPETIGMPIQSFMFKFFT 529

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           +++DE HRFAI  H+ +R K+   S LD+I GIG   K LLL+ F +VK I  +S + L 
Sbjct: 530 QIQDEVHRFAIAFHKDKRSKSQTKSELDKIKGIGEKTKVLLLRHFKSVKRIREASFDELK 589

Query: 591 SIEGISKKIA 600
            + G +K  A
Sbjct: 590 EVIGEAKTKA 599


>gi|298387043|ref|ZP_06996597.1| excinuclease ABC subunit C [Bacteroides sp. 1_1_14]
 gi|298260193|gb|EFI03063.1| excinuclease ABC subunit C [Bacteroides sp. 1_1_14]
          Length = 609

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 301/622 (48%), Gaps = 47/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVYQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGVYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P +++ R       SY+GP
Sbjct: 79  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFRTRKIIKNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   + + CL + IK+C+GPC G  S E 
Sbjct: 138 YSHLPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFKVCLEYHIKKCAGPCVGLQSHED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G   ++   +   M +   +  +E A   +++   + + ++ ++ + 
Sbjct: 198 YLKNIDEIKEILKGNTQDISRMLVERMQELANEMKFEEAQKIKEKYLLIENYRSKSEVVS 257

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           + +    ++  +    N A +       G      TF  K     +  ++L+  + +   
Sbjct: 258 SVLHNIDVFSIEEDDSNSAFVNYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L            V  TVP++G+K+K+++ +++N  +    +
Sbjct: 318 RYKSHSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSILNVKQYKADR 367

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     +LK+   +  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 368 LKQAEKLNPEQRSMRLLKEIQNELHLDKPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I 
Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 471

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK  K     E  F    + + +  +  +   
Sbjct: 472 DGGKGQMEVVREVIED-ELHLNIPIAGLAKDNKHRTS-ELLFGFPAQTIGIKQQSSLFRL 529

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAIT HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 530 LTQIQDEVHRFAITFHRDKRSKRQVASALDSIKGIGEKTKTALLKEFKSVKRIKEASLEE 589

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           +A +  I +  A  +       
Sbjct: 590 IAKV--IGEVKAQTVKKGLSNE 609


>gi|329960636|ref|ZP_08298979.1| excinuclease ABC, C subunit [Bacteroides fluxus YIT 12057]
 gi|328532509|gb|EGF59303.1| excinuclease ABC, C subunit [Bacteroides fluxus YIT 12057]
          Length = 613

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 175/624 (28%), Positives = 312/624 (50%), Gaps = 49/624 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 16  NLPESPGIYQYLNTEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 76  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRKIIRNGSSYYGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G+ S E 
Sbjct: 135 YSHIPSMYALLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQSQED 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    ++  + + M +   +  +E A   +++   + + ++ ++ + 
Sbjct: 195 YLKNIAEIKEILKGNTQEVERMLFQQMQELAAEMKFEEAQKIKEKYLLIENYRSKSEVVS 254

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++  +       A I       G      TF  K     +  ++LS  + +  
Sbjct: 255 NVLHNIDVFSIEEDNDERSAFINYLHITNGAINQAFTFEYKKRLNESKEELLSLGIIEMR 314

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  L            V  T+P++G+K+K++E +++N  +    
Sbjct: 315 ERYKSLSREIIVPFEVDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     +LK+  ++  L  +P +IE +DNS+I G   V   VV  +    
Sbjct: 365 RLKQSEKLNPEQRTVRLLKEIQQELHLDRLPMQIECFDNSNIQGSDPVAACVVFLKGKPS 424

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V+  DD A M+ V++RR+ + ++ +                 PD++I
Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAVEEK--------------LPLPDLLI 468

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+SA + V+ +L ++  I I  +AK  K     E  +    + + L    P+  
Sbjct: 469 TDGGKGQMSAVKEVMDELKLD--IPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNTPLFR 525

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +  ++DE HRFAIT HR +R K    S LDEI GIG   K  LL+ F +VK I  +S E
Sbjct: 526 LLTHIQDEVHRFAITFHRDKRSKRQIASALDEIKGIGEKTKAALLKEFKSVKRIKEASSE 585

Query: 588 TLASIEGISKKIACKIYNHFHKNT 611
            L  + G  +  A  I  +F ++ 
Sbjct: 586 ALGKVVG--EAKAKLIQEYFTESE 607


>gi|29348675|ref|NP_812178.1| excinuclease ABC subunit C [Bacteroides thetaiotaomicron VPI-5482]
 gi|81443557|sp|Q8A2N9|UVRC_BACTN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|29340580|gb|AAO78372.1| excinuclease ABC subunit C [Bacteroides thetaiotaomicron VPI-5482]
          Length = 609

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 301/622 (48%), Gaps = 47/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVYQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGVYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P +++ R       SY+GP
Sbjct: 79  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFRTRKIIKNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   + + CL + IK+C+GPC G  S E 
Sbjct: 138 YSHLPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFKVCLEYHIKKCAGPCVGLQSHED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G   ++   +   M +   +  +E A   +++   + + ++ ++ + 
Sbjct: 198 YLKNIDEIKEILKGNTQDISRMLVEKMQELANEMKFEEAQKIKEKYLLIENYRSKSEVVS 257

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           + +    ++  +    N A +       G      TF  K     +  ++L+  + +   
Sbjct: 258 SVLHNIDVFSIEEDDSNSAFVNYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L            V  TVP++G+K+K+++ +++N  +    +
Sbjct: 318 RYKSHSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSILNVKQYKADR 367

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     +LK+   +  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 368 LKQAEKLNPEQRSMRLLKEIQNELHLDKPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I 
Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 471

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK  K     E  F    + + +  +  +   
Sbjct: 472 DGGKGQMEVVREVIED-ELHLNIPIAGLAKDNKHRTS-ELLFGFPAQTIGIKQQSSLFRL 529

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAIT HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 530 LTQIQDEVHRFAITFHRDKRSKRQVASALDSIKGIGEKTKTALLKEFKSVKRIKEASLEE 589

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           +A +  I +  A  +       
Sbjct: 590 IAKV--IGEVKAQTVKKGLSNE 609


>gi|222054404|ref|YP_002536766.1| excinuclease ABC, C subunit [Geobacter sp. FRC-32]
 gi|254764934|sp|B9M422|UVRC_GEOSF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|221563693|gb|ACM19665.1| excinuclease ABC, C subunit [Geobacter sp. FRC-32]
          Length = 622

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 195/619 (31%), Positives = 299/619 (48%), Gaps = 34/619 (5%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCT 65
           P  PGVY M D    VLYVGKA +L+KRI+SY  ++  +  +I  +++++ +I+F VT T
Sbjct: 11  PSSPGVYIMKDAEATVLYVGKARDLRKRIRSYFAASGDSRYQIRFLMARVTDIQFIVTDT 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EAL+LE  +IK+ +P++N  LRDDK++  + +      P L   R  +     YFGP+
Sbjct: 71  EKEALILENTLIKKYRPKYNFNLRDDKTYFSLRMDMSSDFPRLSIIRKVTRDGARYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
           +S       +  L + F LR       R R RPCL +Q+K+CS PC G+IS E YM    
Sbjct: 131 SSASDARAVLKHLYKLFPLRHYPMETCRRRNRPCLFYQLKQCSAPCHGKISREDYMALAE 190

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMD 243
            A  FL G N  + +     M+ A   E YE A   RD + ++         +      D
Sbjct: 191 GAALFLEGKNREILKIFRERMSAAAAAEKYEKAARFRDLIRSIEVTVEKQKVVAQGGDSD 250

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY-TDKPCPEN 302
               Y       I   F   G   G+  +      E  + + ++ FL ++Y  +   P  
Sbjct: 251 VIGFYREGEQLHIALLFLRGGTLTGSRNYSFSW--EMDDHEGIASFLNEYYNQEVFIPSE 308

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           I+L     +    E    +  G +V ITVP++G K +++  A+ NA  +  ++     S 
Sbjct: 309 IVLPIAIADPLPQEELLCELRGRRVSITVPQRGNKLELVRLAIKNAETAAAERKKAAESG 368

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           + IL+   ++  L  +P+RIE YD S+I G  AVG  V   +    K  YR++ +    V
Sbjct: 369 EAILQTLKERLHLHKLPRRIECYDISNIQGQMAVGSKVAFVDGKADKAHYRRYRIKG--V 426

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD AMMR +  RRF                   +   +PD++I+DGG GQL+    V
Sbjct: 427 SQSDDFAMMREMFSRRFK---------------PGTAPDDYPDLIIVDGGIGQLNVLTHV 471

Query: 483 LKKLNVENRITIISIAK-GPKRSAG--------MEKFFVKKGEALVLNMRDPILYFIQRL 533
           L  L + + +    +AK    R  G           F   +   +VL      L  + R+
Sbjct: 472 LGDLQITD-VEAAGLAKSRVDREMGATEISRSDERVFLPNRKNPVVLRQNSAPLLLLARI 530

Query: 534 RDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRFA+  H+K R  K   S L+ I GIG  R++ LL+ FG++K IS ++ E L  +
Sbjct: 531 RDEAHRFAVAYHKKLRGNKLLASQLEAIPGIGIKRRKELLRHFGSLKKISEATLEELRQV 590

Query: 593 EGISKKIACKIYNHFHKNT 611
           +GIS  +A  ++ H H+N 
Sbjct: 591 QGISATVAESLWKHLHENE 609


>gi|329956357|ref|ZP_08296954.1| excinuclease ABC, C subunit [Bacteroides clarus YIT 12056]
 gi|328524254|gb|EGF51324.1| excinuclease ABC, C subunit [Bacteroides clarus YIT 12056]
          Length = 606

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 175/620 (28%), Positives = 311/620 (50%), Gaps = 49/620 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 16  NLPESPGIYQYLNAEGTIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 76  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G+ + E+
Sbjct: 135 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQNQEE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    ++  + + M +   +  +E A   +++   L + ++ ++ + 
Sbjct: 195 YLKNIAEIKEILKGNTQEIERMLYQQMQELAAEMKFEEAQKIKEKYLLLENYRSKSEVVS 254

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++  +       A I       G      TF  K     T  ++LS  + +  
Sbjct: 255 NVLHNIDVFSIEEDNDEKSAFINYLHITNGAINQAFTFEYKKRLNETKEELLSLGIIEMR 314

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  L            V  T+P++G+K+K++E +++N  +    
Sbjct: 315 ERYKSLSREIIVPFELDMEL----------KDVTFTIPQRGDKKKLLELSILNVKQYKAD 364

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     +LK+  ++  L  +P +IE +DNS+I G   V   VV  +    
Sbjct: 365 RLKQAEKLNPEQRTIRLLKEIQQELHLDRLPMQIECFDNSNIQGSDPVAACVVFIKGKPS 424

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V+  DD A M+ V++RR+ + I+                   PD++I
Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAIEEN--------------SPLPDLLI 468

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+SA + ++ +LN++  I I  +AK  K     E  +    + + L    P+  
Sbjct: 469 TDGGKGQMSAVKEIIDELNLD--IPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNSPLFR 525

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAIT HR +R K    S LDEI GIG   K  LL+ F +VK I  +  E
Sbjct: 526 LLTQIQDEVHRFAITFHRDKRSKRQVASALDEIKGIGDKTKNALLKEFKSVKRIKEAPAE 585

Query: 588 TLASIEGISKKIACKIYNHF 607
            +  + G  +  A  I  +F
Sbjct: 586 AIIKVVG--ETKAKIIKEYF 603


>gi|33861439|ref|NP_893000.1| excinuclease ABC subunit C [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|81576027|sp|Q7V1I9|UVRC_PROMP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|33634016|emb|CAE19341.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 656

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 194/626 (30%), Positives = 314/626 (50%), Gaps = 29/626 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+  G Y   DI   +LY+GK+  L+ R+ SY ++    + R++ M+ QI  I   VT
Sbjct: 38  EIPKSSGCYLFKDIDNNLLYIGKSKTLRNRVSSYFNNYAELSPRLSLMVRQITEIEIIVT 97

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG--SY 121
            +E EAL LE+N+IK  KP FNILL+DDK +PY+ IT   + P ++  R          Y
Sbjct: 98  DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEQYPRIFITRKRRNRNNFDRY 157

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+  V  + KT+  +++ F LR     V++ RT  CL + I RC G C   ISSE Y 
Sbjct: 158 YGPYVDVGLLRKTLFIIKKIFPLRQRPRPVYKDRT--CLNYSIGRCPGVCQEIISSEDYK 215

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + + +      G N +L+  + R MNQ +   ++E+A   RD+++ L  +          
Sbjct: 216 KTMKQVSMIFQGRNDDLEVFLERKMNQYSNDLEFENAAKIRDQISGLKLLTESQKISIPD 275

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
                D F +    N++ IQ      G+  G   +  K D  S   +IL   L + Y + 
Sbjct: 276 SSINRDIFGIVSENNISSIQIFQMRSGKLIGRIGYTQKID-NSDETEILQRVLEEHYINV 334

Query: 297 --KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  ILL     + + +E    +    KVK+ +PK+ +K + +E  L NA     +
Sbjct: 335 EGVEIPSEILLQFNLPKHNTIEEWLSELRQKKVKLIIPKRNKKFETVEMVLKNAKLELER 394

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            L+    ++  ++D T+   L + P+RIE YD SHI G   V   VV  +    K  YRK
Sbjct: 395 ILNGIQDNESSIEDLTQILELTNQPRRIEGYDISHIQGTDPVASQVVFIDGIPSKQNYRK 454

Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP--------SWP 464
           + +   ++     DD A +  V+ RRF +  K + +       Q+             WP
Sbjct: 455 YKIKDPNIFIGHSDDFASIYEVIYRRFKKWSKFKIDGGDISSLQDKKKSTLENDLLTDWP 514

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGGKGQL+AA   L +L++   + I S+AK  +     E F     ++L  +   
Sbjct: 515 DLIMIDGGKGQLNAALKALTQLDLHEEVNICSLAKKNE-----EIFIPGFSKSLDTDQNQ 569

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             L  ++R+RDEAHRFA++ HR +R  +   S L +I G+GP R + LL+ F ++  I  
Sbjct: 570 KGLLLLRRVRDEAHRFALSFHRNKRSARMNRSQLSQIPGLGPSRIKDLLEHFNSIDAIRI 629

Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609
           +S E L+ ++G+    A  IYN+F++
Sbjct: 630 ASREELSKVKGLGMHSANDIYNYFNE 655


>gi|186475616|ref|YP_001857086.1| excinuclease ABC subunit C [Burkholderia phymatum STM815]
 gi|184192075|gb|ACC70040.1| excinuclease ABC, C subunit [Burkholderia phymatum STM815]
          Length = 740

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 191/699 (27%), Positives = 305/699 (43%), Gaps = 99/699 (14%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+S+I  I  TVT 
Sbjct: 46  QLPHMPGVYRYYDEQGAVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVSRIAKIETTVTR 105

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R S   +  YFGP
Sbjct: 106 SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHQFPRMAYYRGSVDKKNQYFGP 164

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G ++ E Y   V
Sbjct: 165 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAVTEEDYARDV 224

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    + +++ + M+    +  +E A   R+++++LS + +           
Sbjct: 225 SNASRFLLGRQSEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGGDSD 284

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS----------------------- 278
           +D  ++       C+       G++ G   +F                            
Sbjct: 285 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPTHVESALTADEGGIEDGDVLLSAETAS 344

Query: 279 ---------ESTNAQI------------LSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317
                    + +   +                      D           E+E       
Sbjct: 345 VIDVEAELGDESEDALSIDEAASEESAPEESDSEDVAEDADKKPRRAHGIESEVLEAFIA 404

Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINA--HRSHTQKLSTEISHQMILKDFTKKFAL 375
             +        + V      R++++  +  A    +  ++   +    + + +   K AL
Sbjct: 405 QHYLGNRVPPVLVVSHAPASRELVDLLIEQAGHKVTLLRQPQGQKRAWLAMAEQNAKIAL 464

Query: 376 PH----------------IPKRIEIYDNSH---------IMGCSAVGCMVV-VGENGFVK 409
                                 +E  D +H              A     V    +    
Sbjct: 465 ARLLSEQGSQQSRTRSLANTLSMECEDLAHLRIECFDISHTMGEATQASCVVFHHHKMQS 524

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI------------------KNEENLNF 451
           ++YR++N+    +   DD A MR VL RR+ +++                    +     
Sbjct: 525 SEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANANDEAAELQPEAAADPAAAP 582

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
              +   +    P++V++DGGKGQ+  A+ V  +L ++  + ++ +AKG  R  G+E   
Sbjct: 583 EGAEPVAAGGQLPNIVLIDGGKGQVEIARQVFNELGLDLGM-LVGVAKGEGRKVGLETLV 641

Query: 512 VKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKR 569
              G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R++
Sbjct: 642 FADGRPSLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLEELEGVGAKRRQ 701

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 702 RLLARFGGLRGVVAASIDDLASVEGISRALAEQIYRQLH 740


>gi|256419523|ref|YP_003120176.1| excinuclease ABC subunit C [Chitinophaga pinensis DSM 2588]
 gi|256034431|gb|ACU57975.1| excinuclease ABC, C subunit [Chitinophaga pinensis DSM 2588]
          Length = 615

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 180/629 (28%), Positives = 299/629 (47%), Gaps = 54/629 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PG+Y+    AG +LYVGKA +L+KR+ SY   N+  ++   ++  I++I FT+  
Sbjct: 12  TIPLQPGIYKYYSEAGELLYVGKAKSLRKRVSSYFVKNHDNYKTRKLVENIHHIEFTIVG 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +A LLE ++IK+ +P+FNI L+DDK++PYI+I      P ++  R+       Y GP
Sbjct: 72  SEQDAFLLENSLIKQFQPKFNINLKDDKTYPYIVI-KHESYPRVFLTRNVIKDGSEYLGP 130

Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           F SV  V + +  ++     RT  L     +V + + + CL + +  C GPC G  + E 
Sbjct: 131 FTSVGRVRELLEVIRYNIPLRTCNLNLSPQNVAKGKYKVCLEYHLGNCKGPCEGLQTEED 190

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y E + + K  L G    + +     M +  +  ++E A I R ++ +L   Q+ +    
Sbjct: 191 YREGLQQVKNILRGNLSPVLQLFRTQMQEHAMNMEFEKAEIVRKKIESLQAYQSKSTIVG 250

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                +D FS+    N A +       G    T T  L+   E  + ++L+Y +      
Sbjct: 251 TRVGNVDVFSIISEGNYAYVNYLRVLNGTIADTKTVTLEKKLEEDDTEVLTYAVGYLRDA 310

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +     I++  E E                V I+VPK G+K+K++E +  N +    + 
Sbjct: 311 FQSLAREIIVPLEIEYPEE-----------HVTISVPKGGDKKKLLELSEKNVNYFKEEL 359

Query: 356 LSTE---------ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
              +         +  + +L        L  +P  IE +DNS+  G   V   VV  +  
Sbjct: 360 YRKKILHLEGKSDMEKKKVLYQLQADLELQELPLHIECFDNSNFQGAYPVSACVVFKDGV 419

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR FN+    V+  +D A M+ V+ RR+S+L+  ++ L              P +
Sbjct: 420 ASKKDYRHFNIKT--VQGINDFASMKEVVYRRYSRLLAEQQPL--------------PQL 463

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           VI+DGGKGQL +A   ++ L++   +T++ +AK  +     E FF    +++ L      
Sbjct: 464 VIIDGGKGQLGSAMESIRALDLIGSMTVVGLAKNEE-----EIFFPGDKDSIKLPYDSES 518

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  I+R+RDE HRF IT HR++R K    + L+ I GIG      LL++F +V  I   S
Sbjct: 519 LKLIRRVRDEVHRFGITFHRQKRSKGTFKNELEAIKGIGENTATQLLKTFRSVAKIKLLS 578

Query: 586 PETLASIEGISKKIACKIYNHFHKNTSHT 614
            + L  ++ I    A  +Y HFH  T  T
Sbjct: 579 EDDL--VKEIGAAKARLVYTHFHPATGET 605


>gi|227499427|ref|ZP_03929538.1| excision endonuclease subunit UvrC [Anaerococcus tetradius ATCC
           35098]
 gi|227218489|gb|EEI83732.1| excision endonuclease subunit UvrC [Anaerococcus tetradius ATCC
           35098]
          Length = 616

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 184/614 (29%), Positives = 296/614 (48%), Gaps = 26/614 (4%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTCT 65
           PE PGVY M +    ++YVGKA +L++R++ Y  +S N   ++  M+  I++  + +   
Sbjct: 14  PELPGVYIMRNADDEIIYVGKAISLKRRVRQYFDNSKNKGAKVLAMVKNIDHFEYIIVQN 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEAL+LE+N+IK+ +PR+NI+LRDDK +PYI I  K K P + K R        YFGP+
Sbjct: 74  EVEALVLESNLIKKNRPRYNIVLRDDKQYPYIKI-LKEKFPRIKKVRQVKKDGAKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKYMEF 183
               AV   I      +  R+C  +  +     RPCL + IK+C GPC  +     Y+  
Sbjct: 133 PDAYAVNDAIALFHLYYPFRTCNLNFDKGARLDRPCLNYFIKKCKGPCVDKEDESTYLRN 192

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYN 240
           + +   FL   +  +   +   M   + + ++E A I+RD   ALS I    +      +
Sbjct: 193 MEQVSSFLDKKSDKIPAWVLEKMQAYSKELNFEMAAIYRDYYRALSVISERQNVTETRAD 252

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299
            MD  +     N   IQ  F   G+      F +K D    +  I+S F++QFY D    
Sbjct: 253 DMDIIATSKGINNIIIQVFFMRMGKIVDREHFVIKNDFMEKDEDIISSFMKQFYLDMTYI 312

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQK 355
           P+ I++     +   L      +   KV I  PK G+K+++++ A  NA     +   + 
Sbjct: 313 PKEIIVQSLPSDLQSLSDFLSDKKNAKVSIMKPKLGKKKELLDLASRNAYDMRMKLDKRI 372

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
              E           +   +     R+E +D S+  G  +VG MVV  +      +YRKF
Sbjct: 373 ERKERKRSSGFNQLKEILNIK-DIFRMECFDISNTSGVLSVGSMVVYEDGIPTPKEYRKF 431

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    V   DD A  R +L RR  + I+ +          +  F S PD++++DGGKGQ
Sbjct: 432 KIKT--VVGPDDYASHREILTRRLKRGIEEKAK-----GYTKTGFGSMPDLILMDGGKGQ 484

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           +S A+ V+ +L ++  I I  + K  K +       +   E + +N RDP+   I  +++
Sbjct: 485 VSIAKEVISELALD--IEIAGLVKDDKHTTRA---IIYDNEEIPINRRDPVYKLIYEIQE 539

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           +AH FAI  HRK  +     S LDEI G+G   ++ L + F T+  I ++S E L  +  
Sbjct: 540 QAHNFAINYHRKLMQNTMKKSELDEIKGVGEKTRKNLYKHFKTIANIKKASVEELMEVPL 599

Query: 595 ISKKIACKIYNHFH 608
           + K  A +IY +F 
Sbjct: 600 VGKVQALEIYKYFK 613


>gi|253568980|ref|ZP_04846390.1| excinuclease ABC subunit C [Bacteroides sp. 1_1_6]
 gi|251840999|gb|EES69080.1| excinuclease ABC subunit C [Bacteroides sp. 1_1_6]
          Length = 609

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 170/622 (27%), Positives = 300/622 (48%), Gaps = 47/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVYQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGVYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P +++ R       SY+GP
Sbjct: 79  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFRTRKIIKNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   + + CL + IK+C+GPC G  S E 
Sbjct: 138 YSHLPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFKVCLEYHIKKCAGPCVGLQSHED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G   ++   +   M     +  +E A   +++   + + ++ ++ + 
Sbjct: 198 YLKNIDEIKEILKGNTQDISRMLVEKMQDLASEMKFEEAQKIKEKYLLIENYRSKSEVVS 257

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           + +    ++  +    N A I       G      TF  K     +  ++L+  + +   
Sbjct: 258 SVLHNIDVFSIEEDDSNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L            V  TVP++G+K+K+++ +++N  +    +
Sbjct: 318 RYKSHSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSILNVKQYKADR 367

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     +LK+   +  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 368 LKQAEKLNPEQRSMRLLKEIQSELHLDKPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I 
Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 471

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK  K     E  F    + + +  +  +   
Sbjct: 472 DGGKGQMEVVREVIED-ELHLNIPIAGLAKDNKHRTS-ELLFGFPAQTIGIKQQSSLFRL 529

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAIT HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 530 LTQIQDEVHRFAITFHRDKRSKRQVASALDSIKGIGEKTKTALLKEFKSVKRIKEASLEE 589

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           +A +  I +  A  +       
Sbjct: 590 IAKV--IGEVKAQTVKKGLSNE 609


>gi|150024332|ref|YP_001295158.1| excinuclease ABC subunit C [Flavobacterium psychrophilum JIP02/86]
 gi|189038053|sp|A6GW65|UVRC_FLAPJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|149770873|emb|CAL42338.1| Excinuclease ABC, C subunit [Flavobacterium psychrophilum JIP02/86]
          Length = 599

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 186/625 (29%), Positives = 308/625 (49%), Gaps = 52/625 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P+ PGVYQ  D  G++LYVGKA NL+KR+ SY +  + T +   ++ +I  I+ 
Sbjct: 8   LQIQTLPDNPGVYQYYDKDGKILYVGKAKNLKKRVSSYFNKVHDTAKTNVLVKKIVTIKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK L+PR+NILLRDDK++P+I I  K     L+  R        
Sbjct: 68  IVVPTETDALLLENNLIKTLQPRYNILLRDDKTYPWICI-KKEPFSRLFPTRKMVKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S   V   ++ ++  + LRSC       ++  ++ + CL + I  C G C G  
Sbjct: 127 YFGPYTSFKTVSVILDLIKELYPLRSCNFDLSQKNIENYKFKVCLEYHIGNCKGACEGLE 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           + E Y   ++  ++ L G   +  +   + M        +E A   ++++  L + Q+ +
Sbjct: 187 TLENYQTQINAIREILKGNFKDSMKDFKKVMTNLAQNMHFEEAQKIKEKIEILENYQSRS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                    +D FS+  ++  A I       G    + T  +K   + T+ ++L   + +
Sbjct: 247 TIINPKITNIDVFSIVSDEAAAFINFLQISHGSIIRSHTLEIKKKLDETDQELLELAIVE 306

Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                +     I++  E E                +K+TVP+ G+K++I+E ++ NA   
Sbjct: 307 LRERFQLLSREIIVPFEVEVGE------------NIKVTVPQLGDKKQILELSVRNAKFY 354

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
             ++L        E     I+    K   L   P+ IE +DNS+I G + V   VV  + 
Sbjct: 355 RIEQLKQLQIVDPERHVNRIMAQMKKDLRLSVEPRHIECFDNSNIQGTNPVAACVVFKDG 414

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YR FN+    V+  +D A M  V+ RR+ +L+   + L              P+
Sbjct: 415 KPSKKDYRHFNIKT--VEGPNDFASMEEVVYRRYKRLLDENQPL--------------PN 458

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQLS+A  ++ +L++  +I II IAK  +     E F+      L L+ +  
Sbjct: 459 LIIIDGGKGQLSSALKIIDELDLRGKIAIIGIAKRLE-----ELFYPGDSIPLYLDKKSE 513

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LR+EAHRF IT HR +R K A  S ++ I GIG      L++ F +VK +  +
Sbjct: 514 TLKIIQQLRNEAHRFGITFHRDKRSKAALNSSIETIPGIGEKTMLTLIKHFKSVKRLKLA 573

Query: 585 SPETLASIEGISKKIACKIYNHFHK 609
             + ++ + GISK  A KI + + K
Sbjct: 574 KEKEISDLIGISK--AKKITDFYSK 596


>gi|115380119|ref|ZP_01467155.1| excinuclease ABC, C subunit [Stigmatella aurantiaca DW4/3-1]
 gi|115362879|gb|EAU62078.1| excinuclease ABC, C subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 626

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 188/619 (30%), Positives = 302/619 (48%), Gaps = 38/619 (6%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQ-INNIRFTVTCTEVEALLLE 73
           M D  G ++YVGKA NL+ R++SY      T     ++   + +I   +   E EALLLE
Sbjct: 1   MKDRRGLIIYVGKAVNLRNRVRSYFTRTGDTRAFIALLDTMLGDIETVLVHNEKEALLLE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
             +IK+ KPRFN+LL+DDK F  + +      P L   R        YFGP++S  A+ +
Sbjct: 61  NELIKKHKPRFNVLLKDDKQFISLRLDRSQPYPRLEVVRKYERDGARYFGPYSSAGAIRE 120

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           T+  + R F LR+C D V  +R RPCLL QI RC  PC   +  E Y   V E   FL G
Sbjct: 121 TLRIINRYFHLRTCTDHVLANRKRPCLLHQIGRCPAPCVYPVPPEDYRRSVDEVGMFLEG 180

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250
               L + +   M +A  +  +E A   RD+L A+             +   D F+ Y  
Sbjct: 181 KAGELVDGLRARMKRAASELKFEEAARLRDQLQAIERSLERQKVATTDFKDQDVFASYRE 240

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310
            +       +   G+  G   F   +        + S+    +      PE +LL  E E
Sbjct: 241 GDRILFYVLWVRQGRLNGGQAFPFGSQEFPDEELLASFVNLYYDQGSFVPEEVLLPLEPE 300

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370
               LE    ++ G KV++ VPK+GEK +++  A  NA ++  ++  T+     +L    
Sbjct: 301 SLEGLEGLLSERKGQKVRVLVPKRGEKHELVLMAHKNAEQAFVERKRTKDETDAVLGRLQ 360

Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430
           +K  L + P+R+E +D SH  G S V   V V +    K++YR++ +    ++ QDD A 
Sbjct: 361 QKLGLRNYPRRMECFDISHFQGSSIVASQVAVTDGETDKSRYRRYKIKT--LEKQDDFAS 418

Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490
           M  V+ RR  +  + ++                PD++++DGGKGQL++A   +K L VE 
Sbjct: 419 MYEVISRRLKRGQEEKD---------------LPDLLVIDGGKGQLASAHAAMKDLGVEG 463

Query: 491 RITIISIAK---------GPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            + ++ +AK           + +   E+ F + + + +VL      ++ + R+RDEAHRF
Sbjct: 464 -VDVVGLAKSRDQEVFDRDAESARSPERVFVLGRKDPIVLPQNSAEIFMLTRMRDEAHRF 522

Query: 541 AITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT  RK  RK   +S L++I G+G  R++LLL+ FG++K +  +S E LA + G    +
Sbjct: 523 AITFQRKDLRKSRIHSALEDIPGVGEGRRKLLLRHFGSLKRVGEASIEDLAEVVG--PSM 580

Query: 600 ACKIYNHFH---KNTSHTP 615
           A +++   H   +  +  P
Sbjct: 581 AERVHAGLHGHPEEDASDP 599


>gi|188995802|ref|YP_001930054.1| excinuclease ABC subunit C [Porphyromonas gingivalis ATCC 33277]
 gi|229558463|sp|B2RM62|UVRC_PORG3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|188595482|dbj|BAG34457.1| excinuclease ABC C subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 600

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 186/620 (30%), Positives = 296/620 (47%), Gaps = 48/620 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG YQ  D  G+V+YVGKA NL++R+ SY +  +   +   ++ QI +I++ V  
Sbjct: 13  TLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILVRQIRSIKYIVVD 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE ++IK  +PR+N+LL+D K++P I+I  +   P ++  RD       YFGP
Sbjct: 73  SEGDALLLENSLIKEYQPRYNVLLKDGKTYPSIVI-KREPFPRIFATRDIKKDGSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           +      +  +  ++  + +R+C      + + + R R CL + IK+C GPC G  +S +
Sbjct: 132 YPGALIAKGMLRLVKEIYPIRTCKLDLREEKIRQGRYRVCLQYHIKKCKGPCIGNQTSNE 191

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y   V E +  L G  H L       M   + +  +E A I ++R+  L   +  +    
Sbjct: 192 YESNVSEIRDLLRGNLHRLVRMYRDRMQAYSEELRFEEAQICKERIELLERYEAKHTVVP 251

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
              + +D FS   +++ A I       G      T   +   E +  ++L+  + +    
Sbjct: 252 RNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEELLAAAITELRQR 311

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------HR 350
                + ++          E          +  T+P++G+KRK++E +  N         
Sbjct: 312 FESNAHEIVLPFDTGWQTGE---------SITTTIPRRGDKRKLLELSEKNVAQYKLDKL 362

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +KL+ E     I+    K   L   PK IE +DNS+I G S V   VV       K 
Sbjct: 363 KRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSNIQGTSPVAACVVFKMGKPSKK 422

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF++    V+  +D A MR ++ R +++L +                   PD++++D
Sbjct: 423 DYRKFHVKT--VEGPNDFASMREIISRHYTRLTEEN--------------LPLPDLIVVD 466

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLSAA   L KL +  +I II +A+  +     E FF K    L+L+ +   L  I
Sbjct: 467 GGKGQLSAAYETLDKLGLIGKIPIIGLAERLE-----EIFFPKDPVPLILDKKSETLKVI 521

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           Q LRDEAHRF I  HR  R KK   S LD I GIG   K  LL+ F +VK I  +  E L
Sbjct: 522 QHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKEDLLRHFKSVKRIRSAEEEEL 581

Query: 590 ASIEGISKKIACKIYNHFHK 609
           +++  I +  A  +Y    K
Sbjct: 582 SAL--IGRNKAKLLYEGLRK 599


>gi|325846503|ref|ZP_08169418.1| excinuclease ABC, C subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481261|gb|EGC84302.1| excinuclease ABC, C subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 615

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 203/621 (32%), Positives = 319/621 (51%), Gaps = 26/621 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +++P+ PGVY M +    ++YVGKA NL+KR+  Y  ++ N   ++  M+S IN   +
Sbjct: 8   KLKELPDLPGVYIMRNSQDEIIYVGKAINLKKRVSQYFDNNQNKGRKVLAMVSHINKFEY 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +   EVEAL+LE+N+IK+ +P++NI+LRDDK +PYI IT K K P + K R+    +G 
Sbjct: 68  IIVENEVEALVLESNLIKKNRPKYNIVLRDDKQYPYIKIT-KEKYPRIQKVRNVKKDKGY 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    AV   I      +  R+C  +  + +   RPCL + I RC GPC G  + +
Sbjct: 127 YFGPYPDAYAVNDVIELFHNLYPFRTCNLNFDKGQKLDRPCLNYYIHRCKGPCVGRENEK 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           KYME + + K FL   ++ +   + + MN+A+   D+E+A  +RD   ALS I       
Sbjct: 187 KYMENMAKVKDFLENKSNEIPNLVIKKMNKASQILDFENAAKYRDYHMALSTISQKQKVT 246

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               + +D  ++        +Q  F   G+      F +K D     + I++ F++QFY 
Sbjct: 247 TTNGDDIDIIAMSKGLFYVTMQVFFMRDGKIVDREHFIIKDDYREKESDIMASFMKQFYL 306

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
           +    P+ IL+ +   E + L+     + G KV I  PK G+K+++++ A  NA     +
Sbjct: 307 NLMYVPKEILVHKLPSELNTLKSFIENKKGGKVTINCPKLGKKKELVDMAFRNASDMMRK 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      L    +   L  I  RIE YD S+  G  +VG MVV       + 
Sbjct: 367 YEKRIEEKERKKHSGLNGLKEILNLKSIG-RIEAYDISNTSGVQSVGSMVVFQNGIAERK 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YRKF +    ++  DD   +  VL RRF++  K  +N N +       F   PD++++D
Sbjct: 426 EYRKFKIKT--IEGPDDYHSLEEVLTRRFNRAKKEIKNNNTYT-----GFGKLPDLILMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ+ +A+ VL  LN    I +  + K  K +       + + E + +  RDP+   I
Sbjct: 479 GGKGQVKSAKKVLADLNFS--IEVAGLVKDDKHTTRA---IIYENEEIPIKKRDPVYKLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
             +++EAHRFAI  HRK   +    S LD INGIG  +K  LL+ F T+  I ++S E L
Sbjct: 534 YEIQEEAHRFAINYHRKLMSQTMKKSELDNINGIGKSKKENLLRHFKTINNIKKASLEEL 593

Query: 590 ASIEGISKKIACKIYNHFHKN 610
             +E I K  A +I  +F  N
Sbjct: 594 MEVELIGKSQALEIIKYFKLN 614


>gi|34541586|ref|NP_906065.1| excinuclease ABC subunit C [Porphyromonas gingivalis W83]
 gi|81416896|sp|Q7MTG8|UVRC_PORGI RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|34397903|gb|AAQ66964.1| excinuclease ABC, C subunit [Porphyromonas gingivalis W83]
          Length = 599

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 186/620 (30%), Positives = 295/620 (47%), Gaps = 48/620 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG YQ  D  G+V+YVGKA NL++R+ SY +  +   +   ++ QI +I++ V  
Sbjct: 12  TLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILVRQIRSIKYIVVD 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE ++IK  +PR+N+LL+D K++P I+I  +   P ++  RD       YFGP
Sbjct: 72  SEGDALLLENSLIKEYQPRYNVLLKDGKTYPSIVI-KREPFPRIFATRDIKKDGSEYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           +      +  +  ++  + +R+C      + + + R R CL + IK+C GPC G  +S +
Sbjct: 131 YPGALIAKGMLRLVKEIYPIRTCKLDLREEKIRQGRYRVCLQYHIKKCKGPCIGNQTSNE 190

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y   V E +  L G  H L       M   +    +E A I ++R+  L   +  +    
Sbjct: 191 YESNVSEIRDLLRGNLHRLVRMYRDRMQVYSEGLRFEEAQICKERIELLERYEAKHTVVP 250

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
              + +D FS   +++ A I       G      T   +   E +  ++L+  + +    
Sbjct: 251 RNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEELLAAAITELRQR 310

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------HR 350
                + ++          E          +  T+P++G+KRK++E +  N         
Sbjct: 311 FESNAHEIVLPFDTGWQTGE---------SITTTIPRRGDKRKLLELSEKNVAQYKLDKL 361

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +KL+ E     I+    K   L   PK IE +DNS+I G S V   VV       K 
Sbjct: 362 KRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSNIQGTSPVAACVVFKMGKPSKK 421

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKF++    V+  +D A MR ++ R +++L +                   PD++++D
Sbjct: 422 DYRKFHVKT--VEGPNDFASMREIISRHYTRLTEEN--------------LPLPDLIVVD 465

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLSAA   L KL +  +I II +A+  +     E FF K    L+L+ +   L  I
Sbjct: 466 GGKGQLSAAYETLDKLGLIGKIPIIGLAERLE-----EIFFPKDPVPLILDKKSETLKVI 520

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           Q LRDEAHRF I  HR  R KK   S LD I GIG   K  LL+ F +VK I  +  E L
Sbjct: 521 QHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKEDLLRHFKSVKRIRSAEEEEL 580

Query: 590 ASIEGISKKIACKIYNHFHK 609
           +++  I +  A  +Y    K
Sbjct: 581 SAL--IGRNKAKLLYEGLRK 598


>gi|313204554|ref|YP_004043211.1| excinuclease ABC subunit c [Paludibacter propionicigenes WB4]
 gi|312443870|gb|ADQ80226.1| Excinuclease ABC subunit C [Paludibacter propionicigenes WB4]
          Length = 605

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 167/622 (26%), Positives = 290/622 (46%), Gaps = 46/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PGVYQ  +    ++YVGKA NL+KR+ SY +  +   +   ++  I ++++ V  T
Sbjct: 14  LPDKPGVYQYFNANDEIIYVGKAKNLKKRVSSYFNKVHEQGKTNVLVKNIVSLKYIVVET 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E +ALLLE N+IK+ +PR+N+LL+D K++P I IT+    P ++K R+     G YFGP+
Sbjct: 74  EEDALLLENNLIKQYQPRYNVLLKDGKTYPSICITN-EPFPRIFKTRNIYKNGGQYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEKY 180
           +S   +   +  +   F +R+C   + +      + + CL + I +C GPC G+ +  +Y
Sbjct: 133 SSTFTINSLLEIVHDLFPIRTCKWMLTKENIQAGKFKVCLQYHIHKCKGPCEGKETEAEY 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              + + ++ + G  + + + +   M     +  +E A   + +   +   ++ +     
Sbjct: 193 KLNIEQIRQIIQGDANEISKMLLEQMQLLASEYKFEEAHQLKLKYDLIEGYKSKSIIANT 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+   N+N A +       G      T   K   +     +L   + +     
Sbjct: 253 VVENTDVFAYDENENSAYVNILRIAKGSIVQGYTIEYKKRLDEQKEDLLLMAIVELRERF 312

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
                 ++                     + +TVP++G+++K+++ +L N  +    KL 
Sbjct: 313 QSKSKEIIVP----------FKMDIPIAGITVTVPQRGDRKKLLDLSLQNVRQYKLDKLK 362

Query: 358 T------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                  +     +LK   +   L   P  IE +DNS+I G  AV   VV  +    K  
Sbjct: 363 QAEKLNPDQRAIQLLKTIQEALHLDKPPLTIECFDNSNISGSDAVAACVVFKKAKPSKKD 422

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRK+N+    V   DD A M+ V+ RR+S+++  E                 PD++I DG
Sbjct: 423 YRKYNIKT--VVGPDDYASMKEVVRRRYSRMLNEE--------------SPLPDLIIADG 466

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G GQ+   + V++   ++  I I  +AK  K     E  F    +A+ L + DP+   + 
Sbjct: 467 GVGQMEVIRQVIED-ELKISIPIAGLAKDSKHHT-RELLFGFPAKAIGLKINDPLFKLLA 524

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            ++DE HRFAI+ HR +R K+   S LD I GIG   K  L++ F +VK I  +S + L 
Sbjct: 525 SMQDEVHRFAISFHRDKRSKSQTASELDTITGIGEKTKNDLIKHFKSVKRIKSASLDELT 584

Query: 591 SIEGISKKIACKIYNHFHKNTS 612
               I K  A  +Y+HF  N S
Sbjct: 585 EA--IGKSRASIVYSHFKANES 604


>gi|212696065|ref|ZP_03304193.1| hypothetical protein ANHYDRO_00601 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676694|gb|EEB36301.1| hypothetical protein ANHYDRO_00601 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 615

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 203/621 (32%), Positives = 319/621 (51%), Gaps = 26/621 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +++P+ PGVY M +    ++YVGKA NL+KR+  Y  ++ N   ++  M+S IN   +
Sbjct: 8   KLKELPDLPGVYIMRNSQDEIIYVGKAINLKKRVSQYFDNNQNKGRKVLAMVSHINKFEY 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +   EVEAL+LE+N+IK+ +P++NI+LRDDK +PYI IT K K P + K R+    +G 
Sbjct: 68  IIVENEVEALVLESNLIKKNRPKYNIVLRDDKQYPYIKIT-KEKYPRIQKVRNVKKDKGY 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSE 178
           YFGP+    AV   I      +  R+C  +  + +   RPCL + I RC GPC G  + +
Sbjct: 127 YFGPYPDAYAVNDVIELFHNLYPFRTCNLNFDKGQKLERPCLNYYIHRCKGPCVGRENEK 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           KYME + + K FL   ++ +   + + MN+A+   D+E+A  +RD   ALS I       
Sbjct: 187 KYMENMAKVKDFLENKSNEIPNLVIKKMNKASQILDFENAAKYRDYHMALSTISQKQKVT 246

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               + +D  ++        +Q  F   G+      F +K D     + I++ F++QFY 
Sbjct: 247 TTNGDDIDIIAMSKGLFYVTMQVFFMRDGKIVDREHFIIKDDYREKESDIMASFMKQFYL 306

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
           +    P+ IL+ +   E + L+     + G KV I  PK G+K+++++ A  NA     +
Sbjct: 307 NLMYVPKEILVHKLPSELNTLKSFIENKKGGKVTINCPKLGKKKELVDMAFRNASDMMRK 366

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +    E      L    +   L  I  RIE YD S+  G  +VG MVV       + 
Sbjct: 367 YEKRIEEKERKKHSGLNGLKEILNLKSIG-RIEAYDISNTSGVQSVGSMVVFQNGIAERK 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YRKF +    ++  DD   +  VL RRF++  K  +N N +       F   PD++++D
Sbjct: 426 EYRKFKIKT--IEGPDDYHSLEEVLTRRFNRAKKEIKNNNTYT-----GFGKLPDLILMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ+ +A+ VL  LN    I +  + K  K +       + + E + +  RDP+   I
Sbjct: 479 GGKGQVKSAKKVLADLNFS--IEVAGLVKDDKHTTRA---IIYENEEIPIKKRDPVYKLI 533

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
             +++EAHRFAI  HRK   +    S LD INGIG  +K  LL+ F T+  I ++S E L
Sbjct: 534 YEIQEEAHRFAINYHRKLMSQTMKKSELDNINGIGKRKKENLLRHFKTINNIKKASLEEL 593

Query: 590 ASIEGISKKIACKIYNHFHKN 610
             +E I K  A +I  +F  N
Sbjct: 594 MEVELIGKSQALEIIKYFKLN 614


>gi|320107636|ref|YP_004183226.1| excinuclease ABC subunit C [Terriglobus saanensis SP1PR4]
 gi|319926157|gb|ADV83232.1| excinuclease ABC, C subunit [Terriglobus saanensis SP1PR4]
          Length = 665

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 192/670 (28%), Positives = 313/670 (46%), Gaps = 82/670 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIR 59
               +P  PGVY   +    V+YVGKA NL+ R++SY    N     +   ++ +  ++ 
Sbjct: 6   KIRTLPTQPGVYLYKNAEDEVIYVGKAKNLRSRVRSYFLEANQLANRKTGSLMREAVDLE 65

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119
           + +   E EAL LE N+IK+ KPRFNILLRDDK++PY+ +T + + P ++  R       
Sbjct: 66  YILVANEREALALENNLIKQRKPRFNILLRDDKTYPYVKLTVRDRHPKVFVTRKLKKDGA 125

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSE 178
            YFGP+   +   + ++ + R+F + SC   + R+  RPCL + IKRC  PC    ++ +
Sbjct: 126 LYFGPYFPGNLAYRLVDLIHRSFLIPSCKVDLSRYHPRPCLEYYIKRCLAPCVENLVTPD 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + + + + FL G    L+++I   M++A   E YE A   RD++  +  +Q      
Sbjct: 186 TYRDAIRDVQLFLEGKESELEDRITARMHEAAASEQYELAARLRDQIVTVHQLQEKQRIA 245

Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQ---NRGTCTFFLKTDSESTNAQ-------- 284
                  D F  +   ++  +       G+    R      L    E    +        
Sbjct: 246 STDDSDADVFGFHFANDMLAVNQFHMRSGKIVDRRDFFFEDLPEILEDDEPETTETIDSL 305

Query: 285 -----------------------------------ILSYFLRQFYTDKP-CPENILLSEE 308
                                                + FL+Q Y D+P  P  I++  E
Sbjct: 306 SLSSSSTPLSSRSEAEGSAFLPDQAEDTQTFNPSNFFAAFLKQLYLDQPYVPRTIMVPAE 365

Query: 309 AEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI-SHQMILK 367
             +  LL      + G+KV+I  P++GEKR +++    NA +S+ Q+  T   S   I  
Sbjct: 366 FRDRDLLATLLCDRTGHKVEILAPQRGEKRSLVDLVCQNAKQSYDQRFRTLQPSKAAIAA 425

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
                  L   PKRIE +D SHI G   V  MVV  +    K+ YRKF +  N V   DD
Sbjct: 426 SLQDALGLADPPKRIECFDISHIQGAETVASMVVWEDGEMKKSDYRKFKV--NSVSGVDD 483

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  +L RR+S+L   ++               +P ++++DGG GQL AA   L++L 
Sbjct: 484 FASMHEILTRRYSKLQAEKK--------------PFPSLILIDGGLGQLHAAYAALEQLG 529

Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGE--ALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           +  +  + SIAK        E  +V   E   +VL+ R P+L+ +Q +RDE+HRFA+T H
Sbjct: 530 ITLQ-PLASIAKRE------EIIYVHGQEEDPVVLDRRSPVLHLVQHIRDESHRFAVTYH 582

Query: 546 RKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           RKRR+ +   + L  I G+GP  ++ L++ FG+++ I  + P+ L ++  ++   A KI 
Sbjct: 583 RKRREIRDRETELLPIPGVGPRTRQRLIEHFGSIRGIKLAGPDALTAV--VNAATAEKIR 640

Query: 605 NHFHKNTSHT 614
            + +      
Sbjct: 641 AYLNAERDAA 650


>gi|260061493|ref|YP_003194573.1| excinuclease ABC subunit C [Robiginitalea biformata HTCC2501]
 gi|88785625|gb|EAR16794.1| excinuclease ABC, C subunit [Robiginitalea biformata HTCC2501]
          Length = 596

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 184/624 (29%), Positives = 302/624 (48%), Gaps = 50/624 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +PE PGVYQ  D   R+LYVGKA NL+KR+ SY    + + +   ++ +I +IR 
Sbjct: 8   IQLKTLPESPGVYQFYDADQRMLYVGKAKNLKKRVGSYFTKKHDSGKTRVLVKKIRSIRH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK  +PR+N+LLRDDKS+P++ I    + P ++  R+       
Sbjct: 68  IVVPTESDALLLENNLIKEHQPRYNVLLRDDKSYPWLCI-KNERFPRIFPTRNRIEDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ S+  V   +  ++  + LR+C      + +   + + CL + +  C GPC G  
Sbjct: 127 YFGPYTSMKTVRALLELIRSVYPLRTCNYDLAAEKIRDGKYKVCLEYHLGNCLGPCEGLQ 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
               YM  V + ++ + G   +  +   R M Q   +  +E A   ++++  L + Q+ +
Sbjct: 187 DEASYMRQVDDIRQIIRGNFGSSLQYFRRRMKQLAGETRFEEAQQIKEKVEILENYQSKS 246

Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
             ++     +D FS+  +   A +       G    + T  +K   E ++  +L+  +  
Sbjct: 247 TVVHPKITDVDVFSIVSDPTHAYVNYMQIAHGLVVRSHTIEIKKKLEESDEDLLALAIVT 306

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                             ++  + + F       V++TVP +G+KRKI+E +L NA    
Sbjct: 307 LRERFGS-----------DSEEVYLPFEVPVAGPVRVTVPSRGDKRKIVELSLRNAKFFR 355

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            ++         +     +++   K   L   P+ IE +DNS+I G + V   VV  +  
Sbjct: 356 QERFKQIRITDPDRHVNRLMEQMKKDLRLSEEPRHIECFDNSNIQGSNPVAACVVFRDGK 415

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K +YR FN+    V+  DD A M  V+ RR+ +++   ++L              P +
Sbjct: 416 PSKKEYRHFNIRT--VEGPDDFASMTEVVHRRYRRMLDQGDSL--------------PQL 459

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGGKGQLSAA   L  L +   I II IAK  +     E +F K    L L+ +   
Sbjct: 460 IVVDGGKGQLSAALKSLDVLGLRGTIAIIGIAKRLE-----EIYFPKDPIPLYLDKKSET 514

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  IQ+LR+EAHRF IT HRK+R   A  S L++I+G+G    R LL+ F +VK I  +S
Sbjct: 515 LRVIQQLRNEAHRFGITHHRKKRSMAAISSALEQIDGVGEKTARQLLRKFKSVKRIRAAS 574

Query: 586 PETLASIEGISKKIACKIYNHFHK 609
                    +    A KIY    +
Sbjct: 575 EA--ELAAEVGPSKARKIYESLRE 596


>gi|303233380|ref|ZP_07320049.1| excinuclease ABC, C subunit [Atopobium vaginae PB189-T1-4]
 gi|302480509|gb|EFL43600.1| excinuclease ABC, C subunit [Atopobium vaginae PB189-T1-4]
          Length = 686

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 180/634 (28%), Positives = 289/634 (45%), Gaps = 49/634 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG Y   ++   V+YVGKA NL+ R+  Y+  ++   +I  M+ ++    + V  
Sbjct: 70  HVPEEPGCYLWKNVHDTVIYVGKAKNLRARMTQYVQLSDDRLKIPRMMLEVAGFDYIVVE 129

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LE N+I   KP +N+  +DDKS+PYI +T     PA+   R+       YFGP
Sbjct: 130 TEHEALVLERNLIGYYKPYYNVDFKDDKSYPYIALTMGTPFPAIKYTREQHDKSSLYFGP 189

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP---------------------CLLFQ 163
           +    A  +TI  L++   + +    V+R  T+                      C  + 
Sbjct: 190 YTDSHAARETIEILRKAAPICATTCPVWRKMTKHFAKHPEDVQVAQLTLATSEKSCFDYH 249

Query: 164 IKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223
           + +  G C G IS E Y + V   + FL G   ++ E + + M+ A     +E A   + 
Sbjct: 250 VGKAPGVCVGAISREDYAQHVALVRDFLRGKRTSIYETLTQQMHDAAADLAFEQAARIKR 309

Query: 224 RLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280
           RL  LS +Q+    + +     D    Y  + ++ +       G       F L +  + 
Sbjct: 310 RLDVLSSLQDSQQVVLSSNTSADVIGFYRQETISAVCVFIVREGSVIRANDFILNSGMDV 369

Query: 281 TNAQILSYFLRQFYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339
              ++   F++++Y      P  I LS   ++   L      + G+   I VP++GEK+K
Sbjct: 370 PEVELQESFIKRYYEKTDDIPAEIQLSCTLDDECALTQWLSCRAGHACSIHVPQRGEKKK 429

Query: 340 IIEQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395
           ++E A+ NA  +  + +     ++      L +     ALP IP+RIE +D S + G   
Sbjct: 430 LLETAMRNAQHALVRYMVRTGYSDDRTNTALLELESALALPAIPQRIECFDISTLHGYFT 489

Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455
           V  MVV       K+ YR F +    +   +D   M  VL RR+S               
Sbjct: 490 VASMVVFINGKPAKHLYRHFKIRTK-LDEANDFVSMSEVLGRRYS-----------AKNL 537

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
              +F   P +++LDGGK QL+AA   LK L +     +  +AK  +     E F     
Sbjct: 538 ASSAFGPAPQLLVLDGGKPQLTAALTQLKALGISLN--VCGLAKSDE-----EVFVPWDT 590

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQS 574
             +VL      LY I+ +RDE+HRFAIT HR  R KA   S LDE+ G+GP RK+ LL  
Sbjct: 591 TPIVLPSGSASLYLIKYIRDESHRFAITFHRYLRDKAMSKSILDEVEGVGPKRKKQLLAH 650

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           FG++K +  ++   +  + GI K +A  ++    
Sbjct: 651 FGSMKRLRSATVADIEQVAGIPKDVARAVWQTLQ 684


>gi|312891270|ref|ZP_07750789.1| excinuclease ABC, C subunit [Mucilaginibacter paludis DSM 18603]
 gi|311296230|gb|EFQ73380.1| excinuclease ABC, C subunit [Mucilaginibacter paludis DSM 18603]
          Length = 608

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 178/629 (28%), Positives = 309/629 (49%), Gaps = 52/629 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
           + + +P  PGVYQ  +    ++Y+GKA +L+ R+ SY + + +   +   ++S+I NI F
Sbjct: 13  AIKNIPHKPGVYQFWNTDNELIYIGKAKDLRNRVGSYFNKDLNVNGKTRVLVSKIRNITF 72

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+  TEV+A LLE ++IK+ +PR+NILL+DDK++P+I+I      P +Y  R        
Sbjct: 73  TIVDTEVDAWLLENSLIKKHQPRYNILLKDDKTYPWIII-KNENYPRIYWTRTIVRDGSK 131

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           Y GP+ASV  +   ++ ++ T+ LR+C       ++   + + CL +Q+  C GPC    
Sbjct: 132 YLGPYASVSMMHAILSLIRETYPLRTCSLPLTKPNIDAGKFKVCLEYQLGNCKGPCQNYQ 191

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           + + Y   + E K  L+G    + + +  ++  A L  ++E A   + +   L + Q+ +
Sbjct: 192 TEDDYASNIEEIKDILNGKIGTILKNLKADIENAALNMNFELAHQLKRKFDLLENYQSKS 251

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                    +D FS+   +  A +       G    T T  LK   +  + ++L++ + +
Sbjct: 252 TVVNSSITDIDVFSIASEEKYAFVNFLKVMNGTIIQTQTIELKKRLDEDDEELLTFAITE 311

Query: 293 FYTDKPCP-ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA--- 348
           F        + I++  + +                +K TVPK GEK+K+++ +  N    
Sbjct: 312 FRERYSSKAKEIIVPFDIDLDD-----------PHIKFTVPKLGEKKKLLDLSQKNVTFF 360

Query: 349 ---HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
                   +KL+ E+  + +L    K   +  +P+ IE +DNS+  G   V  +VV  + 
Sbjct: 361 KRDKIEQYEKLNPEVRSERLLTQMMKDLRMNQLPRHIECFDNSNFQGKYPVSAIVVFKDG 420

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YR FN+    V+  +D A M   + RR+ +++     L              P 
Sbjct: 421 KPSKKDYRHFNVKT--VEGPNDFATMEEAVHRRYRRMLDEGGEL--------------PQ 464

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++++DGGKGQLS+A   LK L ++ +IT+I IAK  +     E F+      + L+ +  
Sbjct: 465 LIVIDGGKGQLSSALKSLKLLGIDKQITVIGIAKRLE-----ELFYPGDQYPMYLDKKSE 519

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ LRDEAHRF IT HRK+R K    + L+ I+GIG      LL+ F +VK I  +
Sbjct: 520 TLKVIQHLRDEAHRFGITFHRKKRDKGTLATELELIDGIGKTSAEKLLKYFKSVKKIREA 579

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSH 613
           + E L  +  ++ K A  I  +F ++   
Sbjct: 580 TTEELQEV--VNTKQAKAITQYFTQDKQE 606


>gi|332881633|ref|ZP_08449281.1| excinuclease ABC, C subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680272|gb|EGJ53221.1| excinuclease ABC, C subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 609

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 174/618 (28%), Positives = 298/618 (48%), Gaps = 46/618 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PG YQ L+  G ++YVGKA NL++R+ SY   ++ + +   ++S+I +I++ V  
Sbjct: 19  NLPDSPGCYQYLNDEGEIIYVGKAKNLKRRVYSYFSKDHQSRKTAMLVSKIRDIKYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE N+IKR KP +N+LL+DDK++P I +T+    P ++K R        YFGP
Sbjct: 79  SEEDALLLENNLIKRYKPHYNVLLKDDKTYPSICVTN-EYFPRIFKTRHIVRNGSVYFGP 137

Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ +  +   +  ++     RT  L    +++   +   CL + IK C GPC G  S E+
Sbjct: 138 YSHIPTLNALLELIKNLYPLRTCHLALTPENIRSGKFNVCLEYHIKNCKGPCIGAQSREE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y++ + EAK+ L G    +   +   M     +  +E A   + +   L   ++ ++   
Sbjct: 198 YLQSIQEAKEILKGNTAEISRNMLVEMQALAAEMRFEEAQAIKRKYDLLESYRSKSEVVS 257

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            + + +D FS+  + N A I       G      TF  K     +  ++L+  + +    
Sbjct: 258 NVLHNIDVFSIEDDGNAAYINYLHVTNGSINQAFTFEYKKRMNESPEELLTLGIAEMRER 317

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
                  +++    +  +            V  TVP++G+K+K++E +++N  +    +L
Sbjct: 318 YKSRSKEIITPFPIDVEME----------GVTFTVPQRGDKKKLLELSILNVKQYKLDRL 367

Query: 357 ST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                   E     ++K+  +   L  +P RIE +DNS+I G  AV   VV  +    K 
Sbjct: 368 KQAEKLNPEQKSVRLMKEIQQAMHLEKLPMRIECFDNSNISGTDAVAACVVFKKCKPSKQ 427

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRK+N+    V   DD A M+ V+ RR+S+ +  +  L              PD++I D
Sbjct: 428 DYRKYNIKT--VVGPDDYASMKEVVRRRYSRAVAEQGEL--------------PDLIITD 471

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG+GQ+   + V++   +  RI I  +AK  +     E  F      + +    P+   +
Sbjct: 472 GGRGQMEVVREVVEDE-LGLRIPIAGLAKDDRHRT-NELLFGFPPIVIGMKTDSPVFRLM 529

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            +++DE HRFAIT HR +R K    S LD I GIG   K  LL+ F +VK I  +S + L
Sbjct: 530 TQIQDEVHRFAITFHRDKRSKHQTVSALDTIKGIGEKTKTQLLKRFKSVKRIREASFDEL 589

Query: 590 ASIEGISKKIACKIYNHF 607
           A+   I    A  I  + 
Sbjct: 590 AA--EIGPAKAKIIQENL 605


>gi|319947169|ref|ZP_08021403.1| excinuclease ABC subunit C [Streptococcus australis ATCC 700641]
 gi|319747217|gb|EFV99476.1| excinuclease ABC subunit C [Streptococcus australis ATCC 700641]
          Length = 580

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 161/596 (27%), Positives = 280/596 (46%), Gaps = 41/596 (6%)

Query: 26  GKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFN 85
           GKA NL+ R++SY   ++ T +   ++S+I +  F VT + +EALLLE N+IK  KP++N
Sbjct: 2   GKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFIVTESNIEALLLEINLIKENKPKYN 60

Query: 86  ILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLR 145
           I+L+DDKS+P+I IT+  + P L   R      G YFGP+  V A  +    L R F  R
Sbjct: 61  IMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLYFGPYPDVGAANEIKRLLDRIFPFR 119

Query: 146 SCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARN 205
            C +      ++ C  + + +C            +     E   FL G +  + + +   
Sbjct: 120 KCTNPP----SKVCFYYHLGQCMAHTVCHKDEAYFKSMAQEVSDFLKGQDDKIIDDLKLK 175

Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRMDCFSLYHNKNLACIQTCFFH 262
           M  A    ++E A  +RD + A+  ++     +       D F  Y +K   C+Q  F  
Sbjct: 176 MTTAAQNMEFERAAEYRDLIQAIGTLRTKQRVMAKDLQNRDVFGYYVDKGWMCVQVFFVR 235

Query: 263 FGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQ 322
            G+            ++     +              P  IL+ ++ +E ++  +   K 
Sbjct: 236 QGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHLIPNEILIPQDIDEEAVKALVDTKV 295

Query: 323 YGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMILKDFTKKFALPHI 378
                    P++GEK++++  A+ NA     +       +    Q  +++  K   +P  
Sbjct: 296 LK-------PQRGEKKQLVNLAIKNARVSLEQKFNLLEKSMEKTQGAIENLGKLLQIPTP 348

Query: 379 PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438
             RIE +DNS+IMG S V  MVV       K  YRK+ +    V   DD A MR V+ RR
Sbjct: 349 V-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRKYKIKT--VVGPDDYASMREVIRRR 405

Query: 439 FSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIA 498
           +S+++++                + PD++++DGG+GQ++ A+ V+++  +   I I  + 
Sbjct: 406 YSRVMRDG--------------LTPPDLIVIDGGQGQVNIAKQVIQE-ELGLDIPIAGLQ 450

Query: 499 KGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-L 557
           K  K     E  F    + + L+      + +QR++DE HRFAIT HR+ R K ++S  L
Sbjct: 451 KNDKHQT-HELLFGDPLQVIELSRTSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSQL 509

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           D I G+GP RK+LL++ F ++  I  ++ + + ++ GI + +A  +     +    
Sbjct: 510 DGIEGLGPKRKQLLMKHFKSLTKIKEATVDEIVTV-GIPRAVAEAVQAKLQQGKQE 564


>gi|118497276|ref|YP_898326.1| excinuclease ABC, subunit C [Francisella tularensis subsp. novicida
           U112]
 gi|194323579|ref|ZP_03057356.1| excinuclease ABC, C subunit [Francisella tularensis subsp. novicida
           FTE]
 gi|208779069|ref|ZP_03246415.1| excinuclease ABC, C subunit [Francisella novicida FTG]
 gi|189038056|sp|A0Q5Q7|UVRC_FRATN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|118423182|gb|ABK89572.1| excinuclease ABC, subunit C [Francisella novicida U112]
 gi|194322434|gb|EDX19915.1| excinuclease ABC, C subunit [Francisella tularensis subsp. novicida
           FTE]
 gi|208744869|gb|EDZ91167.1| excinuclease ABC, C subunit [Francisella novicida FTG]
          Length = 612

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 185/615 (30%), Positives = 317/615 (51%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ R+ SY        +   M+ QI  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC  PC G +S ++Y E 
Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G    + E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +   L    KRIE +D SH  G + +   VV  + G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDEGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K  DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKAGDDYAAIYQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREFGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|254880988|ref|ZP_05253698.1| excinuclease ABC subunit C [Bacteroides sp. 4_3_47FAA]
 gi|319639996|ref|ZP_07994723.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_40A]
 gi|254833781|gb|EET14090.1| excinuclease ABC subunit C [Bacteroides sp. 4_3_47FAA]
 gi|317388274|gb|EFV69126.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_40A]
          Length = 606

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 172/619 (27%), Positives = 309/619 (49%), Gaps = 48/619 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 18  NLPDSPGIYQYLNSEGTIIYVGKAKNLKRRVSSYFNREHPNGKTRLLVSKIADIRYIVVK 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I +++    P ++K R       SY+GP
Sbjct: 78  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVSN-EYFPRIFKTRQVIRNGSSYYGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ +++ + +R+C      +++   +   CL + IK C GPC G+   E+
Sbjct: 137 YSHMPSMLAVMDLIKKLYPIRTCKLNLSPENIRAGKFNVCLEYHIKNCKGPCIGQQPHEE 196

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           YM+ + E K  L G    + + +   M     +  +E A   +++   + + ++ ++   
Sbjct: 197 YMKNIGEIKNILKGDTQIVSDLLMEEMQALAAEMKFEEAQKIKEKYDLIENYRSKSEVVN 256

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            I + +D FS+   +N A I       G      TF  K     T  ++L   + +    
Sbjct: 257 SIIHNVDVFSIEMEENSAYINYLHITNGCINQAFTFEYKKRLNETKEELLQLGIIEMRER 316

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            K     I++  E +                V  TVP++GEK+ +++ +++N  +    +
Sbjct: 317 YKSTSREIIVPFELDMEM-----------NNVSFTVPQRGEKKHLLDLSVMNVKQYKVDR 365

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  +  +P  IE +DNS+I G  AV   VV  +    K
Sbjct: 366 LKQAEKLNPEQRSVRLMKEIQEQLHMKKLPNHIECFDNSNIQGSDAVAACVVFKKAKPSK 425

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            +YRK+ +    V   DD A M+ V+ RR+S+ I+                   PD++I 
Sbjct: 426 KEYRKYIIKT--VTGPDDYASMKEVVRRRYSRAIEEG--------------SPLPDLIIT 469

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK  K     E  +      + +    P+ + 
Sbjct: 470 DGGKGQMEVVREVIED-ELHLDIPIAGLAKDRKHRTS-ELLYGFPPLTIGVKQSTPLFHL 527

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           ++ +++E HRFAIT HR +R K+   S LD I GIG  RK  LL++F +V  I ++S E 
Sbjct: 528 LENIQNEVHRFAITFHRDKRSKSQVASALDNIKGIGEKRKTALLKTFKSVSRIRQASLEE 587

Query: 589 LASIEGISKKIACKIYNHF 607
           +A++ G  +  A  I  + 
Sbjct: 588 IAAVVG--EAAAKNIKENL 604


>gi|33862996|ref|NP_894556.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9313]
 gi|81577628|sp|Q7V7L7|UVRC_PROMM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|33634913|emb|CAE20899.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT
           9313]
          Length = 667

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 312/631 (49%), Gaps = 29/631 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            +++P  PG Y M D+  R+LYVGK+  L+ R++SY  S+ +H  RI  M+ QI  I F 
Sbjct: 38  LKEIPAEPGCYLMRDVEDRLLYVGKSKCLRNRVRSYFRSSSDHGPRIRLMVRQIAEIEFI 97

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIP--ALYKHRDSSTIQG 119
           VT +E E+L+LE+N+IK  +P FN+LL+DDK +PY+ IT   + P   + + R       
Sbjct: 98  VTDSEAESLVLESNLIKNQQPHFNVLLKDDKKYPYLCITWSEEYPRIFITRRRRFRNKND 157

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R+F LR     + + RT  CL + I RC G C  +I+ + 
Sbjct: 158 RFYGPYVDVGLLRRTLLLVKRSFPLRQRPRPLHQDRT--CLNYSIGRCPGVCQQKITPQD 215

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +      G N  LK  + + M + + + DYESA   RD++  L  +        
Sbjct: 216 YHQVLRKVAMVFQGRNQELKVLLEKQMERYSDRMDYESAANIRDQIKGLEQLTEGQKMSL 275

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++  +  +A +Q      G+      F      + T   +L   + + Y+
Sbjct: 276 PDSSVSRDVLAIASDHRVAAVQLFQMRAGKLVNRLGFTADAV-DQTLGSVLQRVIEEHYS 334

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+     +  LL     +  G +V+I+ P++  K ++IE    NA    
Sbjct: 335 QVDAVEVPPEVLVQYSLPQQELLVDWLSEHRGRRVQISCPQRQAKAELIELVERNAVFEL 394

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
           ++  S +   ++  +D  +   L   P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 395 SRAKSGQQQQELATEDLAQLLELTTQPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 454

Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLN--------FHPKKQEYSFPS 462
           RK+ +  + +K+    D   M  ++ RRF +  + ++  +             Q      
Sbjct: 455 RKYKIKSSSIKSGHSDDFMAMAEIMRRRFRRWARVKQEGSNFENLQRCSGSALQTDGLND 514

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPDVV++DGGKGQLS+A   L++L++   + + S+AK  +     + F   + + L  + 
Sbjct: 515 WPDVVMIDGGKGQLSSAMEALRELDLHEDLVVCSLAKKHE-----QIFVPGQSKPLDSDP 569

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA++ HR++R  +   S L +I G+GP R R LL  F ++  I
Sbjct: 570 DQLGVVLLRRLRDEAHRFAVSYHRQQRGVRMNRSRLTDIPGLGPRRVRDLLAHFQSIDAI 629

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             +S + ++   G+   +A +++ +FH    
Sbjct: 630 QLASVQQISQAPGLGPALALQVWTYFHPEAD 660


>gi|294777397|ref|ZP_06742848.1| excinuclease ABC, C subunit [Bacteroides vulgatus PC510]
 gi|294448465|gb|EFG17014.1| excinuclease ABC, C subunit [Bacteroides vulgatus PC510]
          Length = 606

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 173/619 (27%), Positives = 310/619 (50%), Gaps = 48/619 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 18  NLPDSPGIYQYLNSEGTIIYVGKAKNLKRRVSSYFNREHPNGKTRLLVSKIADIRYIVVK 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I +++    P ++K R       SY+GP
Sbjct: 78  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVSN-EYFPRIFKTRQVIRNGSSYYGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ +++ + +R+C      +++   +   CL + IK C GPC G+ S E+
Sbjct: 137 YSHMPSMLAVMDLIKKLYPIRTCKLNLSPENIRAGKFNVCLEYHIKNCKGPCIGQQSHEE 196

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           YM+ + E K  L G    + + +   M     +  +E A   +++   + + ++ ++   
Sbjct: 197 YMKNIGEIKNILKGDTQIVSDLLMEEMQALAAEMKFEEAQKIKEKYDLIENYRSKSEVVN 256

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            I + +D FS+   +N A I       G      TF  K     T  ++L   + +    
Sbjct: 257 SIIHNVDVFSIEMEENSAYINYLHITNGCINQAFTFEYKKRLNETKEELLQLGIIEMRER 316

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            K     I++  E +                V  TVP++GEK+ +++ +++N  +    +
Sbjct: 317 YKSTSREIIVPFELDMEM-----------NNVSFTVPQRGEKKHLLDLSVMNVKQYKVDR 365

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  +  +P  IE +DNS+I G  AV   VV  +    K
Sbjct: 366 LKQAEKLNPEQRSVRLMKEIQEQLHMKKLPNHIECFDNSNIQGSDAVAACVVFKKAKPSK 425

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            +YRK+ +    V   DD A M+ V+ RR+S+ I+                   PD++I 
Sbjct: 426 KEYRKYIIKT--VTGPDDYASMKEVVRRRYSRAIEEG--------------SPLPDLIIT 469

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK  K     E  +      + +    P+ + 
Sbjct: 470 DGGKGQMEVVREVIED-ELHLDIPIAGLAKDRKHRTS-ELLYGFPPLTIGVKQSTPLFHL 527

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           ++ +++E HRFAIT HR +R K+   S LD I GIG  RK  LL++F +V  I ++S E 
Sbjct: 528 LENIQNEVHRFAITFHRDKRSKSQVASALDNIKGIGEKRKTALLKTFKSVSRIKQASLEE 587

Query: 589 LASIEGISKKIACKIYNHF 607
           +A++ G  +  A  I  + 
Sbjct: 588 IAAVVG--EAAAKNIKENL 604


>gi|212692559|ref|ZP_03300687.1| hypothetical protein BACDOR_02056 [Bacteroides dorei DSM 17855]
 gi|237709124|ref|ZP_04539605.1| excinuclease ABC subunit C [Bacteroides sp. 9_1_42FAA]
 gi|237724393|ref|ZP_04554874.1| excinuclease ABC subunit C [Bacteroides sp. D4]
 gi|265752650|ref|ZP_06088219.1| excinuclease ABC, C subunit [Bacteroides sp. 3_1_33FAA]
 gi|212664844|gb|EEB25416.1| hypothetical protein BACDOR_02056 [Bacteroides dorei DSM 17855]
 gi|229437262|gb|EEO47339.1| excinuclease ABC subunit C [Bacteroides dorei 5_1_36/D4]
 gi|229456820|gb|EEO62541.1| excinuclease ABC subunit C [Bacteroides sp. 9_1_42FAA]
 gi|263235836|gb|EEZ21331.1| excinuclease ABC, C subunit [Bacteroides sp. 3_1_33FAA]
          Length = 606

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 173/619 (27%), Positives = 309/619 (49%), Gaps = 48/619 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 18  NLPDSPGIYQYLNSEGTIIYVGKAKNLKRRVSSYFNREHPNGKTRLLVSKIADIRYIVVK 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I +++    P ++K R       SY+GP
Sbjct: 78  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVSN-EYFPRIFKTRKIIRNGSSYYGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ +++ + +R+C      +++   +   CL + IK C GPC G+ S E+
Sbjct: 137 YSHMPSMLAVMDLIKKLYPIRTCKLNLSPENIRAGKFNVCLEYHIKNCKGPCIGQQSHEE 196

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           YM+ + E K  L G    + + +   M     +  +E A   +++   + + ++ ++   
Sbjct: 197 YMKNIGEIKDILKGDTQIVSDLLMEEMQALAAEMKFEEAQKIKEKYDLIENYRSKSEVVN 256

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            I + +D FS+   +N A I       G      TF  K     T  ++L   + +    
Sbjct: 257 SIIHNVDVFSIEMEENSAYINYLHITNGCINQAFTFEYKKRLNETKEELLQLGIIEMRER 316

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            K     I++  E +                V  TVP++GEK+ +++ +++N  +    +
Sbjct: 317 YKSTSREIIVPFEVDMEM-----------NNVTFTVPQRGEKKHLLDLSVMNVKQYKVDR 365

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  +  +P  IE +DNS+I G  AV   VV  +    K
Sbjct: 366 LKQAEKLNPEQRSVRLMKEIQEQLHMKKMPNHIECFDNSNIQGSDAVAACVVFKKAKPSK 425

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+ +    V   DD A M+ V+ RR+S+ I+                   PD++I 
Sbjct: 426 KDYRKYIIKT--VTGPDDYASMKEVVRRRYSRAIEEG--------------SPLPDLIIT 469

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK  K     E  +      + +    P+ + 
Sbjct: 470 DGGKGQMEVVREVIED-ELHLDIPIAGLAKDRKHRTS-ELLYGFPPLTIGVKQSTPLFHL 527

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           ++ +++E HRFAIT HR +R K+   S LD I GIG  RK  LL++F +V  I ++S E 
Sbjct: 528 LENIQNEVHRFAITFHRDKRSKSQVASALDNIKGIGEKRKTALLKTFKSVSRIKQASLEE 587

Query: 589 LASIEGISKKIACKIYNHF 607
           +A++ G  +  A  I  + 
Sbjct: 588 IAAVVG--EAAAKNIKENL 604


>gi|150003780|ref|YP_001298524.1| excinuclease ABC subunit C [Bacteroides vulgatus ATCC 8482]
 gi|149932204|gb|ABR38902.1| excinuclease ABC subunit C [Bacteroides vulgatus ATCC 8482]
          Length = 606

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/619 (27%), Positives = 310/619 (50%), Gaps = 48/619 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 18  NLPDSPGIYQYLNSEGTIIYVGKAKNLKRRVSSYFNREHPNGKTRLLVSKIADIRYIVVK 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I +++    P ++K R       SY+GP
Sbjct: 78  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVSN-EYFPRIFKTRQVIRNGSSYYGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ +++ + +R+C      +++   +   CL + IK C GPC G+ S E+
Sbjct: 137 YSHMPSMLAVMDLIKKLYPIRTCKLNLSPENIRAGKFNVCLEYHIKNCKGPCIGQQSHEE 196

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           YM+ + E K  L G    + + +   M     +  +E A   +++   + + ++ ++   
Sbjct: 197 YMKNIGEIKNILKGDTQIVSDLLMEEMQALAAEMKFEEAQKIKEKYDLIENYRSKSEVVN 256

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            I + +D FS+   +N A I       G      TF  K     T  ++L   + +    
Sbjct: 257 SIIHNVDVFSIEMEENSAYINYLHITNGCINQAFTFEYKKRLNETKEELLQLGIIEMRER 316

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            K     I++  E +                V  TVP++GEK+ +++ +++N  +    +
Sbjct: 317 YKSTSREIIVPFELDMEM-----------NNVSFTVPQRGEKKHLLDLSVMNVKQYKVDR 365

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  +  +P  IE +DNS+I G  AV   VV  +    K
Sbjct: 366 LKQAEKLNPEQRSVRLMKEIQEQLHMKKLPNHIECFDNSNIQGSDAVAACVVFKKAKPSK 425

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            +YRK+ +    V   DD A M+ V+ RR+S+ I+                   PD++I 
Sbjct: 426 KEYRKYIIKT--VTGPDDYASMKEVVRRRYSRAIEEG--------------SPLPDLIIT 469

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK  K     E  +      + +    P+ + 
Sbjct: 470 DGGKGQMEVVREVIED-ELHLDIPIAGLAKDRKHRTS-ELLYGFPPLTIGVKQSTPLFHL 527

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           ++ +++E HRFAIT HR +R K+   S LD I GIG  RK  LL++F +V  I ++S E 
Sbjct: 528 LENIQNEVHRFAITFHRDKRSKSQVASALDNIKGIGEKRKTALLKTFKSVSRIRQASLEE 587

Query: 589 LASIEGISKKIACKIYNHF 607
           +A++ G  +  A  I  + 
Sbjct: 588 IAAVVG--EAAAKNIKENL 604


>gi|265764835|ref|ZP_06093110.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_16]
 gi|263254219|gb|EEZ25653.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_16]
          Length = 608

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 171/614 (27%), Positives = 301/614 (49%), Gaps = 38/614 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY    + + +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKEHQSGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 79  SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++   ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E+
Sbjct: 138 YSHSPSMHAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    +   + + M     +  +E A   +++ A + + ++ ++ + 
Sbjct: 198 YLKNIAEIKEILKGNTQEISRLLYQRMQDLAAEMKFEEAQKVKEKYALIENYRSKSEVVS 257

Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           + +    ++  +      A I       G      TF  K     T  ++L+  + +   
Sbjct: 258 SVLHNIDVFSIEEDGEKSAFINYLHITNGAINQAFTFEYKKKLNETKEELLTLGIIEMRE 317

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K     I++  + E           Q G K K+        ++     +  A      
Sbjct: 318 RYKSASREIIVPFDIEIELNDVTFTIPQRGDKKKLLELSLLNVKQYKADRMKQAE----- 372

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           KL+ E     ++K+  ++  L  +P +IE +DNS+I G  AV   VV  +    K+ YRK
Sbjct: 373 KLNPEQRSMRLMKEIQQELHLDRLPMQIECFDNSNIQGTDAVAACVVFKKAKPSKSDYRK 432

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +N+    V   DD A M+ V+ RR+ + I+ E                 PD++I DGGKG
Sbjct: 433 YNIKT--VVGADDYASMKEVVRRRYQRAIEEE--------------SPLPDLIITDGGKG 476

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+   + V+++L ++  I I  +AK  K     E  F    + + +    P+   +++++
Sbjct: 477 QMEVVRQVMEELQLD--IPIAGLAKDRKHRTS-EVLFGFPPQTIGIKQHSPLFRLLEQIQ 533

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR +R K    S LD I GIG   K  LL+ F +VK I  ++ E +++I 
Sbjct: 534 DEVHRFAITFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEATIEEVSAI- 592

Query: 594 GISKKIACKIYNHF 607
            I +  A  I    
Sbjct: 593 -IGESKAKIIKEGL 605


>gi|299145225|ref|ZP_07038293.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_23]
 gi|298515716|gb|EFI39597.1| excinuclease ABC subunit C [Bacteroides sp. 3_1_23]
          Length = 611

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 168/623 (26%), Positives = 300/623 (48%), Gaps = 47/623 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P +++ R       SY+GP
Sbjct: 79  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E 
Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCSLNLTPENIRAGKFNVCLEYHIKNCAGPCIGLQSQED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    +   +   M     +  +E A   +++   + + ++ ++ + 
Sbjct: 198 YLKNIDEIKEILKGNTQEISRMLLERMQTLAGEMKFEEAQKVKEKYLLIENYRSKSEVVS 257

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
             +    ++  +    N A I       G      TF  K     +  ++L+  + +   
Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L  I F           VP++G+K+K+++ +++N  +    +
Sbjct: 318 RYKSQSREIIVPFELDLELNNIVFT----------VPQRGDKKKLLDLSILNVKQYKADR 367

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 368 LKQAEKLNPEQRSMRLMKEIQQELHLDRPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I 
Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEE--------------STPLPDLIIT 471

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK   R    E  F    + + +  + P+   
Sbjct: 472 DGGKGQMEVVREVIED-ELNLTIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 529

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAI+ HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQIASALDNIKGIGEKTKTALLKEFKSVKRIKEASFEE 589

Query: 589 LASIEGISKKIACKIYNHFHKNT 611
           +A++  I +  A  +    +   
Sbjct: 590 IAAV--IGEAKAKTVKEGLNNEQ 610


>gi|187931951|ref|YP_001891936.1| excinuclease ABC subunit C [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229558032|sp|B2SDE3|UVRC_FRATM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|187712860|gb|ACD31157.1| excinuclease ABC, C subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 612

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 185/615 (30%), Positives = 320/615 (52%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ R+ SY        +   M+ QI  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC  PC G +S ++Y E 
Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G   ++ E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +   L    KRIE +D SH  G + +   VV  ++G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K+ DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKG--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+G  R++ LL+ FG  + +SR+S + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGSKRRKALLRYFGGWQELSRASVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|134302343|ref|YP_001122312.1| excinuclease ABC subunit C [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|189038057|sp|A4IZ40|UVRC_FRATW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|134050120|gb|ABO47191.1| excinuclease ABC, C subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 612

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 186/615 (30%), Positives = 320/615 (52%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ R+ SY        +   M+ QI  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC  PC G +S ++Y E 
Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G   ++ E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +   L    KRIE +D SH  G + +   VV  ++G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K+ DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ I+S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREYGIQDKVQIVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|330997304|ref|ZP_08321157.1| excinuclease ABC, C subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329571099|gb|EGG52806.1| excinuclease ABC, C subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 609

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 175/618 (28%), Positives = 301/618 (48%), Gaps = 46/618 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PG YQ L+  G ++YVGKA NL++R+ SY   ++ + +   ++S+I +I++ V  
Sbjct: 19  NLPDSPGCYQYLNDDGEIIYVGKAKNLKRRVYSYFSKDHQSRKTAMLVSKIRDIKYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE N+IKR KP +N+LL+DDK++P I +T+    P ++K R       +YFGP
Sbjct: 79  SEEDALLLENNLIKRYKPHYNVLLKDDKTYPSICVTN-EYFPRIFKTRHIVRNGSTYFGP 137

Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ +  +   +  ++     RT  L    +++   +   CL + IK C GPC G  S E+
Sbjct: 138 YSHIPTLNALLELIKNLYPLRTCHLALTPENIRCGKFNVCLEYHIKNCKGPCIGAQSREE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y++ + EAK+ L G    +   +   M     +  +E A   + +   L   ++ ++   
Sbjct: 198 YLQSIQEAKEILKGNTAEISRNMLAEMQALAAEMRFEEAQTIKRKYNLLESYRSKSEVVS 257

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            + + +D FS+  ++N A I       G      TF  K     +  ++L+  + +    
Sbjct: 258 NVLHNIDVFSIEDDENAAYINYLHVTNGSINQAFTFEYKKRMNESPEELLTLGIAEMRER 317

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
                  +++    E  +            V  TVP++G+K+K++E +++N  +    +L
Sbjct: 318 YKSRSKEIITPFPIEVEME----------GVTFTVPQRGDKKKLLELSVLNVKQYKLDRL 367

Query: 357 ST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                   E     ++K+  +   L  +P RIE +DNS+I G  AV   VV  +    K 
Sbjct: 368 KQAEKLNPEQKSVRLMKEIQQAMHLEKLPMRIECFDNSNISGMDAVAACVVFKKCKPSKQ 427

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRK+N+    V   DD A M+ V+ RR+S+ +  +  L              PD++I D
Sbjct: 428 DYRKYNIKT--VVGPDDYASMKEVVRRRYSRAMAEQGEL--------------PDLIITD 471

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG+GQ+   + V++   +  RI I  +AK  +     E  F      + +    P+   +
Sbjct: 472 GGRGQMEVVREVVEDE-LGLRIPIAGLAKDDRHRT-NELLFGFPPIVIGMKTDSPVFRLM 529

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            +++DE HRFAIT HR +R K    S LD I GIG   K  LL+ F +VK I  +S + L
Sbjct: 530 TQIQDEVHRFAITFHRDKRSKHQTVSALDTIKGIGEKTKTQLLKRFKSVKRIREASFDEL 589

Query: 590 ASIEGISKKIACKIYNHF 607
           A+   I +  A  I  + 
Sbjct: 590 AA--EIGQAKAKIIQENL 605


>gi|256545267|ref|ZP_05472632.1| UvrABC system, C protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399094|gb|EEU12706.1| UvrABC system, C protein [Anaerococcus vaginalis ATCC 51170]
          Length = 615

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 200/621 (32%), Positives = 318/621 (51%), Gaps = 26/621 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +++P+ PGVY M +    ++YVGKA NL+KR+  Y  ++ N   ++  M+S IN+  +
Sbjct: 8   KLKELPDLPGVYIMRNSQDEIIYVGKAINLKKRVSQYFDNNKNKGRKVLSMVSHINHFEY 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +   EVEAL+LE+N+IK+ +P++NI+LRDDK +PYI IT+  K P + K R+    +G 
Sbjct: 68  IIVENEVEALVLESNLIKKNRPKYNIVLRDDKQYPYIKITN-EKFPRIQKVRNVKKDKGY 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSE 178
           Y+GP+    AV   I      + +R+C  +  + +   RPCL + I RC  PC G+   +
Sbjct: 127 YYGPYPDAYAVNDVIELFHILYPIRTCNLNFDKGQQLDRPCLNYYIDRCKAPCVGKGDEK 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +YME + + K FL   +  +   +   MN+A+   D+E+A  +RD   ALS I       
Sbjct: 187 EYMENITKIKNFLENKSDYIPNLVINKMNKASEILDFENAAKYRDYHRALSTISQKQKVT 246

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               + +D  ++        +Q  F   G+      F +K D    +  I+S F++QFY 
Sbjct: 247 TTNGDDIDIIAMSKGIFYVTMQVFFMRDGKIVDREHFIIKDDYREKDEDIISSFMKQFYL 306

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           +    P+ IL+ +   +   L +   K+ G KVKI  PK G+K+++++ A  NA     +
Sbjct: 307 NLMYIPKEILVHKLPSDLDALNLFIEKKKGNKVKINCPKLGKKKELVDMAFRNASDMMRK 366

Query: 355 K----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                   E      L    +   L     RIE YD S+  G  +VG MVV       + 
Sbjct: 367 YEKRLEEKERKKHSGLNGLKEILNLK-SINRIEAYDISNTSGVQSVGSMVVFQNGIAERK 425

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YRKF +    ++  DD   +  VL RRF +  K  +N N +       F   PD++++D
Sbjct: 426 EYRKFKIKT--IEGPDDYHSLEEVLTRRFERAKKEIKNNNTYT-----GFGKLPDLILMD 478

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ+ +A+ VLK LN    I +  + K  K +       + + E + +  RDP+   I
Sbjct: 479 GGKGQVKSAKKVLKDLNFS--IEVAGLVKDDKHTTRA---IIYENEEIQIKKRDPVYKLI 533

Query: 531 QRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
             +++EAHRFAI  HRK   +    S LD INGIG  +K  LL+ F +VK I ++S E L
Sbjct: 534 YEIQEEAHRFAINYHRKLMTQTMKKSELDNINGIGKRKKENLLKHFKSVKNIKKASLEEL 593

Query: 590 ASIEGISKKIACKIYNHFHKN 610
             ++ I +  A +I  +F  N
Sbjct: 594 MEVDLIGESQALEIIKYFKLN 614


>gi|313158439|gb|EFR57834.1| excinuclease ABC, C subunit [Alistipes sp. HGB5]
          Length = 606

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 181/622 (29%), Positives = 299/622 (48%), Gaps = 49/622 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVYQ +D +G ++YVGKA +L+KR+ SY   S  H+ ++  ++ QI  IR  V  
Sbjct: 16  LPLSPGVYQFVDRSGTIIYVGKAKSLRKRVSSYFVQSKEHSAKVRVLVRQIAEIRHIVVS 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE ++IK L+PR+NILL+DDK++P+I++  +H  P +   R  +     YFGP
Sbjct: 76  SETDALLLENSLIKTLQPRYNILLKDDKTYPWIVVRREH-FPRVQSTRQLTRDGSQYFGP 134

Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++SV      +  ++     RT  L    + + + R   CL + +  C GPC GE S  +
Sbjct: 135 YSSVMMQHSVLEFVREVVPLRTCKLNLAPEQIAKGRYSVCLQYHLGNCKGPCVGEQSEAE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y + V      L G    ++  +   M+ A     +E A  ++ RL AL +  + +    
Sbjct: 195 YAKLVDMVVAVLKGDLRPVRSYLESEMSHAAAGLKFELAQRYKQRLDALDNYSSRSVIVS 254

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ--FY 294
                +D FSL  + ++A         G   G  T  L T        +L+  ++    +
Sbjct: 255 AKIVDVDVFSLLPDDDVAYCNFVRIRHGSIVGVYTVKLSTGVGGDERDMLTLAIQHIVEH 314

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                 + +++      T L +          V  TVPK+GEK +++E +  +A     +
Sbjct: 315 IAGTLAKEVVVPFLPSTTLLFD---------GVTFTVPKRGEKLELLEFSQKSARIYRAE 365

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E   + +L    K+  L   P+ IE +DNS++ G   V   VV  +    
Sbjct: 366 QLKNLEIKNPERYTERLLNALQKELRLDRQPRHIECFDNSNLQGAHPVASCVVFRDGKPA 425

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           + +YR FN+    V+  DD A MR V+ RR+S+L +    L              PD++I
Sbjct: 426 RKEYRHFNIKT--VEGPDDYASMREVVFRRYSRLQEEGAEL--------------PDLII 469

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+     VL+ L ++  I +  +AK  +     E         + +    P+ +
Sbjct: 470 ADGGKGQMGIIHEVLEYLGLD--IPVAGLAKNDRHRTS-ELLCGYPPVLVGIRPTSPLFH 526

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           F+  +++E HRFA++ HR++R KA  +S L++I GIG    R LLQ F +V  +  +  E
Sbjct: 527 FLAHIQEEVHRFAVSFHRQKRSKAFIHSELEQIEGIGDKTIRTLLQHFRSVAKVKAAPAE 586

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            L+++ G     A KI   F K
Sbjct: 587 ELSALVG--PAKAKKIRAFFEK 606


>gi|124023198|ref|YP_001017505.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9303]
 gi|123963484|gb|ABM78240.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT
           9303]
          Length = 667

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 183/633 (28%), Positives = 310/633 (48%), Gaps = 29/633 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            +++P  PG Y M D   R+LYVGK+  L+ R++SY  S+ +H  RI  M+ QI  I F 
Sbjct: 38  LKEIPAEPGCYLMRDGEDRLLYVGKSKCLRNRVRSYFRSSSDHGPRIRLMVRQIVEIEFI 97

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIP--ALYKHRDSSTIQG 119
           VT +E E+L+LE+N+IK  +P FN+LL+DDK +PYI IT   + P   + + R       
Sbjct: 98  VTDSEAESLVLESNLIKNQQPHFNVLLKDDKKYPYICITWSEEYPRIFITRRRRFRNKND 157

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            ++GP+  V  + +T+  ++R+F LR     + + RT  CL + I RC G C  +I+ + 
Sbjct: 158 RFYGPYVDVGLLRRTLFLVKRSFPLRQRPRPLHQDRT--CLNYSIGRCPGVCQQKITPKD 215

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + +      G N  LK  + R M + + + DYESA   RD++  L  +        
Sbjct: 216 YHQVLRKVAMVFQGRNQELKVLLERQMERYSDRLDYESAANIRDQIKGLEQLTEEQKMSL 275

Query: 240 NR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++  +  +A +Q      G+      F      + T   +L   + + Y+
Sbjct: 276 PDSSVSRDVLAIASDHRVAAVQLFQMRAGKLVNRLGFTADAV-DQTLGSVLQRVIEEHYS 334

Query: 296 DKP---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                  P  +L+     +  LL     +Q G +V+I+ P++  K ++IE    NA    
Sbjct: 335 QVDAVEVPPEVLVQYSLPQQELLIDWLSEQRGRRVQISCPQRQAKAELIELVERNAVFEL 394

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
           ++  S +   ++  +D  +   L  +P+RIE YD SHI G  AV   VV  +    K  Y
Sbjct: 395 SRAKSGQQQQELATEDLAQLLELTTLPRRIEGYDISHIQGSDAVASQVVFIDGLPAKQHY 454

Query: 413 RKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIK--------NEENLNFHPKKQEYSFPS 462
           RK+ +  + +K+    D   M  ++ RRF +  +         +         Q      
Sbjct: 455 RKYKIKSSSIKSGHSDDFMAMAEIMRRRFRRWARVKQEGSDFEKLQRCSGSTLQTDGLND 514

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           WPDVV++DGGKGQLS+    L++L++   + + S+AK  +     + F   + + L  + 
Sbjct: 515 WPDVVMIDGGKGQLSSVMEALRELDLHEDLVVCSLAKKHE-----QIFVPGQSKPLDSDP 569

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               +  ++RLRDEAHRFA++ HR++R  +   S L +I G+GP R R LL  F ++  I
Sbjct: 570 DQLGVVLLRRLRDEAHRFAVSYHRQQRGVRMNRSRLTDIPGLGPRRVRDLLAHFQSIDAI 629

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             +S + ++   G+   +A +++ +FH      
Sbjct: 630 QLASVQQISQAPGLGPALAFQVWTYFHPEADKA 662


>gi|225010211|ref|ZP_03700683.1| excinuclease ABC, C subunit [Flavobacteria bacterium MS024-3C]
 gi|225005690|gb|EEG43640.1| excinuclease ABC, C subunit [Flavobacteria bacterium MS024-3C]
          Length = 595

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 187/624 (29%), Positives = 295/624 (47%), Gaps = 52/624 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +PE PGVYQ  D + ++LY+GKA NL+KR+ SY    +   +   ++ +I  I+ 
Sbjct: 8   IQLSVLPETPGVYQFYDSSDKILYIGKAKNLKKRVSSYFTLKHEIAKTRLLVKKIVLIKH 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE N+IK+ +PR+NILL+DDK+FP+I I  K + P ++  R        
Sbjct: 68  IVVPTESDALLLENNLIKKYQPRYNILLKDDKTFPWICI-KKERFPRVFLTRQLIKDGSE 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           YFGP+ +   V+  +  ++  + LR+C      + +   R + CL + +  C  PC    
Sbjct: 127 YFGPYTNKRMVKVLLELIKGLYPLRTCNYDLSFEKIQEGRYKSCLEYHLGNCHAPCENLQ 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S   Y + +   +  L G      +     M++   +E +E A   +++LA L+  Q+ +
Sbjct: 187 SEASYAKDIEAIRHILKGNLAAAMKHFKIEMDRYAAEEAFEMAHKVKEKLAVLAGYQSKS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  N +D F++  ++  A +       G    + T  +K   E T+AQIL   +  
Sbjct: 247 TIVNPKINNVDVFTVISDQTHAYVNFLELSHGAIIRSHTLEIKKQLEETDAQILELAIVS 306

Query: 293 FYTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                K   + +++  +                  +K T+P  G+K+K++  +  NA   
Sbjct: 307 LRERFKSISKEVIIPFKVLMPE------------GIKATIPVLGDKQKLLALSERNARFY 354

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
              KLS       E   + IL    +   L  +P  IE +DNS+I G + V   VV    
Sbjct: 355 RQDKLSQMRIVDPERHSKRILAQIKQDLRLSSLPVHIECFDNSNIQGSNPVAACVVFTNA 414

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YR F++    V+  DD A M  V+ RR+ +L +                 S P 
Sbjct: 415 KPNKKMYRHFHIKT--VEGPDDFASMEEVVYRRYKRLKEEG--------------SSLPQ 458

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++++DGGKGQLSAA   L +L +  +I I+ IAK  +     E +F +    L L+ +  
Sbjct: 459 LIVIDGGKGQLSAALKALDQLGLRGKIAIVGIAKRLE-----EIYFPEDPIPLYLDKKSE 513

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LR+EAHRF IT HR  R K A  S LD I GIG      LL+ F TV  I  +
Sbjct: 514 SLKVIQQLRNEAHRFGITFHRNLRSKGAIVSELDGIKGIGEKTATQLLRHFKTVAKIKEA 573

Query: 585 SPETLASIEGISKKIACKIYNHFH 608
           + + L  I  +    A  +Y HFH
Sbjct: 574 NLDAL--ITQVGPAKASILYEHFH 595


>gi|254374110|ref|ZP_04989592.1| DNA excision repair enzyme [Francisella novicida GA99-3548]
 gi|151571830|gb|EDN37484.1| DNA excision repair enzyme [Francisella novicida GA99-3548]
          Length = 612

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 185/615 (30%), Positives = 318/615 (51%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ R+ SY        +   M+ QI  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC  PC G +S ++Y E 
Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G   ++ E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +   L    KRIE +D SH  G + +   VV  + G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDEGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K  DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKAGDDYAAIYQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREFGIQHKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|125624511|ref|YP_001032994.1| excinuclease ABC subunit C [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|189038062|sp|A2RLW6|UVRC_LACLM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|124493319|emb|CAL98290.1| excinuclease ABC, C subunit [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 669

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 179/673 (26%), Positives = 301/673 (44%), Gaps = 88/673 (13%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G V+YVGKA NL+ R++SY H +++T +   ++S+I ++ + 
Sbjct: 8   KLELLPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  + +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+  K P L   R       +Y
Sbjct: 67  VVGSNIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C      H  + C  F I +C  P    +  + Y 
Sbjct: 126 FGPYPDVKAANEVKRLLDRIFPFRKCG----LHEKKVCFYFHIHQCLCPVVNHVDPQVYK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E K+FL+G +  + +++   M  A+   ++E A  +RD + A+  ++     +   
Sbjct: 182 DMTQEVKEFLTGSDKKIVKELEGKMISASDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +          +  
Sbjct: 242 LKDRDVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHM 301

Query: 299 CPENILLSEEAE------------------------------------------------ 310
            P  I + ++ +                                                
Sbjct: 302 MPREIFIPQDIDKDSVEAVVAASQEGNLLTKAQAKAVDAKVFTAKTLKFSDQKDVEQSIV 361

Query: 311 --ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQM 364
             +  L           K +I  P +GEK++++  A  NA               +    
Sbjct: 362 KLDKELSSEKRLSSLLAKTQIIQPSRGEKKQLVNMATKNAQTQLQLKFDVAERDILKTTK 421

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            +++  K   +P    RIE +DNS+IMG S V  MVV  +    K  YRK+ +    V  
Sbjct: 422 AVENLGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVG 478

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A MR V+ RR+S+ +K E  L              PD++ +DGG GQ++ A+ VL+
Sbjct: 479 ADDYASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNIAKEVLR 524

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L +   I +  + K  K     E  F    E + L+ +    + + R++DE HRFAIT 
Sbjct: 525 ELGLA--IPVAGMQKNDKHQTS-ELLFGDPLEVVPLSRQSQEFFLLTRIQDEVHRFAITF 581

Query: 545 HRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR+ R K  +S  LD I G+GP RK+ LL +F  +K I  ++ + +A   G+  ++A ++
Sbjct: 582 HRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEATVQEVAEA-GVPYEVAERV 640

Query: 604 YNHF---HKNTSH 613
            N     HK+  +
Sbjct: 641 KNTLSAPHKSDEN 653


>gi|319937287|ref|ZP_08011694.1| excinuclease ABC subunit C [Coprobacillus sp. 29_1]
 gi|319807653|gb|EFW04246.1| excinuclease ABC subunit C [Coprobacillus sp. 29_1]
          Length = 586

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/613 (28%), Positives = 296/613 (48%), Gaps = 46/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M +  G V+YVGKA  L+ R+ SY     H ++ T ++S+I +  + VT +
Sbjct: 12  LPPSPGCYLMKNKEGTVIYVGKAKKLKNRVHSYFVGA-HDYKTTKLVSEIVDFEYIVTGS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE N+IK   P++NI+  D+  +PYI +T++   P L   RD+   +  +FGPF
Sbjct: 71  EKEALLLEINLIKDYSPQYNIMFMDNTYYPYIQMTNEE-HPRLKIVRDAKEKKAKHFGPF 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A  +T   L R + LR C         +PCL + + +C  PC  ++  E+Y++   
Sbjct: 130 PDATAARETYKLLDRLYPLRKCNHIP----KKPCLYYSLNQCLAPCVRDVDQEEYVQIKK 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E  K L+G   +   ++   M +A+ + ++E A  +RD +  + H+       +N     
Sbjct: 186 EIVKLLNGDTKDKIHELTEKMTKASEELNFEQAKEYRDLITYIQHVTAKQHVQFNDNIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D    Y +     IQ  F   G+        +         + L  F+  FY +   P+ 
Sbjct: 246 DILGYYVDHGYLSIQLFFMRHGKLLSRDLNLV--PIGVNVQEDLQQFIVSFYQNNTLPKE 303

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           +LL ++ ++  L EI   K          P++G K  +++ A+ NA  S           
Sbjct: 304 VLLPQDVDDEVLKEILDCKILK-------PQKGNKYSLVQMAIDNARESLEKKFELIQKN 356

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E +    +K   +   +      IE++DNS+I G  AV  MV   +    K  YRK+ + 
Sbjct: 357 EAATIGAMKQLGELLQIETP-HVIELFDNSNIQGAYAVAGMVCFKDGIPSKKDYRKYKIK 415

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A MR V+ RR+ +++                  + PD++++DGG GQ+  
Sbjct: 416 T--VEGPDDYASMREVIYRRYYRVLMEG--------------LTPPDMILVDGGLGQIHV 459

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ V+  LN+   I +  +AK  K S  M     + G  + ++ +  + + + R++DE H
Sbjct: 460 AKEVVDSLNM--NIKVCGLAKDDKHSTAM--LLDENGTPIPIHPKSELFFLLTRMQDEVH 515

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           R+AI+ H+  R K+ + S LD+I GIGP RK+ LL  F +VK +  +S E L  +  +  
Sbjct: 516 RYAISFHKNVRSKSLFASVLDDIEGIGPKRKKQLLNHFKSVKRMKEASLEELQEL--LPD 573

Query: 598 KIACKIYNHFHKN 610
           K+A +++    ++
Sbjct: 574 KVAEELFQSLQED 586


>gi|332291738|ref|YP_004430347.1| excinuclease ABC, C subunit [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169824|gb|AEE19079.1| excinuclease ABC, C subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 617

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 181/624 (29%), Positives = 299/624 (47%), Gaps = 52/624 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PG+YQ  D  G++LYVGKA NL+KR+ SY +      RI  M+ +I+ ++ 
Sbjct: 27  LQLKTLPTSPGIYQYYDKNGKLLYVGKAKNLKKRVLSYFNKTLDNGRIRTMVKKIHEMKH 86

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE +ALLLE ++IK  +PR+N+LL+DDKS+P+I I    + P ++  R        
Sbjct: 87  IVVETETDALLLENSLIKEYQPRYNVLLKDDKSYPWICI-KNERFPRIFPTRRLIKDGSE 145

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           Y+GP+ S+  V   ++ ++  + LR+C      D +   + + CL + +  C GPC  + 
Sbjct: 146 YYGPYTSMKTVRTLLDLIKSLYKLRTCNYDLSKDKIDAGKYKVCLEYHLGNCEGPCEDKQ 205

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S ++Y E +   ++ + G   +   +    M +     ++E A   +++L  L   Q+ +
Sbjct: 206 SEKEYHEHIEHIRQIVKGDFKDSLARFREKMKEHAAAMEFEDAQRIKEKLDILEGYQSKS 265

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D FS+  ++    +       G    + T  LK   + T+ ++L   + +
Sbjct: 266 TVVNPKISDVDVFSIISDEGYGYVNFLQISHGAIIKSHTLELKKQLDETDKELLELGIIE 325

Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                    + I +  E E               + KITVPK G+K++I+E +  NA   
Sbjct: 326 IQQRFDHNSKEIYVPFEVELGD------------QYKITVPKLGDKKRILELSERNAKYY 373

Query: 352 HTQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
             ++         +     I+        L   P+ IE +DNS+I G + V   VV    
Sbjct: 374 RMERFKQTKIVDPDRHTNRIMAQMKADLRLTEEPRHIECFDNSNIQGSNPVAACVVFKNG 433

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K+ YRKFN+    V+  DD A M  V+ RR+ +L+  ++ L              P 
Sbjct: 434 KASKSDYRKFNIKT--VEGPDDFASMEEVVYRRYKRLLAEDQPL--------------PQ 477

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++I+DGGKGQLS+    L  L +  +I II IAK  +     E F+      L L+ +  
Sbjct: 478 LIIVDGGKGQLSSGVKALDDLGLRGKIAIIGIAKRLE-----ELFYPGDSIPLYLDKKSE 532

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ+LR+EAHRF IT HR +R   A  + LD I GIG      LL+ + +V  +  +
Sbjct: 533 TLKIIQQLRNEAHRFGITFHRNQRSNAALGTELDAIRGIGEKTIVDLLKHYRSVSKVKVA 592

Query: 585 SPETLASIEGISKKIACKIYNHFH 608
           S ++L  +  I    A  IYNH+H
Sbjct: 593 SKKSLTEV--IGPSKAAIIYNHYH 614


>gi|311748684|ref|ZP_07722469.1| excinuclease ABC subunit C [Algoriphagus sp. PR1]
 gi|126577217|gb|EAZ81465.1| excinuclease ABC subunit C [Algoriphagus sp. PR1]
          Length = 601

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 180/610 (29%), Positives = 302/610 (49%), Gaps = 46/610 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P+ PGVY+  + A  ++YVGKA NL+KR+ SY +  +    +   M+ +I  I  T+ 
Sbjct: 13  TLPDQPGVYRYFNAANELIYVGKAKNLKKRVSSYFNKISGLNLKTKRMVREIQRIEITMV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E++ALLLE N+IK+ +P++NILLRDDK++PY+L+T K   P +++ R     +G+YFG
Sbjct: 73  NSELDALLLENNLIKKTQPKYNILLRDDKTYPYLLLT-KENFPRIFQTRKYIPKRGTYFG 131

Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           PFASV A+   ++ ++  F +R+C        +   + + CL + I  C GPC G     
Sbjct: 132 PFASVKAMNNVLDLIRELFTIRTCKLDLSPYKIAEEKYKVCLEYHIGNCQGPCVGLQKES 191

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            Y++ + +AK  L G     K    + M +     ++E A   +D+L  L   Q  +   
Sbjct: 192 NYLKDIEQAKHILKGNLGVAKSHFKQEMQKMAENLEFEKAQKLKDKLILLEKYQAKSLVA 251

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                 +D  ++  ++  A +       G    +    LK   + T+ Q+L   L +   
Sbjct: 252 SPNIANLDVCTIVTDEKNAYVNYLRIKNGAMNVSKNVELKKKLDETDEQLLLTALIRLQD 311

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRS 351
                         +   +L     ++    + +T+PK G+K+K+IE +L NA       
Sbjct: 312 QFQS----------DAKEVLINIDIEEPIEGLNLTLPKIGDKKKLIELSLKNALYYKKEK 361

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
              K   E     +++   +  +LP IP  IE +DNS+I G + V  MV          +
Sbjct: 362 ALLKGLNEDKKDRVIRQLQQDLSLPDIPDHIECFDNSNIQGTNPVASMVCFLNGKPAVKE 421

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR F++    V   +D A M+ V+ RR+ +L++ ++ L              P ++++DG
Sbjct: 422 YRHFHIKT--VVGANDFASMKEVVGRRYKRLLEEDKPL--------------PKLIVIDG 465

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQLS++   LK+L +  ++ II IAK  +     E +F      + ++ +   L  +Q
Sbjct: 466 GKGQLSSSVEALKELGIYGKMPIIGIAKRLE-----EIYFPGDSYPIHIDKKSESLRLLQ 520

Query: 532 RLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R+RDEAHRFAIT HR  R K A+ + L +I GIG      LL  F ++K I  ++   L 
Sbjct: 521 RIRDEAHRFAITFHRDVRSKNAFGTQLTDIEGIGKNTAEKLLSHFKSIKKIKEANETELI 580

Query: 591 SIEGISKKIA 600
            + G S+  A
Sbjct: 581 EVIGSSRTKA 590


>gi|254372649|ref|ZP_04988138.1| UvrABC system protein C [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570376|gb|EDN36030.1| UvrABC system protein C [Francisella novicida GA99-3549]
          Length = 612

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 185/615 (30%), Positives = 317/615 (51%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ R+ SY        +   M+ QI  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC  PC G +S ++Y E 
Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G    + E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +   L    KRIE +D SH  G + +   VV  + G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDEGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K  DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKAGDDYAAIYQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGIERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|53711389|ref|YP_097381.1| excinuclease ABC subunit C [Bacteroides fragilis YCH46]
 gi|60679707|ref|YP_209851.1| excinuclease ABC subunit C [Bacteroides fragilis NCTC 9343]
 gi|253564503|ref|ZP_04841960.1| excinuclease ABC subunit C [Bacteroides sp. 3_2_5]
 gi|81317219|sp|Q5LIY7|UVRC_BACFN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|81383989|sp|Q650H7|UVRC_BACFR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|52214254|dbj|BAD46847.1| excinuclease ABC subunit C [Bacteroides fragilis YCH46]
 gi|60491141|emb|CAH05889.1| putative excinuclease UvrC protein [Bacteroides fragilis NCTC 9343]
 gi|251948279|gb|EES88561.1| excinuclease ABC subunit C [Bacteroides sp. 3_2_5]
 gi|301161171|emb|CBW20709.1| putative excinuclease UvrC protein [Bacteroides fragilis 638R]
          Length = 608

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 171/614 (27%), Positives = 300/614 (48%), Gaps = 38/614 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGIYQYLNAEGTIIYVGKAKNLKRRVYSYFSKEHQPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 79  SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRRIIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++   ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E+
Sbjct: 138 YSHSPSMHAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    +   + + M     +  +E A   +++ A + + ++ ++ + 
Sbjct: 198 YLKNIAEIKEILKGNTQEISRLLYQRMQDLAAEMKFEEAQKVKEKYALIENYRSKSEVVS 257

Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           + +    ++  +      A I       G      TF  K     T  ++L+  + +   
Sbjct: 258 SVLHNIDVFSIEEDGEKSAFINYLHITNGAINQAFTFEYKKKLNETKEELLTLGIIEMRE 317

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K     I++  + E           Q G K K+        ++     +  A      
Sbjct: 318 RYKSASREIIVPFDIEIELNDVTFTIPQRGDKKKLLELSLLNVKQYKADRMKQAE----- 372

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           KL+ E     ++K+  ++  L  +P +IE +DNS+I G  AV   VV  +    K+ YRK
Sbjct: 373 KLNPEQRSMRLMKEIQQELHLDRLPMQIECFDNSNIQGTDAVAACVVFKKAKPSKSDYRK 432

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +N+    V   DD A M+ V+ RR+ + I+ E                 PD++I DGGKG
Sbjct: 433 YNIKT--VVGADDYASMKEVVRRRYQRAIEEE--------------SPLPDLIITDGGKG 476

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+   + V+++L ++  I I  +AK  K     E  F    + + +    P+   +++++
Sbjct: 477 QMEVVRQVMEELQLD--IPIAGLAKDRKHRTS-EVLFGFPPQTIGIKQHSPLFRLLEQIQ 533

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR +R K    S LD I GIG   K  LL+ F +VK I  ++ E +++I 
Sbjct: 534 DEVHRFAITFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEATIEEVSAI- 592

Query: 594 GISKKIACKIYNHF 607
            I +  A  I    
Sbjct: 593 -IGESKAKIIKEGL 605


>gi|70726816|ref|YP_253730.1| excinuclease ABC subunit C [Staphylococcus haemolyticus JCSC1435]
 gi|92058696|sp|Q4L5F1|UVRC_STAHJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|68447540|dbj|BAE05124.1| excinuclease ABC subunit C [Staphylococcus haemolyticus JCSC1435]
          Length = 596

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 174/615 (28%), Positives = 293/615 (47%), Gaps = 44/615 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I N  F VT +
Sbjct: 16  VPFEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGA-HDAKTTRLVGEIRNFEFIVTSS 74

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+
Sbjct: 75  ETESLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKHPKLIVTRTVKKGTGKYFGPY 133

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  + ++T   L R +  R       +   + CL + I +C GPC  ++  + Y +   
Sbjct: 134 PNAYSAQETKKLLDRIYPFRK----CDKMPDKLCLYYHIGQCMGPCVYDVDQQVYAQMTR 189

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+G +  + + +   M  A+ K D+E A  +RD +  + ++      + +     
Sbjct: 190 EISDFLNGEDKTILKNLEDRMMDASEKLDFERAKEYRDLIQHIHNLTKKQKIMSSDNTIR 249

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC-PE 301
           D F    +K   CIQ  F   G         +    +S   +  ++  + +  ++   P+
Sbjct: 250 DVFGYNVSKGWMCIQVFFIRQGNLIQRDATMIPLQQQSEEEEFYTFIGQFYSLNQHILPK 309

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----S 357
            + + +  ++  +  +   K       I  P +G K+++++ A  NA  +   K      
Sbjct: 310 EVHVPKNLDKDMIQSVVDTK-------IVQPARGAKKEMVDLANHNAEVALENKFELIAR 362

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            E      +++  ++  +   P RIE +DNS+I G   V  MV   +    K  YRK+ +
Sbjct: 363 DESRTIKAIEELGERMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKADKKGYRKYKI 421

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V   DD   MR V+ RR+++++                    PD++I+DGGKG +S
Sbjct: 422 KT--VDGPDDYKSMREVVRRRYTRVLNEG--------------LPLPDLIIVDGGKGHMS 465

Query: 478 AAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
               VL+ +L ++  I +  + K  K     E  +    E + L       Y + R++DE
Sbjct: 466 GVLDVLENELGLD--IPVAGLRKNDKHQTS-ELLYGPNAEVVPLKKNSQAFYLLHRIQDE 522

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            HRFAIT HR+ R+K    S LD ++GIG  RK  LL++FG++K +  +S   L    G+
Sbjct: 523 VHRFAITFHRQTRQKTGLQSVLDTVDGIGSKRKTSLLRTFGSIKKMKEASVVDLKKA-GL 581

Query: 596 SKKIACKIYNHFHKN 610
            +K+A  +      +
Sbjct: 582 PEKVALNLQQALSND 596


>gi|6116772|dbj|BAA85760.1| UVR-C protein [Deinococcus radiodurans]
          Length = 610

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 172/631 (27%), Positives = 292/631 (46%), Gaps = 47/631 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY      G  +Y+GKA NL+ R+  +  +   + + T +     ++ F     
Sbjct: 2   LPTTPGVYIFR-KGGVPIYIGKANNLRSRVSQHFKAGGKSGKFTKL---AESLEFISAAN 57

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEAL+LEAN+IK+ +P +N+LL+DDK +P++ +T+    P L   R       +Y+GP+
Sbjct: 58  EVEALVLEANLIKQHRPHYNVLLKDDKHYPFLKLTN-EAYPMLVVTRRVLKDGANYYGPY 116

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               AV +  + +   F LR  +    + + RPCL + + RC GPC      ++Y + V 
Sbjct: 117 PDASAVRRVKHLIDTMFPLRKNSGLPMQKKPRPCLNYHMGRCLGPCIDAAQPDEYRQAVE 176

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHNDSIYNR 241
           + K  L G    +  ++  +M  A   +D+E A   RDR+ A+       Q+   S    
Sbjct: 177 DVKALLEGRAAPVIARLKEDMKVAAQGQDFEQAARLRDRVQAVEKLFGTEQHAFVSEETD 236

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300
           +D          A +Q      G+  G    FL    E+   +I+  F+  +YT     P
Sbjct: 237 LDFLGAAQAGEFAMVQLFRMRGGRVVGRDKRFLTGADETGLGEIIGAFVADYYTQATHVP 296

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLST 358
             ILL  E E+ +L      +Q G +V++  PK+G+K  +IE A  NA         L  
Sbjct: 297 PLILLPAEYEDAALWSEFLSRQAGRRVEMRTPKRGDKTDLIEMAQRNAAVGLDSEMALLE 356

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  L       ALP  P RIE YDNS++ G + V  MVV       + ++R+F + 
Sbjct: 357 RRGDHPGLDALKDVLALPERPWRIEGYDNSNLFGTNIVSGMVVFEGGRSRRGEHRRFKVR 416

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              ++  DD   M+  + RRF+  + ++                 PD++++DGG+GQ++A
Sbjct: 417 G--LEHPDDYESMKQTIYRRFTGSLADK--------------LPLPDLMLIDGGRGQVNA 460

Query: 479 AQGVLKKLNVENRITIISIAKGPKR-------------SAGMEKFFVKKGEALVLNMRDP 525
           A   LK+  V  ++ ++ +AK  +R               G E         L+L    P
Sbjct: 461 ALDALKEAGV--QVPVVGLAKREERLILPGRYGAQWWLETGTEV---GVDRELLLPHTHP 515

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  +  +RDE H +A++ HRK R +    S  D++ GIG  R+  LL+ F +++ ++ +
Sbjct: 516 ALRMLIGVRDEVHNYAVSYHRKLRGEGMLRSVFDDLPGIGQKRRDALLEHFTSLEDLAAA 575

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHTP 615
             E +A++ G++ + A  +        +  P
Sbjct: 576 PVEHIAAVPGMTLRAAQSVKEFLQAREAQLP 606


>gi|15806371|ref|NP_295077.1| excinuclease ABC subunit C [Deinococcus radiodurans R1]
 gi|81551289|sp|Q9RUN0|UVRC_DEIRA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|6459106|gb|AAF10924.1|AE001981_9 excinuclease ABC, subunit C [Deinococcus radiodurans R1]
          Length = 617

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 172/631 (27%), Positives = 292/631 (46%), Gaps = 47/631 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY      G  +Y+GKA NL+ R+  +  +   + + T +     ++ F     
Sbjct: 9   LPTTPGVYIFR-KGGVPIYIGKANNLRSRVSQHFKAGGKSGKFTKL---AESLEFISAAN 64

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEAL+LEAN+IK+ +P +N+LL+DDK +P++ +T+    P L   R       +Y+GP+
Sbjct: 65  EVEALVLEANLIKQHRPHYNVLLKDDKHYPFLKLTN-EAYPMLVVTRRVLKDGANYYGPY 123

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               AV +  + +   F LR  +    + + RPCL + + RC GPC      ++Y + V 
Sbjct: 124 PDASAVRRVKHLIDTMFPLRKNSGLPMQKKPRPCLNYHMGRCLGPCIDAAQPDEYRQAVE 183

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHNDSIYNR 241
           + K  L G    +  ++  +M  A   +D+E A   RDR+ A+       Q+   S    
Sbjct: 184 DVKALLEGRAAPVIARLKEDMKVAAQGQDFEQAARLRDRVQAVEKLFGTEQHAFVSEETD 243

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300
           +D          A +Q      G+  G    FL    E+   +I+  F+  +YT     P
Sbjct: 244 LDFLGAAQAGEFAMVQLFRMRGGRVVGRDKRFLTGADETGLGEIIGAFVADYYTQATHVP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLST 358
             ILL  E E+ +L      +Q G +V++  PK+G+K  +IE A  NA         L  
Sbjct: 304 PLILLPAEYEDAALWSEFLSRQAGRRVEMRTPKRGDKTDLIEMAQRNAAVGLDSEMALLE 363

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  L       ALP  P RIE YDNS++ G + V  MVV       + ++R+F + 
Sbjct: 364 RRGDHPGLDALKDVLALPERPWRIEGYDNSNLFGTNIVSGMVVFEGGRSRRGEHRRFKVR 423

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              ++  DD   M+  + RRF+  + ++                 PD++++DGG+GQ++A
Sbjct: 424 G--LEHPDDYESMKQTIYRRFTGSLADK--------------LPLPDLMLIDGGRGQVNA 467

Query: 479 AQGVLKKLNVENRITIISIAKGPKR-------------SAGMEKFFVKKGEALVLNMRDP 525
           A   LK+  V  ++ ++ +AK  +R               G E         L+L    P
Sbjct: 468 ALDALKEAGV--QVPVVGLAKREERLILPGRYGAQWWLETGTEV---GVDRELLLPHTHP 522

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  +  +RDE H +A++ HRK R +    S  D++ GIG  R+  LL+ F +++ ++ +
Sbjct: 523 ALRMLIGVRDEVHNYAVSYHRKLRGEGMLRSVFDDLPGIGQKRRDALLEHFTSLEDLAAA 582

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHTP 615
             E +A++ G++ + A  +        +  P
Sbjct: 583 PVEHIAAVPGMTLRAAQSVKEFLQAREAQLP 613


>gi|291516035|emb|CBK65245.1| Excinuclease ABC subunit C [Alistipes shahii WAL 8301]
          Length = 607

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 176/623 (28%), Positives = 301/623 (48%), Gaps = 50/623 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVYQ +D +G ++YVGKA +L+KR+ SY   S  H+ ++  ++ QI  IR  V  
Sbjct: 16  LPLSPGVYQFVDRSGTIIYVGKAKSLRKRVSSYFVQSKEHSAKVRVLVKQIVEIRHIVVG 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE ++IK L+PR+NILL+DDK++P+I++  +H  P +   R  +     YFGP
Sbjct: 76  SETDALLLENSLIKSLQPRYNILLKDDKTYPWIVVRREH-FPRVQSTRILTRDGSQYFGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           + SV      ++ ++    LR+C  +     + + +   CL + +  C  PC G  S E+
Sbjct: 135 YGSVMMQRSVLDFIREVIPLRTCKLNLAPELIAKDKYTVCLQYHLGNCKAPCVGRQSEEE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y + V      L G    +++ +   M +A  +  +E A  ++ RL AL +    +    
Sbjct: 195 YAQLVGMVVSVLKGDLRPVRQYLEGEMARAAGELKFELAQRYKQRLDALDNYAGRSVIVS 254

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                +D FSL  + ++A         G   G  T  L T   +    +L+  ++    +
Sbjct: 255 AKIVDVDVFSLLPDDDVAWCNFVRIRHGSVVGVQTVKLSTGVGADERDMLTLAIQHIVEN 314

Query: 297 ---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                    +++      T L E          V  TVPK+GEK +++E +  +A     
Sbjct: 315 IAGGELSREVIVPLLPSTTLLFE---------GVTFTVPKRGEKLELLEFSRKSARIYRA 365

Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           ++L        E   + ++    K+  L   P+ IE +DNS++ G   V   VV  +   
Sbjct: 366 EQLKNLEIKNPERYTERLMNAVQKELRLDRQPRHIECFDNSNLQGAHPVASCVVFRDGKP 425

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            + +YR FN+    V   DD A MR V+ RR+++L+                    PD++
Sbjct: 426 SRKEYRHFNIKT--VTGADDYASMREVVFRRYTRLMAEG--------------AEMPDLI 469

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           I DGGKGQ+     VL++L ++  I I  +AK  +     E         + +    P+ 
Sbjct: 470 IADGGKGQMGVIHEVLERLGLD--IPIAGLAKDDRHRTA-ELLCGFPPVLVGIRPTSPLF 526

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           +F+  +++E HRFA++ HR++R KA  +S L++I G+G    + LL+ F TV+ +  ++ 
Sbjct: 527 HFLAHIQEEVHRFAVSFHRQKRSKAFIHSELEQIEGVGDKTVQTLLRHFRTVEKVRAANI 586

Query: 587 ETLASIEGISKKIACKIYNHFHK 609
           E L+++ G     A KI   F K
Sbjct: 587 EELSALVG--AAKAKKIRAFFEK 607


>gi|320528427|ref|ZP_08029589.1| excinuclease ABC subunit C [Solobacterium moorei F0204]
 gi|320131341|gb|EFW23909.1| excinuclease ABC subunit C [Solobacterium moorei F0204]
          Length = 594

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 178/621 (28%), Positives = 291/621 (46%), Gaps = 45/621 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG YQM D  G ++YVGKA NL  R+  Y     H  + T M+S I++  F 
Sbjct: 9   KLKNLPNEPGSYQMKDKNGEIIYVGKAKNLHNRMNQYFVGA-HDFKTTKMVSNIDDFDFI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGS 120
           VT +E EAL+LE N+IK+ +P++NI   DD S+PYI +T K K P L   RD+    +  
Sbjct: 68  VTRSEKEALVLEINLIKKYRPKYNIQFIDDSSYPYIKLT-KEKYPRLLIARDTKKDKKAK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF    A   T+  LQ  +  R C         + CL + + +C GPC  +I  + Y
Sbjct: 127 YFGPFPDATAARTTLKLLQSLYPFRRCTHLEP----KVCLYYHMHQCIGPCEFDIDPKVY 182

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHND 236
            E   +  +F++G   +++ ++   M +A+   ++E A  +++ L ++ H     QN   
Sbjct: 183 DEMSDKVVRFMNGDTKDVEAELQTKMLEASQALEFEKAQEYKEMLESIRHVVNDKQNIEK 242

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D F+ Y  K    I       G                   +  + FL Q+Y D
Sbjct: 243 DNRGSRDVFAWYTKKGYLAITGFLVREGTILNKEFRL--RPLYGEAEEEFTSFLVQYYQD 300

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P    ++L  E + T+L ++         + I  P++G K K+++  + NA +    K 
Sbjct: 301 HPSARELVLPMELDVTALQDVL-------DMPIFQPQKGYKVKLLDMCIENAKKQLDLKF 353

Query: 357 STEISHQMILKDFTKKFAL--PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           +       + +    +      H   R+E++DNSHI G   V   VV  +    +  YR 
Sbjct: 354 NAVARQDTLTEQAVAQLCDIAKHPMNRVELFDNSHISGAFTVASCVVYEDGYPDRKSYRL 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + LH        D   M+ V+ RR+ +++                    PD +I+DGG+ 
Sbjct: 414 YKLHT----GNSDVDSMKEVIYRRYFRMLNEG--------------TRMPDGIIVDGGRT 455

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+ AA+ +L  L++ + I ++ + K  K S          G+   ++    + + + R++
Sbjct: 456 QIDAAKEILDSLDLSDTIKLMGLVKDDKHSTNA--LMDANGDIFDIDKDSGLFFLLTRMQ 513

Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HR AIT HRK R KA   S LDEI G+GP RK+LLL+ FG    +  ++ E +A I 
Sbjct: 514 DEVHRVAITYHRKLRAKAQTKSVLDEITGVGPKRKKLLLKEFGNFTNLKAATVEDIAKI- 572

Query: 594 GISKKIACKIYNHFHKNTSHT 614
            I  ++A  +Y+  H+   +T
Sbjct: 573 -IPSEVAQAVYDALHQTYENT 592


>gi|81240555|gb|ABB61265.1| excinuclease ABC, subunit C [Shigella dysenteriae Sd197]
          Length = 553

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 197/568 (34%), Positives = 306/568 (53%), Gaps = 31/568 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TVT TE EALLLE 
Sbjct: 1   MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + V   + FLSG
Sbjct: 120 LALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNK 251
            +  +  ++   M  A+   ++E A   RD++ A+  +          + +D   +  + 
Sbjct: 180 KDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307
            +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
              + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T KLS + +    L 
Sbjct: 300 NLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLT 359

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
                  LP +  R+E +D SH MG   V   VV   NG ++ +YR++N+    +   DD
Sbjct: 360 ALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDD 416

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M  VL RR+ + I + +                PDV+++DGGKGQL+ A+ V  +L+
Sbjct: 417 YAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQLAQAKNVFAELD 461

Query: 488 V---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ +RDE+H  AI 
Sbjct: 462 VSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIG 521

Query: 544 THRKRRKKAA-YSPLDEINGIGPLRKRL 570
            HRK+R K    S L+ I G+GP R++ 
Sbjct: 522 GHRKKRAKVKNTSSLETIEGVGPKRRQN 549


>gi|34581500|ref|ZP_00142980.1| excinuclease ABC subunit C [Rickettsia sibirica 246]
 gi|28262885|gb|EAA26389.1| excinuclease ABC subunit C [Rickettsia sibirica 246]
          Length = 639

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 231/630 (36%), Positives = 344/630 (54%), Gaps = 24/630 (3%)

Query: 1   MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+ +  PE  GVY+M D+  +VLYVGKA NL+KR+ +Y   +N  ++   MI+    +
Sbjct: 11  IKSKLIDAPERSGVYRMFDVNKQVLYVGKAKNLKKRLTNY-IKSNLDNKTLRMIANTCFL 69

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I +   H  P L K+R  +   
Sbjct: 70  EYSITNSEVEALLLEAQLIKKFQPKFNILLKDCKSFPFIKLRLDHDFPQLLKYRGKTLSD 129

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G +FGPFAS   V  T+  LQ+ F LRSC D+ F  RTRPCL ++IKRC  PC G+I+ E
Sbjct: 130 GKFFGPFASSAEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V + K FL G    L+E ++R M + + +  +E A   RDR+ ALS++Q      
Sbjct: 190 DYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++       C++   +  GQ  G   +F  +   ST  ++L YFL QFY  
Sbjct: 250 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309

Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I+++ E  +   ++E         ++ ITVP +G K K+++ A  NA  S  Q 
Sbjct: 310 QHVPAAIIINHEINDKENVIEAIKKINNILQINITVPNKGGKAKLVQNAETNALFSLEQY 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L     +Q I+ +  + F L  IP+RIEIYDNSHI G  AVG MVV G+ GF K +YR F
Sbjct: 370 LKKFAKNQEIMFEIKELFGLSEIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVF 429

Query: 416 NLH-PNDVKTQDDCAMMRMVLERRFS--------------QLIKNEENLNFHPKKQEYSF 460
           N+H P+ V    +    + +++  F                     + L     +     
Sbjct: 430 NVHAPSFVCHSRESGDPKRLMDSCFRGNGIKNCGGDIKGDDYEMLRQVLTRRLTRLRQEP 489

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
              P ++I+DGGKG L   + V+ K   E  I  + ++KG  R+AG E+F V   E   L
Sbjct: 490 HKLPSLMIIDGGKGHLGVVKEVMDKF--EMNIPFVCMSKGVDRNAGFEQFHVIGKEVFTL 547

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579
           +   P++ ++Q LRDEAH FAI  HR  R +A   S LD+I G+G  RK+ LL  FG+ K
Sbjct: 548 DKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISRLDDIEGVGETRKKALLHYFGSYK 607

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609
            +  ++   LA + GI+K +A  I+N  H+
Sbjct: 608 AVCDATIYELAKVNGINKLLAEMIFNVLHR 637


>gi|302330801|gb|ADL20995.1| UvrABC system protein C [Corynebacterium pseudotuberculosis 1002]
          Length = 669

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 174/635 (27%), Positives = 294/635 (46%), Gaps = 69/635 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y    +    R   M++  +++ +TV 
Sbjct: 13  SIPTDPGVYKFRDSHGRVVYVGKAKNLRSRLSNYFQDLSVLHPRTRQMVTTASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +EVEAL LE   IK+  PRFN+  RDDK++P + ++   + P  + +R        YFG
Sbjct: 73  SSEVEALQLEYTWIKKFDPRFNVKYRDDKTYPMLAVSVGERFPRAFFYRGPQRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   AV +T++ L R F +R+C+  VF       RPCLL  I +CS PC G ++ +++
Sbjct: 133 PYSHAWAVRETLDLLTRVFPVRTCSKGVFNRHESLGRPCLLGYIDKCSAPCIGRVTEQEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V+    F++G    +   +   M  A  + D+E A   RD + A+  I      +  
Sbjct: 193 RDIVNGFCSFMAGKTDAVVASLNSQMLTAAEELDFERAARLRDDIHAVQKITEQQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT--DSESTNAQILSYFLRQFYT 295
                D  ++  +   A IQ      G+ +G   + ++   DSE    ++L  FL +FYT
Sbjct: 253 DGTDADVIAISADDLEASIQLFHVRAGRVKGQRGWIVERTGDSEEELQELLQAFLIRFYT 312

Query: 296 DKP-------------------------------------CPENILLSEEAEETSLLEIS 318
           D                                        P+ +L+     +    +++
Sbjct: 313 DAVELEEETNKEEENVIRRGVDQFSYVDEHLSSHQLRGSMIPKEVLVEIAPLDLEHTKVA 372

Query: 319 FFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFA 374
             +  G  V + VP +G+KR ++E    NA     +   +++    +    L++  +   
Sbjct: 373 LSELRGSLVDLRVPARGDKRALMETVHANAVETLRQHKLKRVGDLTARSAALQELQEALF 432

Query: 375 LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRM 433
           L   P RIE  D SHI G   V  +VV  +    K+ YR++ +         +D A +  
Sbjct: 433 LEEAPLRIECIDISHIQGTDVVASLVVFEDGLPKKSDYRRYKIKDAAGDGHSNDVASIAE 492

Query: 434 VLERRFSQLIKNEENLNFHPK-----------KQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           V+ RRF +  K+   +    +           +    F   P + I+DGG  Q++AA  +
Sbjct: 493 VVRRRFIRHHKDRLTVPEAEEFDGSTFTDETVEHSKRFAYPPQLFIVDGGSPQVAAADAI 552

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
            ++L V N + ++ IAK  +     E +  +  E ++L      +Y +Q++RDEAHRFAI
Sbjct: 553 FEELGV-NDVALVGIAKRLE-----ELWIPQDDEPVILPRNSQAMYLVQQIRDEAHRFAI 606

Query: 543 TTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFG 576
             HR++R K    S LD I G+G  R+  L++ FG
Sbjct: 607 AFHRQQRSKRMRTSALDNIKGLGQTRRTELVKHFG 641


>gi|238650635|ref|YP_002916487.1| excinuclease ABC subunit C [Rickettsia peacockii str. Rustic]
 gi|259710347|sp|C4K1I8|UVRC_RICPU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|238624733|gb|ACR47439.1| excinuclease ABC subunit C [Rickettsia peacockii str. Rustic]
          Length = 639

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/630 (36%), Positives = 343/630 (54%), Gaps = 24/630 (3%)

Query: 1   MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+ +  PE  GVY+M D+  +VLYVGKA NL+KR+ +Y   +N  ++   MI+    +
Sbjct: 11  IKSKLIDAPERSGVYRMFDVNKQVLYVGKAKNLKKRLTNY-IKSNLDNKTLRMIANTCFL 69

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I +   H  P L K+R  +   
Sbjct: 70  EYSITNSEVEALLLEAQLIKKFQPKFNILLKDCKSFPFIKLRLDHDFPQLLKYRGKTLSD 129

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G +FGPFAS   V  T+  LQ+ F LRSC D+ F  RTRPCL ++IKRC  PC G+I+ E
Sbjct: 130 GKFFGPFASSAEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V + K FL G    L+E ++R M + + +  +E A   RDR+ ALS++Q      
Sbjct: 190 DYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++       C++   +  GQ  G   +F  +   ST  ++L YFL QFY  
Sbjct: 250 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309

Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I+++ E  +   ++E         ++ ITVP +G K K+++ A  NA  S  Q 
Sbjct: 310 QHVPAAIIINHEINDKENVIEAIKKINNILQLNITVPNKGGKAKLVQNAETNALFSLEQY 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L     +Q I+ +  + F L  IP+RIEIYDNSHI G  AVG MVV G+ GF K +YR F
Sbjct: 370 LKKFAKNQEIMFEIKELFGLSEIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVF 429

Query: 416 NLH-PNDVKTQDDCAMMRMVLERRFS--------------QLIKNEENLNFHPKKQEYSF 460
           N+H P+ V    +    + +++  F                     + L     +     
Sbjct: 430 NVHAPSLVCHSRESGDPKRLMDSCFRGNGIKNCGGDIKGDDYEMLRQVLTRRLTRLRQEP 489

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
              P ++I+DGGKG L   + V+ K   E  I  + ++KG  R+ G E+F V   E   L
Sbjct: 490 HKLPSLMIIDGGKGHLGVVKEVMDKF--EMNIPFVCMSKGVDRNTGFEQFHVIGKEVFTL 547

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579
           +   P++ ++Q LRDEAH FAI  HR  R +A   S LD+I G+G  RK+ LL  FG+ K
Sbjct: 548 DKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISRLDDIEGVGETRKKALLHYFGSYK 607

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609
            +  ++   LA + GI+K +A  I+N  H+
Sbjct: 608 AVCDATIYELAKVNGINKLLAEMIFNVLHR 637


>gi|310657857|ref|YP_003935578.1| uvrABC system protein c (protein uvrc) (excinuclease ABC subunit c)
           [Clostridium sticklandii DSM 519]
 gi|308824635|emb|CBH20673.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Clostridium sticklandii]
          Length = 587

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 184/612 (30%), Positives = 317/612 (51%), Gaps = 39/612 (6%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVTCTEVEALLLE 73
           M D   +V+YVGKA +L+ R++ Y  S  +   ++  M+S I+   + VT +E+EAL+LE
Sbjct: 1   MKDKDKKVIYVGKAISLKNRVRQYFQSKKNMDAKVRAMVSHIDEFEYIVTDSEMEALILE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
            N+IK  KP++NILLRDDK++PYI +T     P + K R     +  YFGP+ +   V +
Sbjct: 61  NNLIKEYKPQYNILLRDDKTYPYIKVTLNEYFPRVLKVRKVEKDKAKYFGPYTNAFIVNE 120

Query: 134 TINSLQRTFFLRSCADSVFR---HRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKF 190
           T++ ++  + +R+C   + R    + RPCL   IK+C GPCTG++   +YM+ ++E   F
Sbjct: 121 TLDVIKEIYPIRTCTRDIKRSIEKKERPCLNLYIKKCVGPCTGKVDEAEYMKMIYEIIDF 180

Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSL 247
           LSG + ++   +   M QA    D+E A   RD+++++  +      +       D  ++
Sbjct: 181 LSGKSEDMISILEEKMRQAAKNLDFEEAATLRDKISSMKGMLERQKIVSASTIDQDYIAV 240

Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPENILLS 306
              ++L+C+Q  F   G+  G   F       S   +I+S F++QFY      P+ +++ 
Sbjct: 241 AKEEDLSCVQVFFVRGGKVVGRENFIFDKSRNSQAEEIISSFIKQFYMSVNYVPKELVVD 300

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISH 362
            + E+  ++      + G KV+ITVP++G+K+ +++    NA     +    K++     
Sbjct: 301 TDFEDMQIMSDWLSSKKGQKVQITVPQKGDKKHLLDLVRKNAFETIKQKSNLKMAKLERT 360

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
             ++K+  +   L  +P R+E +D S+I G  +VG  VV       K  YR++ +    V
Sbjct: 361 VGVMKELQEFLQLDEMPIRVEAFDISNIQGVDSVGAQVVFVNGEKAKKLYRRYKIKS--V 418

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              +D A M  ++ RR                      P  PD++++DGGKGQ+S A+ V
Sbjct: 419 DGPNDYASMEEIIRRRLKH-------------------PDLPDLILMDGGKGQVSVAKKV 459

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           + +  +   I ++ + K  +           + +A+ L+    I  FI  +++E HRFAI
Sbjct: 460 IAEEGLS--IPVLGMYKDSRHKT---LGLTTENQAVELSKHSLIYRFIASVQEEVHRFAI 514

Query: 543 TTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           + HR  R K    S LDEI+GIG  RK  L+  F T++ +  ++ E LAS+EG++KK A 
Sbjct: 515 SYHRSLRDKGMEKSELDEISGIGKTRKMALISEFKTIERLKNATMEELASVEGMNKKSAQ 574

Query: 602 KIYNHFHKNTSH 613
            ++ HF K    
Sbjct: 575 AVFEHFRKGQKS 586


>gi|237720612|ref|ZP_04551093.1| excinuclease ABC subunit C [Bacteroides sp. 2_2_4]
 gi|229450363|gb|EEO56154.1| excinuclease ABC subunit C [Bacteroides sp. 2_2_4]
          Length = 613

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 168/625 (26%), Positives = 301/625 (48%), Gaps = 47/625 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P +++ R       SY+GP
Sbjct: 79  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E 
Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCSLNLTPENIRAGKFNVCLEYHIKNCAGPCIGLQSQED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    +   +   M     +  +E A   +++   + + ++ ++ + 
Sbjct: 198 YLKNIDEIKEILKGNTQEISRMLLERMQTLAGEMKFEEAQKVKEKYLLIENYRSKSEVVS 257

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
             +    ++  +    N A I       G      TF  K     +  ++L+  + +   
Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L  I F           VP++G+K+K+++ +++N  +    +
Sbjct: 318 RYKSQSREIIVPFELDLELNNIVFT----------VPQRGDKKKLLDLSILNVKQYKADR 367

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 368 LKQAEKLNPEQRSMRLMKEIQQELHLDRPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I 
Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------APLPDLIIT 471

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK   R    E  F    + + +  + P+   
Sbjct: 472 DGGKGQMEVVREVIED-ELNLTIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 529

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAI+ HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEASFEE 589

Query: 589 LASIEGISKKIACKIYNHFHKNTSH 613
           ++++  I +  A  +       +S 
Sbjct: 590 ISAV--IGEAKAKTVKAGLSDESSE 612


>gi|229586905|ref|YP_002845406.1| excinuclease ABC subunit C [Rickettsia africae ESF-5]
 gi|259710346|sp|C3PP03|UVRC_RICAE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|228021955|gb|ACP53663.1| Excinuclease ABC subunit C [Rickettsia africae ESF-5]
          Length = 639

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 231/630 (36%), Positives = 344/630 (54%), Gaps = 24/630 (3%)

Query: 1   MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+ +  PE  GVY+M D+  +VLYVGKA NL+KR+ +Y   +N  ++   MI+    +
Sbjct: 11  IKSKLIDAPERSGVYRMFDVNKQVLYVGKAKNLKKRLTNY-IKSNLDNKTLRMIANTCFL 69

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I +   H  P L K+R  +   
Sbjct: 70  EYSITNSEVEALLLEAQLIKKFQPKFNILLKDCKSFPFIKLRLDHDFPQLLKYRGKTLSD 129

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G +FGPFAS   V  T+  LQ+ F LRSC D+ F  RTRPCL ++IKRC  PC G+I+ E
Sbjct: 130 GKFFGPFASSAEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V + K FL G    L+E ++R M + + +  +E A   RDR+ ALS++Q      
Sbjct: 190 DYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++       C++   +  GQ  G   +F  +   ST  ++L YFL QFY  
Sbjct: 250 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309

Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I+++ E  +   ++E         ++ ITVP +G K K+++ A  NA  S  Q 
Sbjct: 310 QHVPAAIIINHEINDKENVIEAIKKINNILQINITVPNKGGKAKLVQNAETNALFSLEQY 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L     +Q I+ +  + F L  IP+RIEIYDNSHI G  AVG MVV G+ GF K +YR F
Sbjct: 370 LKKFAKNQEIMFEIKELFGLSEIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVF 429

Query: 416 NLH-PNDVKTQDDCAMMRMVLERRFS--------------QLIKNEENLNFHPKKQEYSF 460
           N+H P+ V    +    + +++  F                     + L     +     
Sbjct: 430 NVHAPSLVCHSRESGDPKRLMDSCFRGNGIKNCGGDIKGDDYEMLRQVLTRRLTRLRQEP 489

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
              P ++I+DGGKG L   + V+ K   E  I  + ++KG  R+AG E+F V   E   L
Sbjct: 490 HKLPSLMIIDGGKGHLGVVKEVMDKF--EMNIPFVCMSKGVDRNAGFEQFHVIGKEVFTL 547

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579
           +   P++ ++Q LRDEAH FAI  HR  R +A   S LD+I G+G  RK+ LL  FG+ K
Sbjct: 548 DKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISRLDDIEGVGETRKKALLHYFGSYK 607

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609
            +  ++   LA + GI+K +A  I+N  H+
Sbjct: 608 AVCDATIYELAKVNGINKLLAEMIFNVLHR 637


>gi|281491329|ref|YP_003353309.1| excinuclease ABC subunit C [Lactococcus lactis subsp. lactis KF147]
 gi|281375070|gb|ADA64588.1| Excinuclease ABC, subunit C [Lactococcus lactis subsp. lactis
           KF147]
          Length = 668

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 177/664 (26%), Positives = 296/664 (44%), Gaps = 85/664 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G V+YVGKA NL+ R++SY H +++T +   ++S+I ++ + 
Sbjct: 8   KLELLPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  + +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+  K P L   R       +Y
Sbjct: 67  VVGSNIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C      H  + C  F I +C  P    +  + Y 
Sbjct: 126 FGPYPDVKAANEVKRLLDRIFPFRKCGL----HEKKVCFYFHIHQCLCPVVNHVDPQVYK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E K+FL+G +  + +++   M  ++   ++E A  +RD + A+  ++     +   
Sbjct: 182 DMTQEVKEFLTGSDKKIVKELEAKMMISSDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +          +  
Sbjct: 242 LKDRDVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHM 301

Query: 299 CPENILLSEEAE------------------------------------------------ 310
            P  I + ++ +                                                
Sbjct: 302 MPREIFIPQDIDKESVEAVVAASQEGNLLTNAQAKEVDAKVFTAKTLKFSDQKDVEQSIV 361

Query: 311 --ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQM 364
             +  L           K +I  P +GEK++++  A  NA               +    
Sbjct: 362 KLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDILKTTK 421

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            +++  K   +P    RIE +DNS+IMG S V  MVV  +    K  YRK+ +    V  
Sbjct: 422 AVENLGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVG 478

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A MR V+ RR+S+ +K E  L              PD++ +DGG GQ++ A+ VLK
Sbjct: 479 ADDYASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNIAKQVLK 524

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L +   I +  + K  K     E  F    + + L+ +    + + R++DE HRFAIT 
Sbjct: 525 ELGLS--IPVAGMQKNDKHQTS-ELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRFAITF 581

Query: 545 HRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR+ R K  +S  LD I G+GP RK+ LL +F  +K I  +S + +A   GI  ++A ++
Sbjct: 582 HRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEA-GIPYEVAERV 640

Query: 604 YNHF 607
               
Sbjct: 641 KTTL 644


>gi|319900539|ref|YP_004160267.1| Excinuclease ABC subunit C [Bacteroides helcogenes P 36-108]
 gi|319415570|gb|ADV42681.1| Excinuclease ABC subunit C [Bacteroides helcogenes P 36-108]
          Length = 616

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 177/622 (28%), Positives = 311/622 (50%), Gaps = 49/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL++R+ SY +  +   +   ++S+I +IR+ V  
Sbjct: 16  NLPENPGIYQYLNAEGVIIYVGKAKNLKRRVSSYFNREHEPGKTRVLVSKIADIRYIVVN 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 76  SEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRKIIRNGSSYYGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G+ + E 
Sbjct: 135 YSHIPSMYAVLDLIKHLYPLRTCTLNLSPENIRAGKFNVCLEYHIKNCAGPCIGKQTQED 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G   +++  + + M        YE A   ++R   + + +  ++ + 
Sbjct: 195 YLKNIAEIKEILKGNTQDIERMLFQQMQDLAADMKYEEAQKVKERYLLIENYRCKSEVVS 254

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++  +       A I       G      TF  K     +  ++LS  + +  
Sbjct: 255 NVLHNIDVFSIEEDNDEKSAFINYLHITNGAINQAFTFEYKKRLNESKEELLSLGIIEMR 314

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  L            V  T+P++G+K+K++E +++N  +    
Sbjct: 315 ERYKSLSREIIVPFEIDMEL----------KDVVFTIPQRGDKKKLLELSILNVKQYKAD 364

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     +LK+  ++  L  +P +IE +DNS+I G  AV   VV  +    
Sbjct: 365 RLKQAEKLNPEQRAVRLLKEIQQELHLERLPMQIECFDNSNIQGSDAVAACVVFIKGKPS 424

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V+  DD A M+ V++RR+ + ++ +                 PD++I
Sbjct: 425 KKDYRKYNIKT--VEGPDDYASMKEVVKRRYQRAVEEK--------------TPLPDLLI 468

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+SA + V+ +L +   I I  +AK  K     E  +    + + L    P+  
Sbjct: 469 TDGGKGQMSAVKEVIDELCL--NIPIAGLAKDGKHRTS-ELLYGFPPQTIGLKQNTPLFR 525

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAI  HR +R K    S LDEI GIG   K  LL+ F +VK I  +S E
Sbjct: 526 LLAQIQDEVHRFAIAFHRDKRSKRQTASALDEIKGIGEKTKAALLKEFKSVKRIKEASFE 585

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            L SI G  +  A  I ++F +
Sbjct: 586 ELTSITG--EAKANIIRSYFAE 605


>gi|328950288|ref|YP_004367623.1| UvrABC system protein C [Marinithermus hydrothermalis DSM 14884]
 gi|328450612|gb|AEB11513.1| UvrABC system protein C [Marinithermus hydrothermalis DSM 14884]
          Length = 603

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 181/617 (29%), Positives = 293/617 (47%), Gaps = 36/617 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PGVY        V+YVGKA  L+ R+ SY H+     RI     + +++ F VT  
Sbjct: 9   LPEAPGVYLWK-AGDEVIYVGKAKRLKARVTSYFHAEGKPARIA---QEASSLEFIVTRD 64

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E+EALLLEAN+IK   PR+N+LL+DDK +P++ +T+    P L   R        Y+GPF
Sbjct: 65  EIEALLLEANLIKAHHPRYNVLLKDDKHYPFLKLTN-EPFPILLVTRRVQDDGARYWGPF 123

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               AV +    + R F LR  +    + R  PCL   + RC  PC G+     Y   V 
Sbjct: 124 PDAGAVRRIKRLIDRVFPLRKNSGYPMKRRRFPCLNHAMGRCLAPCVGQADPAAYAAVVR 183

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQNHNDSIYNR 241
           + ++ L G    L  ++   M+QA  + ++E A   RD++       +  Q         
Sbjct: 184 QVEQVLDGRIDALIAQMEARMHQAARETNFELAAEIRDQIQALKAFFNADQQAYALELGD 243

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-PCP 300
           +D          A +Q      G+  G    F++  +E+ +A+IL  FLR+ Y +  P P
Sbjct: 244 LDFLGFARAGGYAMVQLYQMRGGRILGRANRFVEGVNEAEDAEILEAFLREHYLEATPLP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS--T 358
             +LL    E  + L     ++ G KV + VP++GEK +++E A  NA      +L    
Sbjct: 304 PVVLLPFHVEAEAPLAAFLSQRAGRKVALRVPQRGEKARLLEFAAKNARLGLEAELKRLE 363

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  LK   +   L H P RIE +D S++MG + V  + V+      K++YR+  + 
Sbjct: 364 RKGDHPALKALAEVLRLSHRPYRIEGFDISNLMGEAVVASIAVLEGGRPKKSEYRRMRIR 423

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            N     +D   +   + RRF+  + ++                 PD++++DGG GQ+ A
Sbjct: 424 -NLAGRPNDYVAIAEAVYRRFTGSLADK--------------LPVPDLLLIDGGLGQVRA 468

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L++  +   + ++ +AK        E   +  GE + L +  P L  +  LRDE H
Sbjct: 469 AAQALERAGLS--VPLVGLAKRE------ETLVLPSGERVTLPLTHPALQLLIHLRDETH 520

Query: 539 RFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           R  +  +RK R +K   S  D I GIGP RK++LL+ F T++ + ++  ETLA + G+++
Sbjct: 521 RNGLRYNRKLRTQKHLKSLFDGIPGIGPRRKQVLLEHFSTLEELRQTPLETLARLPGMNR 580

Query: 598 KIACKIYNHFHKNTSHT 614
           K A  +     ++    
Sbjct: 581 KAAQAVLEALKQHAPAQ 597


>gi|116511657|ref|YP_808873.1| excinuclease ABC subunit C [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107311|gb|ABJ72451.1| Excinuclease ABC subunit C [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 658

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 179/669 (26%), Positives = 300/669 (44%), Gaps = 88/669 (13%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           MP+ PG Y   D  G V+YVGKA NL+ R++SY H +++T +   ++S+I ++ + V  +
Sbjct: 1   MPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWIVVGS 59

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+  K P L   R       +YFGP+
Sbjct: 60  NIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATYFGPY 118

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +    L R F  R C      H  + C  F I +C  P    +  + Y +   
Sbjct: 119 PDVKAANEVKRLLDRIFPFRKCG----LHEKKVCFYFHIHQCLCPVVNHVDPQVYKDMTQ 174

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242
           E K+FL+G +  + +++   M  A+   ++E A  +RD + A+  ++     +       
Sbjct: 175 EVKEFLTGSDKKIVKELEGKMISASDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQDLKDR 234

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  Y +K   C+Q  F   G+            +++    +          +   P  
Sbjct: 235 DVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHMMPRE 294

Query: 303 ILLSEEAE--------------------------------------------------ET 312
           I + ++ +                                                  + 
Sbjct: 295 IFIPQDIDKDSVEAVVAASQEGNLLTKAQAKAVDAKVFTAKTLKFSDQEDVEQSIVKLDK 354

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKD 368
            L           K +I  P +GEK++++  A  NA               +     +++
Sbjct: 355 ELSSEKRLSSLLAKTQIIQPSRGEKKQLVNMATKNAQTQLQLKFDVAERDILKTTKAVEN 414

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
             K   +P    RIE +DNS+IMG S V  MVV  +    K  YRK+ +    V   DD 
Sbjct: 415 LGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVGADDY 471

Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488
           A MR V+ RR+S+ +K E  L              PD++ +DGG GQ++ A+ VL++L +
Sbjct: 472 ASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNIAKEVLRELGL 517

Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
              I +  + K  K     E  F    E + L+ +    + + R++DE HRFAIT HR+ 
Sbjct: 518 A--IPVAGMQKNDKHQTS-ELLFGDPLEVVPLSRQSQEFFLLTRIQDEVHRFAITFHRQL 574

Query: 549 RKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R K  +S  LD I G+GP RK+ LL +F  +K I  ++ + +A   G+  ++A ++ N  
Sbjct: 575 RGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEATVQEVAEA-GVPYEVAERVKNTL 633

Query: 608 ---HKNTSH 613
              HK+  +
Sbjct: 634 SAPHKSDEN 642


>gi|328676765|gb|AEB27635.1| Excinuclease ABC subunit C [Francisella cf. novicida Fx1]
          Length = 612

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 184/615 (29%), Positives = 317/615 (51%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ R+ SY        +   M+ QI  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC  PC G +S ++Y E 
Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G    + E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +   L    KRIE +D SH  G + +   V+  + G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVLYTDEGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K  DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKAGDDYAAIYQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREYGIQDKVELVSLGKGIERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|300071302|gb|ADJ60702.1| excinuclease ABC subunit C [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 658

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 179/669 (26%), Positives = 300/669 (44%), Gaps = 88/669 (13%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           MP+ PG Y   D  G V+YVGKA NL+ R++SY H +++T +   ++S+I ++ + V  +
Sbjct: 1   MPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWIVVGS 59

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+  K P L   R       +YFGP+
Sbjct: 60  NIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATYFGPY 118

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A  +    L R F  R C      H  + C  F I +C  P    +  + Y +   
Sbjct: 119 PDVKAANEVKRLLDRIFPFRKCG----LHEKKVCFYFHIHQCLCPVVNHVDPQVYKDMTQ 174

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242
           E K+FL+G +  + +++   M  A+   ++E A  +RD + A+  ++     +       
Sbjct: 175 EVKEFLTGSDKKIVKELEGKMISASDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQDLKDR 234

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  Y +K   C+Q  F   G+            +++    +          +   P  
Sbjct: 235 DVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHMMPRE 294

Query: 303 ILLSEEAE--------------------------------------------------ET 312
           I + ++ +                                                  + 
Sbjct: 295 IFIPQDIDKDSVEAVVAASQEGNLLTKAQAKAVDAKVFTAKTLKFSDQKDVEQSIVKLDK 354

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKD 368
            L           K +I  P +GEK++++  A  NA               +     +++
Sbjct: 355 ELSSEKRLSSLLAKTQIIQPSRGEKKQLVNMATKNAQTQLQLKFDVAERDILKTTKAVEN 414

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
             K   +P    RIE +DNS+IMG S V  MVV  +    K  YRK+ +    V   DD 
Sbjct: 415 LGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVGADDY 471

Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488
           A MR V+ RR+S+ +K E  L              PD++ +DGG GQ++ A+ VL++L +
Sbjct: 472 ASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNIAKEVLRELGL 517

Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
              I +  + K  K     E  F    E + L+ +    + + R++DE HRFAIT HR+ 
Sbjct: 518 A--IPVAGMQKNDKHQTS-ELLFGDPLEVVPLSRQSQEFFLLTRIQDEVHRFAITFHRQL 574

Query: 549 RKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R K  +S  LD I G+GP RK+ LL +F  +K I  ++ + +A   G+  ++A ++ N  
Sbjct: 575 RGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEATVQEVAEA-GVPYEVAERVKNTL 633

Query: 608 ---HKNTSH 613
              HK+  +
Sbjct: 634 SAPHKSDEN 642


>gi|160883396|ref|ZP_02064399.1| hypothetical protein BACOVA_01365 [Bacteroides ovatus ATCC 8483]
 gi|293368667|ref|ZP_06615274.1| excinuclease ABC, C subunit [Bacteroides ovatus SD CMC 3f]
 gi|156111116|gb|EDO12861.1| hypothetical protein BACOVA_01365 [Bacteroides ovatus ATCC 8483]
 gi|292636309|gb|EFF54794.1| excinuclease ABC, C subunit [Bacteroides ovatus SD CMC 3f]
          Length = 611

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 167/623 (26%), Positives = 299/623 (47%), Gaps = 47/623 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P +++ R       SY+GP
Sbjct: 79  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E 
Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCSLNLTPENIRAGKFNVCLEYHIKNCAGPCIGLQSQED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    +   +   M     +  +E A   +++   + + ++ ++ + 
Sbjct: 198 YLKNIDEIKEILKGNTQEISRMLLERMQTLAGEMKFEEAQKVKEKYLLIENYRSKSEVVS 257

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
             +    ++  +    N A I       G      TF  K     +  ++L+  + +   
Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L  I F           VP++G+K+K+++ +++N  +    +
Sbjct: 318 RYKSQSREIIVPFELDLELNNIVFT----------VPQRGDKKKLLDLSILNVKQYKADR 367

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 368 LKQAEKLNPEQRSMRLMKEIQQELHLDRPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I 
Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------TPLPDLIIT 471

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK   R    E  F    + + +  + P+   
Sbjct: 472 DGGKGQMEVVREVIED-ELNLTIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 529

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAI+ HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEASFEE 589

Query: 589 LASIEGISKKIACKIYNHFHKNT 611
           ++++  I +  A  +        
Sbjct: 590 ISAV--IGEAKAKTVKEGLGNEQ 610


>gi|260172654|ref|ZP_05759066.1| excinuclease ABC subunit C [Bacteroides sp. D2]
 gi|315920945|ref|ZP_07917185.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694820|gb|EFS31655.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 611

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 167/623 (26%), Positives = 299/623 (47%), Gaps = 47/623 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P +++ R       SY+GP
Sbjct: 79  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFRTRKIIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E 
Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCSLNLTPENIRAGKFNVCLEYHIKNCAGPCIGLQSQED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    +   +   M     +  +E A   +++   + + ++ ++ + 
Sbjct: 198 YLKNIDEIKEILKGNTQEISRMLLERMQTLAGEMKFEEAQKVKEKYLLIENYRSKSEVVS 257

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
             +    ++  +    N A I       G      TF  K     +  ++L+  + +   
Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L  I F           VP++G+K+K+++ +++N  +    +
Sbjct: 318 RYKSQSREIIVPFELDLELNNIVFT----------VPQRGDKKKLLDLSILNVKQYKADR 367

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 368 LKQAEKLNPEQRSMRLMKEIQQELHLDRPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I 
Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------TPLPDLIIT 471

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK   R    E  F    + + +  + P+   
Sbjct: 472 DGGKGQMEVVREVIED-ELNLTIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 529

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAI+ HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDNIKGIGEKTKTALLKEFKSVKRIKEASFEE 589

Query: 589 LASIEGISKKIACKIYNHFHKNT 611
           ++++  I +  A  +        
Sbjct: 590 ISAV--IGEAKAKTVKEGLDNEQ 610


>gi|313901223|ref|ZP_07834711.1| excinuclease ABC, C subunit [Clostridium sp. HGF2]
 gi|312954181|gb|EFR35861.1| excinuclease ABC, C subunit [Clostridium sp. HGF2]
          Length = 592

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 181/622 (29%), Positives = 290/622 (46%), Gaps = 49/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y M +  G ++YVGKA  L++R++ Y     H  + T ++S I++  + 
Sbjct: 10  KLKILPAMPGCYLMKNKDGDIIYVGKAKKLKQRVRQYFVGA-HDFKTTRLVSNIDDFEYI 68

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +E EALLLE N+IK+  P +NI+  DDKS+PY+ +T K   P L   R++   +  Y
Sbjct: 69  VTSSEKEALLLEINLIKKHTPPYNIMFMDDKSYPYLKLT-KENAPVLKVVRNTKDRKAHY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF    A  +T   L R + LR C     R   + CL + + +C  PC  +I    Y 
Sbjct: 128 FGPFPDSGAAWETAKLLNRIYPLRKCR----RMPKKECLYYHMGQCLAPCIRDIDERVYA 183

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   +KF+ G    + + + R M QA+ +  +E A      + A+ H+       +  
Sbjct: 184 DMVSGIQKFMRGDVREMLDTLHREMEQASEELLFEKAQEKLSLIHAIEHVTAKQQIDFKD 243

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K    IQ  F   G+                 A     F+ Q+Y + P
Sbjct: 244 RKDRDVFGYYVDKGYISIQGFFLRGGKLLERTLSI--EPLYENEADAFVSFILQYYANNP 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL-- 356
            P+ IL+ +E + T L EI   K       I  P +G+K K+++  L NA  +H QK   
Sbjct: 302 LPQEILIPKEYDITHLEEILDTK-------ILQPLRGDKLKLVDMVLANAKNAHEQKFEL 354

Query: 357 --STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               E      ++       L     RIE++DNSHI G   V  MVV  +    K  YR 
Sbjct: 355 VERKESRRYEGMEQLCNL--LQKEIHRIELFDNSHISGTHNVSGMVVYRDGEPSKKDYRT 412

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F L     +   D   M+ V+ RR+ +L+K                  +PD++I+DGG  
Sbjct: 413 FRL----GEYISDLDSMKEVIYRRYFRLLKEG--------------ARFPDLLIVDGGYL 454

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+ AA+ +++ L++   +TI  + K               G  L +     + + + +++
Sbjct: 455 QIEAAREIIEALDI--PLTICGLVKDDNHRTSN--LMDVNGNILPVKRDSSLFFLLTQMQ 510

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAI+ HRK R K    S LDE+ GIG +RK+ + + F ++K +  ++ E +  + 
Sbjct: 511 DEVHRFAISYHRKLRGKAMTKSILDEVEGIGEVRKKEIWKHFKSLKRLKEATIEEIRQV- 569

Query: 594 GISKKIACKIYNHFHKNTSHTP 615
            + +K+A  IYN  H     + 
Sbjct: 570 -VPEKVAQNIYNILHNTDQKSE 590


>gi|312134297|ref|YP_004001635.1| excinuclease ABC subunit C [Caldicellulosiruptor owensensis OL]
 gi|311774348|gb|ADQ03835.1| excinuclease ABC, C subunit [Caldicellulosiruptor owensensis OL]
          Length = 593

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 192/612 (31%), Positives = 300/612 (49%), Gaps = 36/612 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
               +P  PGVY M D  G V+YVGKA NL+ R++ Y  +++    +   M+ +I ++ +
Sbjct: 6   KLSNLPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSSDMPPKTRLMVKKIKDLDY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  E+EAL+LE N+IK  +P++N+LLRDDK++ YI IT+    P L   R        
Sbjct: 66  IVTDNEIEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSR 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  +V++T+  L+  F LR+C         + RPCL F I++C G C G++S E
Sbjct: 125 YFGPYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEE 184

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + V +A K LSG    + E++   M +      +E A   +++L++L  I      I
Sbjct: 185 EYQKLVSKAVKVLSGKGDEVVEELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVI 244

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           Y      D  +   +     I       G+      F LK D +         FL Q+Y+
Sbjct: 245 YADDRSEDVINFAKDHTHIAIVVLIIRNGKLINKEEFVLKADED-----TFERFLEQYYS 299

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           D    P+ I++    E    +E    K YG+KVK+ VPKQGEK+++++ A  NA  S   
Sbjct: 300 DVVSLPKEIIVPNTVENAENIEKMIEKLYGFKVKVIVPKQGEKKQLLDMAKKNAEISLAN 359

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           +   +  +   L        L +  ++IE YD S+I G   VG +VV  +  F K  YRK
Sbjct: 360 RQKVDDVYAEALLTLKNILGLENEIEKIESYDISNIAGADNVGTLVVFEDGRFNKEYYRK 419

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +     + QDD   ++ VL RRF+ L K                   PD++++DGG+ 
Sbjct: 420 FKIKG--FEGQDDIRSIKEVLTRRFTNLEK---------------HGRIPDLILIDGGQN 462

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++A   VL  L     I +  + K  +         +  G+ L +     +   I  ++
Sbjct: 463 QVNAVLEVLNALGFS--IPVAGMVKDDRHKTKD---LIYNGKELAIQEYPLVFKLIYAIQ 517

Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +E HRFA+  HR+ RKK    S LDEI GIG  RK  L + FG++  + ++S E +    
Sbjct: 518 EETHRFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRVFGSIDNLRKASIEEIVKAA 577

Query: 594 GISKKIACKIYN 605
            I  ++A KI  
Sbjct: 578 EIPYEVALKIKE 589


>gi|226356064|ref|YP_002785804.1| excinuclease ABC subunit C [Deinococcus deserti VCD115]
 gi|226318054|gb|ACO46050.1| putative UvrABC system protein C (Excinuclease ABC, subunit C)
           [Deinococcus deserti VCD115]
          Length = 617

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 167/629 (26%), Positives = 294/629 (46%), Gaps = 42/629 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY      G  +Y+GKA NL+ R+  +  +   + + T +    + + F     
Sbjct: 9   LPTTPGVYIFR-KGGTPIYIGKANNLRSRVGQHFKAGGKSGKFTAL---ADTLEFITARN 64

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEAL+LEAN+IK+ +P +N+ L+DDK +P++ +T+    P L   R      GSY+GP+
Sbjct: 65  EVEALVLEANLIKQHRPHYNVTLKDDKHYPFLKLTN-ETYPMLVVTRRVLKDGGSYYGPY 123

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               AV +  + +   F LR  +    + + RPCL + + RC GPC      + Y   V 
Sbjct: 124 PDSSAVRRVKHLIDTMFPLRKNSGLPLQKKARPCLNYHMGRCLGPCIDAAPVDDYRRVVE 183

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHNDSIYNR 241
           + K  L G    +  ++  +M  A L  D+E A   RDR+ A+       Q+   S    
Sbjct: 184 DVKSLLEGRAAPVIARLKEDMKAAALARDFEQAGRLRDRVQAVEKLFGTEQHAFVSDETD 243

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300
           +D          A +Q      G+  G    FL    +S   +I+  F++ +YT     P
Sbjct: 244 LDFLGAAQAGEYAMVQLFRMRGGRVVGRDKRFLTGTEDSPLGEIVEAFVQDYYTQATHVP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLST 358
             ILL  + ++T +      ++ G ++++  PK+G+K  ++E A  NA+        L  
Sbjct: 304 PLILLPADFDDTPIWSAFLSEKAGRRIEMRTPKRGDKVDLVEMAQRNANTGLESELALLE 363

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  L    +  ALP  P RIE YDNS++ G + V  MVV       + ++R+F + 
Sbjct: 364 RRGDHPGLDALREALALPDRPWRIEGYDNSNLFGTNIVSGMVVFEGGRARRGEHRRFKVR 423

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   DD   M+  + RRF+  + ++                 PD++++DGG+GQ++A
Sbjct: 424 G--LDHPDDYTSMKQTISRRFTGSLADK--------------LPLPDLILIDGGRGQVNA 467

Query: 479 AQGVLKKLNVENRITIISIAKGPKR-----SAGMEKFFVKK-----GEALVLNMRDPILY 528
           A   L++  +  ++ ++ +AK  +R       G + +            L+L    P L 
Sbjct: 468 ALDALREAGI--QVPVVGLAKREERLILPGRYGAQWWLENGTEIGVDRELLLPQTHPALR 525

Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +  +RDE H +A+T HRK R +    S  D++ GIG  R+  LL+ F +++ ++ +  E
Sbjct: 526 MLIGVRDEVHNYAVTYHRKLRGQDMLRSVFDDLPGIGQKRRDALLEHFTSLEDLAAAPVE 585

Query: 588 TLASIEGISKKIACKIYNHF-HKNTSHTP 615
            +A++ G++ + A  +      +  +  P
Sbjct: 586 QIAAVPGMTTRAAQSVKTFLAQRAANQAP 614


>gi|241668632|ref|ZP_04756210.1| excinuclease ABC subunit C [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877165|ref|ZP_05249875.1| UvrABC system protein C [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843186|gb|EET21600.1| UvrABC system protein C [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 612

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 184/615 (29%), Positives = 315/615 (51%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ R+ SY        +   M+ Q+  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQVARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N +Q+ F +R C +S ++ R RPCL +QIK C  PC G +S E+Y E 
Sbjct: 136 PYVSISSVKNTLNIIQKIFPIRQCENSYYKSRVRPCLQYQIKCCLAPCVGLVSQEQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G   ++ E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVILRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   V    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIVAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +   L    KRIE +D SH  G + +   VV  + G  +  +R++
Sbjct: 375 TSSKSQYQKRLEALKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDEGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K  DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKAGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREFGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +  ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEITKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|169350170|ref|ZP_02867108.1| hypothetical protein CLOSPI_00914 [Clostridium spiroforme DSM 1552]
 gi|169292953|gb|EDS75086.1| hypothetical protein CLOSPI_00914 [Clostridium spiroforme DSM 1552]
          Length = 588

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 183/614 (29%), Positives = 297/614 (48%), Gaps = 46/614 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D  G V+YVGKA  L+ R+ SY     H ++ T ++ +I +  + VT +
Sbjct: 13  LPLLPGCYLMKDKNGDVIYVGKAKKLKNRVSSYFVGA-HNYKTTKLVHEIVDFDYIVTDS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE N+IK   P++NI   D+K +PYI +T K + P L   R++   +  +FGPF
Sbjct: 72  EKEALLLEINLIKDYSPKYNISFMDNKYYPYIQLT-KERHPRLKIVRNAQDKKHRHFGPF 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A  +T   L R + LR C         +PCL + + +C  PC   ++ E Y +   
Sbjct: 131 PDGTAARETFKLLNRLYPLRKCNHIP----KKPCLYYSLNQCLAPCIQTVNEETYKQITS 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              KF+ G    +  ++   M  A+  ++YE A   RD ++ + H+ +     +N     
Sbjct: 187 NITKFIQGDTKQIINELQEKMYNASEVQNYELAKECRDLISHIQHVTSKQHVQFNDLVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D    YH+K   C+Q  F   G+        +    +    + +  FL  FY +   P+ 
Sbjct: 247 DIVGYYHDKGYLCLQLFFMRNGKLLARDLNLVPM--QDDFQEQIISFLVLFYQENTEPKE 304

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358
           +L+ +E + + L EI   K          P++G K  ++  A  NA              
Sbjct: 305 LLVPKELDVSLLQEIIKCKIIK-------PQKGNKANLVAMANENAKEQLEKKFLLIQKN 357

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E S    +K       +     RIE++DNS+I G  AV  MV   +    K  YRKF + 
Sbjct: 358 EASTIGAIKQLGSLLNIDLPR-RIELFDNSNIQGSYAVAGMVCFKDGLPSKKDYRKFKIK 416

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A M+ V+ RR+ +++                    PD++I+DGGKGQ+  
Sbjct: 417 T--VEGPDDYASMKEVIYRRYYRVLMEN--------------LERPDLIIVDGGKGQIKV 460

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ V+  LN+   I +  +AK  K S  M      +G  + ++ +  + + + R++DE H
Sbjct: 461 AKEVIDSLNL--NIMVCGLAKDDKHSTSM--LLDSEGNEVAIDKKSELFFLLVRMQDEVH 516

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           R+AI+ H+  R K+ + S LD + GIGP RK+LLL+ FG+VK +  +S E L  +  + K
Sbjct: 517 RYAISFHKNVRSKSLFQSILDNVEGIGPKRKKLLLKEFGSVKQLKEASLEQLEKV--LPK 574

Query: 598 KIACKIYNHFHKNT 611
           ++A  ++N   K+T
Sbjct: 575 EVAANLFNVLKKDT 588


>gi|89256741|ref|YP_514103.1| excinuclease ABC subunit C [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009820|ref|ZP_02274751.1| DNA excision repair enzyme, subunit C (UvrABC system protein A)
           [Francisella tularensis subsp. holarctica FSC200]
 gi|254368040|ref|ZP_04984060.1| DNA excision repair enzyme, subunit C (uvrABC system protein C)
           [Francisella tularensis subsp. holarctica 257]
 gi|119367651|sp|Q2A2E9|UVRC_FRATH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|89144572|emb|CAJ79887.1| DNA excision repair enzyme, subunit C (UvrABC system protein A)
           [Francisella tularensis subsp. holarctica LVS]
 gi|134253850|gb|EBA52944.1| DNA excision repair enzyme, subunit C (uvrABC system protein C)
           [Francisella tularensis subsp. holarctica 257]
          Length = 612

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 186/615 (30%), Positives = 320/615 (52%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ RI SY        +   M+ QI  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRINSYFSKGAKDSKTLMMVEQIARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC  PC G +S ++Y E 
Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G   ++ E+I+ NM QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSSVLEEISANMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +        KRIE +D SH  G + +   VV  ++G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLESEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K+ DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|260583729|ref|ZP_05851477.1| excinuclease ABC subunit C [Granulicatella elegans ATCC 700633]
 gi|260158355|gb|EEW93423.1| excinuclease ABC subunit C [Granulicatella elegans ATCC 700633]
          Length = 590

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 169/611 (27%), Positives = 301/611 (49%), Gaps = 41/611 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +Q+P+ PG Y M +    ++Y+GKA NL+ R++SY    ++T +   ++S+I++  F 
Sbjct: 9   KLKQLPDLPGCYLMKNQEDDIIYIGKAKNLKNRVRSYFRGAHNT-KTEKLVSEIHHFEFI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT T  E+LLLE N+IK+ +P +NI L+    +PY+ IT+  K P L    +     G Y
Sbjct: 68  VTKTNKESLLLEINLIKKYQPYYNIKLKQGTMYPYLKITN-EKDPQLIITSNVEKDGGMY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A  +T   +Q+ + LR C     ++ TR C  + + +C G C  E+S E Y 
Sbjct: 127 FGPYPNVYAATETQQLIQKIYPLRKCG----KNETRACFYYHLGQCIGCCDHEVSPEIYQ 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   + ++FL G    +K+ + + M++A+ + ++E AI +R+++  +         +   
Sbjct: 183 QQKKKIQRFLEGDVKEIKQDLQKKMDEASEQLEFERAIDYRNQIQYIETTVEKQHIMSQD 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           +   D FS Y ++    IQ                    + +    I          +  
Sbjct: 243 FTNRDVFSFYMDRGWISIQVFLLRQSTIIKREAALFPIYNSAEEELISFIVQFYQEQNHI 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ IL+  E ++  L E+   K          P++G K+++++ A  N+          
Sbjct: 303 LPKEILVPAEIDKELLAEVLEVKVLT-------PQRGPKKRMLDLATQNSEVALLEKFKI 355

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
             +++      ++   +   L  +   IE +D+S+I G + V  MVV  +    K  YRK
Sbjct: 356 DENSQQKTLGAVEQLRQALDLSRLS-VIESFDHSNIQGTNPVSAMVVYRDGKPEKKSYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           FN+    V+   +    + V+ RR+S+L+K ++ L              PD++++DGGK 
Sbjct: 415 FNIKT--VQGSHEFLTTQEVVRRRYSRLLKEQKPL--------------PDLILMDGGKV 458

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+ AA  VL+   +   I I  + K  K        + ++ E + L+      + +QR++
Sbjct: 459 QMRAAMEVLED-ELGLSIPIAGMVKDEKHKTAH-LLYGEEYEQIELDPTSQAFHLLQRIQ 516

Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +E HR+AIT HR+ R K A+ S LDEI G+GP  +  LLQ F T+K I  ++ E +  + 
Sbjct: 517 EEVHRYAITFHRQVRSKNAFSSILDEIEGVGPKTRTKLLQHFKTMKGIQEATVEEIQKL- 575

Query: 594 GISKKIACKIY 604
           GIS+K+A +I 
Sbjct: 576 GISEKVARRIK 586


>gi|218961104|ref|YP_001740879.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729761|emb|CAO80673.1| Excinuclease ABC, C subunit [Candidatus Cloacamonas
           acidaminovorans]
          Length = 601

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/613 (30%), Positives = 309/613 (50%), Gaps = 38/613 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PGVY   D  G ++Y+GKA NL+ RIK+Y++      +  H+I  I ++ + +T +
Sbjct: 15  LPEQPGVYLWKDKDGTIIYIGKALNLKHRIKNYLNPAGKDLKTEHLIKNIADLDYIITNS 74

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E +A +LEA ++KR +P++NI+L+DDK +P++ IT     P ++  R+       YFGP+
Sbjct: 75  EADAFILEATLVKRYRPKYNIMLKDDKRYPFVKITVNEPFPRIFITRELLKDNAKYFGPY 134

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEKYMEFV 184
             V  +  T+  L+  F LRSC  ++ + + + PC+ FQ+ +C  PC G IS + Y + V
Sbjct: 135 TEVRYLRNTLRDLEWIFPLRSCNRNIPKIKYKQPCMNFQLGKCPAPCIGNISQKNYAKTV 194

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241
           ++  +F +G    L +++   M  A+ +  +E A   RDR+ A+  IQ            
Sbjct: 195 NQLLRFFNGRYTELLDELRTEMQNASAELRFEEAGKFRDRIIAIERIQKRQSVFNVEGGN 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-PCP 300
           +D    Y  +  A         G       + L          IL+ FL+ +Y D+   P
Sbjct: 255 IDIIGFYREEKRAVCVILKMKNGAIIHQENYPLTNLDYEEPDSILASFLQLYYADREEMP 314

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKL 356
           E +LL    ++                K+ +P++GEK K+I  A  NA      S    L
Sbjct: 315 EEVLLPFAPKDMD------KLNSWLGNKLQIPQRGEKTKLIAMAKTNAFNIVEESKLAHL 368

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                    +++  +   LP +P++I   D S I G   V   V        K  YR F 
Sbjct: 369 RKANRTIFPVQELKEALKLPKLPRKIVCMDISTIQGSDTVSSAVFFENGKSKKKYYRHFI 428

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    ++TQ+D A M+  + R  ++  K  +                PD++++DGGKGQL
Sbjct: 429 IRS--IETQNDYAAMQETMARFLTETEKEPQ--------------MKPDLIVIDGGKGQL 472

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           SA++ +L+    +N I+II++AK  +     E F     ++++L      L  +  +RDE
Sbjct: 473 SASEQILRASG-KNDISIIALAKRAE-----EVFVPGNEQSIILPRSSSALRLLINIRDE 526

Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFA++ HRKRR +    S L+ I+GIG   K LLL+  G+V+ I+ ++ ETL+ I+GI
Sbjct: 527 AHRFALSLHRKRRSRRTLESELESISGIGEKNKFLLLKELGSVENIANANRETLSKIKGI 586

Query: 596 SKKIACKIYNHFH 608
             KIA KIYNHFH
Sbjct: 587 GPKIAEKIYNHFH 599


>gi|15604426|ref|NP_220944.1| excinuclease ABC subunit C [Rickettsia prowazekii str. Madrid E]
 gi|8134802|sp|Q9ZCX9|UVRC_RICPR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|3861120|emb|CAA15020.1| EXCINUCLEASE ABC SUBUNIT C (uvrC) [Rickettsia prowazekii]
 gi|292572194|gb|ADE30109.1| Excinuclease ABC subunit C [Rickettsia prowazekii Rp22]
          Length = 626

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 237/621 (38%), Positives = 351/621 (56%), Gaps = 32/621 (5%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           PEC GVY+MLD+  +V+Y+GKA  L+KR+ +Y   ++  ++   MIS    + + +T +E
Sbjct: 19  PECSGVYKMLDVNKQVIYIGKAKILKKRLTNY-IKSDLDNKTLRMISNTYFLEYIITNSE 77

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
           VEALLLEA +IK+ +P+FNILL+DDKSFP+I ++  H  P L K+R  +   G +FGPFA
Sbjct: 78  VEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLSLDHDFPQLIKYRGKALSDGKFFGPFA 137

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S   V  T+  LQ+ F LRSC D+ F  RTRPCL ++IKRC  PC G+I+ E Y E V +
Sbjct: 138 SNTQVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKEDYRELVMQ 197

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IYNRMDC 244
            K FL      L+  +++ M + + +  +E A   RDR+ ALS++Q  +    +    D 
Sbjct: 198 VKDFLQCRTIALQANLSKKMQELSSQMRFEEAAEIRDRIKALSYVQLKSGILDVVRDADI 257

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
            ++ H     CI+   +  GQ  G   +F  +   ST+ ++L YFL QFY  +  P  I+
Sbjct: 258 IAIVHKNLHYCIEVSLYRAGQPYGAIPYFFSSTENSTHEEVLEYFLLQFYQKQQVPSEII 317

Query: 305 LSEEAEETSLLEISFFK-QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           ++ E      +  +  K      + ITVP +G K K++++A +NA  S  Q L   I + 
Sbjct: 318 MNHEINSKENMIEAIKKINNISDLSITVPHKGGKAKLVQKAEVNALLSLEQYLKKSIKNT 377

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV- 422
            I+    K F LP IP+RIEIYDNSH+ G  AVG MVV G+ GF K +YR F+L    + 
Sbjct: 378 DIMFALKKLFDLPEIPERIEIYDNSHLQGMFAVGVMVVAGQIGFDKKEYRVFSLSSRSLT 437

Query: 423 ----------KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
                     +  DD  M+R VL RRF++L                     P ++I+DGG
Sbjct: 438 IGSEIELRDDRKGDDYGMLRQVLTRRFTRLKNE--------------PHKLPSLMIIDGG 483

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KG L+  + V+ K  +   I  + ++KG  R+AG+E+  ++  E L L+   PI+ ++Q 
Sbjct: 484 KGHLTIVKEVMDKFEI--NIPFVCMSKGRDRNAGLEQLHMQGKEVLTLDKNLPIMKYLQI 541

Query: 533 LRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAH FAI  HR  R +A   S LDEI+GIG  RK  LL  FG+ K +  ++ + L  
Sbjct: 542 LRDEAHNFAIKNHRLGRSRAIKISSLDEIDGIGETRKTALLHYFGSYKAVCNATIDELTK 601

Query: 592 IEGISKKIACKIYNHFHKNTS 612
           ++GISK +A  I+N  ++  S
Sbjct: 602 VKGISKSLASMIFNILNRKIS 622


>gi|298484264|ref|ZP_07002428.1| excinuclease ABC subunit C [Bacteroides sp. D22]
 gi|298269589|gb|EFI11186.1| excinuclease ABC subunit C [Bacteroides sp. D22]
          Length = 620

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 170/624 (27%), Positives = 301/624 (48%), Gaps = 47/624 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 21  NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 81  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFKTRKVIRNGSSYYGP 139

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E+
Sbjct: 140 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 199

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G   ++   +   M     +  +E A   +++   +   ++ ++ + 
Sbjct: 200 YLKNIDEIKEILKGNTQDISRMLLEKMQTLAAEMKFEEAQKVKEKYLLIESYRSKSEVVS 259

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
             +    ++  +    N A I       G      TF  K     +  ++L+  + +   
Sbjct: 260 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 319

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L            V  TVP++G+K+K+++ +++N  +    +
Sbjct: 320 RYKSQSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSVLNVKQYKADR 369

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 370 LKQAEKLNPEQRSMRLMKEIQQELHLERPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 429

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I 
Sbjct: 430 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 473

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK   R    E  F    + + +  + P+   
Sbjct: 474 DGGKGQMEVVREVIED-ELNLAIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 531

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAI+ HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 532 LTQIQDEVHRFAISFHRDKRSKRQVASALDTIKGIGEKTKTALLKEFKSVKRIKEASFEE 591

Query: 589 LASIEGISKKIACKIYNHFHKNTS 612
           + +I  I +  A  +       +S
Sbjct: 592 IVAI--IGEAKAKTVKEGLSNESS 613


>gi|15672822|ref|NP_266996.1| excinuclease ABC subunit C [Lactococcus lactis subsp. lactis
           Il1403]
 gi|13878835|sp|Q9CH98|UVRC_LACLA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|12723766|gb|AAK04938.1|AE006318_1 excinuclease ABC subunit C [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 668

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 174/664 (26%), Positives = 294/664 (44%), Gaps = 85/664 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G V+YVGKA NL+ R++SY H +++T +   ++S+I ++ + 
Sbjct: 8   KLELLPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  + +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+  K P L   R       +Y
Sbjct: 67  VVGSNIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C      H  + C  F I +C  P    +  + + 
Sbjct: 126 FGPYPDVKAANEVKRLLDRIFPFRKCGL----HEKKVCFYFHIHQCLCPVVNHVDPQVFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E K+FL+G +  +  ++   M  ++   ++E A  +RD + A+  ++     +   
Sbjct: 182 DMTQEVKEFLTGSDKKIVNELEAKMMVSSDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +          +  
Sbjct: 242 LKDRDVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHM 301

Query: 299 CPENILLSEEAE------------------------------------------------ 310
            P  I + ++ +                                                
Sbjct: 302 MPREIFIPQDIDKESVEAVVAASQEGNLLTKAQAKEVDAKVFTAKTLKFSDQKDVEQSIV 361

Query: 311 --ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQM 364
             +  L           K +I  P +GEK++++  A  NA               +    
Sbjct: 362 KLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDILKTTK 421

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            +++  K   +P    RIE +DNS+IMG S V  MVV  +    K  YRK+ +    V  
Sbjct: 422 AVENLGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVG 478

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A MR V+ RR+S+ +K E  L              PD++ +DGG GQ++  + VLK
Sbjct: 479 ADDYASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNITKQVLK 524

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L +   I +  + K  K     E  F    + + L+ +    + + R++DE HRFAIT 
Sbjct: 525 ELGLS--IPVAGMQKNDKHQTS-ELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRFAITF 581

Query: 545 HRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR+ R K  +S  LD I G+GP RK+ LL +F  +K I  +S + +A  + I  ++A ++
Sbjct: 582 HRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEAD-IPYEVAERV 640

Query: 604 YNHF 607
               
Sbjct: 641 KTTL 644


>gi|227485077|ref|ZP_03915393.1| excision endonuclease subunit UvrC [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236910|gb|EEI86925.1| excision endonuclease subunit UvrC [Anaerococcus lactolyticus ATCC
           51172]
          Length = 620

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 188/610 (30%), Positives = 304/610 (49%), Gaps = 26/610 (4%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTCTEVEA 69
           GVY M +  G ++YVGKA +L+ R++ Y  ++ N   ++  M+S I +  + +   EVEA
Sbjct: 22  GVYIMRNADGEIIYVGKAISLKNRVRQYFDNNKNKGAKVLAMVSHIADFEYIIVQNEVEA 81

Query: 70  LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVD 129
           L+LE+N+IK+ +P++NI+LRDDK +PYI I +K K P + K R  +     YFGP+    
Sbjct: 82  LVLESNLIKKNRPKYNIVLRDDKQYPYIKI-NKEKFPRIQKVRQVNKDGADYFGPYPDAY 140

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
           AV   I+     +  R+C  +  R +   RPCL + IK+C GPC GE     Y+  + + 
Sbjct: 141 AVNDAIDLFHDYYPFRTCNLNFDRGQSLDRPCLNYFIKKCKGPCIGEEDESTYLSKMDDV 200

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDC 244
           ++FL   +  + +K+   MN+ + K ++E A  +RD   ALS +    +      + +D 
Sbjct: 201 RQFLDKKDRKISDKVLERMNEESAKLNFEMAAKYRDYYRALSILSERQNVTETTGDDVDI 260

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPENI 303
            ++    ++  +Q  F   G       + +K +     A I+S F++QFY D    P+ I
Sbjct: 261 IAISKGVSIIVVQVFFMRKGHIVDREHYIIKNEFAEEEADIISSFIKQFYLDLIFIPKEI 320

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLSTE 359
           L+     +   +     ++ G KVKI  PK G+K ++I  A  NA         +    E
Sbjct: 321 LVQTLPSDLESITDFLNQKKGSKVKIHQPKLGKKFELITMAARNAEDMRIKHEKRIDRKE 380

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +    L    +   +     RIE YD S+  G  +VG MVV         +YRKF +  
Sbjct: 381 RNKSSGLNQLKEILNVD-KINRIEAYDISNTSGVQSVGSMVVFENGISAPKEYRKFKIKT 439

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V+  DD A +R VL RRF+   K               F   PD++++DGG+GQ+S A
Sbjct: 440 --VEGPDDYASLREVLIRRFTNAKKE-----IAKGSTHTGFGKLPDLILMDGGRGQVSIA 492

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + V K++N++  I +  + K  K +       +   E + +  +DP+   I  +++EAHR
Sbjct: 493 KEVFKEMNID--IEVAGLVKDDKHTTRG---IIYNNEEIQIRRKDPVYKLIYEIQEEAHR 547

Query: 540 FAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI  HR   RK    S LD+I G+G   K  L + F T+  I ++S E L  +  + K+
Sbjct: 548 FAINYHRSLMRKSMKKSELDDIKGVGKKTKANLYKHFKTISNIKKASIEELMEVPLVGKE 607

Query: 599 IACKIYNHFH 608
            A +IY  F 
Sbjct: 608 AAVEIYKFFR 617


>gi|301063360|ref|ZP_07203899.1| excinuclease ABC, C subunit [delta proteobacterium NaphS2]
 gi|300442523|gb|EFK06749.1| excinuclease ABC, C subunit [delta proteobacterium NaphS2]
          Length = 630

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 195/616 (31%), Positives = 304/616 (49%), Gaps = 36/616 (5%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTV 62
           + +P  PGVY  L    RV+YVGKA +L KR+ SY  S NH+  +   M+     + F +
Sbjct: 17  KVLPHSPGVYLFLGPQNRVIYVGKAKDLSKRVLSYFRSANHSETKTARMLKMAKGLEFIL 76

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EA +LE +++K+ KPR+NI+LRDDK +P + +  +   P L   R        YF
Sbjct: 77  TLTEKEAFILENDLVKKFKPRYNIILRDDKQYPCLRLDIREPYPHLGIVRKIKKDGALYF 136

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF+S +AV  T   + R F LR C +     R RPC+ FQ+ RC  PC+  +S+E Y E
Sbjct: 137 GPFSSANAVRSTTRIISRVFKLRKCKNRKLLQRARPCINFQMDRCLAPCSRPVSTETYRE 196

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IY 239
            V + + FL G N  L   + + M++A    D+E A   RDR++A+              
Sbjct: 197 MVEQVRLFLEGRNTELVAALKKEMSEAATHLDFERAADIRDRISAIEKTVERQHVVSRRM 256

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-P 298
              D   +    +L  +   F   G   GT  F  + DS +  ++++  FL+Q+Y+ +  
Sbjct: 257 MDQDIIGIAEKGDLRQLAVMFVRQGHLLGTRHFLFE-DSNAALSEVMEAFLKQYYSGQVF 315

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  ILLSE  EE+  L     +    KV I  P++GEK+K+++ A+ NA          
Sbjct: 316 IPGTILLSEPVEESESLGEWISEMAEKKVTIHSPRRGEKKKLVQIAVANAGNLLAGHQV- 374

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
               + +L+       L  IP+ IE  D S++ G +AVG +V   +      +    N  
Sbjct: 375 -ARKEALLESTRSLLHLKKIPRTIEGLDISNLQGANAVGVVVAFKDGVPD--KRSYLNYR 431

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD  MM  V+ RR                    + P  PD+ ++DGGKG L+A
Sbjct: 432 IKHVDGIDDYGMMSEVVARRL-------------------AGPPLPDLFLVDGGKGHLAA 472

Query: 479 AQGVLK-KLNVENRIT---IISIAKGPK--RSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
            + VL  K+ +++ IT   ++S+AK          + +   +   + L    P+L+ + R
Sbjct: 473 VKKVLDQKIEIDSGITVPDVVSLAKPDAFLGEVNDKVYVPGRKNPVRLAADHPVLFLMMR 532

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDEAHR A+T H+K R +    S LD I G+G  RK+ LL+ F  +  I+++  E L +
Sbjct: 533 VRDEAHRRAVTYHQKLRSRNLTRSILDGIPGVGEKRKQALLRQFKGIDRIAKAELEELCA 592

Query: 592 IEGISKKIACKIYNHF 607
           + GI++ +A KI    
Sbjct: 593 VPGINRNLALKIMEGL 608


>gi|56707888|ref|YP_169784.1| excinuclease ABC subunit C [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670359|ref|YP_666916.1| excinuclease ABC subunit C [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456968|ref|ZP_03665441.1| excinuclease ABC subunit C [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370382|ref|ZP_04986387.1| DNA excision repair enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874701|ref|ZP_05247411.1| uvrABC system protein C [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81597646|sp|Q5NGQ8|UVRC_FRATT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119367650|sp|Q14I60|UVRC_FRAT1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|56604380|emb|CAG45410.1| DNA excision repair enzyme, subunit C (UvrABC system protein A)
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320692|emb|CAL08793.1| DNA excision repair enzyme, subunit C (UvrABC system protein A)
           [Francisella tularensis subsp. tularensis FSC198]
 gi|151568625|gb|EDN34279.1| DNA excision repair enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840700|gb|EET19136.1| uvrABC system protein C [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159072|gb|ADA78463.1| DNA excision repair enzyme, subunit C (UvrABC system protein A)
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 612

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 184/615 (29%), Positives = 319/615 (51%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ R+ SY        +   M+ QI  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRSKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIK C  PC G +S ++Y E 
Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKCCLAPCVGLVSQQQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G   ++ E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +   L    KRIE +D SH  G + +   VV  ++G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K+ DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGIERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|326406386|gb|ADZ63457.1| excinuclease ABC subunit C [Lactococcus lactis subsp. lactis CV56]
          Length = 668

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 175/664 (26%), Positives = 295/664 (44%), Gaps = 85/664 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G V+YVGKA NL+ R++SY H +++T +   ++S+I ++ + 
Sbjct: 8   KLELLPDSPGCYLHKDKNGTVIYVGKAKNLKNRVRSYFHGSHNT-KTELLVSEIEDLEWI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  + +E+L+LE N+I+R KP++NI+L+DDK +P++ IT+  K P L   R       +Y
Sbjct: 67  VVGSNIESLVLEINLIQRYKPKYNIMLKDDKYYPFLKITN-EKYPRLLVVRKVQKDGATY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C      H  + C  F I +C  P    +  + + 
Sbjct: 126 FGPYPDVKAANEVKRLLDRIFPFRKCGL----HEKKVCFYFHIHQCLCPVVNHVDPQVFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E K+FL+G +  +  ++   M  ++   ++E A  +RD + A+  ++     +   
Sbjct: 182 DMTQEVKEFLTGSDKKIVNELEAKMMVSSDNMEFEQAAEYRDVIKAIGTLRTKQRVMNQD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            +++    +          +  
Sbjct: 242 LKDRDVFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDAEEDFLTYIGQFYQDNNHM 301

Query: 299 CPENILLSEEAE------------------------------------------------ 310
            P  I + ++ +                                                
Sbjct: 302 MPREIFIPQDIDKESVEAVVAASQEGNLLTKAQAKEVDAKVFTAKTLKFSDQKDVEQSIV 361

Query: 311 --ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQM 364
             +  L           K +I  P +GEK++++  A  NA               +    
Sbjct: 362 KLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDILKTTK 421

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            +++  K   +P    RIE +DNS+IMG S V  MVV  +    K  YRK+ +    V  
Sbjct: 422 AVENLGKILGIPKPV-RIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKT--VVG 478

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A MR V+ RR+S+ +K E  L              PD++ +DGG GQ++ A+ VLK
Sbjct: 479 ADDYASMREVMTRRYSRALKEETAL--------------PDLIAMDGGAGQVNIAKQVLK 524

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L +   I +  + K  K     E  F    + + L+ +    + + R++DE HRFAIT 
Sbjct: 525 ELGLS--IPVAGMQKNDKHQTS-ELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRFAITF 581

Query: 545 HRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR+ R K  +S  LD I G+GP RK+ LL +F  +K I  +S + +A  + I  ++A ++
Sbjct: 582 HRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEAD-IPYEVAERV 640

Query: 604 YNHF 607
               
Sbjct: 641 KTTL 644


>gi|312792567|ref|YP_004025490.1| excinuclease ABC subunit C [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179707|gb|ADQ39877.1| excinuclease ABC, C subunit [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 593

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/612 (31%), Positives = 302/612 (49%), Gaps = 36/612 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
               +P  PGVY M D  G V+YVGKA NL+ R++ Y  ++     +   M+ +I ++ +
Sbjct: 6   KLSNLPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSQDMPPKTKLMVKKIKDLDY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  EVEAL+LE N+IK  +P++N+LLRDDK++ YI IT+    P L   R        
Sbjct: 66  IVTDNEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSR 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  +V++T+  L+  F LR+C         + RPCL F I++C G C G++S E
Sbjct: 125 YFGPYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEE 184

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + V  A K LSG    + E++   M +      +E A   +++L++L  I      +
Sbjct: 185 EYQKLVDRAVKVLSGKGDEIVEELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVV 244

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           Y      D  +   +     I       G+      F LK + +         FL Q+Y+
Sbjct: 245 YADDRSEDVINFAKDDTHIAIVVLIIRNGKLINKEEFVLKAEED-----TFERFLEQYYS 299

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           D    P+ I++    E    +E    K YG+KVK+T+PKQGEK+++++ A  NA  S   
Sbjct: 300 DVVSLPKEIIIPHRIENADNIEKMIEKLYGFKVKVTIPKQGEKKQLLDMAKKNAEISLAN 359

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           +   +  +   L +      L +  ++IE YD S+I G   VG +VV  +  F K  YRK
Sbjct: 360 RQRVDDVYAEALLNLKNMLGLENEIEKIESYDISNIAGADNVGTLVVFEDGKFNKEFYRK 419

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +     + QDD   ++ VL RRF+ L K                   PD++++DGG+ 
Sbjct: 420 FKIKG--FEGQDDIRSVKEVLTRRFTNLEK---------------HGRIPDLILIDGGQN 462

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++AA  VL  L     I +  + K  +         +  G+ + +     +   I  ++
Sbjct: 463 QVNAALEVLNALGFS--IPVAGMVKDDRHKTRD---LIYNGKEVGIQEYPLVYKLIYAIQ 517

Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +E HRFA+  HR+ RKK    S LDEI GIG  RK  L ++FG++  + ++S E +    
Sbjct: 518 EETHRFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAA 577

Query: 594 GISKKIACKIYN 605
            I  ++A KI  
Sbjct: 578 DIPYEVALKIKE 589


>gi|115315141|ref|YP_763864.1| excinuclease ABC subunit C [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502901|ref|YP_001428966.1| excinuclease ABC subunit C [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|119367652|sp|Q0BL07|UVRC_FRATO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038055|sp|A7NDF7|UVRC_FRATF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|115130040|gb|ABI83227.1| UvrABC excinuclease subunit C [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253504|gb|ABU62010.1| excinuclease ABC subunit C [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 612

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 185/615 (30%), Positives = 319/615 (51%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ RI SY        +   M+ QI  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRINSYFSKGAKDSKTLMMVEQIARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC  PC G +S ++Y E 
Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G   ++ E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +        KRIE +D SH  G + +   VV  ++G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLESEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K+ DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|323339567|ref|ZP_08079841.1| excinuclease ABC subunit C [Lactobacillus ruminis ATCC 25644]
 gi|323092962|gb|EFZ35560.1| excinuclease ABC subunit C [Lactobacillus ruminis ATCC 25644]
          Length = 594

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 178/617 (28%), Positives = 288/617 (46%), Gaps = 42/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M D+  +++YVGKA NL+ R++SY   ++H  +   ++S+I++    
Sbjct: 9   KLKLLPDQPGCYLMKDVNAKIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIHDFETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT T+ EA LLE  +I++ KP +NI L+    +PYI IT+  + P +          G Y
Sbjct: 68  VTSTDKEAFLLEITLIQKHKPYYNIKLKRGTGYPYIKITN-ERDPQIMIVSKVLNDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A ++T+  LQ+ + LR C      ++ RPCL + + +C G C  E+  E Y 
Sbjct: 127 FGPYPNVYAAQETVQLLQKVYPLRRCPG----NQKRPCLYYHMGQCLGACFKEVPVEAYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + + K FL+G    +K ++   MN A  K ++E A   RD++  +         I N 
Sbjct: 183 RNIRKIKSFLNGNVSQIKRELTAKMNDAAAKLEFERAAEIRDQIRYVEMTVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ + +K    IQ  F    +                              ++ 
Sbjct: 243 NTPRDLFNFFMDKGWLSIQVFFIRQARLIKREKRLFPCVDLPEEELASFILQFYNQKNRI 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ IL+    ++  L EI         V +  PK+G+KR ++E A  NA          
Sbjct: 303 LPKEILVPPGIDKKVLNEIL-------GVSVKTPKRGQKRDLLEMAHKNAQLVLEEKFRL 355

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               +      + + T    LP+   R+E +D+SH+ G   V  MV   +    KN YRK
Sbjct: 356 LELDDRKTVGAMNEITDALGLPNG-HRVEAFDHSHLQGTDIVSAMVCFVDGRPEKNLYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + L        D+ A  R V+ RR+S+L+K  ENL              PD++++DG K 
Sbjct: 415 YKLKNT--DHADEAASTREVIYRRYSRLLKEHENL--------------PDLILMDGAKI 458

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+ A   VL+   +   I +  + K             + GE + LN +    Y +QR++
Sbjct: 459 QIDACIDVLQN-QLGLNIPVAGMVKNEHHKTAD--LMTETGEKIGLNPKSEGFYLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAI  HR+   K +  S L+ I G+GP  +  LL++FG++K +S +S E L  + 
Sbjct: 516 DEVHRFAIAFHRQVHSKNSLSSRLERIKGVGPKTRTKLLRNFGSLKRLSEASVEELIGL- 574

Query: 594 GISKKIACKIYNHFHKN 610
           GI +K A  I     K 
Sbjct: 575 GIPQKTAQTIKISLAKE 591


>gi|40062489|gb|AAR37441.1| excinuclease ABC, C subunit [uncultured marine bacterium 105]
          Length = 622

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 187/633 (29%), Positives = 299/633 (47%), Gaps = 48/633 (7%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +PE PGVY   + AG  +YVGKA  L+ R++SY+ ++  + RI  ++  + ++  
Sbjct: 8   VQISTLPEQPGVYLYFNGAGDTIYVGKASVLRDRVRSYLSAHGASPRIDALLDDVESLEI 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +  EAL LE N+IK   P++N+LLRDDK++PY+ +T     P +   R        
Sbjct: 68  IVTDSVAEALALENNLIKHRAPKYNVLLRDDKNYPYLQLTTNEAFPRVLVSRRVQRDGAF 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEK 179
           Y GPF       KT+    R F +RSC + +   R RPCL + IKRC  PC     S E+
Sbjct: 128 YAGPFLPTALARKTMLLTHRLFGIRSCNEVITGRRDRPCLEYDIKRCLAPCVANVCSQER 187

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI- 238
           Y E V   + FL G NH L   +   M QA   E +E A   RD +  +  +++    + 
Sbjct: 188 YAEAVEHTRMFLEGRNHELLNTLTSRMTQAAKNEHFEQAAEWRDAIRTIKALRHRQQKMS 247

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL--SYFLRQF 293
                  D F +        I       G+           +    N +       ++QF
Sbjct: 248 LPTLGDRDAFGMRLGPAGVVIHIFQMRRGRVIDRIELVADVEELRDNREEYIVQVAVQQF 307

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
           Y  +P P  +LL    ++   +E    ++   KV ++VPK+G KR ++E A  NA   + 
Sbjct: 308 YEARPAPPEVLLPTIIDDLEAVEEWLSERAKKKVHLSVPKRGNKRALLELASRNATIGYK 367

Query: 354 QKLSTE-ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            + S E +SH   ++    +  L     RIE +D S I G   VG MVV      +++ Y
Sbjct: 368 ARYSEEVVSHHAAMEILRVELDLATSLHRIECFDISTIQGSDTVGAMVVCENGRMMRSAY 427

Query: 413 RKFNLHP-----------------NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455
           RKF +                   + V   DD + M  ++ RR+ +L++           
Sbjct: 428 RKFKIRGLVKGQQSIHRSSSSGLGSVVGKPDDFSAMHEIVFRRYRRLLEEG--------- 478

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
                  +PD++++DGGKGQLSA+   L++L + N I +  + K  +           + 
Sbjct: 479 -----GPFPDLIVIDGGKGQLSASYAALEELGLSNLIAV-GLVKKKEV-----LVVRDRP 527

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQS 574
           + + L   +  L  +QR+RDEAHR A+T HR+ R  +   S LD I G+G  R+R+LL  
Sbjct: 528 DPITLPSANEALLLLQRIRDEAHRCAVTFHRRTRTARHLRSALDSIPGVGLQRRRILLTR 587

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           FG+V  + R+S E L ++ G   ++A  + ++F
Sbjct: 588 FGSVAGVRRASREELMTVVG--ARVADAVLSYF 618


>gi|254369641|ref|ZP_04985651.1| UvrABC excinuclease subunit C [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122600|gb|EDO66729.1| UvrABC excinuclease subunit C [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 612

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 185/615 (30%), Positives = 319/615 (51%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ RI SY        +   M+ QI  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRINSYFSKGAKDSKTLMMVEQIARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIKRC  PC G +S ++Y E 
Sbjct: 136 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQQQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G   ++ E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +        KRIE +D SH  G + +   VV  ++G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLESEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K+ DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKSVDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|255693285|ref|ZP_05416960.1| excinuclease ABC subunit C [Bacteroides finegoldii DSM 17565]
 gi|260620964|gb|EEX43835.1| excinuclease ABC subunit C [Bacteroides finegoldii DSM 17565]
          Length = 602

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 170/619 (27%), Positives = 300/619 (48%), Gaps = 47/619 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 15  NLPEKPGIYQYLNSEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIVDIRYIVVN 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 75  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRVFKTRKIIRNGSSYYGP 133

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK+C+GPC G  S E 
Sbjct: 134 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKKCAGPCIGLQSQED 193

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    +   +   M     +  +E A   +++   + + ++ ++ + 
Sbjct: 194 YLKNIDEIKEILKGNTQEVSRMLLEKMQTLAGEMKFEEAQKIKEKYLLIENYRSKSEVVS 253

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           + +    ++  +    N A I       G      TF  K     +  ++L+  + +   
Sbjct: 254 SVLHNIDVFSIEEDETNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 313

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L            V  TVP++G+K+K++E +++N  +    +
Sbjct: 314 RYKSQSREVIVPFELDMELN----------NVVFTVPQRGDKKKLLELSILNVKQYKADR 363

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 364 LKQAEKLNPEQRSMRLMKEIQQELHLERPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 423

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I 
Sbjct: 424 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------APLPDLIIT 467

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK   R    E  F    + + +    P+   
Sbjct: 468 DGGKGQIEVVREVIED-ELHLNIPIAGLAK-DNRHRTSELLFGFPPQIIGIKQHSPLFRL 525

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAI+ HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 526 LTQIQDEVHRFAISFHRDKRSKRQVASALDTIKGIGEKTKTALLKEFKSVKRIKEASLED 585

Query: 589 LASIEGISKKIACKIYNHF 607
           +A++ G  +  A  +    
Sbjct: 586 IAAVVG--EAKAKIVKEGL 602


>gi|328675813|gb|AEB28488.1| Excinuclease ABC subunit C [Francisella cf. novicida 3523]
          Length = 612

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 186/615 (30%), Positives = 316/615 (51%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ R+ SY        +   M+ QI  I  T+T 
Sbjct: 17  NLTTHSGVYRMLDKHGDIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N +Q+ F +R C +S ++ R RPCL +QIKRC  PC G  S E+Y E 
Sbjct: 136 PYVSISSVKNTLNIIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLASQEQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH---IQNHNDSIYN 240
           +   KKFL+G    + E+I+  M QA+   +YE A ++RD+L  L      Q  +  +  
Sbjct: 196 LVILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVILRKLQQQQIVDIQVDK 255

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDDYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +   L    KRIE +D SH  G + +   VV  + G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDVGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K  DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKAGDDYAAIHQAVSRRISSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 598 GISKKLAQEIWECFH 612


>gi|51473753|ref|YP_067510.1| excinuclease ABC subunit C [Rickettsia typhi str. Wilmington]
 gi|81390029|sp|Q68WG4|UVRC_RICTY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|51460065|gb|AAU04028.1| excinuclease ABC subunit C [Rickettsia typhi str. Wilmington]
          Length = 626

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 231/629 (36%), Positives = 350/629 (55%), Gaps = 34/629 (5%)

Query: 1   MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+ +  PEC GVY+MLD++ +V+YVGKA  L+KR+ +Y   ++  ++   MI+    +
Sbjct: 11  IKSKIIDAPECSGVYKMLDVSKQVIYVGKAKILKKRLTNY-IKSDLDNKTLRMIANTYFL 69

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            + +T +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I ++  H  P L K+R  +   
Sbjct: 70  EYIITHSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLSLDHDFPQLLKYRGKALSD 129

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G  FGPFAS   V  T+  LQ+ F LRSC D+ F  RTRPCL ++IKRC  PC G+I+ E
Sbjct: 130 GKLFGPFASNTQVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA--ALSHIQNHND 236
            Y   V + K FL      L+E +++ M + + +  +E A   RDR+   +   +++   
Sbjct: 190 NYRVLVIQVKDFLQCRTRELQENLSKKMQELSSQMRFEEAAEIRDRIKALSYVQLKSRIL 249

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            +    D  S+ H     CI+   +  GQ  G   +F  +   ST+ ++L YFL QFY  
Sbjct: 250 DVVKNADIISIVHKDLHYCIEVALYRAGQPYGNIPYFFSSTENSTHEEVLEYFLLQFYQK 309

Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I+++ E      ++E          + I VP +G+K K++ +A +NA  S  Q 
Sbjct: 310 QQVPSEIIMNHEINSKENVIEAIKKINNISDLSIIVPHKGDKAKLVHKAEVNALFSLEQY 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L     +  I+ +  K F LP IP+RIEIYDNSHI G  AVG MVV G+ GF K +YR F
Sbjct: 370 LKKITKNTEIMFEVKKLFDLPEIPERIEIYDNSHIQGMFAVGVMVVAGKIGFDKKEYRVF 429

Query: 416 NLHPNDVK-----------TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
           +L   +               DD  M+R VL RRF++L      L              P
Sbjct: 430 SLSSRNFTIGSEIELRDDIKGDDYGMLRQVLTRRFTRLKNEPNKL--------------P 475

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
            ++I+DGGKG L+  + V+ K  +   I  + ++KG  R+AG+E+  ++  E   L+   
Sbjct: 476 SLMIIDGGKGHLTVVKEVMDKFGM--NIPFVCMSKGRDRNAGLEQLHMQGKEVFTLDKNL 533

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISR 583
            ++ ++Q LRDEAH FAI  HR  R +A   S LD+I+G+G  RK  LL  FG+ K +  
Sbjct: 534 LVMKYLQILRDEAHNFAIKNHRLGRSRAIKISSLDDIDGVGEARKTALLHYFGSYKAVCN 593

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTS 612
           ++ + LA ++GISK +A  I+N  ++  S
Sbjct: 594 ATIDELAKVKGISKSLASMIFNVLNRKIS 622


>gi|293401508|ref|ZP_06645651.1| excinuclease ABC subunit C [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305146|gb|EFE46392.1| excinuclease ABC subunit C [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 593

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 178/609 (29%), Positives = 290/609 (47%), Gaps = 44/609 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M +I G ++YVGKA  L+ R++ Y     H  + T +++ I++  + VT +
Sbjct: 14  LPALPGCYLMKNIDGDIIYVGKAKKLKNRVRQYFVGA-HDFKTTRLVANIDDFEYIVTGS 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE N+IK+  P +NI+  DDK++PYI +T K K P L   R++   +  YFGPF
Sbjct: 73  EKEALLLEINLIKKHTPPYNIMFMDDKTYPYIKLT-KEKAPILRVVRNTKDRKAEYFGPF 131

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A  +T+  L + + LR C         + CL + + +C  PC   I  + Y +  +
Sbjct: 132 PDSGAAWETMKLLNQLYPLRKCRHLP----KKACLYYHMGQCLAPCEQAIDEKVYADMAN 187

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
             +KFL G    +  ++  +M QA+ +  +E A    + + A+ H+       +      
Sbjct: 188 GIRKFLKGDVKEILTQLKADMQQASEELAFEKAQEKLNLIHAIEHVTAKQQIDFKDHKDR 247

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  Y +K    IQ  F   G+                       F+ Q+Y   P P+ 
Sbjct: 248 DVFGYYVDKGYISIQGFFVRGGKLLERELSI--QPLYEQPQDAFISFILQYYAKNPLPQE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST-EIS 361
           ILL +E E   L EI        + KI  P +G+K K++E  L NA  +H QK    E  
Sbjct: 306 ILLPKEYEIEHLQEI------LSEAKILQPLRGDKLKLVEMVLANAKNAHQQKFDLVERK 359

Query: 362 HQMILKDFTKKFA-LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
                +   +    L     RIE++DNSHI G   V  MVV  +    +  YR + L   
Sbjct: 360 ESRREEAIQQLCQLLHKDIHRIELFDNSHISGAFNVSGMVVFKDGEPSRQDYRTYRL--- 416

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
             +   D   M+ V+ RR+ +L+K                  +PD++I+DGG  Q+ AA+
Sbjct: 417 -GEYVSDLDSMKEVVYRRYFRLLKER--------------GRFPDLLIVDGGYLQIEAAK 461

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +++ L+V   +T+  + K              +GE L +     + + + +++DE HRF
Sbjct: 462 EIVEALDV--PVTLCGLVKNDNHRTAN--LMNAEGEILPVERDSSLFFLLTQMQDEVHRF 517

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI+ HRK R K    S LDE+ GIG +RK+ + + F ++K +  +  + +A +  + +K+
Sbjct: 518 AISYHRKLRGKAMTKSILDEVEGIGEVRKKEIWKHFKSLKRLKEADVDEIAQV--VPRKV 575

Query: 600 ACKIYNHFH 608
           A  I+N  H
Sbjct: 576 AQNIFNILH 584


>gi|81428665|ref|YP_395665.1| excinuclease ABC subunit C [Lactobacillus sakei subsp. sakei 23K]
 gi|90111069|sp|Q38WS5|UVRC_LACSS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78610307|emb|CAI55356.1| Excinuclease ABC, subunit C [Lactobacillus sakei subsp. sakei 23K]
          Length = 592

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 179/612 (29%), Positives = 286/612 (46%), Gaps = 42/612 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M DI  +++YVGKA NL+ R++SY   ++H  +   ++S+I +    +T T
Sbjct: 13  LPALPGCYLMKDINAQIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIVDFETIITST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EA LLE  +I++ +P FNI L+    +PYI IT+  + P L    D       YFGP+
Sbjct: 72  NKEAFLLEITLIQKHQPYFNIKLKRGTGYPYIKITN-ERDPRLLITGDVKKDGSYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             V A ++T+  LQR + LR C      H+ RPCL + + +C G C  E+    Y E + 
Sbjct: 131 PDVYAAQETLRFLQRVYPLRRCQG----HQGRPCLYYHMGQCLGACFQEVPEAAYTEQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           + K+FL+G   N+K+ +   M  A  +  +E A   RD+L  +         I N     
Sbjct: 187 KIKRFLNGQVDNVKKDLTEKMATAAQEMQFERAAELRDQLRYIEATVEKQKIISNDHTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +            +                 +   P  
Sbjct: 247 DLFAFYMDKGWLSIQIFFIRQARLIRREKRLFPCVNTPEEELATFILQWYNRKNNVLPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           IL+ +  E+  L +I        +V I  P++GEK+ ++E A  N+              
Sbjct: 307 ILVPDGIEKQVLSDIL-------QVPIRTPQRGEKKALMEMAQKNSRLVLEEKFRLLELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                    +      LPH    IE +D+SHI G   V  MV   +    K  YRK+ L 
Sbjct: 360 NRKTVGAQDEIMDALGLPHG-HVIEAFDHSHIQGTDPVSAMVTFVDGRAEKKLYRKYKLT 418

Query: 419 PNDVK-TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   ++ A  R V+ RR+S+L+K  + L              PD++++DGG  +L+
Sbjct: 419 QTAERAGANEDANTREVIYRRYSRLLKEGKAL--------------PDLILMDGGVVELN 464

Query: 478 AAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           AA+ VL+ +L +   I +  + K           F +  + + L+ +    Y + R++DE
Sbjct: 465 AAKDVLENELGLT--IPVAGMVKDNHHKTAS-LLFGEADQTIQLDPKSQGFYLLTRIQDE 521

Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            HRFAI+ HR+ R K +  S LD+I G+GP  +  LL++FG++K I  +S E L ++ GI
Sbjct: 522 VHRFAISFHRQLRGKNSLSSKLDDIKGVGPKTRTKLLKNFGSMKHIKDASVEELEAL-GI 580

Query: 596 SKKIACKIYNHF 607
           SK +A  I    
Sbjct: 581 SKTVAQTIKLSL 592


>gi|160914271|ref|ZP_02076492.1| hypothetical protein EUBDOL_00281 [Eubacterium dolichum DSM 3991]
 gi|158433898|gb|EDP12187.1| hypothetical protein EUBDOL_00281 [Eubacterium dolichum DSM 3991]
          Length = 592

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 178/610 (29%), Positives = 288/610 (47%), Gaps = 45/610 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M +  G ++YVGKA  L+ R++ Y H   H  + T +++ I++  + V  +
Sbjct: 14  LPALPGCYLMKNKQGEIIYVGKAKKLKNRVRQYFHGA-HDFKTTRLVANIDDFEYIVCGS 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE N+IK+  P++NI+  DDK++PY+ +T K K P L   R++   + +YFGPF
Sbjct: 73  EKEALLLEINLIKKHTPQYNIMFMDDKTYPYLKLT-KEKAPLLRVVRNTKDKKATYFGPF 131

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A   T   L R + LR C     R   + CL + + +C  PC   I  + Y +   
Sbjct: 132 PDSSAAYDTQKLLNRIYPLRKCN----RLPKKECLYYHMGQCLAPCVNVIDEQVYADMAQ 187

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
             +KFL G    + E++   M +A+    +E A      + A+ H+       +      
Sbjct: 188 GIRKFLRGDVKEIVERLKAEMKEASEALQFEKAQEKLSLIQAIEHVTARQQIDFKDHKDR 247

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  Y +K    IQ  F   G+          T       +    F+ Q+Y + P P+ 
Sbjct: 248 DVFGYYVDKGYISIQGFFMRGGKLIERTLSI--TPLYEDAMEAFQSFVLQYYANNPLPQE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS-TEIS 361
           ILL +E +   L++I   K       I  P +G+K K++E  L NA  SH QK       
Sbjct: 306 ILLPKEYDVEHLVQILDTK-------IVQPIRGDKLKLVEMVLANAKNSHEQKFELISRK 358

Query: 362 HQMILKDFTKKFA-LPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
                +   +    L     RIE++DNSHI G   V  MVV  +    K  YR + L   
Sbjct: 359 DHRREEGMQQLCQLLGKEIHRIELFDNSHISGAYNVSGMVVYKDGEPSKQDYRTYRLQE- 417

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
               + D   M+ V+ RR+ +L+K                  +PD++I+DGG  Q+ AA+
Sbjct: 418 ---YRSDLDSMKEVIYRRYVRLLKER--------------GKFPDLLIVDGGWLQIEAAK 460

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            ++  L V   IT+  + K              +G  L ++    + + + +++DE HRF
Sbjct: 461 EIIDALEVS--ITVCGLVKDDNHRTSN--LMDSEGRVLAVSKESSLFFLLTQMQDEVHRF 516

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI+ HR+ R K    S LDE+ GIG +RK+ +   F ++K + ++S E +A++  +  ++
Sbjct: 517 AISYHRRLRGKGMTKSILDEVEGIGNVRKKKIWNHFKSLKRLKQASVEEIAAV--VPMQV 574

Query: 600 ACKIYNHFHK 609
           A  +YN  H 
Sbjct: 575 AQSVYNILHN 584


>gi|157828722|ref|YP_001494964.1| excinuclease ABC subunit C [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933449|ref|YP_001650238.1| excinuclease ABC subunit C [Rickettsia rickettsii str. Iowa]
 gi|189038081|sp|B0BYA6|UVRC_RICRO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038082|sp|A8GST1|UVRC_RICRS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157801203|gb|ABV76456.1| excinuclease ABC subunit C [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908536|gb|ABY72832.1| excinuclease ABC subunit C [Rickettsia rickettsii str. Iowa]
          Length = 639

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 231/630 (36%), Positives = 346/630 (54%), Gaps = 24/630 (3%)

Query: 1   MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+ +  PE  GVY+M D+  +VLYVGKA NL+KR+ +Y   +N  ++   MI+    +
Sbjct: 11  IKSKLIDAPERSGVYRMFDVNKQVLYVGKAKNLKKRLTNY-IKSNLDNKTLRMIANTCFL 69

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I +  +H  P L K+R  +   
Sbjct: 70  EYSITNSEVEALLLEAQLIKKFQPKFNILLKDCKSFPFIKLRLEHDFPQLLKYRGKTLSD 129

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G +FGPFAS   V  T+  LQ+ F LRSC D+ F  RTRPCL ++IKRC  PC G+I+ E
Sbjct: 130 GKFFGPFASSVDVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V + K FL G    L+E ++R M + + +  +E A   RDR+ ALS++Q      
Sbjct: 190 DYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++       C++   +  GQ  G   +F  +   ST  ++L YFL QFY  
Sbjct: 250 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309

Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I+++ E  +   ++E         ++ ITVP +G K K+++ A INA  S  Q 
Sbjct: 310 QHVPAAIIINHEINDKENVIEAIKKINNILQLNITVPNKGGKAKLVQNAEINALFSLEQY 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L     +Q I+ +  + F L  IP+RIEIYDNSHI G  AVG MVV G+ GF K +YR F
Sbjct: 370 LKKFAKNQEIIFEIKELFGLSAIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVF 429

Query: 416 NLH-PNDVKTQDDCAMMRMVLERRFS--------------QLIKNEENLNFHPKKQEYSF 460
           N++ P+ V    +    + +++  F                     + L     +     
Sbjct: 430 NVYAPSLVCHSRESGDPKRLMDSCFRGNGIKNCWGDIKGDDYEMLRQVLTRRLTRLRQEP 489

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
              P ++I+DGGKG L   + V+ K   E  I  + ++KG  R+AG E+F V   E   L
Sbjct: 490 HKLPSLMIIDGGKGHLGVVKEVMDKF--EMNIPFVCMSKGVDRNAGFEQFHVIGKEVFTL 547

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579
           +   P++ ++Q LRDEAH FAI  HR  R +A   S LD+I G+G  RK+ LL  FG+ K
Sbjct: 548 DKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISRLDDIEGVGETRKKALLHYFGSYK 607

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609
            +  ++   LA + GI+K +A  I+N  H+
Sbjct: 608 AVCDATIYELAKVNGINKLLAEMIFNVLHR 637


>gi|153807188|ref|ZP_01959856.1| hypothetical protein BACCAC_01466 [Bacteroides caccae ATCC 43185]
 gi|149130308|gb|EDM21518.1| hypothetical protein BACCAC_01466 [Bacteroides caccae ATCC 43185]
          Length = 609

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 167/622 (26%), Positives = 301/622 (48%), Gaps = 47/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGIYQYLNAEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P +++ R       SY+GP
Sbjct: 79  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFRTRKIIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E+
Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCSLNLTPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    +   +   M     +  +E A   +++   + + ++ ++ + 
Sbjct: 198 YLKNIDEIKEILKGNTQEISRMLLEKMQTLAGEMKFEEAQKIKEKYLLIENYRSKSEVVS 257

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
             +    ++  +    N A I       G      TF  K     +  ++L+  + +   
Sbjct: 258 AVLHNIDVFSIEEDDSNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L            V  TVP++G+K+K+++ +++N  +    +
Sbjct: 318 RYKSRSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSILNVKQYKADR 367

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           +        E     ++K+  ++  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 368 MKQAEKLNPEQRSMRLMKEIQQELHLERPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V++RR+ + I+                   PD++I 
Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVKRRYQRAIEE--------------SSPLPDLIIT 471

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK   R    E  F    + + +    P+   
Sbjct: 472 DGGKGQMEVVREVIED-ELGLNIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQHTPLFRL 529

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAI+ HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDSIKGIGEKTKTALLKEFKSVKRIKEASLED 589

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           +++I  I +  A  +    +  
Sbjct: 590 ISAI--IGEAKAKTVKEGLNNE 609


>gi|62261597|gb|AAX78001.1| unknown protein [synthetic construct]
          Length = 647

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 184/615 (29%), Positives = 319/615 (51%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ R+ SY        +   M+ QI  I  T+T 
Sbjct: 43  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQIARIEITITP 102

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 103 SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRSKSAYKKGQCFG 161

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N++Q+ F +R C +S ++ R RPCL +QIK C  PC G +S ++Y E 
Sbjct: 162 PYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKCCLAPCVGLVSQQQYDEQ 221

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G   ++ E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 222 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVVLRKLQQQQIVDIQEDK 281

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 282 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 340

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   +    +  K ++ A +NA +     
Sbjct: 341 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWLKLAEVNARQKLNIY 400

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +   L    KRIE +D SH  G + +   VV  ++G  +  +R++
Sbjct: 401 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDDGEDRKSHRRY 460

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K+ DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 461 NIKD--IKSGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 503

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 504 IHQAEAVFREYGIQDKVQLVSLGKGIERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 563

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+S + +A ++
Sbjct: 564 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALMMYFGGWQELSRASVDEIAKVK 623

Query: 594 GISKKIACKIYNHFH 608
           GISKK+A +I+  FH
Sbjct: 624 GISKKLAQEIWECFH 638


>gi|15892787|ref|NP_360501.1| excinuclease ABC subunit C [Rickettsia conorii str. Malish 7]
 gi|32130306|sp|Q92HA7|UVRC_RICCN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|15619968|gb|AAL03402.1| excinuclease ABC subunit C [Rickettsia conorii str. Malish 7]
          Length = 639

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 230/630 (36%), Positives = 343/630 (54%), Gaps = 24/630 (3%)

Query: 1   MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+ +  PE  GVY+M D+  +VLYVGKA NL+KR+ +Y   +N  ++   MI+    +
Sbjct: 11  IKSKLIDAPERSGVYRMFDVNKQVLYVGKAKNLKKRLTNY-IKSNLDNKTLRMIANTCFL 69

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            +++T +EVEALLLEA +IK+ +P+FNILL+D KSFP+I +   H  P L K+R  +   
Sbjct: 70  EYSITNSEVEALLLEAQLIKKFQPKFNILLKDCKSFPFIKLRLDHDFPQLLKYRGKTLSD 129

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G +FGPFAS   V  T+  LQ+ F LRSC D+ F  RTRPCL ++IKRC  PC G+I+ E
Sbjct: 130 GKFFGPFASSVEVNTTLTELQKIFKLRSCTDNYFNSRTRPCLQYEIKRCYAPCVGKINKE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V + K FL G    L+E ++R M + + +  +E A   RDR+ ALS++Q      
Sbjct: 190 DYRDLVTQVKDFLQGRTKELQENLSRKMEELSSQMRFEEAAEIRDRIKALSYVQLKAGVS 249

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D  ++       C++   +  GQ  G   +F      ST  ++L YFL QFY  
Sbjct: 250 DVVKDADIIAIVEKNGHYCVEVFLYRAGQACGNIPYFPTATENSTKEEVLEYFLLQFYQK 309

Query: 297 KPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I+++ E  +   ++E         ++ ITVP +G K K+++ A  +A  S  Q 
Sbjct: 310 QHVPAAIIINHEINDKENVIEAIKKINNILQINITVPNKGGKAKLVQNAETHALFSLEQY 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L     +Q I+ +  + F L  IP+RIEIYDNSHI G  AVG MVV G+ GF K +YR F
Sbjct: 370 LKKFAKNQEIMFEIKELFGLSEIPERIEIYDNSHIQGKFAVGVMVVAGKVGFDKKEYRVF 429

Query: 416 NLH-PNDVKTQDDCAMMRMVLERRFS--------------QLIKNEENLNFHPKKQEYSF 460
           N+H P+ V    +    + +++  F                     + L     +     
Sbjct: 430 NVHTPSLVCHSRESGDPKRLMDSCFRGNGIKNCGGDIKGDDYEMLRQVLTRRLTRLRQEP 489

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
              P ++I+DGGKG L   + V+ K   E  I  + ++KG  R+AG E+F V   E   L
Sbjct: 490 HKLPSLMIIDGGKGHLGVVKEVMDKF--EMNIPFVCMSKGVDRNAGFEQFHVIGKEVFTL 547

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579
           +   P++ ++Q LRDEAH FAI  HR  R +A   S LD+I G+G  RK+ LL  FG+ K
Sbjct: 548 DKNLPVMKYLQILRDEAHNFAIKNHRLGRSRAIKISRLDDIEGVGETRKKALLHYFGSYK 607

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609
            +  ++   LA + GI+K +A  I+N  H+
Sbjct: 608 AVCDATIYELAKVNGINKLLAEMIFNVLHR 637


>gi|304314598|ref|YP_003849745.1| excinuclease ABC, subunit C [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588057|gb|ADL58432.1| excinuclease ABC, subunit C [Methanothermobacter marburgensis str.
           Marburg]
          Length = 579

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 186/616 (30%), Positives = 308/616 (50%), Gaps = 46/616 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
              ++P+  GVY   D   RVLYVGK+ +++KR+ SY    +   R+  M+  +++I + 
Sbjct: 6   DPGKLPDRTGVYIFRDENDRVLYVGKSVSIRKRVASYFRE-HENPRLRVMMRHLDSIEYI 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T  E EAL+LE+N+IKR +P +N+ L+DDK +P+I IT   + P +   R        Y
Sbjct: 65  LTENEKEALILESNLIKRYRPPYNVRLKDDKRYPFIKIT-DEEYPRVIITRTIGGDSARY 123

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPF    +V KT+  ++  F +RS      R    PCL  QI  C  PC G IS E Y+
Sbjct: 124 YGPFTDTGSVRKTLKFIKSLFKIRS-----CRRMDGPCLNSQIDLCHAPCDGGISREDYL 178

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E +     F  G    + E +   M  A+ K ++E A + RD++ ++  +     + +  
Sbjct: 179 EIIERVDLFFQGRYREVIEALEAEMRDASEKLEFERAAVIRDQIESIREVMERQYAAFTD 238

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +L  + + + +       G+  G   F L+  ++    +IL  FL+Q+Y    
Sbjct: 239 SIDQDIVALETSGDNSVVVVLQIRDGKITGKDDFMLRGSAD--RREILESFLKQYYAIPR 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
              + +L +      ++     +  G +V+I  P+ G  R+++  A  NA    +  L  
Sbjct: 297 YIPSEILVQYPVGDEVIAEWLSELRGGEVRIHSPEGGSGRRLLNIAWKNA----SVILQQ 352

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +   +  L +   +  LP IP+RIE  D S+I G  A G + V  +       YR++ + 
Sbjct: 353 KGKVKDALLELKGELKLPSIPRRIEGLDISNIGGEHATGSVAVFLDGKPAPGMYRRYRIR 412

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD AMMR ++ RR+S     +                 PD+V++DGGKGQLSA
Sbjct: 413 T---MGPDDYAMMRELVMRRYSGDETEK-----------------PDLVLIDGGKGQLSA 452

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L+   V+  + ++ IAK  +     + +     E + ++  D  L  ++ LRDEAH
Sbjct: 453 ALDALRSCGVD--LPLVGIAKREE-----DVYLPGLSEPVEVS--DGALQLLRHLRDEAH 503

Query: 539 RFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFA+  HR+ R +K+  S LD I G+GP RKR LL+ FG+V+ I  +S E LA++ G+++
Sbjct: 504 RFAVEYHRRIRDRKSLESELDGIRGVGPRRKRALLEHFGSVEGIGNASVEELAAVRGMNR 563

Query: 598 KIACKIYNHFHKNTSH 613
            +A +IY HF +  + 
Sbjct: 564 PVAERIYRHFRRGDNG 579


>gi|225631233|ref|ZP_03787924.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591071|gb|EEH12262.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 605

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 236/612 (38%), Positives = 350/612 (57%), Gaps = 26/612 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +  P+  GVY+M+    +VLYVGKA NL+ R+  Y+   N + RI  M+ Q+  +   
Sbjct: 8   QIKSSPQSCGVYKMVGDKNKVLYVGKAKNLKSRLSDYLQFENLSERIRVMLLQVIKVEIF 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGS 120
           +T  E+EALLLEA +IK LKP +NI+L+D K +PYI I+ KH  P + K+R      +  
Sbjct: 68  ITENEIEALLLEAQLIKSLKPLYNIVLKDGKFYPYITIS-KHDYPRIAKYRGKFKKNEFH 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF S  AV++TI SLQ+ F LR C+D  F    RPC+ +QIKRCS PC  +I+ + Y
Sbjct: 127 YYGPFTSAAAVKQTILSLQKAFLLRVCSDQYFSSTKRPCIEYQIKRCSAPCINKITKDDY 186

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238
            + V +A+  L G N  +KE++   M + + +E+YE A I+RDR+  L  IQ  +   S 
Sbjct: 187 CQSVKQARNTLLGRNKEVKEQLLFTMRKCSSEENYELAAIYRDRVKFLEQIQIQHTDFSF 246

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D FS+   ++LACI    F    N G+  +F +   + +N +ILS FL  FY    
Sbjct: 247 EKDADFFSIVREEDLACISVLSFRNKDNYGSTPYFAENSGDHSNDEILSTFLVNFYNSAN 306

Query: 299 CPE-NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
            P   I + +   +  ++E + +K     VK+   K  ++R +++    N+  S  QKL 
Sbjct: 307 IPPIQIYVPDSIVDKEIIEQALYKVAQKPVKVLHAKNKKERDLLKFVYDNSQHSLEQKLI 366

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              ++   L++ +K F LP+IPKRIE+YDNSHI G   +G MVV G+ GF+K++YRKF +
Sbjct: 367 DYRNNLEKLEELSKIFLLPNIPKRIEVYDNSHIFGNQQIGVMVVAGQGGFLKSEYRKFTI 426

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                 + DD  MMR VL RRFS  IK                   PD +++DGG G +S
Sbjct: 427 KEK--FSGDDYKMMREVLTRRFSGNIK----------------GIIPDFLLIDGGPGHVS 468

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
             Q VL+ LN+   +    +AKGP R+AG E+F++   E   L     ++ ++Q LR+EA
Sbjct: 469 IVQNVLEVLNI--NVPFACMAKGPDRNAGNERFYMLGREEFSLANDSKVMLYLQSLRNEA 526

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT+HRK+R K    S L +I GIG  RK+ L+  FG+VK IS++S   + ++ GIS
Sbjct: 527 HRFAITSHRKKRDKQFIVSQLSKIPGIGNKRKKALMSYFGSVKNISKASLAEIQNVPGIS 586

Query: 597 KKIACKIYNHFH 608
           K +A  I  + +
Sbjct: 587 KGLAEVILKYVN 598


>gi|270291408|ref|ZP_06197630.1| excinuclease ABC, C subunit [Pediococcus acidilactici 7_4]
 gi|270280254|gb|EFA26090.1| excinuclease ABC, C subunit [Pediococcus acidilactici 7_4]
          Length = 594

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 183/607 (30%), Positives = 295/607 (48%), Gaps = 41/607 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG YQM ++  +++YVGKA NL+ R++SY   ++H  +   ++S+I +  + VT +
Sbjct: 13  LPDKPGCYQMKNLNSQIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIADFDYIVTAS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +IK+ +P +NI L+    +PYI IT+  K P +    +     G YFGP+
Sbjct: 72  DKEAFLLEITLIKKYQPYYNIKLKKGTGYPYIKITN-EKDPRMQIVSNVRRDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ L++ + LR C         RPCL + + +C G C  E+  E+Y + + 
Sbjct: 131 PNVYAAEETLHFLEKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKEVPKEEYDQQIA 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K FL G    +K+ +   M QA+   ++E A   RD++  +         I N     
Sbjct: 187 KIKSFLRGNVAKVKKSLQAKMQQASEAMEFERAAEIRDQIHYIEVTVEKQRIISNDRTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +            S+  +             +K  P  
Sbjct: 247 DLFNFYLDKGWLSIQIFFIRQSRLMKREKRLFPIASDVADEFSSFILQFYNNKNKVLPNE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           IL+ E  +   + EI         V +  PK+GEKR ++  A  NA              
Sbjct: 307 ILVPEGLDNQIISEIL-------GVPVRTPKRGEKRDLMNLARENAQITLEEKFRLLELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +K+ T    +P    RIE +D+SHI G  +V  MVV  +    K  YRKF L+
Sbjct: 360 ESKTVGAMKEITDALGIP-EGHRIEAFDHSHIQGADSVSAMVVFTDGKPDKKMYRKFKLN 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ A  R V+ RR+ +L+K  ++L              PD++++DGG  QL+A
Sbjct: 419 T--VDHADEAASTREVIRRRYVRLLKEHQSL--------------PDLILMDGGDVQLNA 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  + K  K     +  F  + + + L+ +    Y +QR++DE H
Sbjct: 463 ARDVLVN-ELSLHIPVAGMVKNDKHKTA-DLIFGDQDQRVQLDPKSQGFYLVQRIQDEVH 520

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+   K +  S LD ING+GP  +  LL+ FG++  I  +  E + ++ GIS 
Sbjct: 521 RFAITFHRQMHAKNSLSSQLDSINGVGPKTRNKLLREFGSLNKIRDAKIEEIEAL-GISA 579

Query: 598 KIACKIY 604
           K+A  I 
Sbjct: 580 KVAKTIK 586


>gi|110636600|ref|YP_676807.1| excinuclease ABC subunit C [Cytophaga hutchinsonii ATCC 33406]
 gi|119367645|sp|Q11YP9|UVRC_CYTH3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|110279281|gb|ABG57467.1| excinuclease ABC, subunit C [Cytophaga hutchinsonii ATCC 33406]
          Length = 596

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 181/621 (29%), Positives = 297/621 (47%), Gaps = 49/621 (7%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61
            +++P  PGVY+   I   ++YVGKA +L+KR+ +Y     N   +   M+ +I +  +T
Sbjct: 11  LKELPSSPGVYRFYSIEKELIYVGKAKSLRKRVANYFTNKKNLDQKTRSMVRKIYHAEYT 70

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +  +E EALLLE N+IK  KP++N+LLRDDK++P+I ++     P L   R     +G Y
Sbjct: 71  LVNSEYEALLLENNLIKENKPKYNVLLRDDKTYPFICLSSA-DFPTLTTTRKIDKKKGEY 129

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
           FGP+ S  A+   + SL++TFF+R+C       ++  H+ + CL + I  C GPC G+  
Sbjct: 130 FGPYTSGRAMHSLVESLRKTFFIRTCDLNLTKQNIDAHKFKVCLEYHIGNCKGPCEGKQE 189

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN- 235
            E Y   + + +  L G   ++K+     M  A     +E A   ++R  ++  ++  + 
Sbjct: 190 KEDYDVSIIQVRNILKGNFSSVKKYYQEKMLSAAEDMQFEKAQFFKERYNSVLGLEKSSL 249

Query: 236 --DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ-ILSYFLRQ 292
             +   N ++ +++    N A +       G      T  +K   + T  + ++      
Sbjct: 250 IVNPDINNLEVYTIVKRLNRASVNFMSILHGSIIKARTIEMKAVLDETEEELLMHALFEI 309

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR-- 350
                   + I+ + E    S                  P++G+K+K+I+ +L NA    
Sbjct: 310 HEEGWDSTKEIICNIELPILSTYCKVSI-----------PQRGDKKKLIDLSLKNAWHTL 358

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           +       E     +LK      +L  +P  IE +DNS+I G + V  MV        K 
Sbjct: 359 TRYDDQKKEKPEIRVLKTLQADLSLKELPAHIECFDNSNIQGTNPVAAMVCYKNGKPSKK 418

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR FN+    V+  +D A M  ++ RR+ ++ +                  +P ++I+D
Sbjct: 419 DYRHFNIKT--VEGPNDFASMYEIVYRRYKRMGEEG--------------LPFPTLIIID 462

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQLS A   LK LN+  +I I+SIAK  +     E FF    + L L+ +   L  I
Sbjct: 463 GGKGQLSFACQALKDLNIYGQIPIVSIAKNLE-----ELFFPGDNDPLYLDKKSESLKLI 517

Query: 531 QRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           Q++RDE HRFAIT HR++R K     +  + + GIGP   + LL  F TVK I  +S E 
Sbjct: 518 QQIRDETHRFAITFHRQKRSKDALLKTEFENLVGIGPGTVKKLLTHFKTVKRIKEASIEQ 577

Query: 589 LASIEGISKKIACKIYNHFHK 609
           L  + G SK  A  ++   +K
Sbjct: 578 LTPVIGNSK--ATILFQQLNK 596


>gi|87126817|gb|ABD21331.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202406|gb|ABD30216.1| excinuclease ABC, C subunit [Staphylococcus aureus subsp. aureus
           NCTC 8325]
          Length = 570

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 176/604 (29%), Positives = 279/604 (46%), Gaps = 43/604 (7%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D   +V+YVGKA  L+ R++SY     H  + T ++ +I    F VT +E E+LLLE 
Sbjct: 1   MKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRRFEFIVTSSETESLLLEL 59

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+ +  + ++T
Sbjct: 60  NLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPYPNAYSAQET 118

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
              L R +  R       +   + CL + I +C GPC  ++   KY +   E   FL+G 
Sbjct: 119 KKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTKEITDFLNGE 174

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNK 251
           +  + + +   M  A+   D+E A  +RD +  + ++ N    +       D F    +K
Sbjct: 175 DKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGYSVDK 234

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
              CIQ  F   G      T  +                         P+ + +    ++
Sbjct: 235 GWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKEVHVPRNLDK 294

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----STEISHQMILK 367
             +  +   K       I  P +G K+ +++ A  NA  S   K       E      ++
Sbjct: 295 EMIQSVVDTK-------IVQPARGPKKDMVDLAAHNAKVSLNNKFELISRDESRTIKAIE 347

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           +   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ +    VK  DD
Sbjct: 348 ELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIKT--VKGPDD 404

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-LKKL 486
              MR V+ RR+S+++                    PD++I+DGGKG ++    V   +L
Sbjct: 405 YKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNGVIDVLQNEL 450

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
            ++  I +  + K  K     E  +    E + L       Y + R++DE HRFAIT HR
Sbjct: 451 GLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEVHRFAITFHR 507

Query: 547 KRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI + +A  ++ 
Sbjct: 508 QTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNI-GIPENVAKNLHE 566

Query: 606 HFHK 609
             HK
Sbjct: 567 QLHK 570


>gi|218281128|ref|ZP_03487663.1| hypothetical protein EUBIFOR_00224 [Eubacterium biforme DSM 3989]
 gi|218217642|gb|EEC91180.1| hypothetical protein EUBIFOR_00224 [Eubacterium biforme DSM 3989]
          Length = 585

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 173/610 (28%), Positives = 283/610 (46%), Gaps = 45/610 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D    +LYVGKA  L+ R++SY H   H ++ T ++S I +  F VT +
Sbjct: 14  LPDAPGCYIMKDENQNILYVGKAKVLKNRVRSYFHGT-HNNKTTRLVSHIRDFEFIVTGS 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE N+IK+  P +NI+  DDK++PYI IT ++    +   R+  + +  YFGP+
Sbjct: 73  EKEALLLEINLIKKHTPPYNIMFMDDKTYPYIEITKENNF-VVRTTRNIKSKKSEYFGPY 131

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            S  +  + +  + + F +R C          PCL + + +C GPC  EI  ++  +   
Sbjct: 132 PSSQSAYEIVRLINQIFCIRKCRHIP----DSPCLYYHMHQCLGPCIHEIDPKENEKTRK 187

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           + KKFL G    + + +   M +A+    +E A    + + AL H+       +      
Sbjct: 188 KIKKFLCGDTKEVMDSLQDKMLEASENLQFEKAQEIYNTIQALEHVIEKQTIDFKDRGNR 247

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  Y +      Q  F   G+          T          + F+ Q+Y     P+ 
Sbjct: 248 DVFGYYVDSGYISFQAFFIRQGKLLERNMSI--TPLYEDEMDAFTSFIMQYYEKNVVPKE 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           IL+ +      L E            + +P +GEK+K+IE    NA  +H QK       
Sbjct: 306 ILVPQGTPVDILKEALNT-------NVHIPIRGEKKKLIEMVYKNAKEAHEQKFQLVFRK 358

Query: 363 QMILKDFTKK--FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
              LK                +E++DNSHI G   V  +VV  +    KN YR + L   
Sbjct: 359 DNELKKANAMLSKIFDANIHTVEMFDNSHIQGTFNVSGLVVFKDGIPDKNSYRHYKLDG- 417

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
               + D   M+ V+ RR+ +L+K                   PD++++DGG  Q+SAA+
Sbjct: 418 ---YRSDVDSMKEVIYRRYFRLLKEH--------------LPMPDLLLVDGGAAQISAAK 460

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            ++  L ++ R  +  + K  K +             + ++ +  + + + R++DE HRF
Sbjct: 461 EIIDMLQLDLR--VAGLVKDDKHATRA--LMDVNLNEIPIDSKSSLFFLLTRMQDEVHRF 516

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AIT HRK R K    S LD ++GIGP RK+ LL+ F ++K +  +S E L+ +  I + +
Sbjct: 517 AITYHRKLRDKSMTKSVLDTVSGIGPKRKKELLKHFKSMKQMRLASVEQLSEV--IPEDV 574

Query: 600 ACKIYNHFHK 609
           A  +Y   H+
Sbjct: 575 AKILYARLHE 584


>gi|332664106|ref|YP_004446894.1| UvrABC system protein C [Haliscomenobacter hydrossis DSM 1100]
 gi|332332920|gb|AEE50021.1| UvrABC system protein C [Haliscomenobacter hydrossis DSM 1100]
          Length = 602

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 184/623 (29%), Positives = 279/623 (44%), Gaps = 51/623 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-HRITHMISQINNIRFTVT 63
            +P+ PGVY+ L+    +LYVGKA NL+ R+ SY         R   M+     I FT+ 
Sbjct: 12  TIPKDPGVYRFLNEDDTILYVGKAKNLKNRLSSYFGERKDRLFRTQLMVKNAERIEFTIV 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE +ALLLE+++IK  +PR+N++L+DD+++ YI I  K   P ++  R        YFG
Sbjct: 72  ETETDALLLESSLIKEYQPRYNVMLKDDRTYSYICI-KKEPFPRVFFTRRVIRDGSIYFG 130

Query: 124 PFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+ S    +     L+     RT  L    +++   + + CL + IK C GPC G     
Sbjct: 131 PYTSKVRTQIIWELLRQLFPLRTCQLNLAPENIAAGKFKVCLEYHIKNCQGPCEGFEDLA 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            Y   + + K  L G    + +     MN    K ++E A   +++L A    Q  +   
Sbjct: 191 SYNAKIEQIKNILKGNFGAVIQHFKGLMNAHAEKMEFEKAQAIKEKLTAFEDYQAKSTVV 250

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                 +D FS+  ++  A I       G    T T  L  + E   A +L+Y +     
Sbjct: 251 SSSIRDVDVFSIASDEKEAYINYLRVVNGVIIHTHTQELVVNLEEEEADLLAYTIPLIRD 310

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                             L+     +     +  TVPK GEKRK++E +L N      QK
Sbjct: 311 RFNSI----------APELILPFEVQMTDKTLTTTVPKIGEKRKLLELSLKNVQYYRAQK 360

Query: 356 LSTEISHQMI-------LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
              + S           L+       +  +P  IE +DNS+I G + V   VV       
Sbjct: 361 KRDDASKTKRQSPAERILRTLQADLQMSAVPMHIECFDNSNIQGSNPVSSCVVFKNAKPS 420

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YR F +    V   +D   M+ V+ RR+ +L+   + L              P +VI
Sbjct: 421 KQDYRHFKVKT--VIGPNDFDTMKEVVFRRYRRLLDENQPL--------------PQLVI 464

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQLSAA   + +L +  ++TII IAK  +     E FF      L +N +   L 
Sbjct: 465 IDGGKGQLSAAMESIVELGLAGKMTIIGIAKRLE-----EIFFPGDSVPLYINKKSESLK 519

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            IQ+ R+EAHRFAIT HR +R K    + L+ I GIG    + LL  FG+V+ I  +   
Sbjct: 520 LIQQARNEAHRFAITFHRDQRSKNFIDTELNNIPGIGEKTAQKLLTHFGSVRKIREALAS 579

Query: 588 TLASIEGISKKIACKIYNHFHKN 610
            L  + G++K  A  +  +F K 
Sbjct: 580 ELIEVLGMAK--AKVVKAYFDKE 600


>gi|116328133|ref|YP_797853.1| excinuclease ABC subunit C [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331414|ref|YP_801132.1| excinuclease ABC subunit C [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280841|sp|Q04RU6|UVRC_LEPBJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|122284075|sp|Q051S5|UVRC_LEPBL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|116120877|gb|ABJ78920.1| Excinuclease ABC, subunit C [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125103|gb|ABJ76374.1| Excinuclease ABC, subunit C [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 609

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 177/619 (28%), Positives = 294/619 (47%), Gaps = 31/619 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +   PG Y      G VLY+GKA NL KR+++Y+  N+   +   +  +I ++ + 
Sbjct: 13  KIKNLGISPGCYLWKSRKGEVLYIGKAKNLDKRVRNYLKENHPDIKTRALQKEIFDLDWI 72

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EAL+LEA +IK+  PRFN+  +DDK +PYI ++     P +Y  R        Y
Sbjct: 73  ATGTEKEALILEATLIKKHNPRFNVRFKDDKKYPYICVSLSESFPMVYITRKLKDNGDRY 132

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           FGP++ V +  +T++ + R F +R            RPCL F + RC GPC G I  E Y
Sbjct: 133 FGPYSDVKSTRETLDIILRIFPVRKTRQVLPLPKPRRPCLNFDMGRCLGPCQGNIPVEDY 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              + +  +FL G   +L   ++  M+ ++ + D+E A  +RD L  + + +     +  
Sbjct: 193 KIVIDQVIQFLEGKKESLVGDLSIKMSASSNRMDFEKAARYRDMLQRIQNFREKQTVVSA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D       K+   +       G+     +F ++   ++ +++IL  F R +Y + 
Sbjct: 253 EGGDEDVIGFARKKDEGQVILLEVRGGRLETKKSFPIQGVLDAEDSEILGAFFRDYYLNA 312

Query: 298 P-CPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
              P  I +  +  EET+ +     ++ G++ K+  P+ G+KR +++ A  NA    T++
Sbjct: 313 ALVPPLIFVPADIQEETAAVMDVLQEKTGFRPKLKSPRGGDKRSLLKIAEKNAELGLTER 372

Query: 356 L--STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           L  +        LK+  + F+L H P  IE YD SH  G   V   V+  E    K  YR
Sbjct: 373 LLATHYRDQTASLKEIQEMFSLEHPPHIIECYDISHFQGSEPVASGVMFVEGKPFKQGYR 432

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           K+N+     K  +D  M+  V+ RR  ++   E                +PD++++DGG 
Sbjct: 433 KYNIRG--YKGINDPGMIHEVISRRLQRIANEE--------------SVFPDLIVIDGGP 476

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            QL+ A     +   E RI +I +AK  +     E +F    E  + +M    +  ++ L
Sbjct: 477 TQLAKACEAAMEAGAE-RIPMIGLAKKRE-----EIYFPGDNEPFIFDMNSSGMKLLRHL 530

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRF ++ HR RR K    S +  +  IG  R +LLL+ F   K I  ++ E L ++
Sbjct: 531 RDEAHRFGVSHHRSRRNKETMRSLIQNVPDIGLKRSKLLLRHFSGEKKIEDATKEELLAV 590

Query: 593 EGISKKIACKIYNHFHKNT 611
            GI + +A KI     K  
Sbjct: 591 PGIGENLAEKILKRIRKKE 609


>gi|312128484|ref|YP_003993358.1| excinuclease ABC subunit C [Caldicellulosiruptor hydrothermalis
           108]
 gi|311778503|gb|ADQ07989.1| excinuclease ABC, C subunit [Caldicellulosiruptor hydrothermalis
           108]
          Length = 593

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/609 (31%), Positives = 300/609 (49%), Gaps = 36/609 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
            +P  PGVY M D  G V+YVGKA NL+ R++ Y  ++     +   M+ +I ++ + VT
Sbjct: 9   NLPTSPGVYIMKDENGNVIYVGKAVNLKNRVRQYFQNSQDMPPKTRLMVRKIKDLDYIVT 68

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVEAL+LE N+IK  +P++N+LLRDDK++ YI IT+    P L   R        YFG
Sbjct: 69  DNEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSRYFG 127

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           P+ S  +V++T+  L+  F LR+C         + RPCL F I++C G C G++S E+Y 
Sbjct: 128 PYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEEEYQ 187

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V  A K LSG    + E++   M +      +E A   +++L++L  I      IY  
Sbjct: 188 KLVERAVKVLSGKGDEIVEELKTKMFEYAENLMFEKAQEIKNKLSSLERIITKQKVIYAD 247

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297
               D  +   +     I       G+      F LK D +         FL Q+Y+D  
Sbjct: 248 DRSEDVINFAKDHTHIAIVVLIIRNGKLINKEEFVLKADED-----TFERFLEQYYSDVV 302

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  I++    E    +E    K YG+KVK+TVPKQGEK+++++ A  NA  S   +  
Sbjct: 303 SLPNEIIIPHRIENADNIEKMIEKLYGFKVKVTVPKQGEKKQLLDMAKKNAEISLANRQR 362

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            +  +   L        L +  ++IE YD S+I G   VG +VV  +  F K  YRKF +
Sbjct: 363 VDDVYAEALLTLKNILGLENEIEKIESYDISNIAGADNVGTLVVFEDGRFNKEFYRKFKI 422

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                + QDD   ++ VL RRF+ L K                   PD++++DGG+ Q++
Sbjct: 423 KG--FEGQDDIRSVKEVLTRRFTNLEK---------------HGRIPDLILIDGGQNQVN 465

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA  VL  L     I +  + K  +         +  G+ + +     +   I  +++E 
Sbjct: 466 AALEVLNTLGFS--IPVAGMVKDDRHKTRD---LIYNGKEVGIQEYPLVYKLIYAIQEET 520

Query: 538 HRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA+  HR+ RKK    S LDEI GIG  RK  L ++FG++  + ++S E +     I 
Sbjct: 521 HRFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAADIP 580

Query: 597 KKIACKIYN 605
            ++A KI  
Sbjct: 581 YEVALKIKE 589


>gi|184155101|ref|YP_001843441.1| excinuclease ABC subunit C [Lactobacillus fermentum IFO 3956]
 gi|227514774|ref|ZP_03944823.1| excision endonuclease subunit UvrC [Lactobacillus fermentum ATCC
           14931]
 gi|260663643|ref|ZP_05864532.1| excinuclease ABC, C subunit [Lactobacillus fermentum 28-3-CHN]
 gi|238692962|sp|B2GBC9|UVRC_LACF3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|183226445|dbj|BAG26961.1| excinuclease ABC subunit C [Lactobacillus fermentum IFO 3956]
 gi|227086883|gb|EEI22195.1| excision endonuclease subunit UvrC [Lactobacillus fermentum ATCC
           14931]
 gi|260551869|gb|EEX24984.1| excinuclease ABC, C subunit [Lactobacillus fermentum 28-3-CHN]
 gi|299783054|gb|ADJ41052.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Lactobacillus fermentum CECT 5716]
          Length = 603

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 176/611 (28%), Positives = 286/611 (46%), Gaps = 40/611 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +   +++YVGKA NL+ R++SY   ++HT ++  M+ ++ +    VT +
Sbjct: 13  LPDQPGCYLMKNANAQIIYVGKAKNLKNRVRSYF-KSSHTGKVAAMVEEVADFETIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             E+ LLE  +I++ +P +NI L+    +PYI IT+  + P +            YFGP+
Sbjct: 72  NKESFLLEITLIQKHQPYYNIKLKRGTGYPYIKITN-ERDPIIKITGQVKKDGAYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ +Q+ F LR C         RPCL + + +C G C  E+  E+Y     
Sbjct: 131 PNVYAAEETVHFIQKVFPLRRCHGYQ----GRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
             K FL+G    +K+++   M +A  + ++E A   RD+L  +         I N     
Sbjct: 187 RIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +              +               +K  P+ 
Sbjct: 247 DLFNFYLDKGWLSIQVFFIRQARLMKREKRLFPVVDTAEEEMTSFILQFYNRRNKLLPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLST 358
           ILL E      + EI         V +  P++GEKR +++ A  NA    +         
Sbjct: 307 ILLPEGLPNQEIEEIL-------GVPVRTPQRGEKRDLLDMAKENAILSLNEKFRLLEMD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  +K+ T +  LP     IE +D+SHI G   V  MVV       K  YRK+ L 
Sbjct: 360 RQKTTGAMKEITDELGLPTG-HVIEAFDHSHIQGADPVSAMVVFVNGEPAKKLYRKYKL- 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ A  R V+ RR+S+L+K E+                PD++++DGG  Q+ A
Sbjct: 418 TTVVDHADEAASTREVIFRRYSRLLKEEK--------------PMPDMIMMDGGPIQMEA 463

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL +  +   I +I + K  K     +  +      + L+ R    Y +QR++DE H
Sbjct: 464 AKDVL-ENQLGLNIPVIGMVKNDKHQTA-DLLYGDDAHHVNLDPRSQGFYLVQRIQDEVH 521

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HRK   K +  S LDEI+G+GP  +  LL++FG++  I+ +  E + ++ GI++
Sbjct: 522 RFAITYHRKVHTKHSLSSRLDEIHGVGPRTRNKLLKAFGSINKIAVAPVEEIRAL-GINQ 580

Query: 598 KIACKIYNHFH 608
             A  I     
Sbjct: 581 TTAQLIKVSLQ 591


>gi|94985227|ref|YP_604591.1| excinuclease ABC, C subunit [Deinococcus geothermalis DSM 11300]
 gi|119367646|sp|Q1IZB2|UVRC_DEIGD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|94555508|gb|ABF45422.1| excinuclease ABC, C subunit [Deinococcus geothermalis DSM 11300]
          Length = 616

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 173/634 (27%), Positives = 298/634 (47%), Gaps = 49/634 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY      G  +Y+GKA NL+ R+  +  +   + + T +    +++ F  T  
Sbjct: 9   LPASPGVYIFR-RGGTPIYIGKAVNLRSRVAQHFKAGGKSGKFTAL---ADSLDFITTRN 64

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEAL+LEAN+IK+ +P +N+LL+DDK +P++ +T+    P L   R       SY+GP+
Sbjct: 65  EVEALILEANLIKQHRPHYNVLLKDDKHYPFLKLTN-EAFPMLVVTRRVLKDGASYYGPY 123

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               AV +  + +   F LR  +    + + RPCL + + RC GPC      + Y + V 
Sbjct: 124 PDASAVRRVKHLIDTMFPLRKNSGLPMQKKPRPCLNYHMGRCLGPCVDAADPQAYAQVVE 183

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH----IQNHNDSIYNR 241
           + K  L G    +  ++  +M  A   +D+E A   RDR+ A+       Q+   S    
Sbjct: 184 DVKALLEGRAAPVIARLKADMQAAARAQDFEQAARLRDRVQAVEKLFGTEQHAYVSEETD 243

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS-ESTNAQILSYFLRQFYTDKP-C 299
           +D   +      A +Q      G+  G    FL      +   ++L  F++ +YT     
Sbjct: 244 LDFLGVAQAGEYAMVQLFRLRGGRVVGRDKRFLVGAEGGADVGEVLGAFVQDYYTQATHV 303

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLS 357
           P  ILL  E E+  +      ++ G +V++  PK+G+K +++E A  NA         L 
Sbjct: 304 PPLILLPAEFEDAPVWSAFLSERAGRRVEMRTPKRGDKAELVEMAQRNAAAGLESELALL 363

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                   L    +  ALP  P RIE YDNS++ G + V  MVV       ++++R+F +
Sbjct: 364 ERRGDHPGLDALREVLALPDRPWRIEGYDNSNLFGSNIVSGMVVFEGGRARRSEHRRFKV 423

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M   + RR +  + ++                 PD++++DGG+GQ+ 
Sbjct: 424 RG--LDHPDDYAAMHQTITRRLTGSLADK--------------LPLPDLILIDGGRGQVH 467

Query: 478 AAQGVLKKLNVENRITIISIAKGPKR-------------SAGMEKFFVKKGEALVLNMRD 524
           AA   L+  +V  R+ ++ +AK  +R               G E      G  L+L    
Sbjct: 468 AALDALRAADV--RVPLVGLAKREERIILPGRFGAQWWLETGTEV---GVGGELLLPHTH 522

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           P L  +  +RDE H +A++ HR  R  +   S  D++ GIG  R+  LL+ F +++ ++ 
Sbjct: 523 PALRVLIGVRDEVHHYAVSYHRTLRGEQMLRSVFDDLPGIGQKRRDALLEHFTSLEDLAA 582

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTSH-TPT 616
           +  E +A++ G++ + A  +     + T++ TPT
Sbjct: 583 APVERIAAVPGMNLRAAQSVKKFLAERTANGTPT 616


>gi|227544991|ref|ZP_03975040.1| excision endonuclease subunit UvrC [Lactobacillus reuteri CF48-3A]
 gi|300909974|ref|ZP_07127434.1| excision endonuclease subunit UvrC [Lactobacillus reuteri SD2112]
 gi|227185034|gb|EEI65105.1| excision endonuclease subunit UvrC [Lactobacillus reuteri CF48-3A]
 gi|300892622|gb|EFK85982.1| excision endonuclease subunit UvrC [Lactobacillus reuteri SD2112]
          Length = 603

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 181/615 (29%), Positives = 290/615 (47%), Gaps = 42/615 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +I  +++YVGKA NL+ R++SY   ++HT ++  M+S++ +    VT T
Sbjct: 13  LPDKPGCYLMKNINDQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             E+ LLE  +I++ +P FNI L+    +PYI IT+  + P +          G YFGP+
Sbjct: 72  NKESFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQIKIVSKIKKDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ +Q+ + LR C         RPCL + + +C G C  ++   +Y E + 
Sbjct: 131 PNVYAAEETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKDVPKSEYEEQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K FLSG    +K ++ + M  A    ++E A   RD+L  +         I N     
Sbjct: 187 KIKSFLSGNTATVKRQLTKKMQLAAENMEFERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +              +               +   P  
Sbjct: 247 DLFNFYMDKGWLSIQIFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           ILL +      + EI         V +  P +GEKR ++  A  NA              
Sbjct: 307 ILLPKGLPNKEISEIL-------GVPVRTPVRGEKRDLLAMAHENAQLSLDEKFRLLEMD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      +K+ T    LP    RIE +D+SHI G   V  MVV       KN YRK+ L 
Sbjct: 360 QSKTTGAMKEITDALGLP-EGHRIEAFDHSHIQGADPVSAMVVFVNGEPAKNFYRKYKLK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   D+ A  R V+ RR+S+L+K  +                PD++ +DGG+ Q+ A
Sbjct: 419 T-VINHADEAASTREVIRRRYSRLLKENK--------------PMPDMIFMDGGEIQMDA 463

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L ++  I ++ + K  K     +  F      + LN R    Y +QR++DE 
Sbjct: 464 AKDVLENELGLD--IPVVGMVKNDKHQTA-DLLFGDDDHHINLNPRSQGFYLVQRIQDEV 520

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K +  S LDEI G+GP  +  LL+ +G++  I+++S + + S+ GI+
Sbjct: 521 HRFAITFHRRVHTKHSLSSRLDEIKGVGPRTRTKLLKKYGSITKIAQASVDEIHSL-GIN 579

Query: 597 KKIACKIYNHFHKNT 611
           +  A  I     KN 
Sbjct: 580 RPTAQLIKVSLQKNA 594


>gi|255994529|ref|ZP_05427664.1| excinuclease ABC subunit C [Eubacterium saphenum ATCC 49989]
 gi|255993242|gb|EEU03331.1| excinuclease ABC subunit C [Eubacterium saphenum ATCC 49989]
          Length = 626

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 187/629 (29%), Positives = 307/629 (48%), Gaps = 38/629 (6%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++PE PGVY   D  G+V+YVGKA NL+KR++SY      + ++ +M+ QI    + VT
Sbjct: 9   KKLPEVPGVYLHKDSTGKVIYVGKANNLKKRVQSYFSKTVKSRKVAYMVRQITEFEYIVT 68

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             E EAL+LE N+IK+  PR+N+LL DDK++PYI I++  + P + K R        YFG
Sbjct: 69  ANEKEALILECNLIKKYMPRYNVLLTDDKTYPYIKISEDEEYPRITKTRRIEKDGAKYFG 128

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P++   A  + ++ L + + L+ C    F    R CL + I +C G C G+ + E Y++ 
Sbjct: 129 PYSDEFAANEIMDLLNKIYRLKKCKLQKFPDGMRACLNYHIGQCDGMCIGKGNREDYLDR 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYN 240
           + +AK FL G + +L   + + M +A+    YESA ++RD + +   I            
Sbjct: 189 IEKAKDFLQGRDKSLIHTLRKKMQEASDGMLYESAAMYRDYITSAKSILEKQSASSVGMG 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY-TDKPC 299
            +D            +   F   G+  G   + ++ +       +L  F++Q Y      
Sbjct: 249 DIDVLVPIVTDTAIKMLVFFIRDGKTCGREIYNMQQELAEGEEALLEGFIQQNYVQGAYF 308

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ I+L  E  +  LLE    +  G KV IT P +G+KR++++ A  +A        + +
Sbjct: 309 PDEIVLGYELNQKELLEELLHEFAGKKVYITCPVRGKKRELLKMAKKDAEYLKGVIKTKD 368

Query: 360 ISHQMILKDFTKK----------------FALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
            + +   K+ + K                F        +E YD S+I G   V  MVV  
Sbjct: 369 EASRERKKELSYKLGRILNEMNGGRYEYGFNDAGGEYTVEAYDISNINGIDNVAGMVVFT 428

Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463
                K++YRKF +    ++ QDD   MR VL RRF++  +               F   
Sbjct: 429 GFAPEKSRYRKFKIKS--IEGQDDYGSMREVLFRRFTRYKEG-----------APGFSDL 475

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PD++ +DGG+G ++AA  VLK L++E  I +I +AK  K       + V     +     
Sbjct: 476 PDIIFMDGGRGHVNAALDVLKYLDLE--IPVIGMAKDDKHRTKELVYKVGDKFKVYPLAG 533

Query: 524 DPILYF--IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
                   + R+++E HR+AI+ H   R +    S L+ I G+GP ++  LL+ +GT++ 
Sbjct: 534 SDNFMLAYVGRIQEEVHRYAISYHISLRDRSMTKSILENIEGVGPKKRAALLKKWGTIEA 593

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHK 609
           I ++S E L + EGI+ K+A KI   F  
Sbjct: 594 IEKASAEELEATEGINLKLALKIKEFFKN 622


>gi|58696739|ref|ZP_00372282.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58698039|ref|ZP_00372963.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225629953|ref|YP_002726744.1| excinuclease ABC, subunit C [Wolbachia sp. wRi]
 gi|254764952|sp|C0R5B1|UVRC_WOLWR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|58535396|gb|EAL59471.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58537076|gb|EAL60200.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225591934|gb|ACN94953.1| excinuclease ABC, subunit C [Wolbachia sp. wRi]
          Length = 605

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 239/612 (39%), Positives = 351/612 (57%), Gaps = 26/612 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +  P+  GVY+M+    +VLYVGKA NL+ R+  Y+   N + RI  M+SQ+  +   
Sbjct: 8   QIKSSPQSCGVYKMVGDKNKVLYVGKAKNLKSRLSDYLQFENLSERIRVMLSQVIKVEIF 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGS 120
           +T  E+EALLLEA +IK LKP +NI+L+D K +PYI I+ KH  P + K+R      +  
Sbjct: 68  ITENEIEALLLEAQLIKSLKPLYNIVLKDGKFYPYITIS-KHDYPRIAKYRGKFKKNEFH 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF S  AV++TI SLQ+ F LR C+D  F    RPC+ +QIKRCS PC  +I+ + Y
Sbjct: 127 YYGPFTSAAAVKQTILSLQKAFLLRVCSDQYFSSTKRPCIEYQIKRCSAPCVDKITKDDY 186

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238
            + V +A+  L G N  +KE++   M + + +E+YE A I+RDR+  L  IQ  +   S 
Sbjct: 187 CQSVKQARNTLLGRNKEVKEQLLFTMRKCSSEENYELAAIYRDRVKFLEQIQIQHTDFSF 246

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D FS+   ++LACI    F    N G+  +F +   + +N +ILS FL  FY    
Sbjct: 247 EKDADFFSIVREEDLACISVLSFRNKDNYGSTPYFAENCGDHSNDEILSTFLVNFYNSAN 306

Query: 299 CPE-NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
            P   I + +   +  ++E + +K     VK+   K  ++R +++    N+  S  QKL 
Sbjct: 307 IPPIQIYVPDSIVDKEIIEQALYKVAQKPVKVLHAKNKKERDLLKFVYDNSQHSLEQKLI 366

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              ++   L++ +K F LP+IPKRIE+YDNSHI G   +G MVV G+ GF+K++YRKF +
Sbjct: 367 DYRNNLEKLEELSKIFLLPNIPKRIEVYDNSHIFGNQQIGVMVVAGQEGFLKSEYRKFTI 426

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                 + DD  MMR VL RRFS  IK                   PD +++DGG G +S
Sbjct: 427 KEK--FSGDDYKMMREVLTRRFSGNIK----------------GIIPDFLLIDGGPGHVS 468

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
             Q VL+ LN+   +    +AKGP R+AG E+F++   E   L     ++ ++Q LR+EA
Sbjct: 469 IVQNVLEVLNI--NVPFACMAKGPDRNAGNERFYMLGREEFSLANDSKVMLYLQSLRNEA 526

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT+HRK+R K    S L +I GIG  RK+ L+  FG+VK IS++S   + +I GIS
Sbjct: 527 HRFAITSHRKKRDKQFIVSQLSKIPGIGNKRKKALMSYFGSVKNISKASLAEIQNIPGIS 586

Query: 597 KKIACKIYNHFH 608
           K +A  I  H +
Sbjct: 587 KGLAEVILKHVN 598


>gi|295099550|emb|CBK88639.1| Excinuclease ABC subunit C [Eubacterium cylindroides T2-87]
          Length = 598

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 174/615 (28%), Positives = 293/615 (47%), Gaps = 45/615 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G++LYVGKA  L+ R++SY H   H ++ T ++S I +  F VT +
Sbjct: 13  LPDQPGCYIMKDENGKILYVGKAKVLKNRVRSYFHG-VHDNKTTRLVSHIRDFEFIVTGS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE N+IK+  P FNI+  DDKS+PYI+I+       +   R     + +Y+GP+
Sbjct: 72  EKEALLLEINLIKKHTPPFNIMFMDDKSYPYIVISKDPCF-TVRVSRQVKNKKDTYYGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            S  +  + +  + + F +R C +       +PCL + + +C G C  EI ++   E   
Sbjct: 131 PSAQSAYEIVRLINQIFPIRKCKNMP----KQPCLYYHMHQCLGYCFKEIDNKVNEENRK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---M 242
             ++FL G    + + + + M QA+ +  +E A    D + A+ H+       +      
Sbjct: 187 AIRRFLDGDAKEIIDDLTKQMQQASDELRFERAKEIYDLIQAIEHVIEKQTIDFKDRASR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  Y +K     Q  F   G+                  +    ++ Q+Y     P  
Sbjct: 247 DVFGWYEDKGYISFQGFFIRKGKLLERTLSI--EPIYEDTMEAFVSYIVQYYQKNIVPSE 304

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           IL+ E      L E    +       + +PK+GEK+K+++  + NA  +H QK       
Sbjct: 305 ILVPEGTPVEVLEEALDTR-------VHIPKRGEKKKLVDLVIKNAKEAHDQKFQLVFRK 357

Query: 363 QMILKDFTKKF--ALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
              L+   +          + +E++DNSHI G   V  +VV       K+QYR + L   
Sbjct: 358 DKELEMANQHLSRIFHTKIETVEMFDNSHISGAYNVSGLVVFENGKPDKSQYRHYKLDG- 416

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
                 D   M+ V+ RR+ +L+K  +                PD++++DGG  Q++AA+
Sbjct: 417 ---YVSDLDSMKEVIYRRYFRLLKEGK--------------PMPDLLLVDGGALQINAAK 459

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            + + L+++ RI    + K  K S        +    + LN  DP+ + + R++DE HRF
Sbjct: 460 EIKEMLDLDLRI--AGLVKDDKHSTRA--LIDENLNEIPLNKEDPLFFLLTRMQDEVHRF 515

Query: 541 AITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI+ HRK R K    S LD ++GIG  RK+ LL+ F ++K I  +S E L+ +  + + +
Sbjct: 516 AISYHRKLRSKGMTQSMLDTVSGIGEKRKKQLLKHFKSMKQIRLASVEQLSEV--LPQDV 573

Query: 600 ACKIYNHFHKNTSHT 614
           A  +Y   H++   +
Sbjct: 574 ALSLYQRLHEDDKQS 588


>gi|288925944|ref|ZP_06419874.1| excinuclease ABC subunit C [Prevotella buccae D17]
 gi|288337368|gb|EFC75724.1| excinuclease ABC subunit C [Prevotella buccae D17]
          Length = 606

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 169/625 (27%), Positives = 303/625 (48%), Gaps = 48/625 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA NL++R+ SY H     ++   ++S+I +I +TV  
Sbjct: 10  NMPEKPGSYQFYDEDHTIIYVGKAKNLKRRVSSYFHKEVDRYKTKVLVSKIMDISYTVVN 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE  +IK+  PR+N+LL+D K++P I +T+    P ++K R  +   G+YFGP
Sbjct: 70  TEEDALLLENALIKKYNPRYNVLLKDGKTYPSICVTN-EYFPRIFKTRHINKKAGTYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           +  + ++   +  ++R +  R+C      + +   + +PCL + I  C  PC  + S E+
Sbjct: 129 YPHIGSMYAVLELIKRLYKPRTCRFPITKEGIAEGKYKPCLEYHIHNCGAPCINKQSYEE 188

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A++ L G    + + +   M +      +E A   + +   L+   + ++ + 
Sbjct: 189 YQENMRQAREILKGNTRQVSKWLYDQMMKNAELLHFEIAEELKKKYTLLNEFVSKSEVVS 248

Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +D   ++          A I       G    + T+  K   + ++ ++L   + +  
Sbjct: 249 HTIDDVDVFTIVDDSTNKNAFINYIHVKNGTINQSFTYEYKRKLDESDQELLITAIPEIR 308

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     E  L             +  VP++G+K+ +++ + +N  +    
Sbjct: 309 ERFGSHAKEVIVPFEMEWKL----------KDAEFFVPQRGDKKHLLDLSEMNGKQYKFD 358

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     ++K+  +K  LP +P  IE +DNS+I G  AV   +V       
Sbjct: 359 RLKQTEKLNPEQKQTRLMKELQEKLKLPKLPYHIECFDNSNISGTDAVAGCIVYKGMKPS 418

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           +  YRK+N+    V   DD A M+ V+ RR+S++ + +                 PD++I
Sbjct: 419 RKDYRKYNIKT--VVGPDDYASMQEVVRRRYSRMTEEQ--------------SPLPDLII 462

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V+ +  ++  I I  +AK  +     E  F    + + L+++  +  
Sbjct: 463 TDGGKGQMDVVRQVV-EGELKLNIPIAGLAKDDRHRT-NELLFGWPAQTVGLDVKSELFK 520

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HR+AIT HR +R K A +S LD+I GIGP  K +LL+   +VK I  +  +
Sbjct: 521 VLTQIQDEVHRYAITFHRDKRSKHALHSELDDIKGIGPKTKEMLLKKLKSVKQIKATDNQ 580

Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612
            L  + G SK     IY HFH N +
Sbjct: 581 QLIELLGPSKG--NLIYKHFHPNDT 603


>gi|295085940|emb|CBK67463.1| Excinuclease ABC subunit C [Bacteroides xylanisolvens XB1A]
          Length = 614

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 171/624 (27%), Positives = 302/624 (48%), Gaps = 47/624 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 79  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFKTRKVIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E+
Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G   ++   +   M     +  +E A   +++   +   ++ ++ + 
Sbjct: 198 YLKNIDEIKEILKGNTQDISRMLLEKMQTLAAEMKFEEAQKVKEKYLLIESYRSKSEVVS 257

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
             +    ++  +    N A I       G      TF  K     +  ++L+  + +   
Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L  I F           VP++G+K+K+++ +++N  +    +
Sbjct: 318 RYKSQSREIIVPFELDLELNNIVFT----------VPQRGDKKKLLDLSVLNVKQYKADR 367

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 368 LKQTEKLNPEQRSMRLMKEIQQELHLERPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I 
Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 471

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK   R    E  F    + + +  + P+   
Sbjct: 472 DGGKGQMEVVREVIED-ELNLAIPIAGLAK-DNRHRTSELLFGFPPQTIGIKQQSPLFRL 529

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAI+ HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDTIKGIGEKTKTALLKEFKSVKRIKETSFEE 589

Query: 589 LASIEGISKKIACKIYNHFHKNTS 612
           +A+I  I +  A  +       +S
Sbjct: 590 IAAI--IGEAKAKTVKEGLSNESS 611


>gi|304385120|ref|ZP_07367466.1| excision endonuclease subunit UvrC [Pediococcus acidilactici DSM
           20284]
 gi|304329314|gb|EFL96534.1| excision endonuclease subunit UvrC [Pediococcus acidilactici DSM
           20284]
          Length = 594

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 183/607 (30%), Positives = 294/607 (48%), Gaps = 41/607 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG YQM ++  +++YVGKA NL+ R++SY   ++H  +   ++S+I +  + VT +
Sbjct: 13  LPDKPGCYQMKNLNSQIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIADFDYIVTAS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +IK+ +P +NI L+    +PYI IT+  K P +    +     G YFGP+
Sbjct: 72  DKEAFLLEITLIKKYQPYYNIKLKKGTGYPYIKITN-EKDPRMQIVSNVRRDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ L++ + LR C         RPCL + + +C G C  E+  E+Y + + 
Sbjct: 131 PNVYAAEETLHFLEKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKEVPKEEYDQQIA 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K FL G    +K+ +   M QA+   ++E A   RD++  +         I N     
Sbjct: 187 KIKSFLRGNVAKVKKSLQAKMQQASEAMEFERAAEIRDQIHYIEVTVEKQRIISNDRTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +            S+  +             +K  P  
Sbjct: 247 DLFNFYLDKGWLSIQIFFIRQSRLMKREKRLFPIASDVADEFSSFILQFYNNKNKVLPNE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           IL+ E  +   + EI         V +  PK+GEKR ++  A  NA              
Sbjct: 307 ILVPEGLDNQIISEIL-------GVPVRTPKRGEKRDLMNLARENAQITLEEKFRLLELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +K+ T    +P    RIE +D+SHI G   V  MVV  +    K  YRKF L+
Sbjct: 360 ESKTVGAMKEITDALGIP-EGHRIEAFDHSHIQGADLVSAMVVFTDGKPDKKMYRKFKLN 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ A  R V+ RR+ +L+K  ++L              PD++++DGG  QL+A
Sbjct: 419 T--VDHADEAASTREVIRRRYVRLLKEHQSL--------------PDLILMDGGDVQLNA 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  + K  K     +  F  + + + L+ +    Y +QR++DE H
Sbjct: 463 ARDVLVN-ELSLHIPVAGMVKNDKHKTA-DLIFGDQDQRVQLDPKSQGFYLVQRIQDEVH 520

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+   K +  S LD ING+GP  +  LL+ FG++  I  +  E + ++ GIS 
Sbjct: 521 RFAITFHRQMHAKNSLSSQLDSINGVGPKTRNKLLREFGSLNKIRDAKIEEIEAL-GISA 579

Query: 598 KIACKIY 604
           K+A  I 
Sbjct: 580 KVAKTIK 586


>gi|28378731|ref|NP_785623.1| excinuclease ABC subunit C [Lactobacillus plantarum WCFS1]
 gi|254556934|ref|YP_003063351.1| excinuclease ABC subunit C [Lactobacillus plantarum JDM1]
 gi|300768249|ref|ZP_07078154.1| excision endonuclease subunit UvrC [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|38258748|sp|Q88VE9|UVRC_LACPL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|28271568|emb|CAD64473.1| excinuclease ABC, subunit C [Lactobacillus plantarum WCFS1]
 gi|254045861|gb|ACT62654.1| excinuclease ABC subunit C [Lactobacillus plantarum JDM1]
 gi|300494313|gb|EFK29476.1| excision endonuclease subunit UvrC [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 604

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 173/608 (28%), Positives = 291/608 (47%), Gaps = 43/608 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M ++  +++YVGKA NL+ R++SY   ++HT +   ++S+I +  F VT T
Sbjct: 13  LPDLPGCYLMKNLNSQIIYVGKAKNLKNRVRSYF-KSSHTGKTARLVSEIADFEFIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +I++ +P FNI L+    +PYI IT+  + P +    D     G YFGP+
Sbjct: 72  DKEAFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQILIVSDVRKDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T+N +Q+ + LR C         RPCL + + +C G C   +   +Y   + 
Sbjct: 131 PNVYAAQETVNFIQKVYPLRRCHGFQ----KRPCLYYHMGQCLGACFKTVPVAEYDAQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
             K FL+G    +K+++ + M+QA    ++E A   RD+L  +         I N     
Sbjct: 187 RIKSFLNGHVETVKKQLTKRMDQAAADLEFERAAELRDQLNYIEMTVEKQKIISNDNTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +            S +               +   P  
Sbjct: 247 DLFNFYLDKGWLSIQVFFIRQARLMKREKRLFPVVSTAPEEMTSFILQFYNRKNNVLPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           +L+    ++  L +I           +  P++G+K+ +++ A  NA              
Sbjct: 307 VLVPNGLDKQVLSDILGI-------PVRTPQRGQKKDLLDMAQKNARIVLEEKFRLLELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++ T    +P    +IE +D+SHI G   V  MVV  +    K  YRK+ L 
Sbjct: 360 ERKTTGAMQEITDALGIPAG-HKIEAFDHSHIQGADLVSAMVVFTDGQPNKKLYRKYKLR 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ A  R V+ RR+++L+K    L              PD++++DGG+ QL A
Sbjct: 419 T--VDHADEAASTREVIRRRYTRLLKEHAAL--------------PDLILMDGGEIQLEA 462

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L +     + ++ K        +       + L L+ +    Y +QR++DE 
Sbjct: 463 AKDVLENELGIAT--PVAAMVKNDHHKTA-DLLASAGDQHLHLDPKSQGFYLLQRIQDEV 519

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K +  S LDEI G+GP  +  LL+ FG++  I+ +S E + S+ GI+
Sbjct: 520 HRFAITFHRQVHTKHSLSSRLDEIPGVGPKTRNKLLRKFGSMSKIAGASLEEIQSL-GIA 578

Query: 597 KKIACKIY 604
           K +A  + 
Sbjct: 579 KNVAQTVK 586


>gi|296111692|ref|YP_003622074.1| excinuclease ABC subunit C [Leuconostoc kimchii IMSNU 11154]
 gi|295833224|gb|ADG41105.1| excinuclease ABC subunit C [Leuconostoc kimchii IMSNU 11154]
          Length = 604

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 176/612 (28%), Positives = 291/612 (47%), Gaps = 42/612 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG YQM D  G+++YVGKA NL+ R++SY    +H  +   ++  I +  F VT +
Sbjct: 23  LPAEPGSYQMKDKNGKIIYVGKAKNLKNRVRSYF-KQDHDGKTAELVGNIVDFDFIVTNS 81

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +IK+ KP +NI L+    +PYI IT K + P +    +     G YFGP+
Sbjct: 82  DKEAFLLENELIKKYKPYYNIRLKYGTGYPYIKIT-KERNPKMALVNEVKKDGGFYFGPY 140

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T+  L++ + LR C         RPCL + + +C GPC  ++S E+Y E + 
Sbjct: 141 PNVYAAQETLRFLEKNYPLRRCNGYQ----GRPCLYYNMGQCLGPCWQDVSVEEYEEQIS 196

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
             K FL G   ++K+ IA  M  A    ++E A   RD+L  +                 
Sbjct: 197 RIKHFLDGNTASVKKAIAEKMQAAAATLEFERAADLRDQLKYIDETVESQRVLSKDTTPR 256

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    ++  F    +                   I          +   P  
Sbjct: 257 DLFNYYLDKGWMTVEVFFLRQARLIRQFKQTFSVVGSEDEEVINFIQQFYSQRNIQKPNE 316

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           +L+       +L EI         V + +P +GEKR +++ A  NA  +           
Sbjct: 317 VLVPHGINTKALSEIL-------AVPVRIPIRGEKRDLLDLAKKNAQIALEEKFRLMQLN 369

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++ T    +P    RIE +D+SH  G   V  MVV  +    K+ YRK+ + 
Sbjct: 370 EKKTTGAMREITAALNIPMG-HRIEAFDHSHTQGVEIVSAMVVFDDGVPNKDLYRKYKIK 428

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ +  + V+ RR+S+++K                   PD++++DGG+ QL A
Sbjct: 429 S--VTHADEWSETQEVIRRRYSRILKEG--------------GDMPDLILMDGGEIQLHA 472

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ V + +L +   + I ++ K  K     +    K G+ +VLN +    + IQR+++E 
Sbjct: 473 AKEVLVDELGLT-HVPIAAMVKNDKHKTA-DLIDGKTGDVVVLNKQSEGFFLIQRVQEEV 530

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAI  HR+ R K +  S LD I+G+GP  ++ LL+ FG++  I+ +S   L +I G++
Sbjct: 531 HRFAINFHRQLRSKNSLASRLDMIDGVGPKTRQKLLREFGSLPKIAAASITELQAI-GVN 589

Query: 597 KKIACKIYNHFH 608
           +K+A  I+    
Sbjct: 590 EKLARVIHMSLK 601


>gi|149277111|ref|ZP_01883253.1| excinuclease ABC, C subunit [Pedobacter sp. BAL39]
 gi|149231988|gb|EDM37365.1| excinuclease ABC, C subunit [Pedobacter sp. BAL39]
          Length = 600

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 181/623 (29%), Positives = 314/623 (50%), Gaps = 52/623 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVYQ  D+   ++Y+GKA +L+ R+ SY         +   ++S+I  I FT+ 
Sbjct: 12  DIPHKPGVYQYWDVEDTLIYIGKAKDLRNRVGSYFIQDRQLNGKTRVLVSKIRKITFTIV 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE++A LLE ++IK+ +PR+NI+L+DDK++P+I+I  K   P +Y  R+      +YFG
Sbjct: 72  DTEIDAWLLENSLIKKHQPRYNIMLKDDKTYPWIII-KKEPFPRVYWTRNRVKDGSTYFG 130

Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+ASV  +   ++ ++ T+ LR+C       ++   + + CL +QI  C GPC    S  
Sbjct: 131 PYASVGMMHTILDLIKETYTLRTCNLPLTQKNITDGKFKVCLEYQIGNCKGPCQAYQSEP 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            Y + + E K+ L+G   N+ + + + +  A  + ++E A  ++ +L  L   Q+ +   
Sbjct: 191 DYDKNIEEIKEILNGKISNVIKDVKQVIRDAAAELNFEYAHQYQKKLLVLEKYQSKSTVV 250

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                 +D  S+  ++  A +       G    T T  +K   + T+ ++L+  + +F T
Sbjct: 251 SSAITNIDVVSIASDERYAFVNYLKVMNGSIIQTQTIEIKKRLDETDEELLTLAITEFRT 310

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------ 348
                 + +++  +                  ++ TVPK GEK+K++E +  N       
Sbjct: 311 KFNSTSKEVIVPFDIVLED-----------SNLRFTVPKLGEKKKLLELSQKNVLFFKKE 359

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
             +  +KL+ ++  + IL    K   +  +P  IE +DNS+  G   V  +VV  +    
Sbjct: 360 KLNQYEKLNPDLRTERILGQLQKDLGMAKLPVHIECFDNSNFQGKYPVSAIVVFKDAKPS 419

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YR FN+    V+  +D A M   + RR+ ++++ E+ L              P ++I
Sbjct: 420 KKDYRHFNVKT--VEGPNDFATMEEAVFRRYKRMLEEEDTL--------------PQLII 463

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQLS+A   LKKL + N++ ++ IAK  +     E FF      L L+ +   L 
Sbjct: 464 IDGGKGQLSSAMSSLKKLGLANKVMVVGIAKRLE-----ELFFPNDPYPLYLDKKSESLK 518

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            IQ+LRDEAHRF IT HRK+R +    + L++I GIG      LL+ F +VK I  ++  
Sbjct: 519 LIQQLRDEAHRFGITFHRKKRDQGTLKTELEQIEGIGKTTADKLLRQFKSVKKIKAATEP 578

Query: 588 TLASIEGISKKIACKIYNHFHKN 610
            L ++  ++K     +  +F KN
Sbjct: 579 ELQTV--LNKAQVKTLLEYFEKN 599


>gi|301300877|ref|ZP_07207049.1| excinuclease ABC, C subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851476|gb|EFK79188.1| excinuclease ABC, C subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 592

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 179/618 (28%), Positives = 291/618 (47%), Gaps = 42/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M DI  R++YVGKA NL+ R++SY   ++H  +   ++S+I +    
Sbjct: 9   KLKLLPDLPGCYMMKDINSRIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIRDFETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T T+ EA LLE  +I++ KP +NI L+    +PYI IT   K P L          G Y
Sbjct: 68  ITSTDKEAFLLEITLIQKHKPYYNIKLKRGTGYPYIKIT-HEKDPQLKIVSQVKKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A  +T+  LQ+ + LR C         RPCL + + +C G C  E+   +Y 
Sbjct: 127 FGPYPNVYAATETLQLLQKVYPLRRCNGYQ----KRPCLYYHMGQCLGACFKEVPQSEYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + + + K FL+G    +K+++ + M  A+   ++E A   RD++  +         I N 
Sbjct: 183 KQIKKIKSFLNGNVSKIKKELEQKMETASENLEFERAAEIRDQIHYVEMTVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y NK    +Q       +                              ++ 
Sbjct: 243 NTPRDLFAFYMNKGWLSLQIFSIRQARLMKREKRLFPCIDMPEAELESFILQFYNQKNRI 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ IL+    ++ +L EI         + +  P++G+KR ++E A  NA          
Sbjct: 303 LPKEILVPSGMDKETLSEIL-------GIPVKTPQRGQKRDLLEMAQKNAKLVLEEKFRL 355

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               E      + + T    LP    RIE +D+SH+ G   V  MV   +    K +YRK
Sbjct: 356 LELDERKTTGAMNEITDALGLP-NGHRIEAFDHSHLQGEDLVSAMVCFIDGKPEKTEYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + L   +V   D+ A  R V+ RR+S+L+K + NL              PD++++DG   
Sbjct: 415 YKLK--NVDHADEAASTREVIYRRYSRLLKEKANL--------------PDLILMDGASV 458

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++AA  VL    +   I +  + K  +          +  E + L+ +    Y +QR++
Sbjct: 459 QINAAVDVLHN-QLGIDIPVAGMVKNDRHKTAD--LMTENDEKIGLDPKSEGFYLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K +  S L+ I G+GP  +  LL+++G++K IS +S E L S+ 
Sbjct: 516 DEVHRFAITFHRQVRSKNSLASRLERIQGVGPKTRIKLLRNYGSLKNISAASVEDLESL- 574

Query: 594 GISKKIACKIYNHFHKNT 611
           GISKK+A  I       +
Sbjct: 575 GISKKVAQTIKLSLKNQS 592


>gi|194468445|ref|ZP_03074431.1| excinuclease ABC, C subunit [Lactobacillus reuteri 100-23]
 gi|194453298|gb|EDX42196.1| excinuclease ABC, C subunit [Lactobacillus reuteri 100-23]
          Length = 603

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 181/615 (29%), Positives = 289/615 (46%), Gaps = 42/615 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +I  +++YVGKA NL+ R++SY   ++HT ++  M+S++ +    VT T
Sbjct: 13  LPDKPGCYLMKNINDQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             E+ LLE  +I++ +P FNI L+    +PYI IT+  + P +          G YFGP+
Sbjct: 72  NKESFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQIKIVSKIKKDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ +Q+ + LR C         RPCL + + +C G C  E+    Y E + 
Sbjct: 131 PNVYAAEETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKEVPKSDYEEQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K FLSG    +K ++ + M  A    ++E A   RD+L  +         I N     
Sbjct: 187 KIKSFLSGNTATVKRQLTKKMQLAAENMEFERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +              +               +   P  
Sbjct: 247 DLFNFYMDKGWLSIQIFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           ILL +      + EI         V +  P +GEKR ++  A  NA              
Sbjct: 307 ILLPKGLPNKEISEIL-------GVPVRTPVRGEKRNLLAMAHENAQLSLDEKFRLLEMD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      +K+ T    LP    RIE +D+SHI G   V  MVV       KN YRK+ L 
Sbjct: 360 QSKTTGAMKEITDALGLP-EGHRIEAFDHSHIQGADPVSAMVVFINGEPAKNFYRKYKLK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   D+ A  R V+ RR+S+L+K  +                PD++ +DGG+ Q+ A
Sbjct: 419 T-VINHADEAASTREVIRRRYSRLLKENK--------------PMPDMIFMDGGEIQMDA 463

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ +L+ +L ++  I ++ + K  K     +  F      + LN R    Y +QR++DE 
Sbjct: 464 AKDILENELGLD--IPVVGMVKNDKHQTA-DLLFGDDDHHINLNPRSQGFYLVQRIQDEV 520

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K +  S LDEI G+GP  +  LL+ +G++  I+++S + + S+ GI+
Sbjct: 521 HRFAITFHRRVHTKHSLSSRLDEIKGVGPRTRTKLLKKYGSITKIAQASVDEIHSL-GIN 579

Query: 597 KKIACKIYNHFHKNT 611
           +  A  I     KN 
Sbjct: 580 RPTAQLIKVSLQKNA 594


>gi|148543889|ref|YP_001271259.1| excinuclease ABC subunit C [Lactobacillus reuteri DSM 20016]
 gi|184153289|ref|YP_001841630.1| excinuclease ABC subunit C [Lactobacillus reuteri JCM 1112]
 gi|227364797|ref|ZP_03848845.1| excinuclease ABC subunit C [Lactobacillus reuteri MM2-3]
 gi|325682578|ref|ZP_08162095.1| excinuclease ABC subunit C [Lactobacillus reuteri MM4-1A]
 gi|189038063|sp|A5VJ98|UVRC_LACRD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229558038|sp|B2G6R8|UVRC_LACRJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|148530923|gb|ABQ82922.1| Excinuclease ABC subunit C [Lactobacillus reuteri DSM 20016]
 gi|183224633|dbj|BAG25150.1| excinuclease ABC subunit C [Lactobacillus reuteri JCM 1112]
 gi|227070141|gb|EEI08516.1| excinuclease ABC subunit C [Lactobacillus reuteri MM2-3]
 gi|324978417|gb|EGC15367.1| excinuclease ABC subunit C [Lactobacillus reuteri MM4-1A]
          Length = 603

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 183/615 (29%), Positives = 290/615 (47%), Gaps = 42/615 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +I  +++YVGKA NL+ R++SY   ++HT ++  M+S++ +    VT T
Sbjct: 13  LPDKPGCYLMKNINDQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             E+ LLE  +I++ +P FNI L+    +PYI IT+  + P +          G YFGP+
Sbjct: 72  NKESFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQIKIVSKIKKDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ +Q+ + LR C         RPCL + + +C G C  E+    Y E + 
Sbjct: 131 PNVYAAEETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKEVPKSDYEEQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K FLSG    +K ++ + M +A    ++E A   RD+L  +         I N     
Sbjct: 187 KIKSFLSGNTATVKRQLTKKMQRAAENMEFERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +              +               +   P  
Sbjct: 247 DLFNFYMDKGWLSIQIFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPHE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           ILL +      + EI         V +  P +GEKR ++  A  NA              
Sbjct: 307 ILLPKGLPNKEISEIL-------GVPVRTPVRGEKRDLLAMAHENAQLSLDEKFRLLEMD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      +K+ T    LP    RIE +D+SHI G   V  MVV       KN YRK+ L 
Sbjct: 360 QSKTTGAMKEITDALGLP-EGHRIEAFDHSHIQGADPVSAMVVFINGEPAKNFYRKYKLK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   D+ A  R V+ RR+S+L+K  +                PD++ +DGG+ Q+ A
Sbjct: 419 T-VINHADEAASTREVIRRRYSRLLKENK--------------PMPDMIFMDGGEIQMDA 463

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L +E  I ++ + K  K     +  F      + LN R    Y +QR++DE 
Sbjct: 464 AKDVLENELGLE--IPVVGMVKNDKHQTA-DLLFGDDDHHINLNPRSQGFYLVQRIQDEV 520

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K +  S LDEI G+GP  +  LL+ +G++  I+++S + + S+ GI+
Sbjct: 521 HRFAITFHRRVHTKHSLSSRLDEIKGVGPRTRTKLLKKYGSITKIAQASVDEIHSL-GIN 579

Query: 597 KKIACKIYNHFHKNT 611
           +  A  I     KN 
Sbjct: 580 RPTAQLIKVSLQKNA 594


>gi|237716854|ref|ZP_04547335.1| excinuclease ABC subunit C [Bacteroides sp. D1]
 gi|262405625|ref|ZP_06082175.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_22]
 gi|294644430|ref|ZP_06722193.1| excinuclease ABC, C subunit [Bacteroides ovatus SD CC 2a]
 gi|294810424|ref|ZP_06769081.1| excinuclease ABC, C subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|229442837|gb|EEO48628.1| excinuclease ABC subunit C [Bacteroides sp. D1]
 gi|262356500|gb|EEZ05590.1| excinuclease ABC, C subunit [Bacteroides sp. 2_1_22]
 gi|292640265|gb|EFF58520.1| excinuclease ABC, C subunit [Bacteroides ovatus SD CC 2a]
 gi|294442389|gb|EFG11199.1| excinuclease ABC, C subunit [Bacteroides xylanisolvens SD CC 1b]
          Length = 614

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 170/624 (27%), Positives = 301/624 (48%), Gaps = 47/624 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ L+  G ++YVGKA NL+KR+ SY    +   +   ++S+I +IR+ V  
Sbjct: 19  NLPEKPGIYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ KPR+N+LL+DDK++P I + +    P ++K R       SY+GP
Sbjct: 79  TEEDALLLENNLIKKYKPRYNVLLKDDKTYPSICVQN-EYFPRIFKTRKVIRNGSSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ ++  + LR+C      +++   +   CL + IK C+GPC G  S E+
Sbjct: 138 YSHIPSMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFNVCLEYHIKNCAGPCIGLQSQEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G   ++   +   M     +  +E A   +++   +   ++ ++ + 
Sbjct: 198 YLKNIDEIKEILKGNTQDISRMLLEKMQTLAAEMKFEEAQKVKEKYLLIESYRSKSEVVS 257

Query: 240 NRMDCFSLYHNK----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
             +    ++  +    N A I       G      TF  K     +  ++L+  + +   
Sbjct: 258 AVLHNIDVFSIEEDESNSAFINYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRE 317

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     +  L            V  TVP++G+K+K+++ +++N  +    +
Sbjct: 318 RYKSQSREIIVPFELDLELN----------NVVFTVPQRGDKKKLLDLSVLNVKQYKADR 367

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ++K+  ++  L   P +IE +DNS+I G  AV   VV  +    K
Sbjct: 368 LKQAEKLNPEQRSMRLMKEIQQELHLERPPLQIECFDNSNIQGSDAVAACVVFKKAKPSK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M+ V+ RR+ + I+                   PD++I 
Sbjct: 428 KDYRKYNIKT--VVGPDDYASMKEVVRRRYQRAIEEN--------------SPLPDLIIT 471

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   + V++   +   I I  +AK   R    E       + + +  + P+   
Sbjct: 472 DGGKGQMEVVREVIED-ELNLAIPIAGLAK-DNRHRTSELLLGFPPQTIGIKQQSPLFRL 529

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + +++DE HRFAI+ HR +R K    S LD I GIG   K  LL+ F +VK I  +S E 
Sbjct: 530 LTQIQDEVHRFAISFHRDKRSKRQVASALDTIKGIGEKTKTALLKEFKSVKRIKETSFEE 589

Query: 589 LASIEGISKKIACKIYNHFHKNTS 612
           +A+I  I +  A  +       +S
Sbjct: 590 IAAI--IGEAKAKTVKEGLSNESS 611


>gi|326692442|ref|ZP_08229447.1| excinuclease ABC subunit C [Leuconostoc argentinum KCTC 3773]
          Length = 620

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 170/612 (27%), Positives = 289/612 (47%), Gaps = 42/612 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG YQM D +G+++YVGKA NL+ R++SY    +HT +   ++  I +  + VT +
Sbjct: 39  LPAEPGSYQMKDQSGKIIYVGKAKNLKNRVRSYF-KQDHTGKTAELVQNIVDFDYIVTNS 97

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +IK+ KP +NI L+    +PYI IT K + P +    +     G YFGP+
Sbjct: 98  DKEAFLLENELIKKYKPYYNIRLKYGTGYPYIKIT-KERDPKMAMVNEVKKDGGFYFGPY 156

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T+  L++ + LR C         RPCL + + +C G C  E+   +Y   V 
Sbjct: 157 PNVFAAQETLRFLEKNYPLRRCNGFQ----GRPCLYYNMGQCLGACWHEVPEAEYAAQVD 212

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
           + K+FL G    +K+ IA  M  A     +E A   RD+L  +                 
Sbjct: 213 QIKRFLDGDTAAVKKAIAEKMTAAAEALAFEQAADLRDQLKYIDETVESQRVLSKDTTPR 272

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ + +K    ++  F    +              +    +          +   P  
Sbjct: 273 DLFNYHLDKGWMTVEVFFLRQARLIRQFKQTFSVVGSADEEMMNFIQQFYAQRNIQKPNE 332

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           +L+ +  +  +L E          V + +P +GEKR +++ A  NA  +           
Sbjct: 333 VLVPKGIDTAALTEAL-------GVPVRIPVRGEKRDLLDLAQKNARIALEEKFRLMQLN 385

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++ T    +P    RIE +D+SH  G   V  MVV  +    K+ YRK+ + 
Sbjct: 386 EKKTTGAMREITDALHIPMG-HRIEAFDHSHTQGVEIVSAMVVFEDGVPNKDLYRKYKIK 444

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ A  + V+ RR+S+L+K                   PD++++DGGK QL+A
Sbjct: 445 S--VDHADEWAETQEVIRRRYSRLLKEG--------------GEMPDLILMDGGKIQLNA 488

Query: 479 AQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ V + +L +   + I ++ K  K     +      G+ +  + +    + IQR+++E 
Sbjct: 489 AKEVLVDELGLT-HVPIAAMVKNDKHKTA-DLIDGHTGKVVTFDKQSEGFFLIQRVQEEV 546

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFA++ HR+ R K    S LD I+G+GP  ++ LL+ FG++  I+ +S   L +I GI+
Sbjct: 547 HRFAVSFHRQLRSKNTLASRLDRIDGVGPKTRQKLLREFGSLPKIAAASIADLQAI-GIN 605

Query: 597 KKIACKIYNHFH 608
           +K+A  I+    
Sbjct: 606 EKLARVIHLSLQ 617


>gi|99036056|ref|ZP_01315092.1| hypothetical protein Wendoof_01000062 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 605

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 235/612 (38%), Positives = 350/612 (57%), Gaps = 26/612 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +  P+  GVY+M+    +VLYVGKA NL+ R+  Y+   N + RI  M+ Q+  +   
Sbjct: 8   QIKSSPQSCGVYKMVGDKNKVLYVGKAKNLKSRLSDYLQFENLSERIRVMLLQVIKVEIF 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGS 120
           +T  E+EALLLEA +IK LKP +NI+L+D K +PYI I+ KH  P + K+R      +  
Sbjct: 68  ITENEIEALLLEAQLIKSLKPLYNIVLKDGKFYPYITIS-KHDYPRIAKYRGKFKKNEFH 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF S  AV++TI SLQ+ F LR C+D  F    RPC+ +QIKRCS PC  +I+ + Y
Sbjct: 127 YYGPFTSAAAVKQTILSLQKAFLLRVCSDQYFSSTKRPCIEYQIKRCSAPCINKITKDDY 186

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238
            + V +A+  L G N  +KE++   M + + +E+YE A I+RDR+  L  IQ  +   S 
Sbjct: 187 CQSVKQARNTLLGRNKEVKEQLLFTMRKCSSEENYELAAIYRDRVKFLEQIQIQHTDFSF 246

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D FS+   ++LACI    F    N G+  +F +   + +N +ILS FL  FY    
Sbjct: 247 EKDADFFSIVREEDLACISVLSFRNKDNYGSTPYFAENCGDHSNDEILSTFLVNFYNSAN 306

Query: 299 CPE-NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
            P   I + +   +  ++E + +K     VK+   K  ++R +++    N+  S  QKL 
Sbjct: 307 IPPIQIYVPDSIVDKEIIEQALYKVAQKPVKVLHAKNKKERDLLKFVYDNSQHSLEQKLI 366

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              ++   L++ +K F LP+IPKRIE+YDNSHI G   +G M+V G+ GF+K++YRKF +
Sbjct: 367 DYRNNLEKLEELSKIFLLPNIPKRIEVYDNSHISGSQQIGVMIVAGQEGFLKSEYRKFTI 426

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                 + DD  MMR VL RRFS  IK                   PD +++DGG G +S
Sbjct: 427 KEK--FSGDDYKMMREVLTRRFSGNIK----------------GIIPDFLLIDGGPGHVS 468

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
             Q VL+ LN+   +    +AKGP R+AG E+F++   E   L     ++ ++Q LR+EA
Sbjct: 469 IVQNVLEVLNI--NVPFACMAKGPDRNAGNERFYMLGREEFSLANDSKVMLYLQSLRNEA 526

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT+HRK+R K    S L +I GIG  RK+ L+  FG+VK IS++S   + ++ GIS
Sbjct: 527 HRFAITSHRKKRDKQFIVSQLSKIPGIGNKRKKALMSYFGSVKNISKASLAEIQNVPGIS 586

Query: 597 KKIACKIYNHFH 608
           K +A  I  + +
Sbjct: 587 KGLAEVILKYVN 598


>gi|330752388|emb|CBL87340.1| UvrABC system protein C [uncultured Sphingobacteria bacterium]
          Length = 590

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 185/612 (30%), Positives = 298/612 (48%), Gaps = 46/612 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D   ++LYVGKA  L+KR++SY      + R+  ++ +I +I FT   +
Sbjct: 16  IPNKPGVYEFYDANQKILYVGKAKKLKKRVQSYFQKEQTSARLKLLVKKITSIEFTTVES 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE N+IK  +P++NI L+DDKS+PYI+I +   IP LY  R        YFGP+
Sbjct: 76  DQEAFLLENNLIKEHQPKYNIQLKDDKSYPYIVIRN-EPIPRLYFTRRKVQDGSEYFGPY 134

Query: 126 ASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
             V  V   +N  +    LR+C      D + + + + CL + I  C  PCTGE S+ +Y
Sbjct: 135 TGVKHVRAIVNLAKELHPLRTCKLDLSPDKISQGKYKVCLEYHIGNCLAPCTGEQSASEY 194

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238
            E +   +K L G   N+ + +    NQAT + ++E A  ++ ++  +   +  +     
Sbjct: 195 NEGIDTIRKILEGKTSNIIDALIERRNQATQELNFEQAHYYQKKIEKIQEFRMPSLVENL 254

Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
              + D + + H ++ + I            +    +       + ++L   +R+F   +
Sbjct: 255 GIEQADVYQILHKEHGSAIHHIKIREYSIIFSTINQVIPKLHEDDEELLLQAIRKFTMAQ 314

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
           P      +    +                  + VP++GEK +I+     N      +  +
Sbjct: 315 PLEAIPPIIAPIDLD-----------FPFAPVNVPERGEKNRILLMMKKNLMEHKFKSKT 363

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                   L+   K   L  +PK IE +DNS+I G + V   VV       K+ YR FN+
Sbjct: 364 KVNQDH--LEQIQKDLRLTSLPKHIECFDNSNIQGSNPVASCVVFINGRPAKSAYRHFNV 421

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V   DD A MR +++RR++  IK  E L              PD++++DGGKGQL+
Sbjct: 422 KT--VDGPDDYASMREIVKRRYTGQIKKGEAL--------------PDLIVIDGGKGQLN 465

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA   LK++ +   + +I IAK  +     E F+      L+LN R P L  IQ++R+EA
Sbjct: 466 AAVEALKEVGIYQEVAVIGIAKQLE-----ELFYPNDPLPLMLNKRSPALKLIQQIRNEA 520

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HRK+R +    + L+ I+GIG      LL+SFG+V+ I  ++ E +A +  I 
Sbjct: 521 HRFAITFHRKKRSQHFTRTSLEVIDGIGEKTAIQLLRSFGSVEAIRNATMEDIALV--IG 578

Query: 597 KKIACKIYNHFH 608
           +K A  I    H
Sbjct: 579 QKKAQLIKAGLH 590


>gi|227891094|ref|ZP_04008899.1| excinuclease ABC subunit C [Lactobacillus salivarius ATCC 11741]
 gi|227866968|gb|EEJ74389.1| excinuclease ABC subunit C [Lactobacillus salivarius ATCC 11741]
          Length = 592

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 179/618 (28%), Positives = 291/618 (47%), Gaps = 42/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M DI  R++YVGKA NL+ R++SY   ++H  +   ++S+I +    
Sbjct: 9   KLKLLPDLPGCYMMKDINSRIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIRDFETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T T+ EA LLE  +I++ KP +NI L+    +PYI IT   K P L          G Y
Sbjct: 68  ITSTDKEAFLLEITLIQKHKPYYNIKLKRGTGYPYIKIT-HEKDPQLKIVSQVKKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A  +T+  LQ+ + LR C         RPCL + + +C G C  E+   +Y 
Sbjct: 127 FGPYPNVYAATETLQLLQKVYPLRRCNGYQ----KRPCLYYHMGQCLGACFKEVPQSEYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + + + K FL+G    +K+++ + M  A+   ++E A   RD++  +         I N 
Sbjct: 183 KQIKKIKSFLNGNVSKIKKELEQKMETASENLEFERAAEIRDQIHYVEMTVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y NK    +Q       +                              ++ 
Sbjct: 243 NTPRDLFAFYMNKGWLSLQIFSIRQARLMKREKRLFPCIDTPEAELESFILQFYNQKNRI 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ IL+    ++ +L EI         + +  P++G+KR ++E A  NA          
Sbjct: 303 LPKEILIPSGMDKETLSEIL-------GIPVKTPQRGQKRDLLEMAQKNAKLVLEEKFRL 355

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               E      + + T    LP    RIE +D+SH+ G   V  MV   +    K +YRK
Sbjct: 356 LELDERKTTGAMNEITDALGLP-NGHRIEAFDHSHLQGEDLVSAMVCFIDGRPEKTEYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + L   +V   D+ A  R V+ RR+S+L+K + NL              PD++++DG   
Sbjct: 415 YKLK--NVDHADEAASTREVIYRRYSRLLKEKANL--------------PDLILMDGASI 458

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++AA  VL    +   I +  + K  +          +  E + L+ +    Y +QR++
Sbjct: 459 QINAAVDVLHN-QLGIDIPVAGMVKNDRHKTAD--LMTENDEKIGLDPKSEGFYLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K +  S L+ I G+GP  +  LL+++G++K IS +S E L S+ 
Sbjct: 516 DEVHRFAITFHRQVRSKNSLASRLERIQGVGPKTRIKLLRNYGSLKNISAASVEDLESL- 574

Query: 594 GISKKIACKIYNHFHKNT 611
           GISKK+A  I       +
Sbjct: 575 GISKKVAQTIKLSLKNQS 592


>gi|300214767|gb|ADJ79183.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Lactobacillus salivarius CECT 5713]
          Length = 592

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 179/618 (28%), Positives = 291/618 (47%), Gaps = 42/618 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M DI  R++YVGKA NL+ R++SY   ++H  +   ++S+I +    
Sbjct: 9   KLKLLPDLPGCYMMKDINSRIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIRDFETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T T+ EA LLE  +I++ KP +NI L+    +PYI IT   K P L          G Y
Sbjct: 68  ITSTDKEAFLLEITLIQKHKPYYNIKLKRGTGYPYIKIT-HEKDPQLKIVSQVKKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A  +T+  LQ+ + LR C         RPCL + + +C G C  E+   +Y 
Sbjct: 127 FGPYPNVYAATETLQLLQKVYPLRRCNGYQ----KRPCLYYHMGQCLGACFKEVPQSEYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + + + K FL+G    +K+++ + M  A+   ++E A   RD++  +         I N 
Sbjct: 183 KQIKKIKSFLNGNVSKIKKELEQKMKTASENLEFERAAEIRDQIHYVEMTVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y NK    +Q       +                              ++ 
Sbjct: 243 NTPRDLFAFYMNKGWLSLQIFSIRQARLMKREKRLFPCIDTPEAELESFILQFYNQKNRI 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ IL+    ++ +L EI         + +  P++G+KR ++E A  NA          
Sbjct: 303 LPKEILVPSGMDKETLSEIL-------GIPVKTPQRGQKRDLLEMAQKNARLVLEEKFRL 355

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               E      + + T    LP    RIE +D+SH+ G   V  MV   +    K +YRK
Sbjct: 356 LELDERKTTGAMNEITDALGLP-NGHRIEAFDHSHLQGEDLVSAMVCFIDGKPEKTEYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + L   +V   D+ A  R V+ RR+S+L+K + NL              PD++++DG   
Sbjct: 415 YKLK--NVDHADEAASTREVIYRRYSRLLKEKANL--------------PDLILMDGASI 458

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++AA  VL    +   I +  + K  +          +  E + L+ +    Y +QR++
Sbjct: 459 QINAAVDVLHN-QLGIDIPVAGMVKNDRHKTAD--LMTENDEKIGLDPKSEGFYLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K +  S L+ I G+GP  +  LL+++G++K IS +S E L S+ 
Sbjct: 516 DEVHRFAITFHRQVRSKNSLASRLERIQGVGPKTRIKLLRNYGSLKNISAASVEDLESL- 574

Query: 594 GISKKIACKIYNHFHKNT 611
           GISKK+A  I       +
Sbjct: 575 GISKKVAQTIKLSLKNQS 592


>gi|315606902|ref|ZP_07881909.1| excision endonuclease subunit UvrC [Prevotella buccae ATCC 33574]
 gi|315251410|gb|EFU31392.1| excision endonuclease subunit UvrC [Prevotella buccae ATCC 33574]
          Length = 615

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 169/625 (27%), Positives = 303/625 (48%), Gaps = 48/625 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA NL++R+ SY H     ++   ++S+I +I +TV  
Sbjct: 19  NMPEKPGSYQFYDEDHTIIYVGKAKNLKRRVSSYFHKEVDRYKTKVLVSKIMDISYTVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE  +IK+  PR+N+LL+D K++P I +T+    P ++K R  +   G+YFGP
Sbjct: 79  TEEDALLLENALIKKYNPRYNVLLKDGKTYPSICVTN-EYFPRIFKTRHINKKAGTYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           +  + ++   +  ++R +  R+C      + +   + +PCL + I  C  PC  + S E+
Sbjct: 138 YPHIGSMYAVLELIKRLYKPRTCRFPITKEGIAEGKYKPCLEYHIHNCGAPCINKQSYEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A++ L G    + + +   M +      +E A   + +   L+   + ++ + 
Sbjct: 198 YQENMRQAREILKGNTRQVSKWLYDQMMKNAELLHFEIAEELKKKYTLLNEFVSKSEVVS 257

Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +D   ++          A I       G    + T+  K   + ++ ++L   + +  
Sbjct: 258 HTIDDVDVFTIVDDSTNKNAFINYIHVKNGTINQSFTYEYKRKLDESDQELLITAIPEIR 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     E  L             +  VP++G+K+ +++ + +N  +    
Sbjct: 318 ERFGSHAKEVIVPFEMEWKL----------KDAEFFVPQRGDKKHLLDLSEMNGKQYKFD 367

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     ++K+  +K  LP +P  IE +DNS+I G  AV   +V       
Sbjct: 368 RLKQAEKLNPEQKQTRLMKELQEKLKLPKLPYHIECFDNSNISGTDAVAGCIVYKGMKPS 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           +  YRK+N+    V   DD A M+ V+ RR+S++ + +                 PD++I
Sbjct: 428 RKDYRKYNIKT--VVGPDDYASMQEVVRRRYSRMTEEQ--------------SPLPDLII 471

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V+ +  ++  I I  +AK  +     E  F    + + L+++  +  
Sbjct: 472 TDGGKGQMDVVRQVV-EGELKLNIPIAGLAKDDRHRT-NELLFGWPAQTVGLDVKSELFK 529

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HR+AIT HR +R K A +S LD+I GIGP  K +LL+   +VK I  +  +
Sbjct: 530 VLTQIQDEVHRYAITFHRDKRSKHALHSELDDIKGIGPKTKEMLLKKLKSVKQIKATDNQ 589

Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612
            L  + G SK     IY HFH N +
Sbjct: 590 QLIELLGPSKG--NLIYKHFHPNDT 612


>gi|42520057|ref|NP_965972.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81652861|sp|Q73IK6|UVRC_WOLPM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|42409794|gb|AAS13906.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 605

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 236/612 (38%), Positives = 350/612 (57%), Gaps = 26/612 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +  P+  GVY+M+    +VLYVGKA NL+ R+  Y+   N + RI  M+ Q+  +   
Sbjct: 8   QIKSSPQSCGVYKMVGDKNKVLYVGKAKNLKSRLSDYLQFENLSERIRVMLLQVIKVEIF 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGS 120
           +T  E+EALLLEA +IK LKP +NI+L+D K +PYI I+ KH  P + K+R      +  
Sbjct: 68  ITENEIEALLLEAQLIKSLKPLYNIVLKDGKFYPYITIS-KHDYPRIAKYRGKFKKNEFH 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF S  AV++TI SLQ+ F LR C+D  F    RPC+ +QIKRCS PC  +I+ + Y
Sbjct: 127 YYGPFTSAAAVKQTILSLQKAFLLRVCSDQYFSSTKRPCIEYQIKRCSAPCINKITKDDY 186

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238
            + V +A+  L G N  +KE++   M + + +E+YE A I+RDR+  L  IQ  +   S 
Sbjct: 187 CQSVKQARNTLLGRNKEVKEQLLFTMRKCSSEENYELAAIYRDRVKFLEQIQIQHTDFSF 246

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D FS+   ++LACI    F    N G+  +F +   + +N +ILS FL  FY    
Sbjct: 247 EKDADFFSIVREEDLACISVLSFRNKDNYGSTPYFAENCGDHSNDEILSTFLVNFYNSAN 306

Query: 299 CPE-NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
            P   I + +   +  ++E + +K     VK+   K  ++R +++    N+  S  QKL 
Sbjct: 307 IPPIQIYVPDSIVDKEIIEQALYKVAQKPVKVLHAKNKKERDLLKFVYDNSQHSLEQKLI 366

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              ++   L++ +K F LP+IPKRIE+YDNSHI G   +G M+V G+ GF+K++YRKF +
Sbjct: 367 DYRNNLEKLEELSKIFLLPNIPKRIEVYDNSHISGSQQIGVMIVAGQEGFLKSEYRKFTI 426

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                 + DD  MMR VL RRFS  IK                   PD +++DGG G +S
Sbjct: 427 KEK--FSGDDYKMMREVLTRRFSGNIK----------------GIIPDFLLIDGGPGHVS 468

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
             Q VL+ LN+   +    +AKGP R+AG E+F++   E   L     ++ ++Q LR+EA
Sbjct: 469 IVQNVLEVLNI--NVPFACMAKGPDRNAGNERFYMLGREEFSLANDSKVMLYLQSLRNEA 526

Query: 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT+HRK+R K    S L +I GIG  RK+ L+  FG+VK ISR+S   + ++ GIS
Sbjct: 527 HRFAITSHRKKRDKQFIVSQLSKIPGIGNKRKKALMSYFGSVKNISRASLAEIQNVPGIS 586

Query: 597 KKIACKIYNHFH 608
           K +A  I  + +
Sbjct: 587 KGLAEVILKYVN 598


>gi|312623305|ref|YP_004024918.1| excinuclease ABC subunit C [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203772|gb|ADQ47099.1| excinuclease ABC, C subunit [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 593

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/608 (31%), Positives = 301/608 (49%), Gaps = 36/608 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVTC 64
           +P  PGVY M D  G V+YVGKA NL+ R++ Y  ++     +   M+ +I ++ + VT 
Sbjct: 10  LPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSQDMLPKTRLMVKKIKDLDYIVTD 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            EVEAL+LE N+IK  +P++N+LLRDDK++ YI IT+    P L   R        YFGP
Sbjct: 70  NEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSRYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           + S  +V++T+  L+  F LR+C         + RPCL F I++C G C G++S E+Y +
Sbjct: 129 YVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEEEYQK 188

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239
            V  A K LSG    + E++   M +      +E A   +++L++L  I      IY   
Sbjct: 189 LVERAVKVLSGKGDEIVEELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVIYADD 248

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KP 298
              D  +   +     I       G+      F LK + +         FL Q+Y D   
Sbjct: 249 RSEDVINFAKDHTHIAIVVLIIRNGKLINKEEFVLKAEED-----TFERFLEQYYADVVS 303

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I++  E E    +E    K YG+KVK+T+PKQGEK+++++ A  NA  S   +   
Sbjct: 304 LPKEIIIPHEIENVYNIEKMIEKLYGFKVKVTIPKQGEKKQLLDMAKKNAEISLANRQRV 363

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +  +   L        L +  ++IE YD S+I G   VG +VV  +  F K  YRKF + 
Sbjct: 364 DDVYAEALLTLKNILGLENEIEKIESYDISNIAGADNVGTLVVFEDGRFNKEFYRKFKIK 423

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               + QDD   ++ VL RRF+ L K                   PD++++DGG+ Q++A
Sbjct: 424 G--FEGQDDIRSVKEVLTRRFTNLEK---------------HGRIPDLILIDGGQNQVNA 466

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  VL  L     I +  + K  K         +  G+ + +     +   I  +++E H
Sbjct: 467 ALEVLNTLGFS--IPVAGMVKDDKHKTRD---LIYNGKEVGIQEYPLVYKLIYAIQEETH 521

Query: 539 RFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFA+  HR+ RKK    S LDEI GIG  RK  L ++FG++  + ++S E +     I  
Sbjct: 522 RFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAADIPY 581

Query: 598 KIACKIYN 605
           ++A KI  
Sbjct: 582 EVALKIKE 589


>gi|332638265|ref|ZP_08417128.1| excinuclease ABC subunit C [Weissella cibaria KACC 11862]
          Length = 597

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 168/613 (27%), Positives = 288/613 (46%), Gaps = 45/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG YQM DI G+++YVGKA NL+ R++SY   + HT +   ++  I +  F VT +
Sbjct: 13  LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSEHTGKTAQLVENIADFDFIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE  +I++ +P +NI L+    +PYI IT     P L    D       YFGP+
Sbjct: 72  EKESLLLEITLIQKYQPYYNIRLKRGTGYPYIKIT-HEADPKLELANDVKEDGAQYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T++ LQ+ + LR C         RPCL   + +C G C  ++   +Y++ + 
Sbjct: 131 PNVYAAQETLHFLQKVYPLRRCNGYQ----GRPCLYANMGQCLGACYRQVPFTEYLDQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           + + FL G    + + +   MN A+   ++E A   RD+L  +         I       
Sbjct: 187 KIQHFLDGDTKEVTKVLNEKMNTASENLEFERAADLRDQLKFIETTVEKQKIISKDGTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    +Q  F    +              +               +   P+ 
Sbjct: 247 DLFNFYMDKGWLSVQVFFVRQARLMKREKRTFAIVESAEEEMTSFILQFYNRKNAVLPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           IL+    ++  + ++         V +  P++GEKR +++ A  NA              
Sbjct: 307 ILVPAGVDKAMISDVLH-------VPVRTPQRGEKRDLLDLAEKNAKIVLDEKFRLMEMN 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++      +P    RIE +D+SH  G   V  MVV  +    KN+YR     
Sbjct: 360 ESKTSGAMQEIADALGIP-EIHRIEAFDHSHTQGAEMVSAMVVFEDGVPNKNKYR--KYK 416

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  D+ A    V+ RR+++L+K                   PD++++DGG  QL+A
Sbjct: 417 NKTVEHADERAETMEVIRRRYTRLLKEH--------------AEMPDLILMDGGVIQLNA 462

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDE 536
           A+ V++ +L ++  I + ++ K  +          ++GE  + L+ +    + +QR++DE
Sbjct: 463 AREVIEDELGLD--IPVAAMVKNDQHKTAD--LLREEGEPHVNLDPKSQGFFLLQRIQDE 518

Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            HRF IT HR+ R K++  S LDEI G+GP  ++ LL  FG++  I+ +S   L  + G+
Sbjct: 519 VHRFVITFHRQLRSKSSLGSKLDEIAGVGPKTRQKLLAKFGSLNKIANASIADLREV-GV 577

Query: 596 SKKIACKIYNHFH 608
           S+K+A  I     
Sbjct: 578 SEKVANAIKISLQ 590


>gi|227432501|ref|ZP_03914486.1| excinuclease ABC subunit C [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351728|gb|EEJ41969.1| excinuclease ABC subunit C [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 599

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 172/616 (27%), Positives = 291/616 (47%), Gaps = 40/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG YQM D  G+++YVGKA NL+ R++SY    +H  +   ++S+I +  F VT +
Sbjct: 16  LPSEPGSYQMKDQNGKIIYVGKAKNLKNRVRSYF-KQDHDGKTAELVSKIVDFDFIVTNS 74

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +IK+ KP +NI L+    +PYI IT K + P +    +     G YFGP+
Sbjct: 75  DKEAFLLENELIKKYKPYYNIRLKYGTGYPYIKIT-KERNPKMALVNEVKKDGGFYFGPY 133

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T+  LQ+ + LR C         RPCL + + +C G C  ++S ++Y + + 
Sbjct: 134 PNVYAAQETLRFLQKNYPLRRCNGPQ----GRPCLYYNMGQCLGACFRDVSVQEYNDQIS 189

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
             KKFL G    +K++I   M  A    ++E A   RD+L  +                 
Sbjct: 190 RIKKFLDGDTKIVKKQIVEKMQVAASSLEFERAADLRDQLKYIDETVESQRVLSKDTTPR 249

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    ++  F    +             E+               +   P  
Sbjct: 250 DLFNYYMDKGWMTVEVFFLRQARLIRQFKRTFSIVGEADEEVSSFIQQFYSQKNIQKPRE 309

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           +L+ +  +  +L  +        +V + +P +GEKR++++ A  NA              
Sbjct: 310 VLVPKGIDTKALSAVL-------EVPVRIPVRGEKRELLDLAAKNARIVLEEKFRLMQLN 362

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +K+ T    +P    RIE +D+SH  G   V  MVV  +    K +YRK+ + 
Sbjct: 363 ERKTTGAMKEITDALQIPMG-HRIEAFDHSHTQGVEIVSAMVVFDDGIPNKTEYRKYKIK 421

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  ++ A  + V+ RR+S+L++ +                +PD++++DGG+ QL A
Sbjct: 422 ST--DHANEWAETQEVIRRRYSRLLRED--------------GDFPDLILMDGGEIQLHA 465

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           AQ VL+       I I ++ K  K     +       + + L+ +    + IQR+++E H
Sbjct: 466 AQEVLEDELGLTNIPIAAMVKNDKHKTA-DLIDGVTNQIVTLDKQSEGFFLIQRVQEEVH 524

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI+ HR+ R K +  S LD I G+GP  ++ LL+ FG++  I+ +S   L  I GI++
Sbjct: 525 RFAISFHRQLRSKNSLASRLDTIQGVGPKTRQKLLREFGSLPKITAASVSDLVDI-GINE 583

Query: 598 KIACKIYNHFHKNTSH 613
           K+A  I+       + 
Sbjct: 584 KLARVIHLSLSAGDNS 599


>gi|259046646|ref|ZP_05737047.1| excinuclease ABC, C subunit [Granulicatella adiacens ATCC 49175]
 gi|259036811|gb|EEW38066.1| excinuclease ABC, C subunit [Granulicatella adiacens ATCC 49175]
          Length = 592

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 166/617 (26%), Positives = 292/617 (47%), Gaps = 41/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M +    ++Y+GKA NL+ R++SY      T +   ++S+I++  + 
Sbjct: 9   KLKNLPDLPGCYIMRNSNDEIIYIGKAKNLKNRVRSYFRGALDT-KTEKLVSEIHHFEYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT T  E+LLLE N+IK+ +P +NI L+    +PY+ IT   + P L          G Y
Sbjct: 68  VTKTNKESLLLEINLIKKYQPYYNIKLKQGTMYPYLKIT-SERDPQLVISHKVEKDGGIY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A   T   +Q+ + LR C     ++ TR C  + + +C G C  EIS ++Y 
Sbjct: 127 FGPYPNVTAATSTQQLIQKIYPLRKCG----KNETRACFYYHLGQCIGCCDHEISEDEYK 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             + + ++FL+G    +K+ + + M +A+ + ++E A+ +RD++  +       + +   
Sbjct: 183 TQIKKIQRFLNGDVKAIKDDLNQRMLEASERLEFEKAMDYRDQIHYIEATVEKQNIMSSD 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           +   D F+ + ++    IQ                     +  +  +          +  
Sbjct: 243 FTNRDVFAYFVDRGWISIQVFLLRQSTIIKREAAMFPIYDQIEDEVLSFIIQFYEDQNHI 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ IL+ +  +   L E    K          PK+G K+++++ A  N+  S  +K   
Sbjct: 303 LPKEILVPDALDIDLLSETLGVKAVS-------PKRGSKKRMLDLATQNSEISLLEKFRR 355

Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           E          L + ++   L  +   IE +D+S+I G + V  MVV  +    +  YRK
Sbjct: 356 EEQSQLKTLGALDELSQALGLEKLS-VIESFDHSNIQGTNPVSAMVVFRDGKPDRKHYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +    V    + A  + V+ RR+S+L++ + +L              PD+V++DGGK 
Sbjct: 415 FKVKT--VLGSHEFATTQEVIRRRYSRLLREKADL--------------PDLVLMDGGKI 458

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+ AA  VL+   +   I +  + K  K        + +K   + L+ +      IQR++
Sbjct: 459 QMKAAMEVLED-ELGLSIPVCGMVKNDKHKTAS-LIYGEKFTPIELDRKGQAFQLIQRVQ 516

Query: 535 DEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +E HRFAIT HR+ R K  +S  L+ I+G+GP  ++ LL  F T   I  +S E L  I 
Sbjct: 517 EEVHRFAITFHRQVRGKNTFSSRLELIDGVGPKTRKKLLSHFKTTTAIKNASVEELRKI- 575

Query: 594 GISKKIACKIYNHFHKN 610
           GIS+K+A  I   F   
Sbjct: 576 GISEKVASNIITTFQNE 592


>gi|308180923|ref|YP_003925051.1| excinuclease ABC subunit C [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046414|gb|ADN98957.1| excinuclease ABC subunit C [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 604

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 172/608 (28%), Positives = 290/608 (47%), Gaps = 43/608 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M ++  +++YVGKA NL+ R++SY   ++HT +   ++S+I +  F VT T
Sbjct: 13  LPDLPGCYLMKNLNSQIIYVGKAKNLKNRVRSYF-KSSHTGKTARLVSEIADFEFIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +I++ +P FNI L+    +PYI IT+  + P +    D     G YFGP+
Sbjct: 72  DKEAFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQILIVSDVRKDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T+N +Q+ + LR C         RPCL + + +C G C   +   +Y   + 
Sbjct: 131 PNVYAAQETVNFIQKVYPLRRCHGFQ----KRPCLYYHMGQCLGACFKTVPVAEYDAQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
             K FL+G    +K+++ + M+QA    ++E A   RD+L  +         I N     
Sbjct: 187 RIKSFLNGHVETVKKQLTKRMDQAAADLEFERAAELRDQLNYIEMTVEKQKIISNDNTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +            S +               +   P  
Sbjct: 247 DLFNFYLDKGWLSIQVFFIRQARLMKREKRLFPVVSTAPEEMTSFILQFYNRKNNVLPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           +L+    ++  L +I           +  P++G+K+ +++ A  NA              
Sbjct: 307 VLVPNGLDKQVLSDILGI-------PVRTPQRGQKKDLLDMAQKNARIVLEEKFRLLELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  +++ T    +P    +IE +D+SHI G   V  MVV  +    K  YRK+ L 
Sbjct: 360 ARKTTGAMQEITDALGIPAG-HKIEAFDHSHIQGADLVSAMVVFTDGQPNKKLYRKYKLR 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ A  R V+ RR+++L+K    L              PD++++DGG+ QL A
Sbjct: 419 T--VDHADEAASTREVIRRRYTRLLKEHAAL--------------PDLILMDGGEIQLEA 462

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L +     + ++ K        +       + L L+ +    Y +QR++DE 
Sbjct: 463 AKDVLENELGIAT--PVAAMVKNDHHKTA-DLLASAGDQHLHLDPKSQGFYLLQRIQDEV 519

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K +  S LDEI G+GP  +  LL+ FG++  I+ +S E + S+ GI+
Sbjct: 520 HRFAITFHRQVHTKHSLSSRLDEIPGVGPKTRNKLLRKFGSMSKIAGASLEEIQSL-GIA 578

Query: 597 KKIACKIY 604
           K +A  + 
Sbjct: 579 KNVAQTVK 586


>gi|255534582|ref|YP_003094953.1| Excinuclease ABC subunit C [Flavobacteriaceae bacterium 3519-10]
 gi|255340778|gb|ACU06891.1| Excinuclease ABC subunit C [Flavobacteriaceae bacterium 3519-10]
          Length = 611

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 183/623 (29%), Positives = 298/623 (47%), Gaps = 49/623 (7%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P  PGVY+  D   ++LYVGKA +L+KR+ SY + N   +R   M+++I+ +  
Sbjct: 20  LQLKTLPSEPGVYRYYDKNDQLLYVGKAKHLKKRVLSYFNKNLPGYRTRIMVAKIHRLET 79

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+  +E +ALLLE N+IK  +P +N++L+DDKS+P+I I      P ++  R        
Sbjct: 80  TIVPSEYDALLLENNLIKEHQPFYNVMLKDDKSYPWICI-KNEDFPRIFLTRTMIKDGSE 138

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           Y+GP+A V   +  +++++  + LR+C        +   + + CL F IK C GPC    
Sbjct: 139 YYGPYARVRPAKVLLDTIKHIYKLRTCTLNLSPPKIAEGKYKVCLEFHIKNCQGPCEMLE 198

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y   +   +  + G     KE +   M +      +E A + ++RL  L + Q+ +
Sbjct: 199 SKEDYDLKIDAIRGIIKGDFKRAKEYLVNQMMKYAENLQFEDAHVVKERLDMLENYQHKH 258

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D F +  ++  A +       G    + T  +K   + ++  IL   + +
Sbjct: 259 TVVNPNIDDVDVFGMTSDETAAYVNYFKIQNGNIIQSFTTEIKKILDESDEDILEEAMIE 318

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                            +   +L           VK+ VPK G+K++I+E +  NA    
Sbjct: 319 IRQKFNS----------DSKEILLPFHLTLEIPNVKLIVPKVGDKKRIVELSEKNAKEYR 368

Query: 353 TQKL------STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            +KL        E     I+ +  K   +P  P+ IE +DNS+I G + V   VV     
Sbjct: 369 IEKLKAVQIVDPERHTNRIMAEMQKLLRMPVEPRHIEGFDNSNIQGTNPVSACVVFKNGK 428

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR F  HP  V+  +D A M  V+ RR+ +L++                   P +
Sbjct: 429 PSKADYRIF--HPKTVEGANDFATMEEVIHRRYRRLLEEN--------------SPLPQL 472

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGGKGQLS+A   LK L +  +ITII IAK  +     E +F +    L L+ +   
Sbjct: 473 ILIDGGKGQLSSAVKSLKLLGLYGKITIIGIAKRLE-----EIYFPEDPIPLYLDKKSET 527

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  +QR+RDE+HRF +  HR RRK +   S L+EI GIG     LLL    +VK +  SS
Sbjct: 528 LKILQRVRDESHRFGVKHHRTRRKNSTIKSELEEIPGIGEKAVDLLLSKLKSVKRVKESS 587

Query: 586 PETLASIEGISKKIACKIYNHFH 608
            ETL  I G S+     ++ +F+
Sbjct: 588 RETLEEILGKSRG--GLVWEYFN 608


>gi|295398356|ref|ZP_06808397.1| excision endonuclease subunit UvrC [Aerococcus viridans ATCC 11563]
 gi|294973396|gb|EFG49182.1| excision endonuclease subunit UvrC [Aerococcus viridans ATCC 11563]
          Length = 625

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 164/610 (26%), Positives = 297/610 (48%), Gaps = 43/610 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +   +++Y+GKA NL+ R++SY   + HT +   ++S+I++  + VT T
Sbjct: 13  VPDLPGCYIMKNADDQIIYIGKAKNLKNRVRSYF-KSTHTGKTAQLVSEIDHFDYIVTQT 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + E+LLLE N+IK+ +P +NI L+    +PYI IT+  + P +          G YFGP+
Sbjct: 72  DKESLLLEINLIKKHQPHYNIRLKHGTMYPYIKITN-ERDPQMIITSVVEDDGGEYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            ++ A   T++ LQ+T+ LR C     ++  R C  + + +C GPC  E+  E+Y     
Sbjct: 131 PNIYAASGTLDLLQKTYPLRKCG----KNEKRACFYYHLGQCIGPCDHEVPVEEYKAQKA 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242
             ++FL+G   N+K+ +   M  A+    +E A  +RD++  +       + +   YN  
Sbjct: 187 RIRRFLNGDVKNIKDDLKGKMTAASEDLQFERAAEYRDQINYIEQTVEPQNIMSKQYNDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ             +      S+                +   P+ 
Sbjct: 247 DVFAFYFDKGWISIQVFLLRQFSIIKRDSALFPVYSDPEEELTSYIVQFYQEANHTKPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----ST 358
           IL+    +   + +    K          PK+G+K K+++ A  NA  +H  K       
Sbjct: 307 ILVPGNLDNELIADTVEVKVST-------PKRGDKHKMLQMAQRNAKIAHLDKFRLLAMK 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +   ++   LP++   IE +D+S+I G + V  MV   +    K+ YRK+ + 
Sbjct: 360 EQKTTGAIDQLSEALNLPYLK-VIESFDHSNIQGTNPVSAMVAYEDGRPNKSMYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   ++ A  + V+ RR+ +L+K +                +PD++++DGG  +++A
Sbjct: 419 T--VDGSNEFATTQEVIRRRYGRLLKED--------------GDFPDLILMDGGAIEVNA 462

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ VL+ +L ++  I +  + K  K        F      + L+ R    + +QR++DE 
Sbjct: 463 AREVLEDELGLD--IPVAGMVKDDKHRTAN-LIFGDPLTIIPLDPRSQAFHLLQRIQDEV 519

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HRK R K ++ S LD I+G+GP  +  +L+ F T+K +  ++   + ++  I 
Sbjct: 520 HRFAITFHRKTRSKQSFTSKLDGIDGVGPKTRTKVLRHFKTMKAVREATIADIQAL-SIP 578

Query: 597 KKIACKIYNH 606
           +K+A +I+  
Sbjct: 579 EKVAVEIHKA 588


>gi|222528390|ref|YP_002572272.1| excinuclease ABC subunit C [Caldicellulosiruptor bescii DSM 6725]
 gi|222455237|gb|ACM59499.1| excinuclease ABC, C subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 593

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 192/612 (31%), Positives = 300/612 (49%), Gaps = 36/612 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
               +P  PGVY M D  G V+YVGKA NL+ R++ Y  ++     +   M+ +I ++ +
Sbjct: 6   KLSNLPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSQDMPSKTRLMVRKIKDLDY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  EVEAL+LE N+IK  +P++N+LLRDDK++ YI IT+    P L   R        
Sbjct: 66  IVTDNEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSR 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  +V++T+  L+  F LR+C         + RPCL F I++C G C G++S E
Sbjct: 125 YFGPYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEE 184

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + V  A K LSG    + E++   M +      +E A   +++L++L  I      I
Sbjct: 185 EYQKLVERAVKVLSGKGDEIVEELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVI 244

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           Y      D  +   ++    I       G+      F LK + +         FL Q+Y 
Sbjct: 245 YADDRSEDVINFAKDQTHIAIVVLIIRNGKLINKEEFVLKAEED-----TFERFLEQYYA 299

Query: 296 DK-PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           D    P+ I++  E E    +E    K YG+KVK+ +PKQGEK+++++ A  NA  S   
Sbjct: 300 DVLSLPKEIIIPHEIENFDNIEKMIEKLYGFKVKVIIPKQGEKKQLLDMAKKNAEISLAN 359

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           +   +  +   L        L +  ++IE YD S+I G   VG +VV  +  F K  YRK
Sbjct: 360 RQRVDDVYAEALLTLKSILGLENEIEKIESYDISNIAGADNVGTLVVFEDGRFNKEFYRK 419

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +     + QDD   ++ VL RRF+ L K                   PD++++DGG+ 
Sbjct: 420 FKIKG--FEGQDDIRSVKEVLTRRFTNLEK---------------HGRIPDLILIDGGQN 462

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++AA  VL  L     I +  + K  +         +  G+   +     +   I  ++
Sbjct: 463 QVNAALEVLNTLGF--FIPVAGMVKDDRHKTRD---LIYNGKEAGIQEYPLVYKLIYAIQ 517

Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +E HRFA+  HR+ RKK    S LDEI GIG  RK  L ++FG++  + ++S E +    
Sbjct: 518 EETHRFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAA 577

Query: 594 GISKKIACKIYN 605
            I  ++A KI  
Sbjct: 578 DIPYEVALKIKE 589


>gi|116617637|ref|YP_818008.1| excinuclease ABC subunit C [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096484|gb|ABJ61635.1| Excinuclease ABC subunit C [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 599

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 171/616 (27%), Positives = 291/616 (47%), Gaps = 40/616 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG YQM D  G+++YVGKA NL+ R++SY    +H  +   ++S+I +  F VT +
Sbjct: 16  LPSEPGSYQMKDQNGKIIYVGKAKNLKNRVRSYF-KQDHDGKTAELVSKIVDFDFIVTNS 74

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +IK+ KP +NI L+    +PYI IT K + P +    +     G YFGP+
Sbjct: 75  DKEAFLLENELIKKYKPYYNIRLKYGTGYPYIKIT-KERNPKMALVNEVKKDGGFYFGPY 133

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T+  L++ + LR C         RPCL + + +C G C  ++  ++Y + + 
Sbjct: 134 PNVYAAQETLRFLEKNYPLRRCNGPQ----GRPCLYYNMGQCLGACFRDVPVQEYNDQIS 189

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
             KKFL G    +K++IA  M  A    ++E A   RD+L  +                 
Sbjct: 190 RIKKFLDGDTKIVKKQIAEKMQVAASSLEFERAADLRDQLKYIDETVESQRVLSKDTTPR 249

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    ++  F    +             E+               +   P  
Sbjct: 250 DLFNYYMDKGWMTVEVFFLRQARLIRQFKRTFSIVGEADEEVSSFIQQFYSQKNIQKPRE 309

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           +L+ +  +  +L  +        +V + +P +GEKR++++ A  NA              
Sbjct: 310 VLVPKGIDTKALSAVL-------EVPVRIPVRGEKRELLDLAAKNARIVLEEKFRLMQLN 362

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +K+ T    +P    RIE +D+SH  G   V  MVV  +    K +YRK+ + 
Sbjct: 363 ERKTTGAMKEITDALQIPMG-HRIEAFDHSHTQGVEIVSAMVVFDDGIPNKTEYRKYKIK 421

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  ++ A  + V+ RR+S+L++ +                +PD++++DGG+ QL A
Sbjct: 422 ST--DHANEWAETQEVIRRRYSRLLRED--------------GDFPDLILMDGGEIQLHA 465

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           AQ VL+       I I ++ K  K     +       + + L+ +    + IQR+++E H
Sbjct: 466 AQEVLEDELGLTNIPIAAMVKNDKHKTA-DLIDGVTNQIVTLDKQSEGFFLIQRVQEEVH 524

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI+ HR+ R K +  S LD I G+GP  ++ LL+ FG++  I+ +S   L  I GI++
Sbjct: 525 RFAISFHRQLRSKNSLASRLDTIQGVGPKTRQKLLREFGSLPKITAASVSDLVDI-GINE 583

Query: 598 KIACKIYNHFHKNTSH 613
           K+A  I+       + 
Sbjct: 584 KLARVIHLSLSAGDNS 599


>gi|224541413|ref|ZP_03681952.1| hypothetical protein CATMIT_00575 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525659|gb|EEF94764.1| hypothetical protein CATMIT_00575 [Catenibacterium mitsuokai DSM
           15897]
          Length = 589

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/613 (29%), Positives = 293/613 (47%), Gaps = 46/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M +  G+V+YVGKA  L+ R+ SY     H ++ T ++  I +  + VT +
Sbjct: 15  LPMSPGCYLMKNTEGKVIYVGKARKLKNRVSSYFTGA-HNYKTTKLVDHIWDFDYIVTGS 73

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE N+IK   P +NI+  D+  +PYI +T     P L   R +   +  YFGP+
Sbjct: 74  EKEALLLEINLIKDYTPEYNIMFMDNTYYPYIELT-DETHPRLKIVRKTKNKKNKYFGPY 132

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A   T   L + + LR C         +PCL + + +C GPC  +I   +Y E   
Sbjct: 133 PDATAARNTFKLLNKLYPLRKCNHVP----DKPCLYYSLHQCLGPCINDIDKSQYDEIRK 188

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   F+ G   +  +++   M  A+    +E A  +RD + ++ ++    +  +      
Sbjct: 189 ELISFIHGNTKSKIDELNEKMMTASDNLQFELAKEYRDLIRSIEYVTAKQNVQFGDYKDR 248

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D    Y +K    IQ  F   G+       F          + L  FL  +Y   P P  
Sbjct: 249 DILGYYIDKGYISIQLFFMREGKLL--YHDFNLEPVGEDFEEDLIRFLVTYYQTHPEPYE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +L+ ++ +   L EI           +  P++G+K+ ++E A  NA  +  +K   +   
Sbjct: 307 LLIPQDVDLELLSEIL-------SCHVLQPQRGDKKSLVEMANKNAKEALEKKFLLKEKT 359

Query: 363 QMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  + +  KK  +      IE+YDNS+I G  AV  MVV  +    K  YRK+ + 
Sbjct: 360 DEKTILPIIELGKKLGIETP-HTIELYDNSNIQGAYAVAGMVVYKDGVPSKKDYRKYKIK 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A M+ V+ RR+ +L+  ++ +               D++I+DGG GQ+  
Sbjct: 419 T--VEGPDDYASMKEVIYRRYYRLLMEQKEMA--------------DLIIVDGGLGQIKV 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ V+  LN+   + I  ++K  K S  M     + G  + ++ + P+ + + R++DE H
Sbjct: 463 AKEVIDGLNL--PVHICGLSKDDKHSTAM--LLDENGNQVPIDTKSPLFFLLTRMQDEVH 518

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           R+AI+ HR+ R K+ + S LDE++GIG  RK+ LL  F +VK +  +S E L ++  I K
Sbjct: 519 RYAISFHRQVRSKSLFSSILDEVDGIGEARKKKLLNHFKSVKKMKEASLEELEAV--IPK 576

Query: 598 KIACKIYNHFHKN 610
             A K+Y   HK 
Sbjct: 577 NTALKLYEVLHKE 589


>gi|257063773|ref|YP_003143445.1| excinuclease ABC, C subunit [Slackia heliotrinireducens DSM 20476]
 gi|256791426|gb|ACV22096.1| excinuclease ABC, C subunit [Slackia heliotrinireducens DSM 20476]
          Length = 666

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/646 (27%), Positives = 301/646 (46%), Gaps = 49/646 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
               +P  PGVY   +  G V+YVGKA  L+ R++ Y++  +   +I  ++ QI++  + 
Sbjct: 13  QLASVPTLPGVYLWKNKDGEVIYVGKAKQLRARMRQYVNFQDDRAKIPLLVDQIDSFEYI 72

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V   E EAL+LE N+I +  P FN   +D+KS+P+I +T     PA+   R+       Y
Sbjct: 73  VVENEHEALVLEKNLINQYAPFFNADFKDNKSYPFIALTKGDVFPAIKYTREKHVASTRY 132

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRH-----------------RTRPCLLFQI 164
           FGP+    A  + ++ +++   L S + + +R                   TRPC    +
Sbjct: 133 FGPYTDGRAARQLVDIVRKVVPLCSSSCAEWRRLKKKLDNDDLTAFLSETGTRPCFDAHV 192

Query: 165 KRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
               G C G+I+ E Y   V   +KFLSG      E++ + M +A    D+E A   + R
Sbjct: 193 GLGPGACCGQITPEDYRRHVERVEKFLSGRRTEFIEELTQEMMEAAADLDFERAARLKSR 252

Query: 225 LAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281
           +  ++ + +   ++ +R    D   ++  + +A +       G+   +  F L   S+  
Sbjct: 253 IDTINSLTDRQHAVSSRNLNADVVGIHREETIAGVHVFMIREGRIINSNEFVLDRGSDVP 312

Query: 282 NAQILSYFLRQFYT-DKPCPENILLSEEAEETSLLEISFF----KQYGYKVKITVPKQGE 336
           +  +L  FL ++Y      P  +++  E E++  +E         ++G KV +TVP +GE
Sbjct: 313 DEDLLHTFLLRYYDATTSIPHEVIVERELEDSDAMEEWLTGKLASKFGAKVHLTVPARGE 372

Query: 337 KRKIIEQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392
           K +++E A  NA  +  +        +      L       AL   P RIE +D S I G
Sbjct: 373 KAELLEMARKNASHTLNRYKVRTNYEDKRVNAALLQLESALALDEPPMRIECFDISTIHG 432

Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452
              V  MVV  +    K QYR+F +    +   DD   MR V+ RR+             
Sbjct: 433 SYTVASMVVFTDGRPDKGQYRRFKIKT-PLDEADDFLSMREVIGRRY-----------AP 480

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
            +  +  F   PD++ILDGG  QL+A     +++ + N I +  +AK  +     E F  
Sbjct: 481 ERMADTRFGKKPDLLILDGGLPQLNAVLDQFEEMGI-NDIPVCGLAKRDE-----ELFVP 534

Query: 513 KKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570
            +    +VL      LY ++ +RDE+HRFAIT HR+ R K    S LD++ G+GP+RK+ 
Sbjct: 535 WQQTGPVVLPGGSASLYLVKHVRDESHRFAITFHRELRGKGMTKSILDDVVGLGPVRKKA 594

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           LL+S G  K +  +S E + + + +  ++A ++Y    +      T
Sbjct: 595 LLKSMGGFKKLRAASLEEIKATKSVPAEVAEEVYAVLRQYNEKRTT 640


>gi|90962073|ref|YP_535989.1| excinuclease ABC subunit C [Lactobacillus salivarius UCC118]
 gi|119367662|sp|Q1WT45|UVRC_LACS1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|90821267|gb|ABD99906.1| Excinuclease ABC subunit C [Lactobacillus salivarius UCC118]
          Length = 590

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/616 (29%), Positives = 290/616 (47%), Gaps = 42/616 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M DI  R++YVGKA NL+ R++SY   ++H  +   ++S+I N    
Sbjct: 9   KLKLLPDLPGCYMMKDINSRIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIRNFETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T T+ EA LLE  +I++ KP +NI L+    +PYI IT   K P L          G Y
Sbjct: 68  ITSTDKEAFLLEITLIQKHKPYYNIKLKRGTGYPYIKIT-HEKDPQLKIVSQVKKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A  +T+  LQ+ + LR C         RPCL + + +C G C  E+   +Y 
Sbjct: 127 FGPYPNVYAATETLQLLQKVYPLRRCNGYQ----KRPCLYYHMGQCLGACFKEVPQSEYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + + + K FL+G    +K+++ + M  A+   ++E A   RD++  +         I N 
Sbjct: 183 KQIKKIKSFLNGNVSKIKKELEQKMETASENLEFERAAEIRDQIHYVEMTVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y NK    +Q       +                              ++ 
Sbjct: 243 NTPRDLFAFYMNKGWLSLQIFSIRQARLMKREKRLFPCIDTPEAELESFILQFYNQKNRI 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P+ IL+    ++ +L EI         + +  P++G+KR ++E A  NA          
Sbjct: 303 LPKEILVPSGMDKETLSEIL-------GIPVKTPQRGQKRDLLEMAQKNARLVLEEKFRL 355

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               E      + + T    LP    RIE +D+SH+ G   V  MV   +    K +YRK
Sbjct: 356 LELDERKTTGAMNEITDALGLP-NGHRIEAFDHSHLQGEDLVSAMVCFIDGKPEKTEYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           + L   +V   D+ A  R V+ RR+S+L+K + NL              PD++++DG   
Sbjct: 415 YKLK--NVDHADEAASTREVIYRRYSRLLKEKANL--------------PDLILMDGASI 458

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++AA  VL    +   I +  + K  +          +  E + L+ +    Y +QR++
Sbjct: 459 QINAAVDVLHN-QLGIDIPVAGMVKNDRHKTAD--LMTENDEKIGLDPKSEGFYLLQRIQ 515

Query: 535 DEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR+ R K +  S L+ I G+GP  +  LL+++G++K IS +S E L S+ 
Sbjct: 516 DEVHRFAITFHRQVRSKNSLASRLERIQGVGPKTRIKLLRNYGSLKNISAASVEDLESL- 574

Query: 594 GISKKIACKIYNHFHK 609
           GISKK+A  I      
Sbjct: 575 GISKKVAQTIKLSLKN 590


>gi|315924398|ref|ZP_07920620.1| UvrABC system protein C [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622277|gb|EFV02236.1| UvrABC system protein C [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 654

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/640 (28%), Positives = 314/640 (49%), Gaps = 34/640 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
           + + +P+ PG+Y M + AG ++YVGKA NL  R+  Y  +      +    +S + +I  
Sbjct: 20  NLKNIPKRPGIYIMHNHAGDIIYVGKAKNLFNRVHQYFQNPKKLPLKTQIQVSHVESIET 79

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE+EAL+LE N+IK  +PR+NI+L+DDKS+PYI +T + + P ++  R+     G 
Sbjct: 80  IVVDTEMEALILECNLIKEHRPRYNIMLKDDKSYPYIKVTVQDRFPKIFMTRNHKRDGGK 139

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS--VFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGPF +  AV +TI +LQ+ + L  C         R RPC+ + I +C+ PCTG+++ E
Sbjct: 140 YFGPFTNSMAVRQTIEALQKVYPLHRCNRKLAYGVRRGRPCMYYHIGQCTAPCTGKLTEE 199

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E V+     L+G    L +++++ M  A+ + D+E+A   RD++  +  + +    I
Sbjct: 200 AYRENVNAVLDILNGKEKELIDRLSQEMAAASKRLDFETAASKRDQIQGIQMVVSRQKII 259

Query: 239 YNR---MDCFSLYHN-----------KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ 284
                  D  +               + LA +Q      G+  G     +   +  ++  
Sbjct: 260 SENEQDQDFIAYAVQETPEKNDAKAAEGLASVQIFNVRDGKLLGRHPSMMTGVAGESSES 319

Query: 285 ILSYFLRQFYTD-KPCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
           I++  ++Q+Y      P+ I+LS +   +E   ++     Q G +V +TVP++G+K+++I
Sbjct: 320 IMTNIVKQYYAGAHFIPKEIVLSGDLAVDEAKTIQAWLSSQRGSRVTLTVPQKGDKQRLI 379

Query: 342 EQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397
                NA  + +Q L      E   +  L        +  IP RIE YD S+I G   VG
Sbjct: 380 AMVQKNADLALSQYLLEKHQKEEKKKSRLDSLRDLLDIDAIPHRIEAYDISNISGSDNVG 439

Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE 457
            MVV  E    +  YR+F +    V+ Q+D   M+ +L RR    I+    +        
Sbjct: 440 GMVVFEEGRPQRKAYRRFKIKT--VEGQNDYGSMQEMLFRRIEHGIRE---MKEGKDSGA 494

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
            SF  +P++ ++DGGK  + AA+ +L     E +  +  + K            V + E 
Sbjct: 495 SSFLPFPEIFMIDGGKTHVDAAKAILAMYP-EIKSAVCGLVKDDHHQLRG---LVYRDEE 550

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFG 576
             +    P+   +  + +E HRFAI  HR  RKK    S L+ I GIG  R+  L++ +G
Sbjct: 551 YKVVKGTPLSTLMNEISEEVHRFAIGYHRTLRKKGMLASQLESIPGIGKKRREALMRYYG 610

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
            ++ I  ++ + + ++ G+++K A  + + F +  +   T
Sbjct: 611 NIQNIRNATVDEMCAVNGMNQKSAEAVVDFFSRRAAENQT 650


>gi|325831464|ref|ZP_08164718.1| excinuclease ABC, C subunit [Eggerthella sp. HGA1]
 gi|325486718|gb|EGC89166.1| excinuclease ABC, C subunit [Eggerthella sp. HGA1]
          Length = 788

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/634 (27%), Positives = 305/634 (48%), Gaps = 47/634 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY   D +G+V+YVGKA  L+ R++ Y++  +   +I  ++ QI++  + V  
Sbjct: 119 SVPTLPGVYLWKDKSGQVIYVGKAKQLRARMRQYVNFQDERAKIPLLVDQIDSFDYIVVE 178

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E E+L+LE N+I +  P FN   +DDKS+P+I +T     PA+   R+       YFGP
Sbjct: 179 NEHESLVLEKNLINQHAPFFNADFKDDKSYPFIALTKGDVFPAIKYTREKHRADTKYFGP 238

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR---------------HRTRPCLLFQIKRCSG 169
           +    A    ++  +R   L + + + +R               H  RPC    +    G
Sbjct: 239 YTDSRAARDMVDIARRVVPLCATSCADWRQLKRRLEKDPLALMSHDARPCFDAHVGLGPG 298

Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229
            C G I+ E+Y   V   ++FLSG +    +++   M +A  + D+E A   + R+  ++
Sbjct: 299 ACCGGITPEEYRVHVKRIERFLSGQHREFVDELQAEMQEAAAELDFERAARIKARIDTIN 358

Query: 230 HIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286
            + +   ++  R    D   L+  + +A +       G+   +  F L    +  +  +L
Sbjct: 359 SLTDKQHAVSTRNLDADVVGLFREETVAGVHVFMVREGRIINSNEFVLDRGKDVPDDDLL 418

Query: 287 SYFLRQFYT-DKPCPENILLSEEAEETSLLEISFFKQ----YGYKVKITVPKQGEKRKII 341
             FL ++Y      P  ++L +E E+ + +E    ++    YG KV+IT P++GEK +++
Sbjct: 419 HMFLLRYYDATTSIPHEVILRDEPEDKAAMEAWLTEKLASAYGAKVRITAPQKGEKAELV 478

Query: 342 EQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397
             A  NA  +  +        +      L       AL   P RIE +D S I G   V 
Sbjct: 479 GMAETNAKHTLMRYKVRTNYDDKRINNALLQLESALALDEPPMRIECFDISTIHGSYTVA 538

Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE 457
            MVV       KNQYR+F +    +   +D   M+ V+ RR+              +  +
Sbjct: 539 SMVVFTNGKPDKNQYRRFKIKT-PLDEANDFLSMQEVMGRRY-----------APERMAD 586

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGE 516
             F S PD++ILDGGK QLSAA  + +++ +++ I +  +AK  +     E F       
Sbjct: 587 ERFGSKPDLIILDGGKPQLSAALEMFERMGIDD-IAMCGLAKRDE-----ELFVPWQDTG 640

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575
            +VL      LY ++++RDEAHRFAIT HR+ R K    S LD++ G+GP+RK+ LL++F
Sbjct: 641 PVVLPSGSASLYLVKQVRDEAHRFAITFHRELRGKGMTASILDDVTGMGPVRKKALLKAF 700

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            + K +  ++ E +     +  ++A ++Y    +
Sbjct: 701 KSFKNLKSATLEEIKEARVVPVEVAEELYRVLQQ 734


>gi|313206899|ref|YP_004046076.1| excinuclease ABC, c subunit [Riemerella anatipestifer DSM 15868]
 gi|312446215|gb|ADQ82570.1| excinuclease ABC, C subunit [Riemerella anatipestifer DSM 15868]
 gi|315023975|gb|EFT36977.1| Excinuclease ABC subunit C [Riemerella anatipestifer RA-YM]
 gi|325335664|gb|ADZ11938.1| Nuclease subunit of the excinuclease complex [Riemerella
           anatipestifer RA-GD]
          Length = 601

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 183/623 (29%), Positives = 300/623 (48%), Gaps = 49/623 (7%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P+ PGVY+  D AG++LYVGKA NL+ R+ SY + +   ++   M+ +I+ +  
Sbjct: 12  LQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLRNRVLSYFNKSQVGYKTKIMVKKIHRLEI 71

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+  +E +ALLLE N+IK  +P +NI+++DDKSFP++ I      P L+  R        
Sbjct: 72  TIVPSEYDALLLENNLIKEHQPFYNIMMKDDKSFPWLCI-KNEPFPRLFLTRKRIKDGSE 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEI 175
           Y+GP+A V      + +++  + +R+C  ++   R      + CL + IK C GPC G  
Sbjct: 131 YYGPYAKVKPARVLLETIKNLYKIRTCTLNLSEDRIEKANYKVCLEYHIKNCEGPCEGLE 190

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y + ++  +  + G     K  +   M +     ++E A + +++L  L   Q  +
Sbjct: 191 SEEDYEKKINAVRGIIKGDFRLAKAYLEEEMLKHASNLEFEKAQMVKEKLEFLEDYQVKH 250

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                  + +D F +  ++  A I       G    + T   +   E ++ +IL   +  
Sbjct: 251 TVVNPSIDDVDVFGMVSDETAAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVA 310

Query: 293 FYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                      +L      T + +          VK+ VPK G+K++I+E +  NA    
Sbjct: 311 IRDKFQSESKEILLPFHLGTEIPQ----------VKLIVPKVGDKKRIVELSEKNAREYR 360

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
            +KL        +     I+ +      LP  P+ IE +DNS+I G + V   VV  +  
Sbjct: 361 LEKLKQIQIVDPDRHTNRIMAEMKTLLRLPEEPRHIEGFDNSNIQGTNPVSACVVFKDGK 420

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YR F++    V+  +D A M  V+ RR+ + +   E+L              P +
Sbjct: 421 PSKKDYRIFHIKT--VEGPNDFASMEEVIYRRYKRYLDEGESL--------------PQL 464

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGGKGQLS+A   LKKL++  +I+II IAK  +     E FF      L L+     
Sbjct: 465 ILIDGGKGQLSSAVKSLKKLDLYGKISIIGIAKRLE-----ELFFPNDPIPLYLDKTSET 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L  +QR+RDEAHRF +  HR RR  +   S L+EI G+G     LLL    +VK I  +S
Sbjct: 520 LKVLQRVRDEAHRFGVKHHRTRRTNSTIKSELEEIPGVGAKSIELLLSKLKSVKRIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHFH 608
            ETL  I G SK     ++ +F+
Sbjct: 580 QETLEEILGKSKGS--IVWQYFN 600


>gi|126696315|ref|YP_001091201.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9301]
 gi|126543358|gb|ABO17600.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT
           9301]
          Length = 652

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 199/625 (31%), Positives = 319/625 (51%), Gaps = 27/625 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+  G Y   DI   +LY+GK+  L+ R+ SY ++ ++ T R++ M+ QI  I   VT
Sbjct: 34  EIPKSSGCYLFKDIDNNLLYIGKSKKLRSRVSSYFNNYSDLTPRLSLMVRQITEIEIIVT 93

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--GSY 121
            +E EAL LE+N+IK  KP FNILL+DDK +PY+ IT   K P ++  R          Y
Sbjct: 94  DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEKYPRIFITRRRRNRNNLDRY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+  V  + +T+ ++++ F LR     V++ RT  CL + I RC G C   ISS+ Y 
Sbjct: 154 YGPYVDVGLLRRTLFTIKKIFPLRQRPRPVYKDRT--CLNYSIGRCPGVCQEVISSDDYK 211

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + + +      G N +L+  + + M Q +   DYE+A   RD+++ L  +          
Sbjct: 212 KIMKQVSMIFQGRNDDLEIFLQKKMLQFSNDLDYENAAKIRDQISGLKLLTESQKISIPD 271

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F +   KN+A IQ      G+  G   +  K ++E  N  +       +   +
Sbjct: 272 SSINRDIFGIVSEKNVASIQIFQMRSGKLIGRIGYSQKLNNEDENLILQKILEEHYMNVE 331

Query: 298 P--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           P   P  IL+     + + +E    +    KVKI +PK+ +K + +E  L NA     + 
Sbjct: 332 PVEIPSEILIQYNLPKQATIEDWLTELRKKKVKILIPKRNKKHETVEMVLKNAKLELDRI 391

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+    ++  ++D  +   L   PKRIE YD SHI G   V   VV  +    K  YRK+
Sbjct: 392 LNGIQDNESSIEDLAQILELSEQPKRIEGYDISHIQGSDPVASQVVFIDGVPSKQHYRKY 451

Query: 416 NLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEE--------NLNFHPKKQEYSFPSWPD 465
            +   +V     DD A +  V++RRF +  + +E        N   + K        WPD
Sbjct: 452 KIKDPNVSIGHSDDFASIYEVIQRRFKKWSRFKESGGDFSILNDKTNSKLDNELLSDWPD 511

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++++DGGKGQL+AA   LK+LN+E  +TI S+AK  +     E F     ++L  +    
Sbjct: 512 LIMIDGGKGQLNAAIKALKELNLEEEVTICSLAKKNE-----EIFIPGFTKSLDTDENQK 566

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            +  ++R+RDEAHRFA++ HR +R K    S L +I+G+GP R R LL+ F ++  I  +
Sbjct: 567 GVLLLRRVRDEAHRFALSFHRDKRSKRMNRSQLSQISGLGPSRIRELLEHFKSIDAIRIA 626

Query: 585 SPETLASIEGISKKIACKIYNHFHK 609
           S E L+ ++G+ K     IY +F++
Sbjct: 627 SKEDLSKVKGLGKNSVNDIYEYFNE 651


>gi|157803588|ref|YP_001492137.1| excinuclease ABC subunit C [Rickettsia canadensis str. McKiel]
 gi|189038080|sp|A8EYB9|UVRC_RICCK RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157784851|gb|ABV73352.1| excinuclease ABC subunit C [Rickettsia canadensis str. McKiel]
          Length = 638

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 232/645 (35%), Positives = 342/645 (53%), Gaps = 52/645 (8%)

Query: 1   MSSE--QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+    PEC GVYQM D+  +V+YVGKA NL+KR+ +Y    +  ++   MI+    +
Sbjct: 11  IKSKLVDAPECAGVYQMFDVNKQVIYVGKAKNLKKRLTNY-IKLDLDNKTLRMIANTCFL 69

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-- 116
            ++VT +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I +   H  P L K+R  +   
Sbjct: 70  EYSVTSSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGRTRTL 129

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
             G +FGPFAS  AV  T+  LQ+ F LRSC D+ F  R RPCL ++IKRC  PC  +I+
Sbjct: 130 SDGKFFGPFASATAVNTTLTELQKIFKLRSCTDNYFNSRNRPCLQYEIKRCYAPCISKIN 189

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            + Y E V +   FL G    L+E +++ M + +    +E A   RDR+ ALS++Q    
Sbjct: 190 KKDYAELVIQVTAFLQGHTKELQENLSKKMEELSSHMYFEEAAEIRDRIKALSYVQLKAG 249

Query: 237 SI--YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                   D  ++       C++ C +  GQ  GT  +F      +T   IL YFL QFY
Sbjct: 250 ISDIVKDADIMAIVEKNGHYCVEVCLYRAGQACGTIPYFPTAMGNNTKEAILKYFLLQFY 309

Query: 295 TDKPCPENILLSEEAEETS-LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             +  P  I+++ E E+   ++E         K+ I +P  G K K+++ A  NA  S  
Sbjct: 310 QKQQLPSEIIINNEVEDKEDVIEAIKKINNITKLNIILPISGGKAKLVQNATTNALFSLE 369

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           Q L     +Q I+ +  + F L  IP+RIEIYDNSHI G  AVG MVV G++GF K +YR
Sbjct: 370 QYLKKFAKNQEIMLEIKELFDLSEIPERIEIYDNSHIQGKFAVGVMVVAGKSGFDKKEYR 429

Query: 414 KFNLHPN---------------------------DVKTQDDCAMMRMVLERRFSQLIKNE 446
            F+L  +                           +    DD  M R VL RR ++L +  
Sbjct: 430 VFSLSSHDSITGFSTLTNNLDPVVKQQYDTNGTYNTTVGDDYDMFRQVLTRRLTRLKQEP 489

Query: 447 ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506
             L              P ++I+DGG+G +   + V+ K  +   I  + ++KGP R+AG
Sbjct: 490 YKL--------------PSLMIIDGGRGHVGIVKEVMDKFKM--NIPFVCMSKGPDRNAG 533

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGP 565
           +E+F +   E   L+   P++ ++Q LRD AH FAI  HR  R +    S LD I GIG 
Sbjct: 534 LEQFHMVGKEVFTLDKNLPVMKYLQILRDAAHSFAIKNHRLGRSRTIKLSSLDNIKGIGK 593

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            RK+ LL  FG+ K +  ++ + L  + GISK +A  I+   H++
Sbjct: 594 TRKKSLLHYFGSYKAVCDATIDELVKVHGISKSLAEMIFRTLHQS 638


>gi|116492896|ref|YP_804631.1| excinuclease ABC subunit C [Pediococcus pentosaceus ATCC 25745]
 gi|122265640|sp|Q03F33|UVRC_PEDPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|116103046|gb|ABJ68189.1| Excinuclease ABC subunit C [Pediococcus pentosaceus ATCC 25745]
          Length = 594

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 176/610 (28%), Positives = 294/610 (48%), Gaps = 41/610 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG YQM ++  +++YVGKA NL+ R++SY   ++H  +   ++S+I +  + VT +
Sbjct: 13  LPDKPGCYQMKNLNSQIIYVGKAKNLKNRVRSYF-KSSHEGKTAKLVSEIADFDYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +I++ +P +NI L+    +PYI IT+  K P +          G YFGP+
Sbjct: 72  DKEAFLLEITLIQKFQPYYNIKLKKGTGYPYIKITN-EKDPRMEIVSSVRRDGGFYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ L++ + LR C         RPCL + + +C G C  E+  E+Y + + 
Sbjct: 131 PNVYAAEETLHFLEKVYPLRRCNGFQ----GRPCLYYHMGQCLGACFQEVPKEEYDQQIA 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K FL G    +K+ +   M +A+   ++E A   RD++  +         I N     
Sbjct: 187 KIKSFLRGNVAKIKQSLQTKMQKASEAMEFERAADIRDQIHYIEVTVEKQKIISNDSTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +            ++  +             +K  P  
Sbjct: 247 DLFNFYLDKGWLSIQIFFIRQSRLIKREKRLFPIATDVNDELSSFILQFYNNKNKVLPNE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           IL+    +   + EI         V +  P++GEK+ ++E A  NA              
Sbjct: 307 ILVPSGLDNKIMAEIL-------GVPVRTPQRGEKKNLLELAKENAQITLEEKFRLMELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +K+ T    +P    RIE +D+SHI G   V  MVV  +    K  YRKF L+
Sbjct: 360 ESKTTGAMKEITDALGIP-EGHRIEAFDHSHIQGSELVSAMVVFTDGKPDKKMYRKFKLN 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ A  R V+ RR+ +L+K +++L              PD++++DGG  QL+A
Sbjct: 419 T--VDHADEAASTREVIRRRYVRLLKEKQSL--------------PDLILMDGGDIQLNA 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL    +   I +  + K  K     +  F  + + + L+ +    Y +QR++DE H
Sbjct: 463 AKDVLVN-ELSLHIPVAGMVKNDKHKTS-DLIFGSQDQRVQLDPKSQGFYLVQRIQDEVH 520

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT HR+   K +  S LD I G+GP  +  LL+SFG++  I  ++ + +  + GI +
Sbjct: 521 RFAITFHRQLHAKNSLASQLDLIQGVGPKTRNKLLKSFGSLNKIRDANLKEIEEL-GIPE 579

Query: 598 KIACKIYNHF 607
           K+A  I    
Sbjct: 580 KVAKTIKVSL 589


>gi|281424805|ref|ZP_06255718.1| excinuclease ABC subunit C [Prevotella oris F0302]
 gi|281401175|gb|EFB32006.1| excinuclease ABC subunit C [Prevotella oris F0302]
          Length = 615

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 170/628 (27%), Positives = 307/628 (48%), Gaps = 48/628 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA  L++R+ SY H      +   ++S+I +I +TV  
Sbjct: 19  NMPERPGSYQFYDENKNIIYVGKAKRLKQRVSSYFHKEVDRFKTKVLVSKIRDISYTVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE ++IK+  PR+N+LL+D K++P I IT+    P ++K R+ +   G++FGP
Sbjct: 79  TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-EYFPRIFKTRNINKRFGTFFGP 137

Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           +  V ++   ++ ++     RT  L    + V + + +PCL + I  C  PC G+ S E+
Sbjct: 138 YPHVGSMYAILDIIKRLYKPRTCRLPLTKEGVQQGKFKPCLEYHIHNCDAPCIGKQSYEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E +++A++ L G    + +++ + M +      +E+A   + +++ L+     ++ + 
Sbjct: 198 YQENMNQAREILKGNTREVSKRLYQLMMKNAELLKFEAAEDIKKKISLLNEFVAKSEVVS 257

Query: 240 NRMDCFSLYH-----NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +D   ++        + A I       G    + T+  K   + ++ ++L   +    
Sbjct: 258 HTIDDVDVFTIVDDETNHNAYINYIHVRKGTINQSFTYEYKRKLDESDEELLITAIPDIR 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     E  +             +  VP++G+K+ ++E + +N  +    
Sbjct: 318 ERFKSHAKEIIVPFEMEWKI----------KDAEFFVPQRGDKKHLLELSEMNGKQYKFD 367

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E  H  ++K+   K  LP  P +IE +DNS+I G  AV   +V       
Sbjct: 368 RLKQSEKLNPEQKHTRLMKELQAKLKLPKFPYQIECFDNSNISGTDAVAGCIVYKGMKPS 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           +  YRK+N+    V   DD + M+ V+ RR+S++I+ +                 PD++I
Sbjct: 428 RKDYRKYNIKT--VVGPDDYSSMQEVVRRRYSRMIEEQ--------------TPLPDLII 471

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V+    +   I I  +AK  +     E  +    + + L+++  +  
Sbjct: 472 TDGGKGQMEVVREVVAD-ELHLDIPIAGLAKDDRHRT-NELLYGFPPQIIGLDVKSELFK 529

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HR+AIT HR +R K A +S LD+I G+GP  K  LL+   TVK I  +  +
Sbjct: 530 VLTQIQDEVHRYAITFHRNKRSKHALHSELDDIKGLGPKGKEALLKELKTVKSIKEADSQ 589

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTP 615
            L ++ G SK     +Y HFH     T 
Sbjct: 590 QLITVLGASKGT--IVYKHFHPEMPETE 615


>gi|300172824|ref|YP_003771989.1| excinuclease ABC subunit C [Leuconostoc gasicomitatum LMG 18811]
 gi|299887202|emb|CBL91170.1| excinuclease ABC, C subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 596

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 174/611 (28%), Positives = 284/611 (46%), Gaps = 41/611 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG YQM D  G+++YVGKA NL+ R++SY     H  +   ++  I +  F VT +
Sbjct: 16  LPAEPGSYQMKDQNGKIIYVGKAKNLKNRVRSYF-KQEHNGKTAELVQNIVDFEFIVTNS 74

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +IK+ KP +NI L+    +PYI IT K + P +    +     G YFGP+
Sbjct: 75  DKEAFLLENELIKKYKPYYNIRLKYGTGYPYIKIT-KERDPKMALVNEVKKDGGFYFGPY 133

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T+  L++ + LR C         RPCL + + +C GPC  E+S + Y E + 
Sbjct: 134 PNVYAAQETLRFLEKNYPLRRCNGYQ----GRPCLYYNMGQCLGPCWHEVSKQDYDEQID 189

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRM 242
             K FL G    +K+ IA  M  A    ++E A   RD+L  +                 
Sbjct: 190 RIKHFLDGDTTTVKKAIAEKMKAAADTLEFERAADLRDQLKYIDETVESQRVLSKDTTPR 249

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    ++  F    +                   +          +   P  
Sbjct: 250 DLFNYYLDKGWMTVEVFFLRQARLIRQFKRTFSVVGTEDEEMMNFIQQFYAQRNIQKPHE 309

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           +L+       +L EI         V + +P +GEKR +++ A  NA  +           
Sbjct: 310 VLVPHGINIAALTEIL-------AVSVRIPVRGEKRDLMDLAKKNARIALEEKFRLMQLN 362

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      + + T    +P    RIE +D+SH  G   V  MVV  +    K+ YRK+ + 
Sbjct: 363 EKKTTGAMMEITDALKIPMG-HRIEAFDHSHTQGVEIVSAMVVFDDGVPNKDLYRKYKIK 421

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ A  + V+ RR+S+L+K                   PD++++DGG+ QL A
Sbjct: 422 S--VNHADEWAETQEVIRRRYSRLLKEN--------------GKMPDLILMDGGEIQLHA 465

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL+   +   + I ++ K  K     +    K  + ++L+ +    + IQR+++E H
Sbjct: 466 AKEVLED-ELNLHVPIAAMVKNDKHKTA-DLIDGKTEKIVILDKQSEGFFLIQRVQEEVH 523

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HR+ R K +  S LD I G+GP  ++ LL+ FG++  I+ +S + L  I G+++
Sbjct: 524 RFAINFHRQLRSKNSLASRLDNIQGVGPKTRQKLLREFGSLPKITAASVDDLMMI-GVNE 582

Query: 598 KIACKIYNHFH 608
           K+A  I+    
Sbjct: 583 KLARVIHLSLQ 593


>gi|213018905|ref|ZP_03334713.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995856|gb|EEB56496.1| excinuclease ABC, C subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 585

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 232/606 (38%), Positives = 347/606 (57%), Gaps = 27/606 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M+    +VLY+GKA NL+ R+  Y+   N + RI  MISQ+  +   +T  E+EALLLEA
Sbjct: 1   MIGDKSKVLYIGKAKNLKSRLSDYLQFENLSERIRVMISQVIKVEIFITENEIEALLLEA 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSYFGPFASVDAVEK 133
            +IK LKP +NILLRD KS+PYI I+ KH  P + K+R      +  Y+GPF S  AV+ 
Sbjct: 61  QLIKSLKPSYNILLRDGKSYPYITIS-KHDYPRIAKYRGKFKKNEFHYYGPFPSAAAVKN 119

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           TI SLQ+ F LR C+D  F    RPCL +Q+KRCS PC  +I+ + Y + V +A+  L G
Sbjct: 120 TILSLQKAFLLRVCSDQYFSSTKRPCLEYQVKRCSAPCVDKITKDDYCKSVKQAQDTLLG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIYNRMDCFSLYHNK 251
            N  ++ ++   M + + + +YE A ++RDRL  L  IQ      S     D FS+    
Sbjct: 180 RNKEVQRQLFSTMEKCSREMNYELAAVYRDRLKFLQQIQMQPMDFSFEEDADFFSVVREA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPENILLSEEAE 310
           +LACI    F    N G+  +F++  S+ +N +ILS FL   Y      P  I + +  +
Sbjct: 240 DLACIGVLSFRDKGNYGSIPYFIENCSDHSNDEILSTFLVNLYNPVNTPPAQIYVPDFIK 299

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370
           +  ++E + +      +K+   K  ++R ++     N+  S  QKL+   ++   L++  
Sbjct: 300 DKEIIEQALYALTQKSIKVLHAKNSKERDLLNFIYNNSQHSLEQKLTDYRNNLEKLEELR 359

Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430
           K F+LP+IPKRIE+YDNSHI G   VG M+V G+ GF+K++Y+KF +      + DD  M
Sbjct: 360 KIFSLPNIPKRIEVYDNSHISGNQQVGVMIVAGQEGFLKSEYKKFTIKEE--ISGDDYKM 417

Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490
           MR VL RRFS  IK+                  PD +++DGG G +S  Q VL+ LN+  
Sbjct: 418 MREVLTRRFSGNIKD----------------IIPDFLLIDGGPGHVSIVQNVLEILNI-- 459

Query: 491 RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550
           ++    +AKG  R+AG E+F+V   E   L     ++ ++Q LR+EAHRFAIT+HRK+R 
Sbjct: 460 KVPFACMAKGHDRNAGNERFYVPDREEFTLASDSKVMLYLQLLRNEAHRFAITSHRKKRD 519

Query: 551 KAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           K  + S L EI+G+G  RK+ L+  FG+V+ IS++S   + ++ GISK +A  I  H + 
Sbjct: 520 KQFFASQLSEISGVGSKRKKALMSHFGSVENISKASLAEIQNVPGISKGLAEIILQHVN- 578

Query: 610 NTSHTP 615
           +   TP
Sbjct: 579 SKKGTP 584


>gi|167755831|ref|ZP_02427958.1| hypothetical protein CLORAM_01347 [Clostridium ramosum DSM 1402]
 gi|237734800|ref|ZP_04565281.1| excinuclease ABC subunit C [Mollicutes bacterium D7]
 gi|167704770|gb|EDS19349.1| hypothetical protein CLORAM_01347 [Clostridium ramosum DSM 1402]
 gi|229382128|gb|EEO32219.1| excinuclease ABC subunit C [Coprobacillus sp. D7]
          Length = 590

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 182/614 (29%), Positives = 295/614 (48%), Gaps = 46/614 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D    V+YVGKA  L+ R+ SY     H ++ T ++ +I +  + VT +
Sbjct: 13  LPLQPGCYLMKDKDNTVIYVGKAKKLKNRVSSYFVGA-HNYKTTKLVQEIVDFDYIVTDS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE N+IK   P++NI   D+K +PYI +T K K P L   R++   +  +FGPF
Sbjct: 72  EKEALLLEINLIKDYSPKYNISFMDNKYYPYIQLT-KEKHPRLKIVRNAQDKKHKHFGPF 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A  +T   L R + LR C         +PCL + + +C  PC  E+S E Y E   
Sbjct: 131 PDGTAARETFKLLNRLYPLRKCNHIP----KKPCLYYSLNQCVAPCIQEVSDEVYKEMTS 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
              KF+ G    +   +   M  A+  ++YE A   RD +  + H+ +     +N     
Sbjct: 187 SITKFIQGDTKEIINDLQNKMMSASEVQNYELAKECRDLITHIQHVTSKQHVQFNDLVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D    Y +K   C+Q  F   G+        +   ++    + +  FL QFY +   P+ 
Sbjct: 247 DIVGYYSDKGYLCLQLFFMRNGKLLARDLNLV--PAQDDYQEQIISFLVQFYQENTEPKE 304

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358
           +L+ +E +   L EI   K          P++G K  ++  A  NA              
Sbjct: 305 LLVPQELDIELLKEIVNCKIIK-------PQKGNKANLVAMANENAKEQLEKKFLLIQKN 357

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E S    +K   +   +  +P+RIE++DNS+I G  AV  MV   +    K  YRKF + 
Sbjct: 358 EASTIGAIKQLGEILNI-QLPRRIELFDNSNIQGAYAVAGMVCFKDGTPSKKDYRKFKIK 416

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A M+ V+ RR+ +++                    PD++I+DGGKGQ+  
Sbjct: 417 T--VEGPDDYASMKEVIYRRYYRVLMEG--------------LEKPDLIIVDGGKGQIKV 460

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ V+  LN+   I +  +AK  + S          GE + +N +  + + + R++DE H
Sbjct: 461 AKEVIDALNL--NIMVCGLAKDDRHSTS--VLLDSSGEVVEINRKSELFFLLTRMQDEVH 516

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           R+AI+ H+  R K+ + S LD + GIGP R+++LL+ FG+VK +  +  E L  +  +  
Sbjct: 517 RYAISFHKNVRSKSLFQSILDSVEGIGPKRRKMLLKEFGSVKQLKEAQLEQLERV--LPH 574

Query: 598 KIACKIYNHFHKNT 611
           ++A  ++N    +T
Sbjct: 575 EVALNLFNVLKADT 588


>gi|116333985|ref|YP_795512.1| excinuclease ABC subunit C [Lactobacillus brevis ATCC 367]
 gi|122269331|sp|Q03QP1|UVRC_LACBA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|116099332|gb|ABJ64481.1| Excinuclease ABC subunit C [Lactobacillus brevis ATCC 367]
          Length = 605

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 176/624 (28%), Positives = 286/624 (45%), Gaps = 46/624 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M +I  +++YVGKA NL+ R++SY   ++HT +   ++S+I +    +T T
Sbjct: 13  LPGLPGCYLMKNINSQIIYVGKAKNLKNRVRSYF-KSSHTGKTAQLVSEIVDFETIITST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +I++ +P FNI L+    +PYI IT+  + P L    D       YFGP+
Sbjct: 72  DKEAFLLEITLIQKHQPYFNIKLKRGTGYPYIKITN-ERDPQLLLVSDIRKDGAYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ LQ+ + LR C      H+ RPCL + + +C G C  E+   +Y + + 
Sbjct: 131 PNVYAAEETMHFLQKVYPLRRCPG----HQGRPCLYYHMGQCLGACFKEVPEAEYDQQIR 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K FL+G   + K+ + + M +A     YE A   RD++  +         I N     
Sbjct: 187 KIKSFLNGNVGHAKKDLTQRMEKAAADMAYERAGDLRDQIRYIEATVEKQKIISNDSTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +            + +               +   P  
Sbjct: 247 DIFNFYLDKGWLSIQVFFIRQARLMKREKRLFPVVNSAEEELASFIVQFYQRKNTVLPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           IL+    +   + E+        KV +  P++G KR ++E A  NA              
Sbjct: 307 ILVPASIDHDVIEELL-------KVPVRTPQRGTKRDLLEMAGKNAKLVLEEKFRLLELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +K+ T    +     +IE +D+SHI G   V  MVV  +    K  YRK+ L 
Sbjct: 360 EGKTTGAMKEITDALGIA-PGHKIEAFDHSHIQGADLVSAMVVFVDGQPNKKLYRKYKLQ 418

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ A    V+ RR+ +L+K                   PD++++DGG  Q++A
Sbjct: 419 T--VDHADETASTLEVIRRRYGRLLKEH--------------APMPDLILMDGGDIQMNA 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            + VL+    +  I +  + K        +  F      + L+ +    Y +QR++DE H
Sbjct: 463 VKEVLED-EFDLHIPVAGMVKNDHHKTA-DLLFGPDDHHVHLDPKSQGFYLVQRIQDEVH 520

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI+ HR+   K +  S LD I G+GP  +  LL+ FG+ K IS +S   +  + GIS+
Sbjct: 521 RFAISFHRQVHTKHSLSSRLDRIPGVGPKTRNKLLRKFGSTKKISEASMAEIREL-GISE 579

Query: 598 KIACKIYNHFHKNTSH-----TPT 616
            +A  I+      T+      TPT
Sbjct: 580 AVARTIHVTLAAETAEIKNPRTPT 603


>gi|159903423|ref|YP_001550767.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9211]
 gi|229558454|sp|A9BAF1|UVRC_PROM4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|159888599|gb|ABX08813.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT
           9211]
          Length = 647

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 186/626 (29%), Positives = 306/626 (48%), Gaps = 28/626 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN--HTHRITHMISQINNIRFTV 62
            +P  PG Y M D    +LY+GK+ +L+ R++SY ++NN   + RI+ M+ Q+ +I F +
Sbjct: 23  TIPSEPGCYLMRDKNETLLYIGKSKSLKSRVRSYFNTNNTALSPRISLMVRQVYDIEFIL 82

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STIQGS 120
           T ++ EAL LE+N+IK  +P FNILL+DDK +PY+ IT   + P ++  R       +  
Sbjct: 83  TDSDSEALNLESNLIKEHQPYFNILLKDDKKYPYLCITWSEEYPRIFITRRRRLRNSEDR 142

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GP+  V  + KT+  L++ F LR    ++++ RT  CL + I RC G C   I  + Y
Sbjct: 143 YYGPYVDVTLLRKTLFLLKKLFPLRQRPRALYKDRT--CLNYSINRCPGVCQRLIEPDDY 200

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + + +      G    LK+ + + M   +  +++E A I RD++  +  +         
Sbjct: 201 HKTLKKVAMIFEGRTDQLKDLLHKQMLIQSKLQEFEKAAIIRDQIKGIEQLYAAQKMTIP 260

Query: 241 R----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF--Y 294
                 D   L  + N+ C+Q      G+  G   F   +    +   +       +   
Sbjct: 261 DSTVSRDVLGLSIDSNVCCVQLFQMRAGKLVGRIGFVYNSLELRSELILQKVLEEYYSQI 320

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P  ILL     + S  E    +  G +VKI +PK+ EK ++++    NA     +
Sbjct: 321 DNVTIPPEILLQSSIPQQSYFEQWLSELRGSQVKIVIPKRKEKAELVKLVKRNADIELER 380

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               +  H + L+D T+   L  +P+RIE YD SH+ G   VG  VV  E    K  YRK
Sbjct: 381 VKDGQSKHLIELEDLTQVLDLAFVPRRIEGYDISHLAGTEVVGSQVVFIEGIPAKQHYRK 440

Query: 415 FNLH--PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP--------SWP 464
           + +          DD   +  V+ RRF +  K + +     + +              WP
Sbjct: 441 YAIKSSSISSGHSDDYMALAEVIRRRFRRWSKYKADGLDLTELRNKKLSSLDPLIITDWP 500

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGGKGQL A +  L++L +++ I + S+AK  +     E F       L      
Sbjct: 501 DLIMIDGGKGQLKAVEEALRQLGLDSDINVCSLAKRNE-----EIFVPGSYNKLDTEKNQ 555

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           P L  ++RLRDEAHRFAI  HRK+R      S L +I G+GP R + LL  F +V+ I  
Sbjct: 556 PGLLLLRRLRDEAHRFAINFHRKKRSLSMKRSQLIDIPGVGPRRIKSLLAHFKSVQAIQL 615

Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609
           ++ + +AS+EG+  + A  I+ +F+ 
Sbjct: 616 ATEKEIASVEGLGTETASIIFKYFNP 641


>gi|325105231|ref|YP_004274885.1| excinuclease ABC, C subunit [Pedobacter saltans DSM 12145]
 gi|324974079|gb|ADY53063.1| excinuclease ABC, C subunit [Pedobacter saltans DSM 12145]
          Length = 599

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 175/623 (28%), Positives = 304/623 (48%), Gaps = 53/623 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIRF 60
            + +P  PG+YQ  +  G ++Y+GKA +L+ R+ SY   + +    +   ++ +I +I+F
Sbjct: 8   LKNIPHKPGIYQYYNDEGEIIYIGKAKDLKNRVSSYFIKDTYKINSKTKVLVGKIRDIKF 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+  +EV+A LLE ++IK+ KPR+N+LL+DDK++P+I+I    + P +   R        
Sbjct: 68  TIVDSEVDAWLLENSLIKKHKPRYNVLLKDDKTYPWIVI-KNERFPRIQWTRRIIKDGSK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           Y GP+ SV  +   ++ ++ ++ LR+C       ++   + R CL +QI  C  PC G  
Sbjct: 127 YLGPYPSVAMMHSILDLIKESYQLRTCNLALTPPNIAAGKFRACLEYQIGNCKAPCEGLQ 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           + E Y   ++E K  L+G    +  ++   +++A    ++E A   + +   L   Q+ +
Sbjct: 187 TEEDYRNSINEIKDILNGKTGQVVRQLKDKISEAASSLNFEVAHQLQKKYELLEKYQSKS 246

Query: 236 DS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
                    +D FS+   + +A +       G    T T  +K   + ++ ++L+  + +
Sbjct: 247 TVVNSSITEVDVFSIASEEKIAFVNFLKVMHGTITQTQTIEIKKCLDESDEELLALAISE 306

Query: 293 FYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA--- 348
           F          I++    +                   TVPK GEK+ +++ +L N    
Sbjct: 307 FRNRYKSRSREIIVPFNIDIEDANLK-----------FTVPKAGEKKSLLDLSLKNVLFF 355

Query: 349 ---HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
                   +KL+ +I  + +L    K   L  +PK IE +DNS+  G   V  +VV  + 
Sbjct: 356 KKDKIEQYEKLNPDIKTERLLTKMQKDLHLTELPKHIECFDNSNFQGKYPVSSIVVFKDA 415

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K  YR FN+    V+  +D A M   + RR+ ++++  + L              P 
Sbjct: 416 KPSKKDYRHFNVKT--VEGPNDFATMEEAVYRRYKRVLEENQPL--------------PQ 459

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           +V++DGGKGQLS+A   LKKL +  ++ +I IAK  +     E ++      L L+ +  
Sbjct: 460 LVVIDGGKGQLSSAVKSLKKLGIYEKLAVIGIAKRLE-----ELYYPGDQYPLHLDKKSE 514

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L  IQ LRDEAHRF IT HRK+R +    + L+ I GIG      LL SF +VK I  +
Sbjct: 515 TLKVIQHLRDEAHRFGITFHRKKRDQGTLKTELEMIEGIGKKTSENLLTSFKSVKRIKEA 574

Query: 585 SPETLASIEGISKKIACKIYNHF 607
           + E L ++  ++KK A  I + F
Sbjct: 575 TEEQLLTV--VNKKQAKSIIDFF 595


>gi|259503097|ref|ZP_05745999.1| excision endonuclease subunit UvrC [Lactobacillus antri DSM 16041]
 gi|259168963|gb|EEW53458.1| excision endonuclease subunit UvrC [Lactobacillus antri DSM 16041]
          Length = 603

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 176/615 (28%), Positives = 283/615 (46%), Gaps = 42/615 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +I G+++YVGKA +L+ R++SY   + HT ++  M+S++ +    VT T
Sbjct: 13  LPDKPGCYLMKNINGQIIYVGKAKSLKNRVRSYF-KSTHTGKVAKMVSEVADFETIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             E+ LLE  +I++ +P FNI L+    +PYI IT+  + P +            YFGP+
Sbjct: 72  NKESFLLEITLIQKHQPYFNIKLKRGTGYPYIKITN-ERDPQIKITGKIKKDGAYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ +Q+ + LR C         RPCL + + +C G C  E+   +Y   + 
Sbjct: 131 PNVYAAEETVHFIQKVYPLRRCNGFQ----GRPCLYYHMGQCLGACFKEVPPAEYTAQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
             K FL+G   N+K+ +   MNQA  + +YE A   RD+L  +         I N     
Sbjct: 187 RIKSFLNGNTANVKKHLRAKMNQAASELEYERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +              +               +   P  
Sbjct: 247 DLFNFYMDKGWLSIQVFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           +LL        + EI           +  P++GEKR ++  A  NA              
Sbjct: 307 LLLPAGLPNKEISEILGI-------PVRTPERGEKRDLLAMAAENARLTLDEKFRLLEMD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      +K+ T    LP    +IE +D+SHI G   V  MVV  +    K  YRK    
Sbjct: 360 KGKTTGAMKEITDALGLPVG-HKIEAFDHSHIQGADPVSAMVVFVDGEPAKKLYRK-YKL 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ A  R V+ RR+ +L+K  +                PD++ +DGG  Q++A
Sbjct: 418 KTVVDHADEAASTREVIRRRYGRLLKENK--------------PMPDMIFMDGGDIQMNA 463

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            + VL+ +L ++  I ++ + K  K     +  F      + L+ R    Y +QR++DE 
Sbjct: 464 VKDVLENELGLD--IPVVGMVKNDKHKTA-DLLFGNDDAHVNLDPRSQGFYLVQRIQDEV 520

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR    K +  S LDEI G+GP  +  LL+ +G+V  I+++  E + ++ GI+
Sbjct: 521 HRFAITYHRSVHTKHSLSSRLDEIKGVGPRTRTKLLKKYGSVTKIAQAPVEEIHAL-GIN 579

Query: 597 KKIACKIYNHFHKNT 611
           +  A  I     KN 
Sbjct: 580 RPTAQLIKVSLQKNA 594


>gi|281422328|ref|ZP_06253327.1| excinuclease ABC subunit C [Prevotella copri DSM 18205]
 gi|281403649|gb|EFB34329.1| excinuclease ABC subunit C [Prevotella copri DSM 18205]
          Length = 615

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 169/622 (27%), Positives = 298/622 (47%), Gaps = 48/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA NL++R+ SY H     ++   ++S+I++I +TV  
Sbjct: 19  SMPEKPGSYQYYDENHTIIYVGKAKNLKRRVSSYFHKEVDRYKTKVLVSKIHDISYTVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE ++IK+  PR+N+LL+D K++P I +T+    P ++K R  +   G++FGP
Sbjct: 79  TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICVTN-EYFPRIFKTRHINKKVGTFFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179
           +  + ++   +  +++ +  R+C   + R      R +PCL + I  C  PC  + S E+
Sbjct: 138 YPHIGSMYAVLEVIKKLYKPRTCRMPITREGVAEGRYKPCLEYHIHNCGAPCINKQSYEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A++ L G    + + +   M +      +E A  ++ +   L   +  ++ + 
Sbjct: 198 YQENMRQAREILKGNTREVSKYLYDLMMKNAELLRFEIAEEYKKKYQLLDEFEAKSEVVS 257

Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +    ++          A I       G    + T+  K   E ++ ++L   + +  
Sbjct: 258 HTITDVDVFTIVNDDANKNAFINYIHVKNGTINQSFTYEYKRKLEESDEELLITAIPEIR 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     E  L                VP++G+K+ ++E + +N  +    
Sbjct: 318 ERFHSTSKEIIVPFEMEWKL----------KDATFFVPQRGDKKHLLELSEMNCKQYKFD 367

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     ++K+   K  LP +P +IE +DNS+I G  AV   +V       
Sbjct: 368 RLKQAEKLNPEQKQTRLMKELQAKLKLPKLPYQIECFDNSNISGTDAVAGCIVYKGMKPS 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           +  YRK+N+    V+  DD A M+ V+ RR+S++I+ E  L              PD++I
Sbjct: 428 RKDYRKYNIKT--VEGPDDYASMQEVVRRRYSRMIEEETAL--------------PDLII 471

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V+    +   I I  +AK  +     E  F    + + L     +  
Sbjct: 472 TDGGKGQMDVVREVIVD-ELHLDIPIAGLAKDDRHRT-NELLFGFPPKTIALTPESELFK 529

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HR+AIT HR +R K A +S LD+I GIGP  K  LL  F +VK +  +S E
Sbjct: 530 VLTQIQDEVHRYAITFHRDKRSKHALHSELDDIKGIGPKAKEALLSKFKSVKKMKEASLE 589

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            L+ + G     A  +  +F +
Sbjct: 590 QLSEVLG--PHKAEILAKYFAE 609


>gi|332886124|gb|EGK06368.1| excinuclease ABC, C subunit [Dysgonomonas mossii DSM 22836]
          Length = 604

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 182/626 (29%), Positives = 306/626 (48%), Gaps = 50/626 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
            +P+ PG YQ  D  G ++YVGKA NL+KR+ SY   N+  + +   ++S+I +I++ + 
Sbjct: 12  NIPQKPGCYQYYDAKGVIIYVGKAKNLKKRVSSYFTKNHEDSPKTRILVSKIKDIKYIIV 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E + LLLE ++IK  +PR+N++L+DDKS+P I+I +      +   R        YFG
Sbjct: 72  ESEEDTLLLENSLIKEFQPRYNVMLKDDKSYPSIVIRN-EYFQRIEITRKILKDGSKYFG 130

Query: 124 PFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+++V +V+  +  + + + +R+C      + +   + + CL + IKRC GPC G   SE
Sbjct: 131 PYSNVLSVKTLLELIHKLYPIRTCSLNLTPEKIAEGKYKVCLEYHIKRCKGPCVGLQDSE 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y++ V+  ++ L G  + + E I   M     K+++E A   +++   + + +N +  +
Sbjct: 191 EYIKNVNAIQEILKGNTNLVSESIYSEMQALAEKQEFEEANKLKEKFILIENFKNKSTVV 250

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            +    +D FS   + +   I     + G      TF  +   E    ++L+  + +   
Sbjct: 251 SSIKYNIDVFSYDEDADAGYINYLNVYNGAVIQAYTFEYRKRIEEEKEELLALGIIEVRK 310

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS---- 351
                   ++     +  L            ++I +P++G+K+K++  +  N  +     
Sbjct: 311 RFGSTAKEIVVPFLPDLKLD----------GIEINIPQRGDKKKLLLLSTQNVRQYKVDK 360

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
               + L+ E     ILK+  K   L  +P  IE +DNS+I G + V   VV       K
Sbjct: 361 LKRAESLNPEQRGTRILKEMQKDLNLKDLPSHIECFDNSNIQGTNPVSACVVFKMGKPSK 420

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YR FN+    V   DD + MR V+ RR+ +LI+                   P ++++
Sbjct: 421 KDYRHFNVKT--VIGPDDFSTMREVVYRRYHRLIEEG--------------SPLPQLIVI 464

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQLSAA   LK+L +  ++ I+ IAK  +     E ++ +    L L+     L  
Sbjct: 465 DGGKGQLSAACESLKELGIYGKVAIVGIAKRLE-----EIYYPEDSIPLYLDKNSESLKI 519

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           IQ LRDEAHRF IT HR +R K    S LD I GIG   KRLLL+ F +VK I  +S E 
Sbjct: 520 IQHLRDEAHRFGITFHRNQRSKGQVKSELDNIKGIGEETKRLLLKEFKSVKRIKSASSEE 579

Query: 589 LASIEGISKKIACKIYNHFHKNTSHT 614
           +  + G  K  A  I  +F +     
Sbjct: 580 IEKVVG--KHKATLIDKYFTEEKESQ 603


>gi|294675113|ref|YP_003575729.1| excinuclease ABC subunit C [Prevotella ruminicola 23]
 gi|294472319|gb|ADE81708.1| excinuclease ABC, C subunit [Prevotella ruminicola 23]
          Length = 610

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/622 (28%), Positives = 313/622 (50%), Gaps = 46/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P+ PG YQ  D    ++YVGKA +L+ R+ SY H+     +   ++S+I +I +TV  
Sbjct: 19  RLPDKPGSYQFYDEEHTIIYVGKAKSLKNRVSSYFHTEVDRFKTKVLVSKIFDISYTVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE ++IK+  PR+N+LL+D K++P I+IT+    P ++K R  +   GSY+GP
Sbjct: 79  TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSIVITN-EFFPRIFKTRTINKHWGSYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179
           +A V A+   +N ++  +  R+C   + +      R R CL + IK+C GPC G+ + E 
Sbjct: 138 YAKVSAMYDVLNLIKELYQPRTCRQPITKEGVESGRYRVCLDYHIKKCKGPCVGKQTYED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y + + +A++ L G    + + +   M + + +  +E A   + +  AL    + +    
Sbjct: 198 YQKNIAQAREILKGNTREVLKDLKDEMLRLSEELRFEEAEEVKRKYLALDGFVSKSQVVS 257

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
              +++D F++  ++ +A I       G    + T   K     T+ ++L   + +    
Sbjct: 258 QTIDKVDVFTITSDEKMAFINYIHVSNGSINQSFTIEYKKKLNETDEELLQLGIVEIRER 317

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
                  ++ ++  +  L            VK T+PK G+K+ +++ +++N       +L
Sbjct: 318 FKSDSKEIIVQKEVDVELE----------GVKFTIPKLGDKKMLLDLSMMNCKEYKFDRL 367

Query: 357 ST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                   E     ++K+   K  LP +P +IE +DNS+I G  AV   +V  +    K+
Sbjct: 368 KQAEKLNPEQKQTRLMKELQDKLHLPSLPYQIECFDNSNISGTDAVAACIVFKKMKPSKS 427

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            Y+++N+    V   DD A M+ V+ RR+S+LI+ E+ L              PD++I D
Sbjct: 428 DYKRYNIKT--VVGPDDYASMKEVVHRRYSRLIEEEQPL--------------PDLIIAD 471

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQ+   + V++   +   I I  +AK  +     E  +      + L +   + + +
Sbjct: 472 GGKGQMEVIREVIQD-ELNLDIPIAGLAKDDRHRT-NELLYGFPPMKIALKVESELFHVL 529

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
             ++DE HRFAIT HR +R K A +S LD+I GIGP  +  LL +  +VK I  +   TL
Sbjct: 530 THIQDEVHRFAITFHRDKRSKRALHSELDDIKGIGPKTRDELLNALKSVKKIREAELPTL 589

Query: 590 ASIEGISKKIACKIYNHFHKNT 611
           + I  I    A  IY HFHK  
Sbjct: 590 SEI--IGPAKAQIIYQHFHKEE 609


>gi|215445608|ref|ZP_03432360.1| excinuclease ABC subunit C [Mycobacterium tuberculosis T85]
 gi|289757527|ref|ZP_06516905.1| excinuclease ABC subunit C [Mycobacterium tuberculosis T85]
 gi|289713091|gb|EFD77103.1| excinuclease ABC subunit C [Mycobacterium tuberculosis T85]
          Length = 586

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/590 (27%), Positives = 279/590 (47%), Gaps = 33/590 (5%)

Query: 52  ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111
           ++    + +TV  TEVEAL LE   IK   PRFN+  RDDKS+P + +T   + P L  +
Sbjct: 1   MTTAAKVEWTVVGTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVY 60

Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCS 168
           R        YFGP++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS
Sbjct: 61  RGPRRKGVRYFGPYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCS 120

Query: 169 GPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL 228
            PC G + + ++ + V +   FLSG        + + MN A  + D+E A   RD L+AL
Sbjct: 121 APCIGRVDAAQHRQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSAL 180

Query: 229 SHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNA 283
                    +       D  +   ++  A +Q      G+ RG   + ++   E   +  
Sbjct: 181 KRAMEKQAVVLGDGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIIEKPGEPGDSGI 240

Query: 284 QILSYFLRQFY------------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331
           Q++  FL QFY            +  P P  +L+         L        G +V + V
Sbjct: 241 QLVEQFLTQFYGDQAALDDAADESANPVPREVLVPCLPSNAEELASWLSGLRGSRVVLRV 300

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQM----ILKDFTKKFALPHIPKRIEIYDN 387
           P++G+KR + E    NA  +  Q      S        L+       L   P RIE  D 
Sbjct: 301 PRRGDKRALAETVHRNAEDALQQHKLKRASDFNARSAALQSIQDSLGLADAPLRIECVDV 360

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNE 446
           SH+ G   VG +V   +    K+ YR F +     + + DD A +  V  RRF + ++++
Sbjct: 361 SHVQGTDVVGSLVAFEDGLPRKSDYRHFGIREAAGQGRSDDVACIAEVTRRRFLRHLRDQ 420

Query: 447 ENLN-FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505
            + +   P+++   F   P++ ++DGG  Q++AA  V+ +L V + + +I +AK  +   
Sbjct: 421 SDPDLLSPERKSRRFAYPPNLYVVDGGAPQVNAASAVIDELGVTD-VAVIGLAKRLE--- 476

Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIG 564
             E +   + + +++      LY +QR+RDEAHRFAIT HR +R  +   S LD + G+G
Sbjct: 477 --EVWVPSEPDPIIMPRNSEGLYLLQRVRDEAHRFAITYHRSKRSTRMTASALDSVPGLG 534

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             R++ L+  FG++  +  ++ + + ++ GI    A  +++    ++S  
Sbjct: 535 EHRRKALVTHFGSIARLKEATVDEITAVPGIGVATATAVHDALRPDSSGA 584


>gi|123968512|ref|YP_001009370.1| excinuclease ABC subunit C [Prochlorococcus marinus str. AS9601]
 gi|123198622|gb|ABM70263.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str.
           AS9601]
          Length = 652

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 198/625 (31%), Positives = 318/625 (50%), Gaps = 27/625 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+  G Y   DI   +LY+GK+  L+ R+ SY ++ ++ T R++ M+ QI  I   VT
Sbjct: 34  EIPKSSGCYLFKDIDNNLLYIGKSKKLRSRVSSYFNNYSDLTPRLSLMVRQITEIEIIVT 93

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--GSY 121
            +E EAL LE+N+IK  KP FNILL+DDK +PY+ IT   K P ++  R          Y
Sbjct: 94  DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEKYPRIFITRRRRNRNNLDRY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+  V  + +T+ ++++ F LR     V++ RT  CL + I RC G C   ISS+ Y 
Sbjct: 154 YGPYVDVGLLRRTLFTIKKIFPLRQRPRPVYKDRT--CLNYSIGRCPGVCQEVISSDDYK 211

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + + +      G N +L+  + + M Q +   DYE+A   RD+++ L  +          
Sbjct: 212 KIMKQVSMIFQGRNDDLEIFLQKKMLQFSNDLDYENAAKIRDQISGLKLLTESQKISIPD 271

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F +   KNLA IQ      G+  G   +  K ++E  N  +       +   +
Sbjct: 272 SSINRDIFGIVSEKNLASIQIFQMRSGKLIGRIGYSQKLNNEDENLILQKILEEHYMNVE 331

Query: 298 P--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           P   P  IL+     + + +E    +    KVKI +PK+ +K + +E  L NA     + 
Sbjct: 332 PVEIPSEILIQYNLPKQATIEDWLTELRKNKVKILIPKRNKKHETVEMVLKNAKLELDRI 391

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+    ++  ++D  +   L   PKRIE YD SHI G   V   VV  +    K  YRK+
Sbjct: 392 LNGIQDNESSIEDLAQILELSEQPKRIEGYDISHIQGSDPVASQVVFIDGIPSKQDYRKY 451

Query: 416 NLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNF--------HPKKQEYSFPSWPD 465
            +   +V     DD A +  V+ RRF +  + ++N           + K        WPD
Sbjct: 452 KIKDPNVFVGHSDDFASIYEVIHRRFKKWSRFKKNGGDFSILNDKTNSKLDNELLSDWPD 511

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++++DGGKGQL+AA   LK+L++E  +TI S+AK  +     E F     ++L  +    
Sbjct: 512 LIMIDGGKGQLNAAIKALKELSLEEEVTICSLAKKNE-----EIFIPGFTKSLDTDENQK 566

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            +  ++R+RDEAHRFA++ HR +R K    S L +I+G+GP R R LL+ F ++  I  +
Sbjct: 567 GVLLLRRVRDEAHRFALSFHRDKRSKRMNRSQLSQISGLGPSRIRELLEHFKSIDAIRIA 626

Query: 585 SPETLASIEGISKKIACKIYNHFHK 609
           S E L+ ++G+ K     IY +F++
Sbjct: 627 SKEELSKVKGLGKNSVNDIYEYFNE 651


>gi|333029488|ref|ZP_08457549.1| UvrABC system protein C [Bacteroides coprosuis DSM 18011]
 gi|332740085|gb|EGJ70567.1| UvrABC system protein C [Bacteroides coprosuis DSM 18011]
          Length = 614

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 171/619 (27%), Positives = 314/619 (50%), Gaps = 48/619 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+YQ  D   +++YVGKA NL++R+ SY + ++  ++   ++ +I NI++ V  
Sbjct: 24  SLPETPGIYQYFDDKDKIIYVGKAKNLKRRVTSYFNKDHKANKTKVLVKKIRNIKYIVVN 83

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IK+ +PR+N+LL+DDK++P I + +    P ++K R       SYFGP
Sbjct: 84  TEKDALLLENNLIKKHQPRYNVLLKDDKTYPSICVQN-EFFPRVFKTRKIIKNGSSYFGP 142

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179
           +  +  +   ++ +++ + +R+C  ++ +     ++ + CL + IK C GPC G  + E 
Sbjct: 143 YTHLPTMYTLLDLIKKLYPIRTCKHNLSQENIKSNKFKVCLEYHIKNCLGPCEGLQTEED 202

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y++ + E K+ L G    + +++   M +     ++E A  ++ +L  + + ++ ++ + 
Sbjct: 203 YLQNIAEIKEILKGNTREISKQLKEKMERYAENLEFEKAHEYKHKLTLVENFRSKSEVVS 262

Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
             +    ++  ++     A I       G      T   K     T++++L+  + +  T
Sbjct: 263 TLIHNIDVFSIESNGEKSAYINFLHIANGAINQAYTIEYKKKLNETDSELLAMGIIEMRT 322

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 N ++     +  L            VK T+P++GEK+K+++ + +N  +    +
Sbjct: 323 RFDSNANEIVVPIPLDIDLD----------NVKFTIPQRGEKKKLLDLSRLNVKQYKADR 372

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L           +  +LK+   K  L  +P  IE +DNS+I G   V   +V  +    K
Sbjct: 373 LKQAEKLNPAQRNIRLLKEIQDKLKLQKLPMHIESFDNSNIQGSDPVAACIVFKQGKPSK 432

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRK+N+    V   DD A M  V+ RR+S+L K ++ L              PD++I 
Sbjct: 433 KDYRKYNIKT--VIGPDDYASMHEVVIRRYSRLEKEKQPL--------------PDLIIT 476

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+   +  L+++N+  +I I  +AK  K     E  +    + + +     +   
Sbjct: 477 DGGKGQMEIVRKALEEINL--KIPIAGLAKDDKHRTS-ELLYGFPAQTIGMEPTSGLFKL 533

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           ++R++DE HRFAI  HR +R K    S LD I GIGP  K  LL++F ++K I  +S + 
Sbjct: 534 MERIQDEVHRFAIQFHRDKRSKRQVQSELDNIPGIGPKTKEQLLKTFKSIKRIKEASEDD 593

Query: 589 LASIEGISK--KIACKIYN 605
           L ++ G SK   +  +I+N
Sbjct: 594 LITLIGHSKGTTLWKEIHN 612


>gi|312869033|ref|ZP_07729210.1| excinuclease ABC, C subunit [Lactobacillus oris PB013-T2-3]
 gi|311095459|gb|EFQ53726.1| excinuclease ABC, C subunit [Lactobacillus oris PB013-T2-3]
          Length = 603

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 175/615 (28%), Positives = 284/615 (46%), Gaps = 42/615 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +I G+++YVGKA NL+ R++SY   ++HT ++  M+S++ +    VT T
Sbjct: 13  LPDKPGCYLMKNINGQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             E+ LLE  +I++ +P FNI L+    +PYI IT+  + P +            YFGP+
Sbjct: 72  NKESFLLEITLIQKHQPYFNIKLKRGTGYPYIKITN-ERDPQIKITGKIKKDGAYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ +Q+ + LR C         RPCL + + +C G C  E+   +Y   + 
Sbjct: 131 PNVYAAEETVHFIQKVYPLRRCNGFQ----GRPCLYYHMGQCLGACFKEVPPAEYAAQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
             K FL+G   N+K+ +   MN+A    +YE A   RD+L  +         I N     
Sbjct: 187 RIKSFLNGNTANVKKHLLARMNKAASDLEYERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +              +               +   P  
Sbjct: 247 DLFNFYMDKGWLSIQIFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           +LL        + EI           +  P++GEKR ++  A  NA              
Sbjct: 307 LLLPAGLPNKEISEILGI-------PVRTPERGEKRDLLAMAAENARLTLDEKFRLLEMD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      +K+ T    LP    +IE +D+SHI G   V  MVV  +    K  YRK    
Sbjct: 360 KGKTTGAMKEITDALGLPVG-HKIEAFDHSHIQGADPVSAMVVFVDGEPAKKLYRK-YKL 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   D+ A  R V+ RR+ +L++  +                PD++ +DGG  Q++A
Sbjct: 418 KTVVDHADEAASTREVIRRRYGRLLRENK--------------PMPDMIFMDGGDIQMNA 463

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            + VL+ +L ++  I ++ + K  K     +  F  +   + L+ R    Y +QR++DE 
Sbjct: 464 VKDVLENELGLD--IPVVGMVKNDKHKTA-DLLFGSEDAHVNLDPRSQGFYLVQRIQDEV 520

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR    K +  S LDEI G+GP  +  LL+ +G+V  I+++  E + ++ GI+
Sbjct: 521 HRFAITYHRSVHTKHSLSSRLDEIKGVGPRTRTKLLKKYGSVTKIAQAPVEEIHAL-GIN 579

Query: 597 KKIACKIYNHFHKNT 611
           +  A  I     KN 
Sbjct: 580 RPTAQLIKVSLQKNA 594


>gi|323165291|gb|EFZ51079.1| excinuclease ABC, C subunit [Shigella sonnei 53G]
 gi|323186793|gb|EFZ72113.1| excinuclease ABC, C subunit [Escherichia coli RN587/1]
          Length = 572

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 195/562 (34%), Positives = 302/562 (53%), Gaps = 32/562 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRK--RRKK 551
            +RDE+H  AI  HRK  RR K
Sbjct: 532 HIRDESHDHAIGGHRKNGRRSK 553


>gi|258405897|ref|YP_003198639.1| excinuclease ABC, C subunit [Desulfohalobium retbaense DSM 5692]
 gi|257798124|gb|ACV69061.1| excinuclease ABC, C subunit [Desulfohalobium retbaense DSM 5692]
          Length = 636

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 179/642 (27%), Positives = 289/642 (45%), Gaps = 51/642 (7%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61
           +++ P+CPG Y M D  GRV+YVGKA  L+KR+ SY    +    +   M+ ++ +I   
Sbjct: 6   AKEYPDCPGTYLMKDERGRVIYVGKAKVLRKRLASYFQEPDRLPRKTRVMMDKVWSIETL 65

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EA LLE ++IK+ +PR+NI+LRDDKS+    +  +H  P L   R       +Y
Sbjct: 66  CTETEKEAFLLENSLIKKHRPRYNIILRDDKSYVLFKLDKRHPFPRLSMTRRVVQDGSTY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S  A  +T   L R F LR C  + F +R RPCL + I RC GPC  +I  ++Y 
Sbjct: 126 FGPFTSAVAARETWKLLNRLFPLRKCKQTTFNNRVRPCLQYNIGRCLGPCVYDIPRQEYQ 185

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           E V + + FL+G +  L  ++  +M  A+    +E A   RD++ A+        ++   
Sbjct: 186 EVVRQVELFLTGRSKELLRRLRADMQAASEDLRFEDAARLRDQIQAVEQTVEQQVAVLPG 245

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE------------------S 280
               D   L        +   F   GQ     +FF   +                     
Sbjct: 246 GKDRDVLGLGRTVGGVALGLLFVRQGQLLDQKSFFWAEEDGTDELGLQEETASAQSTAVE 305

Query: 281 TNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340
              ++L  F+ QFY+        ++   A E ++LE    ++ G  V++      ++RK+
Sbjct: 306 EAQEVLRSFVLQFYSPGRYIPERIVLPFAMEDAVLEDILSERRGGPVRLATAHGPQERKL 365

Query: 341 IEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
           +  A  NA ++  +      + +  L+    +  L  +P+RIE  D SH  G   V   V
Sbjct: 366 VSLAETNAVQAGDRA---RKTVEPPLERLQDRLGLSQLPERIEAVDASHFGGQGMVVGQV 422

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460
           V         +  +    P      DD A ++    RR                    S 
Sbjct: 423 VFENGRP-HKEAYRIYAFPELEGAADDYAALQGWARRRLR------------------SG 463

Query: 461 PSWPDVVILDGGKGQLSAAQGVLK---KLNV-ENRITIISIAKGPKRSAGMEK--FFVKK 514
           P WPD++++DGGKGQL A Q  L    +  +  +   + ++AKG +R   +E+  F   +
Sbjct: 464 PPWPDLIVVDGGKGQLQAVQKGLNEGQEAGLAADSFALAALAKGERRGGELEERVFRPGR 523

Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQ 573
              + L      L  +Q +RD  HRF ++  R+ RR K   S L+E+ G+GP    LL  
Sbjct: 524 KNPVALRPGSAELLLLQHIRDSVHRFVLSRQRRTRRAKGLDSRLEELPGVGPRTAHLLWN 583

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
            FGT++ + +++   L ++ GI    A ++       +  TP
Sbjct: 584 HFGTLERMCQATEAELEALPGIGAAKAAQLRRGLASLSPGTP 625


>gi|167628092|ref|YP_001678592.1| excinuclease ABC subunit C [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189038054|sp|B0U172|UVRC_FRAP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|167598093|gb|ABZ88091.1| excinuclease ABC, C subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 612

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 183/615 (29%), Positives = 314/615 (51%), Gaps = 30/615 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +    GVY+MLD  G ++YVGKA NL+ R+ SY        +   M+ Q+  I  T+  
Sbjct: 17  NLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKTLMMVEQVARIEITIAP 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYFG 123
           ++ EA LLE N+IK+ +P++NIL +DDKS+PY++I+ + K P +  +R  S   +G  FG
Sbjct: 77  SDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVIS-RDKFPRVSFYRGKSAYKKGQCFG 135

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S+ +V+ T+N +Q+ F +R C +S ++ R RPCL +QIKRC  PC G +S E+Y E 
Sbjct: 136 PYVSISSVKNTLNIIQKIFPIRQCENSYYKSRVRPCLQYQIKRCLAPCVGLVSQEQYDEQ 195

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR-- 241
           +   KKFL+G   ++ E+I+  M QA+   +YE A ++RD+L  L  +Q           
Sbjct: 196 LAILKKFLAGKFSSVLEEISAKMYQASEDMEYEKAQVYRDQLVILRKLQQQQIVDIQEDK 255

Query: 242 -MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D   +Y   + A I       G       + +          I+  FL  FY      
Sbjct: 256 TFDVIGIYMQDSYASIALLQIQNGDVVADRHWSID-AKGQDKTSIMHAFLSHFYLGDEIR 314

Query: 301 ---ENILLSEEAEETSLLEISF--FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                 ++  + E   + ++     ++ G  +   V    +  K ++ A +NA +     
Sbjct: 315 NIWPKNIILSKVEFADITDLMNSISQKIGQAINWIVAPAADNLKWLKLAEVNARQKLNIY 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            S++  +Q  L+   +   L    KRIE +D SH  G + +   VV  + G  +  +R++
Sbjct: 375 TSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVVYTDEGEDRKSHRRY 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +K  DD A +   + RR S  ++ +                 PDV+I+DGGKGQ
Sbjct: 435 NIKD--IKAGDDYAAIHQAVSRRVSSGLEADN---------------LPDVMIIDGGKGQ 477

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLR 534
           +  A+ V ++  +++++ ++S+ KG +R +G EK +         L+  +P    ++++R
Sbjct: 478 IHQAEAVFREYGIQDKVQLVSLGKGVERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVR 537

Query: 535 DEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AH  AI   RK+       S ++EI G+GP R++ L+  FG  + +SR+  + +A ++
Sbjct: 538 DSAHDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRAFVDEIAKVK 597

Query: 594 GISKKIACKIYNHFH 608
           GIS K+A +I+  FH
Sbjct: 598 GISNKLAQEIWECFH 612


>gi|323186311|gb|EFZ71661.1| excinuclease ABC, C subunit [Escherichia coli 1357]
          Length = 572

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 195/562 (34%), Positives = 302/562 (53%), Gaps = 32/562 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRK--RRKK 551
            +RDE+H  AI  HRK  RR K
Sbjct: 532 HIRDESHDHAIGGHRKNGRRSK 553


>gi|78779302|ref|YP_397414.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9312]
 gi|119367683|sp|Q31AW7|UVRC_PROM9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78712801|gb|ABB49978.1| Excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9312]
          Length = 652

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/625 (31%), Positives = 315/625 (50%), Gaps = 27/625 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+  G Y   DI   +LY+GK+  L+ R+ SY ++ ++ T R++ M+ QI  I   VT
Sbjct: 34  EIPKSSGCYLFKDIDNNLLYIGKSKKLRSRVSSYFNNYSDLTPRLSLMVRQITEIEIIVT 93

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ--GSY 121
            +E EAL LE+N+IK  KP FNILL+DDK +PY+ IT   K P ++  R          Y
Sbjct: 94  DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEKYPRIFITRRRRNRNNLDRY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+  V  + +T+ ++++ F LR     V++ RT  CL + I RC G C   ISS+ Y 
Sbjct: 154 YGPYVDVGLLRRTLFTIKKIFPLRQRPRPVYKDRT--CLNYSIGRCPGVCQEVISSDDYK 211

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + + +      G N +L+  + + M Q +   DYE+A   RD+++ L  +          
Sbjct: 212 KIMQQVSMIFQGRNDDLEIFLQKKMLQFSNDLDYENAAKIRDQISGLKLLTESQKISIPD 271

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--T 295
                D F +   KN+A IQ      G+  G   +  K ++E  N  +       +    
Sbjct: 272 SSINRDIFGIVSEKNVASIQIFQMRSGKLIGRIGYSQKLNNEDENHILQKILEEHYMNVE 331

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P  IL+     + + +E    +    KVKI +PK+ +K + +E  L NA     + 
Sbjct: 332 AVEIPSEILIQYNLPKQATIEDWLTELRKKKVKILIPKRNKKHETVEMVLKNAKLELDRI 391

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+    ++  ++D  +   L   PKRIE YD SHI G   V   VV  +    K  YRK+
Sbjct: 392 LNGIQDNESSIEDLAQILELSEQPKRIEGYDISHIQGSDPVASQVVFIDGIPSKQHYRKY 451

Query: 416 NLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEE--------NLNFHPKKQEYSFPSWPD 465
            +   +V     DD A +  V+ RRF +  + ++        N   + K        WPD
Sbjct: 452 KIKDPNVFVGHSDDFASIYEVIHRRFKKWSRFKKSGGDFSILNDKTNSKLDNELLSDWPD 511

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++++DGGKGQL+AA   L +LN+E  +TI S+AK  +     E F     ++L  +    
Sbjct: 512 LIMIDGGKGQLNAAIKALNELNLEEEVTICSLAKKNE-----EIFIPGFTKSLDTDENQK 566

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            +  ++R+RDEAHRFA++ HR +R K    S L +I+G+GP R R LL+ F ++  I  +
Sbjct: 567 GVLLLRRVRDEAHRFALSFHRDKRSKRMNRSQLSQISGLGPSRIRELLEYFKSIDAIRIA 626

Query: 585 SPETLASIEGISKKIACKIYNHFHK 609
           S E L+ ++G+ K     IY +F++
Sbjct: 627 SKEDLSKVKGLGKNSVNDIYEYFNE 651


>gi|288928690|ref|ZP_06422536.1| excinuclease ABC subunit C [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329674|gb|EFC68259.1| excinuclease ABC subunit C [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 607

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/629 (27%), Positives = 303/629 (48%), Gaps = 48/629 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PG YQ  D    ++YVGKA NL+ R+ SY H      +   ++S+I +I +TV  
Sbjct: 10  SLPDKPGSYQFYDEQHIIIYVGKAKNLKSRVSSYFHKEVDRFKTKVLVSKIFDISYTVVN 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE ++IK+  PR+N+LL+D K++P I IT+    P ++K R  +   G+Y+GP
Sbjct: 70  TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-ELYPRIFKTRTINKRLGTYYGP 128

Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ V  +   +  +      RT       + V   + + CL + I  C  PC G+ S E 
Sbjct: 129 YSHVPTMVALLELIGKLYKPRTCHFPITHEGVEMGKYKACLEYHIHNCDAPCVGKQSWED 188

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A++ L G    +++ +   M +   +  +E A   + R   L +    ++ + 
Sbjct: 189 YQENIRQAREILKGNTREVRKMLYEEMLKKAEELKFEEAEALKKRYILLDNYCAKSEVVS 248

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             +    ++   +      A I       G    + TF  K   + +N  IL+  + +  
Sbjct: 249 FSIADVDVFTITDDEFNRTAFINYLHVKNGTVNQSFTFEYKRKLDESNEDILASAIPEIR 308

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     E ++ E +F           VP++G+KR+++E + +N  +    
Sbjct: 309 ERFGSKAKEIIVPFEMEWAMREATFI----------VPQRGDKRRLLELSEMNGKQYKFD 358

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     ++K+   K  +P +P +IE +DNS+I G  AV   VV       
Sbjct: 359 RLKQSEKLNPEQKAVRLMKELQTKLQMPRLPYQIECFDNSNISGTDAVAGCVVFKGMKPS 418

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V+  DD A M+ V+ RR++++I+ E                 PD++I
Sbjct: 419 KKDYRKYNIKS--VEGPDDYASMKEVVRRRYTRMIEEE--------------TPLPDLII 462

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V+ +  +   I I  +AK  +     E  +    + + L+++  + +
Sbjct: 463 TDGGKGQMGVVREVVVEE-LHLDIPIAGLAKDDRHRT-NELLYGWPPQVVGLDVKSELFH 520

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + R++DE HR+AI+ HR +R K A +S LD+I GIGP  K  LL+   +VK I  +  +
Sbjct: 521 VLTRIQDEVHRYAISFHRDKRSKHALHSELDDIKGIGPKTKATLLKELKSVKQIKEAPLD 580

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTPT 616
            LA    I    A  ++N++H  T +  T
Sbjct: 581 VLAK--HIGNTKAQIVFNYWHNETPNETT 607


>gi|257791532|ref|YP_003182138.1| excinuclease ABC, C subunit [Eggerthella lenta DSM 2243]
 gi|257475429|gb|ACV55749.1| excinuclease ABC, C subunit [Eggerthella lenta DSM 2243]
          Length = 737

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/634 (27%), Positives = 300/634 (47%), Gaps = 47/634 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY   D +G+V+YVGKA  L+ R++ Y++  +   +I  ++ QI++  + V  
Sbjct: 68  SVPTLPGVYLWKDKSGQVIYVGKAKQLRARMRQYVNFQDERAKIPLLVDQIDSFDYIVVE 127

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E E+L+LE N+I +  P FN   +DDKS+P+I +T     PA+   R+       YFGP
Sbjct: 128 NEHESLVLEKNLINQHAPFFNADFKDDKSYPFIALTKGDVFPAIKYTREKHRADTKYFGP 187

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR---------------HRTRPCLLFQIKRCSG 169
           +    A    ++  +R   L + + + +R               H  RPC    +    G
Sbjct: 188 YTDSRAARDMVDIARRVVPLCATSCADWRQLKRRLEKDPLALMSHDARPCFDAHVGLGPG 247

Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229
            C G I+ E Y   V   ++FLSG +    +++   M +A  + D+E A   + R+  ++
Sbjct: 248 ACCGGITPEDYRVHVKRIERFLSGQHREFVDELQAEMQEAAAELDFERAARIKARIDTIN 307

Query: 230 HIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286
            + +   ++  R    D   L+  + +A +       G+   +  F L    +  +  +L
Sbjct: 308 SLTDKQHAVSTRNLDADVVGLFREETVAGVHVFMVREGRIINSNEFVLDRGKDVPDDDLL 367

Query: 287 SYFLRQFYT-DKPCPENILLSEEAEETSLLEISFFKQYGYKV----KITVPKQGEKRKII 341
             FL ++Y      P  ++L +E E+ + +E    ++         +IT P++GEK +++
Sbjct: 368 HMFLLRYYDATTSIPHEVILRDEPEDKAAMEAWLTEKLASPYGAKVRITAPQKGEKAELV 427

Query: 342 EQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397
             A  NA  +  +        +      L       AL   P RIE +D S I G   V 
Sbjct: 428 GMAETNAKHTLMRYKVRTNYDDKRINNALLQLESALALDEPPMRIECFDISTIHGSYTVA 487

Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE 457
            MVV       KNQYR+F +    +   +D   M+ V+ RR+              +  +
Sbjct: 488 SMVVFTNGKPDKNQYRRFKIKT-PLDEANDFLSMQEVMSRRY-----------APERMAD 535

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGE 516
             F S PD++ILDGGK QLSAA  + +++ +++ I +  +AK  +     E F       
Sbjct: 536 ERFGSKPDLIILDGGKPQLSAALEMFERMGIDD-IAMCGLAKRDE-----ELFVPWQDTG 589

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575
            +VL      LY ++++RDEAHRFAIT HR+ R K    S LD++ G+GP+RK+ LL++F
Sbjct: 590 PVVLPSGSASLYLVKQVRDEAHRFAITFHRELRGKGMTASILDDVTGMGPVRKKALLKAF 649

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            + K +  ++ E +     +  ++A ++Y    +
Sbjct: 650 KSFKNLKSATLEEIKEARVVPVEVAEELYRVLQQ 683


>gi|302871016|ref|YP_003839652.1| excinuclease ABC, C subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302573875|gb|ADL41666.1| excinuclease ABC, C subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 593

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/612 (31%), Positives = 300/612 (49%), Gaps = 36/612 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
               +P  PGVY M D  G V+YVGKA NL+ R++ Y  +++    +   M+ +I ++ +
Sbjct: 6   KLSNLPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSSDMLPKTRLMVKKIKDLDY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  E+EAL+LE N+IK  +P++N+LLRDDK++ YI IT+    P L   R        
Sbjct: 66  IVTDNEIEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKIEKDGSR 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  +V++T+  L+  F LR+C         + RPCL F I++C G C G+++ E
Sbjct: 125 YFGPYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFYIEKCLGVCKGDVAEE 184

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   V  A K LSG    + +++   M +      +E A   +++L++L  I      I
Sbjct: 185 EYQRLVEGAIKVLSGKGDEIVQELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVI 244

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           Y      D  +   +     I       G+      F LK D +         FL Q+Y+
Sbjct: 245 YADDRSEDVINFAKDHTHIAIVVLIIRNGKLINKEEFVLKADED-----TFERFLEQYYS 299

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           D    P+ I++    E    +E    K YG+KVK+TVPKQGEK+++++ A  NA  S   
Sbjct: 300 DVVSLPKEIIIPHTIENADNIEKMIEKLYGFKVKVTVPKQGEKKQLLDMAKKNAEISLAN 359

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           +      +   L        L +  ++IE YD S+I G   VG ++V  +  F K  YRK
Sbjct: 360 RQRVGDVYAEALLTLKNLLGLENEIEKIESYDISNIAGADNVGTLIVFEDGRFNKEFYRK 419

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +     + QDD   ++ VL RRF+ L K                   PD++++DGG+ 
Sbjct: 420 FKIKG--FEGQDDIKSVKEVLTRRFTSLEK---------------HGRIPDLILIDGGQN 462

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++AA  VL  L     I +  + K  +         +  G+ + +     +   I  ++
Sbjct: 463 QVNAALEVLNTLGFS--IPVAGMVKDDRHKTRD---LIYNGKEVGIQEYPLVYKLIYAIQ 517

Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +E HRFA+  HR+ RKK    S LDEI GIG  RK  L ++FG++  + ++S E +    
Sbjct: 518 EETHRFAVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAA 577

Query: 594 GISKKIACKIYN 605
            I  ++A KI  
Sbjct: 578 DIPYEVALKIKE 589


>gi|315649369|ref|ZP_07902458.1| excinuclease ABC, C subunit [Paenibacillus vortex V453]
 gi|315275357|gb|EFU38726.1| excinuclease ABC, C subunit [Paenibacillus vortex V453]
          Length = 669

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 156/657 (23%), Positives = 272/657 (41%), Gaps = 62/657 (9%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +  G ++YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 25  LPDLPGCYLMKNQDGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQMLVSEIRDFEYIVTGS 83

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK  +PRFN+LL+DDK++PY+ IT++   P L   R     +  YFGP+
Sbjct: 84  NMEALILECNLIKTHQPRFNVLLKDDKTYPYLKITNEE-HPRLEVTRRVLKDKAKYFGPY 142

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++T   L R + LR C           CL + + +C  PC  E+ +  Y +   
Sbjct: 143 PNAYAAQQTKKLLDRMYPLRKCGVMP----KEVCLYYHMGQCLAPCVKEVPNSAYEQITG 198

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E   FL+GG+  +K+++ R M +A     +E A   RD++  +  +              
Sbjct: 199 EINSFLNGGHEEIKKELQRKMQEAAEDLYFERAKELRDQIIHIDTLMEKQKITTTDTRDR 258

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  +   G+                       F+ Q+Y+D P    
Sbjct: 259 DVFGYAVDKGWMCVQILYMRQGKMVQRNKSVF--PFYGDAHSDFMSFIAQYYSDNPALPQ 316

Query: 303 ILLSEEAEETS------------LLEISFFKQYGYKVKITVPKQGEKRKIIEQALI-NAH 349
            +L                    +   S   +       + P  G   ++ E  +     
Sbjct: 317 EILLPGPLLIEEAAGSVTATGTVIEAESVQGKENAADSASQPTAGSAEELQEALVQAQEE 376

Query: 350 RSHTQKLSTEISHQMILKD------------FTKKFALPHIPKRIEIYDNSH----IMGC 393
           ++  + +         L++              K+             D           
Sbjct: 377 KAEAEGIVDAAGGAAALQEWLGVKVHVPQRGLKKQMVGMASDNARVSLDEKFRLIERDEE 436

Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL--------ERRFS----- 440
                   +GE   +++  R      ++++  +  + M +           R++      
Sbjct: 437 RTSVAAANLGEVIGLQSLNRIEAFDNSNIQGSNPVSAMVVFTNGKPDKKEYRKYKIRTVL 496

Query: 441 ---QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITIIS 496
                    E +    ++        PD++++DGGKGQ+SAA  VL+ +L +   + +  
Sbjct: 497 GPDDYDTMREVIRRRYERVLKENLPLPDLIVVDGGKGQISAAIDVLENELGL--FVPVCG 554

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YS 555
           + K  K             E + L       Y +QR++DE HRFAI+ HR +R K+   S
Sbjct: 555 LVKDAKHKTAQ-LMIGDPPEPVTLPRDSQEFYLLQRIQDEVHRFAISFHRDQRGKSMVTS 613

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            LD I GIG  R++LLL+ FG+VK I  +S E    +  I +K+A +I N   +  S
Sbjct: 614 KLDSIPGIGEKRRKLLLKHFGSVKKIKEASVEDFKPL-SIGEKLATQILNALREEES 669


>gi|238544546|dbj|BAH60898.1| putative excinuclease ABC subunit C [Desulfotignum balticum]
          Length = 588

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 181/598 (30%), Positives = 309/598 (51%), Gaps = 24/598 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTCTEVEALLLE 73
           M D   +++YVGKA +L+KR+ SY    ++   +   +++ + +    +T ++ EA +LE
Sbjct: 1   MKDARKKIIYVGKAKDLKKRLGSYFARQDHTDGKTAALLAMVRDFDVIITASDHEAFILE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
           +N+IK  +PR+N+LL+D K++P + I      PA+ + R     Q  YFGP++S  +V +
Sbjct: 61  SNLIKEYRPRYNVLLKDGKNYPLLRIDMNEPFPAIQRVRRIQNDQALYFGPYSSSRSVNQ 120

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           T+  +Q+ F LR C ++ F++R+RPCL +QI  C GPC  ++  ++Y + V +A  FL G
Sbjct: 121 TLGQIQKIFKLRKCRNTQFKNRSRPCLNYQINACLGPCCLKVDEQEYKQHVKDAVLFLKG 180

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250
            +  + +K+   M       ++E A   RD + A++HI              D  +L   
Sbjct: 181 RSGQVIQKLKAQMQAHAHALEFEKAAQKRDAVTAMTHILEKQVVVAADLKDRDVLALAVE 240

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310
           K +A I       G+   T  + +    + ++  + ++  + +   +  P+ +LL  E E
Sbjct: 241 KEMAVITMMIVRSGRLIDTVHYPVDPGFKESHEILRAFLWQYYDVTRFLPDAVLLDREIE 300

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370
              +L     +Q   KV + VP +GEKR+++E A +NA R   +      + Q  +    
Sbjct: 301 NMDVLASRLSEQKHRKVTVHVPMRGEKRRLVEMADVNAARELEKLRIKTEAAQSAVTQVQ 360

Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430
               +  +P RIE +DNSH+ G   V  MVV       KN YR++ L    +   DD A 
Sbjct: 361 ALLKMDRMPDRIECFDNSHLAGQDPVSSMVVFTRGRPDKNAYRRYILRD--MDRPDDYAG 418

Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490
           M  VL RRF +  K  +               +PD++++DGGKGQL  A  VLK+LN+  
Sbjct: 419 MTQVLTRRFLKTEKEMD---------------FPDLLVVDGGKGQLGMAVAVLKELNLAG 463

Query: 491 RITIISIAKGPKRSAG--MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH-RK 547
           R  +  +AK  +       + +   +   L        L+ +Q++RDEAHRFA+T   ++
Sbjct: 464 RFAVAGLAKKDEAKGEDMDKIYVPGRSNPLNTASFKQGLFLLQQVRDEAHRFAVTFQRKR 523

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           R+K++  S  D I G+GP RK+LLLQ F  ++ +  +S + L S+ GI++K+A +I  
Sbjct: 524 RKKRSRLSVFDAIPGVGPKRKKLLLQQFKGLENLKAASVDELTSLPGITEKLAEQILA 581


>gi|299142034|ref|ZP_07035168.1| excinuclease ABC subunit C [Prevotella oris C735]
 gi|298576496|gb|EFI48368.1| excinuclease ABC subunit C [Prevotella oris C735]
          Length = 615

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 170/628 (27%), Positives = 308/628 (49%), Gaps = 48/628 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA  L++R+ SY H      +   ++S+I +I +TV  
Sbjct: 19  NMPEKPGSYQFYDENKNIIYVGKAKRLKQRVSSYFHKEVDRFKTKVLVSKIRDISYTVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE ++IK+  PR+N+LL+D K++P I IT+    P ++K R+ +   G++FGP
Sbjct: 79  TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-EYFPRIFKTRNINKRFGTFFGP 137

Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           +  V ++   ++ ++     RT  L    + V + + +PCL + I  C  PC G+ S E+
Sbjct: 138 YPHVGSMYAILDIIKRLYKPRTCRLPLTQEGVQQGKFKPCLEYHIHNCDAPCIGKQSYEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E +++A++ L G    + +++ + M +      +E+A   + +++ L+     ++ + 
Sbjct: 198 YQENMNQAREILKGNTREVSKRLYQLMMKNAELLKFEAAEDIKKKISLLNEFVAKSEVVS 257

Query: 240 NRMDCFSLYH-----NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +D   ++        + A I       G    + T+  K   + ++ ++L   +    
Sbjct: 258 HTIDDVDVFTIVDDETNHNAYINYIHVRKGTINQSFTYEYKRKLDESDEELLITAIPDIR 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     E  +             +  VP++G+K+ ++E + +N  +    
Sbjct: 318 ERFKSHAKEIIVPFEMEWKI----------KDAEFFVPQRGDKKHLLELSEMNGKQYKFD 367

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E  H  ++K+   K  LP +P +IE +DNS+I G  AV   +V       
Sbjct: 368 RLKQSEKLNPEQKHTRLMKELQAKLKLPKLPYQIECFDNSNISGTDAVAGCIVYKGMKPS 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           +  YRK+N+    V   DD + M+ V+ RR+S++I+ +                 PD++I
Sbjct: 428 RKDYRKYNIKT--VVGPDDYSSMQEVVRRRYSRMIEEQ--------------TPLPDLII 471

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V+    +   I I  +AK  +     E  +    + + L+++  +  
Sbjct: 472 TDGGKGQMEVVREVVAD-ELHLNIPIAGLAKDDRHRT-NELLYGFPPQTIGLDVKSELFK 529

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HR+AIT HR +R K A +S LD+I G+GP  K  LL+   TVK I ++  +
Sbjct: 530 VLTQIQDEVHRYAITFHRNKRSKHALHSELDDIKGLGPKGKEALLKELKTVKSIKKADNQ 589

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTP 615
            L  + G SK     +Y HFH     T 
Sbjct: 590 RLIQVLGASKGT--IVYKHFHPEMPETE 615


>gi|15678469|ref|NP_275584.1| excinuclease ABC subunit C [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|8134792|sp|O26541|UVRC_METTH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|2621507|gb|AAB84947.1| excinuclease ABC subunit C [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 579

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 187/610 (30%), Positives = 301/610 (49%), Gaps = 46/610 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E++P+  GVY   D   RVLYVGK+ +++KR+ SY        R+  M+  + +I + 
Sbjct: 6   DPEKLPDATGVYIFRDRDDRVLYVGKSISIRKRVSSYFREQE-NPRLRIMMRHLESIEYI 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T  E EAL+LE+N+IKR +P +N+ L+DDK +P+I IT   + P +   R        Y
Sbjct: 65  LTQNEKEALILESNLIKRYRPPYNVRLKDDKRYPFIKIT-DEEYPRVLIVRTIGRDSARY 123

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPF    AV +T+  ++  F +RS      R    PCL  QI  C  PC G IS E Y 
Sbjct: 124 YGPFTDTGAVRRTLKLIKSLFRIRS-----CRRMDGPCLNSQIDLCYAPCDGRISREDYR 178

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E + +   F  G    + E +   M +A+ + ++E A   RD++ ++  +     + +  
Sbjct: 179 EIIEKVDLFFQGRYQEVIEVLEEEMKEASERLEFERAARIRDQIESIREVMERQHASFTD 238

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +L    + + +       G+  G   F L+  +     +IL  FL+Q+Y    
Sbjct: 239 SIDQDIVALERGGDTSAVVVLQIRDGKITGKDDFILRGSA--PRTEILEAFLKQYYAIPR 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
              + +L++   E  ++     +  G +VKI  P+ G  R+++  A  NA    +  L  
Sbjct: 297 RVPSEILTQYPVEDGVIAEWLSELRGEEVKIHSPEGGAGRRLLNIAWKNA----SVILKQ 352

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +   +  L        LP IP+R+E  D S+I G SA G + V  +       YR++ + 
Sbjct: 353 KGRVRDALLQLKDDLKLPEIPRRMEGLDISNIAGESATGSVAVFIDGKPSSGSYRRYRI- 411

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               +  DD AMMR ++ERR+S                       PD+V++DGGKGQL  
Sbjct: 412 --SAQGPDDYAMMRELVERRYS-----------------SPELRKPDLVLIDGGKGQLGV 452

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   LK   V   + ++ IAK  +     E +     E +  ++ D  L  ++ LRDEAH
Sbjct: 453 ALEALKNCGVH--VPVVGIAKKRE-----EVYLPGLSEPV--DVDDGALQILRHLRDEAH 503

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFA+  HR  R + +  S LD I G+GP+RKR LL+ FG++  +  +S E LASI G+++
Sbjct: 504 RFAVKYHRTIRDRDSLESELDGIRGVGPVRKRALLEHFGSLDGVRDASVEELASIPGMTR 563

Query: 598 KIACKIYNHF 607
           ++A +I+ HF
Sbjct: 564 EVAERIHRHF 573


>gi|163789539|ref|ZP_02183977.1| excinuclease ABC subunit C [Carnobacterium sp. AT7]
 gi|159875071|gb|EDP69137.1| excinuclease ABC subunit C [Carnobacterium sp. AT7]
          Length = 592

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/615 (28%), Positives = 295/615 (47%), Gaps = 47/615 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +    ++Y+GKA NL+KR++SY     H  +   ++ +I +    +T T
Sbjct: 13  LPDLPGCYLMKNKEKEIIYIGKAKNLKKRVRSYFRGT-HEGKTQLLVEEIVDFETIITST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + E LLLE  +IK+  P++NI L+   S+PY+ IT+  K P L    +     G YFGP+
Sbjct: 72  DKECLLLEITLIKKHLPKYNIKLKQGTSYPYLKITN-EKDPQLIITSEVKRDGGHYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   +Q+ + LR C         R CL + + +C GPC  EI  E+Y   + 
Sbjct: 131 PNVYAASETQQFIQKVYPLRKCNGYQ----KRACLYYHLGQCIGPCDHEIPKEEYNAQID 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           + ++FL+G    +K+ +   M QA  +  +E A  +R+++  +       + I N     
Sbjct: 187 KIRRFLNGDVKEIKKILKSKMMQAADELAFERAAEYRNQIQYIETTVERQNIITNDFTTR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--CP 300
           D FS Y NK    IQ  F                    T  + L+ ++ QFY ++    P
Sbjct: 247 DVFSYYMNKGWISIQVFFIRQATLIKREATIFPC--YDTPQEELASYMVQFYQEENHLLP 304

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKL 356
           + IL+    +  +L E+        ++ + VP QG K+ +++ A  N+            
Sbjct: 305 KEILVPSGVDTKTLSEVL-------EIPVKVPLQGRKKDMLDLATKNSEISLNEKFQLIE 357

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             +      +K+ ++   LP +  RIE +D+S+I G + V  MV   +    K+ YRK+ 
Sbjct: 358 MDDRKTIGAIKELSEALHLPLVS-RIEAFDHSNIQGTNPVSAMVSFLDGRPDKSNYRKYK 416

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   +V   ++ A    V+ RR+ +L+K  + L              PD++++DGGK Q+
Sbjct: 417 IK--NVHGSNELATTEEVIRRRYERLLKEGKPL--------------PDLILMDGGKIQV 460

Query: 477 S-AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           + A   +  +L +   I +  + K  K        F +K E + L       Y +QR++D
Sbjct: 461 NGAINILENELGLS--IPVAGMVKDDKHRTSS-LIFGEKLEKVSLKPTSQAFYLVQRIQD 517

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HRFAIT HR+ R K +  S LD I G+GP  +  +L+ F +VK ++ +S E +  + G
Sbjct: 518 EVHRFAITFHRQLRGKNSLSSKLDRIEGVGPKTRTKILKHFKSVKKVTEASVEEINGL-G 576

Query: 595 ISKKIACKIYNHFHK 609
           I  K A +I     +
Sbjct: 577 IPLKTAVRIKEALSE 591


>gi|284120321|ref|ZP_06386795.1| excinuclease ABC, C subunit [Candidatus Poribacteria sp. WGA-A3]
 gi|283829423|gb|EFC33805.1| excinuclease ABC, C subunit [Candidatus Poribacteria sp. WGA-A3]
          Length = 583

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/599 (31%), Positives = 297/599 (49%), Gaps = 21/599 (3%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M    G  +Y+GKA NL+ R+ SY    +   +I +++ ++++I + VT  E EAL +E 
Sbjct: 1   MKGPGGTPVYIGKAKNLRARVMSYFQRGSDRGQIPYLVREVDSIDYVVTEGESEALFIEN 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           ++IKR KP++NI L+DDK+F  + ++   + P L + R        YFGPFAS   ++ T
Sbjct: 61  SLIKRHKPKYNIRLKDDKTFSSLRLSVGERFPRLSRTRRIRDDGALYFGPFASGKFLKST 120

Query: 135 INSLQRTFFLRSCADSVF-RHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           +N + R F LR C  S F RH TRPCL + +K CSGPC G+IS E Y E V +A  FL G
Sbjct: 121 VNLVHRLFPLRDCTQSKFERHSTRPCLNYFMKLCSGPCAGKISEEDYGELVSQATSFLRG 180

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHN 250
               L   I   M +A+    YE+A  +RD+L +L             +  MD    Y +
Sbjct: 181 ERKKLVRMIREMMERASEDGRYENAAYYRDQLVSLKENAEIEKVTSSRFEDMDIMGFYRD 240

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310
                        G       F +K+        +  +  R +++D   P+ +LL     
Sbjct: 241 SENYEFTVLLSRGGSVVDKLDFSVKSPHGDEAECVREFLGRFYFSDHYIPKRVLLPLSIR 300

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370
           +         ++ G +V +  P++G K +++  A+ NA  S  +K   +     +L+   
Sbjct: 301 DREGYSEWLTEKKGKRVYVETPRRGPKSELVRFAMKNARESFARKAEEKAEQGTLLRGIR 360

Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430
           K   +  +P  IE +D S+I G   V  +V        +++YRK+ +     K QDD   
Sbjct: 361 KSAGITRVPYAIECFDISNIQGRQTVASLVRFRNARPERDRYRKYRI--TATKGQDDFRS 418

Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490
           M  V+ RR  ++ ++                  PD++++DGGKGQL+AA   L+   V++
Sbjct: 419 MYEVVYRRALRVAEDN--------------WDLPDLILIDGGKGQLNAAYAALRDCGVQD 464

Query: 491 RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550
            + + SIAK   RS     +   KGE    +     +YF+ R+RDEAHRFAIT HR  RK
Sbjct: 465 EVDLASIAKTEGRSGVDRIYVHGKGEPCDFSSNKKGIYFLMRVRDEAHRFAITYHRGLRK 524

Query: 551 -KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            K   S +D + GIG  RK LLL  FG+V+ I  ++ E LA ++G++K+ A  I     
Sbjct: 525 EKTLASQMDGVPGIGKKRKFLLLNHFGSVEKIKGATAEELAYVKGMTKQAARNIKEFLR 583


>gi|256847024|ref|ZP_05552470.1| excinuclease ABC, C subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256715688|gb|EEU30663.1| excinuclease ABC, C subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 603

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/614 (28%), Positives = 282/614 (45%), Gaps = 40/614 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +I G+++YVGKA NL+ R++SY   ++HT ++  M++++ +    +T T
Sbjct: 13  LPDKPGCYIMKNINGQIIYVGKAKNLKNRVRSYF-KSSHTGKVAAMVAEVADFETIITST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             E+ LLE  +I++ +P FNI L+    +PYI IT+  + P +            YFGP+
Sbjct: 72  NKESFLLEITLIQKHQPYFNIKLKQGTGYPYIKITN-ERDPQIMITGQIKKDGAYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ +Q+ F LR C         RPCL + + +C G C   +  +KY   + 
Sbjct: 131 PNVYAAEETVHFIQKVFPLRRCNGYQ----GRPCLYYHLGQCLGACFKTVPKDKYERQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
             K FL+G    +K  + + M  A  K +YE A   RD++  +         I       
Sbjct: 187 RIKSFLNGNTGQVKRHLTKQMEAAAAKMEYERAAEIRDQIHYIEVTVEKQKIISSDETPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +              +               +   P  
Sbjct: 247 DLFNYYMDKGWLSIQVFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYHRRNNILPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           ILL        + EI         V +  P++GEK  ++  A  NA              
Sbjct: 307 ILLPAGLPNKEISEIL-------GVPVRTPQRGEKADLMSMAEENAQLSLSEKFRLLELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      +K+ T    LP    +IE +D+SHI G   V  MVV  +    K  YRK    
Sbjct: 360 KSKTTGAMKEITDALGLPSG-HKIEAFDHSHIQGADPVSAMVVFIDGEPAKKLYRK-YKL 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   D+ A  + V+ RR+S+L+K  +                PD++ +DGG+ Q++A
Sbjct: 418 KTVINHADETASTKEVIRRRYSRLLKENQ--------------PMPDMIFMDGGEIQMNA 463

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            + VL +  ++  I ++ + K  K     +  F    E + LN R    Y +QR++DE H
Sbjct: 464 VKDVL-ENELDLSIPVVGMVKNDKHQTA-DLLFGDHNEHVDLNPRSQAFYLVQRIQDEVH 521

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT H K   K +  S LDEI G+GP  +  L+++FG++  I+ +S + + ++ GI++
Sbjct: 522 RFAITFHHKVHTKHSLSSRLDEIKGVGPRTRNKLMKNFGSLSKIAAASVDDIHAL-GINR 580

Query: 598 KIACKIYNHFHKNT 611
             A  I     KN 
Sbjct: 581 PTAQLIKVSLQKNA 594


>gi|291296770|ref|YP_003508168.1| excinuclease ABC subunit C [Meiothermus ruber DSM 1279]
 gi|290471729|gb|ADD29148.1| excinuclease ABC, C subunit [Meiothermus ruber DSM 1279]
          Length = 598

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 188/609 (30%), Positives = 285/609 (46%), Gaps = 35/609 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PGVY       R++YVGKA NL+ R+ SY H+     RI     +   + F V   
Sbjct: 9   LPETPGVYLWK-TGERIVYVGKAKNLKARVTSYFHAEGKGLRI---CQEATQLDFIVVRD 64

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEALLLEAN+IK  +P +N+L++DDK +P++ +T + + P L   R        Y+GPF
Sbjct: 65  EVEALLLEANLIKHHRPHYNVLMKDDKHYPFLKLT-QEEWPMLMVVRRVQDDGARYWGPF 123

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               AV +    + R F LR  +   F+ R  PCL   + RC  PC G+    +Y   V 
Sbjct: 124 PDASAVRRIKRLVDRFFPLRKNSGFPFKKRRYPCLNHAMGRCLAPCVGQADPAQYQMTVR 183

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR----LAALSHIQNHNDSIYNR 241
           + +  L G    L E + + M QA   +D+E A   RD+     +     Q   D     
Sbjct: 184 QVENLLDGKIEVLYESLEQQMRQAARNQDFERAAEIRDQISAVRSFFGTSQQAYDPELGD 243

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
           +D        + A IQ      GQ  G  + F++   E+++A++L  FLR +Y +     
Sbjct: 244 LDFLGFARAGDYALIQHYQVRGGQMLGRISRFVEGVKEASDAELLEAFLRDYYLEATPLP 303

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ--KLSTE 359
            ++L     E      +F    G KV++ VP++GEK ++IE A  NA  +     KL   
Sbjct: 304 PLVLLPFELEAQEAFSAFLSSKGRKVEVRVPQRGEKTRLIELAQHNAQTALQTELKLMER 363

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                 LK   +   L   P RIE YD S+++G S VG + V       K +YR+  +  
Sbjct: 364 KGDHPGLKGLMEVLGLTRRPYRIEGYDISNLLGESVVGSITVFEGGRPKKAEYRRIKIRG 423

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
              +  DD   M   + RRF+  +  +                 PD++++DGG GQ+ AA
Sbjct: 424 LKGQP-DDFFSMEQTILRRFTGSLAEQ--------------MPIPDLILIDGGLGQVRAA 468

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           Q  L++  +E  I ++ +AK        E   +  G+ + L +  P L  +   RDE HR
Sbjct: 469 QKALQQAGLE--IPLVGLAKRE------ETLVLPDGKTIALPLNHPALQLLIYQRDETHR 520

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
             +  HRK R +KA  S  D+I GIGP RK  L+  F T++ +   S E LA + G  K+
Sbjct: 521 NGLEFHRKLRNQKALKSIFDDIKGIGPARKLALMNHFSTLEELKAMSVEELAKLPGFDKR 580

Query: 599 IACKIYNHF 607
            A  +    
Sbjct: 581 SAQAVLKAL 589


>gi|332096744|gb|EGJ01735.1| excinuclease ABC, C subunit [Shigella boydii 3594-74]
          Length = 572

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 194/562 (34%), Positives = 301/562 (53%), Gaps = 32/562 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I + +                PDV+++DGGKGQ
Sbjct: 429 NI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   + E   L    P L+ IQ
Sbjct: 472 LAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEDEGFSLPPDSPALHVIQ 531

Query: 532 RLRDEAHRFAITTHRK--RRKK 551
            +RDE+H  AI  HRK  RR K
Sbjct: 532 HIRDESHDHAIGGHRKNGRRSK 553


>gi|313884825|ref|ZP_07818577.1| excinuclease ABC, C subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619516|gb|EFR30953.1| excinuclease ABC, C subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 610

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/617 (26%), Positives = 284/617 (46%), Gaps = 43/617 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D  G ++YVGKA  L+ R++SY    + T + T ++S+I +  F VT +
Sbjct: 28  LPNEPGCYIMKDKNGHIIYVGKAKILKNRVRSYFRGAHDT-KTTKLVSEICDFEFIVTNS 86

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EAL+LE N+I++ KP++NI L++   +PY+ IT K K P L          G+YFGPF
Sbjct: 87  NKEALILEINLIQKYKPQYNIRLKEGTMYPYLKIT-KEKDPQLIITNTVKNDGGTYFGPF 145

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T   L + + L         +  R C  + + +C GPC  E+  E Y   + 
Sbjct: 146 PNVYAATQTQQVLYKAYPL----RHCGLNEKRACFYYHLGQCIGPCDHEVPQEVYDRQID 201

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242
           + K+F  G    +K  +   M  A  K ++E A  +RD++  +       + +   Y+ M
Sbjct: 202 KIKRFFKGDVAEIKTALKEKMETAAEKMEFEQAADYRDQIRYIETTVEQQNVMNKDYDNM 261

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+   +K+   IQ      G           +                    +  P+ 
Sbjct: 262 DVFAYVMDKSWLSIQVFMLRQGSILKRKAIIEPSYGNPEEEVTSLIARFYKEQAQIQPKA 321

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLST 358
           IL+  + +   L            + ++ P +G+K  I+E    NA  +          +
Sbjct: 322 ILVPSDVDHELL-------HDFLDLPVSTPLRGKKHSILELCEKNAKIALDEKFRLDAMS 374

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  +++      +P     IE +D+S+I G +AV  MVV       +  YRK+ + 
Sbjct: 375 HKKTVQAVQELADALNIPQAEH-IESFDHSNIQGTNAVSGMVVYTHGKEDRKNYRKYKIK 433

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  ++ A  + V+ RR+S+L+K E+ L              PD++++DGG  Q+ A
Sbjct: 434 T--VEGANEFASTQEVIRRRYSRLLKEEKPL--------------PDLILMDGGIVQVRA 477

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A+ V++ +L +   I +  + K                E + L+ R      +QR+++E 
Sbjct: 478 ARDVIENELGLA--IPVAGMVKNDHHKTAA-LLDGYSEEIIYLDPRSQAFRLLQRVQEEV 534

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HR+AI+ HR  R K  + S L+EI+G+GP  +  LL+ F +++ I  +S E + ++ GI+
Sbjct: 535 HRYAISYHRNVRSKNTFASILEEIDGVGPKTRSKLLKHFKSLQNIKIASSEEIQAL-GIN 593

Query: 597 KKIACKIYNHFHKNTSH 613
           +K A  +    +K +  
Sbjct: 594 QKTAIAVLEALNKTSRD 610


>gi|317490666|ref|ZP_07949133.1| excinuclease ABC [Eggerthella sp. 1_3_56FAA]
 gi|316910228|gb|EFV31870.1| excinuclease ABC [Eggerthella sp. 1_3_56FAA]
          Length = 731

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 177/630 (28%), Positives = 304/630 (48%), Gaps = 47/630 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY   D +G+V+YVGKA  L+ R++ Y++  +   +I  ++ QI++  + V  
Sbjct: 119 SVPTLPGVYLWKDKSGQVIYVGKAKQLRARMRQYVNFQDERAKIPLLVDQIDSFDYIVVE 178

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E E+L+LE N+I +  P FN   +DDKS+P+I +T     PA+   R+       YFGP
Sbjct: 179 NEHESLVLEKNLINQHAPFFNADFKDDKSYPFIALTKGDVFPAIKYTREKHRADTKYFGP 238

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR---------------HRTRPCLLFQIKRCSG 169
           +    A    ++  +R   L + + + +R               H  RPC    +    G
Sbjct: 239 YTDSRAARDMVDIARRVVPLCATSCADWRQLKRRLEKDPLALMSHDARPCFDAHVGLGPG 298

Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229
            C G I+ E+Y   V   ++FLSG +    +++   M +A  + D+E A   + R+  ++
Sbjct: 299 ACCGGITPEEYRVHVKRIERFLSGQHREFVDELQAEMQEAAAELDFERAARIKARIDTIN 358

Query: 230 HIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286
            + +   ++  R    D   L+  + +A +       G+   +  F L    +  +  +L
Sbjct: 359 SLTDKQHAVSTRNLDADVVGLFREETVAGVHVFMVREGRIINSNEFVLDRGKDVPDDDLL 418

Query: 287 SYFLRQFYT-DKPCPENILLSEEAEETSLLEISFFKQ----YGYKVKITVPKQGEKRKII 341
             FL ++Y      P  ++L +E E+ + +E    ++    YG KV+IT P++GEK +++
Sbjct: 419 HMFLLRYYDATTSIPHEVILRDEPEDKAAMEAWLTEKLASAYGAKVRITAPQKGEKAELV 478

Query: 342 EQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397
             A  NA  +  +        +      L       AL   P RIE +D S I G   V 
Sbjct: 479 GMAETNAKHTLMRYKVRTNYDDKRINNALLQLESALALDEPPMRIECFDISTIHGSYTVA 538

Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE 457
            MVV       KNQYR+F +    +   +D   M+ V+ RR+              +  +
Sbjct: 539 SMVVFTNGKPDKNQYRRFKIKT-PLDEANDFLSMQEVMGRRY-----------APERMAD 586

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGE 516
             F S PD++ILDGGK QLSAA  + +++ +++ I +  +AK  +     E F       
Sbjct: 587 ERFGSKPDLIILDGGKPQLSAALEMFERMGIDD-IAMCGLAKRDE-----ELFVPWQDTG 640

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSF 575
            +VL      LY ++++RDEAHRFAIT HR+ R K    S LD++ G+GP+RK+ LL++F
Sbjct: 641 PVVLPSGSASLYLVKQVRDEAHRFAITFHRELRGKGMTASILDDVTGMGPVRKKALLKAF 700

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYN 605
            + K +  ++ E +     +  ++A ++Y 
Sbjct: 701 KSFKNLKSATLEEIKEARVVPVEVAEELYR 730


>gi|302340538|ref|YP_003805744.1| excinuclease ABC, C subunit [Spirochaeta smaragdinae DSM 11293]
 gi|301637723|gb|ADK83150.1| excinuclease ABC, C subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 601

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 178/606 (29%), Positives = 290/606 (47%), Gaps = 31/606 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
             P  PGVY M D  G ++Y+GKA NL+KR+ SY   N    +   ++ +I+ I +  T 
Sbjct: 11  DFPGSPGVYLMRDTGGVIIYIGKAKNLKKRVSSYFSGN-KDVKTRVLVDRIDRIEYITTG 69

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EALLLE N+IK   PR+NI L+D KS+P I IT     P +++ R        YFGP
Sbjct: 70  NEYEALLLENNLIKEHTPRYNINLKDGKSYPVIRIT-AEPFPRIFRTRRIIQDGSEYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +V  ++  ++ ++R F LR C     + R  PCL + I RCS PC G+I  E Y+  V
Sbjct: 129 YTNVGDIDVYLDLIERLFPLRKCK-GKVKKREHPCLYYHIGRCSAPCCGKIDRESYLRHV 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL---AALSHIQNHNDSIYNR 241
             A++ LSG    L   + R M +A  + D+E A   RD +     +   Q   D     
Sbjct: 188 DGARRLLSGETEELLVGLRRRMEEAASRLDFEKAAELRDTISAVETVGKDQEVVDFSSES 247

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +   N +L          G+  G      +  + S+  +  S F  ++Y +     
Sbjct: 248 RDYVACAMNDSLCSFAVFRMRDGKLVGR--DLYRGRALSSEDEAFSQFFLRYYGELKDIP 305

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
             + +    +T L+   F  +    V I +P++G+  +I+   L NA     ++L  E +
Sbjct: 306 ETVFTSGGFDTELVASFFKNERNKDVSIIIPEEGKHSRILRMVLDNALHDLEKRLKAEAN 365

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L++      L  +P+RIE +D + + G   V  MV        K  YR+F++    
Sbjct: 366 IPG-LEELRTILGLKKLPRRIEGFDIAQLSGKYPVASMVSFYNGNPDKGSYRRFHIKT-L 423

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   +R V+ RR+++++                    PD+V++DGGKGQ++AA+ 
Sbjct: 424 EGKIDDYEAIREVVARRYTRVVNEG--------------IERPDLVLIDGGKGQVNAARA 469

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +L  + +++ + +I +AK  +     E  F   GE + L   +  L  +Q +RDE+HRFA
Sbjct: 470 ILNAVGLKD-VAVIGLAKQFE-----EIHFPGSGEPVRLPEGNEALRVLQAVRDESHRFA 523

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
              ++  RKK    S L+ I GIG  R   LL +FG+++ I+ +S + +A I G  +  A
Sbjct: 524 TGFNKHLRKKGVKLSSLESIPGIGAKRAAALLSTFGSLEAIAEASVDKIAEIAGNGQDGA 583

Query: 601 CKIYNH 606
             +   
Sbjct: 584 ADVLQA 589


>gi|304383739|ref|ZP_07366198.1| excision endonuclease subunit UvrC [Prevotella marshii DSM 16973]
 gi|304335263|gb|EFM01534.1| excision endonuclease subunit UvrC [Prevotella marshii DSM 16973]
          Length = 615

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/628 (25%), Positives = 308/628 (49%), Gaps = 48/628 (7%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PG YQ  D +  ++Y+GKA +L+KR+ SY       ++   ++S+I +I +TV 
Sbjct: 18  QSLPNMPGSYQFYDSSHTIIYIGKAKDLKKRVASYFRKEVDRYKTKVLVSKIQDISYTVV 77

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE +ALLLE N+IK+  PR+N+LL+D K++P I IT+    P ++K R  +   G+Y+G
Sbjct: 78  NTEEDALLLENNLIKKYNPRYNVLLKDGKTYPSICITN-EFFPRIFKTRTINKKLGTYYG 136

Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P++ V ++   ++ + + +  R+C      + + + + +PCL + I+ C  PC  + + E
Sbjct: 137 PYSYVGSMHAALDLINKLYKPRTCRFPITQEGILKKKYKPCLKYHIQNCDAPCIAKQTHE 196

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y+  + +A++ L G    + + +   M Q   +  +E A   + +   + +    ++ +
Sbjct: 197 EYLANIAQAREILKGNTREVSKYLYNEMQQKASELKFEEAEELKKKYLIIKNFCEKSEVV 256

Query: 239 YNRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            + +    ++   N      A I       G    + TF  K   + ++  +L   + + 
Sbjct: 257 SHTITDIDVFSIANDTNKKNAYINYIHVKNGVINQSFTFEYKRKLDESDTHLLLMAIPEI 316

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                     +L     +  +                +PK G+K+++++ + +N  +   
Sbjct: 317 RERFHSTAREILVPLEIDWKI----------KDALFVIPKSGDKKRLLDLSEMNCKQYQF 366

Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
            +L        E     ++K+  +K  LP+IP  IE +DNS+I G +AV   VV      
Sbjct: 367 DRLKQAEKLNPEQKLVRLMKELQEKLKLPNIPYHIECFDNSNISGTNAVAGCVVFKGFKP 426

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K  YR++N+    V+  +D A M+ V+ RR+S++++                 + P ++
Sbjct: 427 SKKDYRRYNIKT--VEGPNDYASMQEVVYRRYSRMLEEG--------------STLPHLI 470

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           I DGGKGQ+   + V++   +   I I  +AK   R    E       + + L +   + 
Sbjct: 471 ITDGGKGQMEVVRTVIED-QLGLSIPIAGLAK-DNRHRTNELLCGFPPQTVALKVNSELF 528

Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           + + +++DE HR+AIT HR++R K A +S LD+I GIG   +  LL S  +V+ I  ++ 
Sbjct: 529 HKLTQIQDEVHRYAITFHREKRSKNALHSELDQIKGIGSKTRDALLGSLRSVESIKEANI 588

Query: 587 ETLASIEGISKKIACKIYNHFHKNTSHT 614
           +TL  I  I +  A  +Y +FH+ T+ T
Sbjct: 589 QTLTKI--IGQAKAHLVYQYFHEETAET 614


>gi|306521700|ref|ZP_07408047.1| excinuclease ABC subunit C [Clostridium difficile QCD-32g58]
          Length = 589

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 191/595 (32%), Positives = 310/595 (52%), Gaps = 40/595 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
            +++P  PGVY M D    ++YVGKA +L+ R++ Y  S+ NHT ++  M+  I    + 
Sbjct: 8   LKKLPSEPGVYLMKDKYDHIIYVGKAISLKNRVRQYFQSSKNHTSKVKSMVKNIYKFEYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T +E+EAL+LE N+IKR +P++N++LRDDK++PYI +T     P + K R     +  Y
Sbjct: 68  ITDSELEALILECNLIKRYRPKYNVVLRDDKTYPYIKVTTNEDYPRILKVRRVLKDKAKY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           FGP+ ++ AV  T+  +  T+ +RSC    D   +++TRPCL   I +C GPCTG +S E
Sbjct: 128 FGPYTNITAVNDTLELISSTYPIRSCKIDIDKAIKNKTRPCLNLHINKCLGPCTGNVSKE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + E    LSG    L E +   MN++++   +E A ++RD++ +L  +       
Sbjct: 188 EYGKMIEEIIMCLSGKEEKLMELLKEKMNESSMNFRFEEAAVYRDKIKSLEEMIQKQKID 247

Query: 239 YN----RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                   D  ++    N AC+Q  F   G+  G   F L+   +S  A ILS F++QFY
Sbjct: 248 ATVSDLNQDVVAMARAHNEACVQVFFIRNGKIVGREHFILEGVMDSPRASILSSFVKQFY 307

Query: 295 TDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
            ++   P+ +++ +E E++S+LE     + G KV I VP++GEK+ ++E    NA     
Sbjct: 308 NEQEYIPKELIIEDEIEDSSILEEWLSSKKGQKVTIRVPQKGEKKSLVEMVRKNAVEYLE 367

Query: 352 --HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                           L++  +   L  +P RIE YD S+I G  ++G MVV       K
Sbjct: 368 KFSDMNKRKYEKSIGALEELKQILNLEKLPIRIEAYDISNIQGVDSIGSMVVYTNAKKDK 427

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
            +YR++ +    V   +D   M  +++RR                       + PD+++L
Sbjct: 428 KEYRRYKIKT--VIGPNDYDSMAEIVDRRLKH-------------------GNLPDLILL 466

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+SA + VL+  +V+  I +  + K  K         + K + + L+    +  F
Sbjct: 467 DGGKGQVSAVKKVLELNDVD--IPLWGMYKDDKHRTKG---LICKEKEIELDKTTNLYRF 521

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           I  +++E H +AIT HR  R KA   S LD+I GIG  RK+ LL  F  V+ I +
Sbjct: 522 IASIQEEVHNYAITYHRSLRNKALTKSILDDIQGIGEKRKKSLLNHFKDVEAIKK 576


>gi|269215596|ref|ZP_06159450.1| excinuclease ABC subunit C [Slackia exigua ATCC 700122]
 gi|269131083|gb|EEZ62158.1| excinuclease ABC subunit C [Slackia exigua ATCC 700122]
          Length = 673

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 166/637 (26%), Positives = 292/637 (45%), Gaps = 49/637 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PGVY   + AG V+YVGKA  L+ R++ Y++  +   +I  +++QI+   + 
Sbjct: 25  ELDSVPTRPGVYLWKNAAGEVIYVGKAKQLRARMRQYVNFQDDRAKIPLLVAQIDTFEYI 84

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V   E E+L+LE N+IK+  P FN   +DDKS+P+I +T     PA+   R+       Y
Sbjct: 85  VVENEHESLVLEKNLIKQYAPFFNADFKDDKSYPFIALTKGDVFPAIKYTREKHVATTRY 144

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT-----------------RPCLLFQI 164
           FGP+    A    ++  ++   + +   + +R                    RPC    +
Sbjct: 145 FGPYTDGRAARSLVDIARKLVPVCAARCAEWRRMNRRLAAGDLDAFLSAEGLRPCFDAHV 204

Query: 165 KRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
               GPC G I+ E Y   V   +KFLSG +     ++   M+ A  + D+E A   + R
Sbjct: 205 GLGPGPCCGRITPEGYRRNVERIEKFLSGSHAEFVRELTDEMHAAAAELDFERAARMKAR 264

Query: 225 LAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281
           +  ++ + +   ++  R    D   +   + +A +       G+      F L    +  
Sbjct: 265 IDTVNSLTDRQHAVSARNLDADVVGIAREETIAGVHVFMVREGRIINGNEFVLDKGRDIP 324

Query: 282 NAQILSYFLRQFYT-DKPCPENILLSEEAEETSLLEISFF----KQYGYKVKITVPKQGE 336
           +  +L  FL ++Y      P  +++  E E+   +E          +G +V+ITVP++GE
Sbjct: 325 DENLLHDFLLRYYDATTSIPREVIVDCELEDAEAVEGWLTGKLASVHGARVRITVPRRGE 384

Query: 337 KRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392
           K +++  A  NA    +R   +    +      L       AL   P RIE +D S I G
Sbjct: 385 KSELLALARQNAGHTLNRYKVRTNYEDKRVNAALLQLESALALDGPPMRIECFDISTIHG 444

Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452
              V  MVV  +     NQYR+F +    +   +D   M+ V+ RR+             
Sbjct: 445 SYTVASMVVFTDGRPDTNQYRRFKIKT-PLDEANDFLSMKEVIGRRY-----------AP 492

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
            +  +  F   PD++ILDGG  QL+A       + +++ I +  +AK  +     E F  
Sbjct: 493 ERMADERFGKKPDLLILDGGLPQLNAVLDQFADMGIDD-IPVCGLAKRDE-----ELFVP 546

Query: 513 KKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570
            +    +VL      LY ++ +RDE+HRFAI  HR+ R K    S LD++ G+GP+RK+ 
Sbjct: 547 WQSTGPVVLPGGSASLYLVKHVRDESHRFAIAFHRELRGKGMTKSVLDDVAGLGPVRKKA 606

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           LL++ G    +  +S + + ++  + +++A +++   
Sbjct: 607 LLKAMGGFTRLRAASLDDILAVRAVPEEVAREVFAVL 643


>gi|331701134|ref|YP_004398093.1| UvrABC system protein C [Lactobacillus buchneri NRRL B-30929]
 gi|329128477|gb|AEB73030.1| UvrABC system protein C [Lactobacillus buchneri NRRL B-30929]
          Length = 610

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/609 (28%), Positives = 280/609 (45%), Gaps = 43/609 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M DI G+++YVGKA NL+ R++SY   ++H  +   ++S+I +  + V  +
Sbjct: 13  LPDMPGCYLMKDINGKIIYVGKAKNLKNRVRSYF-KSSHEGKTARLVSEIADFEYIVVSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           + EA LLE  +I++ +P FNI L+     +PYI IT+  + P +          G YFGP
Sbjct: 72  DKEAFLLEITLIQKHRPYFNIKLKQGNGGYPYIKITN-ERDPQIKIVNTLLKDGGFYFGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +V A E+T+N LQ+ + LR C         RPCL + + +C G C   +  E Y + +
Sbjct: 131 YPNVYAAEETVNFLQKVYPLRRCNGFQ----NRPCLYYHMGQCLGACFKVVPEETYAKQI 186

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241
              K FL+G   + K+ +   M +A  K +YE A   RD +  +         I      
Sbjct: 187 KRIKSFLNGNVSHAKQMLTTRMEKAAAKMEYERAAEIRDLIKYIEITVEKQKIISTDNTP 246

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D F+ Y +K    IQ  F    +             +     +          ++  P+
Sbjct: 247 RDIFNYYMDKGWLSIQVFFIRQSRLMKREKRLFPIIDDPEEEMVSFISQFYKQKNQILPK 306

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLS 357
            IL+ +      +            V +  P++G+KR ++E A  NA             
Sbjct: 307 EILVPKSLPTDVIS------HVVEDVPVRTPQRGQKRDLLEMAGKNAQMVLEEKFRLLEL 360

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            E      +K+ T    +     +IE +D+SHI G   V  MVV  +    KN YRK+ L
Sbjct: 361 DESKTTGAMKELTDAMGIA-PGHKIEAFDHSHIQGADLVSAMVVFVDGQPNKNLYRKYKL 419

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V   D+ A  + V+ RR+++L+K                   PD++++DGG  Q++
Sbjct: 420 KT--VDHADEAASTKEVIRRRYTRLLKEH--------------AEMPDLILMDGGVIQMN 463

Query: 478 AAQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           A + V + +L +   I +  + K        +  F      L L+ +    Y +QR++DE
Sbjct: 464 AVKDVLVNELGL--NIPVGGMVKNTHHQTA-DLLFGDNDTPLQLDPKSQGFYLLQRIQDE 520

Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            HRFAIT H K   K +  S LD I G+GP  +  LL+ FG+++ IS +  E L  + GI
Sbjct: 521 VHRFAITYHHKVHTKNSLSSRLDSIAGVGPKTRNKLLRKFGSLRKISNAPIEELRQL-GI 579

Query: 596 SKKIACKIY 604
           S+ +A  I 
Sbjct: 580 SETVAQTIK 588


>gi|302344815|ref|YP_003813168.1| excinuclease ABC, C subunit [Prevotella melaninogenica ATCC 25845]
 gi|302149396|gb|ADK95658.1| excinuclease ABC, C subunit [Prevotella melaninogenica ATCC 25845]
          Length = 638

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/625 (26%), Positives = 310/625 (49%), Gaps = 50/625 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA NL++R+ SY H      +   ++S+I++I ++V  
Sbjct: 46  NMPEKPGTYQFYDNEKTIIYVGKAKNLKRRVSSYFHKEVDRFKTKVLVSKIHDISYSVVK 105

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALL+E  +IK+ KP++N+LL+D K++P I +T+    P ++K R  +   G+++GP
Sbjct: 106 TEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRTINKRYGTFYGP 164

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ +++ +  R+C      + + + + +PCL + +  C  PC  + S E 
Sbjct: 165 YSHIGSMYAILDIIKKVYKPRTCRFPITKEGIEQGKYKPCLEYHLHNCGAPCINKQSYED 224

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A++ L G   ++++ + + M +   +  +E A + + R  AL +    ++ + 
Sbjct: 225 YQEAIKQAREVLKGNTRDVQKLLKKKMEKYAEELRFEEAELCKQRYLALDNFAAKSEIVS 284

Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +    ++       +  A I       G    + T+  K   + ++ ++L+  + +  
Sbjct: 285 HTITDVDVFTIVSDDTRKNAFINYIHVTNGAINQSFTYEYKRKLDESDEELLNEAIPEIR 344

Query: 295 TD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                  + I++  E +                 +  +P++G+K  ++E + +NA +   
Sbjct: 345 ERFNSTAKEIIVPFELDFK-----------VKGAEFFIPQRGDKHHLLELSEMNAKQYKF 393

Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
            +L        E     ++++   K  L  +P  IE +DNS+I G  AV   +V      
Sbjct: 394 DRLKQTEKLNPEQKQTRLMRELQDKLKLSKLPYHIECFDNSNISGSDAVAGCIVYKGMKP 453

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K  YRK+N+    V   DD A M+ V+ RR+S++ +                   PD++
Sbjct: 454 SKKDYRKYNIKT--VVGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLI 497

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           I DGGKGQ+   + V++   +   I I  +AK  +     E  F    + + L+++  + 
Sbjct: 498 ITDGGKGQMEVVREVVEDE-LHLNIPIAGLAKDDRHRT-NELLFGFPQQTIALDIKGELF 555

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             + +++DE HR+AI+ HR +R KA  +S LD+I GIGP  K  LL+   TVK I  +  
Sbjct: 556 KVLTQIQDEVHRYAISFHRDKRSKAQLHSELDDIKGIGPKTKDALLKKLKTVKRIKEADL 615

Query: 587 ETLASIEGISKKIACKIYNHFHKNT 611
           + L  + G SK  A  +YN+FH N 
Sbjct: 616 QELTEVIGASK--ATIVYNYFHANQ 638


>gi|329926907|ref|ZP_08281310.1| excinuclease ABC, C subunit [Paenibacillus sp. HGF5]
 gi|328938894|gb|EGG35267.1| excinuclease ABC, C subunit [Paenibacillus sp. HGF5]
          Length = 667

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 158/657 (24%), Positives = 269/657 (40%), Gaps = 64/657 (9%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +  G ++YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 25  LPDQPGCYLMKNHEGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQMLVSEIRDFEYIVTGS 83

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK  +PRFN+LL+DDK++PY+ IT++   P L   R     +  YFGP+
Sbjct: 84  NMEALILECNLIKTHQPRFNVLLKDDKTYPYLKITNEE-HPRLEVTRRVLKDKAKYFGPY 142

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++T   L R + LR C           CL + + +C  PC  E+    Y +   
Sbjct: 143 PNAYAAQQTKKLLDRMYPLRKCGVMPKE----VCLYYHMGQCLAPCVKEVPKSAYEQITG 198

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E   FLSGG+  +K+++ R M +A     +E A   RD++  +  +              
Sbjct: 199 EITSFLSGGHEEIKKELQRKMQEAAEDLYFERAKELRDQIIHIDTLMEKQKITTTDTRDR 258

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  +   G+                       F+ Q+Y+D P    
Sbjct: 259 DVFGYAVDKGWMCVQILYMRQGKMVQRNKSVF--PFYGDAHSDFMSFIAQYYSDNPALPQ 316

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
            +L          E       G          GE  +  ++   +A     + L    + 
Sbjct: 317 EILLPGPLLAE--EAGSETAIGSAGDQGARNAGEAAETEKKLTTDASEEQREILVQAQAE 374

Query: 363 QMILKDFTKKFALP------------------HIPKRIEIYDNS-----------HIMGC 393
           Q                                        DN+                
Sbjct: 375 QAEAAGLVDAAGGAAALQEWLGVKVHVPQRGLKKQMVGMASDNAKVSLDEKFRLIERDEE 434

Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL--------ERRFS----- 440
                   +GE   +++  R      ++++  +  + M +           R++      
Sbjct: 435 RTSVAAANLGEVIGLQSLNRIEAFDNSNIQGANPVSAMVVFTNGKPDKKEYRKYKIRTVQ 494

Query: 441 ---QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITIIS 496
                    E +    ++        PD++++DGGKGQ+SAA  VL+ +L +   + +  
Sbjct: 495 GPDDYDTMREVIRRRYERVLKENLPLPDLIVVDGGKGQISAAIDVLENELGL--FVPVCG 552

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YS 555
           + K  K     +       E + L       Y +QR++DE HRFAI+ HR++R K+   S
Sbjct: 553 LVKDAKHKT-TQLMVGDPPEPVSLPRDSQEFYLLQRIQDEVHRFAISFHREQRGKSMVTS 611

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            LD I GIG  R+++LL+ FG+VK I  +S E    +  I +K+A +I N   +  S
Sbjct: 612 KLDSIPGIGEKRRKMLLKHFGSVKKIKEASVEDFKPL-SIGEKLATEILNALREEES 667


>gi|293374137|ref|ZP_06620471.1| excinuclease ABC, C subunit [Turicibacter sanguinis PC909]
 gi|292647240|gb|EFF65216.1| excinuclease ABC, C subunit [Turicibacter sanguinis PC909]
          Length = 593

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 293/613 (47%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D  G+V+YVGKA  L+ R+KSY     H  +   ++ +I +  + +T +
Sbjct: 12  LPMNPGCYLMKDAKGQVIYVGKAKRLKNRVKSYFIGT-HNGKTARLVREIVDFEYIITSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E+EAL+LE N+IK+  P++NI+L DDK +PYI IT+    P L   R      G YFGP+
Sbjct: 71  ELEALVLEINLIKKYDPKYNIMLTDDKHYPYIKITN-EVHPRLVTTRKIKKDGGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +TI  L + + LR C         + CL + I +C  PC  +I+ E Y  ++ 
Sbjct: 130 PNARAANETIRLLNKLYPLRKCHTIP----QKVCLYYHIHQCLAPCEFKITPEDYKPYIE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FL G   ++K+ +   M +A  K ++E A  +RD +A +           N     
Sbjct: 186 QITRFLKGDYSDVKKDLVSRMEEAAEKLEFERAKEYRDLIANIEATVEKQKMTMNDFIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  Y    L C+Q  F   G+             E T   +L++  R +  +   P+ 
Sbjct: 246 DVFGYYTMNGLICVQVFFIRQGKVIEREVSIFD-GIEDTEEAVLTFIGRFYQGNNLKPKE 304

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I +     +  L ++   K          PK G+K++++E A+ NA  + ++KL      
Sbjct: 305 IFIPATLNQELLSQLLDIKVIV-------PKIGDKKELVELAMKNAEMALSEKLQLIEKQ 357

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    RIE +DNSH  G  AV  MVV  +    K QYRK+ + 
Sbjct: 358 EERTLKAVERLGEVLNIPTP-HRIEAFDNSHHQGMDAVSAMVVFTDGRPDKKQYRKYKIQ 416

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD   MR V+ RR+ +++  +                 PD++++DGGKGQ++ 
Sbjct: 417 TT--SDGDDYQAMREVIYRRYFKVLNED--------------LPAPDLIVIDGGKGQVAI 460

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           AQ VL  LN+   I ++ + K  K          +  E + L  R  +   + R++DE H
Sbjct: 461 AQEVLSSLNMT--IPVVGLVKDEKHRTSF-LLDGRDMEEIKLPTRSNVFQLLTRIQDEVH 517

Query: 539 RFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RF I  H +  +K+   S LDEI G+GP RKRLL+Q+FGT++ +  +  +    + G   
Sbjct: 518 RFVIGFHHQSAQKRTLTSILDEIPGVGPKRKRLLIQNFGTLERMVEADEQEYLKL-GFPA 576

Query: 598 KIACKIYNHFHKN 610
           ++  +I     + 
Sbjct: 577 EVIRRIKTFIAEE 589


>gi|261415633|ref|YP_003249316.1| excinuclease ABC, C subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372089|gb|ACX74834.1| excinuclease ABC, C subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327821|gb|ADL27022.1| UvrABC system protein C [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 623

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/619 (28%), Positives = 289/619 (46%), Gaps = 38/619 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITH--MISQINNIRFTV 62
           ++P  PGVY M +  G+++Y+GKA  L+ R+ SY   ++H        M+  I +I + +
Sbjct: 14  ELPLLPGVYIMKNAQGKIIYIGKAKVLKNRVSSYFDGSDHAGHRAATLMLPYIRDIEWII 73

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LEAN+I++  P++N+LL+DDK FPY+  +     P L+  R        Y+
Sbjct: 74  TESETEALILEANLIRKHTPKYNVLLKDDKHFPYLAFSVNEPFPRLFLSRSVKKDGCLYY 133

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181
           GP+ S   + +  +   R F +R C   +  +R  RPCL + I RC  PC G ++ E+Y 
Sbjct: 134 GPYMSSRMIRQLQDIAARLFQIRECKLKLPLNRPVRPCLNYHIGRCGAPCAGLVTREEYQ 193

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V + +  L G   +L +   R M +A+ + D+E+A   RD + AL     H  +  + 
Sbjct: 194 KKVAQTQMLLGGKRDDLIDLWEREMLEASERMDFETAAKKRDAIQALKATSAHQKTDVSD 253

Query: 242 ----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
               +D  SL  N  +A      +  G   G   + L+   E    +I    + Q+Y D 
Sbjct: 254 ASLCVDVLSLKRNGTMAAAVIFEYRNGVLCGRRHYRLECKLEDDETEIFRQMVVQWYMDV 313

Query: 298 PCPENILLSEEAEETSLLEISFFKQ-----YGYKVKITVPKQGEKRKIIEQALINAHRSH 352
                 + ++    T + E    +Q       +KV +T P++GEK   ++ A  NA    
Sbjct: 314 EFIPGEIATDVPLPTDMSERLSIEQALASKTTHKVVLTNPQRGEKLGFLKLASANADMIL 373

Query: 353 TQKLSTEISHQMI---LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
            +  +    +  I   + +  K   L   P RIE  D SH+ G + V  +V        K
Sbjct: 374 VEMRAEVQKYSEIDSSVFELQKVLGLKKTPFRIECVDISHLSGTNTVASLVAFKNGRPDK 433

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           + YRKF +    V   DD A MR V+ RR  +L +                   PD+ + 
Sbjct: 434 SNYRKFIIKT--VTGVDDFASMREVMTRRIRRLEEEG--------------IPMPDLWVC 477

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQ+ A   +LK+L  +  + +I +AK  +     E  F    +++VL+   P L  
Sbjct: 478 DGGKGQVDATMQILKELGHDKDLPLIGLAKRLE-----EIVFPDDRKSIVLHRTSPALKL 532

Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           +Q  RDEAHRFAIT  R +RKK       ++ G+G   +  +L  + + +    +  E +
Sbjct: 533 LQNARDEAHRFAITYQRSKRKKDLEVEWLKMPGVGHETRIKILSKYKSAEAFMDAPLEDI 592

Query: 590 ASIEGI--SKKIACKIYNH 606
             + G     K+  ++  +
Sbjct: 593 IDLLGKVRGAKLREQVAEY 611


>gi|256827142|ref|YP_003151101.1| excinuclease ABC, C subunit [Cryptobacterium curtum DSM 15641]
 gi|256583285|gb|ACU94419.1| excinuclease ABC, C subunit [Cryptobacterium curtum DSM 15641]
          Length = 682

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 179/646 (27%), Positives = 300/646 (46%), Gaps = 55/646 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY   D AG+V+YVGKA  L+ R++ Y++  +   +I  ++ QI +  + V  
Sbjct: 16  SVPTLPGVYLWKDEAGQVIYVGKAKQLRARMRQYVNFQDDRAKIPLLVDQIRSFEYIVVE 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E E+L+LE N+I +  P FN   +DDKS+P+I +T     PA+   R+       YFGP
Sbjct: 76  NEYESLVLEKNLINQYSPFFNADFKDDKSYPFIALTKGDVFPAIKFTREKHRADTLYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTR----------------PCLLFQIKRCS 168
           +    A    I+ ++R   L S + S +R   R                PC    +    
Sbjct: 136 YTDSRAARNLIDIVRRIVPLCSASCSQWRQMKRIIDRDGYEAFKKNPMKPCFDCHVGLAP 195

Query: 169 GPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL 228
           G C G I+ E+Y E +    +FL G       +++ +M +A    D+E A   + RL  +
Sbjct: 196 GACCGRITPEEYEENLTRVARFLRGSRREFTRELSHDMQKAAADLDFERAGRLKARLDII 255

Query: 229 SHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI 285
             +++   ++ +     D   ++  + +  +       G+      F L   ++ ++  +
Sbjct: 256 RGLEDKQHAVVSDSLNADVIGIFREETITGVHVLMVREGRVINGNEFVLNKGTDVSDDDL 315

Query: 286 LSYFLRQFYT-DKPCPENILLSEEAEETSLLEISFFKQ----YGYKVKITVPKQGEKRKI 340
           L  FL ++Y      P  I+L +  ++   +     ++    +G +V+   P++GEKR++
Sbjct: 316 LRNFLLRYYDVATSIPREIILEKLPDDADTMGDWLTRKLANSHGARVRFAQPERGEKREL 375

Query: 341 IEQALINAHR----SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396
           ++ A  NA         +    +      L       ALP  P RIE +D S   G   V
Sbjct: 376 LDMATTNARHTLMRYMVRTNYEDKRINEALLQLESALALPEPPLRIECFDISTFHGTYTV 435

Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456
             MVV  +    K+QYR+F +  + +   +D   M+ VL RR+              +  
Sbjct: 436 ASMVVFTDGRPDKSQYRRFKIKAD-LDEANDFLSMQEVLGRRY-----------APERMA 483

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KG 515
           +  F   PD++ILDGGK QLSAA   L  + V+  I +  +AK  +     E F    + 
Sbjct: 484 DERFGRKPDLLILDGGKPQLSAAIEQLGSMGVD--IPLAGLAKRDE-----ELFVPWQES 536

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574
             +VL      LY ++R+RDE+HRFAIT HR+ R K    S LDE+ GIGP+RK+ LL+ 
Sbjct: 537 GPVVLPSGSASLYLVKRVRDESHRFAITFHRQLRGKGMTASILDEVEGIGPVRKKALLRH 596

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKI------YNHFHKNTSHT 614
           F + K + ++S E L +   +  ++A ++      YN   + T   
Sbjct: 597 FKSFKNLRQASLEDLEASRVLPVEVARELFAVLAQYNDLREETDAA 642


>gi|212704529|ref|ZP_03312657.1| hypothetical protein DESPIG_02587 [Desulfovibrio piger ATCC 29098]
 gi|212672096|gb|EEB32579.1| hypothetical protein DESPIG_02587 [Desulfovibrio piger ATCC 29098]
          Length = 621

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 182/637 (28%), Positives = 281/637 (44%), Gaps = 54/637 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
               +P  PGVY   D  G+V+YVGKA  L++R+ SY        +   M++   +I F 
Sbjct: 5   DPSSIPLSPGVYLYRDGKGQVIYVGKARILRRRVLSYFRPEGLPAKTKAMLAHAQSIEFL 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEA++IK+ +P +NI+LRDDK +    +  KH  P L   R +      Y
Sbjct: 65  TTTTEKEALLLEASLIKKYRPHYNIVLRDDKQYVLFRVNIKHPFPRLEVVRKARRDGARY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S  A  +T   L R F LR C+D   ++R RPCL   + +C  PC G +++E Y 
Sbjct: 125 FGPFTSSLAARETWKLLHRAFPLRRCSDRAMKNRVRPCLYHHMGQCPAPCMGLVTAEDYF 184

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           E V      L G    L +++   M  A    ++E A + RD++ A+        ++   
Sbjct: 185 EGVRRVCDLLQGKADPLLKELHGRMEAAAEALEFEQAAVLRDQIRAVEKTVERQATVLPG 244

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              MD   L+  +    +   F   G       F+    +     ++L  F+ Q+Y    
Sbjct: 245 GGDMDVLGLFQAERGLALGLVFVRGGAMTDGRAFYWPGLTFDDAPELLFSFVGQYYEQLT 304

Query: 299 CPENILLSEE-----------------AEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            P  ILL                     +E SLLE +  ++ G  V++  P+     +++
Sbjct: 305 PPPRILLPWLPAAVQETDGEDGGTDEAPDERSLLEQALSERRGGPVRLVAPQNPADNRLV 364

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401
           + A  NA     ++   E +   +L+   +   LP +P+RIE  D SH  G      MVV
Sbjct: 365 DVAQSNAREEARRREKLEETP--LLERLARALHLPDVPRRIECVDVSHTGGRQTRVGMVV 422

Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461
             +     +QYR + +        DD   +   + RR                    S P
Sbjct: 423 YEDGRPSPDQYRAYAMPD----GGDDYGTLYDWVARRL------------------ESGP 460

Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG------PKRSAGM---EKFFV 512
            WPD++++DGG+GQL+  +  L      +   + +IAK         R AG      F  
Sbjct: 461 PWPDLMLIDGGRGQLAVVERALNDAGKPDFFPLAAIAKARDEAGHADRRAGNVADRIFLP 520

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLL 571
            +   L L      L F+Q +RD  HRFAI  HRK R +AA S  L  + GIGP   RLL
Sbjct: 521 GRSNPLPLREGCAELLFLQNVRDATHRFAIGRHRKARGQAALSGELMRLPGIGPATARLL 580

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            ++FG+++ +  +  + L  + GI    A  ++    
Sbjct: 581 WETFGSLEAMRAAGVDDLRRLPGIGASRAALLHEKLK 617


>gi|325837424|ref|ZP_08166406.1| excinuclease ABC, C subunit [Turicibacter sp. HGF1]
 gi|325490956|gb|EGC93254.1| excinuclease ABC, C subunit [Turicibacter sp. HGF1]
          Length = 593

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 180/613 (29%), Positives = 293/613 (47%), Gaps = 43/613 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y M D  G+V+YVGKA  L+ R+KSY     H  +   ++ +I +  + +T +
Sbjct: 12  LPMNPGCYLMKDAKGQVIYVGKAKRLKNRVKSYFIGT-HNGKTARLVREIVDFEYIITSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E+EAL+LE N+IK+  P++NI+L DDK +PYI IT+    P L   R      G YFGP+
Sbjct: 71  ELEALVLEINLIKKYDPKYNIMLTDDKHYPYIKITN-EVHPRLVTTRKIKKDGGKYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +TI  L + + LR C         + CL + I +C  PC  +I+ E Y  ++ 
Sbjct: 130 PNARAANETIRLLNKLYPLRKCHTIP----QKVCLYYHIHQCLAPCEFKITPEDYKPYIE 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FL G   ++K+ +   M +A  K ++E A  +RD +A +           N     
Sbjct: 186 QITRFLKGDYSDVKKDLVSRMEEAAEKLEFERAKEYRDLIANIEATVEKQKMTMNDFIDR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F  Y    L C+Q  F   G+             E T   +L++  R +  +   P+ 
Sbjct: 246 DVFGYYTMNGLICVQVFFIRQGKVIEREVSIFD-GIEDTEEAVLTFIGRFYQGNNLKPKE 304

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I +     +  L ++   K          PK G+K++++E A+ NA  + ++KL      
Sbjct: 305 IFIPATLNQELLSQLLDIKVIV-------PKIGDKKELVELAMKNAEMALSEKLQLIEKQ 357

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      ++   +   +P    RIE +DNSH  G  AV  MVV  +    K QYRK+ + 
Sbjct: 358 EERTLKAVERLGEVLNIPTP-HRIEAFDNSHHQGMDAVSAMVVFTDGRPDKKQYRKYKIQ 416

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD   MR V+ RR+ +++  +                 PD++++DGGKGQ++ 
Sbjct: 417 TT--SDGDDYQAMREVIYRRYFKVLNED--------------LPAPDLIVIDGGKGQVAI 460

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           AQ VL  LN+   I ++ + K  K          +  E + L  R  +   + R++DE H
Sbjct: 461 AQEVLSSLNMT--IPVVGLVKDEKHRTSF-LLDGRDMEEIKLPTRSNVFQLLTRIQDEVH 517

Query: 539 RFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RF I  H +  +K+   S LDEI G+GP RKRLL+Q+FGT++ +  +  +    + G   
Sbjct: 518 RFVIGFHHQSAQKRTLTSILDEIPGVGPKRKRLLIQNFGTLERMVEADEQDYLKL-GFPA 576

Query: 598 KIACKIYNHFHKN 610
           ++  +I     + 
Sbjct: 577 EVIRRIKTFIAEE 589


>gi|303238015|ref|ZP_07324558.1| excinuclease ABC, C subunit [Prevotella disiens FB035-09AN]
 gi|302481805|gb|EFL44857.1| excinuclease ABC, C subunit [Prevotella disiens FB035-09AN]
          Length = 622

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 167/627 (26%), Positives = 306/627 (48%), Gaps = 48/627 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG YQ  D    ++YVGKA NL+ R+ SY H      +   ++S+I++I +TV  
Sbjct: 26  NLPEKPGTYQYYDKEHTIIYVGKAKNLKNRVASYFHKETDRFKTKVLVSKIHDITYTVVN 85

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALL+E  +IK+ +PR+N+LL+D K++P I +T+    P ++  R+ +   G++FGP
Sbjct: 86  SEEDALLIENQLIKQYQPRYNVLLKDGKTYPSICVTN-EYFPRIFNTRNINKRYGTFFGP 144

Query: 125 FASVDAVEKTINSLQRTFFLRSCADS-----VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   +  L++ +  R+C        + + + +PCL + I  C  PC G+ S E 
Sbjct: 145 YSHISSMYAILEILKKVYKPRTCRYPITEEGIKQGKYKPCLEYHIGNCGAPCIGKQSYED 204

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + + ++K+ L G    ++ K+   M +   +  +E A  ++ R  AL++    ++ + 
Sbjct: 205 YRQNIEDSKQILKGNTREMERKMKAKMEECAAELRFEEAEKYKQRYLALANFAAKSEIVS 264

Query: 240 NRMDCFSLYH-----NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             +    ++      N   A I       G    + TF  K   E ++A++L+  + +  
Sbjct: 265 YTIADVDVFSIINDDNNKNAFINYIHVTNGAINQSFTFEYKRKLEESDAELLNEAILEIR 324

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     +  +                +P++G+K+ ++E + +NA +    
Sbjct: 325 ERFKSTAKEIIVPFEMDFKI----------KDATFFIPQRGDKKHLLELSEMNAKQHKFD 374

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     ++K+   +  LP +P  IE +DNS+I G  AV   +V       
Sbjct: 375 RLKQAEKLNPEQKQTRLMKELQDRLKLPKLPYHIECFDNSNISGTDAVAGCIVYKGMKPS 434

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V+  DD A M+ V+ RR+ ++I+   +L              PD++I
Sbjct: 435 KKDYRKYNIKT--VEGPDDYASMQEVVRRRYKRMIEEGTSL--------------PDLII 478

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V++   +   I I  +AK   R    E  +    + + +     +  
Sbjct: 479 TDGGKGQMEVVRAVVED-KLHITIPIAGLAK-DNRHRTNELLYGFPPQTIGVPTNSELFK 536

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAI+ HR +R K+  +S LD I GIG   K  LL  F TVK I  +  +
Sbjct: 537 ILTQIQDEVHRFAISFHRDKRSKSQLHSELDSIKGIGTKTKEQLLTHFKTVKRIKEADLQ 596

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHT 614
            L +I G S+  A  ++N+FH    ++
Sbjct: 597 QLTNIIGGSR--ASLLFNYFHPTDPNS 621


>gi|227529065|ref|ZP_03959114.1| excinuclease ABC subunit C [Lactobacillus vaginalis ATCC 49540]
 gi|227351077|gb|EEJ41368.1| excinuclease ABC subunit C [Lactobacillus vaginalis ATCC 49540]
          Length = 603

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/615 (28%), Positives = 282/615 (45%), Gaps = 42/615 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +I  +++YVGKA NL+ R++SY   ++HT ++  M+S++ +    VT T
Sbjct: 13  LPDKPGCYLMKNINDQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             E+ LLE  +I++ +P FNI L+    +PYI IT+  + P              YFGP+
Sbjct: 72  NKESFLLEITLIQKHQPYFNIRLKRGTGYPYIKITN-ERDPRTMITGQVKKDGAYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ +Q+ + LR C         RPCL + + +C G C   +  E+Y E + 
Sbjct: 131 PNVYAAEETLHFIQKVYPLRRCNGYQ----NRPCLYYHMGQCLGACFKTVPREEYDEQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
             K FL+G    +K ++ + M +A    ++E A   RD+L  +         I N     
Sbjct: 187 RIKSFLNGNTATVKRRLTKQMEEAAANLEFERAAEIRDQLHYIKVTVEKQKIISNDKTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +                              +   P+ 
Sbjct: 247 DLFNFYMDKGWLSIQVFFIRQARLMKREKRLFPVVDTDVEEMTSFILQFYNRRNNVLPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           ILL        + EI         V +  P +G+KR ++  A  NA              
Sbjct: 307 ILLPHGLPNKEISEIL-------GVPVRTPVRGKKRDLMAMARENAQLSLDEKFRLLELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  +K+ T    LP    +IE +D+SHI G   V  MVV  +    K  YRK    
Sbjct: 360 TKKTTGAMKEITDALGLP-EGHKIEAFDHSHIQGADPVSAMVVFVDGEPAKKLYRK-YKL 417

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            + +   D+ A  R V+ RR+S+L+K  +                PD++ +DGG+ Q++A
Sbjct: 418 KSVINHADEAASTREVIRRRYSRLLKENK--------------PMPDMIFMDGGEIQMNA 463

Query: 479 AQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
            + VL+ +L ++  I ++ + K  K     +  F    E + LN R    Y +QR++DE 
Sbjct: 464 VKDVLENELGLD--IPVVGMVKNDKHKTA-DLLFGDHDEHINLNPRSQGFYLVQRIQDEV 520

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   + +  S LD I G+GP  +  LLQ +G++  I+ +  E + S+ GI+
Sbjct: 521 HRFAITFHRRVHARHSMASRLDAIKGVGPRTRTKLLQKYGSITKIAAAPIEDIHSL-GIN 579

Query: 597 KKIACKIYNHFHKNT 611
            K A  I      N 
Sbjct: 580 MKTAQLIKVSLQGNA 594


>gi|229496340|ref|ZP_04390060.1| excinuclease ABC subunit C [Porphyromonas endodontalis ATCC 35406]
 gi|229316918|gb|EEN82831.1| excinuclease ABC subunit C [Porphyromonas endodontalis ATCC 35406]
          Length = 604

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 177/623 (28%), Positives = 286/623 (45%), Gaps = 49/623 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PG YQ  +  G ++YVGKA NL++R+ SY    +   +   +++QI ++++ V  
Sbjct: 12  TLPLSPGCYQYYNAEGEIIYVGKAKNLRRRVSSYFQKEHTDRKTRQLVAQIVDVKYIVVA 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E +ALLLE N+IK  +P++NILL+DDKS+P I++T +   P ++  R      G Y+GP
Sbjct: 72  NESDALLLENNLIKTYQPKYNILLKDDKSYPSIVVT-REPFPRIFVTRTIDPSWGDYYGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVF-----RHRTRPCLLFQIKRCSGPCTGEISSEK 179
           + SV      +  ++  + +R+C          R +   CL + IKRC  PC G +S E 
Sbjct: 131 YTSVAMAHGMVGIIREMYKVRTCRHRFTQEAIERGKYARCLQYHIKRCEAPCEGLVSRED 190

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y+  +  A + L G    + ++    M   + +  YE A   + RLA L      +    
Sbjct: 191 YLNNIAAAVELLKGNLRQVIQQTTSRMLALSEELRYEEAGQEKARLAMLQAYSTKHIVAP 250

Query: 240 ---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
              + +D FS      +A +     H G      T   K   +     I +  + +    
Sbjct: 251 ETRHDIDVFSYEEEGPMAYVNMMQVHEGAIVRALTVEYKKAIDEEAEDIFATAITELRGR 310

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK- 355
                  ++                       IT+PKQGEK+K++E ++ N  R    + 
Sbjct: 311 YESRAKEVILPYPLGWE---------SLGHFSITIPKQGEKKKLLELSIDNVKRYKLDQL 361

Query: 356 -----LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
                L+ E   Q ++    +   LP  P+ IE +DNS++ G + V   VV       K 
Sbjct: 362 KRAEKLNPEQRVQRLMNKMIEDLHLPVAPRYIECFDNSNLQGTAPVAACVVFRNGKPSKK 421

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YRKF++    V+  DD A MR ++ERR+ +L + E                 P ++++D
Sbjct: 422 EYRKFHVKT--VEGADDLASMREIVERRYRRLQEEE--------------LPLPQLIVID 465

Query: 471 GGKGQLSAAQGVLKKLNVENR-ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           G +GQL  A   L  + +     TII +A+  +     E +F  +   L L+     L  
Sbjct: 466 GARGQLEVAVETLSAMGIGAPTTTIIGLAERME-----EVYFPGEENPLFLSRDSETLRT 520

Query: 530 IQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           + ++RDEAHRF IT HR  R K   +S LD+I+G+G   K  LL+ F +VK I  +    
Sbjct: 521 LMQIRDEAHRFGITFHRSIRSKNQIHSALDDIDGVGKQTKEALLRHFRSVKRIEAAELPE 580

Query: 589 LASIEGISKKIACKIYNHFHKNT 611
           L S+  I KK    +Y   H N 
Sbjct: 581 LESL--IGKKRGGIVYKALHSNE 601


>gi|282879093|ref|ZP_06287853.1| excinuclease ABC, C subunit [Prevotella buccalis ATCC 35310]
 gi|281298827|gb|EFA91236.1| excinuclease ABC, C subunit [Prevotella buccalis ATCC 35310]
          Length = 612

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/625 (27%), Positives = 303/625 (48%), Gaps = 48/625 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MP  PG YQ  D   +++YVGKA NL+ R+ SY       ++   ++S++ +I +TV  
Sbjct: 19  NMPGKPGSYQFYDKDHQIIYVGKAKNLKNRVSSYFRKEVDRYKTKVLVSKVWDITYTVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE ++IK+  PR+N+LL+D K++P I +T K  +P ++K R      G+Y+GP
Sbjct: 79  TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICVT-KEYLPRIFKTRRIDRRFGTYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ +  +   +  +++ +  R+C      + + + + +PCL + I  C  PC G+ + E 
Sbjct: 138 YSQITIMYSLLELIKKLYKPRTCRFPITPEGISQGKYKPCLEYHIHNCKAPCVGKQTHEN 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A + L G    + + + + M +   +  +E A   + +   L++    ++ + 
Sbjct: 198 YHENIAQACEILKGNTREVSKILYQQMLKKAEELKFEEAEELKQKYEMLNNFVAKSEVVS 257

Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           N +    ++       K  A I       G    + TF  K   + T+ ++L   +++  
Sbjct: 258 NTIQDLDVFTLTDDDQKKNAFINYIHVKNGTINQSFTFEYKRKLDETDEELLITAIQEIR 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           +        ++       SL                +P++G+K+ +++ + +N  +    
Sbjct: 318 SRFKSKAKEIIVPFEINWSLN----------NATFFIPQRGDKKHLLDLSEMNGKQYKFD 367

Query: 355 K------LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +      L+ E     ++K+   K  LP +P  IE +DNS+I G  AV   +V       
Sbjct: 368 RLKRSEKLNPEQKQTRLMKELQTKLKLPKLPYHIECFDNSNISGTDAVAGCIVFKGMKPS 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V   DD A M+ V+ RR+S++ + +                 PD++I
Sbjct: 428 KKDYRKYNIKT--VSGPDDYASMQEVVRRRYSRMTEEQ--------------APLPDLII 471

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + VL+   +  +I I  +AK  +     E  F    + + L     + +
Sbjct: 472 TDGGKGQMEVVREVLED-ELHLQIPIAGLAKNDRHRT-NELLFGFPPQVVGLKADSELFH 529

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +  ++DE HR+AIT HR +R K A +S LD+I GIGP  K  LL++  +VK I  S  E
Sbjct: 530 LLTHIQDEVHRYAITFHRDKRSKNALHSELDDIKGIGPKTKEQLLKALKSVKRIKDSDLE 589

Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612
           TL  I  I +  A  I+NHFH N  
Sbjct: 590 TLTEI--IKEAKAKIIFNHFHPNNP 612


>gi|229823237|ref|ZP_04449306.1| hypothetical protein GCWU000282_00535 [Catonella morbi ATCC 51271]
 gi|229787403|gb|EEP23517.1| hypothetical protein GCWU000282_00535 [Catonella morbi ATCC 51271]
          Length = 604

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/617 (26%), Positives = 300/617 (48%), Gaps = 43/617 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M D A ++LYVGKA NL+ R++SY    + T + T ++S+I++    
Sbjct: 22  KLKLLPDLPGCYLMKDAADQILYVGKAKNLKNRVRSYFRGAHDT-KTTKLVSEIDHFEII 80

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T +  EALLLE N+I++ KP FNI L++   +PY+ IT K + P L    + +   G Y
Sbjct: 81  ITNSNKEALLLEINLIQQYKPPFNIRLKEGTMYPYLKIT-KERHPQLIITSNVTKDGGLY 139

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF +V A  +T   L R + L        ++  R C  + + +C GPC  E++ + Y 
Sbjct: 140 FGPFPNVGAATQTQQLLHRVYPL----RRCGKNEKRACFYYHLGQCIGPCDHEVTKDMYE 195

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           + + + K+F +G    +  ++   M  A  + D+E A  +RD+L  +         +   
Sbjct: 196 QQIQKIKQFFNGDIQPIMTQLKDKMQAAAERLDFEQAADYRDQLQYIETTIERQIIMSQD 255

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           Y+  D F+    +    IQ      G             ++                +  
Sbjct: 256 YDNTDVFAYDFQRGWISIQVFMLRQGSILKREAAIYPAYTDPDEELTTFIARFYQEENHL 315

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS- 357
            P+ IL+ E+ ++  L ++         + I+ P++G+K+ +++    N+  +  ++L+ 
Sbjct: 316 LPKAILVPEDVDKDLLSQVI-------SIPISTPQRGKKKSMLDLCAKNSQLALNERLNL 368

Query: 358 ---TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                   + + +D      +P     IE +D+S+I G   V  MVV  E    +  YRK
Sbjct: 369 LDIQAQQTRGVSEDLAAALGIPLAYH-IEAFDHSNISGTGLVSGMVVYKEGKPDRKSYRK 427

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +  +     ++ A  + V+ RR+S+L++ E+ L              P+++++DGGK 
Sbjct: 428 FKIKES--NQTNEFAHTQEVIRRRYSRLLREEQPL--------------PNLILMDGGKV 471

Query: 475 QLSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           Q+ AA+ V++ +L +   I +  + K  K             E + L+ + P+ ++IQR+
Sbjct: 472 QVRAARQVIEKELGLS--IPVAGMVKDDKHRTAS-LMNGYSEELVELDRQSPVFHYIQRI 528

Query: 534 RDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           ++E HR+AI+ HR+ R K  + S LD I G+G + +  LL+ F ++K +  +S E  A +
Sbjct: 529 QEEVHRYAISYHRQVRSKQQFASKLDAIPGVGKVTRTKLLKHFKSLKAMKEASIEDYAKL 588

Query: 593 EGISKKIACKIYNHFHK 609
            G+  ++A +I  +  K
Sbjct: 589 -GVRAELAERIIAYLSK 604


>gi|288800536|ref|ZP_06405994.1| excinuclease ABC subunit C [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332749|gb|EFC71229.1| excinuclease ABC subunit C [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 616

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 176/625 (28%), Positives = 295/625 (47%), Gaps = 48/625 (7%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + MPE PG YQ  D    ++YVGKA  L+ R+ SY H      +   ++S+I+NI +TV 
Sbjct: 18  QSMPEKPGSYQFYDENNVIIYVGKAKRLKSRVSSYFHKEVDRFKTKVLVSKIHNISYTVV 77

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE +ALLLE ++IK+  PR+N+LL+D K++P I +T     P ++K R  +   G+YFG
Sbjct: 78  NTEEDALLLENSLIKKYTPRYNVLLKDGKTYPSICVT-HEYFPRIFKTRTINHKTGTYFG 136

Query: 124 PFASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           PF +V A++  +  +      R+  L      +  ++ + CL + I  C GPC G+ + E
Sbjct: 137 PFTNVTALKSLLELITKIYKPRSCQLPLTPQGIANNKFKSCLEYHIHNCLGPCIGKQTME 196

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E + +AK+ L G        +   M Q   +  +E A   + +   ++     ++ +
Sbjct: 197 DYNEKIAQAKEILKGNVRKTSAVLYEKMMQLAEEMRFEEAQELKKQYELIASFVAKSEVV 256

Query: 239 YNRMDC-----FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            + +        + + N+  A I       G    + T+  K     TN ++L   + + 
Sbjct: 257 SHTIRNVDVFSITYHDNEKTAFINYIHVKNGTINQSFTYEYKQKVNETNEELLVSAILEI 316

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                     ++     +  L               TVP++G+K+K++E + +N  +   
Sbjct: 317 RNRFASEAQEIIVPFEIDWQLT----------NAYFTVPQRGDKKKLLELSEMNGKQYKF 366

Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
            ++        E  +  I+K+      L  +P  IE +DNS+I G +AV   VV      
Sbjct: 367 DRMKQAEKLNPEQKYTRIMKELQNHLQLSKLPYHIECFDNSNISGTNAVAGCVVFKGMKP 426

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K+ YRK+N+    V   DD A M+ V+ RR+ ++I   + L              PD++
Sbjct: 427 SKSDYRKYNIKT--VVGPDDYASMQEVVYRRYKRMIDEGKPL--------------PDLI 470

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           I DGGKGQ+S  + V+ +  +  +I I  +AK        E  F      + L     + 
Sbjct: 471 ITDGGKGQMSVVREVI-EGQLHLQIPIAGLAKDNHHRT-NELLFGDPPIVIGLKNNSELF 528

Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             + R++DE HR+AI+ HR +R K A +S LD I G+G   K  L+  F +VK I  +S 
Sbjct: 529 LALMRIQDEVHRYAISFHRDKRSKIALHSELDNIKGVGTKTKETLIAQFKSVKKIKTTSL 588

Query: 587 ETLASIEGISKKIACKIYNHFHKNT 611
           E L  + G SK  A  ++NHF++  
Sbjct: 589 EQLTEVLGASK--AAIVFNHFNEKE 611


>gi|261409219|ref|YP_003245460.1| excinuclease ABC subunit C [Paenibacillus sp. Y412MC10]
 gi|261285682|gb|ACX67653.1| excinuclease ABC, C subunit [Paenibacillus sp. Y412MC10]
          Length = 667

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 158/655 (24%), Positives = 273/655 (41%), Gaps = 60/655 (9%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +  G ++YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 25  LPDQPGCYLMKNHEGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQMLVSEIRDFEYIVTGS 83

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK  +PRFN+LL+DDK++PY+ IT++   P L   R     +  YFGP+
Sbjct: 84  NMEALILECNLIKTHQPRFNVLLKDDKTYPYLKITNEE-HPRLEVTRRVLKDKAKYFGPY 142

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++T   L R + LR C           CL + + +C  PC  E+    Y +   
Sbjct: 143 PNAYAAQQTKKLLDRMYPLRKCGVMPKE----VCLYYHMGQCLAPCVKEVPKSAYEQITG 198

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E   FLSGG+  +K+++ R M +A     +E A   RD++  +  +              
Sbjct: 199 EITSFLSGGHEEIKKELQRKMQEAAEDLYFERAKELRDQIIHIDTLMEKQKITTTDTRDR 258

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPE 301
           D F    +K   C+Q  +   G+                       F+ Q+Y+D P  P+
Sbjct: 259 DVFGYAVDKGWMCVQILYMRQGKMVQRNKSVF--PFYGDAHSDFMSFIAQYYSDNPALPQ 316

Query: 302 NILLSEEAEETSLLEI--------------------------SFFKQYGYKVKITVPKQG 335
            ILL                                         ++    +     +Q 
Sbjct: 317 EILLPGPLLAEEAGSETATGSAGEQGARNAGEAAETEKKLTTDISEEQHEVLVQAQAEQA 376

Query: 336 EKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395
           E   +++ A   A       +   +  + + K      +        E +          
Sbjct: 377 EAAGLVDAAGGAAALQEWLGVKVHVPQRGLKKQMVGMASDNAKVSLDEKFRLIERDEERT 436

Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL--------ERRFS------- 440
                 +GE   +++  R      ++++  +  + M +           R++        
Sbjct: 437 SVAAANLGEVIGLQSLNRIEAFDNSNIQGSNPVSAMVVFTNGKPDKKEYRKYKIRTVQGP 496

Query: 441 -QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITIISIA 498
                  E +    ++        PD++++DGGKGQ+SAA  VL+ +L +   + +  + 
Sbjct: 497 DDYDTMREVIRRRYERVLKENLPLPDLIVVDGGKGQISAAIDVLENELGL--FVPVCGLV 554

Query: 499 KGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPL 557
           K  K             E + L       Y +QR++DE HRFAI+ HR++R K+   S L
Sbjct: 555 KDAKHKTAQ-LMVGDPPEPVSLPRDSQEFYLLQRIQDEVHRFAISFHREQRGKSMVTSKL 613

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           D I GIG  R+++LL+ FG+VK I  +S E    +  I +K+A  I N   +  S
Sbjct: 614 DSIPGIGEKRRKMLLKHFGSVKKIKEASVEDFKPL-SIGEKLATDILNALREEES 667


>gi|325268315|ref|ZP_08134948.1| excinuclease ABC subunit C [Prevotella multiformis DSM 16608]
 gi|324989457|gb|EGC21407.1| excinuclease ABC subunit C [Prevotella multiformis DSM 16608]
          Length = 625

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/622 (25%), Positives = 307/622 (49%), Gaps = 48/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D+   ++YVGKA NL++R+ SY H      +   ++S+I++I ++V  
Sbjct: 35  NMPEKPGTYQFYDVEHTIIYVGKAKNLKRRVSSYFHKEVDRFKTKVLVSKIHDISYSVVN 94

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALL+E  +IK+ KP++N+LL+D K++P I +T+    P ++K R+ +   G+++GP
Sbjct: 95  TEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRNINKRYGTFYGP 153

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ +++ +  R+C      + + + + +PCL + +  C  PC  + S E 
Sbjct: 154 YSHISSMYAILDIIKKVYKPRTCRFPITKEGIEQGKYKPCLEYHLHNCGAPCIDKQSYED 213

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A++ L G    ++  + + M +   +  +E A + + R  AL +    ++ + 
Sbjct: 214 YQEAIRQAREILKGNTREVQNMLKQQMEKYAEELRFEEAELCKQRYMALDNFAAKSEIVS 273

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +    ++   +      A I       G    + T+  K   + T+ ++L+  + +  
Sbjct: 274 HTITDVDVFTIIDDDTRKNAFINYIHVKNGAINQSFTYEYKRKLDETDEELLNEAIPEIR 333

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++                      +  +P++G+K  ++E + +NA +    
Sbjct: 334 ERFNSTAKEIIVP----------FALDFKVKDAEFFIPQRGDKHHLLELSEMNAKQYKFD 383

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     ++++  +K  LP +P +IE +DNS+I G  AV   +V       
Sbjct: 384 RLKQAEKRNPEQKQTRLMRELQEKLKLPKLPYQIECFDNSNISGTDAVAGCIVYKGMKPS 443

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           +  YRK+N+    V   DD A M+ V+ RR+S++ +                   PD++I
Sbjct: 444 RKDYRKYNIKT--VTGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLII 487

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V++   +   + I  +AK  +     E  +    + + L+++  +  
Sbjct: 488 TDGGKGQMEVVRAVIED-ELHLHVPIAGLAKDDRHRT-NELLYGFPPQTIGLDIKGELFK 545

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAI+ HR +R K+  +S LD I GIGP  K LLL+   +VK I  +  +
Sbjct: 546 VLTQIQDEVHRFAISFHRDKRSKSQLHSELDNIKGIGPKTKNLLLKKMKSVKRIKDADSQ 605

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            L  I G SK     +YN+FH 
Sbjct: 606 ELIDIVGTSKG--NIVYNYFHN 625


>gi|312128881|ref|YP_003996221.1| excinuclease abc, c subunit [Leadbetterella byssophila DSM 17132]
 gi|311905427|gb|ADQ15868.1| excinuclease ABC, C subunit [Leadbetterella byssophila DSM 17132]
          Length = 602

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 172/614 (28%), Positives = 275/614 (44%), Gaps = 38/614 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PG+Y+  +  G ++YVGKA NL+ RI SY H+ +    +   ++  I+++ +T+ 
Sbjct: 12  HLPTEPGIYKYFNADGEIIYVGKAKNLKNRISSYFHNYDRADRKTRKLVESIHHLEYTIV 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI-QGSYF 122
            TE +ALLLE N+IK  +P++NILLRDDK++PYI +T   + P +   R      +G  +
Sbjct: 72  PTEWDALLLENNLIKEHQPKYNILLRDDKTYPYICVT-HERFPRVIFTRRIEDRSRGRMY 130

Query: 123 GPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           GP+ S   +   ++   + + +R+C      ++V   + + CL + I  C GPC G  S 
Sbjct: 131 GPYVSAKPMYALLDMFSQLYTIRTCKYQLSKENVEAGKFKVCLEYHIGNCKGPCEGLQSE 190

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E+YM  + +    L G     K      M  A  +  +E A   + +L  L + Q     
Sbjct: 191 EEYMHEIEQVHDILKGNLGPAKSYFQERMEAAAGRLAFEEAHKLKSKLEFLENYQAKATV 250

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                   D F++  ++  A +       G    T T  +K     T+ +ILS  + +  
Sbjct: 251 VTPTIKDADVFTIQSDETAAYVNYLKIMNGSIISTQTMEVKKRLNETDEEILSIIMLELR 310

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           T        ++S    +                      +   R ++      A +    
Sbjct: 311 TKYESTAREIISNLDPDIDFKA---TITVPQTGDKKKLVEMSLRNVVFYRHEKAEKEAIT 367

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           K         +L    +   LP +P+ IE +DNS+I G + V  MV           YR 
Sbjct: 368 KSGNANKRDRVLIKMKQDLHLPSLPRHIECFDNSNIQGTNPVSAMVCFINGQPSPKNYRH 427

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +   P  V+  DD A MR V+ RR+++L++              S    PD++I+DGGKG
Sbjct: 428 YI--PRTVEGPDDFATMREVVGRRYTRLVE--------------SGSPLPDLIIVDGGKG 471

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QLSAA   LK + +  ++ II IAK  +     E +F +    + ++ +   L  IQR R
Sbjct: 472 QLSAACEALKSIGIYGKVPIIGIAKRLE-----EIYFPEDSLPIYIDKKSETLQLIQRCR 526

Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRF IT HR RR K    S L+   GIG      +L  F T+  I  +S E L  + 
Sbjct: 527 DEAHRFGITHHRNRRSKNFLISSLESAPGIGKTTATKVLSHFKTIGNIKAASEEELIQVL 586

Query: 594 GISKKIACKIYNHF 607
           G  K  A ++    
Sbjct: 587 G--KDKARRVREFL 598


>gi|282880579|ref|ZP_06289286.1| excinuclease ABC, C subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281305682|gb|EFA97735.1| excinuclease ABC, C subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 613

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 172/626 (27%), Positives = 310/626 (49%), Gaps = 50/626 (7%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +PE PG YQ  D  G ++YVGKA NL++R+ SY        +   ++S+I+NI +TV 
Sbjct: 18  DSIPERPGSYQFFDKEGNIIYVGKAKNLKRRVSSYFLKEVDRFKTKVLVSKIHNITYTVV 77

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE +ALLLE ++IK+  P++NILL+D K++P I IT+   +P + K R      GSYFG
Sbjct: 78  NTEEDALLLENSLIKKYNPKYNILLKDGKTYPSICITN-EWLPRIIKTRQIRKGNGSYFG 136

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSV-----FRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+  +  +   ++ + + +  R+C   +        + R CL + I  C  PC  + S E
Sbjct: 137 PYTQISHLYAVLDVINKIYKPRTCTFPITPAGVKEGKYRACLKYHIGNCLAPCIAKQSHE 196

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            YM+ + +A++ L G    +++ + + M + + +  +E A I +D+   L+   + ++ +
Sbjct: 197 DYMQNIEQAREILKGNTREVRDILYQMMLKKSEELKFEEAQILKDKYDILNTFVSKSEVV 256

Query: 239 YNRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
              +    ++          A +       G    + T   K+  E T  +IL   +++ 
Sbjct: 257 SYTIKDVDVFTLTEDEGKKTAYVNYMHVKNGTINQSFTIEYKSKIEETKEEILITAIQEL 316

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
            +            E++   L+       + +    TVP++G+K+ +++ + +NA +   
Sbjct: 317 RSR----------FESKAKELIVPFDINWHLHDCIFTVPQRGDKKHLLDLSEMNAKQYKF 366

Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
            +L        E     ++K+   +  LP +P  IE +DNS+I G +AV   VV      
Sbjct: 367 DRLKQAEKLNPEQRQTRLMKELETQLNLPTLPFHIECFDNSNISGTNAVAGCVVFKGLKP 426

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K  YRK+N+    V+  DD A M+ V+ RR+ ++I+ +                 P+++
Sbjct: 427 SKQDYRKYNIKT--VEGPDDYASMKEVVRRRYQRMIEEQ--------------TPLPNLI 470

Query: 468 ILDGGKGQLSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           I DGGKGQ+   + V++ +L +   I I  +AK   R    E  +    + + +     +
Sbjct: 471 ITDGGKGQMEVVRQVVEDELGLH--IPIAGLAK-DNRHRTNELLYGFPPQVIGMKADSEL 527

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            + + R++DE HR+AIT HR +R K A +S LD I GIG   ++ L+++  +VK I  + 
Sbjct: 528 FHILTRIQDEVHRYAITFHRDKRSKQALHSELDNIKGIGIQTQKQLMKALKSVKKIKEAD 587

Query: 586 PETLASIEGISKKIACKIYNHFHKNT 611
            +TL +I  I K  A  I+ +FH+  
Sbjct: 588 LQTLTNI--IGKSKANIIFQYFHEKE 611


>gi|288801785|ref|ZP_06407227.1| excinuclease ABC subunit C [Prevotella melaninogenica D18]
 gi|288335827|gb|EFC74260.1| excinuclease ABC subunit C [Prevotella melaninogenica D18]
          Length = 611

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/625 (26%), Positives = 308/625 (49%), Gaps = 50/625 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA NL++R+ SY H      +   ++S+I +I ++V  
Sbjct: 19  NMPEKPGTYQFYDNEKTIIYVGKAKNLKRRVSSYFHKEVDRFKTKVLVSKIYDISYSVVK 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALL+E  +IK+ KP++N+LL+D K++P I +T+    P ++K R  +   G+++GP
Sbjct: 79  TEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRTINKRYGAFYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ +++ +  R+C      + + + + +PCL + +  C  PC  + S E 
Sbjct: 138 YSHIGSMYAILDIIKKVYKPRTCRFPITKEGIEQGKYKPCLEYHLHNCGAPCINKQSYED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A++ L G   ++++ + + M +   +  +E A + + R  AL +    ++ + 
Sbjct: 198 YQEAIKQAREILKGNTRDVQKLLKQEMEKYAEELRFEEAELCKQRYLALDNFAAKSEIVS 257

Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +    ++       +  A I       G    + T+  K   + ++ ++L+  + +  
Sbjct: 258 HTITDVDVFTIVSDDTRKNAFINYIHVTNGAINQSFTYEYKRKLDESDQELLNEAIPEIR 317

Query: 295 TD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                  + I++  E +                 +  +P++G+K  ++E + +NA +   
Sbjct: 318 ERFNSTAKEIIVPFELDFK-----------VKGAEFFIPQRGDKHHLLELSEMNAKQYKF 366

Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
            +L        E     ++++   K  L  +P  IE +DNS+I G  AV   +V      
Sbjct: 367 DRLKQTEKLNPEQKQTRLMRELQDKLKLSKLPYHIECFDNSNISGSDAVAGCIVYKGMKP 426

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K  YRK+N+    V   DD A M+ V+ RR+S++ +                   PD++
Sbjct: 427 SKKDYRKYNIKT--VVGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLI 470

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           I DGGKGQ+   + V++   +   I I  +AK  +     E  F    + + L+++  + 
Sbjct: 471 ITDGGKGQMEVVREVVEDE-LHLSIPIAGLAKDDRHRT-NELLFGFPQQTIALDIKGELF 528

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             + +++DE HR+AI+ HR +R K   +S LD+I GIGP  K  LL+   TVK I  +  
Sbjct: 529 KVLTQIQDEVHRYAISFHRDKRSKTQLHSELDDIKGIGPKTKDALLKKLKTVKHIKEADL 588

Query: 587 ETLASIEGISKKIACKIYNHFHKNT 611
           + L  + G SK  A  +YN+FH N 
Sbjct: 589 QELTEVIGASK--ATIVYNYFHANQ 611


>gi|183221458|ref|YP_001839454.1| excinuclease ABC subunit C [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911545|ref|YP_001963100.1| excinuclease ABC subunit C [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|229558447|sp|B0SB16|UVRC_LEPBA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229558448|sp|B0SST8|UVRC_LEPBP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|167776221|gb|ABZ94522.1| Excinuclease ABC, subunit C [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779880|gb|ABZ98178.1| UvrABC system protein C (UvrC protein; Excinuclease ABC subunit C)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 614

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/617 (27%), Positives = 295/617 (47%), Gaps = 31/617 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +   PG Y   +  G+V+YVGKA  LQ R++SY++ N    +   +  ++ ++ + 
Sbjct: 13  KIKNLGSLPGCYLWKNELGQVIYVGKALKLQSRVRSYLNPNQKDRKTRALFVELYDLDWI 72

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEA +IK+  P+FN+ L+DDK +P++ ++     P ++  R        Y
Sbjct: 73  ATGTEKEALLLEATLIKKYNPKFNVRLKDDKKYPFLCVSTSEDYPMVFLTRKVKDNGDRY 132

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           FGPF  V A   T+  + R F +R            RPCL F + RC GPC G ++ + Y
Sbjct: 133 FGPFTDVKAARDTLELIHRIFPIRKTKLKLPLPKPQRPCLNFHMGRCLGPCQGNVTKDTY 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E V E  +FL G    L   + + M  A+ K +YE A   + R+  ++ ++     +  
Sbjct: 193 SELVDEILRFLEGKKERLVADLKKAMMDASSKMEYERAGFLKQRIEKINQLREKQTVVSM 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D   +   ++   I       G+  G  +F L   S S + +  + FLR +Y + 
Sbjct: 253 DGGDEDILGISKREDEGQILILEVRGGRLEGKKSFPLTGLSFSDDEEAFTSFLRDYYLNV 312

Query: 298 PCPENILLSEEAE--ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               +++    +      +   +  +++G  +K+  P+ G K+ ++  A  NA  S T++
Sbjct: 313 TVLPSVVYLPTSAKGNYDVFLEAILEKFGTSIKLKFPEMGPKKSLLRLAEKNADLSLTER 372

Query: 356 L--STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +  +      + +K+  +K  LP +P+ IE YD SH  G   V   V+  E    K  YR
Sbjct: 373 ILATKLRDQTVAMKELQEKLNLPTLPRTIECYDISHFQGSLPVASGVMFVEGKPYKPGYR 432

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
            + +     +  +D  M+  V+ RR S L+  EE L              PD++++DGG 
Sbjct: 433 HYKMRG--YEGINDPGMIHEVIARRLSHLVNEEEPL--------------PDLIVIDGGL 476

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            QLS A      L++   I ++ +AK  +     E +F  +      +   P++  ++ L
Sbjct: 477 TQLSRAAEAANALDL-GHIPMVGLAKKRE-----EIYFPGEKHPYSFDQHSPMMRLLRNL 530

Query: 534 RDEAHRFAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDEAHRF +T  R +R+KKA  S LD+I  IG  R++ +L  F   K ++ ++ + L  +
Sbjct: 531 RDEAHRFGVTFQRLQRKKKALKSILDDIPDIGASRRKSILMYFQAKKKVTDATRQELEKV 590

Query: 593 EGISKKIACKIYNHFHK 609
           +GI   +A KI+ +   
Sbjct: 591 QGIGPVLAEKIFTNIQN 607


>gi|303325404|ref|ZP_07355847.1| excinuclease ABC subunit C [Desulfovibrio sp. 3_1_syn3]
 gi|302863320|gb|EFL86251.1| excinuclease ABC subunit C [Desulfovibrio sp. 3_1_syn3]
          Length = 661

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 180/666 (27%), Positives = 271/666 (40%), Gaps = 80/666 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
               +P  PGVY   D  GR++YVGKA  L++R+ SY        +   M++   ++ + 
Sbjct: 5   DPSTIPLTPGVYLYKDSRGRIIYVGKARILRRRVLSYFRPEGLPAKTRAMLAHAVSLEYL 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEA++IK+ +P +NI+LRDDK +    +  KH  P L   R +      Y
Sbjct: 65  TTTTEKEALLLEASLIKKHRPHYNIVLRDDKQYVLFRLNLKHPFPRLEVVRRARRDGARY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S  +  +T   + R F LR C+D   ++R RPCL   + +C  PC   I+ E Y 
Sbjct: 125 FGPFTSALSARETWKLIHRAFPLRRCSDRAMKNRVRPCLYHHMGQCPAPCMDLITPEAYH 184

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + VH+  + L G    L   +   M QA    ++E A   RD++ A+        ++   
Sbjct: 185 QAVHKVCELLQGRAEPLLRGLRAEMEQAAENLEFEKAATLRDQIRAVERTVERQAAVLPG 244

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              MD   L+       +   F   G       F+    +     ++LS F+ Q+Y+   
Sbjct: 245 GGDMDAVGLFPADKGLALGIAFVRSGAVTDGRAFYWPGLTFEDAPELLSSFVSQYYSQVT 304

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEK--------------------- 337
            P  ILL     E                  +                            
Sbjct: 305 PPPRILLPWLPPELEWEADEREGGSASSDAESAESGASSAVSEPDATAPGGDSAQGAPSG 364

Query: 338 RKIIEQAL-------------INAHRSHTQKLSTE-----------ISHQMILKDFTKKF 373
           + ++EQAL              NA  +    L+                Q IL+   K  
Sbjct: 365 KALLEQALADRRGGPVRIVAPQNASDNQLIDLAQSNAREEARRRRNQDGQSILERLAKAL 424

Query: 374 ALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRM 433
            L   P+RIE  D SH  G      +VV  +    +  YR + +      + DD A +  
Sbjct: 425 HLAGPPQRIECVDVSHTGGRQTRVGLVVFTDGQPSRPDYRTYAMPD----SGDDYATLHA 480

Query: 434 VLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRIT 493
            + RR                    S P WPD++++DGG+GQL+  +  L         +
Sbjct: 481 WVARRL------------------ESGPPWPDLLLIDGGRGQLAVVERALADAGQIGLFS 522

Query: 494 IISIAK------GPKRSAGM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           + +IAK         R AG      F   +   L L    P L F+Q +RD  HRFAI  
Sbjct: 523 LAAIAKARDERGQADRRAGNVADRIFVPGRANPLPLREGGPELLFLQNVRDATHRFAIGR 582

Query: 545 HRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR+ R+ AA S  L  + GIGP   RLL ++FG+V+ +  +S E L ++ GI    A  +
Sbjct: 583 HRRARQGAALSGELMRLPGIGPATARLLWETFGSVEAMRAASLEELRALPGIGPAKAALL 642

Query: 604 YNHFHK 609
                 
Sbjct: 643 QEKLKN 648


>gi|283769495|ref|ZP_06342391.1| excinuclease ABC, C subunit [Bulleidia extructa W1219]
 gi|283103763|gb|EFC05149.1| excinuclease ABC, C subunit [Bulleidia extructa W1219]
          Length = 591

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 184/623 (29%), Positives = 288/623 (46%), Gaps = 47/623 (7%)

Query: 1   MSSE--QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + ++  ++P  PG YQM +  G ++YVGKA +L  R+  Y     H  + T ++S I++ 
Sbjct: 6   IEAKLAELPHEPGSYQMKNKYGEIIYVGKAKDLHNRVNQYFVGT-HDFKTTKLVSNIDDF 64

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI- 117
            F VT +E EAL+LE N+IK+ +P++NI   DD S+PYI +T K K P L   RD+    
Sbjct: 65  DFIVTASEKEALILEINLIKKYRPKYNIQFIDDSSYPYIKLT-KEKYPRLLIARDTKKDK 123

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +  YFGPF  V A + T   LQ  +  R C         + CL + + +C GPC  EI+ 
Sbjct: 124 KARYFGPFPDVTAAKNTCKILQSLYPFRRCTTMP----KKLCLYYHLGQCLGPCEFEINP 179

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHN 235
           + Y +     ++FL G +  ++E +   M  A     YE A  ++  L ++        N
Sbjct: 180 KVYDDMCEGVQRFLKGDSKEVEENLYTKMMVAAENRLYEQAQEYKVMLESIHAIVRHQQN 239

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               NR D  +  +  +   I    F   Q       F          +    FL Q+Y 
Sbjct: 240 IEKDNRGDRDAFAYVVDRGYIAIAGFLVRQGIILNKEFRLRPLYGDAQEAFESFLIQYYQ 299

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----S 351
           D P    ++LS+E +  +L E+           I  P++G K ++I+  L NA +     
Sbjct: 300 DHPAARELVLSKEMDIQALKEVLDI-------PIFQPQRGYKVRLIDMCLHNAQQQLDLK 352

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                  E   Q  +KD +K          IE++DNSH  G   V   VV  +    +  
Sbjct: 353 FKSVNRQESMRQEAVKDLSKLAGKDMNR--IELFDNSHTSGSFTVASCVVYEDGQEDRKS 410

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF LH        D   M+ VL RR+ +L+K                  +PD +++DG
Sbjct: 411 YRKFKLHTQ----NSDVDSMKEVLYRRYFRLLKEG--------------SRFPDGILVDG 452

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G  Q+ AA+ +L +L + +RI ++ + K    +         +G  L ++    + + + 
Sbjct: 453 GWLQIEAAKEILGQLGLLDRIVVMGLVKDAHHNTRA--LMDGEGRELEVSKDSALFFLLT 510

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R++DE HR AI+ HR+ R KA   S LDEI GIG  RK+LL ++FG    +  +S E +A
Sbjct: 511 RMQDEVHRVAISYHRQLRSKAQTKSVLDEIAGIGLKRKKLLWKAFGNFSHLKNASEEEIA 570

Query: 591 SIEGISKKIACKIYNHFHKNTSH 613
            I  I  + A  +Y   HK    
Sbjct: 571 RI--IPAEPAHLLYKSLHKKEDE 591


>gi|325679748|ref|ZP_08159322.1| excinuclease ABC, C subunit [Ruminococcus albus 8]
 gi|324108563|gb|EGC02805.1| excinuclease ABC, C subunit [Ruminococcus albus 8]
          Length = 614

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/611 (28%), Positives = 296/611 (48%), Gaps = 26/611 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
            + ++   PGVY M D +G+++Y+GKA NL  R+ SY     +H  ++  M+S +N+  F
Sbjct: 17  KTSKLTTSPGVYIMKDKSGKIIYIGKAKNLHNRVTSYFRRGQDHLPKVWKMVSNVNDYEF 76

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E EAL+LE ++IK   P++NILL+DDK + YI +T     P +      S     
Sbjct: 77  IVTDSEFEALVLECSLIKLHTPKYNILLKDDKGYSYIRVT-DEPYPRIQAVLQKSDDSAE 135

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           Y GP+ S  AV++ +    + F L +C     R   + RPCL F IKRC G CTG  S E
Sbjct: 136 YIGPYTSSFAVKQAVEEANKVFRLPTCTRVFPRDIKKQRPCLNFHIKRCMGVCTGNFSEE 195

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y   V +A +++  G+    EK+   M +A    ++E A   RDR+AA+          
Sbjct: 196 EYRAAVKQAIEYIKNGSEMSVEKLTAEMERAAEDLEFELAARLRDRIAAIQKAAESQKII 255

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++  N ++AC     +  G+      +FL  D       +  + L  +  
Sbjct: 256 DRTIPDCDIIAISQNVDIACASVIMYRGGRLTDKADYFL-GDRAEPAQMMEEFVLSYYAM 314

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ ILL EE  +  +L+    ++Y + V + VPK+G   ++   A  NA+   + +
Sbjct: 315 KDDAPKTILLEEEPSDIEMLQQYLREKYDHAVYVNVPKKGHLVQLTTLAKNNANEFISVR 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           +         L++  +   +   P+ IE YD S++   + V  MVV       K +Y+KF
Sbjct: 375 VGRTRREVAGLEELARALGMEKPPRFIECYDISNLASTNMVAGMVVFENGRPCKKRYKKF 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           ++    V  Q+D A M  V+ERRF +  K E+            F   PD+++LDGG G 
Sbjct: 435 SIKT--VLEQNDYACMTEVIERRFGEYFKGEDE----------GFAQLPDLILLDGGNGH 482

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++  + VL++L V   + +  + K                  + L         + +++D
Sbjct: 483 VNTIKPVLERLKVS--VPLYGLVKDDHHRTRA---IATGDGEISLLKSRAAFNLVTQIQD 537

Query: 536 EAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HR AIT  + +RK++ +S  L ++ G+G  + + L+ +F T + + ++S E L ++ G
Sbjct: 538 EVHRVAITYQKAKRKRSTFSLELTKVRGVGEKKAQKLITAFKTKEALKKASVEELRAVAG 597

Query: 595 ISKKIACKIYN 605
           IS+  A ++ N
Sbjct: 598 ISEDTAKELKN 608


>gi|317057110|ref|YP_004105577.1| excinuclease ABC subunit C [Ruminococcus albus 7]
 gi|315449379|gb|ADU22943.1| excinuclease ABC, C subunit [Ruminococcus albus 7]
          Length = 614

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/611 (27%), Positives = 293/611 (47%), Gaps = 26/611 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
            + ++   PGVY M D +G+++Y+GKA NL  R+ SY     +H  ++  M+S +N+  F
Sbjct: 17  KTSKLTTSPGVYIMKDKSGKIIYIGKAKNLHNRVNSYFRKGQDHLPKVWKMVSNVNDYEF 76

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E EAL+LE ++IK   P++NILL+DDK + YI +T     P +      S     
Sbjct: 77  IVTDSEFEALVLECSLIKMHTPKYNILLKDDKGYSYIRVT-DEPYPRIQAVLQKSDDSAE 135

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           Y GP+ S   V++ +    R F L +C     R   + RPCL + IKRC G CTGE S E
Sbjct: 136 YIGPYTSSFTVKQAVEEANRVFRLPTCTKIFPRDIKKQRPCLNYHIKRCMGVCTGEFSEE 195

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y   V +A  ++  G+ +  E++   M +A    ++E A   RDR+ A+          
Sbjct: 196 EYRSIVSQAVDYIKNGSSSSVERLTEEMERAAENLEFELAARLRDRITAIQKAAESQKVI 255

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  ++  + ++AC     +  G+      +FL  D     A +  + L  +  
Sbjct: 256 DETIPDCDIIAISQSADIACASVIMYRGGRLTDKADYFL-GDRSEPAAMMEEFVLSFYAM 314

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ I+L E+  +  +LE    ++Y + V ++VPK+G   ++   A  NA+   + +
Sbjct: 315 KDDAPKTIILEEDPTDILMLEQYLREKYDHAVHVSVPKRGHLLRLSTMAKNNANAFISVR 374

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           +         L +  +   +   P+ IE YD S++     V  MVV       +  YRKF
Sbjct: 375 VGRTGREVAGLDELARALGMEKPPRFIECYDISNLASTDMVAGMVVFENGRPCRKNYRKF 434

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           ++    V  Q+D A M  V+ERRF++  K  ++           F   PD+++LDGG G 
Sbjct: 435 SIKT--VFEQNDYACMTEVIERRFAEYKKGTDD----------GFAQLPDLILLDGGNGH 482

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++  + VL++L +   + +  + K  +               + L         + +++D
Sbjct: 483 VNTIRPVLERLGIS--VPLYGLVKDDRHRTRA---IATGSGEISLLKSRAAFALVTQIQD 537

Query: 536 EAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HR AI+  R +R+K A+S  L  + G+G  + + L++ F T + + ++S E L ++ G
Sbjct: 538 EVHRVAISYQRSKRRKTAFSLELTSVRGVGEKKAQKLMREFKTKEALKKASAEELRAVAG 597

Query: 595 ISKKIACKIYN 605
           IS   A ++  
Sbjct: 598 ISADTAAELKK 608


>gi|218295697|ref|ZP_03496493.1| excinuclease ABC, C subunit [Thermus aquaticus Y51MC23]
 gi|218243856|gb|EED10383.1| excinuclease ABC, C subunit [Thermus aquaticus Y51MC23]
          Length = 595

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/615 (28%), Positives = 281/615 (45%), Gaps = 38/615 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PGVY        VLYVGKA +L+ R+KSY H+     RI     +   + F  T  
Sbjct: 12  LPEAPGVYLWK-RGEEVLYVGKAKSLRARVKSYFHAEGKARRIAE---EATALDFIATRD 67

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEALLLEAN+IK  +P +N+LL+DDK +P++ +T+    P L   R        Y+GPF
Sbjct: 68  EVEALLLEANLIKAHRPPYNVLLKDDKHYPFLKLTN-EPFPTLLVVRRVEEDGAKYYGPF 126

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A+ +    + R F LR  +    + R  PCL   + RC  PC G    + Y E V 
Sbjct: 127 PEAGALRRIKALVDRLFPLRKNSGYPMKRRRYPCLNHSMGRCLAPCVGLADPKAYGEVVR 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQNHNDSIYNR 241
           + +  L G    L  ++   M +A  + ++E A   RD++       S  Q   D     
Sbjct: 187 QVEAVLEGRVDGLLSELEAKMREAARRLEFERAAEIRDQIEALKAFFSTAQQAFDPEMGD 246

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
           +D   +     L+ +Q      G+  G  +  ++ +  +    + ++    +    P P 
Sbjct: 247 LDFLGMARAGALSVVQLYQVRSGRILGRISRVVEKEEATDEEILWAFLRDHYLEASPLPP 306

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS--TE 359
            +LL    E+   L     ++ G +V++ VPK+GEK++++E A  NA  +   +L     
Sbjct: 307 LVLLPFPLEDLESLAELLRRRAGRRVELRVPKRGEKQRLLELAEKNARLALESELKLLER 366

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
             +   LK      AL   P RIE YD SH+ G + V  M V+      K +YR+  L  
Sbjct: 367 RGNHPGLKALQDLLALSRRPFRIEGYDVSHLQGEARVFSMAVMEGGRPKKAEYRRMRLR- 425

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
                 DD A M   + RRF+  +K                   PD++++DGG GQ+ AA
Sbjct: 426 ---AGNDDYAAMEEGVFRRFTGSLKE---------------MPLPDLLLIDGGLGQVRAA 467

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
              L++  +   + ++ +AK        E     +G  + L +  P L  +  LRDEAH 
Sbjct: 468 MRALERAGLS--LPLVGLAKKE------EVLITPEGREIRLPLTHPALRLLIHLRDEAHA 519

Query: 540 FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
             +  H+KRR + A   L+ I GIG  R++LLL+ +G +K +  +  E LA + G+S K 
Sbjct: 520 NGLRYHQKRRAQEALKVLEGIPGIGEARRKLLLERYGGLKALKEAPLEELARLPGMSLKA 579

Query: 600 ACKIYNHFHKNTSHT 614
           A  +     +     
Sbjct: 580 AQALKEALREGAPEP 594


>gi|332827803|gb|EGK00538.1| excinuclease ABC, C subunit [Dysgonomonas gadei ATCC BAA-286]
          Length = 599

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 185/624 (29%), Positives = 308/624 (49%), Gaps = 49/624 (7%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P+ PG YQ  D  G ++YVGKA NL+KR+  Y   N+ + +   ++S+I +I++ + 
Sbjct: 10  QNIPDKPGCYQYFDDKGIIIYVGKAKNLKKRVSQYFTKNHDSPKTRILVSKIRDIKYIIV 69

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE + LLLE N+IK  +PR+N++L+DDKS+P I+I +    P +   R  S     YFG
Sbjct: 70  DTEEDTLLLENNLIKEFQPRYNVMLKDDKSYPSIVIRN-EYYPRVELTRKISKDGSQYFG 128

Query: 124 PFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+ +V +V+  +  + + + +R+C      + +   + + CL + IKRC GPC G  +SE
Sbjct: 129 PYTNVLSVKTLLEFVHKLYPIRTCSLNLTPEKIAEGKYKVCLEYHIKRCLGPCVGLQTSE 188

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y++ V   K+ L G  + + ++I   M +    +++E A   +++   + + +N +  +
Sbjct: 189 NYIKNVESIKEILKGNTNLVSDEIYAKMLELAENQEFEEANKLKEKYLLVENFKNKSTVV 248

Query: 239 YN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            N    +D +S   +++ A I     H G      TF  +   E    ++L   + +   
Sbjct: 249 SNINYNIDVYSYDEDESSAYINYLNVHNGAIIQAYTFEYRKRLEEEKEELLGLGIIEVRE 308

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                   ++     + +L            V+  +P++G+K+K++  +  N  +    K
Sbjct: 309 RFGSKAKEIVVPFYPDLTLE----------GVEFMIPQRGDKKKLLLLSTQNVRQYKIDK 358

Query: 356 LST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           L        E     ILK+  K   L  +P  IE +DNS+I G + V   VV       K
Sbjct: 359 LKKAESLNPEQRSVRILKEIQKDLNLKELPTHIECFDNSNIQGTNPVSACVVFKMGKPSK 418

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YR FN+    V+  DD + MR V+ RR+ +L++ E                 P ++++
Sbjct: 419 RDYRHFNVKT--VEGPDDFSTMREVVYRRYRRLLEEE--------------APLPQLIVI 462

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQLSAA   LK L++  ++ I+ IAK  +     E ++ +    L L+     L  
Sbjct: 463 DGGKGQLSAACESLKALDIYGKVAIVGIAKRLE-----EIYYPEDSIPLYLDKNSESLKV 517

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q LRDEAHRF IT HR +R K+   S LD I GIG   KRLLL+ F +VK I  +    
Sbjct: 518 LQHLRDEAHRFGITFHRNQRSKSQVKSELDNIKGIGDETKRLLLREFRSVKRIKLAEDRE 577

Query: 589 LASIEGISKKIACKIYNHFHKNTS 612
           L  I  I K     I  +F +  +
Sbjct: 578 LEKI--IGKFKTALIRKYFEEKNN 599


>gi|269119767|ref|YP_003307944.1| excinuclease ABC, C subunit [Sebaldella termitidis ATCC 33386]
 gi|268613645|gb|ACZ08013.1| excinuclease ABC, C subunit [Sebaldella termitidis ATCC 33386]
          Length = 594

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 178/615 (28%), Positives = 301/615 (48%), Gaps = 39/615 (6%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59
           +   ++P  PG Y M +  GRV+YVGKA NL+ R+ SY  + ++HT +   ++  I +I 
Sbjct: 8   VKLNEIPLNPGTYIMKNEKGRVIYVGKAKNLRNRVSSYFKNISSHTVKTLELVKNIRSIE 67

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--- 116
           F +   EVEAL+LE N+IK+ KP++NI+L+D+K++PYI I+ K   P +   R +     
Sbjct: 68  FFICQNEVEALILENNLIKKHKPKYNIMLKDEKTYPYIKIS-KEAFPKIEIVRSTKKLDS 126

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
            +  YFGP+     +   + SL + F +R C  ++ +   RPCL + +  C+GPC  + S
Sbjct: 127 KEAEYFGPYPMG--IYFAVKSLLKIFPIRDCNRNMEKQYDRPCLKYYMNLCTGPCVYKDS 184

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
             +Y E V+  + FL G  + +   +   M + +   ++E AI  R+++ +L  +  +  
Sbjct: 185 VTEYNENVNNFRNFLKGHQNKILGSLEARMKEFSENMEFERAIREREKIVSLKKLLQNQV 244

Query: 237 SIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
             Y+     D F +      + I       G+       ++  ++   +  +       +
Sbjct: 245 IEYSKEIDEDVFVIDQIGEKSFICVLDIREGKIINKNHIYVSLENVQED-DLFHRIFTAY 303

Query: 294 YTDKPCPENILL--SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
           Y  +  P+NI+L    E +   +      ++              +++++E   +N +  
Sbjct: 304 YEKRNIPKNIILDKKYEEDGDLIKGWVKAEKNKDVKLYFPSIDSRRKQLLEMGYLNLNEE 363

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +    +   +  L     +  L  +P+RI+ +D S+I G  AV  M V  +     ++
Sbjct: 364 VEKYFKQKKILEEGLAKLKIELNLRKLPRRIDCFDISNIQGKDAVAAMTVAIDGNPDPSK 423

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR F +   D    DD  MMR  L RR+S++   E                +P+++++DG
Sbjct: 424 YRHFKIQTKDTP--DDFHMMREALTRRYSKIPDEE----------------FPELILIDG 465

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQL  A  V+  ++  + + IISIAK  +     E F  ++ E  + +  D  L  +Q
Sbjct: 466 GKGQLGVATEVIDSIDKSHLVDIISIAKREE-----EIFKSREREPYIFSKSDEALKILQ 520

Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R+RDEAHRF IT HRK R K    S LD+I GIGP RK+ L+  FGT+K I  +S E L 
Sbjct: 521 RIRDEAHRFGITYHRKLRSKRNVKSFLDDIYGIGPKRKKELINKFGTMKNIKEASIEELR 580

Query: 591 SIEGISKKIACKIYN 605
            I  + + IA KI  
Sbjct: 581 KI--VPEDIAIKIKE 593


>gi|88607092|ref|YP_505460.1| excinuclease ABC, C subunit [Anaplasma phagocytophilum HZ]
 gi|119367625|sp|Q2GJJ1|UVRC_ANAPZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|88598155|gb|ABD43625.1| excinuclease ABC, C subunit [Anaplasma phagocytophilum HZ]
          Length = 614

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 220/611 (36%), Positives = 342/611 (55%), Gaps = 35/611 (5%)

Query: 10  PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69
           PGVY+M     R+LYVGKA +L+KR+ SY+  N  +  +  M+ QI  +  TVT  E EA
Sbjct: 27  PGVYKMFGTEDRLLYVGKAKDLKKRLSSYLSINRMSVNVYTMVKQIVRLEITVTENETEA 86

Query: 70  LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY---FGPFA 126
           LLLEA +IK LKP++NI++RDDK +PYIL + KHK P +  HR+    +G Y   +GPF 
Sbjct: 87  LLLEAKLIKSLKPKYNIIMRDDKFYPYILFS-KHKYPRIVLHRE-KRSEGRYTGLYGPFL 144

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S       I ++++ F LRSC D+ F  R RPC+ ++IK CS PC  +I+ E Y + V  
Sbjct: 145 SSVMTRHIIATIKKAFLLRSCPDNFFATRARPCIEYEIKNCSAPCMQKITEEDYAKAVQM 204

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMD 243
           A K L+G +  ++ ++   M + +  +DYESAI+ RDRL    ++         I+  +D
Sbjct: 205 AHKALTGQSKEIQCELFEMMCRFSNNQDYESAIVCRDRLHALKSMKECMGFQTGIHGDVD 264

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
             ++Y  ++L C+Q  FF  G N G+  +F+++   +++A I++ F+ Q Y D P    +
Sbjct: 265 FIAVYKRQDLYCMQVVFFRDGVNYGSQPYFIESVGNASDADIVNMFMLQIYNDFPSVVYV 324

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
            L  + +   ++  +  +    +V I +P   ++ K +  A   A  +  +++       
Sbjct: 325 DLPSDYDTN-IMSTAIKQLMKREVDIRLPATRDELKAMGLARNYAMEALNRRVRNTAQDT 383

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             L++F   F L   P+RIEIYDNSHI G    G MVV G++G +K +YRKF    N V 
Sbjct: 384 D-LEEFATFFDLLKAPERIEIYDNSHISGTHPYGVMVVCGKDGLLKKEYRKF--KINTVT 440

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DDC+MM  V+ RRF ++                     PD +++DGG+GQ SA  G L
Sbjct: 441 NGDDCSMMHEVISRRFKEIPD-----------------VLPDFILIDGGRGQRSAVYGEL 483

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
            +L     I    IAKGP R AG E F+   GE L L+    +++F+ RLRDEAHRFAIT
Sbjct: 484 SRLG----IPFACIAKGPGRVAGTEVFYFSNGEKLSLDPASKLMHFLCRLRDEAHRFAIT 539

Query: 544 THRKRR-KKAAYSPLD-EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           +HRK R  K  +S L  +I GIG  + + +L  FG+++ +  +  E ++ + GIS K+A 
Sbjct: 540 SHRKSRDGKLQFSTLLNDIPGIGKTKGKAILAYFGSIQAMKHARVEEISKVPGISLKLAK 599

Query: 602 KIYNHFHKNTS 612
           ++ ++  ++ +
Sbjct: 600 RVADYLKESQT 610


>gi|22299296|ref|NP_682543.1| excinuclease ABC subunit C [Thermosynechococcus elongatus BP-1]
 gi|32130297|sp|Q8DI39|UVRC_THEEB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|22295479|dbj|BAC09305.1| excinuclease ABC subunit C [Thermosynechococcus elongatus BP-1]
          Length = 626

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 195/629 (31%), Positives = 301/629 (47%), Gaps = 41/629 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63
           Q+P  PGVY + D   ++LY+GK+  L+ R++SY         R+  M+ Q+  I F VT
Sbjct: 18  QLPLAPGVYFLKDKTDQILYIGKSKRLRSRVRSYFREPAQLGPRLERMVYQVAEIEFIVT 77

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-------- 115
            TE EAL LEAN+IK+ +P FN+LL+DDK +PY+ IT     P ++  R           
Sbjct: 78  DTEAEALALEANLIKQHQPHFNVLLKDDKKYPYVCITWSEPYPRIFITRKRQFGNGGDPR 137

Query: 116 --TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
             + +  Y+GP+     + +T+  ++R F LR     +F  R RPCL + I RC G C G
Sbjct: 138 SDSAKDRYYGPYVDSFRLRQTLALVKRLFPLRQRPRPLF--RDRPCLNYDIGRCPGVCQG 195

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS ++Y + +        G    L  ++   M QA    ++E A   RD++  L H+  
Sbjct: 196 LISPQEYRQTLQRVAMIFQGRTGELVAQLQAQMAQAAADLNFELAARLRDQIRGLEHLGV 255

Query: 234 HNDSIYNR----MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289
                        D  +L      A IQ      G+  G   F     S  +   IL   
Sbjct: 256 DQKVSLPDDTVSRDAIALAVGDRHAAIQLFQIRAGRLVGRLAFVADAQSG-SAGTILQRV 314

Query: 290 LRQFY---TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
           L + Y    D   P  ILL     E   L     ++ G  V +TVP++  K ++I     
Sbjct: 315 LEEHYAQVEDVEIPSEILLQHPLPEPDFLRTYLSEKKGRAVTLTVPQRQAKAELIAMVQR 374

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA     +        Q  L+D  +   L  +P RIE YD SHI G  AV   VV  +  
Sbjct: 375 NAELELARLQQASDRTQTALEDLAQLLGLDTLPHRIEGYDISHIQGSDAVASRVVFIDGL 434

Query: 407 FVKNQYRKFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
             +  YR +N+   +VK    DD A +  +L RRF+  ++ +                WP
Sbjct: 435 PAQQHYRHYNIRNPEVKLGHSDDFASLAEILRRRFAPYLEGQGETPD----------DWP 484

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGGKGQLSA   VL+ L  E  +  +S+AK  +     + F   + + L  +   
Sbjct: 485 DIILIDGGKGQLSAVVQVLEPLLEELTL--VSLAKQRE-----DIFLPHQRQPLPADPEQ 537

Query: 525 PILYFIQRLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           P +  ++R+RDEAHRFA+  H +KR ++   S LD+I G+G  R++ LL +F ++  I  
Sbjct: 538 PGVQLLRRVRDEAHRFALNFHRQKRAQRQRRSHLDQIPGLGYQRQKELLATFRSIDYIRM 597

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNTS 612
           ++PE LA + G+  ++A +IY +FH +  
Sbjct: 598 ATPEQLAQVNGVGPRLAARIYRYFHPDAD 626


>gi|58584629|ref|YP_198202.1| nuclease subunit of the excinuclease complex, UvrC [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|75497901|sp|Q5GSR4|UVRC_WOLTR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|58418945|gb|AAW70960.1| Nuclease subunit of the excinuclease complex, UvrC [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 606

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 228/605 (37%), Positives = 346/605 (57%), Gaps = 26/605 (4%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P+  GVYQM+    +VLYVGKA NL+ R+ +Y+   N + R   M+SQ+  +   VT  E
Sbjct: 18  PQSCGVYQMIGDKDKVLYVGKAKNLKSRLSNYLRYENLSERTKFMLSQVIKVEVLVTENE 77

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFGPF 125
           ++ALLLEA +IK LKP +NI+ +D +S+PYI+I+ KH  P + ++R         Y+GPF
Sbjct: 78  IDALLLEARLIKSLKPPYNIIFKDGRSYPYIVIS-KHNYPRIAQYRGKFKKGEFHYYGPF 136

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            SV AV++T+ SLQ+TF LR C+D  F    RPC+ +QIKRCS PC G+I+ + Y + V 
Sbjct: 137 ISVAAVKQTMLSLQKTFLLRVCSDQYFASTKRPCIEYQIKRCSAPCVGKITKDDYCQSVK 196

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIYNRMD 243
           + +  L G N  +K++++  M + + +E+YE A I+RDRL  L  IQ  +   S     D
Sbjct: 197 QTRDTLLGRNEKVKKQLSSTMEKCSKEENYELAAIYRDRLKFLEQIQMQSMDFSFEKDAD 256

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE-N 302
            F +   ++LACI    F    N G+  +F++  S+  + +ILS FL + Y     P   
Sbjct: 257 FFGIARKEDLACIGVLSFRNKDNYGSTPYFVENCSDHPDDEILSTFLIKLYNSANIPPAQ 316

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           I +S+      ++E +        +K    K  ++  +++    N+ RS  QKL+   ++
Sbjct: 317 IYVSDFVTGKEIIEQALHNVTHKPIKALHAKSKKEHNLLKFVYDNSQRSLEQKLTDYKNN 376

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               ++ +K F LP+IPKR+E+YDNSH  G   VG MVV G+ GF+K++YRKF +    +
Sbjct: 377 LEKFEELSKIFLLPNIPKRVEVYDNSHTSGNQQVGVMVVAGKEGFLKSEYRKFTIKGEIL 436

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD  MMR VL RRFS   K+                  PD +++DGG G +S  Q V
Sbjct: 437 G--DDYEMMREVLTRRFSNNTKD----------------VVPDFLLIDGGPGHISVVQNV 478

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  LN+   +    +AKG  R+AG E+F++   E   L     ++ ++Q LR+EAHRFAI
Sbjct: 479 LNTLNI--NVPFACMAKGSYRNAGNERFYMPNREDFTLKNDSKVMLYLQSLRNEAHRFAI 536

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T+HRK+R K  + SPL +I  IG  RK  L+  FG+V+ IS++S   + ++  ISK++A 
Sbjct: 537 TSHRKKRDKQFFVSPLSKITSIGDKRKNALMSHFGSVENISKASLAEIQNVARISKELAE 596

Query: 602 KIYNH 606
            I  H
Sbjct: 597 VILKH 601


>gi|317504355|ref|ZP_07962341.1| excinuclease ABC subunit C [Prevotella salivae DSM 15606]
 gi|315664546|gb|EFV04227.1| excinuclease ABC subunit C [Prevotella salivae DSM 15606]
          Length = 615

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 170/628 (27%), Positives = 307/628 (48%), Gaps = 48/628 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA  L++R+ SY H      +   ++S+I +I +TV  
Sbjct: 19  NMPEKPGSYQFYDENHTIIYVGKAKRLKQRVSSYFHKEVDRFKTKVLVSKIRDISYTVVK 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE ++IK+  PR+N+LL+D K++P I IT+    P ++K R  +   G+++GP
Sbjct: 79  TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-EYFPRIFKTRTINKHYGTFYGP 137

Query: 125 FASVDAVEKTINSLQ-----RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           +  V ++   ++ ++     RT  L    + + + + +PCL + I  C GPC  + S E+
Sbjct: 138 YPHVGSMNAILDIIKRLYKPRTCRLSLTKEGIAQGKFKPCLEYHIHNCGGPCINKQSYEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E +++A++ L G    + +++ R M +      +E A   +++++ L+   + ++ + 
Sbjct: 198 YQENMNQAREILKGNTREVSKRLYRLMMKNAELLKFEVAEDLKNKISLLNDFVSKSEVVS 257

Query: 240 NRMDCFSLY-----HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             +D   ++      N   A I       G    + TF  K   +  + ++L   +    
Sbjct: 258 YTIDDVDVFTIIDDDNNRNAYINYIHVRKGTINQSFTFEYKRKLDERDEELLITAIPDIR 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     E  + E              +P++G+K+ ++E + +N  +    
Sbjct: 318 ERFKSHAKEIIVPFEMEWKMKE----------ATFVIPQRGDKKHLLELSEMNGKQYKFD 367

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     ++K+  +K  LP +P +IE +DNS+I G  AV   +V       
Sbjct: 368 RLKQAEKLNPEQKQTRLMKELQEKLRLPKLPYQIECFDNSNISGTDAVAGCIVYKGMKPS 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           +  YRK+N+    V+  DD A M+ V+ RR+S++ +                   PD++I
Sbjct: 428 RKDYRKYNIKT--VEGPDDYASMQEVVRRRYSRMKEEH--------------LPLPDLII 471

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V+    ++  I I  +AK  +     E  +    + + L+++  +  
Sbjct: 472 TDGGKGQMDVVKEVVVDE-LQLDIPIAGLAKDDRHRT-NELLYGFPPQTVGLDIKSELFK 529

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HRFAIT HR +R K A +S LD+I G+GP  K  LL+   TVK I  +  +
Sbjct: 530 VLTQIQDEVHRFAITFHRDKRSKHALHSELDDIKGLGPKGKEALLKRLKTVKGIKDADYQ 589

Query: 588 TLASIEGISKKIACKIYNHFHKNTSHTP 615
            + SI G  +     +Y HFH ++  T 
Sbjct: 590 EIVSILG--QAKGTLVYKHFHPDSPTTE 615


>gi|258648860|ref|ZP_05736329.1| excinuclease ABC subunit C [Prevotella tannerae ATCC 51259]
 gi|260850880|gb|EEX70749.1| excinuclease ABC subunit C [Prevotella tannerae ATCC 51259]
          Length = 613

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/621 (27%), Positives = 301/621 (48%), Gaps = 36/621 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG YQ L+  G+++YVGKA NL++R+ SY  +   + +  H++ +I +IR+ V  
Sbjct: 19  NLPEKPGCYQYLNADGKIIYVGKAKNLKRRVSSYFTNPKQSFKTQHLVPKIRDIRYVVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE N+IKR KP +N+LL+DDK++P I I++   +P ++K R  +    ++FGP
Sbjct: 79  TEEDALLLENNLIKRYKPHYNVLLKDDKTYPSIAISN-EYLPRVFKVRKRAGKGATFFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ V  +   +    + +  R C   + +      +   CL + I  C+ PC G+ + + 
Sbjct: 138 YSHVPTMYALLELCHKLYRPRPCRTPMTKEGVESGKYDLCLEYHIGNCAAPCVGKQTWDD 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y + +   K+ L G    L+  I   M +      +E+A   + +   LS+ +  ++   
Sbjct: 198 YNKNIAACKEILRGNTAELERNIKARMLEEAEHLRFEAAEALKQQYLLLSNYRAKSEIVS 257

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
            + + +D F++   + +A I       G      TF  K     ++ ++LS  + +    
Sbjct: 258 SVIHNLDVFNIESEEKVAYINYLHVTNGNITQAFTFEYKKRLGESDEELLSLGIVEMRAR 317

Query: 297 KPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
                  I++    +           Q G K K+    +   ++     L  A      K
Sbjct: 318 YHSQSAEIVVPFALDLPESYATQTIPQKGDKKKLLELSKLNVKQYKFDRLKQAD-----K 372

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L+ E     ++++  ++  L  +P RIE++DNS++ G  AV   VV  +    K  YRK+
Sbjct: 373 LNPEQKSVRLMQEIQRELGLSQLPYRIELFDNSNLQGSDAVAACVVFEKLRPAKKAYRKY 432

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    V   DD A M+ V+ RR+++LI+  + L              P+++I DGGKGQ
Sbjct: 433 NIKT--VSGPDDYASMQEVVRRRYTRLIEEGQPL--------------PNLIIADGGKGQ 476

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           +   + V++   ++  I I  +AK        E  F     ++ +     +   +  ++D
Sbjct: 477 MEVIRQVVED-ELKLSIPIAGLAKDDHHRT-RELLFGFPPLSIGMKADSYLFRLLTSMQD 534

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HRFAIT HR++R K    S LD+I G+G   K LLLQ FG++K I  ++   L ++ G
Sbjct: 535 EVHRFAITFHRQKRSKRQTASRLDQIAGVGEKTKSLLLQKFGSLKRIEEATCPQLQAVLG 594

Query: 595 ISKKIACKIYNHFHKNTSHTP 615
              K   K++ + H+  ++  
Sbjct: 595 --TKRGAKLFENLHQMAANQE 613


>gi|160943016|ref|ZP_02090254.1| hypothetical protein FAEPRAM212_00493 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445710|gb|EDP22713.1| hypothetical protein FAEPRAM212_00493 [Faecalibacterium prausnitzii
           M21/2]
          Length = 617

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/613 (26%), Positives = 287/613 (46%), Gaps = 15/613 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64
           +P  PGVY + D +  ++Y+GKA  L+ R+  Y      H ++++ MI+        V  
Sbjct: 13  LPLLPGVYIIRDKSDTIIYIGKAKRLRIRVSQYFREGVPHDNKVSQMIAHAYAFDVIVCQ 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LEA+ IK   P++NILL+DDK + YI +T +   P L            Y GP
Sbjct: 73  SEFEALVLEASQIKAHTPKYNILLKDDKGYSYIRVT-REDWPRLSFTLQKEEDGAEYIGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           + S  A  +   +    F L  C+    +   + RPCL   I +C   C+G+IS E Y +
Sbjct: 132 YTSSFAARQMAETAMDAFLLPRCSKRFPQEIGKGRPCLNAHIGKCMAVCSGKISCETYNQ 191

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241
            V  A   +  G  ++ + +   M +A+ + ++E+A + RD++ A++ +      + +  
Sbjct: 192 AVKNAVHLIRYGKKDILKTLNERMQEASDRLEFETAALLRDQINAITKLTAGQKVVVDPD 251

Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
             MD  +L    +  C     F  G+       FL  D+   +A    +  R +  D+  
Sbjct: 252 VEMDVVALAGTPDSVCAAVLRFREGR-LTDKREFLFHDTSDIDAVREEFLPRYYLDDEQI 310

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ I +     +   L+ +  ++ G +V++ VP++G+K  ++E A  NA     ++    
Sbjct: 311 PKIIAVDALPPDMDALQQALNQKRGSEVQLYVPQRGDKAHLVEMAHTNAVERLARESGRY 370

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
              + +L +  +   L   P+ IE YD S+    S+V  MV   +    K  YRKF +  
Sbjct: 371 AREEKLLDELAQVLGLSKPPRAIESYDISNWGDGSSVCGMVTFKDGKPFKAGYRKFKMKT 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V   DD A +   + RR ++  K         +     F   PD++++DGG+GQ+SAA
Sbjct: 431 --VAGTDDYASLAETVSRRAAEYEKYAAQAENG-QPSGNWFGQKPDLLLMDGGRGQVSAA 487

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           +  L    + + + +  + K               G  + +NM      FI  ++DE HR
Sbjct: 488 KDALAGTALAD-VPLYGMVKDDHHRTRA--IVDSDGREIAINMNRGTFTFITAIQDETHR 544

Query: 540 FAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA    +++ K K+  S L E+ G+GP   + LL  F +V  +  ++P+ L +  G+ ++
Sbjct: 545 FANAYRKQQMKQKSYSSTLTEVPGVGPKTAKALLAQFKSVGAVKDATPDQLENTPGVGRQ 604

Query: 599 IACKIYNHFHKNT 611
           +A  IY +FH+  
Sbjct: 605 LAQTIYEYFHREA 617


>gi|295103457|emb|CBL01001.1| Excinuclease ABC subunit C [Faecalibacterium prausnitzii SL3/3]
          Length = 617

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/613 (26%), Positives = 288/613 (46%), Gaps = 15/613 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64
           +P  PGVY + D +  ++Y+GKA  L+ R+  Y      H ++++ MI+        V  
Sbjct: 13  LPLLPGVYIIRDKSDTIIYIGKAKRLRIRVSQYFREGVPHDNKVSQMIAHAYAFDVIVCQ 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LEA+ IK   P++NILL+DDK + YI +T +   P L            Y GP
Sbjct: 73  SEFEALVLEASQIKAHTPKYNILLKDDKGYSYIRVT-REDWPRLSFTLQKEEDGAEYIGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           + S  A  +   +    F L  C+    +   + RPCL   I +C   C+G+IS E Y +
Sbjct: 132 YTSSFAARQMAETAMDAFLLPRCSKRFPQEIGKGRPCLNAHIGKCMAVCSGKISCETYNQ 191

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241
            V  A   +  G  ++ + +   M +A+ + ++E+A + RD++ A++ +      + +  
Sbjct: 192 AVKNAVHLIRYGKKDILKTLNERMQEASDRLEFETAALLRDQINAITKLTAGQKVVVDPD 251

Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
             MD  +L    +  C     F  G+       FL  D+   +A    +  R +  D+  
Sbjct: 252 VEMDVVALAGTPDSVCAAVLRFREGR-LTDKREFLFHDTSDIDAVREEFLPRYYLDDEQI 310

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ I +     +   L+ +  ++ G +V++ VP++G+K  ++E A  NA     ++    
Sbjct: 311 PKIIAVDALPPDMDALQQALNQKRGSEVQLYVPQRGDKAHLVEMAHTNAVERLARESGRY 370

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
              + +L +  +   L   P+ IE YD S+    S+V  MV   +    K  YRKF +  
Sbjct: 371 AREEKLLDELAQVLGLSKSPRAIESYDISNWGDGSSVCGMVTFKDGKPFKAGYRKFKMKT 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V   DD A +   + RR ++  K             + F   PD++++DGG+GQ+SAA
Sbjct: 431 --VAGTDDYASLAETVSRRAAEYEKYAAQAESGQSSGNW-FGQKPDLLLMDGGRGQVSAA 487

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           +  L    + + + +  + K               G  + +NM      FI  ++DE HR
Sbjct: 488 KEALAGTALAD-VPLYGMVKDDHHRTRA--IVDSDGREIAINMNRGTFTFITAIQDETHR 544

Query: 540 FAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA    +++ K K+  S L E+ G+GP   + LL  F +V  +  ++P+ L +  G+ ++
Sbjct: 545 FANAYRKQQMKQKSYSSTLTEVPGVGPKTAKALLTQFKSVGAVKDATPDQLENTPGVGRQ 604

Query: 599 IACKIYNHFHKNT 611
           +A  IY++FH+  
Sbjct: 605 LAQTIYDYFHREA 617


>gi|282858646|ref|ZP_06267804.1| excinuclease ABC, C subunit [Prevotella bivia JCVIHMP010]
 gi|282588564|gb|EFB93711.1| excinuclease ABC, C subunit [Prevotella bivia JCVIHMP010]
          Length = 613

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 308/627 (49%), Gaps = 50/627 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D +  ++Y+GKA NL++R+ SY H      +   ++S+I +I ++V  
Sbjct: 19  SMPEKPGTYQYYDESHTIIYIGKAKNLKRRVASYFHKEVDRFKTKILVSKIFDISYSVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALL+E  +IK+ +PR+N+LL+D K++P I +T+    P ++  R  +   G++FGP
Sbjct: 79  TEEDALLIENQLIKQYQPRYNVLLKDGKTYPSICVTN-EYFPRIFNTRTINKKYGTFFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   +  +++T+  R+C      + + + + +PCL + I  C  PC  + + E 
Sbjct: 138 YSHISSMYAILAIIKKTYKPRTCRFPITKEGILKGKYKPCLEYHIGNCGAPCINKQTYED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +AK+ L G   +++  + + M Q   +  +E A I + +  AL +    ++ + 
Sbjct: 198 YQENIRQAKEILKGNTRDVQRILRQQMEQYAEELRFEEAEICKQKFIALENFAAKSEIVS 257

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             +    ++   N      A I       G    + T+  K   + ++A++L+  + +  
Sbjct: 258 YTITDVDVFSIDNDETNKNAFINYIHVTNGAINQSFTYEYKRKLDESDAELLNEAIPEIR 317

Query: 295 TDKPCP-ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                  + I++  E +                    +P++G+KR ++E + +NA +   
Sbjct: 318 ERFKSKAKEIIVPFELDFK-----------IKGADFFIPQRGDKRHLLELSQMNAKQYKF 366

Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
            +L        E     ++ +   K  LP +P  IE +DNS+I G  AV   +V  +   
Sbjct: 367 DRLKQTEKLNPEQKQTRLMTELRDKLKLPKLPYTIECFDNSNISGTDAVAGCIVYKKMKP 426

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K  YRK+N+    V+  DD A M+ V+ RR+S++ +                   PD++
Sbjct: 427 SKKDYRKYNIKT--VEGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLI 470

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           I DGGKGQ+   + V++   +  +I I  +AK  K     E  +    + + L     + 
Sbjct: 471 ITDGGKGQMEVVRAVIED-ELHLQIPIAGLAKNNKHRT-NELLYGFPPQTIGLKTDSELF 528

Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             + +++DE HR+AI+ HR +R K   +S LD+I GIG   K  LL+ F TV+ I  +  
Sbjct: 529 KALTQIQDEVHRYAISFHRNKRSKHQLHSELDDIQGIGTKTKETLLKEFKTVQKIKTTDI 588

Query: 587 ETLASIEGISKKIACKIYNHFHKNTSH 613
           + L +I  I K  A  I+N+FH  T+ 
Sbjct: 589 QELTNI--IGKSKATLIFNYFHPLTAE 613


>gi|239631575|ref|ZP_04674606.1| excinuclease ABC subunit C [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066394|ref|YP_003788417.1| nuclease subunit of the excinuclease complex [Lactobacillus casei
           str. Zhang]
 gi|239526040|gb|EEQ65041.1| excinuclease ABC subunit C [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438801|gb|ADK18567.1| Nuclease subunit of the excinuclease complex [Lactobacillus casei
           str. Zhang]
          Length = 602

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/611 (27%), Positives = 280/611 (45%), Gaps = 40/611 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG YQM DI G+++YVGKA NL+ R++SY   ++H  ++  M+SQ+ +  F VT T
Sbjct: 13  LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVSQVADFDFIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +I++ +P +NI L+    +PYI IT   + P +          G YFGP+
Sbjct: 72  DKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKIT-HERDPKIEITGTIRKDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T++ +Q+ + LR C         RPCL + + +C G C   +  ++Y + + 
Sbjct: 131 PNVYAAQETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIE 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
             K+FL+G     K  +   M +A     +E A   RD+L  +         I +     
Sbjct: 187 RIKRFLNGNVGKAKASLTAKMERAAKNLQFERAAEIRDQLHYIEQTVEKQKIISHDNTTR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +     +      + +               +   P  
Sbjct: 247 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRKNNVKPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358
           +L+    +   L +I        ++ +  P++GEKR ++  A  N+              
Sbjct: 307 VLVPAGLDNKVLADIL-------EIPVRTPQRGEKRDLMALAAKNSQIKLEDKFRLMELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +    +K+      LP      E +D+SHI G   V  MV   +    KN YRK+ L 
Sbjct: 360 NRTTIGAMKELMAALNLPMG-HVAEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 418

Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
            +      D A   R V+ RR+++L+K                   PD++++DGG+ +++
Sbjct: 419 ADKTHNGADEAANTREVIRRRYTRLLKER--------------APLPDLILMDGGEIEMN 464

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+ VL +  +   I +  + K  K        F    + + L+ +    Y ++R++DE 
Sbjct: 465 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGNADQLINLDPKSQGFYLLERIQDEV 522

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K +  S L+ I G+GP  +  LL+ F T+  I  +  E +  + GIS
Sbjct: 523 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTINKIKEAPLEDIQEL-GIS 581

Query: 597 KKIACKIYNHF 607
           KK+A  +    
Sbjct: 582 KKVAQALKLSL 592


>gi|191638340|ref|YP_001987506.1| excinuclease ABC subunit C [Lactobacillus casei BL23]
 gi|229558037|sp|B3WE47|UVRC_LACCB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|190712642|emb|CAQ66648.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Lactobacillus casei BL23]
 gi|327382367|gb|AEA53843.1| UvrABC system protein C [Lactobacillus casei LC2W]
 gi|327385568|gb|AEA57042.1| UvrABC system protein C [Lactobacillus casei BD-II]
          Length = 602

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/611 (27%), Positives = 280/611 (45%), Gaps = 40/611 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG YQM DI G+++YVGKA NL+ R++SY   ++H  ++  M+SQ+ +  F VT T
Sbjct: 13  LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVSQVADFDFIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +I++ +P +NI L+    +PYI IT   + P +          G YFGP+
Sbjct: 72  DKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKIT-HERDPKIEITGTIRKDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T++ +Q+ + LR C         RPCL + + +C G C   +  ++Y + + 
Sbjct: 131 PNVYAAQETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIE 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
             K+FL+G     K  +   M +A     +E A   RD+L  +         I +     
Sbjct: 187 RIKRFLNGNVGKAKASLTAKMERAAKNLQFERAAEIRDQLHYIEQTVEKQKIISHDNTTR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +     +      + +               +   P  
Sbjct: 247 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRKNNVKPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358
           +L+    +   L +I        ++ +  P++GEKR ++  A  N+              
Sbjct: 307 VLVPAALDNKVLADIL-------EIPVRTPQRGEKRDLMALAAKNSQIKLEDKFRLMELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +    +K+      LP      E +D+SHI G   V  MV   +    KN YRK+ L 
Sbjct: 360 NRTTIGAMKELMAALNLPMG-HVAEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 418

Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
            +      D A   R V+ RR+++L+K                   PD++++DGG+ +++
Sbjct: 419 ADKTHNGADEAANTREVIRRRYTRLLKER--------------APLPDLILMDGGEIEMN 464

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+ VL +  +   I +  + K  K        F    + + L+ +    Y ++R++DE 
Sbjct: 465 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGNADQLINLDPKSQGFYLLERIQDEV 522

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K +  S L+ I G+GP  +  LL+ F T+  I  +  E +  + GIS
Sbjct: 523 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTINKIKEAPLEDIQEL-GIS 581

Query: 597 KKIACKIYNHF 607
           KK+A  +    
Sbjct: 582 KKVAQALKLSL 592


>gi|116494833|ref|YP_806567.1| excinuclease ABC subunit C [Lactobacillus casei ATCC 334]
 gi|122263749|sp|Q039J7|UVRC_LACC3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|116104983|gb|ABJ70125.1| Excinuclease ABC subunit C [Lactobacillus casei ATCC 334]
          Length = 602

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/611 (27%), Positives = 280/611 (45%), Gaps = 40/611 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG YQM DI G+++YVGKA NL+ R++SY   ++H  ++  M+SQ+ +  F VT T
Sbjct: 13  LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVSQVADFDFIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +I++ +P +NI L+    +PYI IT   + P +          G YFGP+
Sbjct: 72  DKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKIT-HERDPKIEITGTIRKDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T++ +Q+ + LR C         RPCL + + +C G C   +  ++Y + + 
Sbjct: 131 PNVYAAQETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIE 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
             K+FL+G     K  +   M +A     +E A   RD+L  +         I +     
Sbjct: 187 RIKRFLNGNVGKAKASLTAKMERAAKNLQFERAAEIRDQLHYIEQTLEKQKIISHDNTTR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +     +      + +               +   P  
Sbjct: 247 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRRNNVKPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358
           +L+    +   L +I        ++ +  P++GEKR ++  A  N+              
Sbjct: 307 VLVPAGLDNKVLADIL-------EIPVRTPQRGEKRDLMALAAKNSQIKLEDKFRLMELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +    +K+      LP      E +D+SHI G   V  MV   +    KN YRK+ L 
Sbjct: 360 NRTTIGAMKELMAALNLPMG-HVAEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 418

Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
            +      D A   R V+ RR+++L+K                   PD++++DGG+ +++
Sbjct: 419 ADKTHNGADEAANTREVIRRRYTRLLKER--------------APLPDLILMDGGEIEMN 464

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+ VL +  +   I +  + K  K        F    + + L+ +    Y ++R++DE 
Sbjct: 465 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGNADQLINLDPKSQGFYLLERIQDEV 522

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K +  S L+ I G+GP  +  LL+ F T+  I  +  E +  + GIS
Sbjct: 523 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTINKIKEAPLEDIQEL-GIS 581

Query: 597 KKIACKIYNHF 607
           KK+A  +    
Sbjct: 582 KKVAQALKLSL 592


>gi|237740769|ref|ZP_04571250.1| excinuclease ABC subunit C [Fusobacterium sp. 2_1_31]
 gi|229422786|gb|EEO37833.1| excinuclease ABC subunit C [Fusobacterium sp. 2_1_31]
          Length = 589

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/613 (31%), Positives = 308/613 (50%), Gaps = 39/613 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M     +V+YVGKA NL+ R+ SY +  + + +   ++  I +I F +T 
Sbjct: 7   NIPESPGVYLMK-KNNKVIYVGKAKNLKNRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           TE++ALLLE N+IK+  P++NILL+D+K++P+I I+ K   P++   R +       G Y
Sbjct: 66  TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKTGEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L + F +R C   + +   RPCL + +K C+GPC  +   E Y 
Sbjct: 125 FGPYP--YGAWRLKAVLMKLFKIRDCNRDMKKKSQRPCLKYYMKSCTGPCVYKDIKEDYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             +   K+ L G +  L  +++  MN++  + D+E +II+R+++  L +I N     Y R
Sbjct: 183 NDIESLKQVLRGNSSKLISELSILMNKSAEEMDFEKSIIYREQIKELKNIANSQIIQYER 242

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      + A I       G+  G  +  L   ++ T+  +       +Y+   
Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKTSTSLDLKNKITDN-VFEAIFMSYYSKHI 301

Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P++++L  E E     ++E    +    K       +  ++ ++E A  N  R      
Sbjct: 302 LPKSLVLDAEYENELAVVVEALTLEDSKKKEFHFPKIKSRRKDLLEMAYKNLERDIETYF 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +  +KD      L   P+RIE +D S+I G  AV  M V  E    K +YRKF 
Sbjct: 362 SKKDTIEKGIKDLHDILNLKRFPRRIECFDISNIQGKDAVASMSVSIEGRAAKKEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD +MMR V+ERR+S+L   +                +PDV+++DGG GQ+
Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADKD----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  VLKKL   +   ++S+AK  +     E +   +     L+     L   QR+RDE
Sbjct: 464 NSAGEVLKKLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K    S LD I GIG +R++ LL  FG+V  I ++S E L  I  +
Sbjct: 519 AHRFGITYHRKLRSKRIISSELDRIEGIGEVRRKKLLTKFGSVSAIKKASIEELKEI--V 576

Query: 596 SKKIACKIYNHFH 608
            +K+A +I NH  
Sbjct: 577 PEKVALEIKNHIK 589


>gi|313679646|ref|YP_004057385.1| excinuclease ABC subunit c [Oceanithermus profundus DSM 14977]
 gi|313152361|gb|ADR36212.1| Excinuclease ABC subunit C [Oceanithermus profundus DSM 14977]
          Length = 597

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 188/618 (30%), Positives = 302/618 (48%), Gaps = 36/618 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY      GRV+YVGKA NL+ R+  Y H  +   RI    ++ + + F VT 
Sbjct: 8   RLPSRPGVYLWK-RDGRVIYVGKAKNLRARVNHYAHGEDKAGRI---FAEADALEFIVTR 63

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            EVEALLLEAN+IK  +P FN+L++DDK +P++ +T+    P L   R        Y+GP
Sbjct: 64  DEVEALLLEANLIKAHRPEFNVLMKDDKHYPFLKLTN-ETFPTLVVTRRVEDDGARYWGP 122

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F    AV +    + R F LR  +    + R RPCL   + RC  PC G    E Y   V
Sbjct: 123 FPDAGAVRRIKRLVDRVFPLRKNSGVPMKKRRRPCLNHAMGRCLAPCVGRADPEAYARVV 182

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI----QNHNDSIYN 240
              ++ L G   +L E++A  M +A   + +E A   RD++ AL       Q        
Sbjct: 183 RRVEQLLDGRVDDLLEELAVRMEEAARAQHFELAAELRDQIRALERFFASGQQAYAVGLG 242

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
            +D   L  +   A +Q      G+  G  + F++   E+T+A++L  FLR +Y      
Sbjct: 243 DLDAVGLARSGAYAMVQLFQIRGGRMLGRTSRFVENAGEATDAEVLEAFLRDYYLVASPL 302

Query: 301 ENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS-- 357
             ++L   A E   +   +  ++ G KV++ VPK+GEK ++++ A  NA      +L+  
Sbjct: 303 PPLVLLPLATEGQEVFARALAERAGRKVELRVPKRGEKVRLVQFASENARAGLEVELARL 362

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            +      L    +   L   P RIE YD S++ G + V  + V       K+QYR+  +
Sbjct: 363 EKRGDHPALASLQRALGLARRPWRIEGYDVSNLFGTAVVAAIAVFEGGRPKKSQYRRMRI 422

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   DD   M   + RRF+  ++ +                 PD++++DGG GQ+ 
Sbjct: 423 RG-LAGKPDDYKAMEEAVYRRFTGSLQTKMES--------------PDLLLIDGGLGQVR 467

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AAQ  L++  V   + ++ +AK        E   +  GE ++  + DP L  +  LRDE 
Sbjct: 468 AAQKALERAGVS--LPLVGLAKRE------EVLVLPSGERVMRPLDDPGLRLLIHLRDET 519

Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRF +  +R+ R KK   S  D+I GIGP RK++LL+ F T++ +  + PE LA + G++
Sbjct: 520 HRFGLAYNRQLRGKKTLKSVFDDIPGIGPARKKVLLERFSTLEELRATPPERLAELPGMN 579

Query: 597 KKIACKIYNHFHKNTSHT 614
           ++ A  +  H ++  + +
Sbjct: 580 RRAAEAVLRHLNEAAARS 597


>gi|299144096|ref|ZP_07037176.1| excinuclease ABC subunit C [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518581|gb|EFI42320.1| excinuclease ABC subunit C [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 601

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 188/612 (30%), Positives = 298/612 (48%), Gaps = 26/612 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCTEVEALLLE 73
           M DI   ++YVGKA +L+KRI+ Y  S  +++ ++  M+S IN+  + +   E+E+L+LE
Sbjct: 1   MKDINDNIIYVGKAKSLRKRIRQYFSSYGNSNVKVKTMVSNINDFEYIIVENEIESLILE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
           +N+IK   P++NI+LRDDK +PYI IT   + P + + R        YFGP+ +  AV +
Sbjct: 61  SNLIKDNHPKYNIVLRDDKQYPYIKITINERFPRVLRTRLILNDGAKYFGPYPAASAVNE 120

Query: 134 TINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFL 191
            I+  +R F LR+C+ ++ ++  R RPCL + I +C  PC   +  +KY + ++E  +FL
Sbjct: 121 AIDIFERLFKLRTCSLNLEKNNIRYRPCLNYFIGKCLAPCHENVDEDKYNDIINEITEFL 180

Query: 192 SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN----RMDCFSL 247
           SG + N+   +  NMN  + K ++E A   RD + AL  +               D   +
Sbjct: 181 SGKSKNIIHILEENMNMESKKLNFEVAANFRDGIKALEILNEKQIISNTDFSENRDVIGV 240

Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPENILLS 306
                   +Q  F   G+  G   + +K    +    IL+ F++QFY+     P  I++ 
Sbjct: 241 ARGIEQILVQIFFIRAGKIIGREHYIIKDYLNNDIESILNAFIKQFYSGVAFIPREIVVE 300

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLSTEISH 362
            E  +  +LE     +   KV I  PK+G+K+ ++  A  NA                 +
Sbjct: 301 SEPYDKDVLESYLSDKRSGKVSIISPKRGDKKDLVIMAKKNALDMISKYEDNYSEKIKKN 360

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              LK+      L   PKRIE YD S+I G  +V  MVV  +    K+ YRKF      V
Sbjct: 361 TYALKEIQNLLELEVFPKRIESYDISNISGVQSVASMVVFEDGIAKKSDYRKF--KIQSV 418

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD A M+ VL RRF + I  +            SF ++PD+++LDGGKGQ++    +
Sbjct: 419 VGPDDYASMKEVLNRRFIRGIDEKNKNIVS------SFSNFPDLIMLDGGKGQVNIVLEI 472

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L  L +   I +  + K    +       +       L +       I ++++E HRFAI
Sbjct: 473 LLNLGI--NIPVCGLVKDEFHTTRG---IIYNNREFNLKINSNGYRMIYKIQEEVHRFAI 527

Query: 543 TTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
             HR  R K    S LD I+ IG  RK  L+Q F ++  I  +  + L  ++GI+ K A 
Sbjct: 528 NYHRLLRSKNLFKSELDLIDNIGKKRKEYLMQHFKSLDKIKNAELDELLEVKGINSKAAN 587

Query: 602 KIYNHFHKNTSH 613
            IY +FH     
Sbjct: 588 SIYLYFHGGEHG 599


>gi|313827883|gb|EFS65597.1| excinuclease ABC subunit C [Propionibacterium acnes HL063PA2]
          Length = 679

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/579 (30%), Positives = 280/579 (48%), Gaps = 44/579 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  G+V+YVGKA NL+ R+ SY    +    R   M++   ++++TV 
Sbjct: 13  TIPTQPGVYRFSDAHGQVIYVGKAKNLRNRLNSYFQDISALHPRTQRMVTTAAHVQWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVE+L LE   IK   PRFN++ RDDKS+P++  T   + P ++  R +      Y+G
Sbjct: 73  QNEVESLQLEYTWIKEFDPRFNVMYRDDKSYPWLCFTWTDEYPRVFVGRGAHHKGWRYYG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    A+  T+ +L R F +RSC+  VF   +++ RPCLL  I +CS PC   I+S+ +
Sbjct: 133 PFGQAWAIRDTVETLLRVFPMRSCSTGVFNRAKNQGRPCLLGYIGKCSAPCVERITSQAH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E   E   F++G    + +++   M +A+   ++E A + RD L ALS     N  +  
Sbjct: 193 REIADEFCDFMAGRTTKIVKRLESQMAEASENLEFERAAVIRDSLGALSKTLERNAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
                D  S+  +     ++      G+ RG   +      ++  A+++  FL Q Y   
Sbjct: 253 DGTDADVISMALDPLEVGVKIFHVRGGRIRGERGWVADRADDADEAELMETFLTQLYGVN 312

Query: 295 ----------TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
                          P  +++S E     ++      + G  V+I VP++G+K  +++  
Sbjct: 313 ASDGQVRDDGHGNAVPPLVIVSAEPTNPDVMSTILSSERGSHVEIRVPRRGDKATLMDTV 372

Query: 345 LINAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA  +  Q      S        L++  +   L   P RIE YD SHI G + VG MV
Sbjct: 373 TRNAQETLAQHKLKRASDLATRTRALEEIQESLGLDRAPLRIESYDISHIQGTNVVGSMV 432

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE------------- 447
           V  +    K++YR+F++     +  DD A M  VL RR  +LI++ +             
Sbjct: 433 VFEDGMPRKSEYRRFSIKG--FEGSDDFAAMHEVLSRRLRRLIEDRDAMAAAQTPDGDVG 490

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
           +L          F   P ++++DGG  Q+ AAQ VL++  +E+ I +  +AK  +     
Sbjct: 491 SLIDPTTGSPRKFAYAPHLIVVDGGAPQVHAAQQVLEEFGLEDEIALCGLAKRLE----- 545

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
           E +   +   ++L      LY +QRLRDEAHRFAIT HR
Sbjct: 546 EVWLPDEEWPVILPRTSEGLYLLQRLRDEAHRFAITFHR 584


>gi|227535171|ref|ZP_03965220.1| UvrABC system protein C (protein UvrC) [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187216|gb|EEI67283.1| UvrABC system protein C (protein UvrC) [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 632

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 166/611 (27%), Positives = 280/611 (45%), Gaps = 40/611 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG YQM DI G+++YVGKA NL+ R++SY   ++H  ++  M+SQ+ +  F VT T
Sbjct: 43  LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVSQVADFDFIVTST 101

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +I++ +P +NI L+    +PYI IT   + P +          G YFGP+
Sbjct: 102 DKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKIT-HERDPKIEITGTIRKDGGYYFGPY 160

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A +KT++ +Q+ + LR C         RPCL + + +C G C   +  ++Y + + 
Sbjct: 161 PNVYAAQKTMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIE 216

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
             K+FL+G     K  +   M +A     +E A   RD+L  +         I +     
Sbjct: 217 RIKRFLNGNVGKAKASLTAKMERAAKNLQFERAAEIRDQLHYIEQTVEKQKIISHDNTTR 276

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +     +      + +               +   P  
Sbjct: 277 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRKNNVKPRE 336

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358
           +L+    +   L +I        ++ +  P++GEKR ++  A  N+              
Sbjct: 337 VLVPAGLDNKVLADIL-------EIPVRTPQRGEKRDLMALAAKNSQIKLEDKFRLMELD 389

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +    +K+      LP      E +D+SHI G   V  MV   +    KN YRK+ L 
Sbjct: 390 NRTTIGAMKELMAALNLPMG-HVAEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 448

Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
            +      D A   R V+ RR+++L+K                   PD++++DGG+ +++
Sbjct: 449 ADKTHNGADEAANTREVIRRRYTRLLKER--------------APLPDLILMDGGEIEMN 494

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+ VL +  +   I +  + K  K        F    + + L+ +    Y ++R++DE 
Sbjct: 495 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGNADQLINLDPKSQGFYLLERIQDEV 552

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K +  S L+ I G+GP  +  LL+ F T+  I  +  E +  + GIS
Sbjct: 553 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTINKIKEAPLEDIQEL-GIS 611

Query: 597 KKIACKIYNHF 607
           KK+A  +    
Sbjct: 612 KKVAQALKLSL 622


>gi|325859884|ref|ZP_08173014.1| excinuclease ABC, C subunit [Prevotella denticola CRIS 18C-A]
 gi|325482810|gb|EGC85813.1| excinuclease ABC, C subunit [Prevotella denticola CRIS 18C-A]
          Length = 610

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/622 (26%), Positives = 308/622 (49%), Gaps = 50/622 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA NL++R+ SY H      +   ++S+I++I ++V  
Sbjct: 19  NMPEKPGTYQFYDTEHTIIYVGKAKNLKRRVSSYFHKEVDRFKTKVLVSKIHDISYSVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALL+E  +IK+ KP++N+LL+D K++P I +T+    P ++K R+ +   G+++GP
Sbjct: 79  TEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRNINKRYGTFYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ +++ +  R+C      + + + + +PCL + +  C  PC  + S E 
Sbjct: 138 YSHISSMYAVLDIIKKVYKPRTCRFPITKEGIEQRKYKPCLEYHLHNCGAPCIDKQSYED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A++ L G    ++  + + M +   +  +E A + + R  AL +    ++ + 
Sbjct: 198 YQEAIRQAREILKGNTREVQNLLKQQMQKYAEELRFEEAEMCKQRYMALDNFAAKSEIVS 257

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +    ++   +      A I       G    + T+  K   + T+ ++L+  + +  
Sbjct: 258 HTITDVDVFTIIDDDTRKNAFINYIHVKNGAINQSFTYEYKRKLDETDEELLNEAIPEIR 317

Query: 295 TD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                  + I++  E +                    +P++G+K  ++E + +NA +   
Sbjct: 318 ERFNSTAKEIIVPFELDFK-----------IKDASFFIPQRGDKHHLLELSEMNAKQYKF 366

Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
            +L        E     ++++  +K  L  +P +IE +DNS+I G  AV   +V      
Sbjct: 367 DRLKQAEKLNPEQKQTRLMRELQEKLKLTKLPYQIECFDNSNISGTDAVAGCIVYKGMKP 426

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            +  YRK+N+    V   DD A M+ V+ RR+S++ +                   PD++
Sbjct: 427 SRKDYRKYNIKT--VTGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLI 470

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           I DGGKGQ+   + V++   +   I I  +AK  +     E  F    + + L+++  + 
Sbjct: 471 ITDGGKGQMEVVREVIED-ELHLSIPIAGLAKDDRHRT-NELLFGFPQQTIALDVKGELF 528

Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             + +++DE HRFAIT HR +R K   +S LD+I GIG   +  L++   TVK I  S  
Sbjct: 529 KVLTQIQDEVHRFAITFHRNKRSKHQLHSELDDIKGIGMKTREALMKQLRTVKRIKESDI 588

Query: 587 ETLASIEGISKKIACKIYNHFH 608
           +TL  I G SK  A  IYN+FH
Sbjct: 589 QTLTGIIGASK--ATIIYNYFH 608


>gi|327312872|ref|YP_004328309.1| excinuclease ABC subunit C [Prevotella denticola F0289]
 gi|326944775|gb|AEA20660.1| excinuclease ABC, C subunit [Prevotella denticola F0289]
          Length = 610

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 166/622 (26%), Positives = 307/622 (49%), Gaps = 50/622 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA NL++R+ SY H      +   ++S+I++I ++V  
Sbjct: 19  NMPEKPGTYQFYDTEHTIIYVGKAKNLKRRVSSYFHKEVDRFKTKVLVSKIHDISYSVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALL+E  +IK+ KP++N+LL+D K++P I +T+    P ++K R+ +   G+++GP
Sbjct: 79  TEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRNINKRYGTFYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ +++ +  R+C      + + + + +PCL + +  C  PC  + S E 
Sbjct: 138 YSHISSMYAILDIIKKVYKPRTCRFPITKEGIEQRKYKPCLEYHLHNCGAPCIDKQSYED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A++ L G    ++  + + M +   +  +E A I + R  AL +    +  + 
Sbjct: 198 YQEAIRQAREILKGNTREVQNLLKQQMQKYAEELRFEEAEICKQRYMALDNFAAKSKIVS 257

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +    ++   +      A I       G    + T+  K   + T+ ++L+  + +  
Sbjct: 258 HTITDVDVFTIIDDDTRKNAFINYIHVKNGAINQSFTYEYKRKLDETDEELLNEAIPEIR 317

Query: 295 TD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                  + I++  E +                    +P++G+K  ++E + +NA +   
Sbjct: 318 ERFNSTAKEIIVPFELDFK-----------IKDASFFIPQRGDKHHLLELSEMNAKQYKF 366

Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
            +L        E     ++++  +K  L  +P +IE +DNS+I G  AV   +V      
Sbjct: 367 DRLKQAEKLNPEQKQTRLMRELQEKLKLTKLPYQIECFDNSNISGTDAVAGCIVYKGMKP 426

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            +  YRK+N+    V   DD A M+ V+ RR+S++ +                   PD++
Sbjct: 427 SRKDYRKYNIKT--VTGPDDYASMQEVVRRRYSRMQEEG--------------TPLPDLI 470

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           I DGGKGQ+   + V++   +   I I  +AK  +     E  F    + + L+++  + 
Sbjct: 471 ITDGGKGQMEVVREVIED-ELHLSIPIAGLAKDDRHRT-NELLFGFPQQTIALDVKGELF 528

Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             + +++DE HRFAIT HR +R K   +S LD+I GIG   +  L++   TVK I  S  
Sbjct: 529 KVLTQIQDEVHRFAITFHRNKRSKHQLHSELDDIKGIGTKTREALMKQLRTVKRIKESDI 588

Query: 587 ETLASIEGISKKIACKIYNHFH 608
           +TL  I G SK  A  IYN+FH
Sbjct: 589 QTLTGIIGASK--ATIIYNYFH 608


>gi|145629081|ref|ZP_01784880.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21]
 gi|144978584|gb|EDJ88307.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21]
          Length = 553

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/572 (33%), Positives = 312/572 (54%), Gaps = 32/572 (5%)

Query: 52  ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111
           ++ I++I  T+T +E EALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +
Sbjct: 1   MASIHHIDTTLTSSETEALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSY 59

Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
           R S    G YFGP+    AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC
Sbjct: 60  RGSKKFTGEYFGPYPHAGAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPC 119

Query: 172 TG-EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
               +S E+Y + V  A+ FL G +  + + +   M QA+   D+E A  +RD++ A+  
Sbjct: 120 VQGYVSDEEYNQQVELARLFLQGKDQQVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRS 179

Query: 231 IQNHNDS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILS 287
           +           + MD  S+ +   LAC+Q  F   G+  G  ++F K  + +  +++  
Sbjct: 180 VIEKQFVSNERLDDMDIMSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTE 239

Query: 288 YFLRQFY----TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
            F+ QFY      +  P +I++  +  E S LE    +Q G KV I    +G+K K ++ 
Sbjct: 240 TFVGQFYLQGHQGRSIPNSIIVDRQLAEKSELEQLLSEQAGRKVTIQESVKGDKSKYLQL 299

Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
           A +NA  +   +L          +       LP I  R+E +D SH MG   V   VV  
Sbjct: 300 AQVNAKAALNVQLKQSSRMSERYQALCDLLNLPKIK-RMECFDISHTMGNQTVASCVVFN 358

Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463
           + G +K+ YR+FN+    +   DD A M  VL++R+ + ++ ++                
Sbjct: 359 QEGPLKSDYRRFNIEG--ITGGDDYAAMEQVLQKRYERDLEEDK---------------I 401

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFV-KKGEALV 519
           PD++ +DGGKGQL+ A  V + L V+   NR  +I +AKG  R AG E   + K+   + 
Sbjct: 402 PDIIFIDGGKGQLNRALNVFQHLQVKWDKNRPHLIGVAKGVDRRAGQEVLIISKQDREIH 461

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTV 578
           L      L+ IQ +RDE+H  AI+ HRK+R+KA   S L+ I G+G  R++ LL+  G +
Sbjct: 462 LPDDSLALHLIQHIRDESHNHAISGHRKKRQKAFTQSGLETIEGVGAKRRQALLKYLGGL 521

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           + + +++ + +AS+ GIS K+A +I+     +
Sbjct: 522 QGVKKATLDEIASVPGISPKLAERIFETLKND 553


>gi|304413479|ref|ZP_07394952.1| endonuclease subunit of excinuclease UvrABC [Candidatus Regiella
           insecticola LSR1]
 gi|304284322|gb|EFL92715.1| endonuclease subunit of excinuclease UvrABC [Candidatus Regiella
           insecticola LSR1]
          Length = 590

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 203/607 (33%), Positives = 313/607 (51%), Gaps = 33/607 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G V+YVGKA NL+KR+  Y     +  +   ++  I  I  T+T TE EALLLE 
Sbjct: 1   MYDAEGAVIYVGKAKNLKKRLTHYF-GIQNNLKTKSLVKNIVQIDVTITHTETEALLLEH 59

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALY-KHRDSSTIQGSYFGPFASVDAVEK 133
           N IK  +PR+N+LLRDDKS+P+           +      + T +G YFGPF    AV +
Sbjct: 60  NYIKLHQPRYNVLLRDDKSYPFYFF-LVPIFTRVSRYTVVACTKKGEYFGPFPDSYAVRE 118

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLS 192
           T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + ++  + FLS
Sbjct: 119 TLALLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVTGLVSEEEYQQQINYVRLFLS 178

Query: 193 GGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHN 250
           G +  + + +   M +A+    +E A   RD++ A+  +        +    D   +  N
Sbjct: 179 GKDQQVLKNLISRMEKASHLLHFEEAAKLRDQIQAIRRVTEKQFVSGDDENLDVIGVSFN 238

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLS 306
             LACI   F   G+  G+ ++F    S +   +I+  F+ QFY      +  PE     
Sbjct: 239 TGLACIHVLFIRQGKILGSRSYFPHIPSGTELNEIVQTFIGQFYLQGNQSRTLPEEFYWI 298

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
               E  LL  S  +  G K++I    +G + + ++ A  NA  +   +LS   + Q  +
Sbjct: 299 FHLAEKELLSASLSELNGRKIQIQTRPRGARARYLKLAATNAAAALKTRLSQRSTIQQRM 358

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           K+  K   L     R+E +D SH+MG   V   VV   NG ++++YR++++  N +K  D
Sbjct: 359 KELAKVLKLA-SINRLECFDVSHLMGEQTVAACVVFDSNGPLRSEYRRYHI--NGIKPGD 415

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A +  VL RR+ + +                    PDV+ +DGGKGQL+ A  V   L
Sbjct: 416 DYAAISQVLMRRYDKAVDENN---------------IPDVIFIDGGKGQLAQAVNVFSSL 460

Query: 487 NV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           NV   + +  +ISIAKG  R  G+E  F+  +G+   L    P L+ IQ +R++AH  AI
Sbjct: 461 NVSWNKQKPLLISIAKGSDRKEGLETLFLSTRGKGDSLPSDSPALHLIQHIRNDAHNHAI 520

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HRKRR      S L+ I GIG  R+++LL+  G ++ +  +S E +A I  IS+ +A 
Sbjct: 521 TGHRKRRSTVKMASVLEMIEGIGTKRRQMLLKHMGGLQPLLNASIEEIAKIPSISQTLAK 580

Query: 602 KIYNHFH 608
           +I+N   
Sbjct: 581 RIFNTLK 587


>gi|302342099|ref|YP_003806628.1| excinuclease ABC, C subunit [Desulfarculus baarsii DSM 2075]
 gi|301638712|gb|ADK84034.1| excinuclease ABC, C subunit [Desulfarculus baarsii DSM 2075]
          Length = 636

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 200/610 (32%), Positives = 298/610 (48%), Gaps = 32/610 (5%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH----THRITHMISQINNIRFTV 62
           P+ PG Y M D AG+V+YVGKA  L+ R+ SY          T+++  M +++  + F V
Sbjct: 40  PDNPGCYLMKDAAGQVIYVGKAKRLKARLGSYTRPPASHTYYTNKVEAMKAKVAAVEFVV 99

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSY 121
           T ++ EA+LLE  +IKR +PR+N+ LRDDKS+PY  +      P L   R  +      Y
Sbjct: 100 TASDKEAVLLEHTLIKRHRPRYNVELRDDKSYPYFRLALADDFPRLSLVRRPNPADGARY 159

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S  A ++T+  LQR F LR CAD+  ++R RPCL F+  RC GPC G I  E Y 
Sbjct: 160 FGPFDSAGAAKQTLRMLQRIFPLRRCADAALKNRVRPCLDFETGRCLGPCVGAIDREGYQ 219

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           +   +  +F  GG   L  ++   M  A  +E +E A   RDRL AL             
Sbjct: 220 QLARQVLEFFGGGGRRLAAEMEARMLAAAAEERFEDAARLRDRLRALQSTLERQQVSLTD 279

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             ++D  +L+  +    +       G+   +  F  ++++  + A+++   L   Y   P
Sbjct: 280 GSQLDAVALHDAEGALRLAVLKVRLGRVEDSRVFEFESEA-LSPAEVMGQALLSLYATAP 338

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  ILLS   EE  LL     ++ G  V++  P++G+KR ++E A+INA +    + + 
Sbjct: 339 PPPLILLSHLPEEPELLAEVLAERAGRSVELRRPRRGDKRGLLELAMINAGQ---PRAAQ 395

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L    +K  L   P+R+E  D SH+ G   V  +    +    K  YR++ L 
Sbjct: 396 DDDSGPALATLARKLNLAGPPRRMECVDISHLGGRLTVASVAAFEDGRPRKAGYRRYKLL 455

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             +    DD A M   LERR S                       PD++I+DGGKGQL+ 
Sbjct: 456 GQEG-APDDYASMAQALERRLS------------------GDDPPPDLLIVDGGKGQLAV 496

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  VL +L       + +IAKG         F   +   L L  RD  L  + RLRDEAH
Sbjct: 497 AVDVLTRLRPAQAPALAAIAKGQAPGEPDRLFAPGRKNPLNLAARDRALLLVMRLRDEAH 556

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFA+  H+  R KA   S LDEI G+GP RK+ LL +FG++  + R+S   +    G+ +
Sbjct: 557 RFAVEYHKLLRSKALKRSILDEIPGVGPGRKKKLLTAFGSLAALKRASAREMVEQAGLDR 616

Query: 598 KIACKIYNHF 607
             A ++    
Sbjct: 617 PTAGRVEAFL 626


>gi|199598210|ref|ZP_03211632.1| excinuclease ABC subunit C [Lactobacillus rhamnosus HN001]
 gi|258508353|ref|YP_003171104.1| excinuclease ABC subunit C [Lactobacillus rhamnosus GG]
 gi|258539562|ref|YP_003174061.1| excinuclease ABC subunit C [Lactobacillus rhamnosus Lc 705]
 gi|199590971|gb|EDY99055.1| excinuclease ABC subunit C [Lactobacillus rhamnosus HN001]
 gi|257148280|emb|CAR87253.1| Excinuclease ABC subunit C, UvrABC system [Lactobacillus rhamnosus
           GG]
 gi|257151238|emb|CAR90210.1| Excinuclease ABC subunit C, UvrABC system [Lactobacillus rhamnosus
           Lc 705]
 gi|259649667|dbj|BAI41829.1| excinuclease ABC subunit C [Lactobacillus rhamnosus GG]
          Length = 602

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 167/619 (26%), Positives = 284/619 (45%), Gaps = 42/619 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG YQM DI G+++YVGKA NL+ R++SY   ++H  ++  M++Q+ +  + VT T
Sbjct: 13  LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVAQVADFDYIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EA LLE  +I++ +P +NI L+    +PYI IT+  + P +          G YFGP+
Sbjct: 72  NKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKITN-ERDPKIEITGTIRKDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T++ +Q+ + LR C         RPCL + + +C G C   +  ++Y + + 
Sbjct: 131 PNVYAAQETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIA 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
             K+FL+G     K  +   M +A     +E A   RD+L  +         I       
Sbjct: 187 RIKRFLNGNVSKAKASLTAKMERAAKNLQFERAAEIRDQLYYIEQTVEKQKIISTDNTTR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +     +      + +               +   P  
Sbjct: 247 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRKNNVKPRE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358
           +L+    +   L +I        +V +  P++GEKR+++  A  N+              
Sbjct: 307 VLVPAGLDNKVLADIL-------EVPVRTPQRGEKRELMALAAKNSKIKLEDKFRLMELD 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +    +K+      LP     +E +D+SHI G   V  MV   +    KN YRK+ L 
Sbjct: 360 NRTTVGAMKELMAALKLPMG-HVVEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 418

Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
            +      D A   R V+ RR+++L+K    L              PD++++DGG+ +++
Sbjct: 419 ADKTHNGADEAANTREVIRRRYTRLLKEHAAL--------------PDLILMDGGEIEMN 464

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+ VL +  +   I +  + K  K        F    E + L+ +    Y ++R++DE 
Sbjct: 465 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGHADEMINLDPKSQGFYLLERIQDEV 522

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K +  S L+ I G+GP  +  LL+ F T+  I  +  E +  + GIS
Sbjct: 523 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTITKIKEAPLEDIQEL-GIS 581

Query: 597 KKIACKIYNHFHKNTSHTP 615
           K++A  +          TP
Sbjct: 582 KRVAQALKLSL--TADPTP 598


>gi|55379620|ref|YP_137470.1| excinuclease ABC subunit C [Haloarcula marismortui ATCC 43049]
 gi|73920300|sp|Q5UY89|UVRC_HALMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|55232345|gb|AAV47764.1| UvrABC system protein C [Haloarcula marismortui ATCC 43049]
          Length = 581

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 182/613 (29%), Positives = 289/613 (47%), Gaps = 52/613 (8%)

Query: 5   QMPECPGVYQM---LDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            +P  PGVY      D   RVLYVGKA +L+ R++SY  ++  + RI  M+ +   I F 
Sbjct: 12  SLPREPGVYLFEQGRDDKRRVLYVGKAVDLRDRVRSY--ADPRSERIAKMVERAETIDFA 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE +ALLLEAN+IKR +P +N+ L+DDKS+P + +T  H +P +   RD      + 
Sbjct: 70  VTDTETQALLLEANLIKRHRPPYNVRLKDDKSYPLVQLT-DHPVPRIEVTRDP-ADGATV 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPF     VE  + +L+  + LR C+D  + +R RPCL +++  C+ PCTGEI    Y 
Sbjct: 128 YGPFTDKGRVETVVKALREAYGLRGCSDHKYSNRDRPCLDYEMGICTAPCTGEIGEADYA 187

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           E      ++  G    L + + R M  A   +++E A   RD+L A+  +    D+    
Sbjct: 188 EDAEAVTRYFEGETGVLADPLRREMEAAAQNQEFERAANLRDKLGAVEALHGEGDTAVSD 247

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              Y   D          A +       G+        L+       A +   F+ Q+Y 
Sbjct: 248 SGGYQTTDVLGAAIEGERAIVARLHAEGGKLVERDRHTLEAPDGEGTAGVYRAFIPQYYA 307

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           ++  P+ IL +E   +  +      +     V + VP  G +  +++ AL NA +     
Sbjct: 308 ERELPDRILCAEAPADPDIEAWLESEG----VTLGVPGAGREATLVDLALKNARQ----- 358

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                     L D          P RIE +D SH  G SAVG  V   +    K+ YR+ 
Sbjct: 359 RGGTDDESGRLADALGIDH----PSRIEGFDVSHAQGRSAVGSNVTFVDETPEKSDYRRK 414

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            L        DD A MR +L  R ++ ++  ++               PD++++DGG GQ
Sbjct: 415 KLTEQ----NDDYANMRELLRWRATRAVEGRDDRPD------------PDLLLIDGGDGQ 458

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           L AA+  L +   +  +  I++AK        E+  +        N   P L+ +QR+RD
Sbjct: 459 LGAARDALAETGWD--VPAIALAKD-------EELVITPDRVYDWNDDAPQLHLLQRIRD 509

Query: 536 EAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           EAHRFA+  H+  R + + + LD++ GIGP  ++ LL+ FG+V  +  +S E L +I+GI
Sbjct: 510 EAHRFAVQYHQTLRDEVSTT-LDDVPGIGPETRKRLLRRFGSVDSVRAASDEELTAIDGI 568

Query: 596 SKKIACKIYNHFH 608
            ++ A  I     
Sbjct: 569 GEQTAETIRTRLQ 581


>gi|260591944|ref|ZP_05857402.1| excinuclease ABC subunit C [Prevotella veroralis F0319]
 gi|260536228|gb|EEX18845.1| excinuclease ABC subunit C [Prevotella veroralis F0319]
          Length = 610

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/625 (26%), Positives = 309/625 (49%), Gaps = 50/625 (8%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +PE PG YQ  D    ++YVGKA NL+ R+ SY +      +   ++S+I++I +TV 
Sbjct: 18  QSLPEKPGTYQYYDSEHTIIYVGKAKNLKSRVSSYFYKEVDRFKTKVLVSKIHDISYTVV 77

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE +ALL+E  +IK+ KP++N+LL+D K++P I +T+    P ++K R  +   G+++G
Sbjct: 78  NTEEDALLIENQLIKQYKPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRTINKHSGTFYG 136

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSE 178
           P++ + ++   +  +++ +  R+C   + +      + +PCL + +  C  PC  + S E
Sbjct: 137 PYSHIGSMYAILEIIKKLYKPRTCRYPITKEGIEQGKYKPCLEYHLHNCGAPCINKQSYE 196

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E + +A++ L G   N+++ + + M +   +  +E A + + R  AL +    N+ +
Sbjct: 197 DYQEAIKQAQEILKGNTRNVQQMLKQKMQKYAEELKFEDAELCKQRYLALDNFAAKNEIV 256

Query: 239 YNRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
              +    ++   +      A +       G    + T+  K   + T+ ++L+  + + 
Sbjct: 257 SYTITDVDVFTIIDDDSRKNAFVNYIHVKNGAINQSFTYEYKRKLDETDEELLNLAILEI 316

Query: 294 YTD-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
               K   + I++  E +                 +  +PK+G+K  ++E + +NA +  
Sbjct: 317 RERFKSTAKEIIVPFELDFK-----------IKDAEFVIPKRGDKWHLLELSEMNAKQYK 365

Query: 353 TQKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
             +L        E     ++++  KK  LP +P +IE +DNS+I G  AV   +V     
Sbjct: 366 FDRLKQMEKLNPEQKQTRLMRELQKKLKLPKLPYQIECFDNSNISGSDAVAGCIVYKGMK 425

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
             K  YRK+N+    V   DD A M+ V+ RR+ ++ +                   PD+
Sbjct: 426 PSKKDYRKYNIKT--VVGPDDYASMQEVVRRRYIRMQEEG--------------SPLPDL 469

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +I DGGKGQ+   + V++   +   I I  +AK  K     E  F    + + L+++  +
Sbjct: 470 IITDGGKGQMEVVREVIED-ELHLNIPIAGLAKNDKHRT-NELLFGFPQQVVALDVKSEL 527

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
              + +++DE HR+AI+ HR +R K   +S LD I GIGP  K +LL+   +VK I  + 
Sbjct: 528 FRVLTQIQDEVHRYAISFHRNQRSKHQLHSELDNIKGIGPKTKDMLLKKLKSVKNIKEAD 587

Query: 586 PETLASIEGISKKIACKIYNHFHKN 610
            + L SI G SK  A  +YN+FH  
Sbjct: 588 RQILTSIIGASK--ASLVYNYFHAE 610


>gi|313115220|ref|ZP_07800703.1| excinuclease ABC subunit C [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622449|gb|EFQ05921.1| excinuclease ABC subunit C [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 631

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 170/611 (27%), Positives = 287/611 (46%), Gaps = 15/611 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64
           +P  PGVY + D    ++Y+GKA  L+ R+  Y      H ++++ MI+        V  
Sbjct: 29  LPLLPGVYIIRDKTDTIIYIGKAKRLRIRVSQYFREGVPHDNKVSQMIAHAYAFDVIVCQ 88

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LEA+ IK   P++NILL+DDK + YI +T K   P L            Y GP
Sbjct: 89  SEFEALVLEASQIKAHTPKYNILLKDDKGYSYIKVT-KEPWPRLSFVLQKEEDDAEYIGP 147

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           + S  A  +   +    F L  C     +   + RPCL   I +C   C+G IS E Y +
Sbjct: 148 YTSSFAARQMAETAMDAFLLPRCNKRFPQEIGKGRPCLNAHIGKCMAVCSGRISCENYNQ 207

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241
            V  A   +  G  ++ + +   M +A+ + ++E+A + RD++AA++ +      I +  
Sbjct: 208 AVKSAVHLIRYGKKDILKILNERMQEASDRLEFETAALLRDQIAAITKVSAGQKVIVDPD 267

Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
             MD  +L    +  C     F  G+       FL  D+    A    +  R +  D+  
Sbjct: 268 VEMDVVALAGTPDSVCAAVLRFRDGR-LTDKREFLFHDTSDIAAVREEFLPRYYLDDEQI 326

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ I + E   ++  L+ +  ++ G +V++ VP++G+K  ++E A  NA     ++    
Sbjct: 327 PKIIAVDELPPDSDALQQALNEKRGSEVQLYVPQRGDKAHLVEMAHTNAVERLARESGRY 386

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
              + +L +  +   L   P+ IE YD S+    S+V  MV   +    K  YRKF +  
Sbjct: 387 AREEKLLDELAQVLGLAKPPRAIESYDISNWGDGSSVCGMVTFKDGKPYKAGYRKFKMKT 446

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V   DD A +   + RR ++  K  E L    +     F   PD++++DGG+GQ+SAA
Sbjct: 447 --VAGTDDYASLAETVSRRAAEYEKYAE-LAKKGEPCSNWFGQKPDLLLMDGGRGQVSAA 503

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           +  L    + + + +  + K               G  + +NM      FI  ++DE HR
Sbjct: 504 KDALAGTALAD-VPLYGMVKDDHHRTRA--IVDSNGREIAINMNRGTFTFITAIQDETHR 560

Query: 540 FAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA    +++ K K+  S L EI GIGP   + L+  F +V  +  ++P+ L +  G+ K+
Sbjct: 561 FANAYRKQQMKQKSYSSTLTEIPGIGPKTAKALMAQFKSVGAVKEATPDQLENTPGVGKQ 620

Query: 599 IACKIYNHFHK 609
            A  IY +FH+
Sbjct: 621 TAQIIYAYFHE 631


>gi|169335028|ref|ZP_02862221.1| hypothetical protein ANASTE_01434 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257766|gb|EDS71732.1| hypothetical protein ANASTE_01434 [Anaerofustis stercorihominis DSM
           17244]
          Length = 622

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 175/622 (28%), Positives = 315/622 (50%), Gaps = 24/622 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +PE  GVY M D  G ++YVGKA  L+ R+  Y   N NHT ++  M+  I +  +
Sbjct: 12  KIKLLPENSGVYLMKDENGTIIYVGKAKVLKNRVTQYFRKNSNHTPKVLKMVENIADFEY 71

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T  E+EAL+LE N+IK+ +P +NIL+RDDK++PYI IT K + P L+  R        
Sbjct: 72  IITNNEMEALILECNLIKKYRPYYNILMRDDKTYPYIKITIKDEYPKLFVTRKYINDGNK 131

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+A+    +K ++++   + +  C   +     +   CL + I +C G C G I ++
Sbjct: 132 YFGPYANATYAKKAVSTINELYPIAMCKKELKSGVKKGNVCLNYHIGQCLGVCQGNIDTK 191

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            Y  ++ E    L+G    + + +   MN  +   D+E+A   RD++ A+  +++  +  
Sbjct: 192 LYNRYIKEIIDILNGKTSKIIQSLENKMNGYSENLDFENAGKVRDKIFAIRGLKSEQNVS 251

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               + MD   L   +++AC+Q       +  G   + LK  +E   +++L+ F++QFYT
Sbjct: 252 NANADNMDILGLAMAEDMACVQVYALRDKKIVGRENYILKGQNEKDVSEVLAAFIKQFYT 311

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           + P  P  IL+ +E E+   ++         KV+I VP +GEK+K+++ A  NA  +   
Sbjct: 312 NTPFIPPLILVEKEFEDIDNIKDLLTNLKSKKVEIKVPVKGEKKKLLKLATDNAKLNLEN 371

Query: 355 KLSTEISH----QMILKDFTKKFAL-PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
            +  E       +  +++  K   +      R E YD S+  G  +VG MVV        
Sbjct: 372 IIGKEKQKALMEKKAVEEINKYANISKEGNFRYEAYDISNTSGVDSVGVMVVFDGAKRNY 431

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRKF +    ++  +D   M  V+ RR ++  K  +  + +P+     F   PDV+ +
Sbjct: 432 KAYRKFKVKS--IEGPNDYGSMVEVVFRRLNRAQKELKQNDDNPR-----FLPLPDVIFV 484

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGG G ++A + V+   +    I ++ + K  K    +++      EA  +   +     
Sbjct: 485 DGGIGHVNAVKNVVDTFDF--NIKVLGLGKNNKHK--LKEVVKNNEEARNIRDFEFAGKL 540

Query: 530 IQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +  + +E HRFAI  H+  R K+   + L+EI GIG ++ R LL+ F  ++ +  +S E 
Sbjct: 541 LNDISEEVHRFAIDYHKNLRSKSFLKTTLEEIEGIGKVKCRNLLKHFKNMEELKNASIEE 600

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           +  ++G+++++A K+ +HF  +
Sbjct: 601 IVKVDGMNEELAKKVKDHFKND 622


>gi|325283193|ref|YP_004255734.1| UvrABC system protein C [Deinococcus proteolyticus MRP]
 gi|324315002|gb|ADY26117.1| UvrABC system protein C [Deinococcus proteolyticus MRP]
          Length = 609

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/621 (27%), Positives = 289/621 (46%), Gaps = 41/621 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P   GVY      G  +Y+GKA NL+ R+  +  +   + + T +    + + F  T  
Sbjct: 9   LPVTSGVYIFR-KGGTPIYIGKANNLRGRVMQHFKAGGKSGKFTAL---ADELEFITTKG 64

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEAL+LEAN+IK+ +P +N+LL+D K +P++ +T++   P L   R   +   SY+GP+
Sbjct: 65  EVEALVLEANLIKQHRPHYNVLLKDGKHYPFLKLTNEE-FPMLIVTRKVLSDGASYYGPY 123

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               AV +  + +   F LR  +    + + RPCL + + RC  PC        Y + V 
Sbjct: 124 PDASAVRRVKHLIDTMFPLRKNSGLPMKLKPRPCLNYHMGRCLAPCIQAADPLAYAQVVD 183

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL----AALSHIQNHNDSIYNR 241
           + K  L G    +  ++   M +A L++D+E A   RDR+        + Q+   S    
Sbjct: 184 DVKALLEGRAAPVLRRLREEMKEAALRQDFEMAARLRDRVSAVEKLFGNEQHAFISEEAD 243

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CP 300
           +D   +      A +Q      G+       FL  D  ST  +ILS F++ +YT     P
Sbjct: 244 LDFLGVAQAGEYAMVQLFRMRGGRVVSRDKRFLTGDEASTPGEILSAFMQDYYTQATHLP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS--T 358
             +LL  E E+T+L      ++ G++V + +P++G+K  ++E A  NA      +L+   
Sbjct: 304 PLVLLPAELEDTALWAEFLSERAGHRVSVRLPRRGDKVDLVEMAQRNAGHGLESELAVLE 363

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  L    +  AL   P RIE YDNS++ G   V  M+V+      K++YR+F + 
Sbjct: 364 RRGDHPGLDALREVLALADRPWRIEGYDNSNLFGTHIVSGMIVLEGGRARKSEYRRFKVR 423

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              +   DD A MR  + RRF+  + ++  L                     GG+GQ++A
Sbjct: 424 G--LDHPDDYAAMRQTVYRRFTGSLSDKLPLPDLLLID--------------GGRGQVNA 467

Query: 479 AQGVLKKLNVENRITIISIAKGPKRS-----AGMEKFFV-----KKGEALVLNMRDPILY 528
           A   LK+  V  ++ ++ +AK  +        G + +         G+ L+L    P L 
Sbjct: 468 ALDALKEAGV--QVPVVGLAKREEIIVLPSPYGAQWWLTGGTVLGDGKELILPHTHPALR 525

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +   RDE H +A++ +RK R +    S  D++ GIG  R+  LL+ F +++ +  +   
Sbjct: 526 VLIHARDEVHHYAVSYNRKLRGQAMTASIFDDLPGIGQKRRDALLEHFTSLEELRAADVA 585

Query: 588 TLASIEGISKKIACKIYNHFH 608
            +A++ G+  K A  +     
Sbjct: 586 HIAAVPGMGMKAAQAVKAFLQ 606


>gi|241895539|ref|ZP_04782835.1| excinuclease ABC subunit C [Weissella paramesenteroides ATCC 33313]
 gi|241871117|gb|EER74868.1| excinuclease ABC subunit C [Weissella paramesenteroides ATCC 33313]
          Length = 597

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/606 (27%), Positives = 286/606 (47%), Gaps = 41/606 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG YQM D  G+++YVGKA NL+ R++SY   + HT +   +++ I +  F VT +
Sbjct: 13  LPELPGSYQMKDKDGKIIYVGKAKNLKNRVRSYF-KSEHTGKTEQLVANIADFDFIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE  +I++ +P +NI L+    +PYI IT+  + P +    + +   G YFGP+
Sbjct: 72  EKESLLLEITLIQKYQPYYNIRLKRGTGYPYIKITN-ERDPQILLANEVADDGGHYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T++ LQ+ + LR C         RPCL   I +C G C  E+  E Y E + 
Sbjct: 131 PNVYAAQETLHFLQKVYPLRRCNGYQ----GRPCLYANIGQCLGACYKEVPEEVYNEQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           + K+FL G    + + + + M +A     YE A   RD+L  +         I       
Sbjct: 187 KIKRFLDGDTKVVTKMLQKKMAEAAANLAYERAADLRDQLKFIEATVEKQKIISRDGTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y N+    +Q  F    +              +               +   P+ 
Sbjct: 247 DIFNFYMNRGWLSVQVFFIRQARLMKREKRLFAIVGSAQEELTSFILQFYNRQNAVLPKE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLST 358
           IL+    ++ ++ ++           +  P++GEKR ++E A  NA              
Sbjct: 307 ILVPAGVDKEAISQVLNI-------PVRTPQRGEKRALLELAGKNAKIVLDEKFRLLEMN 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++      +P    RIE +D+SH+ G   V  MVV  +    KN+YR     
Sbjct: 360 ESKTSGAMQEIADALNIP-EIHRIEAFDHSHLQGSDMVSAMVVFEDGVPNKNKYR--KYK 416

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  D+ A    V+ RR+++L+K                   PD++++DGG  QL+A
Sbjct: 417 NKTVENADERAETMEVIRRRYTRLLKEH--------------SEMPDLILMDGGVIQLNA 462

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ V++   +   I + ++ K  +     +    +    + L+      Y +QR++DE H
Sbjct: 463 AREVIED-ELGLSIPVAAMVKNDQHKTA-DLLKEEGAAHVHLDPNSQGFYLLQRIQDEVH 520

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RF IT HR+   K++  S LD I G+GP  ++ LL ++G++  ++ +S + L  + GIS+
Sbjct: 521 RFVITFHRQLHSKSSLGSRLDGIAGVGPKTRQKLLTTYGSMNKMASASLDDLKKL-GISE 579

Query: 598 KIACKI 603
           ++A  I
Sbjct: 580 RVANNI 585


>gi|170017685|ref|YP_001728604.1| excinuclease ABC subunit C [Leuconostoc citreum KM20]
 gi|169804542|gb|ACA83160.1| Excinuclease ABC, C subunit [Leuconostoc citreum KM20]
          Length = 574

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/602 (27%), Positives = 286/602 (47%), Gaps = 40/602 (6%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D  G+++YVGKA NL+ R++SY    +H+ +   ++  I +  + VT ++ EA LLE 
Sbjct: 1   MKDKNGKIIYVGKAKNLKNRVRSYF-KQDHSGKTAELVQNITDFDYIVTNSDKEAFLLEN 59

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
            +IK+ KP +NI L+    +PYI IT K + P +    +     G YFGP+ +V A ++T
Sbjct: 60  ELIKKYKPYYNIRLKYGTGYPYIKIT-KERDPKMALVNEVKRDGGFYFGPYPNVYAAQET 118

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           +  L++ + LR C         RPCL + + +C GPC  ++  + Y + +   K FL G 
Sbjct: 119 LRFLEKNYPLRRCNGYQ----GRPCLYYNMGQCLGPCWHDVPQKAYDDQIARIKHFLDGN 174

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSLYHNK 251
             ++K+ IA+ M  A    ++E A   RD+L  +                 D F+ Y +K
Sbjct: 175 TASVKKAIAQKMQIAAETLEFERAADLRDQLKYIDETVESQRVLSKDTTPRDLFNYYLDK 234

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
               ++  F    +              +    +          +   P  +L+ +  + 
Sbjct: 235 GWMTVEVFFLRQARLIRQYKQTFSVVGAADEEMMNFMQQFYAQRNIQKPNEVLVPKGIDT 294

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLSTEISHQMILK 367
            +L E+           + VP +GEKR +++ A  NA  +           E      ++
Sbjct: 295 NALSEMLQI-------PVRVPVRGEKRDLLDLAQKNARIALEEKFRLMQLNEKKTTGAMR 347

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           + T    +P    RIE +D+SH  G   V  MVV  +    K+ YRK+ +    V   D+
Sbjct: 348 EITHALNIPMGK-RIEAFDHSHTQGVEIVSAMVVFDDGVPNKDLYRKYKIKS--VSHADE 404

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            +  + V+ RR+S+++K                   PD++++DGG+ QL AA+ VL+   
Sbjct: 405 WSETQEVIRRRYSRILKEG--------------GEMPDLILMDGGEIQLHAAKEVLEDEL 450

Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547
               + I ++ K  K     +    + GE +VL+ +    + IQR+++E HRFAI  HR+
Sbjct: 451 GLTSLPIAAMVKNDKHKTA-DLIDGRTGEVVVLSKQSEGFFLIQRVQEEVHRFAINFHRQ 509

Query: 548 RRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            R K +  S LD I+G+GP  ++ LL+ FG++  I+ +S E L +I GI++K+A  I+  
Sbjct: 510 LRSKNSLASRLDMIDGVGPKTRQKLLREFGSLPKIAGASIEALQAI-GINEKLARVIHMS 568

Query: 607 FH 608
             
Sbjct: 569 LK 570


>gi|116491096|ref|YP_810640.1| excinuclease ABC subunit C [Oenococcus oeni PSU-1]
 gi|118586932|ref|ZP_01544365.1| excinuclease ABC, C subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290890599|ref|ZP_06553670.1| hypothetical protein AWRIB429_1060 [Oenococcus oeni AWRIB429]
 gi|122276722|sp|Q04EZ7|UVRC_OENOB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|116091821|gb|ABJ56975.1| Excinuclease ABC subunit C [Oenococcus oeni PSU-1]
 gi|118432659|gb|EAV39392.1| excinuclease ABC, C subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290479727|gb|EFD88380.1| hypothetical protein AWRIB429_1060 [Oenococcus oeni AWRIB429]
          Length = 607

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 181/609 (29%), Positives = 298/609 (48%), Gaps = 47/609 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG YQM D  G+++YVGKA NL+ R++SY     HT +   +++ I++  F VT +
Sbjct: 13  LPSQPGSYQMKDKNGKIIYVGKAKNLKNRVRSYF-KAEHTGKTAELVANIHDFEFIVTNS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +IKR +P FNI L+   S+PYI IT+  + P L          G+YFGP+
Sbjct: 72  DKEAFLLENTLIKRYRPYFNIRLKFSGSYPYIEITN-ERDPRLILANTLKHDHGTYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +T++ L+ T+ LR C         RPCL + + +C G C   +  E+Y + + 
Sbjct: 131 PNVYAASETLHFLEMTYPLRRCNGYQ----GRPCLYYSMGQCLGACWRTVPQEEYQKNID 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
              +FL+G        I + M +A+   +YE A   RDRL  +         + N     
Sbjct: 187 AITRFLNGETGKAISDIKKKMKRASDSTEYELAADFRDRLKFIDQTVESQRVLQNDHTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC--P 300
           D F+ Y +K    I+  F   G+        L      +  + L  +++QFY+ K    P
Sbjct: 247 DLFNFYMDKGWMTIEIFFLRQGRLLRQQKETL--ALADSVKEELESYIQQFYSQKNAQKP 304

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKL 356
           + +L+ +  +   L E         ++ +  P +GEKR +++ A  NA            
Sbjct: 305 KEVLVPKNVDTKLLAE-------TLEIPVRTPVRGEKRDLLKLAAKNARITLEDKFRLME 357

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             E      +K+ T    +PH   R E +D+S+  G + V  +VV  +    KN YR++ 
Sbjct: 358 LNEEKTTGAMKEITDALKIPHG-YRFEAFDHSNTQGSNYVSALVVFEDGLPNKNLYRRYK 416

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           L       QD+      V+ RR+++L    +               +PD++++DGG+ QL
Sbjct: 417 LRTP--TGQDEAKATFEVITRRYTRLRDEGQ--------------MYPDLILMDGGEIQL 460

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
            +A+  L+KL+++  I + ++ K  K           +GE L L+      Y +QR++DE
Sbjct: 461 HSAEAALRKLDID--IPVAAMVKNDKHQTAD--LLNSRGENLFLDPHSQGFYLLQRIQDE 516

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            HRF IT HR+ R K    S LDEI GIGP  +  L++ FG++  I+ +S E + ++ GI
Sbjct: 517 VHRFVITFHRQLRTKTNLSSRLDEIAGIGPKSRVKLMRRFGSLPKIADASIEDIEAL-GI 575

Query: 596 SKKIACKIY 604
            +K+A  + 
Sbjct: 576 GEKVATLVK 584


>gi|256829175|ref|YP_003157903.1| excinuclease ABC subunit C [Desulfomicrobium baculatum DSM 4028]
 gi|256578351|gb|ACU89487.1| excinuclease ABC, C subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 605

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 178/604 (29%), Positives = 280/604 (46%), Gaps = 35/604 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
             P CPGVY M +  GR++YVGKA +L++R+ SY    +    ++  M++++  I F  T
Sbjct: 9   SFPTCPGVYLMKNATGRIIYVGKAKHLRRRLASYFQPEHRLAPKVRVMMTRVETIDFLCT 68

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEA++IK+ +P++NI+LRDDK +    ++  H  PAL   R        YFG
Sbjct: 69  STEKEALLLEASLIKKHRPKYNIVLRDDKQYVLFCLSRNHPFPALRLTRKVLRDGSVYFG 128

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PF S  +  +T   + R F LR C D+VF +RTRPCL + I RC GPC   +S E+Y + 
Sbjct: 129 PFTSALSARETKRVIDRLFPLRKCRDTVFSNRTRPCLQYHIGRCLGPCCLPVSEEEYRQV 188

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242
           V   + FLSG +  L   +   M + +   D+E A   RD + AL        ++ +   
Sbjct: 189 VRRVELFLSGKSDELMAGLHDQMMRLSDALDFEGAARLRDSIRALRETVERQAAVLSDGR 248

Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI---LSYFLRQFYTDK 297
             D   ++ ++N A +   F   G+      F+    +  T          FL Q+Y  +
Sbjct: 249 DLDVIGVHGHENGAALAIVFVRQGRIIDGQAFWFADAAVDTPEAEAGLTDSFLMQYYNAE 308

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
                 +++    +   LE +     G +  +   +  ++R++++ A  NA         
Sbjct: 309 RFIPARIITAFGSQDPALEDALADMRGGRASVAKARGDQERRLVDIATANAK----AHAL 364

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            +        +      +    +RIE  D SHI G      MVV  +    K+ YR ++ 
Sbjct: 365 RQRRTIPTRAELAGVLGVEGEVERIECVDASHIQGEGMRVGMVVFVDGREEKSAYRVYSF 424

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
              +    D  A+      R                     S P WPD++++DGGKGQL 
Sbjct: 425 PELEGTADDYLALASFAARR-------------------AKSGPPWPDLLLIDGGKGQLG 465

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGME---KFFVKKGEALVLNMRDPILYFIQRLR 534
           A +  + +  +   + + SIAKG  R AG      F   +   L L    P L F+Q +R
Sbjct: 466 AVERAMAENGLS-AVPLASIAKGVSRRAGELGDVIFRPGRKNPLNLRPGSPELLFLQHVR 524

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AHRF I+  R+ +R     S LD + GIGP   RLL   F +V+ ++++  E LA++ 
Sbjct: 525 DTAHRFVISRLRRHKRAAQLSSDLDNLPGIGPKTARLLWDHFDSVQAMTQARIEDLAALP 584

Query: 594 GISK 597
           G   
Sbjct: 585 GFGP 588


>gi|229552148|ref|ZP_04440873.1| excision endonuclease subunit UvrC [Lactobacillus rhamnosus LMS2-1]
 gi|229314450|gb|EEN80423.1| excision endonuclease subunit UvrC [Lactobacillus rhamnosus LMS2-1]
          Length = 614

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 165/611 (27%), Positives = 282/611 (46%), Gaps = 40/611 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG YQM DI G+++YVGKA NL+ R++SY   ++H  ++  M++Q+ +  + VT T
Sbjct: 25  LPDLPGSYQMKDINGKIIYVGKAKNLKNRVRSYF-KSSHDGKVAAMVAQVADFDYIVTST 83

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EA LLE  +I++ +P +NI L+    +PYI IT+  + P +          G YFGP+
Sbjct: 84  NKEAFLLEITLIQKYQPYYNIKLKKGTGYPYIKITN-ERDPKIEITGTIRKDGGYYFGPY 142

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A ++T++ +Q+ + LR C         RPCL + + +C G C   +  ++Y + + 
Sbjct: 143 PNVYAAQETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFRTVPEKEYTDQIA 198

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
             K+FL+G     K  +   M +A     +E A   RD+L  +         I       
Sbjct: 199 RIKRFLNGNVSKAKASLTAKMERAAKNLQFERAAEIRDQLYYIEKTVEKQKIISTDNTTR 258

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +     +      + +               +   P  
Sbjct: 259 DLFNFYMDKGWISIQVFFIRQARLMKRESRLFPVVNTAKEEFESFILQFYSRKNNVKPRE 318

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR----SHTQKLST 358
           +L+    +   L +I        +V +  P++GEKR+++  A  N+              
Sbjct: 319 VLVPAGLDNKVLADIL-------EVPVRTPQRGEKRELMALAAKNSKIKLEDKFRLMELD 371

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +    +K+      LP     +E +D+SHI G   V  MV   +    KN YRK+ L 
Sbjct: 372 NRTTVGAMKELMAALKLPMG-HVVEAFDHSHIQGADPVSAMVQFVDGQPAKNNYRKYKLD 430

Query: 419 PNDVKTQDDCAMM-RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
            +      D A   R V+ RR+++L+K    L              PD++++DGG+ +++
Sbjct: 431 ADKTHNGADEAANTREVIRRRYTRLLKEHAAL--------------PDLILMDGGEIEMN 476

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+ VL +  +   I +  + K  K        F    E + L+ +    Y ++R++DE 
Sbjct: 477 AAKDVL-ENELNLDIPVAGMVKNNKHKTAA-LLFGHADEMINLDPKSQGFYLLERIQDEV 534

Query: 538 HRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT HR+   K +  S L+ I G+GP  +  LL+ F T+  I  +  E +  + GIS
Sbjct: 535 HRFAITFHRQLHAKNSLASRLEGIKGVGPKTRLKLLRKFKTITKIKEAPLEDIQEL-GIS 593

Query: 597 KKIACKIYNHF 607
           K++A  +    
Sbjct: 594 KRVAQALKLSL 604


>gi|33240404|ref|NP_875346.1| excinuclease ABC subunit C [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|81664511|sp|Q7VBY8|UVRC_PROMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|33237931|gb|AAP99998.1| Nuclease subunit of the excinuclease complex [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 640

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 193/627 (30%), Positives = 305/627 (48%), Gaps = 27/627 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61
            + +P+ PG Y M D    ++Y+GK+ NL  R+KSY    N++  + + M+ Q++ I F 
Sbjct: 21  LDNIPKAPGCYLMKDNEDNIIYIGKSINLNSRVKSYFRRRNDNNPKNSLMLKQVSLIDFI 80

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--IQG 119
           VT  E+EAL LE+N+IK  +P +NILL+DDK +PY+ IT     P +   R       + 
Sbjct: 81  VTDNELEALNLESNLIKSNQPHYNILLKDDKKYPYLCITWSEDYPRILIVRRRRNRADKD 140

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+  V ++  T+  +++ F LR     +++ +T  CL + I RC G C   ISS  
Sbjct: 141 RYYGPYVDVTSLRNTLFLIKKIFPLRQRQRPLYKDKT--CLNYSIGRCPGVCQKIISSSD 198

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI- 238
           Y   + + +  + G    LK+ +   M+  + +  YE A+  +++L+ L+          
Sbjct: 199 YRTVIKKVEMIIQGRTSELKKLLEEKMHIYSKEMKYEEALKIKNQLSGLNTFSQTQKITE 258

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +   N +   IQ      G+      F   +   +    I       +  
Sbjct: 259 PDSSINRDVIAHASNDSNTSIQLFQIRAGKLIARLAFTADSIKTNKENIIQKVIEEHYSQ 318

Query: 296 DKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             P   P+ ILL  + E+  ++     +  G KV I +PK  +K  ++     NA    T
Sbjct: 319 LDPVVIPKEILLDNQIEKIEVISEWLSEMKGSKVNIKIPKISKKANMVSLVKKNAELELT 378

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +         + L++  +   LP  P+RIE YD SHI G  AVG  VV  E    K+ YR
Sbjct: 379 KLSKGVEKANLALEELAELLDLPFKPRRIEGYDISHIQGSDAVGSQVVFVEGMPAKHHYR 438

Query: 414 KFNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP--------SW 463
           KF +    +K    DD   +  ++ RRFS+  K +E        + Y            +
Sbjct: 439 KFIIKDETIKLGHSDDYLSIYELITRRFSRWSKYKEKGVNLSDIRNYKSSILDPSTLADF 498

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PD+V++DGGKGQL+ A   L+KLN+   I + S+AK  +     + F     + L  N  
Sbjct: 499 PDLVMIDGGKGQLNIALKALEKLNLSEDIKLCSLAKKNE-----DIFIPGNNKPLKCNND 553

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
           D  L  ++RLRDEAHRFA+T HRKRR      + L EI GIGP R + LL  F +V+ I 
Sbjct: 554 DNGLLLLRRLRDEAHRFAVTFHRKRRTLGMRRTELTEIPGIGPKRIKALLLHFNSVQAIK 613

Query: 583 RSSPETLASIEGISKKIACKIYNHFHK 609
            +  E +AS  G+ +++A  I+N+F+K
Sbjct: 614 MARKEEIASAPGVGRELAEHIWNYFNK 640


>gi|291518013|emb|CBK73234.1| excinuclease ABC, C subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 561

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 178/570 (31%), Positives = 299/570 (52%), Gaps = 22/570 (3%)

Query: 51  MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110
           M+  I+   F VT +E+EAL+LE N+IK  +P++N +LRDDK++PYI +T     P +  
Sbjct: 1   MVQNIDYFEFIVTDSEMEALILECNLIKEYRPKYNTMLRDDKTYPYIEVTLTEAYPRVLF 60

Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCS 168
            R        +FGPF S  AV  TI+ +Q+ + +R+C+  +  +  + RPCL + I +C 
Sbjct: 61  SRRLKKNGSKFFGPFTSAGAVHDTIDLVQKLYKIRTCSQKLPENFGKNRPCLNYHIGQCL 120

Query: 169 GPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL 228
           GPC G +   +Y + V +   FL+G  ++  + +   M  A+ + D+E A ++RD + ++
Sbjct: 121 GPCQGNVDQNEYRKNVEKVIDFLNGDYYDTLKDLEEKMLLASEELDFEKAALYRDLIESV 180

Query: 229 SHIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI 285
                   +        D  ++  +   A +Q  F   G+  G   FF+    + T+ ++
Sbjct: 181 KACAGRQKATQLDGEDRDIIAMAKSNEDAVVQVFFIRGGKMIGREHFFINIRVDDTDEEL 240

Query: 286 LSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
           + YFL+ +YT  P  P  I +  + EE  L+E     + G +V +  PK+G K K++E A
Sbjct: 241 IQYFLKDYYTGTPFVPREIFVQYDLEEAELIENWLTNKKGARVYLRTPKRGAKEKLVELA 300

Query: 345 LINAH----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
             NA     +   +    E      +K+ +    LP+   R+E +D S+I G  +VG MV
Sbjct: 301 AKNAQMVLDQDREKIKKEEGRTIGAMKEISSLLGLPNAS-RMEAFDISNISGFQSVGSMV 359

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460
           V  +    ++ YRKF +    V+  +D A M  VL+RRFS  ++    L  +    E SF
Sbjct: 360 VFEKGKPKRSDYRKFKIKT--VEGPNDYASMYEVLKRRFSHGLEE---LEENGGVIEDSF 414

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
             +PD++++DGGKGQ+  A+ V+ +L +   I I  + K              K + L +
Sbjct: 415 TKFPDIIMMDGGKGQVHIAEQVIAELGLH--IPIAGMVKDDHHRTRG---LYYKNQELPI 469

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579
           +        I RL+DEAHRFAI  HR  R K   +S LD+I+GIGP R++ L++ F +  
Sbjct: 470 DTHSEGFKLITRLQDEAHRFAIEYHRSLRSKGQVHSFLDDISGIGPKRRKALMKRFISAD 529

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHK 609
            ++ ++ E LA+ EG++++ A  +YN+FH 
Sbjct: 530 KMAEATLEELAATEGMNQEAASNVYNYFHP 559


>gi|313887475|ref|ZP_07821164.1| excinuclease ABC, C subunit [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923117|gb|EFR33937.1| excinuclease ABC, C subunit [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 609

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 189/622 (30%), Positives = 305/622 (49%), Gaps = 49/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PG YQ  +  G ++YVGKA NL+ R+ SY +++    + T ++S+I  + + V  
Sbjct: 12  TIPQDPGCYQYRNKNGTIIYVGKAKNLRNRVSSYFNNSPKDPKTTRLVSEIRQLEYFVVN 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+IK   P++NILL+DDKS+P I+IT     P ++  R     +G Y+GP
Sbjct: 72  SEAEALVLENNLIKTHLPKYNILLKDDKSYPRIVIT-SEPFPRIFATR-KEEGKGDYYGP 129

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           + +V      I+ + R   LRSC      + V   R   CL + IK+C GPC G +S+E+
Sbjct: 130 YPNVAMAHTVIDLIHRVLQLRSCRYALTPEVVRERRVDLCLQYHIKKCGGPCQGLVSAEE 189

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   V  A++ L G  + L E+    MN+ + + ++E A  HR  +  L      +    
Sbjct: 190 YAHAVQLARRILKGEINILIEEEVEEMNRMSERLEFERAEQHRQNIETLRRYSGKHVVAP 249

Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           N  +     ++++      C      G          K   +S+ + +LSY + +     
Sbjct: 250 NIHEADVFAYDEDDVNGFVCMMQVRHGAVVLAHNLTFKKTVDSSRSDLLSYLIEELRQRF 309

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS------ 351
                 ++  +  E                +ITVP++GEK++++E A +N  R       
Sbjct: 310 GSTAREVILADPGEWE----------SDSYRITVPQRGEKKQLLELAQLNVSRYRWDCYK 359

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +KL+ E     +L    K   +  +P+ +E +DNS+I G + V   VV       K++
Sbjct: 360 RQEKLNPEQRATRLLTTMKKDLGIDRLPRHMECFDNSNIQGTNPVAACVVFKNGKPAKSE 419

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF++    V   DD   MR ++ RR+ +++   + L              PD++I+DG
Sbjct: 420 YRKFHVKT--VVGADDYRTMREIIYRRYRRVLDEGQPL--------------PDLIIIDG 463

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQL  A   LK+L + +++ +  +A         E +   + E LVL+ R   L  + 
Sbjct: 464 GKGQLHVACETLKELGIYDKVCVFGLA-----ERFEELYRPGESEPLVLDRRSETLKVVC 518

Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDEAHRF IT HR  R K    S LDEI GIG   K  LLQ+F T + + ++S   L 
Sbjct: 519 HIRDEAHRFGITFHRDSRSKQQTKSILDEIPGIGARSKETLLQAFKTPQRVVKASRAELI 578

Query: 591 SIEGISKKIACKIYNHFHKNTS 612
           +  G SK    K+YNH H + +
Sbjct: 579 ATLGTSKG--NKLYNHLHPDEA 598


>gi|160947769|ref|ZP_02094936.1| hypothetical protein PEPMIC_01704 [Parvimonas micra ATCC 33270]
 gi|158446903|gb|EDP23898.1| hypothetical protein PEPMIC_01704 [Parvimonas micra ATCC 33270]
          Length = 620

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 182/622 (29%), Positives = 303/622 (48%), Gaps = 28/622 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P+ PGVY M D   +++YVGK+ +L+ R++SY  +N+   ++  M+  I+   + 
Sbjct: 13  ELKKLPDLPGVYIMYDKDDKIIYVGKSVSLKNRVRSYFTTNHKYKKVQAMVEHIHRFEYI 72

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E E+L+LEAN+IK+ +P++NI L+DDK +PYI IT+  K P + K RD    +  Y
Sbjct: 73  IVNNETESLVLEANLIKKNRPKYNINLKDDKQYPYIKITN-EKFPKILKVRDIKEDKAQY 131

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT--RPCLLFQIKRCSGPCTGEISSEK 179
           FGPF ++  +EK +      + +R C  +  + +   RPC+ + + RCS PCT  I  E 
Sbjct: 132 FGPFPTISDLEKLMELSILIYNIRDCKLNFDKGKFLQRPCMSYYLGRCSAPCTQNIDREN 191

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYE---SAIIHRDRLAALSHIQNHND 236
           Y   V    KFLSG    +KE +   M Q++ KE+YE           +  L   Q  N 
Sbjct: 192 YNNDVKRVIKFLSGDTTEIKEILLNRMKQSSAKEEYELAMKYRDFLSEIDYLFTKQIFNI 251

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
             +      S  + +N+  +     + G       F ++   +    ++ S  +RQFY  
Sbjct: 252 KKFKEYHLISYAYAENILVVAIFIVNDGLVVDRKHFIVENILDLEVEELFSNVIRQFYIS 311

Query: 297 KPCPENILLSEEAEETSLLEISFFKQY---GYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                  +  + ++E  L EIS F         + +  PK+G K   ++    NA+   T
Sbjct: 312 HHNKVKEVYIDYSDEKFLNEISLFLANIFSEKSISVKNPKKGVKFDQMKILQKNANEILT 371

Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           + +         +   +        + ++  RIE YD S+I G   VG MVV        
Sbjct: 372 KHIFDNKNINVKYLQAINYLKNILDIDNLD-RIECYDISNISGDFNVGSMVVYKNGFKSS 430

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YRKF +    V  QDD +  R +L RRF++ +  + N          SF   PD++++
Sbjct: 431 KDYRKFKIKT--VVGQDDYSSHREMLTRRFNRFLDEKIN------SAGSSFSEKPDLILM 482

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKG ++ A+ VL + N++  + +I + K  K       F   +   + L++   I  F
Sbjct: 483 DGGKGHVNVAKEVLLEKNLD--VPVIGLVKNDKHRTKGIIF---EDNYIELDINTNIYRF 537

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +  +++E HRFAI  HR  + KK   S LDEI G+G ++K  LL  FG++  I ++S E 
Sbjct: 538 LFDIQEEVHRFAINYHRSLQNKKLQNSVLDEIKGVGEIKKIKLLSHFGSISSIKKASVEE 597

Query: 589 LASIEGISKKIACKIYNHFHKN 610
           L  ++ + KK A  I+  F+  
Sbjct: 598 LLMVDKMDKKTAKNIFEFFNNE 619


>gi|295102428|emb|CBK99973.1| Excinuclease ABC subunit C [Faecalibacterium prausnitzii L2-6]
          Length = 617

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 165/611 (27%), Positives = 291/611 (47%), Gaps = 15/611 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64
           +P  PGVY + D +G ++Y+GKA  L+ R+  Y      H ++++ MI+        V  
Sbjct: 13  LPLLPGVYIIRDKSGTIIYIGKAKRLRIRVSQYFREGVPHDNKVSQMIAHAYAFDVIVCQ 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LEA+ IK   P++NILL+DDK + YI +T     P L            Y GP
Sbjct: 73  SEFEALVLEASQIKAHTPKYNILLKDDKGYSYIKVTKDE-WPRLSFTLQKEDDGAEYIGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           + S  A  +   +    F L  C+    +   R RPCL   I +C   C+G+IS E Y +
Sbjct: 132 YTSSFAARQMAETAMDAFLLPRCSRRFPQEIGRGRPCLNAHIGKCMAVCSGKISRENYEQ 191

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241
            V  A   +  G  ++ + +   M +A+ + ++E+A + RD++AA++ +      + +  
Sbjct: 192 AVKSAVHLIRYGKKDILKTLNERMLEASDRLEFETAALIRDQIAAITKVTAGQKVVVDPD 251

Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
             MD  +L       C     F  G+       FL  D+    A    +  R +  D+  
Sbjct: 252 VEMDVVALAGTPGSVCAAVLRFREGR-LTDKREFLFHDTADIAAVREEFLPRYYLDDEQI 310

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ I + E   +   L+ +  ++ G +V++ VP++G+K  ++E A  NA     ++    
Sbjct: 311 PKVIAVDELPPDVDALQQALNEKRGSEVQLYVPQRGDKAHLVEMAHTNAVERLARESGRY 370

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
              + +L +  +   LP  P+ IE YD S+    ++V  MV   +    K  YRKF +  
Sbjct: 371 AREEKLLDELAQVLGLPKPPRTIESYDISNWGDGTSVCGMVTFRDGKPYKAGYRKFKMKT 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V   DD A +   + RR ++  K  E +  + +     F   PD++++DGG+GQ+SAA
Sbjct: 431 --VAGTDDYASLAETVSRRAAEYEKYSE-MAANGEPSSNCFGQKPDLLLMDGGRGQVSAA 487

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           +  L    + + + +  + K              +G  + +NM      F+  ++DE HR
Sbjct: 488 KAALAGTALAD-VPLYGMVKDDHHRTRA--IVDSEGREIAINMNRGTFTFVTAIQDETHR 544

Query: 540 FAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA    +++ K K+  S L E+ G+GP   + L+  F +V  +  ++P+ L +  G+ ++
Sbjct: 545 FANAYRKQQMKQKSYSSTLTEVPGVGPKTAKALMTQFKSVGAVKEATPDQLENTPGVGRQ 604

Query: 599 IACKIYNHFHK 609
           +A  IY +FH 
Sbjct: 605 MAQTIYEYFHP 615


>gi|262038633|ref|ZP_06012001.1| excinuclease ABC, C subunit [Leptotrichia goodfellowii F0264]
 gi|261747339|gb|EEY34810.1| excinuclease ABC, C subunit [Leptotrichia goodfellowii F0264]
          Length = 593

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 185/616 (30%), Positives = 294/616 (47%), Gaps = 39/616 (6%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59
           +  + MP  PGVY M +I G+++YVGKA NL+ R+ SY  + N+H  +   ++  I++I 
Sbjct: 8   VEYKNMPNSPGVYLMKNINGKIIYVGKAKNLKNRVSSYFKNINSHNVKTLELVKNIDDIE 67

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--I 117
           F +  TEVEAL+LE N+IK+ +P++NILL+D+K++PYI  T + K P +   R +     
Sbjct: 68  FFICKTEVEALILENNLIKKYRPKYNILLKDEKTYPYIKFT-REKFPKIEIVRSTKKLNE 126

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +  YFGP+ S       + +L R F +R C  S+    T PCL + +  C+ PC  +   
Sbjct: 127 KADYFGPYPSGIFF--AVKTLLRIFPVRDCKRSM-EKVTIPCLKYFMNTCTAPCKYKDIE 183

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E+Y E V   K FL G    + + + + M + +   ++E A+  R+++ AL  +      
Sbjct: 184 EEYNENVDNFKNFLKGQRTEIFDVLEKRMKKFSDNMEFERALAERNKIEALKKLLQTQII 243

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
            Y+     D F       +  +       G+        +  +    +  +    +  +Y
Sbjct: 244 EYSKEIDEDVFVFEETSEMVFLCVLNIREGKVINKNHIKISLERGHEDN-LFERLVTSYY 302

Query: 295 TDKPCPENILLSEEAEETS--LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
             +  P+NI+   +  E    + E +  ++              +++++E   +N     
Sbjct: 303 EKRNIPKNIISDVKYNENEELIKEWAKIEKEKDIKLHFPKINSRRQQLLEMGYLNLKEEV 362

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +    +   Q  L+    +  L   P+RIE +D S+I G  AV  M V         +Y
Sbjct: 363 GKHFRQKKIVQEGLQKLKIELQLKEQPQRIECFDISNIQGKDAVAAMTVAINGEVEPREY 422

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           R F +   D    DD  MMR  L RR+S+L + E                +P+++++DGG
Sbjct: 423 RHFKITVKDTP--DDFLMMREALTRRYSKLSEEE----------------FPNLILIDGG 464

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQL  A  VL+KL       IISIAK  +     E F   + E  +    D  L  +QR
Sbjct: 465 KGQLGIAVDVLEKLGKIEFTDIISIAKREE-----EIFKSYESEPYIFEKTDETLKILQR 519

Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRF IT HRK R K    S LD+I GIGP RK+ L+  FGT+  I  ++ E L  
Sbjct: 520 LRDEAHRFGITHHRKLRSKRNIKSALDDIEGIGPKRKKELINKFGTIGNIRNATIEELIE 579

Query: 592 IEGISKKIACKIYNHF 607
           I  + +K+A  I    
Sbjct: 580 I--VPEKVAVSIKEML 593


>gi|157413345|ref|YP_001484211.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9215]
 gi|157387920|gb|ABV50625.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT
           9215]
          Length = 644

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 191/627 (30%), Positives = 299/627 (47%), Gaps = 37/627 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+  G Y   DI   +LY+GK+  L+ R+ SY ++ ++ T R++ M+ QI  I   VT
Sbjct: 34  EIPKSSGCYLFKDIDNNLLYIGKSKKLRSRVSSYFNNFSDLTPRLSLMVRQITEIEIIVT 93

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG--SY 121
            +E EAL LE+N+IK  KP FNILL+DDK +PY+ IT   K P ++  R          Y
Sbjct: 94  DSEYEALNLESNLIKANKPYFNILLKDDKKYPYLCITWSEKYPRIFITRKRRNRNNLDRY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+  V  +  T+  +++ F LR    S              +  +G    +ISSE+Y 
Sbjct: 154 YGPYVDVGLLRNTLFLIKKIFPLRHSKLSK----------SFYREITGVDLEKISSEEYR 203

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + V +A     G N +L   +   M+  +    YE A   RD+++ L  +          
Sbjct: 204 KIVKQASMVFQGRNDDLIRILEEKMSYFSNDLQYEKAAKIRDQISGLKLLTESQKISVPD 263

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F +   KN+A IQ      G+  G   +  K     + ++IL     + Y + 
Sbjct: 264 SSINRDIFGIVSEKNIASIQIFQMRSGKLIGRIGYSQKL-EGISESEILQRVFEEHYINV 322

Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  IL+  E      LE    ++   KVKI+ PK+  K K IE    NA     +
Sbjct: 323 DGIEIPSEILVQYEFTNKLTLEEWLSQRKQKKVKISNPKRSNKLKTIEMVQKNAKLELNR 382

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            L+    ++  ++D ++   L   PKRIE YD SHI G   V   VV  +    K  YRK
Sbjct: 383 ILNGIQDNESAIEDLSQILELNTHPKRIEGYDISHIQGSDPVASQVVFIDGIPSKQNYRK 442

Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS--------FPSWP 464
           + +  N+V     DD A +  V+ RRF +  + + +                   F  WP
Sbjct: 443 YKIKDNNVYIGHSDDYASIYEVIYRRFKKWSRYKNDGGDLSYLTSSKNNIINNELFSDWP 502

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D+V++DGGKGQL++A   L+ LN+E  + + S+AK  +     E +     + L  +M  
Sbjct: 503 DLVMIDGGKGQLNSAIKALQDLNLEKDVILCSLAKKNE-----EIYVPGLSKPLKTDMNQ 557

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             +  ++RLRDEAHRFA++ HR +R K    S L +I G+G  R + LL+ F +V  I  
Sbjct: 558 KGVMLLRRLRDEAHRFALSFHRNKRSKRMNRSQLTQIPGLGSSRIKDLLEYFKSVDAIRI 617

Query: 584 SSPETLASIEGISKKIACKIYNHFHKN 610
           +S + L  ++G+    A  IYN F+ +
Sbjct: 618 ASKDELMKVKGLGANTANDIYNFFNND 644


>gi|257438675|ref|ZP_05614430.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165]
 gi|257198904|gb|EEU97188.1| excinuclease ABC subunit C [Faecalibacterium prausnitzii A2-165]
          Length = 615

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 165/611 (27%), Positives = 292/611 (47%), Gaps = 17/611 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64
           +P  PGVY + D +  ++Y+GKA  L+ R+  Y      H ++++ MI+        V  
Sbjct: 13  LPLLPGVYIIRDKSDTIIYIGKAKRLRIRVSQYFREGVPHDNKVSQMIAHAYAFDVIVCQ 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LEA+ IK   P++NILL+DDK + YI +T +   P L            Y GP
Sbjct: 73  SEFEALVLEASQIKAHTPKYNILLKDDKGYSYIKVT-REAWPRLSFVLQKEEDDAEYIGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYME 182
           + S  A  +   +    F L  C+    +   + RPCL   I +C   C+G+IS E Y +
Sbjct: 132 YTSSFAARQMAETALDAFLLPRCSKRFPQDIGKGRPCLNAHIGKCMAVCSGKISCENYNQ 191

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR- 241
            V  A   +  G  ++ + +   M +A+ + ++E+A + RD++ A++ +      + +  
Sbjct: 192 AVKNAVHLIRYGKKDILKILNERMLEASDRLEFETAALLRDQINAITKVTAGQKVVVDPE 251

Query: 242 --MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
             MD  +L    +  C     F  G+       FL  D+    A    +  R +  D+  
Sbjct: 252 VEMDVVALAGTPSSVCAAVLRFREGR-LTDKREFLFHDTADIAAVREEFLPRYYLDDEQI 310

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ I + E   ++  L+ +  ++ G +V++ VP++G+K  ++E A  NA     ++    
Sbjct: 311 PKIIAVDELPPDSEALQQALNEKRGSEVQLYVPQRGDKAHLVEMAHTNAVERLARESGRY 370

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
              + +L +  +   L   P+ IE YD S+    ++V  MV   +    K  YRKF +  
Sbjct: 371 AREEKLLDEMAQVLGLSKPPRTIESYDISNWGDGTSVCGMVTFRDGKPYKAGYRKFRMKT 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V   DD A +   + RR ++  K    L    +  +  F   PD++++DGG+GQ+SAA
Sbjct: 431 --VLGTDDYASLAETVSRRAAEYEKYA-ALAAQGQGSDNYFGQKPDLLLMDGGRGQVSAA 487

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           +  L   ++ + + +  + K              +G  + +NM      FI  ++DE HR
Sbjct: 488 KAALAGTSLAD-VPLYGMVKDDHHRTRA--IVDSEGREIAINMNRGTFTFITAIQDETHR 544

Query: 540 FAITTHRKR--RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           FA    RK+  RKK+  S L E+ G+GP   + L+  F +V  +  ++P+ L +  G+  
Sbjct: 545 FANAY-RKQQMRKKSYSSTLTEVPGVGPKTAKALMTQFKSVGAVREATPDQLENTPGVGP 603

Query: 598 KIACKIYNHFH 608
           ++A  IY++FH
Sbjct: 604 QLAQTIYDYFH 614


>gi|297565936|ref|YP_003684908.1| excinuclease ABC subunit C [Meiothermus silvanus DSM 9946]
 gi|296850385|gb|ADH63400.1| excinuclease ABC, C subunit [Meiothermus silvanus DSM 9946]
          Length = 594

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 180/610 (29%), Positives = 284/610 (46%), Gaps = 36/610 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PGVYQ       V+YVGKA +L+ R+ SY H      +   + S+ + + F VT  
Sbjct: 9   LPEAPGVYQWW-KGSSVIYVGKAKSLKARVSSYFHGEG---KALTIASEADRLEFIVTRD 64

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEALLLEAN+IK  +PR+N+L++DDK +P++ +T+    P L   R        Y+GPF
Sbjct: 65  EVEALLLEANLIKLHRPRYNVLMKDDKHYPFLKLTN-EPYPILLIVRRVDNDGARYWGPF 123

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               AV +    + R F +R  +    + R  PCL F + RC  PC G+     Y E V 
Sbjct: 124 PDGGAVRRIKRLIDRIFPIRKNSGVPLKKRRYPCLNFSMGRCLAPCIGQADPAAYREMVR 183

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQNHNDSIYNR 241
           + ++ L G    L   +   M QA   +D+E A   RD++         +Q   D     
Sbjct: 184 QVEQVLDGKVSELLGDLELKMRQAARNQDFERAAEIRDQMEAVRSFFGTVQQAYDPELGD 243

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
           +D   L      A +Q      GQ  G  + F++   E+++ ++L  FLR +Y +     
Sbjct: 244 LDFLGLARAGRYAIVQLYQVRGGQMLGRNSRFIEDVEEASDQELLWAFLRDYYLEATPLP 303

Query: 302 NILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--HTQKLST 358
            ++L   E E+   L      + G KV++ +P++G+K +++E A  NA  +     +L  
Sbjct: 304 PLVLLPSEVEDMGALSQFLSSRAGKKVEVRIPQRGDKTRLLELAEKNARTALETEMRLLE 363

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  L        L   P RIE YD S++ G S V  + V       K +YR+  + 
Sbjct: 364 RKGDHPGLVALKDVLGLSVRPYRIEGYDISNLFGESPVASITVFEGGRPKKAEYRRMKIK 423

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            +  K+ DD   +   + RRF+  +               +  + PD++++DGG GQ+ A
Sbjct: 424 TDS-KSPDDYLALEQAIYRRFTGSL--------------SASMAVPDLLLIDGGLGQVRA 468

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           AQ  L++  +  +I ++ +AK        E   +  G ++ L +  P L  +   RDE H
Sbjct: 469 AQKGLERAGI--QIPLVGLAKRE------ETLILPNGRSIELPLTHPALQLLIFQRDETH 520

Query: 539 RFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
              +  HRK R  KA  S  D I GIGP RK  LL  F T++ +     E LA + G+ K
Sbjct: 521 NNGLQFHRKLRSQKALKSVFDNIPGIGPKRKEALLAQFSTLEELKAMDAERLAKLPGMDK 580

Query: 598 KIACKIYNHF 607
           + A  +    
Sbjct: 581 RSAEAVLKAL 590


>gi|256845361|ref|ZP_05550819.1| excinuclease ABC, C subunit [Fusobacterium sp. 3_1_36A2]
 gi|256718920|gb|EEU32475.1| excinuclease ABC, C subunit [Fusobacterium sp. 3_1_36A2]
          Length = 589

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 186/613 (30%), Positives = 309/613 (50%), Gaps = 39/613 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M     +V+YVGKA NL+ R+ SY +  +   +   ++  I +I F +T 
Sbjct: 7   DIPESPGVYLMK-KNDKVIYVGKAKNLKNRVSSYFNRVHENEKTNELVKNIEDIEFFLTN 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           TE++ALLLE N+IK+  P++NILL+D+K++P+I I+ K   P++   R +       G Y
Sbjct: 66  TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKSGEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +  N L + F +R C   + +   RPCL + +K C+GPC  +   E+Y 
Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKVSPRPCLKYYMKSCTGPCVYKDIKEEYN 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V   K+   G    L  ++   M++A+   D+E +II+R+++  L  I +     Y R
Sbjct: 183 KDVENLKQVFRGNTSKLINELTTLMDKASQDMDFEKSIIYREQIKELKAIASSQIIQYER 242

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      + A I       G+  G  +  +   ++ T+  I       +Y+   
Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301

Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P++++L  E E     +++    ++   K       +  ++++++ A  N  R      
Sbjct: 302 LPKSLVLDAEYENELAVVVKALTNEEGKKKEFHFPKIKSRRKELLDMAYKNLERDLETYF 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +  +KD      L   P++IE +D S+I G  AV  M V  E    + +YRKF 
Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD +MMR V+ERR+S+L   +                +PDV+++DGG GQ+
Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  VL++L   +   ++S+AK  +     E +   +     L+     L   QR+RDE
Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESIPYSLSKDMEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K    S LD+INGIG +R++ LL  FG++  I ++S E L  I  +
Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKINGIGEVRRKKLLTKFGSISGIKKASIEELKEI--V 576

Query: 596 SKKIACKIYNHFH 608
            +K+A +I N   
Sbjct: 577 PEKVALEIKNKIR 589


>gi|332299653|ref|YP_004441574.1| UvrABC system protein C [Porphyromonas asaccharolytica DSM 20707]
 gi|332176716|gb|AEE12406.1| UvrABC system protein C [Porphyromonas asaccharolytica DSM 20707]
          Length = 609

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 189/622 (30%), Positives = 306/622 (49%), Gaps = 49/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PG YQ  +  G ++YVGKA NL+ R+ SY +++    + T ++S+I  + + V  
Sbjct: 12  TIPQDPGCYQYRNKNGTIIYVGKAKNLRNRVSSYFNNSPKDPKTTRLVSEIRQLEYFVVN 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LE N+IK   P++NILL+DDKS+P I+IT     P ++  R     +G Y+GP
Sbjct: 72  SEAEALVLENNLIKTHLPKYNILLKDDKSYPRIVIT-SEPFPRIFATR-KEEGKGDYYGP 129

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           + +V      I+ + R   LRSC      + V   R   CL + IK+C GPC G +S+E+
Sbjct: 130 YPNVAMAHTVIDLIHRVLQLRSCRYALTPEVVRERRVDLCLQYHIKKCGGPCQGLVSAEE 189

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   V  A++ L G  + L E+    MN+ + + ++E A  HR  +  L      +    
Sbjct: 190 YAHAVQLARRILKGEINILIEEEVEEMNRMSERLEFERAEQHRQNIETLRRYSGKHVVAP 249

Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           N  +     ++++      C      G          K   +S+ + +LSY + +     
Sbjct: 250 NIHEADVFAYDEDDVNGFVCMMQVRHGAVVLAHNLTFKKTVDSSRSDLLSYLIEELRQRF 309

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS------ 351
                 ++  +  E +              +ITVP++GEK++++E A +N  R       
Sbjct: 310 GSTAREVILADPGEWA----------SDSYRITVPQRGEKKQLLELAQLNVSRYRWDCYK 359

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +KL+ E     +L    K   +  +P+ +E +DNS+I G + V   VV       K++
Sbjct: 360 RQEKLNPEQRATRLLTTMKKDLGIDRLPRHMECFDNSNIQGTNPVAACVVFKNGKPAKSE 419

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF++    V   DD   MR ++ RR+ +++   + L              PD++I+DG
Sbjct: 420 YRKFHVKT--VVGADDYRTMREIIYRRYRRVLDEGQPL--------------PDLIIIDG 463

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQL  A   LK+L + +++ +  +A         E +   + E LVL+ R   L  + 
Sbjct: 464 GKGQLHVACETLKELGIYDKVCVFGLA-----ERFEELYRPGESEPLVLDRRSETLKVVC 518

Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDEAHRF IT HR  R K    S LDEI GIG   K  LLQ+F T + + ++S   L 
Sbjct: 519 HIRDEAHRFGITFHRDSRSKQQTKSILDEIPGIGARSKETLLQAFKTPQRVVKASRAELI 578

Query: 591 SIEGISKKIACKIYNHFHKNTS 612
           +  G SK    K+YNH H + +
Sbjct: 579 ATLGTSKG--NKLYNHLHPDEA 598


>gi|254526395|ref|ZP_05138447.1| excinuclease ABC, C subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221537819|gb|EEE40272.1| excinuclease ABC, C subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 644

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 192/627 (30%), Positives = 298/627 (47%), Gaps = 37/627 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+  G Y   DI   +LY+GK+  L+ R+ SY ++ ++ T R++ M+ QI  I   VT
Sbjct: 34  EIPKSSGCYLFKDIDNNLLYIGKSKKLRSRVSSYFNNFSDLTPRLSLMVRQITEIEIIVT 93

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS--STIQGSY 121
            +E EAL LE+N+IK  KP FNILL+DDK +PY+ IT   K P ++  R          Y
Sbjct: 94  DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEKYPRIFITRKRRNRNDLDRY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+  V  +  T+  +++ F LR    S              +  +G    +ISSE+Y 
Sbjct: 154 YGPYVDVGLLRNTLFLIKKIFPLRHSKLSK----------SFYREITGLDLEKISSEEYR 203

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + V +A     G N +L   +   M+  +    YE A   RD+++ L  +          
Sbjct: 204 KIVKQASMVFQGRNDDLIRILENKMSYFSNDLQYEKAAKIRDQISGLKLLTESQKISVPD 263

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F +   KN+A IQ      G+  G   +  K     + ++IL     + Y + 
Sbjct: 264 SSINRDIFGIVSEKNIASIQIFQMRSGKLIGRIGYSQKL-EGISESEILQRVFEEHYINV 322

Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  IL+  E      LE    +    KVKI  PK+  K K IE    NA     +
Sbjct: 323 DGIEIPSEILVQYEFTNKQTLEEWLSQLKQKKVKILNPKRSNKLKTIEMVQKNAKLELNR 382

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            L+    ++  ++D ++   L   PKRIE YD SHI G   V   VV  +    K  YRK
Sbjct: 383 ILNGIQDNESAIEDLSQILELNTHPKRIEGYDISHIQGSDPVASQVVFIDGIPSKQNYRK 442

Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS--------FPSWP 464
           + +  N+V     DD A +  V+ RRF +  + +++                   F  WP
Sbjct: 443 YKIKDNNVYIGHSDDYASIYEVIYRRFKKWSRYKKDGGDLSYLINSKNNVINKELFSDWP 502

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D+V++DGGKGQL++A   L+ LN+E  + + S+AK  +     E +     + L  +M  
Sbjct: 503 DLVMIDGGKGQLNSAIKALEDLNLEKDVILCSLAKKKE-----EIYVPGLSKPLNTDMNQ 557

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             +  ++RLRDEAHRFA++ HR +R K    S L +I G+G  R + LL+ F +V  I  
Sbjct: 558 KGVMLLRRLRDEAHRFALSFHRNKRSKRMNKSQLTQIPGLGSSRIKDLLEHFNSVDAIRI 617

Query: 584 SSPETLASIEGISKKIACKIYNHFHKN 610
           +S E L  ++G+    A  IYN F+ +
Sbjct: 618 ASKEDLMKVKGLGANTANDIYNFFNND 644


>gi|228469910|ref|ZP_04054849.1| excinuclease ABC subunit C [Porphyromonas uenonis 60-3]
 gi|228308545|gb|EEK17333.1| excinuclease ABC subunit C [Porphyromonas uenonis 60-3]
          Length = 602

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 188/626 (30%), Positives = 304/626 (48%), Gaps = 49/626 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PG YQ  +  G ++YVGKA NL+ R+ SY +++    + T ++S+I  + + V  
Sbjct: 12  TIPQEPGCYQYRNKNGTIIYVGKAKNLRNRVSSYFNNSPKNPKTTRLVSEIRQLEYFVVN 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EAL+LE N+IK   P++NILL+DDKS+P I+IT     P ++  R     +G YFGP
Sbjct: 72  TEAEALVLENNLIKTHLPKYNILLKDDKSYPRIVIT-DEPFPRIFATRKEV-GKGDYFGP 129

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           + +V      I+ + R   LRSC      + V   R   CL + IK+C GPC G +S+E+
Sbjct: 130 YPNVAMAHTVIDLIHRVLQLRSCRYALTPEVVRERRVDLCLQYHIKKCGGPCQGFVSAEE 189

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   V  A++ L G    L E+    MN+ + + ++E A  HR  +  L      +    
Sbjct: 190 YDHSVQLARRILKGEISILIEEEVEEMNRMSERLEFERAEQHRQNIEVLRRYSGKHVVAP 249

Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           N  +     ++++      C      G          K   +S+ + +L+Y + +     
Sbjct: 250 NIREADVFAYDEDDVNGFVCMMQVRHGAVVLAHNLTFKKTVDSSRSDLLAYLIEELRQRF 309

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------HRS 351
                 ++  E  E                +ITVP++GEK+ +++ A +N          
Sbjct: 310 GSTAREVILAEPGEWE----------SDSYRITVPQRGEKKHLLDLAQVNVSGYRWDCYK 359

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +KL+ E     +L    K   +  +P+ +E +DNS+I G + V   VV       K++
Sbjct: 360 RQEKLNPEQRATRLLTTMKKDLGIDRLPRHMECFDNSNIQGTNPVAACVVFKNGKPAKSE 419

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF++    V   DD   MR ++ RR+ +++   ++L              PD++I+DG
Sbjct: 420 YRKFHVKT--VVGADDYRTMREIIYRRYRRMLDEGQSL--------------PDLIIIDG 463

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQL  A   LK+L++ +++ +  +A         E +   + E LVL+ R   L  + 
Sbjct: 464 GKGQLHVACDTLKELDIYDKVCVFGLA-----ERFEELYRPGESEPLVLDRRSETLKVVC 518

Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            +RDEAHRF IT HR  R K    S LDEI GIG   K  L+++F T + + ++S   L 
Sbjct: 519 HIRDEAHRFGITFHRDSRSKQQTKSILDEIPGIGARSKETLMRAFKTPQRVVKASRAELI 578

Query: 591 SIEGISKKIACKIYNHFHKNTSHTPT 616
              G SK    K+YNH H + +   T
Sbjct: 579 ETLGASKGS--KLYNHLHPDENIETT 602


>gi|94987143|ref|YP_595076.1| nuclease subunit of the excinuclease complex [Lawsonia
           intracellularis PHE/MN1-00]
 gi|119367663|sp|Q1MQH2|UVRC_LAWIP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|94731392|emb|CAJ54755.1| Nuclease subunit of the excinuclease complex [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 621

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 193/634 (30%), Positives = 288/634 (45%), Gaps = 51/634 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFT 61
              +P  PGVY   D  GR++YVGKA NL+KR+ SY       T +   M++  N +   
Sbjct: 6   PSSIPTTPGVYLYKDSQGRIIYVGKARNLRKRVLSYFRDGLVITPKTKAMMNHANLLETI 65

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEA++IK+ +PR+NI+LRDDK +    I      P L   R S      Y
Sbjct: 66  STNTEKEALLLEASLIKKHRPRYNIVLRDDKQYLLFRIQKGIPFPRLEIVRQSYKDNAVY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S  +V  T   + + F LR C+D VF +R RPCL F +++C  PCT E+  + Y 
Sbjct: 126 FGPFTSGTSVRDTWKFIHKIFPLRRCSDKVFNNRIRPCLYFYLQQCLAPCTEEVDPKDYA 185

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             + + + FLSG +  L E + ++M  A+   ++E A   RD++ A+ H       +   
Sbjct: 186 VLIQKVELFLSGKSKELVELLQKDMLYASEALEFEKAATLRDQIQAIKHTIERQSVVLPE 245

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-K 297
              MD   +    N   +   F   G+     TFF          ++L  FL QFY+   
Sbjct: 246 GGDMDVIGIAVVNNGLALGFLFVREGKLLDGRTFFWPGLELDDGPELLGSFLSQFYSPIS 305

Query: 298 PCPENILLSEEAEETSLLEISFFKQY-----------GYKVKITVPKQGEKRKIIEQALI 346
             P  I++    E T+  +      +              V+I VPK   +  +++ A+ 
Sbjct: 306 SIPPRIIVPWLPESTNNKDEISEDTFETLKYVLEDIRNSTVRIEVPKNIIESNLVDIAVT 365

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +   KL   +S         K F       RIE  D SHI G +    MVV  ++ 
Sbjct: 366 NAREAVQTKLGEPMS-----AKLAKVFHTDKPIFRIECVDVSHISGTNTRVGMVVFEDSQ 420

Query: 407 FVKNQYRKFNLHPN--DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
            +KN YR ++   +       DD A +    +R                  +  S P W 
Sbjct: 421 PLKNDYRIYSTTEDNSPFIKGDDYAALASWAKR------------------RIQSGPPWA 462

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK------GPKRSAGM---EKFFVKKG 515
           D+V++DGGKGQ++A Q V  + ++++   +  IAK         R AG    + F V + 
Sbjct: 463 DLVLIDGGKGQINAVQRVFNEHHLKDVFILAGIAKARNEEGRVDRRAGNIGDKIFVVGRM 522

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574
             L L    P L F+Q +RD AH F +  HRK RK  A    L  I GIG    +LL   
Sbjct: 523 NPLTLKEGSPELLFLQYVRDTAHNFVLGKHRKARKNTALLGELLRIPGIGQATAKLLWSH 582

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           F TV+ ++ ++ + L +I GI +  A  +     
Sbjct: 583 FKTVEAMTCATIKDLEAIPGIGEAKARMLAERLQ 616


>gi|317152945|ref|YP_004120993.1| excinuclease ABC subunit C [Desulfovibrio aespoeensis Aspo-2]
 gi|316943196|gb|ADU62247.1| excinuclease ABC, C subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 604

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 169/611 (27%), Positives = 278/611 (45%), Gaps = 34/611 (5%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTCT 65
           P+ PGVY M +  GR++YVGKA  L++R+ SY   +   T +   ++ Q+  +   +T T
Sbjct: 15  PDSPGVYLMKNARGRIIYVGKAKRLRRRLASYFQKSSGLTPKTLALVGQVCAVDVLLTGT 74

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +IK+ +PR+N++L+DDK +    +  K + P L   R        YFGPF
Sbjct: 75  EKEALLLEEGLIKKHRPRYNVVLKDDKQYVLFRLDRKAEFPRLSVTRKVVRDGSVYFGPF 134

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            S  A   T   L + F LR C+D VFR+R RPCL   + +C  PC   +    Y + V 
Sbjct: 135 TSGAAARTTWKLLGKVFPLRKCSDHVFRNRVRPCLYHHLHQCLAPCVLNVDRAVYKDMVR 194

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
             +  LSG +  L   + + M +A+   +YE A + RD++ A+        ++ +     
Sbjct: 195 RVEMLLSGKSGELLTTLEKRMAEASAAMEYEQAALLRDQIRAVRQTVEGQVAVCHDTRDR 254

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D   L  +++   +   F   G+      FF    +     +++  F+ QFY        
Sbjct: 255 DVLGLAASESGLGLGLLFIRQGRLLDEKQFFWPGLTLDEGPEVIQSFVMQFYGAARFIPP 314

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +++        L+     ++    V++ +P+  +++K++E A   A ++  ++ S     
Sbjct: 315 MIIVPYEMVEPLVAEVLAERRTGPVRLVLPRTTQEKKLLELARDVARQARQRRDSISAR- 373

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
                   +   LP  P+RIE  D SH+ G       VV       +   R +     + 
Sbjct: 374 ------LARALNLPAEPERIECVDASHLGGSDMRVGQVVFEAGRRDREASRLYAFPDLEG 427

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              D                      L    +++  S P WPD+V++DGG+GQL+A +  
Sbjct: 428 TGDDYA-------------------ALAAWARRRVESGPPWPDLVLIDGGRGQLAAVERA 468

Query: 483 LKKLNVENRITIISIAKGPKRSAG-ME--KFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           L +   E    +++IAKGP R AG +E   F   +   + L      L F+Q +RD AHR
Sbjct: 469 LSECVEETCWELVAIAKGPSRRAGELEDVVFRPGRKNPMPLKPGSAELLFLQMVRDTAHR 528

Query: 540 FAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           F +   R  RKK    S L  + GIGP   RLL   F ++  +  + P+ + ++ GI  K
Sbjct: 529 FVLGRQRIARKKTVLQSELTLLPGIGPKTARLLWDRFESLDAMLAADPQAIRALPGIGGK 588

Query: 599 IACKIYNHFHK 609
            A  I+    K
Sbjct: 589 KAELIHAALQK 599


>gi|307564834|ref|ZP_07627362.1| excinuclease ABC, C subunit [Prevotella amnii CRIS 21A-A]
 gi|307346556|gb|EFN91865.1| excinuclease ABC, C subunit [Prevotella amnii CRIS 21A-A]
          Length = 613

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 166/626 (26%), Positives = 304/626 (48%), Gaps = 50/626 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA NL++R+ SY H      +   ++S+I +I +++  
Sbjct: 19  SMPEKPGTYQYYDKDNIIIYVGKAKNLKRRVASYFHKEVDRFKTKLLVSKIFDISYSIVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALL+E  +IK+ +PR+N+LL+D K++P I +T+    P ++  R  +   G+YFGP
Sbjct: 79  SEEDALLIENQLIKQYQPRYNVLLKDGKTYPSICVTN-ELFPRIFHTRTINKKLGTYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++ + ++   ++ +++T+  RSC      + + + + + CL + +  C  PC  + S  +
Sbjct: 138 YSHISSMYAILDIIKKTYKPRSCRFPITKEGIQQGKYKSCLEYHMGNCGAPCINKQSYNE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +AK+ L G   +++  I + M + + +  +E A I + +  AL +    ++ + 
Sbjct: 198 YQENIKQAKEVLKGNTRSVQHIIRKQMEELSEQLRFEEAEICKQKYIALDNFATKSEIVS 257

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             +    ++   N      A I       G    + T+  K   + ++A++L+  + +  
Sbjct: 258 YTITDVDVFSIDNDETNKNAFINYIHVTNGAINQSFTYEYKRKLDESDAELLNEAIPEIR 317

Query: 295 TDKPCP-ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                  + I++  E +                    +P++G+KR ++E + +NA +   
Sbjct: 318 ERFKSKAKEIIVPFELDFK-----------IKDADFFIPQRGDKRHLLELSQMNAKQYKF 366

Query: 354 QKLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
            +L        E     ++ +   K  LP +P  IE +DNS+I G  AV   +V  +   
Sbjct: 367 DRLKQAEKLNPEQKQTRLMTELRDKLKLPKLPYTIECFDNSNISGTDAVAGCIVYKKMKP 426

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K  YRK+N+    V+  +D A M+ V+ RR+S++                     PD++
Sbjct: 427 SKKDYRKYNIKT--VEGPNDYASMQEVVRRRYSKIKAEG--------------TPLPDLI 470

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           I DGGKGQ+   + V++   +   I I  +AK  K     E  +    + + +     + 
Sbjct: 471 ITDGGKGQMEVVRTVIED-ELHLHIPIAGLAKNDKHRT-NELLYGFPAQTISIKPTSELF 528

Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             + +++DE HR+AI+ HR +R K   +S LDEI GIGP  K  LL+   T+  I  +  
Sbjct: 529 KVLTQIQDEVHRYAISFHRDKRSKHQLHSVLDEIPGIGPKTKEALLKELKTLSNIKTTDL 588

Query: 587 ETLASIEGISKKIACKIYNHFHKNTS 612
           +TL SI  I    A  I+N+FH  T 
Sbjct: 589 QTLTSI--IGSFKAEIIFNYFHNKTD 612


>gi|294782085|ref|ZP_06747411.1| excinuclease ABC subunit C [Fusobacterium sp. 1_1_41FAA]
 gi|294480726|gb|EFG28501.1| excinuclease ABC subunit C [Fusobacterium sp. 1_1_41FAA]
          Length = 589

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 191/613 (31%), Positives = 306/613 (49%), Gaps = 39/613 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M     +V+YVGKA NL+ R+ SY +  + + +   ++  I +I F +T 
Sbjct: 7   NIPESPGVYLMK-KNNKVIYVGKAKNLKNRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           TE++ALLLE N+IK+  P++NILL+D+K++P+I I+ K   P++   R +       G Y
Sbjct: 66  TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKTGEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L + F +R C   + +   RPCL + +K C+GPC  +   E Y 
Sbjct: 125 FGPYP--YGAWRLKAVLMKLFKIRDCNRDMKKKSQRPCLKYYMKSCTGPCVYKDIKEDYN 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + +   K+ L G +  L   ++  MN++  + D+E +II+R+++  L +I N     Y R
Sbjct: 183 KNIESLKQVLRGNSSKLISDLSLLMNKSAEEMDFEKSIIYREQIKELKNIANSQIIQYER 242

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      +   I       G+  G  +  L   ++ T+  +       +Y+   
Sbjct: 243 ELDEDIFVFKTILDKTFICVLNMRDGKILGKTSTSLDLKNKITDN-VFEAIFMSYYSKHI 301

Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P++++L  E E     ++E    +    K       +  ++ ++E A  N  R      
Sbjct: 302 LPKSLVLDAEYENELAIVVEALTLEVSKKKEFHFPKIKSRRKDLLEMAYKNLERDIESYF 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +  +KD      L   P++IE +D S+I G  AV  M V  E    K +YRKF 
Sbjct: 362 SKKDTIEKGIKDLHDILNLKRFPRKIECFDISNIQGKDAVASMSVSIEGRAAKKEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD +MMR V+ERR+S+L                    +PDV+++DGG GQ+
Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLAD----------------IDFPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           +AA  +LKKL   +   ++S+A         E +   + E  VL+     L   QR+RDE
Sbjct: 464 NAAAEILKKLGKLHLSELLSLA-----ERNEEIYKYGEPEPYVLSKDMEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF +T HRK R K    S LD I GIG +R++ LL  FG+V  I ++S E L  I  +
Sbjct: 519 AHRFGVTYHRKLRSKRIISSELDRIEGIGEVRRKKLLTKFGSVTAIKKASIEELKEI--V 576

Query: 596 SKKIACKIYNHFH 608
            +K+A +I NH  
Sbjct: 577 PEKVALEIKNHIK 589


>gi|298372483|ref|ZP_06982473.1| excinuclease ABC subunit C [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275387|gb|EFI16938.1| excinuclease ABC subunit C [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 600

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/621 (27%), Positives = 293/621 (47%), Gaps = 50/621 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PGVYQ  D  G ++Y+GKA NL+KR+ SY      + +   ++ QI +IR+ 
Sbjct: 8   KIDALPHLPGVYQFFDAKGTIIYIGKAKNLKKRVSSYFVKTPDSPKTAILVRQIVDIRYI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  TE +ALLLE+N+IKR  PR+N++L+   ++PY+ IT K   P ++K R +       
Sbjct: 68  VVKTENDALLLESNLIKRFLPRYNLMLKYGTTYPYLCIT-KEDFPRVFKTRKTLPD-CEL 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
           FGP++    +   +  ++  + +RSC      +S+ + R + CL + IK C G C G  S
Sbjct: 126 FGPYSIAGTLNALLELIKTIYPVRSCKLPLTEESIAKKRYKLCLEYHIKNCRGVCCGLQS 185

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
              Y   + + +    G +H +++ +  N+   + +  +E A   +++  A+   +    
Sbjct: 186 KADYNAMISDIRTIAKGHSHIVEKYLLDNIKILSEQLRFEEAQRLKEKYDAIREYRQKTV 245

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
                    D FS   ++    I       G    + T   K + E  + ++ S  + + 
Sbjct: 246 ITTQSDATLDVFSFDTDQTTVYINMLRVVNGSIIQSNTIEYKKNIEEVDGEVFSSGIAEL 305

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----- 348
                     ++               +     V+  VPK+  K+++++ +  N      
Sbjct: 306 REKYASEARQIVVPFVP----------EFTIDGVEYIVPKRDYKKELLDLSYRNVLQYKK 355

Query: 349 -HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
              +  QKL+T   +  ++ +  +   L ++P  IE++DNSH  G  AV   VV      
Sbjct: 356 DKYTQAQKLNTNQRNYALMNEIREMLHLDNMPHTIEMFDNSHTAGDEAVAACVVFRNLRP 415

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
           +K QYRK+ +  +     DD A M+ V+ RR+S++I     L              PD++
Sbjct: 416 LKEQYRKYIIKSD--GGGDDYASMKEVINRRYSRMISEGSKL--------------PDLI 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           + DGGKGQ+SA + VL+ L +   + +  +AK  K       F     + + L  +D + 
Sbjct: 460 LADGGKGQVSAVRSVLEALGIA--VPVAGLAKNDKHRTNELIF---DDKVIGLKPQDSVF 514

Query: 528 YFIQRLRDEAHRFAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
            F  +++DE HRFAIT HR KR KK   S LD+I  IG   K+ LLQ F +V+ I ++  
Sbjct: 515 KFFTKMQDEVHRFAITFHRDKRSKKQVASELDDIKNIGETTKKTLLQHFKSVERIKKADF 574

Query: 587 ETLASIEGISKKIACKIYNHF 607
           + L  I  I K  A  + +HF
Sbjct: 575 DELEKI--IGKNRAKILISHF 593


>gi|254303068|ref|ZP_04970426.1| excision endonuclease subunit UvrC [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323260|gb|EDK88510.1| excision endonuclease subunit UvrC [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 589

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 189/610 (30%), Positives = 308/610 (50%), Gaps = 39/610 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M     +V+YVGKA NL+ R+ SY +  +   +   ++  I +I F +T 
Sbjct: 7   DIPESPGVYLMK-KNDKVIYVGKAKNLKNRVSSYFNRVHENEKTNELVKNIEDIEFFLTN 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           TE++ALLLE N+IK+  P++NILL+D+K++P+I I+ K   P++   R +       G Y
Sbjct: 66  TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKSGEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +  N L + F +R C   + +   RPCL + +K C+GPC  +   E+Y 
Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKVSPRPCLKYYMKSCTGPCVYKDIKEEYN 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   K+ L G    L  ++   MN+A+   D+E +II+R+++  L  I N     Y R
Sbjct: 183 RDVENLKQVLRGNTSKLINELTTLMNKASQDMDFEKSIIYREQIKELKSIANSQIIQYER 242

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      +   I       G+  G  +  +   ++ T+  I       +Y+   
Sbjct: 243 ELDEDIFVFKTILDKTFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301

Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P++++L  E E     +++    ++   K       +  ++++++ A  N  R      
Sbjct: 302 LPKSLVLDAEYENELSVVVKALTNEESKKKEFHFPKIKSRRKELLDMAYKNLERDLETYF 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +  +KD      L   P++IE +D S+I G  AV  M V  E    K +YRKF 
Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAAKKEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD +MMR V+ERR+S+L   E                +PDV+++DGG GQ+
Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLPDIE----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  VL++L   +   ++S+AK  +     E +   +     L+     L   QR+RDE
Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K    S LD+I+GIG +R++ LL  FG++  I ++S + L  I  I
Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKIDGIGEVRRKKLLTKFGSISGIKKASIDELKEI--I 576

Query: 596 SKKIACKIYN 605
            +K+A +I N
Sbjct: 577 PEKVALEIKN 586


>gi|227524123|ref|ZP_03954172.1| excinuclease ABC subunit C [Lactobacillus hilgardii ATCC 8290]
 gi|227088754|gb|EEI24066.1| excinuclease ABC subunit C [Lactobacillus hilgardii ATCC 8290]
          Length = 589

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/609 (28%), Positives = 281/609 (46%), Gaps = 43/609 (7%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M DI G+++YVGKA NL+ R++SY   ++H  +   ++S+I +    +T T+ EA LLE 
Sbjct: 1   MKDINGKIIYVGKAKNLKNRVRSYF-KSSHEGKTARLVSEIADFETIITSTDKEAFLLEI 59

Query: 75  NMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
            +I++ +P FNI L+   S +PYI IT+  + P +            YFGP+ +V A E+
Sbjct: 60  TLIQKHRPYFNIKLKQGHSGYPYIKITN-ERDPQIKIVNTLLKDGAYYFGPYPNVYAAEE 118

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           T+N LQ+ + LR C         RPCL + + +C G C   +    Y   +   K FL+G
Sbjct: 119 TVNFLQKVYPLRRCNGFQ----NRPCLYYHMGQCLGACFKVVPEAVYDRQIKRIKSFLNG 174

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
              + K+ +A+ M  A+    YE A   RD +  +         I +     D F+ Y N
Sbjct: 175 NVGHAKQMLAKRMEDASANMAYERAAEIRDLIKYIEITVEKQKIISHDNTPRDIFNYYMN 234

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310
           K    IQ  F    +       F    ++     +          ++  P+ IL+     
Sbjct: 235 KGWLSIQVFFIRQSRLMKREKRFFPIITDPEEEMVSFISQFYKQKNQILPKEILVPSSLP 294

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMIL 366
              +  +         + +  PK+G+KR ++E A  NA              E      +
Sbjct: 295 YDVVSSV------VDDIPVRTPKRGQKRDLLEMAGKNAQLVLEEKFRLLELDESKTTGAM 348

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           K+ T    +P    ++E +D+SHI G   V  MVV  +    KN YRK+ L    V   D
Sbjct: 349 KELTDAMGIP-EGHKVEAFDHSHIQGADLVSAMVVFVDGQPNKNLYRKYKLKT--VDHAD 405

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-LKK 485
           + A  R V+ RR+++L+K                   PD++++DGG  Q++A + V + +
Sbjct: 406 EAASTREVIRRRYTRLLKEH--------------AQMPDLILMDGGTIQMNAVKDVLVNE 451

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L ++  I +  + K        +  F      L L+ +    Y +QR++DE HRFAIT H
Sbjct: 452 LGLD--IPVGGMVKNEHHQTA-DLLFGDSDTPLHLDPKSQGFYLLQRIQDEVHRFAITYH 508

Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           RK   K +  S LD I G+GP  +  LL+ FG++K IS +  + L ++ GIS+ +A  I 
Sbjct: 509 RKVHAKNSLGSRLDSIAGVGPKTRNKLLRKFGSLKKISAAPVDDLKAL-GISETVAQTIK 567

Query: 605 NHFHKNTSH 613
               K  + 
Sbjct: 568 FSLSKIDAE 576


>gi|262068097|ref|ZP_06027709.1| excinuclease ABC subunit C [Fusobacterium periodonticum ATCC 33693]
 gi|291378183|gb|EFE85701.1| excinuclease ABC subunit C [Fusobacterium periodonticum ATCC 33693]
          Length = 589

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 192/613 (31%), Positives = 308/613 (50%), Gaps = 39/613 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M     +V+YVGKA NL+ R+ SY +  + + +   ++  I +I F +T 
Sbjct: 7   NIPESPGVYLMK-KNNKVIYVGKAKNLKNRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           TE++ALLLE N+IK+  P++NILL+D+K++P+I I+ K   P++   R +       G Y
Sbjct: 66  TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKTGEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L + F +R C   + +   RPCL + +K C+GPC  +   E Y 
Sbjct: 125 FGPYP--YGAWRLKAVLMKLFKIRDCNRDMKKKSQRPCLKYYMKSCTGPCVYKDIKEDYN 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + +   K+ L G +  L   ++  MN++  + D+E +II+R+++  L +I N     Y R
Sbjct: 183 KDIESLKQVLKGNSSKLINDLSILMNKSAEEMDFEKSIIYREQIKELKNIANSQIIQYER 242

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      + A I       G+  G  +  L   ++ T+  I       +Y+   
Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKTSTSLDLKNKITDN-IFEAIFMSYYSKHI 301

Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P++++L  E E     +++    +    K       +  ++ +++ A  N  R      
Sbjct: 302 LPKSLVLDAEYENELAIVVKALSIEDSKKKEFHFPKIKSRRKDLLDMAYKNLERDIENYF 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +  +KD      L   P++IE +D S+I G  AV  M V  E    K +YRKF 
Sbjct: 362 SKKDTIEKGIKDLHDILDLKRFPRKIECFDISNIQGKDAVASMSVSIEGRAAKKEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD +MMR V+ERR+S+L                    +PDV+++DGG GQ+
Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLAD----------------IDFPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           +AA  +LKKL   +   ++S+A         E +   + E  VL+     L   QR+RDE
Sbjct: 464 NAAAEILKKLGKLHLSELLSLA-----ERNEEIYKYGESEPYVLSKDMEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF +T HRK R K    S LD+I GIG +R++ LL  FG+V  I R+S E L  I  +
Sbjct: 519 AHRFGVTYHRKLRSKRIISSELDKIEGIGEVRRKKLLTKFGSVTAIKRASIEELKEI--V 576

Query: 596 SKKIACKIYNHFH 608
            +K+A +I NH  
Sbjct: 577 PEKVALEIKNHIK 589


>gi|300361554|ref|ZP_07057731.1| excision endonuclease subunit UvrC [Lactobacillus gasseri JV-V03]
 gi|300354173|gb|EFJ70044.1| excision endonuclease subunit UvrC [Lactobacillus gasseri JV-V03]
          Length = 600

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 175/622 (28%), Positives = 287/622 (46%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPDKPGCYLMKDINGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              ++ E+ LLE  +IK+ +P +N+ L+    +PYI IT+  + P            G Y
Sbjct: 68  TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSIVHKDHGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+     H+ RPCL + + +C G C  E+    Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCSG----HQGRPCLYYHMGQCLGACFKEVPKSAYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + + K+FL+G    +K+ +   M QA++  ++E A   RD+L  +         I N 
Sbjct: 183 KQIRKIKRFLNGDISQVKQDLTEKMTQASMDLEFERAAEFRDQLKYIEQTVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +K+   IQ  F    +     T        +        F+ QFY  + 
Sbjct: 243 HTQRDIFNFYVDKSWISIQVFFLRQAKLLRRETRLFPLTDTNEPQDAFVSFIAQFYGQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P+ +L+    +  +L E+         V +  P++G+KR ++E A  NA        
Sbjct: 303 RVLPKEVLVPAGIDNEALAEVL-------GVTVRTPQRGQKRALLEMAHDNAKLKLDEKF 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEPDKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+S+L+K  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K          F    +GE    + LN +   
Sbjct: 461 GGQIQVDACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTQGEELKLIPLNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K A  S LDEI GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            E L    G++   A  +    
Sbjct: 580 IEELRDA-GLTLPQAQTVKLSL 600


>gi|116629526|ref|YP_814698.1| excinuclease ABC subunit C [Lactobacillus gasseri ATCC 33323]
 gi|238852676|ref|ZP_04643086.1| excinuclease ABC subunit C [Lactobacillus gasseri 202-4]
 gi|122273536|sp|Q043W2|UVRC_LACGA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|116095108|gb|ABJ60260.1| Excinuclease ABC subunit C [Lactobacillus gasseri ATCC 33323]
 gi|238834822|gb|EEQ27049.1| excinuclease ABC subunit C [Lactobacillus gasseri 202-4]
          Length = 600

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 175/622 (28%), Positives = 287/622 (46%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPDKPGCYLMKDINGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              ++ E+ LLE  +IK+ +P +N+ L+    +PYI IT+  + P            G Y
Sbjct: 68  TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSFVHKDHGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+     H+ RPCL + + +C G C  E+    Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCSG----HQGRPCLYYHMGQCLGACFKEVPKSAYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + + K+FL+G    +K+ +   M QA++  ++E A   RD+L  +         I N 
Sbjct: 183 KQIRKIKRFLNGDISQVKQDLTEKMTQASMNLEFERAAEFRDQLKYIEQTVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +K+   IQ  F    +     T        +        F+ QFY  + 
Sbjct: 243 HTQRDIFNFYVDKSWISIQVFFLRQAKLLRRETRLFPLTDTNEPQDAFVSFIAQFYGQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P+ +L+    +  +L E+         V +  P++G+KR ++E A  NA        
Sbjct: 303 RVLPKEVLVPAGIDNEALAEVL-------GVAVRTPQRGQKRALLEMAHDNAKLKLDEKF 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEPDKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+S+L+K  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K          F    +GE    + LN +   
Sbjct: 461 GGQIQVDACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTQGEELKLIPLNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K A  S LDEI GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            E L    G++   A  +    
Sbjct: 580 IEELRDA-GLTLPQAQTVKLSL 600


>gi|255530301|ref|YP_003090673.1| excinuclease ABC subunit C [Pedobacter heparinus DSM 2366]
 gi|255343285|gb|ACU02611.1| excinuclease ABC, C subunit [Pedobacter heparinus DSM 2366]
          Length = 598

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 187/620 (30%), Positives = 310/620 (50%), Gaps = 52/620 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
            +P  PG+YQ  D  G ++Y+GKA +L+ R+ SY + +N    +   ++S+I  I FT+ 
Sbjct: 12  NIPHKPGIYQYWDAEGTLIYIGKAKDLRNRVGSYFNKDNQMNGKTRVLVSRIRKITFTIV 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE++A LLE ++IK+ +PR+NILL+DDK++P+I+I  K   P +Y  R       +YFG
Sbjct: 72  DTEIDAWLLENSLIKKHQPRYNILLKDDKTYPWIII-KKEPFPRVYWTRKMIKDGSTYFG 130

Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           P+ASV  +   I+ ++ T+ LR+C       ++   + + CL +QI  C GPC    +  
Sbjct: 131 PYASVGMMHTIIDLIKETYPLRTCNLPLSKKNIDDGKFKVCLEYQIGNCKGPCQAYQTEP 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            Y   + E K  L+G   N+ + + R + ++  + ++E A  ++ +L  L   Q+ +   
Sbjct: 191 DYDSNIEEIKDILNGKIGNVIKDVKRVIKKSVDELNFELAHQYQRKLMVLEKYQSKSTVV 250

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                 +D  S+  ++  A +       G    T T  +K   + T+ ++L+  + +F T
Sbjct: 251 NSAITNVDVVSIASDERYAFVNYLKVMNGSIIQTQTIEIKKRLDETDEELLTIAIMEFRT 310

Query: 296 D-KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA------ 348
                 + I++  +   T                   PK GEK+K++E +  N       
Sbjct: 311 RFNSTSKEIIVPFDITLTDENLKFTL-----------PKLGEKKKLLELSQKNVLFFKKE 359

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
             +  +KL+ ++    IL    K   L   PK IE +DNS+  G   V  +VV  +    
Sbjct: 360 KLNQYEKLNPDLRTDRILSQMQKDLGLTKSPKHIECFDNSNFQGKYPVSAIVVFKDAKPS 419

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YR FN+    V+  +D A M   + RR+ ++++ E  L              P+++I
Sbjct: 420 KKDYRHFNVKT--VEGPNDFATMEEAVYRRYKRMLEEENTL--------------PELII 463

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQLS+A   LKKL +E R+T+I IAK  +     E FF      L L+ +   L 
Sbjct: 464 IDGGKGQLSSAMNSLKKLGIEKRVTVIGIAKRLE-----ELFFPGDPYPLYLDKKSETLK 518

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            IQ+LRDEAHRF IT HRK+R +    + L++I GIG      LL+ F +VK I  +  E
Sbjct: 519 VIQQLRDEAHRFGITFHRKKRDQGTLKTELEQIPGIGKTTADKLLRHFKSVKKIKEAKEE 578

Query: 588 TLASIEGISKKIACKIYNHF 607
            L  +  ++K     + ++F
Sbjct: 579 ELTMV--LNKTQVKTLLDYF 596


>gi|260888894|ref|ZP_05900157.1| excinuclease ABC subunit C [Leptotrichia hofstadii F0254]
 gi|260861341|gb|EEX75841.1| excinuclease ABC subunit C [Leptotrichia hofstadii F0254]
          Length = 594

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 184/616 (29%), Positives = 292/616 (47%), Gaps = 39/616 (6%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIR 59
           +  + +P  PGVY M +  G+++YVGKA NLQ R+KSY  + N+H  +   ++  I +I 
Sbjct: 9   IKYKDIPTHPGVYLMKNARGKIIYVGKAKNLQNRVKSYFMNVNSHNQKTLELVKNIRDIE 68

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--I 117
           F +  +EVEAL+LE N+IK+ KP++NILL+D+K++PYI  T K K P +   R +     
Sbjct: 69  FFICKSEVEALILENNLIKKNKPKYNILLKDEKTYPYIKFT-KEKFPKVEIVRSTKKLNE 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              YFGP+         + SL + F +R C  S+    T+PCL + +K C  PC  +   
Sbjct: 128 NAEYFGPYPMGIFF--AMKSLIKIFPVRDCNRSM-DKITKPCLKYYMKTCPAPCKYKDIE 184

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           ++Y   V   K FL G +  + E +   M + + + ++E AI  R++LA +  +      
Sbjct: 185 DEYSTNVKNFKNFLKGHSDKVIEMLESRMKKFSDEMEFERAISEREKLAVMKKMLETQII 244

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
            Y+     D F     +    +       G+        +  +       +    +  +Y
Sbjct: 245 EYSKEIDEDVFVFEEKRENVFLCVLNIREGKVINKNHTVISMERSQEEN-LFERLITSYY 303

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII--EQALINAHRSH 352
             +  P++I+  E    + LL   + K   ++       +   R++   E   +N     
Sbjct: 304 EKRNIPKHIICDERFMSSELLIKEWAKIEKHREIKFHFPKINSRRLQLLEMGYLNLREEV 363

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +        Q  L++  K+  L  +P RIE +D S+I G  AV  M V  +      +Y
Sbjct: 364 DKYYRKRRMVQEGLRNLKKELRLKSLPYRIECFDISNIQGKDAVAAMTVALDGETTPKEY 423

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           R F +   D    DD  MMR  L RR+S++  ++                 P+++++DGG
Sbjct: 424 RHFKITVKDTP--DDFLMMREALTRRYSKMENDK----------------MPNLILIDGG 465

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQL  A  VL+KL       +I IAK  +     E F   + E  +    D  L  +QR
Sbjct: 466 KGQLGVAVDVLEKLGKIEHTDVIGIAKREE-----EIFKSYESEPYLFEKTDETLKILQR 520

Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRF IT HRK R K    S LD+I GIGP RK+ L++ FG +K I  ++ E L  
Sbjct: 521 LRDEAHRFGITHHRKLRSKRNVKSALDDIAGIGPKRKKELIKKFGLIKNIRNATLEELME 580

Query: 592 IEGISKKIACKIYNHF 607
           +  + + IA  I  + 
Sbjct: 581 V--VPENIAISIKENL 594


>gi|282852093|ref|ZP_06261451.1| excinuclease ABC, C subunit [Lactobacillus gasseri 224-1]
 gi|282556853|gb|EFB62457.1| excinuclease ABC, C subunit [Lactobacillus gasseri 224-1]
          Length = 600

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 174/622 (27%), Positives = 286/622 (45%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPDKPGCYLMKDINGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              ++ E+ LLE  +IK+ +P +N+ L+    +PYI IT+  + P            G Y
Sbjct: 68  TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSFVHKDHGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+     H+ RPCL + + +C G C  E+    Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCSG----HQGRPCLYYHMGQCLGACFKEVPKSAYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + + K+FL+G    +K+ +   M QA++  ++E A   RD+L  +         I N 
Sbjct: 183 KQIRKIKRFLNGDISQVKQDLTEKMTQASMNLEFERAAEFRDQLKYIEQTVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +K+   IQ  F    +              +        F+ QFY  + 
Sbjct: 243 HTQRDIFNFYVDKSWISIQVFFLRQAKLLRRENRLFPLTDTNEPQDAFVSFIAQFYGQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P+ +L+    +  +L E+         V +  P++G+KR ++E A  NA        
Sbjct: 303 RVLPKEVLVPAGIDNEALAEVL-------GVAVRTPQRGQKRALLEMAHDNAKLKLDEKF 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEPDKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+S+L+K  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILID 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K          F    +GE    + LN +   
Sbjct: 461 GGQIQVDACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTQGEELKLIPLNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K A  S LDEI GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            E L    G++   A  +    
Sbjct: 580 IEELRDA-GLTLPQAQTVKLSL 600


>gi|296117956|ref|ZP_06836539.1| excinuclease ABC subunit C [Corynebacterium ammoniagenes DSM 20306]
 gi|295969187|gb|EFG82429.1| excinuclease ABC subunit C [Corynebacterium ammoniagenes DSM 20306]
          Length = 624

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 168/629 (26%), Positives = 287/629 (45%), Gaps = 77/629 (12%)

Query: 51  MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110
           M+    N+ +TV  +EVEAL LE   IK+  PRFN+  RDDK++P + ++   ++P  + 
Sbjct: 1   MVQTAANVEWTVVASEVEALALEYTWIKKFDPRFNVKYRDDKTYPMLAVSVGEQVPRAFF 60

Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRC 167
           +R        YFGP++   AV +T++ L R F +R+C+  V+       RPCLL  I +C
Sbjct: 61  YRGPRRKGVRYFGPYSHAWAVRETLDLLTRVFPMRTCSKGVYNRHEKLGRPCLLGYIGKC 120

Query: 168 SGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAA 227
           + PC G +S +++ E V+    F++G    +  ++   M +A+   ++E A   RD L A
Sbjct: 121 NAPCIGRVSEDEHRETVNRLVSFMNGNTGPVVRQLTAQMQEASEALEFERAARLRDDLDA 180

Query: 228 LSHIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ 284
           ++ I      ++      D  + + ++  A +Q      G+ RG   + ++   +    +
Sbjct: 181 INKIMEQQAVVFSDGTDADLIAFHTDELEAAVQIFHVRDGRVRGQRGWVVERIGDQATLE 240

Query: 285 -------------ILSYFLRQFYTD-------------------------------KPCP 300
                        ++  FL QFY D                               +  P
Sbjct: 241 KLEEGEEDPALPLLMQNFLIQFYGDAVEREKLEAEEDAALQRRGVDQESRATPRRVQVVP 300

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE- 359
             IL+    EE   +        G +V + VP++G+KR +++    NA  +  Q      
Sbjct: 301 REILVHTMPEEAEEVVKLLEDLRGAQVDLRVPQRGDKRSLMQTVEKNAKDALRQHKLKRV 360

Query: 360 ---ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
               +    L+D  +   +   P RIE  D SHI G   V  +VV  +    K+ YR++ 
Sbjct: 361 GDLTARSAALQDIQEALGMETAPLRIECTDISHIQGTDVVASLVVFEDGLPRKSDYRRYR 420

Query: 417 LHPNDVKTQ-DDCAMMRMVLERRFSQLIKN---------------EENLNFHPKKQEYSF 460
           +       + DD   +  +  RRF +  ++               +EN+          F
Sbjct: 421 IKEAAGDGRSDDVGSIAEITRRRFKRHHEDKLANPDEEAEASNFADENVIEEATDAARKF 480

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVL 520
              P + I+DGG  Q++AAQ V  +L + + +T++ +AK  +     E +     E ++L
Sbjct: 481 AYPPQLFIVDGGAPQVAAAQKVFDELGIVD-VTLVGLAKRLE-----EIWVPGDDEPVIL 534

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVK 579
                 LY +Q++RDEAHRFAI  HR++R K   S  LD I G+GP R+  L++ FG+VK
Sbjct: 535 PRNSQALYLLQQIRDEAHRFAINYHRQQRSKRMRSSVLDSIPGLGPTRRMDLVKHFGSVK 594

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFH 608
            +  +S E +A ++GI  K+A  I+ H  
Sbjct: 595 KLKEASEEQIAEVKGIGPKMAATIFEHLR 623


>gi|315038177|ref|YP_004031745.1| excinuclease ABC subunit C [Lactobacillus amylovorus GRL 1112]
 gi|325956629|ref|YP_004292041.1| excinuclease ABC subunit C [Lactobacillus acidophilus 30SC]
 gi|312276310|gb|ADQ58950.1| excinuclease ABC subunit C [Lactobacillus amylovorus GRL 1112]
 gi|325333194|gb|ADZ07102.1| excinuclease ABC subunit C [Lactobacillus acidophilus 30SC]
 gi|327183454|gb|AEA31901.1| excinuclease ABC subunit C [Lactobacillus amylovorus GRL 1118]
          Length = 600

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 174/622 (27%), Positives = 287/622 (46%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              T+ EA LLE  +IK+ +P +N+ L+    +PYI IT +H  P            G Y
Sbjct: 68  TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVHKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C         RPCL + + +C G C  ++  ++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVYPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E + + K FL+G    +K+ +   M +A+ + ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKSFLNGDIAEVKQDLTAKMEKASEQLEFERAAEIRDQLKYIEETVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             + D F+ Y +K+   IQ  F    +     T        +      + F+ QFY  + 
Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDTTDPEDAFTSFIVQFYGQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ +L+    +  +L E+        KV +  P++G+K+ +++ A  NA      K 
Sbjct: 303 RVLPKEVLVPTGLDNDTLAEVL-------KVPVRTPQRGQKKALLDMAKDNAKLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTSY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+ +L++  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLRENKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A + VL+   +   I +  + K  K       F     G     + LN +   
Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+R  K A  S LD I GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRNFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            + L +  G++   A  I    
Sbjct: 580 VDELRAA-GLTLTQAQTIKLTL 600


>gi|260494651|ref|ZP_05814781.1| excinuclease ABC, C subunit [Fusobacterium sp. 3_1_33]
 gi|260197813|gb|EEW95330.1| excinuclease ABC, C subunit [Fusobacterium sp. 3_1_33]
          Length = 589

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 188/613 (30%), Positives = 310/613 (50%), Gaps = 39/613 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE  GVY M     +V+YVGKA NL+KR+ SY +  + + +   ++  I +I F +T 
Sbjct: 7   DIPESSGVYLMK-KNNKVIYVGKAKNLKKRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           TE +ALLLE N+IK+  P++NILL+D+K++P+I I+ K   P +   R +       G Y
Sbjct: 66  TETDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPNIKIVRTTKALDIKSGEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +  N L + F +R C   + +   RPCL + +K C+GPC  +   E+Y 
Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKLSPRPCLKYYMKSCTGPCVYKDIKEEYN 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V   K+ L G    L  ++   MNQA+   D+E +II+R+++  L  I++     Y R
Sbjct: 183 KNVENLKQVLRGNTSKLINELTILMNQASQDMDFEKSIIYREQIKELKSIESSQIIQYER 242

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      + A I       G+  G  +  +   ++ T+  I       +Y+   
Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301

Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P++++L  E E     +++    ++   K       +  ++++++ A  N  R      
Sbjct: 302 LPKSLVLDAEYENELSVVVKALTNEESKKKEFHFPKIKSRRKELLDMAYKNLERDLESYF 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +  +KD      L   P++IE +D S+I G  AV  M V  E    + +YRKF 
Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD +MMR V+ERR+S+L   +                +PDV+++DGG GQ+
Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  VL++L   +   ++S+AK  +     E +   +     L+     L   QR+RDE
Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K    S LD+I+GIG +R++ LL  FG++  I ++S + L  I  I
Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKIDGIGEVRRKKLLTKFGSISGIKKASIDELKEI--I 576

Query: 596 SKKIACKIYNHFH 608
            +K+A +I N   
Sbjct: 577 PEKVALEIKNKIR 589


>gi|237742020|ref|ZP_04572501.1| excinuclease ABC subunit C [Fusobacterium sp. 4_1_13]
 gi|229429668|gb|EEO39880.1| excinuclease ABC subunit C [Fusobacterium sp. 4_1_13]
          Length = 589

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 186/613 (30%), Positives = 310/613 (50%), Gaps = 39/613 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M     +V+YVGKA NL+ R+ SY +  +   +   ++  I +I F +T 
Sbjct: 7   DIPESPGVYLMK-KNDKVIYVGKAKNLKNRVSSYFNRVHENEKTNELVKNIEDIEFFLTN 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           TE++ALLLE N+IK+  P++NILL+D+K++P+I I+ K   P++   R +       G Y
Sbjct: 66  TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKSGEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +  N L + F +R C   + +   RPCL + +K C+GPC  +   E+Y 
Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKVSPRPCLKYYMKSCTGPCVYKDIKEEYN 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V   K+ L G    L  ++   M++A+   D+E +II+R+++  L  I +     Y R
Sbjct: 183 KDVENLKQVLRGNTSKLINELTTLMDKASQDMDFEKSIIYREQIKELKAIASSQIIQYER 242

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      + A I       G+  G  +  +   ++ T+  I       +Y+   
Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301

Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P++++L  E E     +++    ++   K       +  ++++++ A  N  R      
Sbjct: 302 LPKSLVLDAEYENELAVVVKALTNEEGKKKEFHFPKIKSRRKELLDMAYKNLERDLETYF 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +  +KD      L   P++IE +D S+I G  AV  M V  E    + +YRKF 
Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD +MMR V+ERR+S+L   +                +PDV+++DGG GQ+
Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  VL++L   +   ++S+AK  +     E +   +     L+     L   QR+RDE
Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K    S LD+INGIG +R++ LL  FG++  I +++ E L  I  +
Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKINGIGKVRRKKLLTKFGSISGIKKANIEELKEI--V 576

Query: 596 SKKIACKIYNHFH 608
            +K+A +I N   
Sbjct: 577 PEKVALEIKNKIR 589


>gi|323698319|ref|ZP_08110231.1| excinuclease ABC, C subunit [Desulfovibrio sp. ND132]
 gi|323458251|gb|EGB14116.1| excinuclease ABC, C subunit [Desulfovibrio desulfuricans ND132]
          Length = 604

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 176/615 (28%), Positives = 275/615 (44%), Gaps = 36/615 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61
           +++ P+ PGVY M D  GR+LYVGKA  L++R+ SY       T +   ++++I +I   
Sbjct: 9   ADRFPDTPGVYLMKDGRGRILYVGKAKKLRRRLASYFRKAEALTPKTRALVARIRHIDTL 68

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T TE EALLLE+ +IK+ +PR+N++L+DDK +    +  + + P L   R        Y
Sbjct: 69  LTATEKEALLLESGLIKKHRPRYNVVLKDDKQYVLFRLDRQSEFPRLSMTRKVVRDGSVY 128

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S  A       L + F LR C D+ FR+R RPCL   I +C  PC  ++  E Y 
Sbjct: 129 FGPFTSASAARTVWKLLGKVFPLRKCKDTAFRNRVRPCLYHDIGQCWAPCVKDVDREAYA 188

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E VH  +  LSG +  L + + R M  A+    YE A  +RD++ A+        ++ + 
Sbjct: 189 EMVHRVEMLLSGRSLELVDDLTRKMKAASKDMAYEQAAAYRDQIRAVRKTVEGQAAVIHD 248

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DK 297
               D   L        +   F   G+      FF    +     +++  FL QFY   +
Sbjct: 249 NRDRDVIGLAETGQGLGLGLLFVRQGRLLDQKQFFWPGLTLDEGPEVVESFLGQFYGPGR 308

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  +++  E EE+ L E+   +       +      EK+ +          +      
Sbjct: 309 FIPSTVVVPMELEESPLPEVLTERGGASVRIVAPRNTQEKQLLG--------IARNVAAR 360

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              + + I     +   LP  P RIE  D SH+ G       VV  +     +  R +  
Sbjct: 361 AVEAAETISSRLQRVLRLPEEPVRIECVDASHLGGTDMRVGQVVFEDGRRNPDASRLYAF 420

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
              +    D                      L    +++  S P WPD+V++DGG+GQ+S
Sbjct: 421 PELEGAGDDYA-------------------ALAAWARRRMESGPPWPDLVLIDGGRGQIS 461

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGME---KFFVKKGEALVLNMRDPILYFIQRLR 534
           A +  L +   E    + SIAKG  R AG      F   +   + L    P L F+Q++R
Sbjct: 462 AVEKGLAECTEECGWELASIAKGESRRAGELGDVIFRPGRVNPMPLKPGSPELLFLQKIR 521

Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D AHRF +   R+ RKKA   S L  + GIGP   R+L   F +++ +  + P T+  + 
Sbjct: 522 DAAHRFVLGRQRRARKKAVLSSELTSLPGIGPRTARILWDRFESLEAMLEADPGTIGGLS 581

Query: 594 GISKKIACKIYNHFH 608
           GI  + A KI+    
Sbjct: 582 GIGPRRAEKIHAALQ 596


>gi|329667469|gb|AEB93417.1| excinuclease ABC subunit C [Lactobacillus johnsonii DPC 6026]
          Length = 600

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 174/622 (27%), Positives = 286/622 (45%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M D+ G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPDKPGCYLMKDVNGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              ++ E+ LLE  +IK+ +P +N+ L+    +PYI IT+  + P            G Y
Sbjct: 68  TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSIVHKDHGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C      H+ RPCL + + +C G C  E+    Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCTG----HQGRPCLYYHMGQCLGACFKEVPKSTYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             + + K+FL+G    +K+ +   M QA++  ++E A   RD+L  +         I N 
Sbjct: 183 AQIRKIKRFLNGDIAQVKQDLTEKMTQASMDLEFERAAEIRDQLKYIEQTVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +K+   IQ  F    +     T        +        F+ QFY  + 
Sbjct: 243 HTQRDIFNFYVDKSWISIQIFFLRQAKLLRRETRLFPLTDTNDPQDAFVSFIAQFYGQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P+ +L+    +  SL E+        KV +  P++G+K+ ++E A  NA        
Sbjct: 303 RVLPKEVLVPAGIDNESLSEVL-------KVPVRTPQRGQKKALLEMAHDNAKLKLDEKF 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEADKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+S+L+K  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K          F    KGE    + L+ +   
Sbjct: 461 GGQIQVEACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTKGEELKLIPLDPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K A  S LDEI GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            + L    G++   A  +    
Sbjct: 580 VDELREA-GLTLPQAQTVKLSL 600


>gi|300727533|ref|ZP_07060924.1| excinuclease ABC, C subunit [Prevotella bryantii B14]
 gi|299775236|gb|EFI71837.1| excinuclease ABC, C subunit [Prevotella bryantii B14]
          Length = 609

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 166/622 (26%), Positives = 298/622 (47%), Gaps = 48/622 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D  G ++YVGKA  L+ R+ +Y H      +   ++S+I+NI +TV  
Sbjct: 19  NMPEKPGSYQFYDSEGTIIYVGKAKKLKSRVSTYFHKEVDRFKTKVLVSKIHNISYTVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE ++IK+  P++N+LL+D K++P I +T+    P ++K R  +   G+Y+GP
Sbjct: 79  TEEDALLLENSLIKKYNPKYNVLLKDGKTYPSICVTN-EYFPRIFKTRTINKKFGTYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           +  + ++   ++ +++ +  R+C      + V + + +PCL + I  C  PC  + S E 
Sbjct: 138 YPHITSMYAVLDIIKKVYKPRTCRFPITREGVLQGKYKPCLEYHIHNCGAPCINKQSYED 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A++ L G    ++E +   M +      +E A  ++ +   L+     ++ + 
Sbjct: 198 YQENIRQAREILKGNTRKVEEFLYHLMQKNAELLKFEVAEKYKKKYLLLNDFVAKSEVVS 257

Query: 240 NRMDCFSLYHNKNL-----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           + +D   ++   +      A I       G    + TF  K   + T+ ++L   +    
Sbjct: 258 HTIDDVDVFTITDDDNHKNAYINYIHVKNGTINQSFTFEYKRKLDETDEELLITAIPDIR 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     E  +             +  VP++G+K  ++E + +N  +    
Sbjct: 318 QRFHSQAKEIIVPFEMEWKI----------KNAEFFVPQRGDKHHLLELSEMNGKQYKFD 367

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     ++    K   L  +P  IE +DNS+I G  AV   +V       
Sbjct: 368 RLKQAEKLNPEQKQTRLMTQLKKALKLDKLPYHIECFDNSNISGSDAVAGCIVYKGMKPS 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           +  YRK+N+    V   DD A M+ V+ RR++++++ +                 PD++I
Sbjct: 428 RKDYRKYNIKT--VVGPDDYASMQEVVRRRYTRMVEEK--------------TPLPDLII 471

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V+ +  +   I I  +AK  +     E  +    + + +     +  
Sbjct: 472 TDGGKGQMDVVRQVI-EGELHLNIPIAGLAKNDRHRT-NELLYGWPPQVIGIKTDSELFR 529

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HR+AIT HR +R K A +S LD+I G GP  K L+L+   TVK I  +  +
Sbjct: 530 VLTQIQDEVHRYAITFHRDKRSKHALHSELDDIKGFGPKSKELILKKLKTVKSIKEADIQ 589

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            L SI G SK  A  +Y+HFH+
Sbjct: 590 KLTSILGPSK--AEILYHHFHE 609


>gi|227512147|ref|ZP_03942196.1| excinuclease ABC subunit C [Lactobacillus buchneri ATCC 11577]
 gi|227084541|gb|EEI19853.1| excinuclease ABC subunit C [Lactobacillus buchneri ATCC 11577]
          Length = 589

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 172/609 (28%), Positives = 278/609 (45%), Gaps = 43/609 (7%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M DI G+++YVGKA NL+ R++SY   ++H  +   ++S+I +    +T T+ EA LLE 
Sbjct: 1   MKDINGKIIYVGKAKNLKNRVRSYF-KSSHEGKTARLVSEIADFETIITSTDKEAFLLEI 59

Query: 75  NMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
            +I++ +P FNI L+   S +PYI IT+  + P +            YFGP+ +V A E+
Sbjct: 60  TLIQKHRPYFNIKLKQGHSGYPYIKITN-ERDPQIKIVNTLLKDGAYYFGPYPNVYAAEE 118

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           T+N LQ+ + LR C         RPCL + + +C G C   +    Y   +   K FL+G
Sbjct: 119 TVNFLQKVYPLRRCNGFQ----NRPCLYYHMGQCLGACFKVVPEAVYDRQIKRIKSFLNG 174

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
              + K+ +A+ M  A+    YE A   RD +  +         I +     D F+ Y N
Sbjct: 175 NVGHAKQMLAKRMEDASANMAYERAAEIRDLIKYIEITVEKQKIISHDNTPRDIFNYYMN 234

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310
           K    IQ  F    +            ++     +          ++  P+ IL+     
Sbjct: 235 KGWLSIQVFFIRQSRLMKREKRLFPIITDPEEEMVSFISQFYKQKNQILPKEILVPSSLP 294

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMIL 366
                           + +  PK+G+KR ++E A  NA              E      +
Sbjct: 295 SD------VVSSVVDDIPVRTPKRGQKRDLLEMAGKNAQLVLEEKFRLLELDESKTTGAM 348

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           K+ T    +P    ++E +D+SHI G   V  MVV  +    KN YRK+ L    V   D
Sbjct: 349 KELTDAMGIP-EGHKVEAFDHSHIQGADLVSAMVVFVDGQPNKNLYRKYKLKT--VDHAD 405

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-LKK 485
           + A  R V+ RR+++L+K                   PD++++DGG  Q++A + V + +
Sbjct: 406 EAASTREVIRRRYTRLLKEH--------------AQMPDLILMDGGTIQMNAVKDVLVNE 451

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L ++  I +  + K        +  F      L L+ +    Y +QR++DE HRFAIT H
Sbjct: 452 LGLD--IPVGGMVKNEHHQTA-DLLFGDSDTPLHLDPKSQGFYLLQRIQDEVHRFAITYH 508

Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           RK   K +  S LD I G+GP  +  LL+ FG++K IS +  + L ++ GIS+ +A  I 
Sbjct: 509 RKVHAKNSLGSRLDSIAGVGPKTRNKLLRKFGSLKKISAAPVDDLKAL-GISETVAQTIK 567

Query: 605 NHFHKNTSH 613
               K  + 
Sbjct: 568 FSLSKIDAE 576


>gi|227889848|ref|ZP_04007653.1| excinuclease ABC subunit C [Lactobacillus johnsonii ATCC 33200]
 gi|227849712|gb|EEJ59798.1| excinuclease ABC subunit C [Lactobacillus johnsonii ATCC 33200]
          Length = 600

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/622 (28%), Positives = 286/622 (45%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPDKPGCYLMKDINGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              ++ E+ LLE  +IK+ +P +N+ L+    +PYI IT+  + P            G Y
Sbjct: 68  TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSIVHKDHGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C      H+ RPCL + + +C G C  E+    Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCTG----HQGRPCLYYHMGQCLGACFKEVPKSTYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             + + K+FL+G    +K+ +   M QA++  ++E A   RD+L  +         I N 
Sbjct: 183 AQIRKIKRFLNGDITQVKQDLTEKMTQASMDLEFERAAEIRDQLKYIEQTVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +K+   IQ  F    +     T        +        F+ QFY  + 
Sbjct: 243 HTQRDIFNFYVDKSWISIQIFFLRQAKLLRRETRLFPLTDTNDPQDAFVSFIAQFYGQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P+ +L+    +  SL E+        KV +  P++G+K+ ++E A  NA        
Sbjct: 303 RVLPKEVLVPAGIDNESLSEVL-------KVPVRTPQRGQKKALLEMAHDNAKLKLDEKF 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEADKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+S+L+K  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K          F    KGE    + L+ +   
Sbjct: 461 GGQIQVEACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTKGEELKLIPLDPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K A  S LDEI GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            + L    G++   A  +    
Sbjct: 580 VDELREA-GLTLPQAQTVKLSL 600


>gi|62185404|ref|YP_220189.1| excinuclease ABC subunit C [Chlamydophila abortus S26/3]
 gi|81312446|sp|Q5L553|UVRC_CHLAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|62148471|emb|CAH64241.1| putative nuclease [Chlamydophila abortus S26/3]
          Length = 604

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 176/607 (28%), Positives = 293/607 (48%), Gaps = 38/607 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            + +P  PGVY M D +G VLY+GKA NL+ RI +Y   +  +  RI  ++ +  +I   
Sbjct: 8   PKLIPASPGVYLMKDSSGEVLYIGKAKNLRNRISTYFRKDGDSRERIPFLMKKTTDIETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118
           +   E EA LLE N+IK+  P++N+LL+DDK+F  + I+  H  P +   R     S+ +
Sbjct: 68  LVSNETEAFLLENNLIKKYHPKYNVLLKDDKTFFCLAISLTHLWPKIDVVRTKAVTSSKK 127

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
              FGP+ S +A    +  + + F LR+C++  F  R RPC+L+++KRC  PC    S E
Sbjct: 128 QIIFGPYVSAEACRTLLEVISQWFPLRTCSNREFASRKRPCILYEMKRCLAPCVNLCSHE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y + + +A  FL G    + + + +++ +A+ ++ +E A ++   L  +          
Sbjct: 188 EYEQTLDKAVLFLKGQISEIVQDLEKSIEKASKEQKFEQAGMYYRTLKLIQQAMEKQHVE 247

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +  +D   LY       I       G+  G   F    +++     + S+ L+ +  
Sbjct: 248 KFHFQNIDAIGLYRKYQKTVITVLTIRSGKLLGARHFPFSENAQEDADVLSSFILQYYTN 307

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ IL         L             ++  PK G  R+++  A  NA       
Sbjct: 308 QPQTPKEILTPIPLNIPDLPS---LLNKDTPPQLRSPKTGYGRELLNLAKNNAQVHAETT 364

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           +    S  +  ++  K    P  P RIE YDN+H+ G  AVG  +V   +      YR F
Sbjct: 365 I---QSSALPYEELKKILKSPDYPYRIECYDNAHLQGSHAVGVYIVYENDALSPKDYRTF 421

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           ++  +     +D A    VL RRF  L                   S PD++++DGG+ Q
Sbjct: 422 SISSS---AYNDLAAFHEVLSRRFISLT-----------------SSIPDMILIDGGRTQ 461

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAG---MEKFFVKK-GEALVLNMRDPILYFIQ 531
            + A+  LK+LN+   I ++SIAK     +G    EK F     + ++L     +L F Q
Sbjct: 462 YAQAKKTLKELNLTG-IQVVSIAKEAGNHSGSLKNEKLFCDTFPQGVLLPPTSKLLQFFQ 520

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +LRDEAHRFA++ HRK+R K    P ++I GIG ++++ LLQ F + + + ++S   L +
Sbjct: 521 KLRDEAHRFALSRHRKKRHKDFLLPKEKIPGIGEIKRKRLLQKFKSWEQVMKASQGELEA 580

Query: 592 IEGISKK 598
           I G++KK
Sbjct: 581 IPGLTKK 587


>gi|268319616|ref|YP_003293272.1| UvrABC system protein C [Lactobacillus johnsonii FI9785]
 gi|262397991|emb|CAX67005.1| UvrABC system protein C [Lactobacillus johnsonii FI9785]
          Length = 600

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/622 (28%), Positives = 286/622 (45%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPDKPGCYLMKDINGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              ++ E+ LLE  +IK+ +P +N+ L+    +PYI IT+  + P            G Y
Sbjct: 68  TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSIVHKDHGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C      H+ RPCL + + +C G C  E+    Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCTG----HQGRPCLYYHMGQCLGACFKEVPKSTYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             + + K+FL+G    +K+ +   M QA++  ++E A   RD+L  +         I N 
Sbjct: 183 AQIRKIKRFLNGDIAQVKQDLTEKMTQASMDLEFERAAEIRDQLKYIEQTVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +K+   IQ  F    +     T        +        F+ QFY  + 
Sbjct: 243 HTQRDIFNFYVDKSWISIQIFFLRQAKLLRRETRLFPLTDTNDPQDAFVSFIAQFYGQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P+ +L+    +  SL E+        KV +  P++G+K+ ++E A  NA        
Sbjct: 303 RVLPKEVLVPAGIDNESLSEVL-------KVPVRTPQRGQKKALLEMAHDNAKLKLDEKF 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEADKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+S+L+K  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K          F    KGE    + L+ +   
Sbjct: 461 GGQIQVEACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTKGEELKLIPLDPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K A  S LDEI GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            + L    G++   A  +    
Sbjct: 580 VDELREA-GLTLPQAQTVKLSL 600


>gi|329296607|ref|ZP_08253943.1| excinuclease ABC subunit C [Plautia stali symbiont]
          Length = 551

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 193/554 (34%), Positives = 302/554 (54%), Gaps = 30/554 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D  G V+YVGKA +L+KR+ SY  +   + +   ++S I+NI  TVT 
Sbjct: 13  TVTSQPGVYRMYDATGTVIYVGKAKDLKKRLSSYFRTQVGSRKTEVLVSNIHNIDVTVTH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N IK  +PR+N+LLRDDKS+PYI ++     P L  HR +   +G YFGP
Sbjct: 73  TETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLS-GDPHPRLAMHRGAKHAKGEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183
           F +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + 
Sbjct: 132 FPNGYAVRETLALLQKVFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQ 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--NR 241
               + FL+G +  +  ++ + M QA++   +E A   RD++ A+  I          + 
Sbjct: 192 TDYVRLFLAGKDDQVINQLVQRMEQASVGLRFEEAARLRDQIQAVRRITEKQFVSNQGDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297
           +D   + ++  +AC+   F   G+  G+ ++F K  +++   +++  F+ QFY      +
Sbjct: 252 LDVMGVAYDAGMACLHVLFIRQGKVLGSRSYFPKVPADTELTEVMPTFVGQFYLQGSEAR 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P +ILL     E  LL  S  +  G KV I    +G++ + ++ A  NA  + T +L+
Sbjct: 312 TLPADILLDFNLPERELLAASLSELVGRKVSIQSKPRGDRARYLKLARTNAATALTTRLA 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              + Q  L        L     R+E +D SH MG   +   VV   +G ++  YR++N+
Sbjct: 372 QHSTIQQRLAALAAFLKLE-QINRMECFDISHTMGEQTIASCVVFNRDGPLRADYRRYNI 430

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M  VL RR+ + ++ E+                PDV+++DGGKGQL+
Sbjct: 431 EG--ITPGDDYAAMNQVLRRRYGKALEPEK---------------IPDVILIDGGKGQLA 473

Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGEALVLNMRDPILYFIQRL 533
            AQ V  +L+V   +NR  ++ +AKG  R AG+E   F  +GE + L    P L+ IQ +
Sbjct: 474 QAQQVFAELDVSWDKNRPILLGVAKGSDRKAGLETLLFAAEGEGVSLPPDSPALHVIQHI 533

Query: 534 RDEAHRFAITTHRK 547
           RD+AH  AI+ HRK
Sbjct: 534 RDDAHNHAISGHRK 547


>gi|212550898|ref|YP_002309215.1| excinuclease ABC subunit C [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549136|dbj|BAG83804.1| excinuclease ABC subunit C [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 602

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 180/619 (29%), Positives = 288/619 (46%), Gaps = 51/619 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTC 64
           +PEC GVY   D  G ++Y+GKA NL+KR+ SY     H + +   ++ ++ NI + V  
Sbjct: 16  LPECSGVYMYSDENGIIIYIGKAKNLKKRVSSYFKKTTHDNLKTKILVQKVRNIDYLVVE 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +  +ALLLE N+IK+ +P++NILL+DDK++P+I I      P +   R        Y+GP
Sbjct: 76  SGEDALLLENNLIKKYQPKYNILLKDDKTYPWIAI-KNESFPRIQLSRRKVKNNSRYYGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           + SV  V+  +  +   + +R+C       ++ R +   CL + IK+C GPC G  + ++
Sbjct: 135 YTSVSNVKCLLQLICSLYPIRTCKYVLSQVNIKRKKFHVCLQYHIKKCLGPCIGMQTEKE 194

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y E +  ++K L G    +   + + M     +  +E A I R +   L    + +    
Sbjct: 195 YDENIRLSEKILKGKYREVSRLLYQKMINLAAEMQFEKAEIVRKQYVMLKDYSSKSIVVS 254

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
              N +D +S   N   A I       G      T   K   + +   IL+  + +    
Sbjct: 255 QSLNNVDVYSFDENAKSAYINYLHIIDGAIVNGYTIEYKKKLDESKETILAMGITELRLR 314

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
                  ++     E  +            +  T+PK+GEK+K++  +  N  +    +L
Sbjct: 315 FKSKAKEIIVPFYPEIEID----------NLIFTIPKRGEKKKLLCLSEKNVKQYKLDQL 364

Query: 357 ST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           +       E     ILK    +  L  +P  IE +DNS+I G   V   VV  +    K 
Sbjct: 365 NKADKLNSEQRSIRILKILQNELHLKKLPLHIECFDNSNIQGVYPVSSCVVFKKANPSKK 424

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR FN+    V   +D   M   + RR+++LI+  + L              PD++++D
Sbjct: 425 DYRHFNIKT--VNGPNDFRSMYETVLRRYNRLIEENQPL--------------PDLIVID 468

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGKGQL A+   LK++ +  +I II+IAK  +     E +F      L L+     L  I
Sbjct: 469 GGKGQLHASVDALKEIGLYEQIPIIAIAKRLE-----EIYFPNDPLPLYLDKNSEGLKLI 523

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR-SSPET 588
           Q LRDEAHRF I  HR +R +    S LD I GIG + K  LL+ + + K I    S E 
Sbjct: 524 QYLRDEAHRFGINFHRNQRSRNQLISKLDSIKGIGVVTKEKLLRKYKSTKQIKEDVSQEE 583

Query: 589 LASIEGISKKIACKIYNHF 607
           + S+  I KK A ++ NH 
Sbjct: 584 IISL--IGKKKAERLLNHL 600


>gi|227893470|ref|ZP_04011275.1| excision endonuclease subunit UvrC [Lactobacillus ultunensis DSM
           16047]
 gi|227864695|gb|EEJ72116.1| excision endonuclease subunit UvrC [Lactobacillus ultunensis DSM
           16047]
          Length = 600

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/622 (27%), Positives = 287/622 (46%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              T+ EA LLE  +IK+ +P +N+ L+    +PYI IT +H  P            G Y
Sbjct: 68  TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVHKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ F LR C         RPCL + + +C G C  ++  ++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E + + K FL+G    +K+ + + M  A+   ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKGFLNGDIGWVKQDLTQKMETASQNLEFERAAEIRDQLKYIEETVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             + D F+ Y +K+   IQ  F    +     T        +      + F+ QFY  + 
Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDTTDPEDTFTSFIVQFYGQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ +L+ +  +  +L E+        KV +  P++G+K+ +++ A  NA      K 
Sbjct: 303 RVLPKEVLIPDGFDNATLAEVL-------KVPVRTPQRGQKKSLLDMAKDNAKLKIEDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTSY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+ +L++  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A + VL+   +   I +  + K  K       F     G     + LN +   
Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+R  K A  S LD I GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRNFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            + L +  G++   A  +    
Sbjct: 580 IDELRAA-GLTLPQAQTVKLTL 600


>gi|42518995|ref|NP_964925.1| excinuclease ABC subunit C [Lactobacillus johnsonii NCC 533]
 gi|81667898|sp|Q74JN8|UVRC_LACJO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|41583282|gb|AAS08891.1| excinuclease ABC subunit C [Lactobacillus johnsonii NCC 533]
          Length = 600

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/622 (27%), Positives = 286/622 (45%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M D+ G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPDKPGCYLMKDVNGNVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDFDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              ++ E+ LLE  +IK+ +P +N+ L+    +PYI IT+  + P            G Y
Sbjct: 68  TVSSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTRLTSIVHKDHGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C      H+ RPCL + + +C G C  E+    Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVWPLRRCTG----HQGRPCLYYHMGQCLGACFKEVPKSTYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             + + K+FL+G    +K+ +   M QA++  ++E A   RD+L  +         I N 
Sbjct: 183 AQIRKIKRFLNGDIAQVKQDLTEKMTQASMDLEFERAAEIRDQLKYIEQTVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +K+   IQ  F    +     T        +        F+ QFY  + 
Sbjct: 243 HTQRDIFNFYVDKSWISIQIFFLRQAKLLRRETRLFPLTDTNDPQDAFVSFIAQFYGQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P+ +L+    +  SL E+        KV +  P++G+K+ ++E A  NA        
Sbjct: 303 RVLPKEVLVPAGMDNESLSEVL-------KVPVRTPQRGQKKALLEMAHDNAKLKLDEKF 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HRIESFDHSHIQGADPVSALVVFTDGEADKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+S+L+K  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNAADEVGNTREVVRRRYSRLLKEHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K          F    KGE    + L+ +   
Sbjct: 461 GGQIQVEACLDVLRN-ELNVNIPVAGMVKDDHHRTNHLIFGDPTKGEELKLIPLDPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K A  S LDEI GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSKLDEIKGIGPKSRNKLLRKFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            + L    G++   A  +    
Sbjct: 580 VDELREA-GLTLPQAQTVKLSL 600


>gi|294785342|ref|ZP_06750630.1| excinuclease ABC subunit C [Fusobacterium sp. 3_1_27]
 gi|294487056|gb|EFG34418.1| excinuclease ABC subunit C [Fusobacterium sp. 3_1_27]
          Length = 589

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 188/613 (30%), Positives = 310/613 (50%), Gaps = 39/613 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M     +V+YVGKA NL+ R+ SY +  +   +   ++  I +I F +T 
Sbjct: 7   DIPESPGVYLMK-KNDKVIYVGKAKNLKNRVSSYFNRVHENEKTNELVKNIEDIEFFLTN 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           TE++ALLLE N+IK+  P++NILL+D+K++P+I I+ K   P++   R +       G Y
Sbjct: 66  TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKSGEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +  N L + F +R C   + +   RPCL + +K C+GPC  +   E+Y 
Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKVSPRPCLKYYMKSCTGPCVYKDIKEEYN 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V   K+ L G    L  ++   MN+A+   D+E +II+R+++  L  I +     Y R
Sbjct: 183 KDVENLKQVLRGNTSKLINELTALMNKASQDMDFEKSIIYREQIKELKAIASSQIIQYER 242

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      + A I       G+  G  +  +   ++ T+  I       +Y+   
Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301

Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P++++L  E E     +++    ++   K       +  ++++++ A  N  R      
Sbjct: 302 LPKSLVLDAEYENELSIVVKALTNEESKKKEFHFPKIKSRRKELLDMAYKNLERDLETYF 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +  +KD      L   P++IE +D S+I G  AV  M V  E    + +YRKF 
Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD +MMR V+ERR+S+L   +                +PDV+++DGG GQ+
Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADKD----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  VL+KL   +   ++S+AK  +     E +   +     L+     L   QR+RDE
Sbjct: 464 NSAGEVLEKLEKIHLSELLSLAKRDE-----EIYKYGESIPYSLSKDMEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K    S LD+INGIG +R++ LL  FG++  I +++ E L  I  +
Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKINGIGEVRRKKLLTKFGSISGIKKANIEELKEI--V 576

Query: 596 SKKIACKIYNHFH 608
            +K+A +I N   
Sbjct: 577 PEKVALEIKNKIR 589


>gi|237744870|ref|ZP_04575351.1| excinuclease ABC subunit C [Fusobacterium sp. 7_1]
 gi|229432099|gb|EEO42311.1| excinuclease ABC subunit C [Fusobacterium sp. 7_1]
          Length = 589

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 187/613 (30%), Positives = 310/613 (50%), Gaps = 39/613 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE  GVY M     +V+YVGKA NL+KR+ SY +  + + +   ++  I +I F +T 
Sbjct: 7   DIPESSGVYLMK-KNNKVIYVGKAKNLKKRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           TE +ALLLE N+IK+  P++NILL+D+K++P+I I+ K   P +   R +       G Y
Sbjct: 66  TETDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPNIKIVRTTKALDIKSGEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +  N L + F +R C   + +   RPCL + +K C+GPC  +   E+Y 
Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKLSPRPCLKYYMKSCTGPCVYKDIKEEYN 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V   K+ L G    L  ++   MNQA+   D+E +II+R+++  L  I++     Y R
Sbjct: 183 KNVENLKQVLRGNTSKLINELTTLMNQASQDMDFEKSIIYREQIKELKSIESSQIIQYER 242

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      + A I       G+  G  +  +   ++ T+  I       +Y+   
Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTAIDLKNKITDN-IYEAIFMSYYSKHI 301

Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P++++L  E E     +++    ++   K       +  ++++++ A  N  R      
Sbjct: 302 LPKSLVLDAEYENELSVVVKALTNEESKKKEFHFPKIKSRRKELLDMAYKNLERDLESYF 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +  +KD      L   P++IE +D S+I G  AV  M V  E    + +YRKF 
Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD +MMR V+ERR+S+L   +                +PDV+++DGG GQ+
Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  VL++L   +   ++S+AK  +     E +   +     L+     L   QR+RDE
Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K    S LD+++GIG +R++ LL  FG++  I ++S + L  I  I
Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKLDGIGEVRRKKLLTKFGSISGIKKASIDELKEI--I 576

Query: 596 SKKIACKIYNHFH 608
            +K+A +I N   
Sbjct: 577 PEKVALEIKNKIR 589


>gi|297205870|ref|ZP_06923265.1| excision endonuclease subunit UvrC [Lactobacillus jensenii JV-V16]
 gi|297148996|gb|EFH29294.1| excision endonuclease subunit UvrC [Lactobacillus jensenii JV-V16]
          Length = 603

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/622 (27%), Positives = 276/622 (44%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M +I G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 12  KLKLLPEQPGCYLMKNINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVKEIADFDII 70

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              ++ E+ LLE  +IK+ +P +N+ L+    +PYI IT+  K P            G Y
Sbjct: 71  TVTSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-EKDPQTRLTSIVHKDNGYY 129

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C      H+ RPCL + + +C G C  E+   KY 
Sbjct: 130 FGPYPNVYAAQATLRFIQKVWPLRRCNG----HQGRPCLYYHMGQCLGACFQEVPRSKYE 185

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             + + K+FL+G    +K+++   M  A+   ++E A   RD+L  +         I N 
Sbjct: 186 AQIAKIKRFLNGDITQVKQELTEKMQIASGNLEFERAAEIRDQLRYIEQTVEKQKIISND 245

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +K+   +Q  F    +     T        S        F+ QFY  K 
Sbjct: 246 HTQRDIFNFYVDKSWISVQIFFLRQAKLLRRETKMFPLMDLSDPKDEFMSFIVQFYNQKN 305

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P  +L+ E+ +  +L E+   K          P++G KR +++ A  NA        
Sbjct: 306 RILPREVLVPEDLDNGNLSEVLGVKVRT-------PQRGTKRDLLKMAKDNAKLKLDEKF 358

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +    +  K   LP+    IE +D+SHI G   V   VV  +    K  Y
Sbjct: 359 RLLELGNRKTKGAQAEIFKALGLPYG-HIIESFDHSHIQGTDPVSACVVFKDGEPFKTAY 417

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+S+++K                   PD++++D
Sbjct: 418 RKYKLKGEVEHQNGADEVGNTREVVRRRYSRMLKEH--------------SRLPDLILMD 463

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K          F     G+ L L   + +   
Sbjct: 464 GGQIQVDACLDVLRN-ELNCDIPVAGMVKDNHHHTNHLIFGDPINGKPLELIPMDPKSEG 522

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K +  S LD I GIGP  +  LL+ FG++K I  +S
Sbjct: 523 FYLMTRIQDEVHRFAITFHRQTHAKNSLASKLDGIKGIGPKSRNKLLKKFGSLKKIKDAS 582

Query: 586 PETLASIEGISKKIACKIYNHF 607
            E L    G++   A  +    
Sbjct: 583 VEELQDA-GLTLPQAQSVKLTL 603


>gi|34763036|ref|ZP_00144011.1| Excinuclease ABC subunit C [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887296|gb|EAA24392.1| Excinuclease ABC subunit C [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 589

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 185/613 (30%), Positives = 309/613 (50%), Gaps = 39/613 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M     +V+YVGKA NL+ R+ SY +  +   +   ++  I +I F +T 
Sbjct: 7   DIPESPGVYLMK-KNDKVIYVGKAKNLKNRVSSYFNRVHENEKTNELVKNIEDIEFFLTN 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           TE++ALLLE N+IK+  P++NILL+D+K++P+I I+ K   P++   R +       G Y
Sbjct: 66  TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFPSIKIVRTTKALDIKSGEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +  N L + F +R C   + +   RPCL + +K C+GPC  +   E+Y 
Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKVSPRPCLKYYMKSCTGPCVYKDIKEEYN 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V   K+ L G    L  ++   M++A+   D+E +II+R+++  L  I +     Y R
Sbjct: 183 KDVENLKQVLRGNTSKLINELTTLMDKASQDMDFEKSIIYREQIKELKAIASSQIIQYER 242

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      + A I       G+  G  +  +   ++ T+  I       +Y+   
Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301

Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P++++L  E E     +++    ++   K       +  ++++++ A  N  R      
Sbjct: 302 LPKSLVLDAEYENELAVVVKALTNEEGKKKEFHFPKIKSRRKELLDMAYKNLERDLETYF 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +  +KD      L   P++IE +D S+I G  AV  M V  E    + +YRKF 
Sbjct: 362 SKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD +MMR V+ERR+S+L   +                +PDV+++DGG GQ+
Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  VL++L   +   ++S+AK  +     E +   +     L+     L   QR+RDE
Sbjct: 464 NSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESIPYSLSKDMEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K    S LD+INGIG +R++ L   FG++  I +++ E L  I  +
Sbjct: 519 AHRFGITYHRKLRSKRIISSELDKINGIGEVRRKKLFTKFGSISGIKKANIEELKEI--V 576

Query: 596 SKKIACKIYNHFH 608
            +K+A +I N   
Sbjct: 577 PEKVALEIKNKIR 589


>gi|239616736|ref|YP_002940058.1| excinuclease ABC, C subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505567|gb|ACR79054.1| excinuclease ABC, C subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 574

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 171/608 (28%), Positives = 291/608 (47%), Gaps = 49/608 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIR 59
              ++PE PG+Y   +  G ++Y+GKA  L+KR+ SY  ++ H    +   +  +I+++ 
Sbjct: 8   KVRELPEKPGIYLFKNKKGEIIYIGKAKKLRKRVSSYFRASTHEQNGKTRELYQEIDDLE 67

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119
           F V  TE EALLLEAN+I + KP+FN+LL+D K +PYI I+D    P +   R     +G
Sbjct: 68  FIVVPTEKEALLLEANLIYQHKPKFNVLLKDSKRYPYIFISDDE-FPYISITR-IRDRKG 125

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP+ S+  V   ++ LQR F LRSC D+    + RPC L+ +K CS P  GEIS  +
Sbjct: 126 FYYGPYTSITLVRNLLDLLQRIFKLRSCMDNRDCKKGRPCFLYHLKMCSAPLAGEISHAE 185

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + V     FL G   +++ ++ R+M +      +E A   RD L +   + +      
Sbjct: 186 YQKQVRGFMDFLDGKTLDVRRQLERSMQRLAENLQFEKAKEIRDVLVSFDRLYSKQAVDV 245

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
           +     + +   +   +       G   G  TF      +     +  +  + +Y     
Sbjct: 246 SES-YTADFIVLDSGIVTLLEVRGGLLLGKLTF------DFPEGNLKDFIQQFYYGQNHR 298

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
              +L+     ++ + EI+   +Y    +    K         + L+ A  +  ++L   
Sbjct: 299 KPPVLIVPGLNKSEIKEIAEDFEYIGNPRSEEEK---------RLLLIASDNTIEELRIR 349

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
           +  Q  LK   +   L  IP+ IE  D SH  G   V  +VV       K  YR++ +  
Sbjct: 350 LKVQQSLKMAKELLGLNKIPRIIEGVDISHTQGVYTVASVVVFRNGQPDKISYRRYRI-- 407

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
            ++   +D   +++++ RR+S+                      PD++++DGG  QL+A 
Sbjct: 408 TELNEPNDFEALKILMRRRYSK-------------------HPPPDLLLVDGGAPQLAAV 448

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           +  L++L +  +I  I +AK  +     E  F      L L+   P+L  +  +RDE+HR
Sbjct: 449 RESLEELGL-KKIDFIGLAKEEE-----EIVFPDNRGRLKLSPDHPVLRLLTTIRDESHR 502

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA+  HR  R +K + S LD+I GIGP RKR L+++FG+V  I ++S E L  +   ++K
Sbjct: 503 FAVNYHRVLRERKFSTSRLDDIPGIGPKRKRALVRAFGSVTNIKKASKEELMKVIK-NRK 561

Query: 599 IACKIYNH 606
           +  +I   
Sbjct: 562 VVEQILAW 569


>gi|256850987|ref|ZP_05556376.1| excinuclease ABC, C subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661199|ref|ZP_05862113.1| excinuclease ABC, C subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282932060|ref|ZP_06337518.1| excinuclease ABC, C subunit [Lactobacillus jensenii 208-1]
 gi|256616049|gb|EEU21237.1| excinuclease ABC, C subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548136|gb|EEX24112.1| excinuclease ABC, C subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281303827|gb|EFA95971.1| excinuclease ABC, C subunit [Lactobacillus jensenii 208-1]
          Length = 600

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/622 (27%), Positives = 275/622 (44%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M +I G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPEQPGCYLMKNINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVKEIADFDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              ++ E+ LLE  +IK+ +P +N+ L+    +PYI IT+  K P            G Y
Sbjct: 68  TVTSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-EKDPQTRLTSIVHKDNGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C      H+ RPCL + + +C G C  E+   KY 
Sbjct: 127 FGPYPNVYAAQATLRFIQKVWPLRRCNG----HQGRPCLYYHMGQCLGACFQEVPRSKYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             + + K+FL+G    +K+++   M  A+   ++E A   RD+L  +         I N 
Sbjct: 183 AQIAKIKRFLNGDITQVKQELTEKMQIASGNLEFERAAEIRDQLRYIEQTVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +K+   +Q  F    +     T        S        F+ QFY  K 
Sbjct: 243 HTQRDIFNFYVDKSWISVQIFFLRQAKLLRRETKMFPLMDLSDPKDEFMSFIVQFYNQKN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P  +L+ E  +  +L E+   K          P++G KR +++ A  NA        
Sbjct: 303 RILPREVLVPEGLDNDNLSEVLGVKVRT-------PQRGTKRDLLKMAKDNAKLKLDEKF 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +    +  +   LP+    IE +D+SHI G   V   VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQAEIFQALGLPYG-HIIESFDHSHIQGTDPVSACVVFKDGEPFKTAY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+S+++K                   PD++++D
Sbjct: 415 RKYKLKGEVEHQNGADEVGNTREVVRRRYSRMLKEH--------------SQLPDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K          F     G+ L L   N +   
Sbjct: 461 GGQIQVDACLDVLRN-ELNCDIPVAGMVKDNHHHTNHLIFGDPINGKPLELIPMNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K +  S LD I GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRQTHAKNSLASKLDGIKGIGPKSRNKLLKKFGSLKKIKDAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            E L    G++   A  +    
Sbjct: 580 VEELQDA-GLTLPQAQSVKLTL 600


>gi|328467453|gb|EGF38528.1| excinuclease ABC subunit C [Lactobacillus helveticus MTCC 5463]
          Length = 600

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/619 (28%), Positives = 287/619 (46%), Gaps = 46/619 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M DI G V+YVGK+ NL+ R++SY   +    R   ++ +I +    
Sbjct: 9   KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYF-KSMQVGRRAELVREIRDYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              T+ EA LLE  +IK+ +P +N+ L+    +PYI IT +H  P            G Y
Sbjct: 68  TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVCKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ F LR C         RPCL + + +C G C  ++  ++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E + + K+FL+G    +K+ + + M QA+ + ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKRFLNGDIGAVKQDLTQKMEQASEQLEFERAAEIRDQLKYIEETVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             + D F+ Y +K+   IQ  F    +     T        +      + F+ QFY  K 
Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDTTDPEDAFTSFIVQFYGQKN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ +L+    +  +L E+         V +  P++G+K+ +++ A  NA      K 
Sbjct: 303 RVLPKEVLIPAGFDNDTLAEVL-------TVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTSY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+ +L++  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A + VL+   +   I +  + K  K       F     G     + LN +   
Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGVPLKLIPLNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+R  K A  S LD I GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRKFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIY 604
            + L +  G++   A  + 
Sbjct: 580 VDDLRAA-GLTLPQAQTVK 597


>gi|323466678|gb|ADX70365.1| Excision endonuclease subunit UvrC [Lactobacillus helveticus H10]
          Length = 588

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/615 (28%), Positives = 286/615 (46%), Gaps = 46/615 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           MPE PG Y M DI G V+YVGK+ NL+ R++SY   +    R   ++ +I +       T
Sbjct: 1   MPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYF-KSMQVGRRAELVREIRDYDIITVST 59

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE  +IK+ +P +N+ L+    +PYI IT +H  P            G YFGP+
Sbjct: 60  DKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVCKDGGYYFGPY 118

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A + T+  +Q+ F LR C         RPCL + + +C G C  ++  ++Y E + 
Sbjct: 119 PNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYDEQIK 174

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K+FL+G    +K+ + + M QA+ + ++E A   RD+L  +         I N   + 
Sbjct: 175 KIKRFLNGDIGAVKQDLTQKMEQASEQLEFERAAEIRDQLKYIEETVEKQKIISNDNTQR 234

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--CP 300
           D F+ Y +K+   IQ  F    +     T        +      + F+ QFY  K    P
Sbjct: 235 DIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDTTDPEDAFTSFIVQFYGQKNRVLP 294

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS--- 357
           + +L+    +  +L E+         V +  P++G+K+ +++ A  NA      K     
Sbjct: 295 KEVLIPAGFDNDTLAEVL-------TVPVRTPQRGQKKSLLDMAKDNAKLKLDDKFRLLE 347

Query: 358 -TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                     K+      LP+    IE +D+SHI G   V  +VV  +    K  YRK+ 
Sbjct: 348 LGNRKTMGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTAYRKYK 406

Query: 417 LHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           L          D+    R V+ RR+ +L++  + +              PD++++DGG+ 
Sbjct: 407 LKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMDGGQI 452

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPILYFI 530
           Q+ A + VL+   +   I +  + K  K       F     G     + LN +    Y +
Sbjct: 453 QVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGVPLKLIPLNPKSEGFYLM 511

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            R++DE HRFAIT HR+R  K A  S LD I GIGP  +  LL+ FG++K I  +S + L
Sbjct: 512 TRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRKFGSLKKIKEASVDDL 571

Query: 590 ASIEGISKKIACKIY 604
            ++ G++   A  + 
Sbjct: 572 RAV-GLTLPQAQTVK 585


>gi|227509456|ref|ZP_03939505.1| excinuclease ABC subunit C [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227191168|gb|EEI71235.1| excinuclease ABC subunit C [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 589

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/609 (28%), Positives = 280/609 (45%), Gaps = 43/609 (7%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M DI G+++YVGKA NL+ R++SY   ++H  +   ++S+I +    +T T+ EA LLE 
Sbjct: 1   MKDINGKIIYVGKAKNLKNRVRSYF-KSSHEGKTARLVSEIADFETIITSTDKEAFLLEI 59

Query: 75  NMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
            +I++ +P FNI L+   S +PYI IT+  + P +            YFGP+ +V A E+
Sbjct: 60  TLIQKHRPYFNIKLKQGHSGYPYIKITN-ERDPQIKIVNTLLKDGAYYFGPYPNVYAAEE 118

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           T+N LQ+ + LR C         RPCL + + +C G C   +  E Y   +   K FL+G
Sbjct: 119 TVNFLQKVYPLRRCNGFQ----NRPCLYYHMGQCLGACFKVVPEEVYDRQIKRIKSFLNG 174

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
              + K+ +A+ M  A+    YE A   RD +  +         I +     D F+ Y N
Sbjct: 175 NVGHAKQMLAKRMEDASANMAYERAAEIRDLIKYIEITVEKQKIISHDNTPRDIFNYYMN 234

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310
           K    IQ  F    +            ++     +          ++  P+ IL+     
Sbjct: 235 KGWLSIQVFFIRQSRLMKREKRLFPIITDPEEEMVSFISQFYKQKNQILPKEILVPSS-- 292

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMIL 366
               L           V +  PK+G+KR ++E A  NA              E      +
Sbjct: 293 ----LPSDVVSSVVDDVPVRTPKRGQKRDLLEMAGKNAQLVLEEKFRLLELDESKTTGAM 348

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           K+ T    +P    ++E +D+SHI G   V  MVV  +    KN YRK+ L    V   D
Sbjct: 349 KELTDAMGIP-EGHKVEAFDHSHIQGADLVSAMVVFVDGQPNKNLYRKYKLKT--VDHAD 405

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-LKK 485
           + A  R V+ RR+++L+K                   PD++++DGG  Q++A + V + +
Sbjct: 406 EAASTREVIRRRYTRLLKEH--------------AQMPDLILMDGGTIQMNAVKDVLVNE 451

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L ++  I +  + K        +  F      L L+ +    Y +QR++DE HRFAIT H
Sbjct: 452 LGLD--IPVGGMVKNEHHQTA-DLLFGDSDTPLHLDPKSQGFYLLQRIQDEVHRFAITYH 508

Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           RK   K +  S LD I G+GP  +  LL+ FG++K IS +  + L ++ GIS+ +A  I 
Sbjct: 509 RKVHAKNSLGSRLDSIAGVGPKTRNKLLRKFGSLKKISEAPVDDLKAL-GISETVAQTIK 567

Query: 605 NHFHKNTSH 613
               K  + 
Sbjct: 568 FSLSKIDAE 576


>gi|161507438|ref|YP_001577392.1| excinuclease ABC subunit C [Lactobacillus helveticus DPC 4571]
 gi|189038061|sp|A8YV13|UVRC_LACH4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|160348427|gb|ABX27101.1| Excinuclease ABC subunit C [Lactobacillus helveticus DPC 4571]
          Length = 600

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/619 (28%), Positives = 287/619 (46%), Gaps = 46/619 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              T+ EA LLE  +IK+ +P +N+ L+    +PYI IT +H  P            G Y
Sbjct: 68  TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVCKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ F LR C         RPCL + + +C G C  ++  ++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E + + K+FL+G    +K+ + + M QA+ + ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKRFLNGDIGAVKQDLTQKMEQASEQLEFERAAEIRDQLKYIEETVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             + D F+ Y +K+   IQ  F    +     T        +      + F+ QFY  K 
Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDITDPEDAFTSFIVQFYGQKN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ +L+    +  +L E+         V +  P++G+K+ +++ A  NA      K 
Sbjct: 303 RVLPKEVLIPAGFDNDTLAEVL-------TVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTAY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+ +L++  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A + VL+   +   I +  + K  K       F     G     + LN +   
Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGVPLKLIPLNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+R  K A  S LD I GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRKFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIY 604
            + L +  G++   A  + 
Sbjct: 580 VDDLRAA-GLTLPQAQTVK 597


>gi|313848323|emb|CBY17326.1| putative nuclease [Chlamydophila psittaci RD1]
 gi|328915007|gb|AEB55840.1| excinuclease ABC, C subunit [Chlamydophila psittaci 6BC]
          Length = 648

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 176/607 (28%), Positives = 293/607 (48%), Gaps = 38/607 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            + +P  PGVY M D +G VLY+GKA NL+ RI +Y      +  RI  ++ +  +I   
Sbjct: 8   PKLIPTSPGVYLMKDSSGEVLYIGKAKNLRNRISTYFRKQGDSRERIPFLMKKTTDIETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118
           +   E EA LLE N+IK+  P++N+LL+DDK+F  + I+  H  P +   R     S+ +
Sbjct: 68  LVSNETEAFLLENNLIKKYHPKYNVLLKDDKTFFCLAISLTHLWPKIDVIRTKAVTSSKK 127

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
              FGP+ S +A    +  + + F LR+C++  F  R RPC+L+++KRC  PC    S E
Sbjct: 128 QIIFGPYVSAEACRTLLEVISQWFPLRTCSNREFASRKRPCILYEMKRCLAPCVNLCSHE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y + + +A  FL G    + + + +++ +A+ ++ +E A ++   L  +          
Sbjct: 188 EYEQTLEKAILFLKGQVSEVVQDLEKSIEKASKEQKFEQAGMYYRTLQLIQQAMVKQHVE 247

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +  +D   LY       I       G+  G   F    +++     + S+ L+ + +
Sbjct: 248 KFHFQNIDAIGLYRKYQKTVITILTIRSGKLLGARHFPFSENAQEDADLLASFILQYYTS 307

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ IL         L             ++  PK G  R+++  A  NA       
Sbjct: 308 QPQTPKEILTPIPLNIPDLP---CLLNKDTPPQLRSPKTGYGRELLNLAKNNAQVHAETT 364

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           +    S  +  ++  K       P RIE YDN+H+ G  AVG  +V   +      YR F
Sbjct: 365 I---QSSALPYEELKKILKSSDYPYRIECYDNAHLQGSHAVGVYIVYENDALSPKDYRTF 421

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           ++  +     +D A  R VL RRF+ L                   S PD++++DGG+ Q
Sbjct: 422 SISSS---AYNDLAAFREVLSRRFTSLT-----------------SSIPDMILIDGGRTQ 461

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSA---GMEKFFVKK-GEALVLNMRDPILYFIQ 531
            + A+  LK+LN+   I ++SIAK     +     EK F     + ++L     +L F Q
Sbjct: 462 YAQAKKTLKELNLTG-IQVVSIAKEAGSHSSSLKKEKLFCDTFPQGVLLPPTSKLLQFFQ 520

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +LRDEAHRFAI+ HRK+R K    P ++I GIG ++++ LLQ F + + + ++S   L +
Sbjct: 521 KLRDEAHRFAISRHRKKRHKDFLLPKEKIPGIGEIKRKRLLQKFKSWEQVMKASQGELEA 580

Query: 592 IEGISKK 598
           I G++KK
Sbjct: 581 IPGLTKK 587


>gi|123966197|ref|YP_001011278.1| excinuclease ABC subunit C [Prochlorococcus marinus str. MIT 9515]
 gi|123200563|gb|ABM72171.1| Excinuclease ABC subunit C (UvrC) [Prochlorococcus marinus str. MIT
           9515]
          Length = 644

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 183/625 (29%), Positives = 302/625 (48%), Gaps = 37/625 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+  G Y   D+   +LY+GK+  L+ R+ SY ++  + + R+  M+ QI  I   VT
Sbjct: 34  EIPKSSGCYLFKDLDNNLLYIGKSKTLRNRVSSYFNNYADLSPRLCLMVRQITEIDIIVT 93

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG--SY 121
            +E EAL LE+N+IK  KP FNILL+DDK +PY+ IT   K P ++  R          Y
Sbjct: 94  DSEYEALNLESNLIKTNKPYFNILLKDDKKYPYLCITWSEKYPKIFITRKRRNRNNLDRY 153

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+  V  +  T+  +++ F LR    S              +  +G    +ISSE+Y 
Sbjct: 154 YGPYVDVGLLRNTLFLIKKIFPLRHSKLSK----------SFYREITGVDLEKISSEEYK 203

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           + + +A     G N +L + + + M+  + +  YE A   RD++  L  +          
Sbjct: 204 KIMKQASMVFQGRNDDLIKILEKKMSFYSTELQYEKAAKIRDQINGLRLLTESQKISIPD 263

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F +   KN+A IQ      G+  G   +  K +     ++IL   L + Y + 
Sbjct: 264 SSINRDIFGIVSEKNIASIQIFQMRSGKLIGRIGYSQKLNGLQ-ESEILQRILEEHYINV 322

Query: 298 ---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P  IL+    ++  ++E    +    KVKI  PK+  K K IE    NA     +
Sbjct: 323 EGIEIPSEILVQYNFQKIKIIEEWLSEIKQKKVKIINPKRSNKLKTIEMVQKNARLELNR 382

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            L+    ++  ++D ++   L   P+R+E YD SHI G   V   VV  +    K  YRK
Sbjct: 383 ILNGIQDNESAIEDLSQILDLSIHPRRLEGYDISHIQGTDPVASQVVFIDGLPSKQNYRK 442

Query: 415 FNLHPNDVK--TQDDCAMMRMVLERRFSQLIKNEENL--------NFHPKKQEYSFPSWP 464
           + +  ++V     DD A +  V+ RRF +  + ++N                   F  WP
Sbjct: 443 YKIKDSNVYIGHSDDYASIYEVIHRRFRKWSRYKQNGGNLSTINNTKQSSLDNELFSDWP 502

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D+V++DGGKGQL++A   L++L++E  + + S+AK  +     E +     + L  +M  
Sbjct: 503 DLVMIDGGKGQLNSAYKALEELDLEKDVILCSLAKKNE-----EIYVPGLTKPLNTDMNQ 557

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             +  ++RLRDEAHRFA++ HR +R +    S L +I G+G  R + LL+ F +V  I  
Sbjct: 558 KGVMLLRRLRDEAHRFALSFHRNKRSRRMNRSQLTQIPGLGSSRIKDLLEHFNSVDAIRI 617

Query: 584 SSPETLASIEGISKKIACKIYNHFH 608
           +S E L  ++G+    A  IY++F+
Sbjct: 618 ASKEELMKVKGLGSNTAKDIYDYFN 642


>gi|257125389|ref|YP_003163503.1| excinuclease ABC, C subunit [Leptotrichia buccalis C-1013-b]
 gi|257049328|gb|ACV38512.1| excinuclease ABC, C subunit [Leptotrichia buccalis C-1013-b]
          Length = 594

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 181/616 (29%), Positives = 284/616 (46%), Gaps = 39/616 (6%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIR 59
           +  + +P  PGVY M +  G+++YVGKA NLQ R+KSY  + N+H  +   ++  I +I 
Sbjct: 9   IKYKDIPTHPGVYLMKNERGKIIYVGKAKNLQNRVKSYFMNINSHNQKTMELVKNIKDIE 68

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--I 117
           F +  +EVEAL+LE N+IK+ KP++NILL+D+K++PYI  T K K P +   R +     
Sbjct: 69  FFICKSEVEALILENNLIKKNKPKYNILLKDEKTYPYIKFT-KEKFPKVEIVRSTKKLNE 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              YFGP+                 F     +      T+PCL + +K C  PC  +   
Sbjct: 128 NAEYFGPYP---MGIFFAMKTLLKIFPMRDCNRSMDKITKPCLKYYMKTCPAPCKYKDIE 184

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           ++Y   V   K FL G +  + E +   M + + + ++E AI  R++LA L  +      
Sbjct: 185 DEYSTNVKNFKNFLKGHSDKVIEMLESRMKKFSDEMEFERAINEREKLAVLKRMLETQII 244

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
            Y+     D F     +    +       G+        +  +       +    +  +Y
Sbjct: 245 EYSKEIDEDVFVFEEKRENVFLCVLNIREGKVINKNDIIISLERSQEEN-LFERLITSYY 303

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII--EQALINAHRSH 352
             +  P++I+  E    + LL   + K   +K       +   R++   E   +N     
Sbjct: 304 EKRNIPKHIICDERFMSSELLIKEWAKIEKHKEIKLHFPKINSRRLQLLEMGYLNLREEV 363

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
            +        Q  L++  K+  L  +P RIE +D S+I G  AV  M V  +      +Y
Sbjct: 364 DKYYRKRRMVQEGLRNLKKELRLKSLPYRIECFDISNIQGKDAVAAMTVALDGETTPKEY 423

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           R F +   D    DD  MMR  L RR+S++  ++                 P+++++DGG
Sbjct: 424 RHFKITVKDTP--DDFLMMREALTRRYSKIENDK----------------MPNLILIDGG 465

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KGQL  A  VL+KL       +I IAK  +     E F   + E  +    D  L  +QR
Sbjct: 466 KGQLGVAVDVLEKLGKIEHTDVIGIAKREE-----EIFKSYESEPYLFEKTDETLKILQR 520

Query: 533 LRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRF IT HRK R K    S LD+I GIGP RK+ L++ FG +K I  ++ E L  
Sbjct: 521 LRDEAHRFGITHHRKLRSKRNVKSALDDITGIGPKRKKELIKKFGLIKNIRNATLEELME 580

Query: 592 IEGISKKIACKIYNHF 607
           +  + + IA  I  + 
Sbjct: 581 V--VPENIAISIKENL 594


>gi|297170619|gb|ADI21645.1| nuclease subunit of the excinuclease complex [uncultured
           myxobacterium HF0130_06F04]
          Length = 595

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 184/611 (30%), Positives = 291/611 (47%), Gaps = 36/611 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +  G+V Y+GKA NL+ R+KSY   ++    +  +   + +I   +T TE EAL++E 
Sbjct: 1   MKNAKGKVFYIGKAKNLRNRLKSYFSGSDTRAFVLLLDRLLADIEVILTPTEQEALIVEN 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           ++IK  +P+ NI L DDK +  + +  +   P +   R        YFGP++S  ++ +T
Sbjct: 61  DLIKEHRPKHNIKLVDDKRYLCLRLDTRKDYPRMEIRRSFKRDGARYFGPYSSATSIRQT 120

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           +N L R F LR+C D V  +R+RPCL +QIKRC  PC  ++S   Y + V     FL G 
Sbjct: 121 LNILNRYFQLRTCTDHVLNNRSRPCLQYQIKRCPAPCVYDLSDGSYSKNVEATIAFLDGR 180

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND---SIYNRMDCFSLYHNK 251
           +  L EK+ + M +     +YE A   RD+L A+       D     +   D   +Y   
Sbjct: 181 HETLIEKLEQEMKEKAAALEYEDAARIRDQLKAIRRTLEKQDLINPDFMDRDIIGIYREG 240

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
               I       G+  G     L      T   +  +  R + T    P  +L+ E+ + 
Sbjct: 241 PAIEIHVLMSRGGRVFGAQRCSLDDSELPTQEVLTDFLSRYYQTTHNFPTEVLIPEDVDW 300

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
              +     ++ G +V +  PK+G KR++I+ A  NA ++   K+  + + Q  +    +
Sbjct: 301 AEEVGQLITQRAGRRVVLMHPKRGRKRRLIDMAHQNARQAFQDKVREQGAAQTAVDKLQR 360

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
              L   P R+E +D SH  G   V   V        K  YR++ +       QDD   M
Sbjct: 361 ALHLRLPPIRMECFDISHFQGSEIVASCVSFQAGVPHKGGYRRYKIRSTTT--QDDFQSM 418

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
             V+ RR  + ++ ++                PD++++DGG+GQL AA+  L    + N 
Sbjct: 419 YEVISRRARRGLEKDD---------------LPDLMVIDGGRGQLGAARAALDDHGI-NH 462

Query: 492 ITIISIAKG------------PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           + +I++AK             PK  A    F   +   +VL      L+ + R RDEAHR
Sbjct: 463 LDLIALAKARQASSEVDKSSSPKIRAFERVFLEGRKNPVVLRPNSSELFMLTRARDEAHR 522

Query: 540 FAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA+  +R  RRKKA  S LDEI GIGP RKR LL+SFG+++ + ++S + +A   G   K
Sbjct: 523 FAVEYNRSARRKKAHSSILDEIPGIGPARKRKLLKSFGSIQRLEKASEKEIAKTVG--PK 580

Query: 599 IACKIYNHFHK 609
           IA  I+   H 
Sbjct: 581 IARLIHAKLHP 591


>gi|104773886|ref|YP_618866.1| excinuclease ABC subunit C [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513892|ref|YP_812798.1| excinuclease ABC subunit C [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|119367661|sp|Q1GAM4|UVRC_LACDA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|122275338|sp|Q04B12|UVRC_LACDB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|103422967|emb|CAI97638.1| Excinuclease ABC, subunit C [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093207|gb|ABJ58360.1| Excinuclease ABC subunit C [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 600

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/620 (28%), Positives = 284/620 (45%), Gaps = 48/620 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE  G Y M D+ G+V+YVGK+ NL+ R++SY  S+    R   ++  I +    
Sbjct: 9   KLKLLPEKAGCYLMKDVNGKVIYVGKSKNLKNRVRSYFKSSQEGRR-AELVKNIADYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L+    +PYI IT+  K P           +G Y
Sbjct: 68  VVDSDKEAFLLEVTLIKKYQPYYNVALKSGTGYPYIEITN-EKNPQTRLTSIVYKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A   T+  +Q+ F LR C+        RPCL + + +C G C  E+   +Y 
Sbjct: 127 FGPYPNVYAASATLKFIQKVFPLRRCSGYT----GRPCLYYHMGQCLGSCFKEVPQSEYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E + + K+FL+G    +K+ +   M QA+   ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKRFLNGDIQEVKKDLTNKMLQASADLEFERAGELRDQLKYIEETVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +++   IQ  F    +     +       E+        F+ QFY  K 
Sbjct: 243 HTQRDIFNYYVDRSWISIQVFFLRQAKLLRRESHMFPLTDETDPEDEFMSFIAQFYAQKN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  +L+ +  ++  L      K          P++G+K  ++E A  NA      K 
Sbjct: 303 RVNPREVLVPKGIDQDELAAAIGIKVRT-------PQRGQKASLMEMARENAQLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                 +   +   ++  K   LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGQRKTKGAQEEIFKALGLPYGSY-IESFDHSHIQGADPVSALVVFKDGEPFKTGY 414

Query: 413 RKFNLHPNDVKTQ--DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+L+K  E                PD++++D
Sbjct: 415 RKFKLKGEVEHQNSADEVGNTREVVRRRYSRLLKEHE--------------RMPDLILMD 460

Query: 471 GGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDP 525
           GG+ Q+ A + V   +LN++  I +  + K  K       +    KG+   L   + +  
Sbjct: 461 GGQIQVEACEDVLRNELNLD--IPVAGMVKDDKHRTNHLLYGDPFKGQPFKLIPMDPKSE 518

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
             Y + R++DE HRFAIT HR+   K +  S LD I GIGP  +  LL+ FG++K I  +
Sbjct: 519 GFYLMTRIQDEVHRFAITFHRQTHAKNSLVSRLDSIKGIGPKSRTKLLREFGSLKKIKEA 578

Query: 585 SPETLASIEGISKKIACKIY 604
           S + L    G++   A  + 
Sbjct: 579 SIDDLRKA-GLTLTQAQAVK 597


>gi|295692858|ref|YP_003601468.1| uvrABC system protein c [Lactobacillus crispatus ST1]
 gi|295030964|emb|CBL50443.1| UvrABC system protein C [Lactobacillus crispatus ST1]
          Length = 600

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 177/622 (28%), Positives = 283/622 (45%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              T+ EA LLE  +IK+ +P +N+ L+    +PYI IT +H  P            G Y
Sbjct: 68  TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVHKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ F LR C         RPCL + + +C G C  ++  ++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E + + K FL+G   ++K+ +   M QA    ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKSFLNGDIASVKQSLTEKMAQAASNLEFERAAEIRDQLKYIEETVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             + D F+ Y +K+   +Q  F    +     T        +      + F+ QFY  + 
Sbjct: 243 NTQRDIFNYYVDKSWISVQIFFLRQAKLLRRETRMFPLTDATDPEDAFTSFIVQFYEQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ IL+ E  +  +L E+        KV +  P++G+K+ +++ A  NA      K 
Sbjct: 303 RVLPKEILIPEGFDNATLAEVL-------KVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALDLPYG-HFIESFDHSHIQGADPVSALVVFKDGEPEKTAY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+ +L++  +                PD++++D
Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHK--------------RMPDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEAL---VLNMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K  K       F     G  L    LN +   
Sbjct: 461 GGQIQVDACLDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLTPLNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+R  K A  S LD I GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLREFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            + L    G++   A  +    
Sbjct: 580 IDDLRRA-GLTLTQAQTVKLTL 600


>gi|157825946|ref|YP_001493666.1| excinuclease ABC subunit C [Rickettsia akari str. Hartford]
 gi|189038079|sp|A8GP33|UVRC_RICAH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157799904|gb|ABV75158.1| excinuclease ABC subunit C [Rickettsia akari str. Hartford]
          Length = 651

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 221/643 (34%), Positives = 334/643 (51%), Gaps = 37/643 (5%)

Query: 1   MSSEQM--PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
           + S+ +  PE  GVY+M D+  +V+YVGKA NL+KR+  Y   ++  ++   MI+    +
Sbjct: 11  IKSKLIDAPERCGVYRMFDVNKQVIYVGKAKNLKKRLTHY-IKSDLDNKTLRMIANTCFL 69

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            +++T +EVEALLLEA +IK+ +P+FNILL+DDKSFP+I +   H  P L K+R  +   
Sbjct: 70  EYSITNSEVEALLLEAQLIKKFQPKFNILLKDDKSFPFIKLRLDHDFPQLLKYRGKTLND 129

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G  FGPFAS   V  T+  LQ+ F LRSC D+ F  RTRPC+ ++IKRC  PC G+I+ E
Sbjct: 130 GKCFGPFASATEVNTTLTELQKIFKLRSCTDNYFNSRTRPCMQYEIKRCYAPCVGKINKE 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y + V + K FL G    L+E +++ M + + +  +E A   RDR+ ALS++Q  +   
Sbjct: 190 DYRDLVAQVKDFLQGRTKALQENLSKKMEELSSQMRFEEAAEIRDRIKALSYVQLKSCVS 249

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D   +       C++   +   Q  G   +F  +   ST  ++L YFL QFY  
Sbjct: 250 DIVKDADIIVVVEKNGHYCVEVFLYRAWQACGNIPYFPTSTENSTKEEVLEYFLLQFYQK 309

Query: 297 KPCPENILLSEEAEETSLLEISFFK-QYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           +  P  I+++ E  +   +  +  K     K+ I +P  G K K+++ A I A  S  Q 
Sbjct: 310 QQVPAEIIINHEINDKENMIEAIKKINNITKLNIIIPISGGKAKLVQNAAIKALFSLEQY 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L   + +Q I+ +    F L  IP+RIEIYDNSHI G  AVG +VVVG+ GF K +YR F
Sbjct: 370 LKKFVKNQEIMLEIKALFGLHEIPERIEIYDNSHIQGKFAVGVVVVVGKAGFDKKEYRVF 429

Query: 416 NLHP----------------------------NDVKTQDDCAMMRMVLERRFSQLIKNEE 447
           +L                              + V    +                   +
Sbjct: 430 SLSSCDASLSSHAYPFSPRNLIAGSSTLTNPMDPVVRSREDDTSSTHNYAVGDDYEMLRQ 489

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
            L     + +      P ++I+DGGKG L   + V+ K  +   I  + ++KG  R+AG+
Sbjct: 490 VLIRRLTRLKNEPHKLPSLMIIDGGKGHLGIVKEVMDKFAMH--IPFVCMSKGVDRNAGI 547

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPL 566
           E+F +   E   L+   PI+ ++Q LRDEAH FAI  HR  R +A   S LD I G+G  
Sbjct: 548 EQFHMTGKEVFTLDTNLPIMKYLQILRDEAHNFAIKNHRLGRSRAIKISSLDNIEGVGET 607

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           RK+ LL  FG+ K +  ++ + L  + GI+K +A  I+   HK
Sbjct: 608 RKKALLHYFGSYKAVCDATIDELTKVNGINKSLAAMIFRTLHK 650


>gi|300812696|ref|ZP_07093105.1| excinuclease ABC, C subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496323|gb|EFK31436.1| excinuclease ABC, C subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 600

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/620 (28%), Positives = 284/620 (45%), Gaps = 48/620 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE  G Y M D+ G+V+YVGK+ NL+ R++SY  S+    R   ++  I +    
Sbjct: 9   KLKLLPEKAGCYLMKDVNGKVIYVGKSKNLKNRVRSYFKSSQEGRR-AELVKNIADYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L+    +PYI IT+  K P           +G Y
Sbjct: 68  VVDSDKEAFLLEVTLIKKYQPYYNVALKSGTGYPYIEITN-EKNPQTRLTSIVYKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A   T+  +Q+ F LR C+        RPCL + + +C G C  E+   +Y 
Sbjct: 127 FGPYPNVYAASATLKFIQKVFPLRRCSGYT----GRPCLYYHMGQCLGSCFKEVPQSEYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E + + K+FL+G    +K+ +   M QA+   ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKRFLNGDIQEVKKDLTNKMLQASADLEFERAGELRDQLKYIEETVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +++   IQ  F    +     +       E+        F+ QFY  K 
Sbjct: 243 HTQRDIFNYYVDRSWISIQVFFLRQAKLLRRESHMFPLTDETDPEDEFMSFIAQFYAQKN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  +L+ +  ++  L      K          P++G+K  ++E A  NA      K 
Sbjct: 303 RVKPREVLVPKGIDQDELAAAIGIKVRT-------PQRGQKASLMEMARENAQLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                 +   +   ++  K   LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGQRKTKGAQEEIFKALGLPYGSY-IESFDHSHIQGADPVSALVVFKDGEPFKTGY 414

Query: 413 RKFNLHPNDVKTQ--DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+L+K  E                PD++++D
Sbjct: 415 RKFKLKGEVEHQNSADEVGNTREVVRRRYSRLLKEHE--------------RMPDLILMD 460

Query: 471 GGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDP 525
           GG+ Q+ A + V   +LN++  I +  + K  K       +    KG+   L   + +  
Sbjct: 461 GGQIQVEACEDVLRNELNLD--IPVAGMVKDDKHRTNHLLYGDPFKGQPFKLIPMDPKSE 518

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
             Y + R++DE HRFAIT HR+   K +  S LD I GIGP  +  LL+ FG++K I  +
Sbjct: 519 GFYLMTRIQDEVHRFAITFHRQTHAKNSLVSRLDSIKGIGPKSRTKLLREFGSLKKIKEA 578

Query: 585 SPETLASIEGISKKIACKIY 604
           S + L    G++   A  + 
Sbjct: 579 SIDDLRKA-GLTLTQAQAVK 597


>gi|328958170|ref|YP_004375556.1| UvrABC system protein C [Carnobacterium sp. 17-4]
 gi|328674494|gb|AEB30540.1| UvrABC system protein C [Carnobacterium sp. 17-4]
          Length = 569

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/604 (27%), Positives = 284/604 (47%), Gaps = 47/604 (7%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    ++Y+GKA +L+KR++SY     H  +   ++ +I +    +T T+ E LLLE 
Sbjct: 1   MKNKENEIIYIGKAKSLKKRVRSYFRGT-HEGKTQLLVEEIVDFETIITSTDKECLLLEI 59

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
            +IK+  P++NI L+   S+PY+ IT+  K P L    +     G YFGP+ +V A  +T
Sbjct: 60  TLIKKHLPKYNIKLKQGTSYPYLKITN-EKDPQLIITSEVKRDGGHYFGPYPNVYAASET 118

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
              +Q+ + LR C         R CL + + +C GPC  EI  E+Y   + + ++FL+G 
Sbjct: 119 QQFIQKVYPLRKCNGYQ----KRACLYYHLGQCIGPCDHEIPKEEYDAQIDKIRRFLNGD 174

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251
              +K+ +   M +A  +  +E A  +R+++  +       + I N     D FS Y NK
Sbjct: 175 VKEIKKILKSKMMKAAEELAFERAAEYRNQIQYIETTVERQNIITNDFTTRDVFSYYMNK 234

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--CPENILLSEEA 309
               IQ  F                    T  + L+ ++ QFY +     P  +L+    
Sbjct: 235 GWISIQVFFIRQATLIKREATIFPC--YDTPQEELASYIVQFYQEDNHLLPREVLVPNGV 292

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMI 365
           +  +L E+        ++ + VP QG K+ +++ A  N+              +      
Sbjct: 293 DTKTLSEVL-------EIPVKVPIQGRKKDMLDLATKNSEISLNEKFQLIEMDDRKTIGA 345

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           +K+ ++  +LP +  RIE +D+S+I G + V  MV   +    K+ YRK+ +    V   
Sbjct: 346 IKELSEALSLPLVS-RIEAFDHSNIQGTNPVSAMVSFLDGKPDKSNYRKYKIKS--VSGS 402

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS-AAQGVLK 484
           ++ A    V+ RR+++L+K    L              PD++++DGGK Q++ A   +  
Sbjct: 403 NELATTEEVIRRRYTRLLKEGRPL--------------PDLILMDGGKIQVNGAINILEN 448

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L +   I +  + K  K        F +  + + L       Y +QR++DE HRFAIT 
Sbjct: 449 ELGLS--IPVAGMVKDDKHRTSS-LIFGEDLQKVTLKPTSQAFYLVQRIQDEVHRFAITF 505

Query: 545 HRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR+ R K +  S LD I G+GP  +  +L+ F +VK +  +S E +  + GI  K A +I
Sbjct: 506 HRQLRGKNSLSSKLDRIEGVGPKTRTKILKHFKSVKNVKEASVEEINGL-GIPLKTAVRI 564

Query: 604 YNHF 607
               
Sbjct: 565 KEGL 568


>gi|227879074|ref|ZP_03996963.1| excision endonuclease subunit UvrC [Lactobacillus crispatus JV-V01]
 gi|256843063|ref|ZP_05548551.1| excinuclease ABC, C subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256850285|ref|ZP_05555714.1| excinuclease ABC subunit C [Lactobacillus crispatus MV-1A-US]
 gi|293381296|ref|ZP_06627299.1| excinuclease ABC subunit C [Lactobacillus crispatus 214-1]
 gi|227861315|gb|EEJ68945.1| excision endonuclease subunit UvrC [Lactobacillus crispatus JV-V01]
 gi|256614483|gb|EEU19684.1| excinuclease ABC, C subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256712922|gb|EEU27914.1| excinuclease ABC subunit C [Lactobacillus crispatus MV-1A-US]
 gi|290922112|gb|EFD99111.1| excinuclease ABC subunit C [Lactobacillus crispatus 214-1]
          Length = 600

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 176/622 (28%), Positives = 283/622 (45%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              T+ EA LLE  +IK+ +P +N+ L+    +PYI IT +H  P            G Y
Sbjct: 68  TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVHKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ F LR C         RPCL + + +C G C  ++  ++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E + + K FL+G   ++K+ +   M QA    ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKSFLNGDIASVKQSLTEKMAQAASNLEFERAAEIRDQLKYIEETVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             + D F+ Y +K+   +Q  F    +     T        +      + F+ QFY  + 
Sbjct: 243 NTQRDIFNYYVDKSWISVQIFFLRQAKLLRRETRMFPLTDATDPEDAFTSFIVQFYGQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ IL+ E  +  +L E+        KV +  P++G+K+ +++ A  NA      K 
Sbjct: 303 RVLPKEILIPEGFDNATLAEVL-------KVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HFIESFDHSHIQGADPVSALVVFKDGEPEKTAY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+ +L++  +                PD++++D
Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHK--------------RMPDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K  K       F     G     + LN +   
Sbjct: 461 GGQIQVDACLDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+R  K A  S LD I GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRVQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLREFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            + L    G++   A  +    
Sbjct: 580 IDDLRRA-GLTLTQAQTVKLTL 600


>gi|58337244|ref|YP_193829.1| excinuclease ABC subunit C [Lactobacillus acidophilus NCFM]
 gi|227903828|ref|ZP_04021633.1| excinuclease ABC subunit C [Lactobacillus acidophilus ATCC 4796]
 gi|75357715|sp|Q5FKH6|UVRC_LACAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|58254561|gb|AAV42798.1| excinuclease ABC subunit C [Lactobacillus acidophilus NCFM]
 gi|227868715|gb|EEJ76136.1| excinuclease ABC subunit C [Lactobacillus acidophilus ATCC 4796]
          Length = 600

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 173/619 (27%), Positives = 287/619 (46%), Gaps = 46/619 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              T+ EA LLE  +IK+ +P +N+ L+    +PYI IT +H  P            G Y
Sbjct: 68  TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSVVHKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +++ + LR C         RPCL + + +C G C  ++  ++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIRKVYPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E + + K FL+G   ++K+ +   M +A+   ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKSFLNGDITSVKQDLTTKMEKASENLEFERAAEIRDQLKYIEETVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             + D F+ Y +K+   IQ  F    +     T        +      + F+ QFY  K 
Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDAADPEDAFTSFIVQFYGQKN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ IL+    ++ +L E+         V +  P++G+K+ +++ A  NA      K 
Sbjct: 303 RILPKEILIPSGFDDDTLAEVL-------NVAVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HVIESFDHSHIQGADPVSALVVFKDGEPDKTSY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+ +L++  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A + VL+   +   I +  + K  K       F     G     + L+ +   
Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLDPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+R  K A  S LD I GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRNFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIY 604
            E L +  G++   A  + 
Sbjct: 580 IEDLRAA-GLTLPQAQTVK 597


>gi|323343707|ref|ZP_08083934.1| excinuclease ABC subunit C [Prevotella oralis ATCC 33269]
 gi|323095526|gb|EFZ38100.1| excinuclease ABC subunit C [Prevotella oralis ATCC 33269]
          Length = 615

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 173/623 (27%), Positives = 299/623 (47%), Gaps = 48/623 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA  L+ R+ SY H      +   ++S+I +I +TV  
Sbjct: 19  SMPEKPGSYQFYDENHHIIYVGKAKRLKTRVSSYFHKEVDRFKTKVLVSRIYDISYTVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE ++IK+  PR+N+LL+D K++P I IT+   +P ++K R  +   G+Y+GP
Sbjct: 79  TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-EYLPRIFKTRTINKRFGTYYGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179
           ++++ ++   +N + + +  R+C   + R     H+ + CL + I  C+ PC G+ S E+
Sbjct: 138 YSNLSSMNAVLNLINKLYKPRTCRFPITREGIENHKYKACLEYHIHNCNAPCIGKQSYEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E + +A++ L G    +   I + M +   +  +E A   + R   + +    ++ + 
Sbjct: 198 YQENIKQAREILKGNTREVSNYIFKLMQEKAAELKFEEAEALKQRYTLIENFVAKSEVVS 257

Query: 240 NRMDCFSLYHN-----KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             ++   ++       KN A I       G    + TF  K   +  N ++L   + +  
Sbjct: 258 YSINDVDVFTIVDDDLKNNAYINYIHVKNGTINQSFTFEYKRKLDENNKELLITAIPEIR 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     E  +                VP++G+K+ ++E + +N  +    
Sbjct: 318 ERFKSTAKEIIVPFEMEWKI----------KDATFFVPQRGDKKHLLELSEMNGKQYKFD 367

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     ++K+  +K  LP +P +IE +DNS+I G  AV   +V       
Sbjct: 368 RLKQSEKLNPEQKQTRLMKELQEKLNLPKLPYQIECFDNSNISGTDAVAGCIVFKGMKPS 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V   DD A M+ V+ RR++++ +                   PD++I
Sbjct: 428 KKDYRKYNIKT--VDGPDDYASMKEVVRRRYNRMKEEG--------------TPLPDLII 471

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V++   +  +I I  +AK        E  F    + + L     + +
Sbjct: 472 TDGGKGQMEVVREVVEDE-LGLQIPIAGLAKDDHHRT-NELLFGFPPQVIGLKTDSELFH 529

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            +  ++DE HRFAIT HR +R K A +S LD+I GIG   K  L+++F TVK +  +  +
Sbjct: 530 SLTHIQDEVHRFAITFHRDKRSKHALHSELDDIKGIGTKTKETLIKAFKTVKKVKATDIQ 589

Query: 588 TLASIEGISKKIACKIYNHFHKN 610
            L     I    A  IYNHFH +
Sbjct: 590 GLTK--EIGALKAKIIYNHFHPD 610


>gi|332704247|ref|ZP_08424335.1| UvrABC system protein C [Desulfovibrio africanus str. Walvis Bay]
 gi|332554396|gb|EGJ51440.1| UvrABC system protein C [Desulfovibrio africanus str. Walvis Bay]
          Length = 604

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 179/616 (29%), Positives = 286/616 (46%), Gaps = 33/616 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
            S+   + PGVY M +  GR+LYVGKA  L+KR+ SY  S+   T +   ++++I  I  
Sbjct: 5   ESKAFSQEPGVYLMKNAQGRILYVGKAKCLRKRLASYFRSSSGLTPKTQSLVARIERIDT 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T TE EALLLE ++IK+ +PR+N+LLRDDK +    +      P L   R  +     
Sbjct: 65  LITATEKEALLLEESLIKKHRPRYNVLLRDDKQYVLFRLDRHKDFPRLVMTRKVTRDGSI 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF S  A  +T   + + F LR C D VF +R RPCL + I RC GPC  E+   +Y
Sbjct: 125 YYGPFTSSVAARETWKVINKVFPLRKCGDHVFANRVRPCLNYHIGRCLGPCVNEVDKGEY 184

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              V + +  LSG +  L   +   M  A+   D+E A + RD+ AA+         +  
Sbjct: 185 RRLVMQIEMLLSGRSGELMANLEAEMRAASDNLDFERAAVLRDQAAAVRRTVERQTVVLP 244

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
               MD  +L    +   +   F   G+  G  +FF          ++++ FL Q+YT  
Sbjct: 245 EERDMDVMALAPTGSGLSLGLLFIRQGRLLGHKSFFFSGMELEDGPEVVASFLAQYYTPA 304

Query: 298 PCPENILLSEEAEETSLLEISFF--KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               + ++           +     ++ G  V +  P+   ++++I+ A  NA  S    
Sbjct: 305 RFIPSRIVMPFPPSEEEDGVVQLLVERRGGLVILAEPRSLAEKELIDTAKRNALESIRSA 364

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
               ++     +   +K  L   P+RIE  D SH+ G       +V  +   +K+ YR +
Sbjct: 365 ERQPMT-----ELLGRKLGLAIEPRRIECVDVSHLGGEGMRVGQIVYMDGEPLKDAYRTY 419

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           +L   +    D  A                   L    K++  S   WPD+V++DGG+GQ
Sbjct: 420 SLPELEGTADDYLA-------------------LASWAKRRVESGEPWPDLVLIDGGRGQ 460

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGME--KFFVKKGEALVLNMRDPILYFIQRL 533
           L+A +  L +    N   + SIAK  +R+  +E   F   +   L L    P L F+QRL
Sbjct: 461 LAAVERALGEAGQPNLFELASIAKAGRRAGELEDLIFRPGRKNPLPLKPGSPELLFLQRL 520

Query: 534 RDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RD AH + +   R+ R++    S L  +  IGP   RLL + F +V  +  ++P+ + SI
Sbjct: 521 RDAAHNYVLGRQRQGRRRQVLQSELLSLPSIGPKTARLLWERFDSVDAMLAAAPDEIKSI 580

Query: 593 EGISKKIACKIYNHFH 608
            G+  K A +I    +
Sbjct: 581 PGLGGKRAERILASLN 596


>gi|310778228|ref|YP_003966561.1| Excinuclease ABC subunit C [Ilyobacter polytropus DSM 2926]
 gi|309747551|gb|ADO82213.1| Excinuclease ABC subunit C [Ilyobacter polytropus DSM 2926]
          Length = 600

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 185/625 (29%), Positives = 302/625 (48%), Gaps = 39/625 (6%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +PE PGVY M     +V+YVGKA NL+KR+ SY +  +   +   ++  I ++ F
Sbjct: 3   IKKIDIPENPGVYLMK-KGDKVIYVGKAKNLKKRVSSYFNREHIDEKTRELVKNIESLDF 61

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---I 117
            +  +E++AL+LE N+IKR  P++NI L+D+K++PYI  T K   P +   R + +    
Sbjct: 62  IICNSELDALVLENNLIKRYSPKYNISLKDEKTYPYIKFT-KEDYPKITIIRTTKSLDTE 120

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
            G YFGP+           +L + F +R C   + +   RPCL + +  C+GPC  +   
Sbjct: 121 SGYYFGPYP--YGCRNLKKTLIKIFKIRDCKRDMSKKYDRPCLKYFMNLCTGPCVYKDVM 178

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            +Y E V  AKK L G    +       M +A+ +  +E AI++R++L  L + +    +
Sbjct: 179 HEYRENVENAKKLLKGRGKEVIAHQKAKMEKASEELRFEEAILYRNQLKELENAEKSQVA 238

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
            Y+     D F          +       G+     +       +  +  +    +  +Y
Sbjct: 239 EYDKAVDEDLFVFSIEGERLFLCVLNMRDGKILEKKSSGTDLKGKVFDN-LFQEVVTDYY 297

Query: 295 TDKPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRK-IIEQALINAHRSH 352
           +    P+NI+  +E  E + ++      + G K+ +  PK   +R  +++ AL+N +R  
Sbjct: 298 SKHSIPKNIVFQKENEENSEIVGKWLTLKSGKKIDLYFPKVKSRRMDLLDMALLNLNRDI 357

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
               + +   +  L        L  IP+RIE +D S+I G  AV  M V  E    K +Y
Sbjct: 358 ESYFTRKNVLEEGLMSLYSILELKKIPRRIECFDISNIQGKDAVASMSVAIEGKLSKKEY 417

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RKF +   D    DD  MMR V ERR+S+L ++E                 PD++++DGG
Sbjct: 418 RKFKIKSKDTP--DDFQMMREVAERRYSKLKEHE----------------LPDLILIDGG 459

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
            GQL +   +LKKL     + IISIAK  +     E F + +    +    +  L  +QR
Sbjct: 460 LGQLGSVGNILKKLKKSEFLDIISIAKREE-----EIFKLGETTPYIFPKSEESLKILQR 514

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           LRDEAHRF ++ HRK R K    S LD I GIGP RK  LL+ FG+V  I ++  + L +
Sbjct: 515 LRDEAHRFGVSYHRKLRSKRVLASELDSIEGIGPKRKEALLKKFGSVSGIKKAGEDELCT 574

Query: 592 IEGISKKIACKIYNHFHKNTSHTPT 616
           +  +S+ +A ++    + +     T
Sbjct: 575 V--LSEALAKRVIRGLNDDGKKKDT 597


>gi|325125554|gb|ADY84884.1| Excinuclease ABC subunit C [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 600

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 175/620 (28%), Positives = 284/620 (45%), Gaps = 48/620 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE  G Y M D+ G+V+YVGK+ NL+ R++SY  S+    R   ++  I +    
Sbjct: 9   KLKLLPEKAGCYLMKDVNGKVIYVGKSKNLKNRVRSYFKSSQEGRR-AELVKNIADYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L+    +PYI IT+  K P           +G Y
Sbjct: 68  VVDSDKEAFLLEVTLIKKYQPYYNVALKSGTGYPYIEITN-EKNPKTRLTSIVYKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A   T+  +Q+ F LR C+        RPCL + + +C G C  E+   +Y 
Sbjct: 127 FGPYPNVYAASATLKFIQKVFPLRRCSGYT----GRPCLYYHMGQCLGSCFKEVPQSEYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E + + K+FL+G    +K+ +   M QA+   ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKRFLNGDIQEVKKDLTNKMLQASADLEFERAGELRDQLKYIEETVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +++   IQ  F    +     +       E+        F+ QFY  K 
Sbjct: 243 HTQRDIFNYYVDRSWISIQVFFLRQAKLLRRESHMFPLTDETDPEDEFMSFIAQFYAQKN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  +L+ +  ++  L      K          P++G+K  ++E A  NA      K 
Sbjct: 303 RVNPREVLVPKGIDQDELAAAIGIKVRT-------PQRGQKASLMEMARENAQLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                 +   +   ++  K   LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGQRKTKGAQEEIFKALGLPYGSY-IESFDHSHIQGADPVSALVVFKDGEPFKTGY 414

Query: 413 RKFNLHPNDVKTQ--DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+L+K  E                PD++++D
Sbjct: 415 RKFKLKGEVEHQNSADEVGNTREVVRRRYSRLLKEHE--------------RMPDLILMD 460

Query: 471 GGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDP 525
           GG+ Q+ A + V   +LN++  I +  + K  K       +    KG+   L   + +  
Sbjct: 461 GGQIQVEACEDVLRNELNLD--IPVAGMVKDDKHRTNHLLYGDPFKGQPFKLIPMDPKSE 518

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
             Y + R++DE HRFAIT HR+   K +  S LD I GIGP  +  LL+ FG++K I  +
Sbjct: 519 GFYLMTRIQDEVHRFAITFHRQTHAKNSLVSRLDSIKGIGPKSRTKLLREFGSLKKIKEA 578

Query: 585 SPETLASIEGISKKIACKIY 604
           S + L    G++   A  + 
Sbjct: 579 SIDDLRKA-GLTLTQAQAVK 597


>gi|326803008|ref|YP_004320826.1| excinuclease ABC, C subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650857|gb|AEA01040.1| excinuclease ABC, C subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 606

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/613 (26%), Positives = 294/613 (47%), Gaps = 42/613 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PG Y M D    ++Y+GKA NL  R+ SY   + HT +   ++++I +    
Sbjct: 9   KLKLVPKKPGCYIMKDRNQHIIYIGKAKNLFNRVHSYFR-SQHTGKTAQLVAEIADFEVI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T T  E+LLLE N+IK+ KP +NI+L+    +PY+ IT++   P L    D     G Y
Sbjct: 68  MTNTNKESLLLEINLIKKYKPHYNIMLKYGTMYPYLKITNEED-PQLIITSDVKKDGGKY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V+A   T + LQ+T+ LR C     ++  R C  + + +C G C  E+S+++Y 
Sbjct: 127 FGPYPNVNAATSTRDLLQKTYPLRKCG----KNEKRACFYYHLGQCIGCCDHEVSAQEYA 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           + +    +FL+G    +K  +   M  A+    YE A  +RD++  +       + +   
Sbjct: 183 QQIKRITRFLNGDVQTIKNDLQNKMATASENMHYERAAEYRDQINYIEQTVEPQNVMSKQ 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
           YN  D F+ Y+N     IQ             +      ++                +  
Sbjct: 243 YNNRDVFAYYYNHGWISIQVFLLRQFSIIKRDSALFACYNDPAEELTSYIVQFYQEQNHT 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL-- 356
            P+ +L+ E  +   L +         ++ +  PK+G+KR +++ A  NA  +H QK   
Sbjct: 303 LPKEVLVPENIDTHLLSDAL-------EISVVNPKRGDKRHMLDLATENAQLAHEQKFRL 355

Query: 357 --STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               E   +  +++ +    LP++  R+E +D S+I G   V  MVV  +    K  YRK
Sbjct: 356 LEMNEKKTRGAVEELSDALNLPYLR-RMESFDFSNISGVDNVCGMVVYEDGRPNKKAYRK 414

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +     +  ++    + V+ RR+S+L+K  ++L              PD+V++DGG  
Sbjct: 415 FKIKS--FQGANEYQATQEVIRRRYSRLLKEGKDL--------------PDIVLMDGGSI 458

Query: 475 QLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
           +++AA+ V + +L +++ + +  + K  K        +      + L+ +    + +QR+
Sbjct: 459 EVNAARDVLVNELGLDD-LPVAGMVKDDKHRTSH-LIYGDDHAIVPLDPKSQAFHLVQRI 516

Query: 534 RDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           + E  R+A T HR+   K +  S LD + G+GP  +R +L  F T+K I ++    +  +
Sbjct: 517 QIEVDRYAKTFHRQVHHKNSFQSRLDSVKGVGPKTRRKVLSHFKTIKAIRQADLSEIQGL 576

Query: 593 EGISKKIACKIYN 605
            GIS+++A  I+ 
Sbjct: 577 -GISEQVAESIHR 588


>gi|313123507|ref|YP_004033766.1| excision endonuclease subunit uvrc [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280070|gb|ADQ60789.1| Excision endonuclease subunit UvrC [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 600

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 176/620 (28%), Positives = 284/620 (45%), Gaps = 48/620 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE  G Y M D+ G+V+YVGK+ NL+ R++SY  S+    R   ++  I +    
Sbjct: 9   KLKLLPEKAGCYLMKDVKGKVIYVGKSKNLKNRVRSYFKSSQEGRR-AELVKNIADYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L+    +PYI IT+  K P           +G Y
Sbjct: 68  VVDSDKEAFLLEVTLIKKYQPYYNVALKSGTGYPYIEITN-EKNPQTRLTSIVYKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A   T+  +Q+ F LR C+        RPCL + + +C G C  E+   KY 
Sbjct: 127 FGPYPNVYAASATLKFIQKVFPLRRCSGYT----GRPCLYYHMGQCLGSCFKEVPQSKYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E + + K+FL+G    +K+ +   M QA+   ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKRFLNGDIQEVKKDLTNKMLQASADLEFERAGELRDQLKYIEETVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +++   IQ  F    +     +       E+        F+ QFY  K 
Sbjct: 243 HTQRDIFNYYVDRSWISIQVFFLRQAKLLRRESHMFPLTDETDPEDEFMSFIAQFYAQKN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  +L+ +  ++  L      K          P++G+K  ++E A  NA      K 
Sbjct: 303 RVKPREVLVPKGIDQDELAAAIGIKVRT-------PQRGQKASLMEMARENAQLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                 +   +   ++  K   LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGQRKTKGAQEEIFKALGLPYGSY-IESFDHSHIQGADPVSALVVFKDGEPFKTGY 414

Query: 413 RKFNLHPNDVKTQ--DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+L+K  E                PD++++D
Sbjct: 415 RKFKLKGEVEHQNSADEVGNTREVVRRRYSRLLKEHE--------------RMPDLILMD 460

Query: 471 GGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDP 525
           GG+ Q+ A + V   +LN++  I +  + K  K       +    KG+   L   + +  
Sbjct: 461 GGQIQVEACEDVLRNELNLD--IPVAGMVKDDKHRTNHLLYGDPFKGQPFKLIPMDPKSE 518

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
             Y + R++DE HRFAIT HR+   K +  S LD I GIGP  +  LL+ FG++K I  +
Sbjct: 519 GFYLMTRIQDEVHRFAITFHRQTHAKNSLVSRLDSIKGIGPKSRTKLLREFGSLKKIKEA 578

Query: 585 SPETLASIEGISKKIACKIY 604
           S + L    G++   A  + 
Sbjct: 579 SIDDLRKA-GLTLTQAQAVK 597


>gi|325684266|gb|EGD26439.1| excinuclease ABC subunit C [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 607

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 175/620 (28%), Positives = 285/620 (45%), Gaps = 48/620 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE  G Y M D+ G+V+YVGK+ NL+ R++SY  S+    R   ++  I +    
Sbjct: 16  KLKLLPEKAGCYLMKDVKGKVIYVGKSKNLKNRVRSYFKSSQEGRR-AELVKNIADYDII 74

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L+    +PYI IT+  K P           +G Y
Sbjct: 75  VVDSDKEAFLLEVTLIKKYQPYYNVALKSGTGYPYIEITN-EKNPQTRLTSIVYKDKGYY 133

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A   T+  +Q+ F LR C+        RPCL + + +C G C  E+   +Y 
Sbjct: 134 FGPYPNVYAASATLKFIQKVFPLRRCSGYT----GRPCLYYHMGQCLGSCFKEVPQSEYD 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E + + K+FL+G    +K+ +   M QA+   ++E A   RD+L  +         I N 
Sbjct: 190 EQIKKIKRFLNGDIQEVKKDLTNKMLQASADLEFERAGELRDQLKYIEETVEKQKIISND 249

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +++   IQ  F    +     +       E+        F+ QFY  K 
Sbjct: 250 HTQRDIFNYYVDRSWISIQVFFLRQAKLLRRESHMFPLTDETDPEDEFMSFIAQFYAQKN 309

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  +L+ +  ++  L      K          P++G+K  ++E A  NA      K 
Sbjct: 310 RVKPREVLVPKGIDQDELAAAIGIKVRT-------PQRGQKASLMEMARENAQLKLDDKF 362

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                 +   +   ++  K   LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 363 RLLELGQRKTKGAQEEIFKALGLPYGSY-IESFDHSHIQGADPVSALVVFKDGEPFKTGY 421

Query: 413 RKFNLHPNDVKTQ--DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L       +  D+    R V+ RR+S+L+K  E                PD++++D
Sbjct: 422 RKFKLKGEVEHQKSADEVGNTREVVRRRYSRLLKEHE--------------RMPDLILMD 467

Query: 471 GGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDP 525
           GG+ Q+ A + V   +LN++  I +  + K  K       +    KG+   L   + +  
Sbjct: 468 GGQIQVEACEDVLRNELNLD--IPVAGMVKDDKHRTNHLLYGDPFKGQPFKLIPMDPKSE 525

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
             Y + R++DE HRFAIT HR+   K +  S LD I GIGP  +  LL+ FG++K I  +
Sbjct: 526 GFYLMTRIQDEVHRFAITFHRQTHAKNSLVSRLDSIKGIGPKSRTKLLREFGSLKKIKEA 585

Query: 585 SPETLASIEGISKKIACKIY 604
           S + L    G++   A  + 
Sbjct: 586 SIDDLRKA-GLTLTQAQAVK 604


>gi|282932489|ref|ZP_06337914.1| excinuclease ABC, C subunit [Lactobacillus jensenii 208-1]
 gi|281303438|gb|EFA95615.1| excinuclease ABC, C subunit [Lactobacillus jensenii 208-1]
          Length = 607

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 173/622 (27%), Positives = 277/622 (44%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M +I G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 16  KLKLLPEQPGCYLMKNINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVKEIADFDII 74

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              ++ E+ LLE  +IK+ +P +N+ L+    +PYI IT+  K P            G Y
Sbjct: 75  TVTSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-EKDPQTRLTSIVHKDNGYY 133

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+     H+ RPCL + + +C G C  E+   KY 
Sbjct: 134 FGPYPNVYAAQATLRFIQKVWPLRRCSG----HQGRPCLYYHMGQCLGACFQEVPRSKYE 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             + + K+FL+G    +K+++   M  A+   ++E A   RD+L  +         I N 
Sbjct: 190 AQIAKIKRFLNGDIGQVKQELTEKMQLASSNLEFERAAEIRDQLRYIEQTVEKQKIISND 249

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +K+   +Q  F    +     T        S        F+ QFY  K 
Sbjct: 250 HTQRDIFNFYVDKSWISVQIFFLRQAKLLRRETKMFPLMDLSEPKDEFMSFIVQFYNQKN 309

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P+ IL+ +  +  +L E+   K          P++G KR +++ A  NA        
Sbjct: 310 RILPKEILVPKGLDNDNLSEVLGVKVRT-------PQRGTKRDLLKMAKDNAKLKLDEKF 362

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +    +  K   LP+    IE +D+SHI G   V   VV  +    K  Y
Sbjct: 363 RLLELGNRKTKGAQAEIFKALGLPYGS-IIESFDHSHIQGTDPVSACVVFKDGEPFKTAY 421

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+S+++K                   PD++++D
Sbjct: 422 RKYKLKGEVEHQNGADEVGNTREVVRRRYSRMLKEH--------------TRLPDLILMD 467

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K          F     G+ L L   N +   
Sbjct: 468 GGQIQVDACLDVLRN-ELNCDIPVAGMVKDNHHHTNHLIFGDPINGKPLELIPMNPKSEG 526

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K +  S LD I GIGP  +  LL+ FG++K I  +S
Sbjct: 527 FYLMTRIQDEVHRFAITFHRQTHAKNSLSSKLDGIKGIGPKSRNKLLKKFGSLKKIKDAS 586

Query: 586 PETLASIEGISKKIACKIYNHF 607
            E L    G++   A  +    
Sbjct: 587 IEELQDA-GLTLPQAQSVKLTL 607


>gi|238855217|ref|ZP_04645536.1| excinuclease ABC subunit C [Lactobacillus jensenii 269-3]
 gi|260664580|ref|ZP_05865432.1| excinuclease ABC, C subunit [Lactobacillus jensenii SJ-7A-US]
 gi|238832109|gb|EEQ24427.1| excinuclease ABC subunit C [Lactobacillus jensenii 269-3]
 gi|260561645|gb|EEX27617.1| excinuclease ABC, C subunit [Lactobacillus jensenii SJ-7A-US]
          Length = 600

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 173/622 (27%), Positives = 277/622 (44%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M +I G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPEQPGCYLMKNINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVKEIADFDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              ++ E+ LLE  +IK+ +P +N+ L+    +PYI IT+  K P            G Y
Sbjct: 68  TVTSDKESFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-EKDPQTRLTSIVHKDNGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+     H+ RPCL + + +C G C  E+   KY 
Sbjct: 127 FGPYPNVYAAQATLRFIQKVWPLRRCSG----HQGRPCLYYHMGQCLGACFQEVPRSKYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             + + K+FL+G    +K+++   M  A+   ++E A   RD+L  +         I N 
Sbjct: 183 AQIAKIKRFLNGDIGQVKQELTEKMQLASSNLEFERAAEIRDQLRYIEQTVEKQKIISND 242

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ Y +K+   +Q  F    +     T        S        F+ QFY  K 
Sbjct: 243 HTQRDIFNFYVDKSWISVQIFFLRQAKLLRRETKMFPLMDLSEPKDEFMSFIVQFYNQKN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
              P+ IL+ +  +  +L E+   K          P++G KR +++ A  NA        
Sbjct: 303 RILPKEILVPKGLDNDNLSEVLGVKVRT-------PQRGTKRDLLKMAKDNAKLKLDEKF 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +    +  K   LP+    IE +D+SHI G   V   VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQAEIFKALGLPYGS-IIESFDHSHIQGTDPVSACVVFKDGEPFKTAY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+S+++K                   PD++++D
Sbjct: 415 RKYKLKGEVEHQNGADEVGNTREVVRRRYSRMLKEH--------------TRLPDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDPI 526
           GG+ Q+ A   VL+   +   I +  + K          F     G+ L L   N +   
Sbjct: 461 GGQIQVDACLDVLRN-ELNCDIPVAGMVKDNHHHTNHLIFGDPINGKPLELIPMNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K +  S LD I GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRQTHAKNSLSSKLDGIKGIGPKSRNKLLKKFGSLKKIKDAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            E L    G++   A  +    
Sbjct: 580 IEELQDA-GLTLPQAQSVKLTL 600


>gi|260101651|ref|ZP_05751888.1| excision endonuclease subunit UvrC [Lactobacillus helveticus DSM
           20075]
 gi|260084552|gb|EEW68672.1| excision endonuclease subunit UvrC [Lactobacillus helveticus DSM
           20075]
          Length = 600

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 174/619 (28%), Positives = 287/619 (46%), Gaps = 46/619 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M DI G V+YVGK+ NL+ R++SY   +    R   ++ +I +    
Sbjct: 9   KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYF-KSMQVGRRAELVREIRDYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              T+ EA LLE  +IK+ +P +N+ L+    +PYI IT +H  P            G Y
Sbjct: 68  TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHD-PQTRLTSIVCKDVGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ F LR C         RPCL + + +C G C  ++  ++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E + + K+FL+G    +K+ + + M QA+ + ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKRFLNGDIGAVKQDLTQKMEQASEQLEFERAAEIRDQLKYIEETVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             + D F+ Y +K+   IQ  F    +     T        +      + F+ QFY  K 
Sbjct: 243 NTQRDIFNYYVDKSWISIQIFFLRQAKLLRRETRMFPLTDTTDPEDAFTSFIVQFYGQKN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ +L+    +  +L E+         V +  P++G+K+ +++ A  NA      K 
Sbjct: 303 RVLPKEVLIPAGFDNDTLAEVL-------TVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGEPDKTSY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+ +L++  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GG+ Q+ A + VL+   +   I +  + K  K       F     G     + LN +   
Sbjct: 461 GGQIQVDACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGVPLKLIPLNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+R  K A  S LD I GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLRKFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIY 604
            + L +  G++   A  + 
Sbjct: 580 VDDLRAA-GLTLPQAQTVK 597


>gi|29840587|ref|NP_829693.1| excinuclease ABC subunit C [Chlamydophila caviae GPIC]
 gi|33301870|sp|Q821V5|UVRC_CHLCV RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|29834937|gb|AAP05571.1| excinuclease ABC, subunit C [Chlamydophila caviae GPIC]
          Length = 605

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 180/617 (29%), Positives = 296/617 (47%), Gaps = 43/617 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            + +P  PGVY M D +G VLY+GKA NL+ RI +Y      +  RI  ++ +   I   
Sbjct: 8   PKLVPTSPGVYLMKDDSGEVLYIGKAKNLRNRITTYFQKQGDSRERIPFLMKKTTTIETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118
           +   E EALLLE N+IK+  P++N+LL+DDK+F  + I+  H  P +   R     S+ +
Sbjct: 68  LVSNETEALLLENNLIKKHHPKYNVLLKDDKTFFCLAISLTHPWPKIDAIRTKAITSSKR 127

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
              FGP+ S +A    +  + + F LR+C++  F  R RPC+L+++KRC  PC    + E
Sbjct: 128 QIIFGPYVSAEACRTLLEVISQWFPLRTCSNREFASRRRPCILYEMKRCLAPCVHLCTHE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y E + +A  FL G    + + + +++ +A+ ++ +E A I+   L  +          
Sbjct: 188 EYEETLEKAVLFLKGKVSEIIQDLEKSIEKASQEQKFEQAGIYYRTLKLIQQAMEKQHVE 247

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +  +D   LY       I       G+  G   F    +++     + S+ L+ +  
Sbjct: 248 KFHFQNIDAIGLYRKYQETVITVLTVRSGKLLGARHFPFSENAQEDTDLLSSFILQYYAN 307

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ IL         L    +        ++  PK G  ++++  A  NA       
Sbjct: 308 QPQTPKEILTPIPLNIPELP---YLLNKDTPPQLRSPKTGYGKELLTLAKNNAK---VHA 361

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            +T  S  +  ++  K    P  P RIE YDN+H+ G   VG  +V   + F    YR F
Sbjct: 362 ETTTQSSSLPYEEMKKILKSPDYPYRIECYDNAHLQGSHGVGVYIVYENDAFSPKSYRTF 421

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           ++        +D A    VL RRFS L                   S PD++++DGG+ Q
Sbjct: 422 SISS---LAHNDLATFHEVLSRRFSSLT-----------------SSLPDMIVIDGGRAQ 461

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSA---GMEKFFVKK-GEALVLNMRDPILYFIQ 531
            S A+  LK+LN+   I ++S+AK     +     EK F     + + L     +L F Q
Sbjct: 462 YSQAKKTLKELNLTG-IQVVSLAKEASNHSSSLRNEKLFCDTFPQGIQLAPTSKLLQFFQ 520

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +LRDEAHRFAI+ HR++R K    P ++I GIG ++++ LLQ F + K + ++S   L +
Sbjct: 521 KLRDEAHRFAISKHRRKRYKDLLFPQEKIPGIGEVKRKRLLQKFKSWKQVMKASQGELEA 580

Query: 592 IEGISKK-----IACKI 603
           I G++KK     +A ++
Sbjct: 581 IPGLTKKDIQQLLAKQV 597


>gi|225018481|ref|ZP_03707673.1| hypothetical protein CLOSTMETH_02428 [Clostridium methylpentosum
           DSM 5476]
 gi|224948752|gb|EEG29961.1| hypothetical protein CLOSTMETH_02428 [Clostridium methylpentosum
           DSM 5476]
          Length = 609

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 174/618 (28%), Positives = 304/618 (49%), Gaps = 30/618 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60
            +  + + PGVY M D  G V+YVGKA  L+ R+ SY  +N+ H  ++  M+S + +  F
Sbjct: 10  KARNLTDMPGVYLMKDNTGEVIYVGKAKVLKNRVSSYFRNNSSHNEKVRKMVSNVEDFDF 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E EAL+LE ++IK+  P++NILL+DDK + YI ++     P +    +   +   
Sbjct: 70  IVTNSEFEALVLECSLIKQYNPKYNILLKDDKGYHYIKVS-DDIFPRI--TAEKQKVGSG 126

Query: 121 YF-GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEIS 176
            F GP+ S  AV + ++   R F L +C       +   +RPCL + IK+C G CTG+IS
Sbjct: 127 IFVGPYTSSFAVRQAVDEANRVFMLPTCNRKFNGRKLRNSRPCLNYYIKQCMGACTGKIS 186

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            + Y + + +A  ++ GG+    E++ R M +A  + D+E A+  R+R+ A+  +     
Sbjct: 187 RDDYNDLIKQAMDYIKGGSTQSVEQLTRQMEEAADRLDFEKAMELRNRIKAIQKVAESQK 246

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            I +     D  ++  N  + C     F  G+      + +K   +    ++ S FL ++
Sbjct: 247 IILDEHKNLDVIAMAQNGLVVCFVILKFREGRLVDKVDYTIKEVYD--PIEVRSDFLARY 304

Query: 294 YT-DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
           Y+  +  P+ + + E+  +T+LL     K  G+KV +  P++GE +++I+ A+ NA    
Sbjct: 305 YSTTQDIPKVVEIDEQGLDTALLSEYLTKLAGHKVTLFAPQRGEGKRLIQMAMNNAAEQL 364

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
           + K+         L + T+   L   P+ IE YD S++     VG MVV       K+ Y
Sbjct: 365 SYKVKRTGREVAALDELTRLLGLSRTPEYIEAYDISNLGDSGIVGGMVVFENGTPKKSAY 424

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           +KF +   D   +DD A MR +L RR S+  + +E            F   PD+++LDGG
Sbjct: 425 KKFAIKSTDT--RDDYASMREMLSRRLSRYKEEQE--------TGEGFGRLPDLILLDGG 474

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           KG ++A   V+    +E  I    + K  +          ++G  + ++        + R
Sbjct: 475 KGHVAAVGEVIDSFGLE--IPYFGMVKDDRHRTRA---IARQGGEIAISTFKSAFSLVTR 529

Query: 533 LRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++DE HR+ I+  RK  KK  +   L +I GIG  +   L + F T     ++  + +A 
Sbjct: 530 IQDEVHRYTISYQRKVHKKTTFELELTKIKGIGEKKALALFRHFKTKTAFRQADVDEIAK 589

Query: 592 IEGISKKIACKIYNHFHK 609
           +  I+ + A +I    + 
Sbjct: 590 VGKITTEKAKEIQQFMNN 607


>gi|261878877|ref|ZP_06005304.1| excision endonuclease subunit UvrC [Prevotella bergensis DSM 17361]
 gi|270334517|gb|EFA45303.1| excision endonuclease subunit UvrC [Prevotella bergensis DSM 17361]
          Length = 618

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 178/623 (28%), Positives = 301/623 (48%), Gaps = 48/623 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            MPE PG YQ  D    ++YVGKA  L+ R+ +Y H      +   ++S+I++I +TV  
Sbjct: 19  SMPERPGSYQFYDKEHHIIYVGKAKKLKSRVSTYFHKEVDRFKTKVLVSKIHDITYTVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E +ALLLE ++IK+  PR+N+LL+D K++P I IT+    P +YK R  +   G+YFGP
Sbjct: 79  SEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICITN-EYYPRIYKTRTINRKHGTYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR-----HRTRPCLLFQIKRCSGPCTGEISSEK 179
           +  V ++   ++ + + F  R C   + +     ++ RPCL + I  C G C G+ S E+
Sbjct: 138 YPHVASMYNILSLINKVFKPRRCRQPITKEGVAQNKYRPCLDYHIHNCKGCCIGKQSHEE 197

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           YME + +AK+ L G    L + + + M Q   +  +E A   + R   L      ++ + 
Sbjct: 198 YMENIRQAKEVLKGNTRQLSDWLYQKMMQKAEEMKFEEAEELKQRYIMLKDFVAKSEVVS 257

Query: 240 NRMDCFSLYHN-----KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             ++   ++       K  A I       G    + TF  K   + T+  +L   + +  
Sbjct: 258 YTINDVDVFTITEDELKKNAFINYIHVKNGTISQSFTFEYKRKLDETHEDLLIQAIPEIR 317

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                    ++     E  L             +  +P++G+K+ ++E + +N  +    
Sbjct: 318 ARFNSKAKEVIVPFEMEWKL----------KDAEFFIPQRGDKKHLLELSEMNGKQYKFD 367

Query: 355 KLST------EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           +L        E     ++K+   K  LP +P  IE +DNS+I G  AV   VV       
Sbjct: 368 RLKQAEKLNPEQKQTRLMKELQLKLGLPTLPYHIECFDNSNISGTDAVAGCVVYKGMKPS 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YRK+N+    V   DD A M+ V+ RR+S+++K   +L              PD++I
Sbjct: 428 KKDYRKYNIKT--VVGPDDYASMQEVVRRRYSRMMKEGTSL--------------PDLII 471

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
            DGGKGQ+   + V++   ++  I I  +AK  +     E       + + L     +  
Sbjct: 472 TDGGKGQMEVVREVVEDE-LKLSIPIAGLAKDDRHRT-NELLHGFPPQVIGLKTDTELFR 529

Query: 529 FIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + +++DE HR+AI+ HR +R K A +S LD I GIGP  K  +L++F +V  I  + P+
Sbjct: 530 VLTQIQDEVHRYAISFHRDKRSKHALHSELDNIKGIGPKTKEKILKAFKSVNNIKVAPPD 589

Query: 588 TLASIEGISKKIACKIYNHFHKN 610
            LA+I G +K  A  +  +F K+
Sbjct: 590 ELATIIGSNK--AKIVTEYFEKS 610


>gi|262046036|ref|ZP_06019000.1| excinuclease ABC, C subunit [Lactobacillus crispatus MV-3A-US]
 gi|260573995|gb|EEX30551.1| excinuclease ABC, C subunit [Lactobacillus crispatus MV-3A-US]
          Length = 600

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 176/622 (28%), Positives = 283/622 (45%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKLLPEKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              T+ EA LLE  +IK+ +P +N+ L+    +PYI IT +H +             G Y
Sbjct: 68  TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITREHDL-QTRLTSIVHKDGGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ F LR C         RPCL + + +C G C  ++  ++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCHGYQ----GRPCLYYHMGQCLGACFKKVPQKEYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E + + K FL+G   ++K+ +   M QA    ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKSFLNGDIASVKQSLTEKMAQAASNLEFERAAEIRDQLKYIEETVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             + D F+ Y +K+   +Q  F    +     T        +      + F+ QFY  + 
Sbjct: 243 NTQRDIFNYYVDKSWISVQIFFLRQAKLLRRETRMFPLTDATDPEDAFTSFIVQFYEQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ IL+ E  +  +L E+        KV +  P++G+K+ +++ A  NA      K 
Sbjct: 303 RVLPKEILIPEGFDNATLAEVL-------KVPVRTPQRGQKKSLLDMAKDNAKLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQKEIFDALGLPYG-HFIESFDHSHIQGADPVSALVVFKDGEPEKTAY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+ +L++  +                PD++++D
Sbjct: 415 RKYKLKGEVEHQNGGDEVRNTREVVRRRYGRLLREHK--------------RMPDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEA---LVLNMRDPI 526
           GGK Q+ A   VL+   +   I +  + K  K       F     G     + LN +   
Sbjct: 461 GGKIQVDACLDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGIPLKLIPLNPKSEG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+R  K A  S LD I GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRRHAKNALSSRLDSIKGIGPKSRNKLLREFGSLKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            + L    G++   A  +    
Sbjct: 580 IDDLRRA-GLTLTQAQTVKLTL 600


>gi|312871397|ref|ZP_07731492.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 3008A-a]
 gi|312872312|ref|ZP_07732382.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311092135|gb|EFQ50509.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311093050|gb|EFQ51399.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 605

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 167/627 (26%), Positives = 292/627 (46%), Gaps = 46/627 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY  S     R   ++  IN+    
Sbjct: 9   KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L++   +P+I IT+  + P +         +G Y
Sbjct: 68  VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+  +     RPCL + + +C G C  ++SS+KY 
Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKKVSSDKYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + + K FL+G     K ++ + M  A+   ++E A  +RD+L+ +         + + 
Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296
             + D F+ Y ++    IQ  F    +     T                 F+ QFY   +
Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
           +  P  IL+ +    +SL  +   +          P +G+K+ +++ A  N+        
Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKI 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                  +  +   ++      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+++K                   P+++++D
Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526
           GGK Q+ A   VL+   +   I +  + K          F      ++   + L+ +   
Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y I R++DE HRFAIT HR    K +  S LDEI GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579

Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612
            E L  + G++   A  +      + +
Sbjct: 580 IEDLKGV-GLTLTQAQSVKLVLENSQN 605


>gi|325912813|ref|ZP_08175191.1| excinuclease ABC, C subunit [Lactobacillus iners UPII 60-B]
 gi|325477806|gb|EGC80940.1| excinuclease ABC, C subunit [Lactobacillus iners UPII 60-B]
          Length = 605

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 292/627 (46%), Gaps = 46/627 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY  S     R   ++  IN+    
Sbjct: 9   KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L++   +P+I IT+  K P +         +G Y
Sbjct: 68  VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-EKDPEVKLTSIIKKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+  +     RPCL + + +C G C  ++SS+KY 
Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKKVSSDKYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + + K FL+G     K ++ + M  A+   ++E A  +RD+L+ +         + + 
Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296
             + D F+ Y ++    IQ  F    +     T                 F+ QFY   +
Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
           +  P  IL+ +    +SL  +   +          P +G+K+ +++ A  N+        
Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKI 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                  +  +   ++      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+++K                   P+++++D
Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526
           GGK Q+ A   VL+   +   I +  + K          F      ++   + L+ +   
Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y I R++DE HRFAIT HR    K +  S LDEI GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579

Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612
            E L  + G++   A  +      + +
Sbjct: 580 IEDLKGV-GLTLTQAQSVKLVLENSQN 605


>gi|15618849|ref|NP_225135.1| excinuclease ABC subunit C [Chlamydophila pneumoniae CWL029]
 gi|15836473|ref|NP_300997.1| excinuclease ABC subunit C [Chlamydophila pneumoniae J138]
 gi|16752092|ref|NP_445458.1| excinuclease ABC subunit C [Chlamydophila pneumoniae AR39]
 gi|33242305|ref|NP_877246.1| excinuclease ABC subunit C [Chlamydophila pneumoniae TW-183]
 gi|8134801|sp|Q9Z6W6|UVRC_CHLPN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|4377263|gb|AAD19078.1| Excinuclease ABC, Subunit C [Chlamydophila pneumoniae CWL029]
 gi|7189835|gb|AAF38706.1| excinuclease ABC, subunit C [Chlamydophila pneumoniae AR39]
 gi|8979314|dbj|BAA99148.1| excinuclease ABC, subunit C [Chlamydophila pneumoniae J138]
 gi|33236816|gb|AAP98903.1| exinuclease ABC subunit C [Chlamydophila pneumoniae TW-183]
          Length = 603

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/607 (30%), Positives = 301/607 (49%), Gaps = 38/607 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            + +P  PGVY M D+  +VLY+GKA NL+ R+ SY H    +  RI  ++ +  +I   
Sbjct: 8   LKLIPSSPGVYLMKDVHDQVLYIGKAKNLKNRLASYFHEKGDSRERIPFLMKKTASIETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118
           V   E EALLLE N+IK+  P++N+LL+DDK+F  + I+  H  P +   R     S+ +
Sbjct: 68  VVSNETEALLLENNLIKQHHPKYNVLLKDDKTFFCLAISLSHSWPKVEAIRTKAITSSQR 127

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
              FGP+ S +A    +  + + F LR+C+D  F  R RPC+L+ +KRC  PC G  + E
Sbjct: 128 QLIFGPYVSAEACHTLLEVISQWFPLRTCSDREFALRKRPCILYDMKRCLAPCVGYCTPE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y   + +A  FL G    + + + + + +A+   ++E A  +   L+ +          
Sbjct: 188 EYQGTLDKAILFLKGKIEEVVKDLEKVIQKASDNLEFEQAANYYRTLSLIKQAMAKQQVE 247

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +  +D   LY +K    +       G+  G   F    +++     + S+ L+ + +
Sbjct: 248 KFHFQNIDALGLYRHKQRTILTLLTVRSGKLLGARHFSFFENAQEDQDLLSSFILQYYVS 307

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ IL     E  +L  +   +      ++  PK G  +++++ A  NA       
Sbjct: 308 QPYIPKEILTPLPLEFPTLSYVLNAE---SPPRLRSPKTGYGKELLDLAYRNAKAYAATT 364

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L +        +DF     +   P RIE YDN+H+ G  A G  +V   NGF   QYR F
Sbjct: 365 LPSSTLPY---QDFQNILRMSQYPYRIECYDNAHMQGAHATGVYIVFENNGFDPKQYRTF 421

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           ++  +  KTQ+D A++  VL RRF  L                   + PD++++DGGK  
Sbjct: 422 SI--DSEKTQNDLALLEEVLLRRFHSLT-----------------TALPDMIVVDGGKTH 462

Query: 476 LSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
            +  + +++ LN+   I +++IAK      R    EK F +   E   L     +L F Q
Sbjct: 463 YNKTKKIIQTLNLTG-IQVVTIAKEKSNHSRGLNKEKIFCETFPEGFSLPPTSNLLQFFQ 521

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            LRDEAHRFAI+ HRK+R KA +   ++I GIG ++++ LLQ F + K +  SS E L +
Sbjct: 522 ILRDEAHRFAISKHRKKRGKALF-EQEKIPGIGEVKRKRLLQKFKSWKQVMLSSQEELEA 580

Query: 592 IEGISKK 598
           I G++KK
Sbjct: 581 IPGLTKK 587


>gi|257053701|ref|YP_003131534.1| excinuclease ABC subunit C [Halorhabdus utahensis DSM 12940]
 gi|256692464|gb|ACV12801.1| excinuclease ABC, C subunit [Halorhabdus utahensis DSM 12940]
          Length = 579

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 183/611 (29%), Positives = 277/611 (45%), Gaps = 51/611 (8%)

Query: 5   QMPECPGVYQMLDI---AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            +P  PGVYQ LD       VLYVGKA +L+ R++SY  ++    RI  M+ +  +I   
Sbjct: 12  DLPTEPGVYQFLDSTRGDATVLYVGKAVDLRDRVRSY--ADPRGERIRRMVERAADIDVV 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE +ALLLEAN IKR +PR+N+ LRDDKS+P + +T  H  P +   RD        
Sbjct: 70  VTDTETQALLLEANFIKRYQPRYNVRLRDDKSYPLVQLT-DHPTPRIEITRDP-DEGADV 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF     VE    +++ T+ LR C+D  + +R RPCL + I  CS PCTGEI+   Y 
Sbjct: 128 FGPFTDKSQVETVCKAIRETYGLRGCSDHKYANRDRPCLDYDIGLCSAPCTGEINPATYR 187

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQ-----NHND 236
           E V   ++F  G    L E I   M +A     +E A   RDRLA +             
Sbjct: 188 EDVAAIRRFFRGETGVLAEPIRAEMERAADSAAFERAANLRDRLAVVESFHTGGGGAVES 247

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           +     D  ++    + A +       G         ++T  +     +L+ F+ Q+Y +
Sbjct: 248 TQDRTTDVLAVALEGDAATVARLHSTGGSLVDRERHAVETPDDRRAGDVLAAFVPQYYAE 307

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P+ +LLSE   +  +            V + VP  G +  +++ AL NA R      
Sbjct: 308 RELPDRLLLSERLPDDDVRSWLTS----AGVDVVVPGAGREATLVDLALKNARR------ 357

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             +      +        L     RIE +D SH  G S VG  V   +    K  YR+  
Sbjct: 358 --KTGQDDGVAALADALGLDAAD-RIEGFDVSHTGGGSVVGSDVCFVDGTPAKPDYRRKK 414

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           L        DD A MR ++  R  + +   ++               PD++++DGG+GQL
Sbjct: 415 LPE----GNDDYAAMRSLIGWRAERAVAGRDDRPD------------PDLLLIDGGEGQL 458

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           +AA+  L  +  +  I  + +AK  +R    E+ +             P L  +QR+RDE
Sbjct: 459 AAAREALDAVGWD--IPAVGLAKAEERVITPERVYKWDD-------DAPQLQLLQRVRDE 509

Query: 537 AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           AHRFA+  H   R     + LD++ G+GP  +  LL  FG+V  +  +S   L  + G+ 
Sbjct: 510 AHRFAVQYHETLRD-DVSTALDDVPGVGPELRTRLLGRFGSVDGVREASLSELRDVPGVG 568

Query: 597 KKIACKIYNHF 607
           +  A  I    
Sbjct: 569 EATAKTIRRQL 579


>gi|269302730|gb|ACZ32830.1| excinuclease ABC, C subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 603

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/607 (30%), Positives = 301/607 (49%), Gaps = 38/607 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            + +P  PGVY M D+  +VLY+GKA NL+ R+ SY H    +  RI  ++ +  ++   
Sbjct: 8   LKLIPSSPGVYLMKDVHDQVLYIGKAKNLKNRLASYFHEKGDSRERIPFLMKKTASVETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118
           V   E EALLLE N+IK+  P++N+LL+DDK+F  + I+  H  P +   R     S+ +
Sbjct: 68  VVSNETEALLLENNLIKQHHPKYNVLLKDDKTFFCLAISLSHSWPKVEAIRTKAITSSQR 127

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
              FGP+ S +A    +  + + F LR+C+D  F  R RPC+L+ +KRC  PC G  + E
Sbjct: 128 QLIFGPYVSAEACHTLLEVISQWFPLRTCSDREFALRKRPCILYDMKRCLAPCVGYCTPE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y   + +A  FL G    + + + + + +A+   ++E A  +   L+ +          
Sbjct: 188 EYQGTLDKAILFLKGKIEEVVKDLEKAIQKASDNLEFEQAANYYRTLSLIKQAMAKQQVE 247

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +  +D   LY +K    +       G+  G   F    +++     + S+ L+ + +
Sbjct: 248 KFHFQNIDALGLYRHKQRTILTLLTVRSGKLLGARHFSFFENAQEDQDLLSSFILQYYVS 307

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ IL     E  +L  +   +      ++  PK G  +++++ A  NA       
Sbjct: 308 QPYIPKEILTPLPLEFPTLSYVLNAE---SPPRLRSPKTGYGKELLDLAYRNAKAYAATT 364

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L +        +DF     +   P RIE YDN+H+ G  A G  +V   NGF   QYR F
Sbjct: 365 LPSSTLPY---QDFQNILRMSQYPYRIECYDNAHMQGAHATGVYIVFENNGFDPKQYRTF 421

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           ++  +  KTQ+D A++  VL RRF  L                   + PD++++DGGK  
Sbjct: 422 SI--DSEKTQNDLALLEEVLLRRFHSLT-----------------TALPDMIVVDGGKTH 462

Query: 476 LSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQ 531
            +  + +L+ LN+   I +++IAK      R    EK F +   E   L     +L F Q
Sbjct: 463 YNKTKKILQTLNLTG-IQVVTIAKEKSNHSRGLNKEKIFCETFPEGFSLPPTSNLLQFFQ 521

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            LRDEAHRFAI+ HRK+R KA +   ++I GIG ++++ LLQ F + K +  SS E L +
Sbjct: 522 ILRDEAHRFAISKHRKKRGKALF-EQEKIPGIGEVKRKRLLQKFKSWKQVMLSSQEELEA 580

Query: 592 IEGISKK 598
           I G++KK
Sbjct: 581 IPGLTKK 587


>gi|259500676|ref|ZP_05743578.1| excision endonuclease subunit UvrC [Lactobacillus iners DSM 13335]
 gi|302191365|ref|ZP_07267619.1| excinuclease ABC subunit C [Lactobacillus iners AB-1]
 gi|259168060|gb|EEW52555.1| excision endonuclease subunit UvrC [Lactobacillus iners DSM 13335]
          Length = 605

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 294/627 (46%), Gaps = 46/627 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY  S     R   ++  IN+    
Sbjct: 9   KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L++   +P+I IT+  + P +         +G Y
Sbjct: 68  VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+  +     RPCL + + +C G C  E+SS++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYSMGQCLGSCFKEVSSDRYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + + K FL+G     K ++ + M  A+   ++E A  +RD+L+ +         + N 
Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERASEYRDQLSYIEQTVEKQKIMLND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296
             + D F+ Y ++    IQ  F    +     T                 F+ QFY   +
Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
           +  P  IL+ +    +SL  +   +       + +P +G+K+ +++ A  N+        
Sbjct: 303 RLFPNEILVPKGVNASSLAAVLKVR-------VKIPSRGQKKALLDMAYENSKIKLDEKI 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                  +  +   ++      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+++K                   P+++++D
Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526
           GGK Q+ A   VL+   +   I +  + K          F      ++   + L+ +   
Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTISLDSKSQA 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y I R++DE HRFAIT HR    K +  S LDEI GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579

Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612
            E L  + G++   A  +      + +
Sbjct: 580 IEDLKGV-GLTLTQAQSVKLVLENSQN 605


>gi|15834793|ref|NP_296552.1| excinuclease ABC subunit C [Chlamydia muridarum Nigg]
 gi|7190209|gb|AAF39047.1| excinuclease ABC, subunit C [Chlamydia muridarum Nigg]
          Length = 601

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 187/615 (30%), Positives = 286/615 (46%), Gaps = 42/615 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            + +   PGVY M D  G VLYVGKA NL+ R+ SY+  N  +  RI  ++ +  +I   
Sbjct: 11  LKNVSSSPGVYLMKDSQGVVLYVGKAKNLRNRLSSYLQKNGDSRERIPFLMKRTADIDTI 70

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD----SSTI 117
           V   E EALLLE N+IK+ +PR+N+LL+DDK+F  + I+ +H  P +   R      S  
Sbjct: 71  VVSNETEALLLENNLIKKYQPRYNVLLKDDKTFFCLSISLQHPWPKIEAIRTRALSPSKK 130

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +   FGP+ S +A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S 
Sbjct: 131 KQLLFGPYVSAEACYALLEVISHWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGFCSQ 190

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            +Y E + +A  FL G        +   + +A+ +  +E A      L  +         
Sbjct: 191 TEYQETLEKAILFLKGEVDTTIANLEEAIKKASQEHKFEHAAALYRTLTLIRQTMAKQHV 250

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                  +D   LY    LA I     + G+  G   F    +++  ++   S+ L+ + 
Sbjct: 251 EKFQAYDIDVLGLYRKGPLAIISVLSVYSGKLLGARHFTFPENAQEDSSLFSSFILQYYA 310

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P+ I +    +   L    +        KI  PK    ++++  A  NA      
Sbjct: 311 ENTRIPKQIFVPVSPDSPELP---YLLNAAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 367

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                 S  +  ++  + F     P RIE YDN+H+ G   VG  +V  +  F   QYR 
Sbjct: 368 L----NSITLPYEELQQLFKFSQYPNRIECYDNAHLQGEHNVGVYIVFEKGSFSPKQYRT 423

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F++        DD A    VL RRF  L                     PD++++DGG+ 
Sbjct: 424 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPDLIVIDGGRN 462

Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530
           Q   AQ +L+KLN+   I ++SIAK      R    EK F +   + ++LN    IL F 
Sbjct: 463 QFRRAQHILEKLNLTG-IAVVSIAKESGNHSRGLQQEKLFCEAFPQGILLNPTSEILQFF 521

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           Q LRDEAHRFAI  +R +  KA  +   +I GIG  +   LLQ F + K I  +S E L 
Sbjct: 522 QLLRDEAHRFAINRYRNKHSKAILTT-KKIPGIGKTKTTHLLQKFKSWKRILSASEEELK 580

Query: 591 SIEGISKKIACKIYN 605
           +++G++KK   +I  
Sbjct: 581 TVQGLTKKDIQRIQE 595


>gi|315187288|gb|EFU21044.1| excinuclease ABC, C subunit [Spirochaeta thermophila DSM 6578]
          Length = 610

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 172/620 (27%), Positives = 283/620 (45%), Gaps = 54/620 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E  P  PGVY M D  G+V+YVGKA  L+ R++SY+       + TH++ ++ +I + 
Sbjct: 15  QVEAAPSSPGVYLMRDEEGKVIYVGKAKVLRNRLRSYISGT-KDRKTTHLMRRVRSIEWI 73

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE +ALLLE  +IK+ +P++NI L+D KS+P I +T     P +++ R        Y
Sbjct: 74  VTDTEYDALLLENTLIKKYQPKYNIDLKDGKSYPVIRLT-AEDFPRVFRTRKIVHDGSRY 132

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +   ++  ++ + R F LR C     R R  PCL + I RC  PC  +IS E Y+
Sbjct: 133 FGPYGNAHLLDLYLDFIDRFFPLRKC-RGPLRKRAHPCLYYHIGRCPAPCVDKISREDYL 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             V +  + LSG   +L+  +   M +A  +  YE+A  +RD L A+  I  +   + + 
Sbjct: 192 ARVEDVARLLSGEVEDLQTSLKGRMEEAASRLAYETAARYRDALQAVEEILKNEQKVVDF 251

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
              + D  +    +  AC        G+  G   + +    +  +    ++ +R +  D 
Sbjct: 252 AREKRDYAAYVREEPYACFVVFKMRDGKLVGRDAY-VTHAFDEDDEDFSNFLVRYYDADI 310

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             PE + L          E         K  I + ++GE   I+   + NA     + L 
Sbjct: 311 ALPEELHL-----FQGTQEEILAPYLAGKFGIRLIREGEGHPILNLVVQNAREELARHLK 365

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + + + +L    +   LP  P RIE +D +H+ G      MV        K++YR F +
Sbjct: 366 IKGNPEAVL-ALQEALELPVPPVRIEGFDIAHLQGTFPYASMVQFLGGVPHKSEYRLFRV 424

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   DD   +R V  RR+++L    + L              PD++++DGGKGQ++
Sbjct: 425 KTLQGL-VDDYEALREVTARRYTRLKNERKPL--------------PDLILIDGGKGQVN 469

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A + VL  L +   I ++ +AK  +     E FF      L+L  R P L  +Q +RDEA
Sbjct: 470 AVREVLDALGLS-HIPLVGLAKQRE-----EIFFPHASAPLLLEERSPALRLLQYVRDEA 523

Query: 538 HRF----------AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           HRF                    K   S L+ + GIG  R   LL  +G++  I+R+  E
Sbjct: 524 HRFATTAHARARAV---------KIDGSILETVEGIGKKRAVRLLTHYGSLDAIARAEAE 574

Query: 588 TLASIEGISKKIACKIYNHF 607
            +  + G  + +A ++    
Sbjct: 575 EIKEVAGCPEHVALRVKEAL 594


>gi|328947735|ref|YP_004365072.1| UvrABC system protein C [Treponema succinifaciens DSM 2489]
 gi|328448059|gb|AEB13775.1| UvrABC system protein C [Treponema succinifaciens DSM 2489]
          Length = 655

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 174/607 (28%), Positives = 286/607 (47%), Gaps = 36/607 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           + P   GVY   +    V+YVGKA NL+ R+ SY   N    +   +IS+  +I +  T 
Sbjct: 24  KAPLKSGVYLWRNEEQTVIYVGKAKNLKNRLTSYFSGN-KDIKTRLLISRARSIEYITTD 82

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EA LLE N+IK+  PR+NI L+D KS+P I +T K K P L+K R+ +     YFGP
Sbjct: 83  NEYEAFLLENNLIKKYSPRYNISLKDGKSYPVIKVT-KEKFPRLFKTRNITHDGSIYFGP 141

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F    A++  + +L   + LR C    FR +  PC+ + I RC  PC  + +   Y EF+
Sbjct: 142 FPDASALDSFLETLYEIYPLRRCKK--FREKNFPCMYYHIGRCKAPCCKKTNESTYNEFI 199

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241
            E    L G      +K+   M +A    ++E A   RD + AL  +Q+ N         
Sbjct: 200 EEICSLLEGKGEETVKKLQGQMKEAAKNLNFEKAARLRDGIKALEILQHRNIVESFEGTD 259

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  + +    L          G+  G   +   + +E +  +++  F+  +Y +K    
Sbjct: 260 KDYIAPWREGELVSFTVLKMRGGKLLGRDNYRTVSLNEDS--ELIPEFMASYYNEKELIP 317

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE---QALINAHRSHTQKLST 358
             +   +++ T  ++   F+ YG K +I    +            A  NA      +   
Sbjct: 318 PQIYIMQSDGTEFMKRWIFETYGIKTEIIAVNENSPAVHKAAIGMAQQNAKE-DIVRRMR 376

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E      +++  K+ +LP++P RIE +D +HI G   V  ++        K  YR F L 
Sbjct: 377 ERGDFPAMEELKKELSLPNLPARIEGFDIAHIGGKFPVASLISFYNGNPDKKNYRYFRLK 436

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             D    DD A M+  + RR+++LI  ++ L              PD++++DGG GQ++A
Sbjct: 437 TTDGI-IDDFASMKEAVSRRYTRLINEKKEL--------------PDLILIDGGIGQVNA 481

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
              +LK L+++  I I  +AK  +     E +       + L  R   L  +QR+RDE H
Sbjct: 482 VDSILKSLDLD--IPIAGLAKRDE-----EIYRPGNSMPIRLPKRSDALRLLQRVRDETH 534

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFA + +++ R K    SP  +I GIGP R  LL++ FGT+K ++ S+   ++    + +
Sbjct: 535 RFATSRNQELRTKENTVSPFTKIRGIGPKRDALLMKKFGTLKSLAESNENEISETLKVPE 594

Query: 598 KIACKIY 604
           + A +I 
Sbjct: 595 EAAQEIL 601


>gi|307719872|ref|YP_003875404.1| UvrABC system protein C [Spirochaeta thermophila DSM 6192]
 gi|306533597|gb|ADN03131.1| UvrABC system protein C [Spirochaeta thermophila DSM 6192]
          Length = 612

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 173/620 (27%), Positives = 283/620 (45%), Gaps = 54/620 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E  P  PGVY M D  G+V+YVGKA  L+ R++SY+       + TH++ ++ +I + 
Sbjct: 15  QVEAAPSSPGVYLMRDEEGKVIYVGKAKVLRNRLRSYISGT-KDRKTTHLMRRVRSIEWI 73

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE +ALLLE  +IK+ +P++NI L+D KS+P I +T     P +++ R        Y
Sbjct: 74  VTDTEYDALLLENTLIKKYQPKYNIDLKDGKSYPVIRLT-AEDFPRVFRTRKIVHDGSRY 132

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ S   ++  ++ + R F LR C     R R  PCL + I RC  PC  +IS E Y+
Sbjct: 133 FGPYGSAHLLDLYLDFIDRFFPLRKC-RGPLRKRAHPCLYYHIGRCPAPCVDKISREDYL 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             V +  + LSG   +L+  +   M +A  +  YE+A  +RD L A+  I  +   + + 
Sbjct: 192 ARVEDVARLLSGEVEDLQTSLKGRMEEAASRLAYETAARYRDALQAVEEILKNEQKVVDF 251

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
              + D  +    +  AC        G+  G   + +    +  +    ++ +R +  D 
Sbjct: 252 AREKRDYAAYVREEPYACFVVFKMRDGKLVGRDAY-VTHAFDEDDEDFSNFLVRYYDADI 310

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             PE + L          E         K  I + ++GE   I+   + NA     + L 
Sbjct: 311 ALPEELHL-----FQGTQEEILAPYLAGKFGIRLIREGEGHPILNLVVQNAREELARHLK 365

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + + + +L    +   LP  P RIE +D +H+ G      MV        K++YR F +
Sbjct: 366 IKGNPEAVL-ALQEALELPVPPVRIEGFDIAHLQGTFPYASMVQFLGGVPHKSEYRLFRV 424

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   DD   +R V  RR+++L    + L              PD++++DGGKGQ++
Sbjct: 425 KTLQGL-VDDYEALREVTARRYTRLKNERKPL--------------PDLILIDGGKGQVN 469

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           A + VL  L +   I ++ +AK  +     E FF      L+L  R P L  +Q +RDEA
Sbjct: 470 AVREVLDALGLS-HIPLVGLAKQRE-----EIFFPHASAPLLLEERSPALRLLQYVRDEA 523

Query: 538 HRF----------AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           HRF                    K   S L+ + GIG  R   LL  +G++  I+R+  E
Sbjct: 524 HRFATTAHARARAV---------KIDGSILETVEGIGKKRAVRLLTHYGSLDAIARAEAE 574

Query: 588 TLASIEGISKKIACKIYNHF 607
            +  + G  + +A ++    
Sbjct: 575 EIKEVAGCPEHVALRVKEAL 594


>gi|119370541|sp|Q9PLD1|UVRC_CHLMU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 598

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 187/615 (30%), Positives = 286/615 (46%), Gaps = 42/615 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            + +   PGVY M D  G VLYVGKA NL+ R+ SY+  N  +  RI  ++ +  +I   
Sbjct: 8   LKNVSSSPGVYLMKDSQGVVLYVGKAKNLRNRLSSYLQKNGDSRERIPFLMKRTADIDTI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD----SSTI 117
           V   E EALLLE N+IK+ +PR+N+LL+DDK+F  + I+ +H  P +   R      S  
Sbjct: 68  VVSNETEALLLENNLIKKYQPRYNVLLKDDKTFFCLSISLQHPWPKIEAIRTRALSPSKK 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +   FGP+ S +A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S 
Sbjct: 128 KQLLFGPYVSAEACYALLEVISHWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGFCSQ 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            +Y E + +A  FL G        +   + +A+ +  +E A      L  +         
Sbjct: 188 TEYQETLEKAILFLKGEVDTTIANLEEAIKKASQEHKFEHAAALYRTLTLIRQTMAKQHV 247

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                  +D   LY    LA I     + G+  G   F    +++  ++   S+ L+ + 
Sbjct: 248 EKFQAYDIDVLGLYRKGPLAIISVLSVYSGKLLGARHFTFPENAQEDSSLFSSFILQYYA 307

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P+ I +    +   L    +        KI  PK    ++++  A  NA      
Sbjct: 308 ENTRIPKQIFVPVSPDSPELP---YLLNAAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                 S  +  ++  + F     P RIE YDN+H+ G   VG  +V  +  F   QYR 
Sbjct: 365 L----NSITLPYEELQQLFKFSQYPNRIECYDNAHLQGEHNVGVYIVFEKGSFSPKQYRT 420

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F++        DD A    VL RRF  L                     PD++++DGG+ 
Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPDLIVIDGGRN 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530
           Q   AQ +L+KLN+   I ++SIAK      R    EK F +   + ++LN    IL F 
Sbjct: 460 QFRRAQHILEKLNLTG-IAVVSIAKESGNHSRGLQQEKLFCEAFPQGILLNPTSEILQFF 518

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           Q LRDEAHRFAI  +R +  KA  +   +I GIG  +   LLQ F + K I  +S E L 
Sbjct: 519 QLLRDEAHRFAINRYRNKHSKAILTT-KKIPGIGKTKTTHLLQKFKSWKRILSASEEELK 577

Query: 591 SIEGISKKIACKIYN 605
           +++G++KK   +I  
Sbjct: 578 TVQGLTKKDIQRIQE 592


>gi|309807094|ref|ZP_07701073.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 03V1-b]
 gi|308166524|gb|EFO68724.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 03V1-b]
          Length = 605

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/627 (26%), Positives = 292/627 (46%), Gaps = 46/627 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY  S     R   ++  IN+    
Sbjct: 9   KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L++   +P+I IT+  + P +         +G Y
Sbjct: 68  VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+  +     RPCL + + +C G C  ++SS+KY 
Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKKVSSDKYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + + K FL+G     K ++ + M  A+   ++E A  +RD+L+ +         + + 
Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296
             + D F+ Y ++    IQ  F    +     T                 F+ QFY   +
Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
           +  P  IL+ +    +SL  I   +          P +G+K+ +++ A  N+        
Sbjct: 303 RLLPNEILVPKGVNVSSLAAILKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKI 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                  +  +   ++      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+++K                   P+++++D
Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526
           GGK Q+ A   VL+   +   I +  + K          F      ++   + L+ +   
Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y I R++DE HRFAIT HR    K +  S LDEI GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579

Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612
            E L  I G++   A  +      + +
Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605


>gi|309807939|ref|ZP_07701867.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 01V1-a]
 gi|312875452|ref|ZP_07735455.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2053A-b]
 gi|308168790|gb|EFO70880.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 01V1-a]
 gi|311088963|gb|EFQ47404.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 605

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/627 (26%), Positives = 294/627 (46%), Gaps = 46/627 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY  S     R   ++  IN+    
Sbjct: 9   KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L++   +P+I IT+  + P +         +G Y
Sbjct: 68  VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+  +     RPCL + + +C G C  E+SS+KY 
Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + + K FL+G     K ++ + M  A+   ++E A  +RD+L+ +         + + 
Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296
             + D F+ Y ++    IQ  F    +     T                 F+ QFY   +
Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
           +  P  IL+ +    +SL  +   +       + +P +G+K+ +++ A  N+        
Sbjct: 303 RLLPNEILVPKGVNVSSLAAVLKVR-------VKIPSRGQKKALLDMAYENSKIKLDEKI 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                  +  +   ++      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+++K                   P+++++D
Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526
           GGK Q+ A   VL+   +   I +  + K          F      ++   + L+ +   
Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y I R++DE HRFAIT HR    K +  S LDEI GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579

Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612
            E L  I G++   A  +      + +
Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605


>gi|292657114|ref|YP_003537011.1| excinuclease ABC subunit C [Haloferax volcanii DS2]
 gi|291372136|gb|ADE04363.1| excinuclease ABC subunit C [Haloferax volcanii DS2]
          Length = 579

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/613 (30%), Positives = 296/613 (48%), Gaps = 51/613 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +  +P  PGVYQ +     VLYVGKA +++ R++SY  ++  + RI+ M+ +  +I F V
Sbjct: 10  ASALPSDPGVYQFV-AGDAVLYVGKAVDIRARVRSY--ADPRSERISRMVDRAEHIDFAV 66

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +T  H +P +   RD      + F
Sbjct: 67  TDTETQALLLEANLIKRHQPRYNVRLKDDKSYPLVQLT-AHAVPRIEVTRDPE-DSATVF 124

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+     VE  + +++ T+ LR C+D  + +R+RPCL +++  C+ PCTGEI+   Y E
Sbjct: 125 GPYTDKGRVETVVKAIRETYGLRGCSDHKYSNRSRPCLDYEMGLCTAPCTGEIAERDYRE 184

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN------HND 236
            V  A +F  G    L + + R M  A    ++E A   RDRL A+            + 
Sbjct: 185 DVESAVRFFEGETGVLADPLRREMEAAAQDAEFERAANLRDRLEAVESFHGAGEDAVSSQ 244

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST-NAQILSYFLRQFYT 295
           S    +D   +    + A +       GQ        L         A +LS FL QFY 
Sbjct: 245 SDERAIDVLGVSLRGDSATVARLHAERGQLVDRTRHHLDAPEGEDRTAAVLSAFLAQFYA 304

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           ++  P+ ++LSE  ++  ++     +     V + +P  G + K++E AL NA R     
Sbjct: 305 ERDLPDAVVLSEHPDDEDVVAWLEAEG----VGVRIPGAGREAKLVELALKNARR----- 355

Query: 356 LSTEISHQMILKDFTKKFALPHIPK-RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                     L    ++  L      RIE +D SH  G + VG  V   E       YR+
Sbjct: 356 ---RAGRDDGLATLARELDLDVRRVARIEGFDVSHAQGKAVVGSDVCFVEGSAETADYRR 412

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
             L        DD A MR ++  R ++ ++  ++               PD++++DGGKG
Sbjct: 413 RRLPER----NDDYANMRDLVRWRATRALEGRDDRPD------------PDLLLIDGGKG 456

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QL+AA   L +   +  +  + IAK  +         V            P L+ +QR+R
Sbjct: 457 QLNAALDALDETGWD--VPAVGIAKDRE-------LVVTPDRTFDWPDDAPHLHVLQRVR 507

Query: 535 DEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           DEAHRFA+  H+  R +   + LD++ G+G   +R LL  FG+V+ +  +S E L  + G
Sbjct: 508 DEAHRFAVQYHQTLRDE-VKTVLDDVPGVGEKTRRALLTRFGSVEGVREASVEDLTDVPG 566

Query: 595 ISKKIACKIYNHF 607
           + +K A ++    
Sbjct: 567 VGEKTADELKRRL 579


>gi|315653489|ref|ZP_07906410.1| excinuclease ABC subunit C [Lactobacillus iners ATCC 55195]
 gi|329921328|ref|ZP_08277766.1| excinuclease ABC, C subunit [Lactobacillus iners SPIN 1401G]
 gi|315489180|gb|EFU78821.1| excinuclease ABC subunit C [Lactobacillus iners ATCC 55195]
 gi|328934620|gb|EGG31124.1| excinuclease ABC, C subunit [Lactobacillus iners SPIN 1401G]
          Length = 605

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/627 (26%), Positives = 294/627 (46%), Gaps = 46/627 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY  S     R   ++  IN+    
Sbjct: 9   KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L++   +P+I IT+  + P +         +G Y
Sbjct: 68  VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+  +     RPCL + + +C G C  E+SS+KY 
Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + + K FL+G     K ++ + M  A+   ++E A  +RD+L+ +         + + 
Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296
             + D F+ Y ++    IQ  F    +     T                 F+ QFY   +
Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
           +  P  IL+ +    +SL  +   +       + +P +G+K+ +++ A  N+        
Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVR-------VKIPSRGQKKALLDMAYENSKIKLDEKI 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                  +  +   ++      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+++K                   P+++++D
Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526
           GGK Q+ A   VL+   +   I +  + K          F      ++   + L+ +   
Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y I R++DE HRFAIT HR    K +  S LDEI GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579

Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612
            E L  I G++   A  +      + +
Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605


>gi|309804152|ref|ZP_07698230.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308163735|gb|EFO66004.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 11V1-d]
          Length = 605

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/627 (27%), Positives = 294/627 (46%), Gaps = 46/627 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY  S     R   ++  IN+    
Sbjct: 9   KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L++   +P+I IT+  K P +         +G Y
Sbjct: 68  VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-EKDPEVKLTSIIKKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+  +     RPCL + + +C G C  E+SS+KY 
Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + + K FL+G     K ++ + M  A+   ++E A  +RD+L+ +         + + 
Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296
             + D F+ Y ++    IQ  F    +     T                 F+ QFY   +
Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
           +  P  IL+ +    +SL  +   +       + +P +G+K+ +++ A  N+        
Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVR-------VKIPSRGQKKALLDMAYENSKIKLDEKI 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                  +  +   ++      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+++K                   P+++++D
Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526
           GGK Q+ A   VL+   +   I +  + K          F      ++   + L+ +   
Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y I R++DE HRFAIT HR    K +  S LDEI GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579

Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612
            E L  I G++   A  +      + +
Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605


>gi|325911978|ref|ZP_08174380.1| excinuclease ABC, C subunit [Lactobacillus iners UPII 143-D]
 gi|325476163|gb|EGC79327.1| excinuclease ABC, C subunit [Lactobacillus iners UPII 143-D]
          Length = 605

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/627 (26%), Positives = 294/627 (46%), Gaps = 46/627 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY  S     R   ++  IN+    
Sbjct: 9   KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L++   +P+I IT+  + P +         +G Y
Sbjct: 68  VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+  +     RPCL + + +C G C  E+SS++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYSMGQCLGSCFKEVSSDRYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + + K FL+G     K ++ + M  A+   ++E A  +RD+L+ +         + N 
Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERASEYRDQLSYIEQTVEKQKIMLND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296
             + D F+ Y ++    IQ  F    +     T                 F+ QFY   +
Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
           +  P  IL+ +    +SL  +   +       + +P +G+K+ +++ A  N+        
Sbjct: 303 RLFPNEILVPKGVNASSLAAVLKVR-------VKIPSRGQKKALLDMAYENSKIKLDEKI 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                  +  +   ++      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+++K                   P+++++D
Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526
           GGK Q+ A   VL+   +   I +  + K          F      ++   + L+ +   
Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y I R++DE HRFAIT HR    K +  S LDEI GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPKSRNKLLKNFGSLKKIREAS 579

Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612
            E L  I G++   A  +      + +
Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605


>gi|295426311|ref|ZP_06818971.1| excision endonuclease subunit UvrC [Lactobacillus amylolyticus DSM
           11664]
 gi|295064050|gb|EFG54998.1| excision endonuclease subunit UvrC [Lactobacillus amylolyticus DSM
           11664]
          Length = 600

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/622 (27%), Positives = 282/622 (45%), Gaps = 46/622 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y M DI G V+YVGK+ NL+ R++SY  S     R   ++ +I +    
Sbjct: 9   KLKFLPAKPGCYLMKDINGTVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVREIRDYDII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
              T+ EA LLE  +IK+ +P +N+ L+    +PYI IT+  + P           +G Y
Sbjct: 68  TVSTDKEAFLLEITLIKKYQPYYNVQLKQGTGYPYIEITN-ERDPQTKLTSVVHKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ F LR C         RPCL + + +C G C  ++  ++Y 
Sbjct: 127 FGPYPNVYAAQATLKFIQKVFPLRRCNGYQ----GRPCLYYHMGQCLGACFKKVPEKEYA 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E + + K FL+G    +K+ + + M  A+ + ++E A   RD+L  +         I N 
Sbjct: 183 EQIKKIKSFLNGDIGWVKQDLTQKMETASQQLEFERAAEIRDQLKYIEETVEKQKIISND 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
             + D F+ Y +K+   +Q  F    +     T                 F+ QFY  + 
Sbjct: 243 NTQRDIFNFYVDKSWLSVQIFFLRQAKLLRRETRMFPLTDAGEPEDEFVSFIVQFYNQRN 302

Query: 299 --CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ +L+ +  +   L E+         V +  P++G+KR ++E A  NA      K 
Sbjct: 303 RVLPKEVLVPKGIDNEDLSEVLH-------VPVRTPQRGQKRALLEMAKDNAKLKLDDKF 355

Query: 357 S----TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                     +   K+      LP+    IE +D+SHI G   V  +VV  +    K  Y
Sbjct: 356 RLLELGNRKTKGAQKEIFAALGLPYG-HIIESFDHSHIQGADPVSALVVFKDGETDKTSY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RK+ L          D+    R V+ RR+ +L++  + +              PD++++D
Sbjct: 415 RKYKLKGEVEHQNGGDELRNTREVVRRRYGRLLREHKKM--------------PDLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF-FVKKGEALVL---NMRDPI 526
           GG+ Q+ A + VL+   +   I +  + K  K       F     G+   L   + +   
Sbjct: 461 GGQIQVEACEDVLRN-ELNLNIPVAGMVKDDKHRTNHLLFGDPINGQPFKLIPMDPKSQG 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y + R++DE HRFAIT HR+   K A  S LD I GIGP  +  LL+ FG++K I  +S
Sbjct: 520 FYLMTRIQDEVHRFAITFHRRTHAKNALSSRLDSIKGIGPKSRNKLLRQFGSMKKIKEAS 579

Query: 586 PETLASIEGISKKIACKIYNHF 607
            + L +  G++   A  +    
Sbjct: 580 IDELRNA-GLTLTQAQSVKLSL 600


>gi|330837535|ref|YP_004412176.1| UvrABC system protein C [Spirochaeta coccoides DSM 17374]
 gi|329749438|gb|AEC02794.1| UvrABC system protein C [Spirochaeta coccoides DSM 17374]
          Length = 611

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 167/611 (27%), Positives = 303/611 (49%), Gaps = 31/611 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            +  +P  PGVY M D +G V+YVGKA +L+KR+ SY   +    +   ++ +I++I   
Sbjct: 27  QARALPHAPGVYVMKDSSGHVIYVGKAKDLRKRVTSYF-LSGRNIKTEALVRKISDIDHI 85

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +  T+ EAL+LE N+IK+  P +NI L+D KS+P I IT     P ++K R       SY
Sbjct: 86  IVGTDYEALILENNLIKKYAPHYNISLKDGKSYPLIRIT-AEPFPKVFKTRRVIKDGSSY 144

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     ++  +  + + F LR C     R R +PCL   I  C+GPC G ++ E+Y 
Sbjct: 145 YGPYPDAHKLDTCLELISKIFPLRRCGSP-LRMREKPCLYHHIGMCAGPCIGAVTEEQYK 203

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD---RLAALSHIQNHNDSI 238
            +V + +KFL  G+ +L+EKI   M  A+ K D+E+A   RD    L +++  +   D  
Sbjct: 204 TYVDQVRKFLEDGSESLEEKIRAEMASASKKLDFETAAAKRDVLLALESVNRTRQVEDFS 263

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  ++     L  +       G+  G   +  +T  + T   +L++ ++ +   + 
Sbjct: 264 DESRDYAAIEMRAPLCTVSIMQIREGKLIGRALYRAETLGDETET-LLNFLMQYYADGEQ 322

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ + +S E +   L+   F + +   +++T+P +G+  +I++ A  NA R   ++L +
Sbjct: 323 LPKTLYVSHEIDT-DLIRQYFSQTHDRHIEVTLPMEGKHFRIVKMAAENAARDVEKRLRS 381

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +    L++  ++  L   P  IE +D + + G   V  ++   +       YR+FN+ 
Sbjct: 382 RDN-TGALEELAQELGLEAPPMLIEGFDIAQLAGKYTVASLISFRDGNPDPKNYRRFNIK 440

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             D +  DD   +R  + RR+++++                    P ++++DGGKGQ+ A
Sbjct: 441 SLDGR-IDDFEAVREAIARRYTRVLNEN--------------LEKPGLIMIDGGKGQVGA 485

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ +L  L + + I ++ +AK  +     E  F     +L+L    P L  +  +RDE H
Sbjct: 486 AREILDSLGLSD-IPLVGLAKDLE-----EIVFDDDRPSLLLPEDSPALRVLIAVRDECH 539

Query: 539 RFA-ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFA     R R + A +  L+ + G+G  R   ++++FG++  +  +S E +AS   I  
Sbjct: 540 RFATNANQRLRSQDATFKLLESVEGVGSARSARIMRTFGSLDALLSASEEDIASKAKIPL 599

Query: 598 KIACKIYNHFH 608
            +A KI    +
Sbjct: 600 IVARKILRKLN 610


>gi|19704425|ref|NP_603987.1| excinuclease ABC subunit C [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296328221|ref|ZP_06870752.1| excision endonuclease subunit UvrC [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|81483742|sp|Q8REL0|UVRC_FUSNN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|19714685|gb|AAL95286.1| Excinuclease ABC subunit C [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296154733|gb|EFG95519.1| excision endonuclease subunit UvrC [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 589

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 189/613 (30%), Positives = 308/613 (50%), Gaps = 39/613 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE  GVY M     +V+YVGKA NL+ R+ SY +  + + +   ++  I +I F +T 
Sbjct: 7   DIPESSGVYLMK-KNNKVIYVGKAKNLKNRVSSYFNRVHESEKTNELVKNIEDIEFFLTN 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           TE++ALLLE N+IK+  P++NILL+D+K++P+I I+ K    ++   R +       G Y
Sbjct: 66  TEIDALLLENNLIKKYSPKYNILLKDEKTYPFIKIS-KEDFSSIKIVRTTKALDIKSGEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +  N L + F +R C   + +   RPCL + +K C+GPC  +   E+Y 
Sbjct: 125 FGPYP--YGAWRLKNILMKLFKIRDCNRDMKKTSPRPCLKYYMKSCTGPCVYKDIKEEYN 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V   K+ L G    L  ++   MN+A+   D+E +II+R+++  L  I +     Y R
Sbjct: 183 KDVENLKQVLKGNTSKLINELTALMNKASQDMDFEKSIIYREQIKELKSIASSQIIQYER 242

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      + A I       G+  G  +  +   ++ T+  I       +Y+   
Sbjct: 243 ELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTSIDLKNKITDN-IYEAIFMSYYSKHI 301

Query: 299 CPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P++++L  E E     +++    +    K       +  ++++++ A  N  R      
Sbjct: 302 LPKSLVLDAEYENELSVVVKALTIEDSKKKEFHFPKIKSRRKELLDMAYKNLERDIESYF 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S + + +  +KD      L   P++IE +D S+I G  AV  M V  E    + +YRKF 
Sbjct: 362 SKKDTIEKGIKDLHDILGLKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD +MMR V+ERR+S+L   E                +PDV+++DGG GQ+
Sbjct: 422 IRCKDTP--DDFSMMREVIERRYSKLPDIE----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  VLK+L   +   ++S+A         E +   +    VL+     L   QR+RDE
Sbjct: 464 NSAGEVLKRLGKIHLSELLSLA-----ERNEEIYKYGESIPYVLSKDMEALKIFQRVRDE 518

Query: 537 AHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K+   S LD+I+GIG +R+R LL  FG++  I ++S E L  I  I
Sbjct: 519 AHRFGITYHRKIRSKRIISSELDKIDGIGEVRRRKLLTKFGSISAIKKASIEELKEI--I 576

Query: 596 SKKIACKIYNHFH 608
            +K+A +I N   
Sbjct: 577 PEKVALEIKNKIR 589


>gi|261367296|ref|ZP_05980179.1| excinuclease ABC subunit C [Subdoligranulum variabile DSM 15176]
 gi|282570899|gb|EFB76434.1| excinuclease ABC subunit C [Subdoligranulum variabile DSM 15176]
          Length = 616

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/612 (26%), Positives = 275/612 (44%), Gaps = 18/612 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTC 64
           +P  PGVY + D +  ++Y+GKA  L+ R+  Y      H  ++T MI+        V  
Sbjct: 13  LPLLPGVYIIRDKSDTIIYIGKAKRLKTRVSQYFREGVPHDAKVTQMIAHAFTFDVIVCQ 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EAL+LEA+ IK   P++NILL+DDK + Y+ +T     P +            Y GP
Sbjct: 73  SEFEALVLEASQIKAHTPKYNILLKDDKGYSYVKVTKG-PWPRISAALQKDDDGADYIGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYME 182
           F S  AV + +   Q  F L  C     R   + RPCL   I +C   C+G+IS E Y E
Sbjct: 132 FTSSFAVREMVEMAQDCFLLPRCNREFPRDFGKGRPCLNAHIGKCMAVCSGKISCEAYNE 191

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-- 240
            V  A + +  G  ++ +++   M  A+ + D+E+A + RD++ A+  +      + +  
Sbjct: 192 AVQGALRMIRYGKKDIVKQLREKMEAASERLDFETAALLRDQIQAIERVAAGQKVVMDGD 251

Query: 241 -RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
             MD  +L       C     +  G+       F+  D+         +  + +   +  
Sbjct: 252 TEMDVIALAGTTRAVCAAVLRYRDGR-LTDKREFVFHDTTDIEQVREEFLPQYYLDGETI 310

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ I + +   +   L  +  +  G KV++ VP++G+  K++  A  NA     ++    
Sbjct: 311 PKIIAVDKLPADAEALNEALNQTRGSKVELYVPQRGDVAKLVTMAYTNAVERLGRESGRY 370

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
              + +L++  +   L   P+ IE YD S+    S+V  MVV  +    ++ YR+F +  
Sbjct: 371 TREEKLLEEAAQMLGLKAPPRVIESYDISNWGDGSSVCGMVVFKDGKPHRSGYRRFKMKT 430

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             V   DD A +   L RR ++           P   +  F + PD++++DGG+GQ+ A 
Sbjct: 431 --VAGTDDYASLAETLSRRAAEY--EAARRGEKPDGPQNQFATLPDLLLIDGGRGQVGAV 486

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           +  LK   +E  +    + K               G  + +N    I  F+  ++DE HR
Sbjct: 487 KQALKGTALE-HVPTFGMVKDDHHRTRA--IVDDAGGEIAINRNRNIFTFVTNIQDETHR 543

Query: 540 FAITTHRKR--RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           +A    RKR  +K++  + L  + G+G      LL  F TV  +  +S   L  ++GIS 
Sbjct: 544 YANDY-RKRAMKKRSYAATLTALPGVGEKTSAALLAHFKTVAAVKAASISDLEEVKGISH 602

Query: 598 KIACKIYNHFHK 609
             A K+YN    
Sbjct: 603 AKAEKLYNALRN 614


>gi|237736971|ref|ZP_04567452.1| excinuclease ABC subunit C [Fusobacterium mortiferum ATCC 9817]
 gi|229420833|gb|EEO35880.1| excinuclease ABC subunit C [Fusobacterium mortiferum ATCC 9817]
          Length = 598

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 176/621 (28%), Positives = 291/621 (46%), Gaps = 39/621 (6%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +PE PGVY M     +V+YVGKA NL+ R+ SY +  + + +   ++  I +I F
Sbjct: 7   IKKLDIPENPGVYLMK-KNSKVIYVGKAKNLKNRVSSYFNREHESEKTRELVKNIEDIEF 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS---TI 117
            +  +E++AL+LE N+IK+  P++NILL+D+K++PYI I+ K   P +   R +    T 
Sbjct: 66  IICNSELDALVLENNLIKKYTPKYNILLKDEKTYPYIRIS-KENFPNIKIIRTTKALDTK 124

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
            G YFGP+           +L + F +R C   + +   RPCL + +K C GPCT +   
Sbjct: 125 SGLYFGPYP--FGAWNLKKALVKIFKIRDCERDMNKIYPRPCLKYFMKMCPGPCTYKDIF 182

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            +Y   V   K  L G    +   + ++M +A     +E AI  R+++  +     +  +
Sbjct: 183 LEYNGQVERVKNLLKGKEKEVIASLKKDMEKAAEDMRFEEAINLREQIKEVESAVVNQVT 242

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
            Y      D F +        I       G+  G  +  +    +     +    +  FY
Sbjct: 243 EYGKELDEDIFLMQKEGEKVFICVLNVRDGKILGKISTHIDLK-DKIEGNLEENIVTAFY 301

Query: 295 TDKPCPENILLS--EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
           +  P P++I+     E E   + EI   ++           +  +++++E   +N  R  
Sbjct: 302 SKHPIPKSIVFQEKMEDELNLVREILELQRGKKVEFHFPKIKSRRKELLEMGELNISRDI 361

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                 +   +  L     + +L   P++IE +D S+I G  AV  M V  E    K  Y
Sbjct: 362 ESYFKKKSVVEEGLYKIYTELSLKKYPRKIECFDISNIQGKDAVASMSVSVEGRASKKDY 421

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RKF +   D    DD AMMR V+ RR+S+L ++E                +PD+V++DGG
Sbjct: 422 RKFKITCKDTP--DDFAMMREVITRRYSKLPEHE----------------FPDIVLIDGG 463

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
            GQ++AA  V K++  +    ++S+AK  +     E +   +            L   QR
Sbjct: 464 LGQINAAGEVFKEIGKDGIAELLSLAKRDE-----EIYKYGEAIPYSFPKEWEALKIFQR 518

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDEAHRF IT HRK R K    S LD++ G+G  R+ +LL+ FG+VK I     ++LA 
Sbjct: 519 VRDEAHRFGITYHRKLRSKRVISSELDKVEGVGAKRREVLLKEFGSVKKILEEDVDSLAR 578

Query: 592 IEGISKKIACKIYNHFHKNTS 612
              + +K+A  I +    N  
Sbjct: 579 F--VPRKVAENILDTLKNNKD 597


>gi|300709537|ref|YP_003735351.1| excinuclease ABC subunit C [Halalkalicoccus jeotgali B3]
 gi|299123220|gb|ADJ13559.1| excinuclease ABC subunit C [Halalkalicoccus jeotgali B3]
          Length = 577

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 186/610 (30%), Positives = 299/610 (49%), Gaps = 51/610 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVYQ L   G  LYVGKA +L+ R++SY  ++  + RI  M+    +I F VT 
Sbjct: 12  TLPREPGVYQFL-ADGTTLYVGKAVDLRGRVRSY--ADPRSARIRRMVQGAESIDFAVTD 68

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +T  H+ P +   RD      + FGP
Sbjct: 69  TETQALLLEANLIKRHQPRYNVRLKDDKSYPLVQLT-DHEFPRIEITRDP-DAAATAFGP 126

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +   VE  + +L+  + +R C+D  F  R RPCL   I  C+ PCTGEI  E Y+E V
Sbjct: 127 FTNKGIVEVVVKALREVYGVRGCSDHKFSGRARPCLDHDIGLCTAPCTGEIGREAYVEDV 186

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN------HNDSI 238
              ++F +G    L + + R M +A  ++ +E A   RDRL A+           H+ + 
Sbjct: 187 ESVERFFAGETGALADPLRRRMERAAQEQSFERAASLRDRLEAVEGFHEGRGEAVHDAAD 246

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK-TDSESTNAQILSYFLRQFYTDK 297
              +D   +    + A +       GQ        L   D+   +A +L+ F+ Q+Y ++
Sbjct: 247 ARHVDVLGVSTEGDRAIVARLQSEGGQLVDRERHHLSIPDAGDGHAGVLAAFIAQYYAER 306

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+++L+ E+  +  L      +     + + VP  G +  +++ A+ NA R       
Sbjct: 307 ELPDSLLVPEDPADAELRGWLESEG----IDLRVPGAGREATLVDLAIKNARRGDYSDDP 362

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                        +  ++P    RIE +D SH  G +AVG  V+        + YR+  L
Sbjct: 363 VSA--------LAEALSIPRPE-RIEGFDVSHAHGKAAVGSNVLFVGGEAETSGYRRKKL 413

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   DD A MR ++  R  + ++  ++               PD++++DGG GQL 
Sbjct: 414 EER----NDDYANMRALVRWRALRAVEGRDDRPD------------PDLLLIDGGDGQLD 457

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+  L +   +  +  I++AK        E+  +     L  +     L+ +QR+RDE+
Sbjct: 458 AAREALSETGWD--VPAIALAK-------AEELVITPDGPLDWSSDATHLHLLQRVRDES 508

Query: 538 HRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           HRFA+  H+  R     + LD++ GIGP  +  LL+ FG+V+ I  +S E L S+EGI +
Sbjct: 509 HRFALQYHQTLRD-DVSTVLDDVPGIGPKTRTSLLRRFGSVEGIRTASVEDLRSVEGIGE 567

Query: 598 KIACKIYNHF 607
           K A  I    
Sbjct: 568 KTARTITERL 577


>gi|312873934|ref|ZP_07733970.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311090483|gb|EFQ48891.1| excinuclease ABC, C subunit [Lactobacillus iners LEAF 2052A-d]
          Length = 605

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 169/626 (26%), Positives = 293/626 (46%), Gaps = 44/626 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY  S     R   ++  IN+    
Sbjct: 9   KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L++   +P+I IT+  + P +         +G Y
Sbjct: 68  VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+  +     RPCL + + +C G C  E+SS+KY 
Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + + K FL+G     K ++ + M  A+   ++E A  +RD+L+ +         + + 
Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296
             + D F+ Y ++    IQ  F    +     T                 F+ QFY   +
Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKATDEFESFIVQFYNAKN 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           +  P  IL+ +    +SL  +   +          P +G+K+ +++ A  N+     +K+
Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKI 355

Query: 357 STEISHQMILKDFTKKFALP---HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
                + +  K   ++           RIE +D+SHI G   V  +VV  +    K++YR
Sbjct: 356 RLLELNNLKTKGAQEEIFNALGVPYGSRIESFDHSHIQGTDPVSALVVFIDGMPAKHEYR 415

Query: 414 KFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           KF L          D+    R V+ RR+S+++K                   P+++++DG
Sbjct: 416 KFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMDG 461

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPIL 527
           GK Q+ A   VL+   +   I +  + K          F      ++   + L+ +    
Sbjct: 462 GKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQAF 520

Query: 528 YFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           Y I R++DE HRFAIT HR    K +  S LDEI GIGP  +  LL++FG++K I  +S 
Sbjct: 521 YLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPRSRNKLLKNFGSLKKIREASI 580

Query: 587 ETLASIEGISKKIACKIYNHFHKNTS 612
           E L  I G++   A  +      + +
Sbjct: 581 EDLKGI-GLTLTQAQSVKLVLENSQN 605


>gi|309809263|ref|ZP_07703132.1| excinuclease ABC, C subunit [Lactobacillus iners SPIN 2503V10-D]
 gi|308170376|gb|EFO72400.1| excinuclease ABC, C subunit [Lactobacillus iners SPIN 2503V10-D]
          Length = 605

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 170/627 (27%), Positives = 292/627 (46%), Gaps = 46/627 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY  S     R   ++  IN+    
Sbjct: 9   KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L++   +P+I IT+  K P +         +G Y
Sbjct: 68  VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-EKDPEVKLTSIIKKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+  +     RPCL + + +C G C  E+SS+KY 
Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             + + K FL+G     K ++ + M  A+   ++E A  +RD+L+ +         + + 
Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQKIMLHD 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296
             + D F+ Y ++    IQ  F    +     T                 F+ QFY   +
Sbjct: 243 KLQRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKN 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSH 352
           +  P  IL+ +    +SL  +   +          P +G+K+ +++ A  N+        
Sbjct: 303 RLLPNEILVPKGVNASSLAAVLKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKI 355

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                  +  +   ++      LP+   RIE +D+SHI G   V  +VV  +    K++Y
Sbjct: 356 RLLELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEY 414

Query: 413 RKFNLHP--NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           RKF L          D+    R V+ RR+S+++K                   P+++++D
Sbjct: 415 RKFKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMD 460

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPI 526
           GGK Q+ A   VL+   +   I +  + K          F      ++   + L+ +   
Sbjct: 461 GGKIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQA 519

Query: 527 LYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
            Y I R++DE HRFAIT HR    K +  S LDEI GIGP  +  LL++FG++K I  +S
Sbjct: 520 FYLITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPRSRNKLLKNFGSLKKIREAS 579

Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612
            E L  I G++   A  +      + +
Sbjct: 580 IEDLKGI-GLTLTQAQSVKLVLENSQN 605


>gi|167750941|ref|ZP_02423068.1| hypothetical protein EUBSIR_01926 [Eubacterium siraeum DSM 15702]
 gi|167656120|gb|EDS00250.1| hypothetical protein EUBSIR_01926 [Eubacterium siraeum DSM 15702]
          Length = 585

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/605 (30%), Positives = 308/605 (50%), Gaps = 30/605 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLE 73
           M D  GR++YVGKA  L+ R+ +Y H+  +H  +   ++  I +  F VT +E++AL+LE
Sbjct: 1   MKDKTGRIIYVGKAKALKNRVTTYFHALESHNAKTRKLVENIYDFDFIVTPSELDALVLE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
            ++IK+  P++NILL+DDK + YI IT K   P +    + +     Y GPF S    ++
Sbjct: 61  CSLIKQYNPKYNILLKDDKGYNYIKIT-KEPYPRISYALNCNDKNAEYLGPFTSGFTAKQ 119

Query: 134 TINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFL 191
            ++ + R F   SC     R   + RPCL + IKRC G CTG+I  ++Y   +H A +++
Sbjct: 120 AVDEVNRIFMFPSCHKVFPRDFRKERPCLNYHIKRCMGVCTGKIKQDEYNSLIHSAIEYM 179

Query: 192 SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLY 248
             G+    E++   M +A+   ++E A   RDR+ A+  +++  D   +     D  +L 
Sbjct: 180 QNGSKASVERLTEQMYEASENLEFEKAAKLRDRINAIEKMKDGQDIFSDKTYDFDVVALA 239

Query: 249 HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--CPENILLS 306
            N  LA I    +  G  R T         E    Q+ S FL ++Y+ +    P+ I + 
Sbjct: 240 QNVELASIAVMCYRGG--RITDKMNFFIGDEYDPGQMRSDFLVEYYSARTDAIPKQIYID 297

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
           +E E++++LE  F    G+KV +TV ++GE    +  A  NA    + K+   +     L
Sbjct: 298 KEMEDSAILEEYFSALCGHKVTVTVAQRGEGLSRVLLAKQNASEYLSMKVGRTVKEINAL 357

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           +D  K   LP IP  IE YD S++   S VG M+V       K  YRKF +   +V  Q+
Sbjct: 358 EDLAKLLGLPKIPTVIESYDISNLGEDSRVGGMIVYRNGRPYKAGYRKFTIK--NVIGQN 415

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A M+ VL+RR  + +  +E           SF   PD+++LDGGKG + A Q VL  +
Sbjct: 416 DYACMQEVLQRRIQRYLDGDE-----------SFAPLPDLILLDGGKGHVHAVQQVLDSM 464

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
           NV   I +  + K  K           +GE + +N    +   +  ++DE HRF+++  +
Sbjct: 465 NVS--IPLYGLVKDDKHRTRA---IAAQGEEIQINANRKLFSLMTNIQDEVHRFSLSFQQ 519

Query: 547 KRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  KK  Y   L +I GIG  +   L++ F T + +  +SP+ +AS+  + ++ A +IY+
Sbjct: 520 QTHKKKTYELELTKIKGIGEAKALALIKHFKTKQALKDASPDEIASVAKVKEEKAKEIYD 579

Query: 606 HFHKN 610
              +N
Sbjct: 580 FIKEN 584


>gi|55981517|ref|YP_144814.1| excinuclease ABC subunit C [Thermus thermophilus HB8]
 gi|81363901|sp|Q5SI32|UVRC_THET8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|55772930|dbj|BAD71371.1| excinuclease ABC subunit C (UvrC) [Thermus thermophilus HB8]
          Length = 590

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 177/597 (29%), Positives = 277/597 (46%), Gaps = 38/597 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PGVY        VLYVGKA +L+ R+KSY H+     RI     +   + F  T  
Sbjct: 9   LPETPGVYLWK-RGEEVLYVGKAKSLRARVKSYFHAEGKARRIAE---EATGLDFIATRD 64

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEALLLEAN+IK  +P +N+LL+DDK +P++ +T+    P L   R        Y+GPF
Sbjct: 65  EVEALLLEANLIKAHRPLYNVLLKDDKHYPFLKLTN-EPFPTLLVVRRVEEDGAKYYGPF 123

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A+ +    + R F LR  +    + R  PCL + + RC  PC G+   E Y E V 
Sbjct: 124 PEAGALRRIKTLIDRLFPLRKNSGYPMKRRRYPCLNYSMGRCLAPCVGKADPEAYQEVVR 183

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQNHNDSIYNR 241
           + +  L G    L +++   M +A  + ++E A   RD++       S  Q   D     
Sbjct: 184 QVEAVLEGRVDGLLQELEAKMREAARRLEFERAAEIRDQMEALRAFFSTDQQAFDPEMGD 243

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
           +D   +  +  LA +Q      G+  G  +  ++ +  +    + ++    +    P P 
Sbjct: 244 LDFLGMARSGALAVVQLYQVRSGRILGRISRVVEKEEATDEEILWAFLRDHYLEASPLPP 303

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS--HTQKLSTE 359
            +LL    E+   L     ++ G KV++ VPK+GEK +++E A  NA  +     KL   
Sbjct: 304 LVLLPFPLEDLESLAELLKRRAGRKVELRVPKKGEKARLLELAERNARLALETELKLRER 363

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                 LK       LP  P R+E YD SH+ G + V  + V       + +YR+  L  
Sbjct: 364 RGEHPALKALQDLLGLPARPWRLEGYDISHLQGQARVFSIAVFEGGRPKRQEYRRMRLK- 422

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
                 DD A M   + RR++  +K+    +                  +DGG GQ+ AA
Sbjct: 423 ---AGNDDYAAMEEGVFRRYTGSLKDLPLPDLLL---------------IDGGVGQVRAA 464

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
              L++  +  R+ ++ +AKG       E     +G  L L +  P L  +  LRDEAH+
Sbjct: 465 ARALERAGL--RLPLVGLAKGE------EVLVTPEGRELRLPLTHPALQLLIHLRDEAHQ 516

Query: 540 FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
             +  HRKRR +  +  L  I GIG  R+RLLL+ +G ++ +  +  E LA + G+S
Sbjct: 517 NGLRYHRKRRSEELFRVLQGIPGIGEKRRRLLLERYGGLRALKEAPLEELARLPGMS 573


>gi|291531107|emb|CBK96692.1| Excinuclease ABC subunit C [Eubacterium siraeum 70/3]
          Length = 585

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/605 (30%), Positives = 308/605 (50%), Gaps = 30/605 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLE 73
           M D  GR++YVGKA  L+ R+ +Y H+  +H  +   ++  I +  F VT +E++AL+LE
Sbjct: 1   MKDKTGRIIYVGKAKALKNRVTTYFHALESHNAKTRKLVENIYDFDFIVTPSELDALVLE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
            ++IK+  P++NILL+DDK + YI IT K   P +    + +     Y GPF S    ++
Sbjct: 61  CSLIKQYNPKYNILLKDDKGYNYIKIT-KEPYPRISYALNCNDKNAEYLGPFTSGFTAKQ 119

Query: 134 TINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFL 191
            ++ + R F   SC     R   + RPCL + IKRC G CTG+I  ++Y   +H A +++
Sbjct: 120 AVDEVNRIFMFPSCHKVFPRDFRKERPCLNYHIKRCMGVCTGKIKQDEYNSLIHSAIEYM 179

Query: 192 SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLY 248
             G+    E++   M +A+   ++E A   RDR+ A+  +++  D   +     D  +L 
Sbjct: 180 QNGSKASVERLTEQMYEASENLEFEKAAKLRDRINAIEKMKDGQDIFSDKTYDFDVVALA 239

Query: 249 HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--CPENILLS 306
            N  LA I    +  G  R T         E    Q+ S FL ++Y+ +    P+ I + 
Sbjct: 240 QNVELASIAVMCYRGG--RITDKMNFFIGDEYDPGQMRSDFLVEYYSARTDAIPKQIYID 297

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
           +E E++++LE  F    G+KV +TV ++GE    +  A  NA    + K+   +     L
Sbjct: 298 KEMEDSAILEEYFSALCGHKVTVTVAQRGEGLSRVLLAKQNASEYLSMKVGRTVKEINAL 357

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           +D  K   LP IP  IE YD S++   S VG M+V       K  YRKF +   +V  Q+
Sbjct: 358 EDLAKLLGLPKIPTVIESYDISNLGEDSIVGGMIVYRNGRPYKAGYRKFTIK--NVIGQN 415

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A M+ VL+RR  + +  +E           SF   PD+++LDGGKG + A Q VL  +
Sbjct: 416 DYACMQEVLQRRIQRYLDGDE-----------SFAPLPDLILLDGGKGHVHAVQQVLDSM 464

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
           NV   I +  + K  K           +GE + +N    +   +  ++DE HRF+++  +
Sbjct: 465 NVS--IPLYGLVKDDKHRTRA---IAAQGEEIQINANRKLFSLMTNIQDEVHRFSLSFQQ 519

Query: 547 KRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  KK  Y   L +I GIG  +   L++ F T + +  +SP+ +AS+  + ++ A +IY+
Sbjct: 520 QTHKKKTYELELTKIKGIGEAKALALIKHFKTKQALKDASPDEIASVAKVKEEKAIEIYD 579

Query: 606 HFHKN 610
              +N
Sbjct: 580 FIKEN 584


>gi|237752277|ref|ZP_04582757.1| excinuclease abc subunit c [Helicobacter winghamensis ATCC BAA-430]
 gi|229375766|gb|EEO25857.1| excinuclease abc subunit c [Helicobacter winghamensis ATCC BAA-430]
          Length = 618

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 193/634 (30%), Positives = 313/634 (49%), Gaps = 55/634 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQI 55
            +++P   GVY   D  G++LYVGKA NL+ RIKSY         + N + RIT M+SQI
Sbjct: 16  LKKIPNSSGVYHYFDTQGKLLYVGKAKNLKHRIKSYFRFTPNLAPAPNLSPRITQMVSQI 75

Query: 56  NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS 115
            ++R+ V   E +AL+LE ++IK+LKP++N+LLRDDK++PY+ +  +   P +   R   
Sbjct: 76  AHLRYIVVENENDALILENSLIKQLKPKYNVLLRDDKTYPYLCVDLQEDFPRILLTRKIF 135

Query: 116 TIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
             QG  YFGPF+S       ++S+   F L        ++  + CL +QI RC  PC G+
Sbjct: 136 KKQGLRYFGPFSSG--ARDLLDSIYEIFPLAQ--KESCKNGKKACLFYQIHRCLAPCEGK 191

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           IS++ Y + +  A + +      +   + + M Q +    +E A+I RDR+A + ++   
Sbjct: 192 ISTKDYAKILQNALECVENPKK-ILAPLEQKMLQLSQNLRFEEALILRDRIAKIKNLTPL 250

Query: 235 NDSIYNR---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291
           +   +     +D F+L      A +   F   G+   + T  LK++    +  I    L 
Sbjct: 251 SSVDFANLVDLDIFALVCEDKRAVLVKFFMRNGKIISSATQNLKSELGFDSLSIYKQALI 310

Query: 292 QFYTDKPC--PENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
             Y++     P+ IL+  +  E T  LE    ++ G KV+I  PK G+K+++ E A+ N 
Sbjct: 311 NHYSNTLPLVPKQILIPFDLGESTQELEYFLQEKVGKKVQIHFPKSGDKKRLCELAIQNG 370

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
                     +  ++ I       F L + P R E++D SH  G   VG MVV     F+
Sbjct: 371 KE---ILRLEQNDNEEIFNALKTLFCLQNTPYRFEVFDTSHHKGTQCVGAMVVYDGLDFI 427

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YR +      ++ +D+   MR +L RR     K                 S PD+ +
Sbjct: 428 KESYRHY-----LLEGKDEYTQMREMLTRRIQDFQKE----------------SPPDLWV 466

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLN 521
           LDGG GQ++ A+ +L+   V   + +I IAK        R+ G   +    +  +   L+
Sbjct: 467 LDGGAGQINLAKELLESAGV--NLEVIGIAKEKIDSKTHRAKGGAKDILRDENLKEYRLS 524

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKM 580
           M D  L F+Q+LRDEAHRFAIT H+K+++K   +S L  I GIG   +  LL  FG+ + 
Sbjct: 525 MSDKRLQFLQKLRDEAHRFAITFHQKQKQKTMQHSKLLSIKGIGKAIQNKLLAYFGSFEA 584

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           I ++  + L  +  +SK  A  ++N      ++ 
Sbjct: 585 IEKADLDELEKV--LSKTFAKSVFNALRSFQNNA 616


>gi|323342862|ref|ZP_08083094.1| excinuclease ABC subunit C [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463974|gb|EFY09168.1| excinuclease ABC subunit C [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 590

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/616 (27%), Positives = 285/616 (46%), Gaps = 53/616 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P  PG Y M +  G ++YVGKA  L+ R+ SY     H H+ T M+ QI++  F 
Sbjct: 9   KLKRLPMEPGCYLMKNKNGEIIYVGKAKKLKNRVSSYFTGA-HDHKTTRMVRQIDDFEFI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-DSSTIQGS 120
           +T TE E+L+LE N+IK  +P+FNI+  DDKS+PY+ I  + K P +   R    + Q  
Sbjct: 68  ITSTEKESLILEINLIKEHRPQFNIIFMDDKSYPYLKIPREGK-PEVLVARDRKQSKQFH 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+    A       L  +                      I           + E+ 
Sbjct: 127 YFGPYPDATAARDMARLLNDSVPTGDTLLPN---------TLAIYSAFNRTGKRYTPEEL 177

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
             +       L+G     K+++ R M +A+   ++E A +++++L AL +I +     ++
Sbjct: 178 NVWRQNVMSILNGNIKPFKDELERKMLEASQSLNFELAQVYKEKLHALDYIGDKQQVQFS 237

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
              R D F   + +    I   F   G+                       F+ QFY ++
Sbjct: 238 LNERFDLFHFAYYQGYIAIVGLFVRGGRLLERSMAVEACM--EEPLDAFVSFIAQFYENQ 295

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL- 356
           P P+ I + +      L ++   +          P +G+K+ ++E    NA +    +  
Sbjct: 296 PVPKTIYVPDLVNAEELGDVLGAEVKV-------PLRGKKKTLLEITQKNAQQQLDDQFS 348

Query: 357 ---STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
                +      L+D +    +  I  RIE++DNSHI G  AV   VV  +    KNQYR
Sbjct: 349 ILRERQQFKDEALRDLSAALGMSSIIHRIEVFDNSHISGAFAVSACVVYDDGEPNKNQYR 408

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++ LH    +  DD A M+ VL RR+ +L++  +                PD++++DGGK
Sbjct: 409 RYKLH----QGNDDVASMKEVLYRRYFRLMRESK--------------PMPDLILVDGGK 450

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            QL+AA  VL  L ++ R  + S+ K  +          + G  + +N    +  F+ ++
Sbjct: 451 PQLNAALEVLSDLELDLR--VCSLVKDDRHRTHA--LMREDGTLITINKTSSLFNFLMQM 506

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           +DE HRF IT HR  RKK    S LDE++G+G +R++ L + FG++K I  +S ETL ++
Sbjct: 507 QDEVHRFVITYHRNLRKKAMTRSILDEVSGLGKVRQKELYKKFGSLKNIRAASLETLQTV 566

Query: 593 EGISKKIACKIYNHFH 608
             + + +A  +Y+  H
Sbjct: 567 --LPEDVAGDLYDILH 580


>gi|225619074|ref|YP_002720300.1| Excinuclease ABC, C subunit [Brachyspira hyodysenteriae WA1]
 gi|225213893|gb|ACN82627.1| Excinuclease ABC, C subunit [Brachyspira hyodysenteriae WA1]
          Length = 613

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 174/627 (27%), Positives = 295/627 (47%), Gaps = 44/627 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P+  GVY M D    ++Y+GKA +L+KR+ SY +++N   + T ++  I +I + 
Sbjct: 12  KLKRIPDKSGVYFMKDSKSEIIYIGKAKSLKKRVSSYFNNSNKDAKTTALVEHIRDIEYI 71

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-- 119
           +T  EVEAL+LEA MI++ KP +NILL+D KSFP+I IT++H  P + K R+        
Sbjct: 72  LTENEVEALILEAEMIRKHKPHYNILLKDQKSFPFIAITNEH-FPRVIKARNVIDKDNAR 130

Query: 120 ---SYFGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
               Y+GP+ + +  +  +  +   F LR C  D   +   RPCL   I +C+ PC   I
Sbjct: 131 KYKKYYGPYVAAERADNIVKFIIDNFKLRRCKYDFPLKRAIRPCLYHHIGKCTAPCADLI 190

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
             E Y + + +A   L G    L  ++ + M     K ++E+A   RD++  L +I    
Sbjct: 191 KEEDYDKTIDDAIMVLEGNVDELVARLKQEMFVHAEKLEFEAAKDLRDKIDLLKYITVEQ 250

Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA--------- 283
                  + +D    Y       I       G+     TF +++ ++             
Sbjct: 251 SIYIPESDDIDIIGAYGENGNYTIVILSVKGGKLADRKTFSMQSPNDEDYYNENGMSKYS 310

Query: 284 QILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
           +ILS F  Q+YT        + S +     +  I  + +      + +     ++ ++  
Sbjct: 311 EILSAFFTQYYTHANLIPASI-STDFPLNDVDIIKDYLKQVSGRDVDIKLDKSRKGLMAI 369

Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
           A  NA     +K         I +   + F L   P  IE +D +HI G   +  MV   
Sbjct: 370 ANENAKHLFKEKALIREVPLGITR-LQEIFKLKKAPSIIESFDIAHIQGSYTMAGMVRFV 428

Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463
                   YR FN+    V   DD A ++  + RR+ +L                   ++
Sbjct: 429 NGVSDNKNYRIFNMKT--VTGIDDFASIKEAVYRRYKRLRDEN--------------LTF 472

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PD++++DGGKGQL++A   LK+L+++ +  I+++AK  +     E +   + E + L+  
Sbjct: 473 PDLILIDGGKGQLNSAIEALKELDIKGQ-PIMALAKKFE-----EIYLPNRNEPVQLSDN 526

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
           +P   F+Q++RDE HR+  ++H K+R +    S L+ I GIG      L   F  +  I 
Sbjct: 527 EPARLFLQKVRDETHRWVNSSHGKKRSREMVRSELESIEGIGKKTIEKLYSHFINIDNIK 586

Query: 583 RSSPETLASIEGISKKIACKIYNHFHK 609
            +S E++ +I GIS K A  IY+HFHK
Sbjct: 587 NASFESIRNIPGISYKAANNIYDHFHK 613


>gi|268608251|ref|ZP_06141978.1| excinuclease ABC subunit C [Ruminococcus flavefaciens FD-1]
          Length = 606

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/615 (26%), Positives = 292/615 (47%), Gaps = 26/615 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
            + ++   PGVY M +    ++Y+GKA NL  R+ SY   N +HT ++  M+S + +  F
Sbjct: 11  KTSKLTVSPGVYIMKNKKSDIIYIGKAKNLHNRVSSYFRENPDHTPKVAAMVSNVYDYDF 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E EALLLE ++IK+ KP++NILL+DDK + YI I+   + P +   +++    G 
Sbjct: 71  IVTDSEYEALLLECSLIKQHKPKYNILLKDDKGYHYIRIS-DEEYPRITNEKNTIQ-PGR 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           Y GP+ S    ++ ++   R F L +C     +   + RPCL + IK C G C G IS E
Sbjct: 129 YLGPYTSGFITKEAVSEANRVFMLPTCHRKFPQDIGKGRPCLNYHIKMCMGVCRGRISRE 188

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   V +A +F+  G+    E++   MNQA    ++E A + RDR+ A+         I
Sbjct: 189 EYNNAVEQAVEFIRSGSAQSVERMEEEMNQAAENLEFEKAAMLRDRITAVKKAAEKQKMI 248

Query: 239 ---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               +  D   +    +   +    +   +      F L+      +  +  +    +Y 
Sbjct: 249 NSGVDSADIIGIAEYYDGVYVSVLMYRENRLYDKAVFELEKPDGVEDL-LSQFMQNFYYG 307

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P+ +++    E+  L+     +Q G + K+ VP++G + +++  A  N+      K
Sbjct: 308 KQDVPKTVIIGHMPEDAELITAMMEQQSGRRTKLHVPQKGRQLELLRLAKNNSAEYAAIK 367

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                   + L+   K   L   P+ IE YD S++   S V  MVV  +   +K  Y++F
Sbjct: 368 NDRTGKEVIALEQLAKSLGLAKPPRYIEAYDISNLSSESMVAGMVVFEDGRPLKKAYKRF 427

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +   ++  Q+D   M  VL+RR   ++  + +           F   PD+++LDGGKG 
Sbjct: 428 TVKEQEL--QNDYGSMHEVLKRRLMHIVNQDGD---------EYFTRTPDLILLDGGKGH 476

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++A   +L++L +   I +  + K  K            G  + +N        + R++D
Sbjct: 477 VNAVAPILRELGL--NIPLFGMVKDNKHRTRA---IATGGREIQINGLRSAFDLVTRIQD 531

Query: 536 EAHRFAITT-HRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HR+++   H K +KK   S L  + GIG  +   L+  + T   + +++P+ LA   G
Sbjct: 532 EVHRYSVAFMHSKHKKKTYSSELLTVKGIGEKKAAKLMMKYKTRANLLQATPDELAVTAG 591

Query: 595 ISKKIACKIYNHFHK 609
           ++  +A +++   H 
Sbjct: 592 VNITVAEELWRILHN 606


>gi|291544855|emb|CBL17964.1| Excinuclease ABC subunit C [Ruminococcus sp. 18P13]
          Length = 606

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/614 (26%), Positives = 294/614 (47%), Gaps = 25/614 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            +  +   PGVY M   +G+++Y+GKA NL+KR+ SY   + NHT ++  M+SQ+ +  +
Sbjct: 11  KTAALTGSPGVYIMKQQSGQIIYIGKAKNLKKRVTSYFCRTPNHTPKVAKMVSQVYDYDY 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E EAL+LE ++IK+ KP++NILL+DDK + YI I+     P +   + ++   G 
Sbjct: 71  IVTDSEYEALVLECSLIKQHKPKYNILLKDDKGYFYIKIS-DPPYPKITAEKQNTRKDGV 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           Y GP+ S     +T++ + R F L +C     +   + RPCL + I +C G C G++ ++
Sbjct: 130 YLGPYTSSFVTRETVDEVNRVFKLPTCHRRFPQDFRKQRPCLNYHINQCMGLCRGKVDAQ 189

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            Y   + EA  ++  G+    E++   M +A  +  +E A   RDR+ A+    +     
Sbjct: 190 TYRALIDEAVAYIRSGSEQSVERLTAQMEEAAEQLQFERAAQLRDRIKAIRKAGDSQKII 249

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D  +       + +    +  G+     +F    D+E+T   +  +  + +  
Sbjct: 250 DPDLADCDLIAAVSGGQESAVSVLMYRNGRLADKASFTF-HDAENTVQLLEEFVPQFYRE 308

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P ++LL +E  +  LL     +Q G+ V +   ++G+  K ++ A  NA  + +  
Sbjct: 309 RTDIPRHVLLEQEITDQELLAQLLTEQAGHPVHLETRQRGDAYKRLKMAKNNAAEAISLG 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                   + L++  +   +   P  IE YD S++   + V  MVV      +K  Y++F
Sbjct: 369 SDRTAKELLALEELARLLGMEKPPLYIEAYDISNLSSTAMVAGMVVFENGRPLKKAYKRF 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           ++  N +  Q+D A M  VLERRF +     +            F   PD+++LDGGKGQ
Sbjct: 429 SVRENQI--QNDYACMHEVLERRFREYKAATDE----------GFARLPDLILLDGGKGQ 476

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++A   VL++L +   + +  + K  K            G  + +N R      + R++D
Sbjct: 477 VNAVTPVLRELGIH--VPVYGMVKDNKHRTRA---IAYGGGEISMNSRQAAFQLLTRIQD 531

Query: 536 EAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           E HRF++     R K      L ++ GIG  + + L+ ++ T + +  +S + LA   G+
Sbjct: 532 EVHRFSVAYMHSRHKHTFGLSLTQVRGIGEKKAQKLILTYKTKEALKAASRDALAKTAGV 591

Query: 596 SKKIACKIYNHFHK 609
           + + A  +Y    +
Sbjct: 592 TGETADALYQFIQE 605


>gi|313125020|ref|YP_004035284.1| excinuclease ABC subunit c [Halogeometricum borinquense DSM 11551]
 gi|312291385|gb|ADQ65845.1| Excinuclease ABC subunit C [Halogeometricum borinquense DSM 11551]
          Length = 581

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 180/610 (29%), Positives = 293/610 (48%), Gaps = 51/610 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVYQ LD    VLYVGKA +++ R++SY  ++    RI  M+ +   I F VT 
Sbjct: 12  DLPTDPGVYQFLDG-DTVLYVGKAVDIRARVRSY--ADPRGERIRQMVERAGAIDFAVTD 68

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLEAN++KR +PR+N+ L+DDKS+P + +T  H +P +   RD      + FGP
Sbjct: 69  TETQALLLEANLVKRHQPRYNVRLKDDKSYPLVQLT-DHPVPRIEVTRDPEE-GATVFGP 126

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +     VE  + +L+ T+ +R C+D  + +R RPCL +++  C+ PCTGEI+   Y E V
Sbjct: 127 YTDKGRVETVVKALRETYGVRGCSDHKYANRDRPCLDYEMGLCTAPCTGEIAESDYREDV 186

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
               +F  G    L + + R M +A   E++E A   RD+L A+       +        
Sbjct: 187 ESIVRFFEGETGVLADPLRRTMEEAAQAENFERAANARDKLEAVESFHGAGEEAVTSQSD 246

Query: 243 ----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL-SYFLRQFYTDK 297
               D   +    + A +       GQ        L        +  + S FL Q+Y ++
Sbjct: 247 ERAVDVLGVAIEGDAATVARLHSERGQLVDRSRHRLDAPEGGERSAAVLSAFLTQYYAER 306

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ ILLSE  ++  ++E    +     V + VP  G + K+I+ AL NA R       
Sbjct: 307 ELPDAILLSERPDDDDVVEWLNVEG----VSVRVPGAGREAKLIDLALKNARRGP----- 357

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              +    L    ++  +P    RIE +D SH  G + VG  V   +    K  YR+  L
Sbjct: 358 ---TRDDGLAVLAERLDIPRPS-RIEGFDVSHAQGKAVVGSDVCFVDGSAEKADYRRKKL 413

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   DD   MR ++  R  + ++  ++               PD++++DGG GQL 
Sbjct: 414 PER----NDDYENMRALIRWRAERAVEGRDDRPD------------PDLLLIDGGDGQLG 457

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+  L ++  +  +  I++AK        E+  +            P L+ +QR+RDEA
Sbjct: 458 AARDALTEVGWD--VPAIALAKD-------EELVITPDGVYDWPSDAPHLHVLQRVRDEA 508

Query: 538 HRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           HRFA+  H+  R     + LD++ G+G   +R LL+ FG+V+ +  ++   L  + G+ +
Sbjct: 509 HRFAVQYHQTLRD-DVRTVLDDVPGVGEKTRRALLRRFGSVENVRAATTADLTDVPGVGE 567

Query: 598 KIACKIYNHF 607
           K A ++    
Sbjct: 568 KTATELKQRL 577


>gi|291333596|gb|ADD93289.1| excinuclease ABC subunit C [uncultured archaeon MedDCM-OCT-S09-C13]
          Length = 575

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/610 (27%), Positives = 274/610 (44%), Gaps = 48/610 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY      GRVLYVGKA  L +RI+SY  +N     I  ++++ +++   VT 
Sbjct: 9   DLPASPGVYLFKTNEGRVLYVGKATRLNERIRSYFATNPDRQMIPELVARADDVECIVTT 68

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           T  EAL+LE  +I+  KPRFN +L+DDKS+PY+++T++   P +   R        + GP
Sbjct: 69  TPQEALILERQLIREHKPRFNSMLKDDKSYPYLVLTNEE-FPRIMYTRHPPKKAHRW-GP 126

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +  A ++ +  L+R F +R C + + +     CL   I  C+GPC        Y E V
Sbjct: 127 FPNAGAAKQVMQLLRRHFGIRDCKELLPQG----CLAMHIGLCTGPCI---DGTGYGEQV 179

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
              KK L G    L E++   M+Q + +  +E A  +RD + ++      +      Y  
Sbjct: 180 RAVKKILDGEATELLEELGGKMDQCSQEMQFERAGYYRDLIRSIRTTIGQHVVSSKLYRD 239

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D        +LA +       G  +G   +      +    + +S F+ + Y  +    
Sbjct: 240 CDAIGFAEQGDLAALVVLHADDGVVKGQEVWPYVHRGD--IGETVSRFIAEHYLHRR--P 295

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI- 360
             LL         L+    ++ G  V++  P +G+   +   A  NA    T+  +    
Sbjct: 296 PRLLLTPTPLLDGLQSWLDERRGSAVEVRTPMRGDMVTLRTLADQNAEIQVTRLANKSSG 355

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S +    D             +  +D + + G   VG  VV+      K +YR + +  +
Sbjct: 356 SLEQRAADEAATLLNMEQMNHVVCFDMAQLQGDERVGASVVMRNGRPAKKEYRTYIVKGD 415

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
                DD  MM  V+ER   +  +                  WPD+++LDGG+  L   +
Sbjct: 416 ---AMDDLRMMSEVVERWLKRQEE------------------WPDLLLLDGGETHLKTIR 454

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L +  V +R  + ++AK        E    K  + +VL+ R  I       RDEAHRF
Sbjct: 455 AMLDEHGVHDRFELAALAKRE------ETLHRKGNDPIVLDRRGRIFV---HARDEAHRF 505

Query: 541 AITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
             T HRKRRKK+    PL+++ G+G  + + LL+ FG  + I+ +S E L ++ GI   +
Sbjct: 506 VNTFHRKRRKKSRLGDPLEDVLGLGAKKLQSLLRHFGGRQGINNASIEDLKTVPGIGPSL 565

Query: 600 ACKIYNHFHK 609
           A +I+   H+
Sbjct: 566 AERIHESLHR 575


>gi|255349189|ref|ZP_05381196.1| excinuclease ABC subunit C [Chlamydia trachomatis 70]
 gi|255503726|ref|ZP_05382116.1| excinuclease ABC subunit C [Chlamydia trachomatis 70s]
          Length = 598

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 181/615 (29%), Positives = 291/615 (47%), Gaps = 42/615 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            + +   PGVY M D  G VLYVGKA NL+ R+ SY+     +  RI  ++ +  +I   
Sbjct: 8   LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRERIPFLMKKTTDIDTI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117
           V   E EA+LLE N+IK+ +PR+N+LL+DDK+F  + ++ +H  P +   R  +      
Sbjct: 68  VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +   FGP+ S +A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S 
Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            +Y E + +A  FL G   +    + + + +A+ ++ +E A      L  +         
Sbjct: 188 TEYQETLDKAVLFLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHV 247

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                  +D   LY   +LA +     + G+  G   F    +++  +A   S+ L+ + 
Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P+ I +    +   L    +        KI  PK    ++++  A  NA      
Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                 S     ++    F L   P RIE YDN+H+ G   VG  +V     F   QYR 
Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENGLFSPKQYRT 420

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F++        DD A    VL RRF  L                     P+++++DGG+ 
Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530
           Q   AQ +L++LN+   IT+++IAK      +S   EK F +   + ++L+    IL F 
Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           Q LRDEAHRFAI  +RK+  KA  +   +I GIG ++ + LLQ F + K +  +S E L 
Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577

Query: 591 SIEGISKKIACKIYN 605
           +++GI+ K   +I  
Sbjct: 578 TVQGITAKDIQRIQE 592


>gi|15605524|ref|NP_220310.1| excinuclease ABC subunit C [Chlamydia trachomatis D/UW-3/CX]
 gi|76789533|ref|YP_328619.1| excinuclease ABC subunit C [Chlamydia trachomatis A/HAR-13]
 gi|8134795|sp|O84796|UVRC_CHLTR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|92058692|sp|Q3KKQ1|UVRC_CHLTA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|3329256|gb|AAC68386.1| Excinuclease ABC, Subunit C [Chlamydia trachomatis D/UW-3/CX]
 gi|76168063|gb|AAX51071.1| excinuclease ABC subunit C [Chlamydia trachomatis A/HAR-13]
 gi|296437271|gb|ADH19441.1| excinuclease ABC subunit C [Chlamydia trachomatis G/11222]
 gi|297748919|gb|ADI51465.1| Excinuclease ABC subunit C [Chlamydia trachomatis D-EC]
 gi|297749799|gb|ADI52477.1| Excinuclease ABC subunit C [Chlamydia trachomatis D-LC]
          Length = 598

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 180/615 (29%), Positives = 291/615 (47%), Gaps = 42/615 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR-ITHMISQINNIRFT 61
            + +   PGVY M D  G VLYVGKA NL+ R+ SY+     + + I  ++ +  +I   
Sbjct: 8   LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRKRIPFLMKKTTDIDTI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117
           V   E EA+LLE N+IK+ +PR+N+LL+DDK+F  + ++ +H  P +   R  +      
Sbjct: 68  VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +   FGP+ S +A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S 
Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            +Y E + +A  FL G   +    + + + +A+ ++ +E A      L  +         
Sbjct: 188 TEYQETLDKAVLFLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHV 247

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                  +D   LY   +LA +     + G+  G   F    +++  +A   S+ L+ + 
Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P+ I +    +   L    +        KI  PK    ++++  A  NA      
Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                 S     ++    F L   P RIE YDN+H+ G   VG  +V     F   QYR 
Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENGLFSPKQYRT 420

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F++        DD A    VL RRF  L                     P+++++DGG+ 
Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530
           Q   AQ +L++LN+   IT+++IAK      +S   EK F +   + ++L+    IL F 
Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           Q LRDEAHRFAI  +RK+  KA  +   +I GIG ++ + LLQ F + K +  +S E L 
Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577

Query: 591 SIEGISKKIACKIYN 605
           +++GI+ K   +I  
Sbjct: 578 TVQGITAKDIQRIQE 592


>gi|322368185|ref|ZP_08042754.1| excinuclease ABC subunit C [Haladaptatus paucihalophilus DX253]
 gi|320552201|gb|EFW93846.1| excinuclease ABC subunit C [Haladaptatus paucihalophilus DX253]
          Length = 577

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 182/609 (29%), Positives = 286/609 (46%), Gaps = 49/609 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   GVYQ L     V YVGKA +L+ R++SY  ++  + RI  M+ + + + F VT 
Sbjct: 12  ELPRESGVYQFL-EDETVRYVGKAVDLRARVRSY--ADPRSDRIGRMVERADALDFAVTD 68

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +T  H+ P +   RD      + FGP
Sbjct: 69  TETQALLLEANLIKRYQPRYNVRLKDDKSYPLVQVT-GHEFPQIEITRDPDRTGATVFGP 127

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +   VE  + +L+ T+ +R C+D  F +R RPCL   I  C+ PCT EI  E Y+  V
Sbjct: 128 FTNKSTVETVVKALRETYGIRGCSDHKFANRDRPCLDHDIGLCTAPCTNEIGREAYLGDV 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN------HNDSI 238
              ++FL G    L   + R M  A    ++E A   RDRL A+            + + 
Sbjct: 188 ESVERFLGGEVDVLARPLRREMEAAAQNREFERAANLRDRLEAVESFHGGDAGAISSRTD 247

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D          A +       GQ        L        A +L  F+ QFY ++ 
Sbjct: 248 ERTVDVLGAAVEGERATVARLHSERGQLVDRDHHSLSVPDGDDAAAVLGGFIPQFYAERE 307

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ +LLSE  ++  +L+    +  G +V       G +  +++ AL NA R        
Sbjct: 308 LPDALLLSERPDDADVLDWLDAEGVGTRVPG----AGREATLVDLALKNARRG------- 356

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
              +   L+      +LP    RIE +D SH  G S VG  VV+      K  YR+  L 
Sbjct: 357 -AGNPDELRALADALSLPSAE-RIEGFDVSHAQGSSVVGSNVVLVGGSPEKRDYRRKKLT 414

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD A M  ++  R  + ++  +                PD++++DGG+GQL A
Sbjct: 415 EK----NDDYANMHDLVRWRAKRAVEGRDERPD------------PDLLLIDGGEGQLDA 458

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+  L  +  +  +  + +AK        E+  V            P L+ +QR+RDEAH
Sbjct: 459 AREALTDIGWD--VPAVGLAK-------AEEIVVTPNGTYNWPNDAPHLHVLQRVRDEAH 509

Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           RFA+  H+  R     + LD+++G+GP  +R L + FG++  I  +S   L  ++GI +K
Sbjct: 510 RFAVQYHQTLRD-DVSTALDDVSGVGPQTRRKLFRRFGSLDGIRAASDAELRDVDGIGEK 568

Query: 599 IACKIYNHF 607
               +    
Sbjct: 569 TVTALRRRL 577


>gi|297171681|gb|ADI22675.1| nuclease subunit of the excinuclease complex [uncultured
           Gemmatimonadales bacterium HF0500_22O06]
          Length = 552

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/572 (28%), Positives = 270/572 (47%), Gaps = 37/572 (6%)

Query: 51  MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110
           M+  ++++   +  +E EAL+LEAN+IK  +PRFNILLRDDK +PYI +T K   P +Y 
Sbjct: 1   MVRLVDSVDSIIVGSEAEALILEANLIKEHQPRFNILLRDDKKYPYIKVTVKEPFPRVYV 60

Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSG 169
            R        YFGP+ SV+ + + +  + R   +RSC  S+ +    RPCL + I+RC  
Sbjct: 61  TRRIVNDGSRYFGPYTSVNQMRQALEVINRLHTVRSCRYSLPKDSPDRPCLDYHIQRCKA 120

Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL---A 226
           PC G  +  +Y   + +    L G    ++ +I   M +A+   D+E A   RD +    
Sbjct: 121 PCVGLQTESEYRGMIDDILNILEGDTEEIRSQIEARMMEASGGLDFELAAKMRDVIAGLD 180

Query: 227 ALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286
            ++  Q  + +    +D   L  +  LA         G      T          N  +L
Sbjct: 181 VIAREQRVHRTQGGNIDIVGLARDDKLAAGVVLKVRSGLLLSRVTQRFGEILNEKNQDLL 240

Query: 287 SYFLRQFYTDK------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340
           S  + + Y           P  +LL     +  LLE    +  GY+V++T+P++GEK ++
Sbjct: 241 SSLVSRHYLGGGDEGMVDLPRTVLLPNSFSDQDLLEEILTEAAGYRVRLTIPQRGEKLRL 300

Query: 341 IEQALINAHRSHTQKL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396
            E A +NA +    ++      +   +  L     +  L  +P+ +  +D SH+ G   V
Sbjct: 301 SELAEVNARQVLEDQVIALAYADNRAEDALFSLQDELDLKVVPRLMVCFDVSHMQGKETV 360

Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456
              VV       +  YR   +  +     DD   M+  + R F + +             
Sbjct: 361 ASAVVFQNGEPSRADYRHMRIKGD--WGNDDFQSMQEAVYRYFRRRLDEG---------- 408

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
                  PD+V++DGGK QLSAAQ     L++   I +I++AK  +       F   K  
Sbjct: 409 ----TPLPDLVVIDGGKPQLSAAQNAFAYLDLPG-IAVIALAKKEEA-----VFAPGKKT 458

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSF 575
            L L+ R+  L+ +QR+RDEAHRFA+  +RK R K+   S L +I GIG  R+ +LL+ F
Sbjct: 459 PLRLDRRNRALHILQRIRDEAHRFAVRYNRKLRTKRTLRSELGDIPGIGLRRQTVLLRRF 518

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           G++K +  ++ E +A + G SK +A ++  + 
Sbjct: 519 GSLKGVKSATKEEIARVPGFSKALASRVLTYL 550


>gi|139439822|ref|ZP_01773199.1| Hypothetical protein COLAER_02230 [Collinsella aerofaciens ATCC
           25986]
 gi|133774837|gb|EBA38657.1| Hypothetical protein COLAER_02230 [Collinsella aerofaciens ATCC
           25986]
          Length = 601

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/603 (27%), Positives = 280/603 (46%), Gaps = 49/603 (8%)

Query: 35  IKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSF 94
           ++ Y+   +   +I  M+  + +  + V  TE EAL+LE N+I +  P FN+ L+DDKS+
Sbjct: 1   MRQYVTLQDERQKIPLMMQLVASFDYIVVETEHEALVLERNLIGQYHPYFNVDLKDDKSY 60

Query: 95  PYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH 154
           P+I IT     PA+   R+       YFGP+    A  +TI++L++   + S + + +R 
Sbjct: 61  PFIAITKSDLFPAIKYTRERHKPGTRYFGPYTDSRAARETIDTLRKVIPICSASCAEWRR 120

Query: 155 ---------------------RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
                                  RPC  + + R  G C G IS   Y + V   ++FLSG
Sbjct: 121 CRRIVESHKGEEDIVNMICAQNGRPCFDYHVGRGPGACVGAISPADYAKNVKRVERFLSG 180

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
              ++ +++   M +A    D+E A   + RL  +  + +    ++     +D    Y  
Sbjct: 181 HRKDVVDELTSEMTEAAETLDFERAARVKRRLEVIRGLDDRQQVVFPSSVDIDVIGFYRE 240

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPENILLSEEA 309
           + ++         G+   TC F L    +    ++ S FL+++Y +    P  I LS E 
Sbjct: 241 ETISAACVFVVREGRTVRTCEFILDKGLDVDEEELQSGFLKRYYDETADIPAEINLSVEL 300

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST----EISHQMI 365
           E+   L      +      +  P++GEK ++++ A  NA  +  + +      +      
Sbjct: 301 EDAEALGEWLAGKRERSCHLHRPQRGEKHRLLDMASKNARHALMRYMMRTGYADDRTNQA 360

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L +     ALP  P RIE +D S + G   V  MVV       K QYR+F +    +   
Sbjct: 361 LLELESALALPAPPLRIECFDISTLHGTFTVASMVVFTNGRADKGQYRRFKIQAE-LDEA 419

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           +D   M  VL RR+              +  +  F S PD++++DGGK QL+AA   L+ 
Sbjct: 420 NDFVSMSEVLGRRY-----------APERMADERFGSRPDLLVVDGGKPQLTAAIKQLEA 468

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           L ++  I +  +AK  +     E F       +VL      LY I+++RDE+HRFAIT H
Sbjct: 469 LGLD--IPVCGLAKADE-----EVFVPWDETPVVLPTGSASLYLIKQVRDESHRFAITFH 521

Query: 546 RKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R+ R KA   S LD++ G+GP RKR +++ FG++K +  +S + +A + G+   +A  ++
Sbjct: 522 RELRDKAMTVSVLDDVPGVGPTRKRAIMRHFGSMKRLRAASEQEIAEVRGVPADVAKAVH 581

Query: 605 NHF 607
              
Sbjct: 582 EAL 584


>gi|255507407|ref|ZP_05383046.1| excinuclease ABC subunit C [Chlamydia trachomatis D(s)2923]
 gi|296435415|gb|ADH17593.1| excinuclease ABC subunit C [Chlamydia trachomatis E/150]
 gi|296439132|gb|ADH21285.1| excinuclease ABC subunit C [Chlamydia trachomatis E/11023]
          Length = 598

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/615 (29%), Positives = 291/615 (47%), Gaps = 42/615 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            + +   PGVY M D  G VLYVGKA NL+ R+ SY+     +  RI  ++ +  +I   
Sbjct: 8   LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRERIPFLMKKTTDIDTI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117
           V   E EA+LLE N+IK+ +PR+N+LL+DDK+F  + ++ +H  P +   R  +      
Sbjct: 68  VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +   FGP+ S +A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S 
Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            +Y E + +A  FL G   +    + + + +A+ ++ +E A      L  +         
Sbjct: 188 TEYQETLDKAVLFLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHV 247

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                  +D   LY   +LA +     + G+  G   F    +++  +A   S+ L+ + 
Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P+ I +    +   L    +        KI  PK    ++++  A  NA      
Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                 S     ++    F L   P RIE YDN+H+ G   VG  +V     F   QYR 
Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENALFSPKQYRT 420

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F++        DD A    VL RRF  L                     P+++++DGG+ 
Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530
           Q   AQ +L++LN+   IT+++IAK      +S   EK F +   + ++L+    IL F 
Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           Q LRDEAHRFAI  +RK+  KA  +   +I GIG ++ + LLQ F + K +  +S E L 
Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577

Query: 591 SIEGISKKIACKIYN 605
           +++GI+ K   +I  
Sbjct: 578 TVQGITAKDIQRIQE 592


>gi|284166895|ref|YP_003405174.1| excinuclease ABC subunit C [Haloterrigena turkmenica DSM 5511]
 gi|284016550|gb|ADB62501.1| excinuclease ABC, C subunit [Haloterrigena turkmenica DSM 5511]
          Length = 597

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/631 (28%), Positives = 296/631 (46%), Gaps = 69/631 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVYQ     G  LYVGKA +L+ R++SY  ++  T RI  M+ + + I   V
Sbjct: 10  AKSLPREPGVYQFR-AEGTTLYVGKAVDLRSRVRSY--ADPRTARIRRMVDRADEIEIAV 66

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS------- 115
           T TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +TD    P +   RD         
Sbjct: 67  TDTETQALLLEANLIKRHQPRYNVRLKDDKSYPMVQLTDHEA-PRIEITRDPDGEAQGAS 125

Query: 116 ------TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169
                     + FGPF +   VE  + +L+ T+ +R C+D  +  R RPCL +++  C+ 
Sbjct: 126 SASGGAASGPTVFGPFTNKGQVETVVKALRETYGVRGCSDHKYSGRDRPCLDYEMGLCTA 185

Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229
           PCT EI  E Y + V   ++F  G    L + + R M  A   +++E A   RDRL  + 
Sbjct: 186 PCTREIDLESYAQDVTAVERFFEGETGILADPLRREMEAAAEDQNFERAANLRDRLETVE 245

Query: 230 HIQN------HNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN- 282
                      +      +D   +      A +       G+        L+  +     
Sbjct: 246 TFHGEGGEAVQSVGDERAVDVLGVAIEGEDATVARLRAERGKLVDRDRHTLEAPAAEGAG 305

Query: 283 ------AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336
                   +L+ F+ Q+Y ++  P+ +LL E   +  +      +     V + VP  G 
Sbjct: 306 TEEGGVPAVLAAFIVQYYAERDLPDALLLPERHGDDEVAAWLEAEG----VSVRVPGAGR 361

Query: 337 KRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396
           + K+++ AL NA R+             +L D  +        +R+E +D SH  G SAV
Sbjct: 362 EAKLVDLALKNARRNVGG-----RDECGMLADALEID----AARRVEGFDVSHAQGKSAV 412

Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456
           G  V   +    K  YR+  L        DD   MR +LE R S+ ++  ++        
Sbjct: 413 GSDVTFVDGSAEKADYRRKKLTDQ----NDDYDNMRALLEWRASRAVEGRDDRPD----- 463

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
                  PD++++DGG+GQL AA+  L  +  +  +  +++AK  +R        V    
Sbjct: 464 -------PDLLLIDGGEGQLEAARDALAAVGWD--VPAVALAKAEER-------VVTPDR 507

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG 576
                   P L+ +QR+RDEAHRFA+  H+  R +   + LD++ G+GP  ++ LL  FG
Sbjct: 508 TFSWPSDAPHLHLLQRVRDEAHRFAVQYHQTVRDE-VKTVLDDVPGVGPETRKRLLGRFG 566

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +V+ +  +S + + S+EGI +K A  I +  
Sbjct: 567 SVENVREASVDDIESVEGIGEKTAETIKSRL 597


>gi|296436341|gb|ADH18515.1| excinuclease ABC subunit C [Chlamydia trachomatis G/9768]
 gi|296438200|gb|ADH20361.1| excinuclease ABC subunit C [Chlamydia trachomatis G/11074]
 gi|297140701|gb|ADH97459.1| excinuclease ABC subunit C [Chlamydia trachomatis G/9301]
          Length = 598

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/615 (29%), Positives = 290/615 (47%), Gaps = 42/615 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR-ITHMISQINNIRFT 61
            + +   PGVY M D  G VLYVGKA NL+ R+ SY+     + + I  ++ +  +I   
Sbjct: 8   LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRKRIPFLMKKTTDIDTI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117
           V   E EA+LLE N+IK+ +PR+N+LL+DDK+F  + ++ +H  P +   R  +      
Sbjct: 68  VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +   FGP+ S +A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S 
Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            +Y E + +A  FL G   +    + + + +A+ ++ +E A      L  +         
Sbjct: 188 TEYQETLDKAVLFLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHV 247

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                  +D   LY   +LA +     + G+  G   F    +++  +A   S+ L+ + 
Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P+ I +    +   L    +        KI  PK    ++++  A  NA      
Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                 S     ++    F L   P RIE YDN+H+ G   VG  +V     F   QY  
Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENGLFSPKQYCT 420

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F++        DD A    VL RRF  L                     P+++++DGG+ 
Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530
           Q   AQ +L++LN+   IT+++IAK      +S   EK F +   + ++L+    IL F 
Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           Q LRDEAHRFAI  +RK+  KA  +   +I GIG ++ + LLQ F + K +  +S E L 
Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577

Query: 591 SIEGISKKIACKIYN 605
           +++GI+ K   +I  
Sbjct: 578 TVQGITAKDIQRIQE 592


>gi|301335372|ref|ZP_07223616.1| excinuclease ABC subunit C [Chlamydia trachomatis L2tet1]
          Length = 598

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/615 (29%), Positives = 292/615 (47%), Gaps = 42/615 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            + +   PGVY M D  G VLYVGKA NL+ R+ SY+     +  RI  ++ +  +I   
Sbjct: 8   LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRERIPFLMKKTTDIDTI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117
           V   E EA+LLE N+IK+ +PR+N+LL+DDK+F  + ++ +H  P +   R  +      
Sbjct: 68  VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +   FGP+ S +A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S 
Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            +Y E + +A  FL G   +    + + + +A+ ++ +E A      L  +         
Sbjct: 188 TEYQETLDKAILFLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHV 247

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                  +D   LY   +LA +     + G+  G   F    +++  +A   S+ L+ + 
Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P+ I +    +   L    +        KI  PK    ++++  A  NA      
Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                 S     ++    F L   P RIE YDN+H+ G   VG  +V   + F   QYR 
Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENDLFSPKQYRT 420

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F++        DD A    VL RRF  L                     P+++++DGG+ 
Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530
           Q   AQ +L++LN+   IT+++IAK      +S   EK F +   + ++L+    IL F 
Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           Q LRDEAHRFAI  +RK+  KA  +   +I GIG ++ + LLQ F + K +  +S E L 
Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577

Query: 591 SIEGISKKIACKIYN 605
           +++GI+ K   +I  
Sbjct: 578 TVQGITAKDIQRIQE 592


>gi|255311626|ref|ZP_05354196.1| excinuclease ABC subunit C [Chlamydia trachomatis 6276]
 gi|255317927|ref|ZP_05359173.1| excinuclease ABC subunit C [Chlamydia trachomatis 6276s]
          Length = 598

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/615 (29%), Positives = 290/615 (47%), Gaps = 42/615 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR-ITHMISQINNIRFT 61
            + +   PGVY M D  G VLYVGKA NL+ R+ SY+     + + I  ++ +  +I   
Sbjct: 8   LKDVSSSPGVYLMKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRKRIPFLMKKTTDIDTI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TI 117
           V   E EA+LLE N+IK+ +PR+N+LL+DDK+F  + ++ +H  P +   R  +      
Sbjct: 68  VVSNETEAILLENNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKK 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +   FGP+ S +A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S 
Sbjct: 128 KQWLFGPYVSAEACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQ 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
            +Y E + +A  FL G   +    + + + +A+ ++ +E A      L  +         
Sbjct: 188 TEYQETLDKAVLFLKGDVRSTISNLEKAIEKASQEQKFEYAAALYRTLTLIRQTMAKQHV 247

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                  +D   LY   +LA +     + G+  G   F    +++  +A   S+ L+ + 
Sbjct: 248 EKFQAYDIDVLGLYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYA 307

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            +   P+ I +    +   L    +        KI  PK    ++++  A  NA      
Sbjct: 308 ENPRIPKEIFVPVSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKP 364

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                 S     ++    F L   P RIE YDN+H+ G   VG  +V     F   QY  
Sbjct: 365 F----NSITPPYEELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENGLFSPKQYCT 420

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F++        DD A    VL RRF  L                     P+++++DGG+ 
Sbjct: 421 FSI----TSHGDDLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRN 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFI 530
           Q   AQ +L++LN+   IT+++IAK      +S   EK F +   + ++L+    IL F 
Sbjct: 460 QFKRAQRILEELNLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFF 518

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           Q LRDEAHRFAI  +RK+  KA  +   +I GIG ++ + LLQ F + K +  +S E L 
Sbjct: 519 QLLRDEAHRFAIQHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELK 577

Query: 591 SIEGISKKIACKIYN 605
           +++GI+ K   +I  
Sbjct: 578 TVQGITAKDIQRIQE 592


>gi|320450931|ref|YP_004203027.1| excinuclease ABC subunit C [Thermus scotoductus SA-01]
 gi|320151100|gb|ADW22478.1| excinuclease ABC, subunit C [Thermus scotoductus SA-01]
          Length = 592

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/598 (28%), Positives = 274/598 (45%), Gaps = 38/598 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PGVY        VLYVGKA NL+ R++SY    +   +   +  +   + F  T  
Sbjct: 12  LPEAPGVYLWK-QGEEVLYVGKAKNLRARVRSYF---HQEGKAARIAQEATALDFIATRD 67

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           EVEALLLEAN+IK  +P +N+LL+DDK +P++ +T +   P L   R        Y+GPF
Sbjct: 68  EVEALLLEANLIKAHRPPYNVLLKDDKHYPFLKLT-QEPFPTLLVVRRVEEDGAKYYGPF 126

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               A+ +    + R F LR  +    + R  PCL + + RC  PC G    + Y E V 
Sbjct: 127 PEASALRRIKTLIDRLFPLRKNSGYPMKKRRYPCLNYSMGRCLAPCVGLADPKAYQEVVR 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQNHNDSIYNR 241
           + +  L G    L  ++   M +A  + ++E A   RD++       S  Q   D     
Sbjct: 187 QVEAVLEGKVDGLLRELEAKMREAAQRLEFERAAEIRDQMEALRAFFSTAQQAFDPEMGD 246

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
           +D   L     LA +Q      G+  G  +  ++ +  S    + ++    +    P P 
Sbjct: 247 LDFLGLAQAGPLAVVQLYQVRSGRILGRISRVVEKEEASPEEILWAFLRDYYLEASPLPP 306

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ILL    E+   L     ++ G +V++ VPK+GEK +++E A  NA  +   +L     
Sbjct: 307 LILLPFPLEDLESLAALLHRRAGRRVELRVPKKGEKVRLLELAEKNARLALETELKQRER 366

Query: 362 H--QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
                 LK   +   L   P R+E YD SH+ G + V  M V+      + +YR+  L  
Sbjct: 367 RGDHPALKALQEILGLSQRPYRLEGYDVSHLQGEARVFSMAVLEGGRPKRAEYRRMRLK- 425

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
                 DD A M   + RRF+  +K+    +                  +DGG GQ+ AA
Sbjct: 426 ---AGNDDYAAMEEGVYRRFTGSLKDLPLPDLLL---------------IDGGLGQVRAA 467

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
              L++  +   + ++ +AK        E    ++G  + L +  P L  +  LRDEAH+
Sbjct: 468 ARALERAGLS--LPLVGLAKKE------EVLITQEGREIRLPLTHPALQLLIHLRDEAHQ 519

Query: 540 FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
             +  H+KRR +  +  L  I GIG  R+RLLL+ +G +K +  +  E LA + G+++
Sbjct: 520 NGLRYHQKRRSQELFQVLKGIPGIGEARRRLLLERYGGIKALKEAPLEELARLPGMNR 577


>gi|325970606|ref|YP_004246797.1| UvrABC system protein C [Spirochaeta sp. Buddy]
 gi|324025844|gb|ADY12603.1| UvrABC system protein C [Spirochaeta sp. Buddy]
          Length = 617

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/610 (27%), Positives = 293/610 (48%), Gaps = 31/610 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            ++++P   GVY M D    ++YVGKA +L+KR+ SY  +N  + +   ++S+I  I   
Sbjct: 33  QAKELPHQSGVYLMKDSKDTIIYVGKAKDLRKRVTSYFLANR-SPKTAALVSKIARIDHI 91

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T  E EAL+LE N+IK+  PR+NI L+D KS+P I IT+    P ++K R       +Y
Sbjct: 92  ITGNEYEALVLENNLIKKYSPRYNISLKDGKSYPIIRITN-EPFPKVFKTRRFIDDGSTY 150

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+     +E  ++ + + F LR C     + R +PCL + I  C GPC G ++ E+Y 
Sbjct: 151 YGPYPDAGKLELYLDLIAKLFPLRRCGTP-LKKRDKPCLYYHIGLCLGPCAGLVTVEEYN 209

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           + +   K  L G    L  ++   M  A+   ++E A+I RD++AA+  I++        
Sbjct: 210 KSITAVKNLLEGKTDALIARLEEEMQHASKALNFEEAVIKRDQIAAIKAIESGQQVQDFS 269

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  ++     L  I       GQ  G   +  +T  + T  + L  FL Q+Y D  
Sbjct: 270 QESRDYAAIEMRYPLCTISLMQMRSGQLIGRALYRAETFGDET--ETLLNFLVQYYADGL 327

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
                L      + +L+   FF+Q G ++++++P  G+  +I+  A  NA R   ++L +
Sbjct: 328 KLPQFLYVSHEIDVNLIRRYFFEQLGGRLEVSLPLDGKHFRILRMARENAIRDVEKRLKS 387

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +    L D  +   L   P  IE +D + + G   V  ++   +    K  YR++N+ 
Sbjct: 388 RDN-TKALDDLAEVLGLTSPPSLIEGFDIAQLAGKYTVASLISFRDGNPDKPNYRRYNIK 446

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD   +R  + RR+++++                    PD++I+DGG GQ++A
Sbjct: 447 S-LEGKIDDYESIREAVARRYTKILNEN--------------LERPDLLIIDGGLGQVNA 491

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL  L +   I II +AK  +        F  + + L L      L  +  +RDE H
Sbjct: 492 ARQVLDDLGM-FEIPIIGLAKENET-----IVFDDERKDLQLPEDHEALRLVMAVRDECH 545

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFA + ++  R K A++  L+ + GIG  R   L++ +G+++ +   + E LA    +  
Sbjct: 546 RFATSANQAARSKEASFRVLESVQGIGKKRSEQLMKQYGSLEALLAKTAEELAKETSLPL 605

Query: 598 KIACKIYNHF 607
            +A ++    
Sbjct: 606 PVAQRLLKQL 615


>gi|297171241|gb|ADI22248.1| nuclease subunit of the excinuclease complex [uncultured
           Gemmatimonadales bacterium HF0200_36I24]
          Length = 551

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/572 (31%), Positives = 276/572 (48%), Gaps = 37/572 (6%)

Query: 51  MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110
           MI QI  +   V  +E E+L+LEAN+IK  KPRFNI LRDDK +PYI +T +   P ++ 
Sbjct: 1   MIRQIVEVDTIVVGSETESLILEANLIKEHKPRFNIQLRDDKRYPYIKVTIQEAFPRVFV 60

Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSG 169
            R        YFGP+ SV  +   +  ++R + +RSC  D       RPCL + I RC  
Sbjct: 61  TRRLEDDGSQYFGPYTSVGLMRDALEVVKRLYTVRSCRYDLPKESPERPCLDYHIGRCLA 120

Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229
           PC G      Y   ++E  K L G    +++++ + M+ A+   ++E A   RD +  L 
Sbjct: 121 PCVGYQDQNSYGIMINEILKVLGGETEYVRDRVQKQMSDASRDLEFERAAHFRDIITVLD 180

Query: 230 HIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286
            + +         N  D   +  + ++          G   G  T      SE  +  +L
Sbjct: 181 GMAHQQLVEDLRGNDYDLIGIARDGDIGVGVVMKIRRGVLLGRDTIRFSEISECNDGSLL 240

Query: 287 SYFLRQFYT------DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340
                ++Y           P+ IL+  + E   +L+   F + GYKV I +PK+G KR++
Sbjct: 241 DMLTSRYYLGGSKQPHSDFPKEILVPVDFENKDILKEVLFYKDGYKVDIRIPKRGIKRRL 300

Query: 341 IEQALINAHRSHTQKLSTEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396
            E A  NA  +   +L+T           L D + K  L  +P+ I  +D SHI G   V
Sbjct: 301 CELATDNARHALEDRLTTTRQFHDRADEVLYDLSDKLQLKVVPRFIACFDVSHIQGSETV 360

Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456
           G  VV       K++YR+  +  +     DD   M  V+ R FS  ++N           
Sbjct: 361 GSAVVFENAEPKKSEYRRMRIRGD--WGNDDYRSMAEVVSRYFSYRLENG---------- 408

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
                  PD+V++DGGKGQL +A   L +L V + + +IS+AK  +       F +   E
Sbjct: 409 ----LPLPDLVLIDGGKGQLRSAHDSLNELGVTD-MPMISLAKREEL-----VFRLGTRE 458

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSF 575
            L    RD  L+ +QR+RDEAHRFA+T +RK RR +   S L EI GIGP +++LLL  F
Sbjct: 459 PLRFKRRDNALHVLQRIRDEAHRFAVTYNRKLRRNRTVSSDLSEIPGIGPEKQKLLLLRF 518

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           G+V+ I  ++ E +A I G+   +A +I  + 
Sbjct: 519 GSVRAIKSANVEEIAEISGLGLVLADRIITYL 550


>gi|167769119|ref|ZP_02441172.1| hypothetical protein ANACOL_00442 [Anaerotruncus colihominis DSM
           17241]
 gi|167668759|gb|EDS12889.1| hypothetical protein ANACOL_00442 [Anaerotruncus colihominis DSM
           17241]
          Length = 615

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/617 (27%), Positives = 291/617 (47%), Gaps = 23/617 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            + ++P  PGVY M + +G ++Y+GKA  L+ R+ SY  +   H  ++  M+S + +   
Sbjct: 15  KARRLPLLPGVYIMKNKSGEIIYIGKAKALKNRVSSYFRAVEKHHPKVYKMVSHVYDFDS 74

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E EAL+LE ++IK+  P++NILL+DDK + YI +  +     +            
Sbjct: 75  IVTDSEFEALVLECSLIKQHTPKYNILLKDDKGYSYIKVAPRQ-YGRITHVFQKEDDGAQ 133

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSE 178
           Y GP+ S   V +T++   R F L +C     +   + RPCL + IKRC G C G+IS E
Sbjct: 134 YIGPYISSFVVNETVDEANRVFMLPTCGKKFPQEFGKARPCLNYHIKRCMGVCMGKISPE 193

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E + +A  ++ GG+    E++   MN       +E A   RDR+ A++ I      +
Sbjct: 194 AYDEILEQALDYIRGGSARAVERLTEQMNLCAENMQFEKAAQLRDRIRAVTRISESQKVV 253

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           +      D  +L  +++  C     F   +      F +    +   A++          
Sbjct: 254 FAKVANQDIIALARSESETCAVVLKFRGERLVDKQDFLIGATDDIDAARLEFLLRYYTTR 313

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ I L  +  +  L      +Q GYKV+I +P++GE+ +++E A  NA    +Q 
Sbjct: 314 RGDLPKKIQLDGDVADVQLAARLLSEQAGYKVEIHIPQRGEQLRLVEMARKNAVERLSQT 373

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           +         L +  +   L   P RIE YD S+I   + VG MVV      ++  YRKF
Sbjct: 374 VRRAGREVGALDELARLLGLERPPARIEAYDISNIGSDTVVGGMVVFENGRPLRRCYRKF 433

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    V   DD A M  ++ RRF+    +E          + +F   PD+++LDGG+G 
Sbjct: 434 TIKT--VAGTDDYASMAEMIGRRFTHYKNDE--------TPDEAFGRLPDLILLDGGRGH 483

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           + A   VL+ + +   + +  + K  K          + G  + +         +  ++D
Sbjct: 484 VGAIAPVLESMGIA--VPLFGMVKDDKHRTRA---IAQSGGEIAVAPHRSAFTLVSTIQD 538

Query: 536 EAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HR++I+  R R +K+++   L +  GIG  R   + + F T+K I  +  + LA+++G
Sbjct: 539 EVHRYSISFSRARHQKSSFELSLTKCEGIGQKRAAEIFRHFKTIKAIRAADVDALAAVKG 598

Query: 595 ISKKIACKIYNHFHKNT 611
           +S+  A K+Y   H + 
Sbjct: 599 VSRPAAEKLYEFLHADD 615


>gi|28572624|ref|NP_789404.1| excinuclease ABC subunit C [Tropheryma whipplei TW08/27]
 gi|81630094|sp|Q83NI9|UVRC_TROW8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|28410756|emb|CAD67142.1| excinuclease ABC subunit C [Tropheryma whipplei TW08/27]
          Length = 607

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/614 (27%), Positives = 306/614 (49%), Gaps = 35/614 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D  GR+LYVGKA NL+ R+ SY  +     RI++M+S    + +T   
Sbjct: 8   EIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRRISYMLSISKKVGWTCVA 67

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            ++EAL LE + IK   P  N+ L+DDK++P++ +T   ++P L   R       ++FGP
Sbjct: 68  DDIEALRLEYSWIKEFAPPCNVKLKDDKAYPFLAVTIGEQVPRLLITRRKIQ-YATHFGP 126

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +  V  + +T++ L + F +R+C+ + ++       PC   QI +C GPC+ + +  +Y 
Sbjct: 127 YPKVFHLRETVSLLHKIFQIRTCSPTNYKRAIASGMPCFEGQINKCFGPCSLKTTHLQYQ 186

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + +     FL G + +L E + + M +A+  ++YE A I RD++ A   + + +  + + 
Sbjct: 187 KRIKNLMAFLEGQSSSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLDE 246

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  ++  + ++A +Q      G+ +   ++  +   + + +++LS  + Q Y    
Sbjct: 247 TVSADFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQVYDKLS 306

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYK---VKITVPKQGEKRKIIEQALINA----HRS 351
            P+ I+L ++    S L      +   +   ++I      ++R+++E    NA     R 
Sbjct: 307 LPKRIVLFDKPSYLSALSAHLNDKNIDRSLEIEIVYHPNEQERRLLETVKDNALSELERH 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             ++ S        L +  K   L  +P RIE +D SH+ G +  G MVV       K+ 
Sbjct: 367 RLRRSSDYTERHRSLFELQKYLNLNSLPVRIECFDISHLSGTNTSGSMVVFENGEPKKSA 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR FN+H   +   +D A M  ++ RR   L           +      P +P ++I+DG
Sbjct: 427 YRHFNIH---IDQNNDTASMFSLICRRLRSL-----------ESVAQDSPDYPHLMIIDG 472

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GK QLSAA G L+++ +  +I + +++K  +     E +      +L+L      L+ +Q
Sbjct: 473 GKPQLSAAVGALQEVGL--KIPVFALSKRLE-----ELWSPGVKTSLILPPNSESLFLLQ 525

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++RDE+HRFA+    +RR+    S L  I G+G  +   LL+ F +   I ++S E +++
Sbjct: 526 KIRDESHRFALKQQTRRREAYLTSELFRIPGLGKQKVMQLLRRFSSFAEIRQASIEDISA 585

Query: 592 IEGISKKIACKIYN 605
           + G   K A KI  
Sbjct: 586 LPGFGVKTAEKIKE 599


>gi|28493264|ref|NP_787425.1| excinuclease ABC subunit C [Tropheryma whipplei str. Twist]
 gi|81438052|sp|Q83MY6|UVRC_TROWT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|28476305|gb|AAO44394.1| excinuclease ABC subunit C [Tropheryma whipplei str. Twist]
          Length = 607

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/614 (27%), Positives = 307/614 (50%), Gaps = 35/614 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVY+  D  GR+LYVGKA NL+ R+ SY  +     RI++M+S    + +T   
Sbjct: 8   EIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRRISYMLSISKKVGWTCVA 67

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            ++EAL LE + IK   P  N+ L+DDK++P++ +T   ++P L   R       ++FGP
Sbjct: 68  DDIEALRLEYSWIKEFAPPCNVKLKDDKAYPFLAVTIGEQVPRLLITRRKIQ-YATHFGP 126

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +  V  + +T++ L + F +R+C+ + ++       PC   QI +C GPC+ + +  +Y 
Sbjct: 127 YPKVFHLRETVSLLHKIFQIRTCSPTNYKRAIASGMPCFEGQINKCFGPCSLKTTHLQYQ 186

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + +     FL G + +L E + + M +A+  ++YE A I RD++ A   + + +  + + 
Sbjct: 187 KRIKNLMAFLEGQSSSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLDE 246

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  ++  + ++A +Q      G+ +   ++  +   + + +++LS  + Q Y    
Sbjct: 247 TVSADFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQVYDKLS 306

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYK---VKITVPKQGEKRKIIEQALINA----HRS 351
            P+ I+L ++    S L      +   +   ++I      ++R+++E    NA     R 
Sbjct: 307 LPKRIVLFDKPSYLSALSAHLNDKNIDRSLEIEIVYHPNEQERRLLETVKDNALSELERH 366

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             ++ S        L +  K   L  +P RIE +D SH++G +  G MVV       K+ 
Sbjct: 367 RLRRSSDYTERHRSLFELQKYLNLNSLPVRIECFDISHLLGTNTSGSMVVFENGEPKKSA 426

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR FN+H   +   +D A M  ++ RR   L           +      P +P ++I+DG
Sbjct: 427 YRHFNIH---IDQNNDTASMFSLICRRLRSL-----------ESVAQDSPDYPHLMIIDG 472

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GK QLSAA G L+++ +  +I + +++K  +     E +      +L+L      L+ +Q
Sbjct: 473 GKPQLSAAVGALQEVGL--KIPVFALSKRLE-----ELWSPGVKTSLILPPNSESLFLLQ 525

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++RDE+HRFA+    +RR+    S L  I G+G  +   LL+ F +   I ++S E +++
Sbjct: 526 KIRDESHRFALKQQTRRREAYLTSELFRIPGLGKQKVMQLLRRFSSFAEIRQASIEDISA 585

Query: 592 IEGISKKIACKIYN 605
           + G   K A KI  
Sbjct: 586 LPGFGVKTAEKIKE 599


>gi|253582249|ref|ZP_04859472.1| excision endonuclease subunit UvrC [Fusobacterium varium ATCC
           27725]
 gi|251835788|gb|EES64326.1| excision endonuclease subunit UvrC [Fusobacterium varium ATCC
           27725]
          Length = 596

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 184/618 (29%), Positives = 299/618 (48%), Gaps = 39/618 (6%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +PE PGVY M    G+V+YVGKA NL+ R+ SY +  +   +   ++  I +I F
Sbjct: 8   IKKIDIPENPGVYLMK-KNGKVIYVGKAKNLKNRVSSYFNREHENEKTKELVKNIEDIEF 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK---HRDSSTI 117
            +  +E++A +LE N+IK+  P++NI L+D+K++PYI I+ +   P +      R   T 
Sbjct: 67  IMCNSEIDAFVLENNLIKKYSPKYNIALKDEKTYPYIKIS-RETFPNIKMIRTTRALDTK 125

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
            G YFGP+           ++ + F +R C   + +  TRPCL + +K C GPCT +   
Sbjct: 126 TGMYFGPYPQGG--WNLKKNIIKIFKIRDCNRDMNKVYTRPCLKYFMKMCPGPCTYKNIK 183

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E+Y E V  AK+ L G   N+ E++ + M +A+    +E AI++R+++  +    N+  +
Sbjct: 184 EEYNELVEGAKQLLKGQGRNVIEELKKKMEKASEDMKFEEAILYREQIKEIETTVNNQIT 243

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
            Y      D F++    N   I       G+  G  +  +    +     IL   +  FY
Sbjct: 244 EYGKELDEDIFNIKEENNRVFICVLNVRDGKILGKISTNIDLK-DKIYENILEVVVMAFY 302

Query: 295 TDKPCPENILLSEEAEETS--LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
              P P+NI+ S + E  S  +LE     +           +  +++++E   +N  R  
Sbjct: 303 NKHPIPQNIVFSSKYENESNRILEALKKDKNKKIEFFFPKIKSRRKELLEMGELNLIRDV 362

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                 +   +  L        L   P++IE +D S+I G  AV  M V  E    K  Y
Sbjct: 363 ENYYRKKSVVEEGLYKIYTTLELKRYPRKIECFDISNIQGKDAVASMSVSVEGKASKQDY 422

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RKF +   D    DD AMMR V+ RR+ +L +NE                +PDV+++DGG
Sbjct: 423 RKFKITCKDTP--DDFAMMREVITRRYGKLPENE----------------FPDVILIDGG 464

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
            GQ++AA  V K+L  +    ++S+AK  +     E +   +    + +     L   QR
Sbjct: 465 LGQINAAGEVFKELGKDGISDLLSLAKRDE-----EVYKYGENVPYIFSKDQEALKIFQR 519

Query: 533 LRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDEAHRF IT HRK R K    S LDE+ G+G  RK +LL+ FG+V  I++    +++ 
Sbjct: 520 VRDEAHRFGITYHRKLRSKRVLSSELDEVEGVGEKRKAVLLKEFGSVTKIAKEDVNSISR 579

Query: 592 IEGISKKIACKIYNHFHK 609
              + + +A  I     K
Sbjct: 580 F--VPRNVAENILEKLRK 595


>gi|42527978|ref|NP_973076.1| excinuclease ABC, C subunit [Treponema denticola ATCC 35405]
 gi|81411542|sp|Q73JT1|UVRC_TREDE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|41819023|gb|AAS12995.1| excinuclease ABC, C subunit [Treponema denticola ATCC 35405]
          Length = 652

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/656 (27%), Positives = 298/656 (45%), Gaps = 85/656 (12%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P+  GVY   D AG V+YVGKA +L+ R+ SY  SN    +   ++S+  +I +  T  E
Sbjct: 18  PKTSGVYLWKDKAGTVIYVGKAKSLKNRLSSYFTSNR-DIKTRILVSRAESIEYIQTENE 76

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLE  +IK+ KPR+NI L+D K++P + +T++   P +Y+ R+       YFGPF 
Sbjct: 77  YEALLLENTLIKKHKPRYNINLKDGKTYPVLKLTNEE-FPKVYRTRNIKNDGSKYFGPFP 135

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           +V AV+  +  ++  + LR C     + R  PCL F I RC  PC G+IS+E+Y + + E
Sbjct: 136 NVSAVDMFLTLIKHNYTLRQCK--QLKKRETPCLYFHIGRCKAPCCGKISAEEYGKDIEE 193

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH---NDSIYNRMD 243
               L G   ++   +   M +A  K+++E A   RD + A+  ++      D      D
Sbjct: 194 ITLLLEGEMEDVSGTLKEKMKEAAEKKEFEKAARLRDGIQAVYALRGQNIVQDMDPESRD 253

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPEN 302
             +      +  I       G+  G      ++ S     +ILS F+  +YT     P  
Sbjct: 254 YIAWAFEGAMVSIAVLKMRNGRLVGR--DLYRSHSLKEEGEILSEFISAYYTSANEVPPK 311

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPK----------------------------- 333
           I + + AE  +L+E    ++   K +I++                               
Sbjct: 312 IFIPQAAEGNALIEKWLNEELHAKTRISIIPLEKESLAAEERSAADSLTEIEEAASKTIG 371

Query: 334 ----------------------QGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
                                     +  ++ A  NA     ++L  E      ++D  K
Sbjct: 372 YAVKEPAPLSAQEEKLNLSPAEIKHHKAALKMARFNAKEDAMRRLR-EQGDFAAVEDLQK 430

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
           +  LP +P+RIE +D +H+ G   V  ++   E    K  YR F L   D    DD A M
Sbjct: 431 RLNLPCLPQRIEGFDIAHLGGTFTVAALISFKEGNPDKKNYRIFRLKNTDGV-IDDYASM 489

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           R V+ RR+++L+    +L              PD++++DGG GQ++AA  ++  L++   
Sbjct: 490 REVIARRYTRLLNEGADL--------------PDLILIDGGIGQVNAASKIVDALDLG-- 533

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRK 550
           I +I +A         E +F    + ++L  R   L  +QR+RDEAHRF+ T + K RR 
Sbjct: 534 IPVIGLA-----EKNEEVYFPHNSKPVILPRRSDALRLLQRIRDEAHRFSNTRNNKLRRA 588

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
               +  + +  IG  R  +LL++FG+ + +   + + L+    IS K A ++ + 
Sbjct: 589 NKLKTEFENLPHIGKKRAHVLLKAFGSTENLKTLTAQALSETAKISLKQAEEVLDA 644


>gi|325474800|gb|EGC77986.1| UvrABC system protein C [Treponema denticola F0402]
          Length = 652

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/656 (27%), Positives = 298/656 (45%), Gaps = 85/656 (12%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P+  GVY   D AG V+YVGKA +L+ R+ SY  SN    +   ++S+  +I +  T  E
Sbjct: 18  PKTSGVYLWKDKAGTVIYVGKAKSLKNRLSSYFTSNR-DIKTRILVSRAESIEYIQTENE 76

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLE  +IK+ KPR+NI L+D K++P + +T   + P +Y+ R+       YFGPF 
Sbjct: 77  YEALLLENTLIKKHKPRYNINLKDGKTYPVLKLT-DEEFPKVYRTRNIKNDGSKYFGPFP 135

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           +V AV+  +  ++  + LR C     + R  PCL F I RC  PC G+IS+E+Y + + E
Sbjct: 136 NVSAVDMFLALIKHNYTLRQCKR--LKKRESPCLYFHIGRCKAPCCGKISAEEYGKDIEE 193

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH---NDSIYNRMD 243
               L G   ++   +   M +A  K+++E A   RD + A+  ++      D      D
Sbjct: 194 ITLLLEGEMEDVSGTLKEKMKEAAEKKEFEKAARLRDGIQAVYALRGQNIVQDMDPESRD 253

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-KPCPEN 302
             +      +  I       G+  G      ++ S     +ILS F+  +YT     P  
Sbjct: 254 YIAWAFEGAMVSIAVLKMRNGRLVGR--DLYRSHSLKEEGEILSEFISAYYTSANEVPPK 311

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPK----------------------------- 333
           I + + AE  +L+E    ++   K +I++                               
Sbjct: 312 IFIPQAAEGNALIEKWLNEELHAKTRISIIPLEKESLAAEETSTTDSLTEIEEAASKTIG 371

Query: 334 ----------------------QGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
                                     +  ++ A  NA     ++L  E      ++D  K
Sbjct: 372 YTVQEPAPSAAQEEKLNLSPAEIKHHKAALKMARFNAKEDAMRRLR-EQGDFAAVEDLQK 430

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
           +  LP +P+RIE +D +H+ G   V  ++   E    K  YR F L   D    DD A M
Sbjct: 431 RLNLPCLPQRIEGFDIAHLGGTFTVAALISFKEGNPDKKNYRIFRLKNTDGV-IDDYASM 489

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           R V+ RR+++L+    +L              PD++++DGG GQ++AA  ++  L++   
Sbjct: 490 REVIARRYTRLLNEGADL--------------PDLILIDGGIGQVNAASKIVNALDLG-- 533

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRK 550
           I +I +A         E +F    E ++L  R   L  +QR+RDEAHRF+ T + K RR 
Sbjct: 534 IPVIGLA-----EKNEEVYFPHNSEPVILPRRSDALRLLQRIRDEAHRFSNTRNNKLRRA 588

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
               +  + +  IG  R  +LL++FG  + +  ++ +TL+    IS K A ++ + 
Sbjct: 589 NKLKTEFENLPHIGKKRAHVLLKAFGNTENLKTTTAQTLSETAKISLKQAEEVLDA 644


>gi|319779639|ref|YP_004130552.1| Excinuclease ABC subunit C [Taylorella equigenitalis MCE9]
 gi|317109663|gb|ADU92409.1| Excinuclease ABC subunit C [Taylorella equigenitalis MCE9]
          Length = 548

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 194/567 (34%), Positives = 295/567 (52%), Gaps = 29/567 (5%)

Query: 52  ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111
           ++++    +TVT +E EAL+LE N+IK L PR+NIL RDDK++P++  +  H+ P +  +
Sbjct: 1   MAKVVRTEYTVTNSESEALILENNLIKNLHPRYNILFRDDKTYPFLKFS-AHQFPQISFY 59

Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
           R S+   G +FGP+ +  AV +TI  LQR F LR+CADSVF++R+RPC+ FQIKRCSGPC
Sbjct: 60  RGSTNKPGKFFGPYPNGYAVGQTIEVLQRVFRLRTCADSVFQNRSRPCMQFQIKRCSGPC 119

Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231
           TG IS E+Y   V  A  FL G   ++ + I   M  A+   +YE A I+RD++ AL  I
Sbjct: 120 TGFISKEEYESDVKNAVDFLDGKTPDVLKNIETKMLTASEVMNYELAAIYRDQIKALGTI 179

Query: 232 QNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288
            N      +     D  ++       CI       G++ G  +           + IL  
Sbjct: 180 MNSQSMEVSPKINSDIIAIAQLDGKTCINLAMVRKGRHLGDKSIIPTHVHGDEASIILEA 239

Query: 289 FLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
           F+   Y +   PE ++LS E  + S++E+   K +  KV I       ++  +E A+ NA
Sbjct: 240 FISSHYLNHEIPETLVLSHELHDRSVIELFESKYH-KKVHIVARANSLQKTWLELAIKNA 298

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPK-----RIEIYDNSHIMGCSAVGCMVVVG 403
             +  ++L+     +     F +   L           IE +D SH  G +     VV  
Sbjct: 299 ELALARELNESTKAEKRTLAFAQVLGLSTDLDSLNELSIECFDISHTSGEATQASCVVYQ 358

Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463
            +    ++YR++N+  N +   DD A M  VL RR+S  +K+                  
Sbjct: 359 YHDMQSSRYRRYNI--NGITEGDDYAAMEQVLTRRYSNFLKDG--------------IDL 402

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNM 522
           PD+V++DGGKGQ+  A+ V ++L ++    I+ +AKG  R  G+E      G   L L +
Sbjct: 403 PDIVLIDGGKGQIGVAKRVFEELGLDLS-KIVGVAKGEGRKVGLETLHFVDGRAPLELGV 461

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMI 581
           +   L  I  +RDEAHRFAIT  R RR K    S L++I+G+GP R++ LL  FG    +
Sbjct: 462 QSSALMLIASIRDEAHRFAITGMRNRRAKQRNVSRLEDIDGVGPKRRQKLLARFGGFTEV 521

Query: 582 SRSSPETLASIEGISKKIACKIYNHFH 608
             +S   L S+EGIS+++A KIY    
Sbjct: 522 CNASIADLQSVEGISREVAEKIYYALR 548


>gi|300871639|ref|YP_003786512.1| excinuclease ABC subunit C [Brachyspira pilosicoli 95/1000]
 gi|300689340|gb|ADK32011.1| excinuclease ABC, C subunit [Brachyspira pilosicoli 95/1000]
          Length = 610

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/625 (28%), Positives = 301/625 (48%), Gaps = 43/625 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P   GVY M D    ++Y+GKA +L+KR+ SY   NN   + T ++  I +I + 
Sbjct: 12  KLKRLPTKSGVYFMKDKDANIIYIGKAKSLKKRVSSYFIGNNKDAKTTALVEHIRDIDYI 71

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-- 119
           VT  EVEAL+LEA MI++ KP +NILL+D KSFP+I IT++H  P + K R+        
Sbjct: 72  VTKNEVEALILEAEMIRKHKPHYNILLKDQKSFPFIAITNEH-FPRVIKARNVIDKDNAK 130

Query: 120 ---SYFGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
               Y+GP+ + +  E  +  +   F LR C  D   + + RPCL + I +C+ PC   I
Sbjct: 131 KYKKYYGPYVAAERAENIVKFIIDNFKLRRCKYDFPLKRKIRPCLYYHIGKCTAPCADLI 190

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
             ++Y + +  A   L G    L  K+ ++M     K ++E A   RD++  L  I    
Sbjct: 191 DEKEYDKDIDNAIMLLEGNVDELVAKMKQDMFVFAEKLEFERAKDLRDKIDLLKSITVEQ 250

Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST------NAQIL 286
                  + +D    Y       I       G+     TF ++  +          ++++
Sbjct: 251 SIYVPESDDIDIIGAYGENGDYTIVVLSVKGGKLVDRKTFSMQDKNIDEYSNKSRYSEVI 310

Query: 287 SYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
           S F+ Q+YT     P +I      ++  +++    +  G  V+I +      + +I  A 
Sbjct: 311 SAFITQYYTHNNLIPASISTDFVIKDFDIVKDYLKEISGRDVEIKLDNTK--KGLISIAN 368

Query: 346 INAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
            NA     ++        + L    + F L   P  IE +D +HI G   +  MV     
Sbjct: 369 ENARHLFKERALIRE-VPIGLTRLQEIFKLKKAPSIIESFDIAHIQGSYTMAGMVRFVNG 427

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
                 YR FN+    V   DD A ++  + RR+ +L +                 ++PD
Sbjct: 428 VSDNKNYRIFNMKT--VTGIDDFASIKEAVYRRYKRLKEEN--------------STFPD 471

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++++DGG+GQL++A   L++L+++N+  I+++AK  +     E +   +   + LN  +P
Sbjct: 472 LILIDGGRGQLNSAIEALRELDIKNQ-PIMALAKKFE-----EIYLPNRETPVQLNDNEP 525

Query: 526 ILYFIQRLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
              F+Q++RDE HR+  T+H RKR ++   S L++I G+G      L   F  +  I  +
Sbjct: 526 ARLFLQKVRDETHRWVNTSHGRKRSREMVKSELEKIEGLGKKGIEKLYSHFINIDNIKNA 585

Query: 585 SPETLASIEGISKKIACKIYNHFHK 609
           S + +A+I GIS K+A  IYN+FHK
Sbjct: 586 SLDNIANIPGISYKVANNIYNYFHK 610


>gi|317486174|ref|ZP_07945013.1| excinuclease ABC [Bilophila wadsworthia 3_1_6]
 gi|316922565|gb|EFV43812.1| excinuclease ABC [Bilophila wadsworthia 3_1_6]
          Length = 671

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 192/682 (28%), Positives = 280/682 (41%), Gaps = 92/682 (13%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
           +S  +P  PG+Y   D  GR++YVGKA NL+KRI SY   ++  T +   MI    ++  
Sbjct: 5   ASSTLPTTPGIYIYKDAQGRIIYVGKARNLRKRILSYFRDASALTPKTVAMIGHAASLET 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE EALLLEA++IK+ +P +NI+LRDDK +    I      P L   R +      
Sbjct: 65  LSTTTEKEALLLEASLIKKHRPHYNIVLRDDKQYVLFRIAKDAPYPRLEVVRQARRDNAR 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF S  A  +T  ++ R F LR C D  F++R RPCL   I +C  PCT  +  E+Y
Sbjct: 125 YFGPFTSGQAARETWKTIHRVFPLRRCVDRAFKNRVRPCLYHHIGQCLAPCTENVPVEEY 184

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              +H  +  LSG +  L + +   M  A+   +YE A + RD++ A+         +  
Sbjct: 185 ASLIHRVELLLSGRSRELLDTLRHAMADASEAMNYEQAAVFRDQIKAIERTVERQSVVLP 244

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-D 296
               MD   +   K    +   F   G+     TFF      +   ++L  FL QFY   
Sbjct: 245 EGGNMDVAGVAPAKGGLALGLLFVREGRLVDGRTFFWPDLELAEGPELLWSFLGQFYGPQ 304

Query: 297 KPCPENILLSE------------------------------------------------- 307
              P  I++                                                   
Sbjct: 305 TSIPPRIVVPWLPEDTVLPGMSGEQDAPDSASPVKDHIATLEGEAEPPHAAGTDSNGHAP 364

Query: 308 -EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK----LSTEISH 362
            E E    LE +     G  V+I  P+   + ++++ A+ NA  +   K    +S  ++ 
Sbjct: 365 DEVESLEALEAALADARGGIVRIAKPRNAAEARLVDMAVSNAREAAVTKSEVPMSDRLAA 424

Query: 363 QMILKDFTKK-----FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
              L                  +RIE  D SH  G S    MVV  +    K+ YR + L
Sbjct: 425 AFALDKVQSALPGAVPMASRPIRRIECVDVSHTGGTSTRVGMVVFEDGQPQKSDYRTYAL 484

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   DD A +   + RR                    S P W D+V++DGG+GQ+S
Sbjct: 485 EGEAACNGDDYAALAEWMRRRL------------------ESGPPWADLVLIDGGRGQVS 526

Query: 478 AAQGVLKKLNVENRITIISIAK------GPKRSAGM---EKFFVKKGEALVLNMRDPILY 528
           A Q ++++ N E    +  IAK         R AG      F   +   L L      L 
Sbjct: 527 AVQRIVRESNAEGLFLLAGIAKARDDMGRADRRAGNVGDRIFLPGRSNPLPLRDGSAELL 586

Query: 529 FIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           F+Q +RD AH F I  HR+ R  AA S  L  I G+G    RLL   F  +  I  ++P 
Sbjct: 587 FLQHIRDTAHHFVIGRHRRARAGAALSAELLRIPGVGKATARLLWDHFKALDAIIAATPA 646

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            LA+I GI  + A  +     +
Sbjct: 647 QLAAIPGIGPRKAEALAGSLKR 668


>gi|257387133|ref|YP_003176906.1| excinuclease ABC subunit C [Halomicrobium mukohataei DSM 12286]
 gi|257169440|gb|ACV47199.1| excinuclease ABC, C subunit [Halomicrobium mukohataei DSM 12286]
          Length = 575

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 184/612 (30%), Positives = 285/612 (46%), Gaps = 52/612 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           +++ +P  PGVY    +A RVLYVGKA +L+ R++SY  ++  + RI  M+ +  +I F+
Sbjct: 9   AADVLPREPGVYHF--VADRVLYVGKAVDLRDRVRSY--ADPRSARIAQMVERAESIEFS 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE +ALLLEAN+IKR +P +N+ L+DDKS+P + +T  H +P +   RD      + 
Sbjct: 65  VTDTETQALLLEANLIKRHQPPYNVRLKDDKSYPLVQLT-DHPVPRIEVTRDPEE-GATV 122

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPF     VE  + +L+ T+ LR C+D  +  R RPCL +++  C+ PCTGEIS+  Y 
Sbjct: 123 YGPFTDKGRVETVVKALRETYGLRGCSDHKYEGRDRPCLDYEMGLCTAPCTGEISAVDYA 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E V   ++F  G    L + + R M  A+  +++E A   RD+L A+       D     
Sbjct: 183 EDVESVERFFGGETGVLADPLRREMAAASEAQEFERAANCRDKLEAVEAFHGDADDAVQT 242

Query: 242 M------DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D          A +       GQ        L         ++LS F+ Q+Y 
Sbjct: 243 TRDERAVDVLGAVREGERATVARLHAADGQLIDRERHGLDAPDGDGVGEVLSAFITQYYA 302

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           ++  PE +L SE        E       G  V + VP  G +  +++ AL NA R    +
Sbjct: 303 EREFPEAVLCSERP-----GEDVVEWLAGEGVDVRVPGAGREATLVDLALKNARRGGPAR 357

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
             T                      RIE +D SH  G + VG  V   +    K  YR+ 
Sbjct: 358 DDTAA---------LADALALDSADRIEGFDVSHAQGRAVVGSNVAFVDGDAAKRDYRRK 408

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            L        DD A MR ++  R  + I++ ++                    +DGG GQ
Sbjct: 409 KLTER----NDDYANMRELVRWRAKRAIEDRDDRPDPDLLL------------IDGGDGQ 452

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           L AA+  L     +  +  +++AK        E+  V        +  DP L+  QR+RD
Sbjct: 453 LGAARDALADTGWD--VPAVALAKD-------EELVVTPTGTHDWDDDDPKLHLCQRVRD 503

Query: 536 EAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           EAHRFA+  H+  R +     LDE+ G+GP  ++ LL+ FG+V  +  +S E L ++EG+
Sbjct: 504 EAHRFAVQYHQTVRDEVTT-ALDEVPGVGPETRKRLLRRFGSVDNVRAASTEELLAVEGV 562

Query: 596 SKKIACKIYNHF 607
               A  I +  
Sbjct: 563 GAGTAETIRSRL 574


>gi|162447172|ref|YP_001620304.1| excinuclease ABC subunit C [Acholeplasma laidlawii PG-8A]
 gi|161985279|gb|ABX80928.1| excinuclease ABC, subunit C [Acholeplasma laidlawii PG-8A]
          Length = 577

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 181/607 (29%), Positives = 298/607 (49%), Gaps = 47/607 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG Y MLD +G V+YVGKA NL+ R+ SY     H  +   +IS+I++  + VT +
Sbjct: 8   LPTEPGCYMMLDQSGEVIYVGKAKNLKNRVSSYFRGA-HNAKTEKLISEISDFNYIVTNS 66

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS-YFGP 124
           E E+L+LE N+IK+  P +NI L DDKS+PY+ IT+  K P L   R     +    FGP
Sbjct: 67  EQESLILEYNLIKKYAPLYNIRLIDDKSYPYLEITN-EKDPMLVVSRYIEVDKTKTLFGP 125

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + +  +  +T+  LQR + LR C        ++PCL + +  C GPC        Y   +
Sbjct: 126 YPNSKSARETLKLLQRLYPLRRCNPVD----SKPCLYYHMGLCLGPC--AHEKVDYKPNI 179

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
               +FL G    +  ++   M QA+   ++E A+ +RD + A+           N    
Sbjct: 180 ERITRFLKGDTKEVLNELEERMKQASEDLEFERAVEYRDMILAVKDTTEKQIMTLNDYKD 239

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  S  +N++   IQ      G+   T    +   ++    +    +++ +Y     P+
Sbjct: 240 RDFISFAYNEDDMAIQILMMRQGRILDTHKNVISYMTD--PYETFLTYIKNYYDKFLLPD 297

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++  ++     L       Q  +K K+ VPK G+K+K+++ A  NA    T       +
Sbjct: 298 ELVFDQQIPFKEL-------QMYFKNKVVVPKIGDKKKLVDLAHKNALEDLTHYYKLYRA 350

Query: 362 HQMILKDFTKK--FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +  L +  +            IE++DN+H+ G + +  M+V  +  F +  YRKF+L  
Sbjct: 351 KEEKLGEQIEALEQIFDKKISYIEVFDNAHLFGTAPISGMIVWKDYHFERKMYRKFHLKT 410

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
               T DD   M+ VL RR+ +L+  ++ L              PD++ +DGGKGQ+SAA
Sbjct: 411 T---TNDDYQAMKEVLYRRYQRLLVEKQKL--------------PDLICVDGGKGQVSAA 453

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
             V++  N++  I I+ + K       M + +V + E  +L+ + P+  F+ +L +E HR
Sbjct: 454 YEVIQLFNLD--IPILGLKKD---KYHMLEGYVIQNEVTILDKKSPLYQFLGQLSEEVHR 508

Query: 540 FAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           F IT H+K + +K   S LD I G+GP RK+ LL SF ++  I  +S E L SI G+  K
Sbjct: 509 FTITFHQKTKNRKDYTSVLDNIPGLGPTRKKKLLASFKSIDDIKNASTEDLRSI-GLPDK 567

Query: 599 IACKIYN 605
           +   I  
Sbjct: 568 VIKSIKE 574


>gi|296125102|ref|YP_003632354.1| excinuclease ABC, C subunit [Brachyspira murdochii DSM 12563]
 gi|296016918|gb|ADG70155.1| excinuclease ABC, C subunit [Brachyspira murdochii DSM 12563]
          Length = 613

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 176/627 (28%), Positives = 300/627 (47%), Gaps = 44/627 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P+  GVY M D    ++Y+GKA +L+KR+ SY +++N   + T ++  I +I + 
Sbjct: 12  KLKRIPDKSGVYFMKDNKETIIYIGKAKSLKKRVSSYFNNSNKDAKTTALVEHIRDIDYI 71

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-- 119
           +T  EVEAL+LEA MI++ KP +NILL+D KSFP+I +T++H  P + K R+    +   
Sbjct: 72  LTENEVEALILEAEMIRKHKPHYNILLKDQKSFPFIAVTNEH-FPRVIKARNVIDKENAK 130

Query: 120 ---SYFGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEI 175
               Y+GP+ + +  +  +  +   F LR C  D   +   RPCL + I +C+ PC   I
Sbjct: 131 KYKKYYGPYVAAEKADNIVKFVVENFKLRRCKYDFPLKKPIRPCLYYHIGKCTAPCADLI 190

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           + E Y + + +A   L G    L  ++ + M Q   K ++E+A   RD++  L +I    
Sbjct: 191 NEEDYDKTIDDAIMVLEGNVDELSVRLRQEMFQHAEKLEFEAAKDLRDKIDLLKYITVEQ 250

Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA--------- 283
                  + +D    Y       I       G+     TF +++ +              
Sbjct: 251 SIYIPESDDIDIIGAYGENGNYIIVILSVKGGKLADRKTFSMQSPNNDEYYAEKGVSKYS 310

Query: 284 QILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
           +ILS F  Q+YT        +  +       +   + KQ   +  + +     ++ ++  
Sbjct: 311 EILSAFFTQYYTHANLIPASISVDFPIIDIDIIKDYLKQISGRE-VDIRLDKSRKGLMAI 369

Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
           A  NA     +K         I +   + F L   P  IE +D +HI G   +  MV   
Sbjct: 370 ANENAKHIFKEKALIREVPLGITR-LQEIFKLKKAPSIIESFDIAHIQGSYTMAGMVRFV 428

Query: 404 ENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463
                   YR FN+    V   DD A ++  + RR+ +L                   ++
Sbjct: 429 NGVSDNKNYRIFNMKT--VTGIDDFASIKEAVYRRYKRLRDEN--------------LTF 472

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PD++++DGGKGQL++A   LK+L+++ +  I+++AK  +     E +   + E + LN  
Sbjct: 473 PDLILIDGGKGQLNSAIEALKELDIKGQ-PIMALAKKFE-----EIYLPNRNEPVRLNDN 526

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
           +P   F+Q++RDE HR+  T+H K+R +    S L+ ING+G      L   F  +  I 
Sbjct: 527 EPARLFLQKVRDETHRWVNTSHGKKRSREMVKSELEGINGLGKKGIEKLYAHFINIDNIK 586

Query: 583 RSSPETLASIEGISKKIACKIYNHFHK 609
            +S E++ +I GIS K+A  IY+HFHK
Sbjct: 587 NASFESIRNIPGISYKVANNIYDHFHK 613


>gi|224373024|ref|YP_002607396.1| excinuclease ABC subunit C [Nautilia profundicola AmH]
 gi|254764940|sp|B9L9T8|UVRC_NAUPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|223588867|gb|ACM92603.1| excinuclease ABC, C subunit [Nautilia profundicola AmH]
          Length = 611

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/638 (27%), Positives = 307/638 (48%), Gaps = 66/638 (10%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH------SNNHTHRITHMISQI 55
             + +P+ PG+YQ  D  G++LY+GKA +L+KR+KSY        ++N + RI  MIS+ 
Sbjct: 6   KIKSLPDQPGIYQYFDENGKLLYIGKAKSLKKRVKSYFRFNPFRPADNLSPRIYKMISEA 65

Query: 56  NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS 115
            ++ + V  +E +AL+LE ++IK+LKP++NILLRDDK++PYI I      P     R   
Sbjct: 66  KDLNYIVVESENDALILENSLIKQLKPKYNILLRDDKTYPYIYIDLDEPFPMPQITRKVV 125

Query: 116 TIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
             +   YFGPF+S  +    + ++     L            + CL  QI RC  PC G+
Sbjct: 126 KGKNIKYFGPFSSGAS--AILKTIYEEIPLVQSK--SCLRSGKACLYHQIGRCLAPCEGK 181

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           ++S +YM++V +A + +      + E + + M +      +E A   RDR+ ++   + +
Sbjct: 182 VTSREYMKYVDQAIELIHDK-EKILEILNQKMQKYAENLQFEEAAEIRDRIKSIESAEIY 240

Query: 235 NDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291
           +         +D F++      A +   F   G+   +    + + +     +I +  + 
Sbjct: 241 SHVDLAKLEDLDIFAVEIFNKKAVVIRIFVRQGKVVASSNSVINSQTVPEIGEIYTRAIL 300

Query: 292 QFYTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
           +FY+ +       IL+ ++ EE   L     +++G K+ I  P   E++ +I+ A +NA 
Sbjct: 301 EFYSTETPFTSSKILVGDDFEEREWLSQVLSEKFGKKISIITPTTKERKSLIKLAKLNAL 360

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                 +        +L +    F L + P +IE++D SH+ G + VG MVV  +  F K
Sbjct: 361 E-----VIKNQKENTVLDELKILFNLQNTPYKIEVFDTSHMQGEATVGAMVVWEDGKFKK 415

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           + YR ++L       +D+ + MR +L R                + Q +     PD+ ++
Sbjct: 416 SDYRHYHLE-----GKDEYSQMRELLTR----------------RAQSFEKSPPPDLWLI 454

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAK--------GPKRSAGMEKFFVKKG------ 515
           DGGK QL+ A+ ++        I +++I+K          K  A  + +F+ +       
Sbjct: 455 DGGKAQLNLAKEIIDSTG--ANIDVLAISKEKIDAKAHRAKGKAKDKIYFINEKLKVKSE 512

Query: 516 ----EALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRL 570
               + L L+  D  L F+Q LRDEAHRFAI  HRK +RKK     L ++ GIG  +   
Sbjct: 513 KLNIDKLELSQSDKRLQFLQMLRDEAHRFAIEFHRKTKRKKDTQIDLLQVKGIGKAKMTK 572

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           LL  FG+   I ++S + L  +  +++K A  I   F 
Sbjct: 573 LLNYFGSFDNIKKASFDELKDV--LNEKDAKAIKEFFK 608


>gi|76801195|ref|YP_326203.1| excinuclease ABC subunit C [Natronomonas pharaonis DSM 2160]
 gi|90111070|sp|Q3ITA0|UVRC_NATPD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|76557060|emb|CAI48634.1| excinuclease ABC chain C [Natronomonas pharaonis DSM 2160]
          Length = 575

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/607 (31%), Positives = 294/607 (48%), Gaps = 55/607 (9%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVYQ    AG  VLYVGKA +L++R++SY      + RI  M+     + F VT
Sbjct: 12  ELPAEPGVYQF--EAGESVLYVGKAVDLRERVRSY--VAPRSDRIRRMVEAAAAVDFAVT 67

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +T     P +   R       + FG
Sbjct: 68  DTETQALLLEANLIKRHQPRYNVRLKDDKSYPLVQLTAHEA-PRIEITRTP-DEAATVFG 125

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+     VE  + +L+ T+ LR C+D  +  R RPCL +++  CS PCTGEI ++ Y E 
Sbjct: 126 PYTDKSRVETVVKALRETYELRGCSDHKYEGRDRPCLDYELGLCSAPCTGEIDTDAYAED 185

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242
           V  A++F  G    L E + R M  A   + +E A   RDRL A+           +   
Sbjct: 186 VESARRFFDGETGVLAEPLRREMETAAASQAFERAASLRDRLEAVETFHEGGSEAVSGRG 245

Query: 243 ----DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE-STNAQILSYFLRQFYTDK 297
               D   +      A +       G+        +   ++  +   +L+ F+ QFY ++
Sbjct: 246 GRRLDVLGVAVEGESATVARLRSEDGKLVERDRHRVDAPADAESVPSVLAAFIPQFYAER 305

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ +LLSE  ++  L +    +     V I VP  G    ++E AL NA R+  +   
Sbjct: 306 SLPDVLLLSERYDDEELDQWLHAEG----VDIRVPGAGRAATLVELALKNARRTTAEADG 361

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                + +  D          P+RIE +D SH  G  AVG  VV  +       YR+ +L
Sbjct: 362 PTALARRLGID---------RPERIEGFDVSHAGGKDAVGSNVVFVDGSPETADYRRRSL 412

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                   DD A MR ++  R ++ ++  ++               PD++++DGG GQL 
Sbjct: 413 DDE----NDDYANMRRLVRWRATRAVEGRDDR------------PTPDLLLIDGGDGQLG 456

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD-PILYFIQRLRDE 536
           AAQ  L +   +  +  I++AK        E      G A   +  D P L  +QR+RDE
Sbjct: 457 AAQDALAETGWD--VPAIALAKAD------ELVVTSDGVA---DWDDGPALRLLQRVRDE 505

Query: 537 AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           AHRFA+  H++ R  A  +PLD + G+GP  +  LL+ FGTV  +  +S E L  ++G+ 
Sbjct: 506 AHRFAVQYHQQVRD-AVSTPLDSVPGVGPELRERLLKRFGTVDGVRSASREELERVDGVG 564

Query: 597 KKIACKI 603
           +  A  I
Sbjct: 565 EDTAAAI 571


>gi|330443842|ref|YP_004376828.1| excinuclease ABC subunit C [Chlamydophila pecorum E58]
 gi|328806952|gb|AEB41125.1| excinuclease ABC, C subunit [Chlamydophila pecorum E58]
          Length = 597

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 183/607 (30%), Positives = 292/607 (48%), Gaps = 39/607 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            + +P+ PGVY M D  G+VLYVGKA NL+ RI  Y H       RI  ++ +   +   
Sbjct: 8   LDLIPKTPGVYLMKDSQGKVLYVGKAKNLRNRIAMYFHKKGDVRERIPFLMQKTAFLETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR---DSSTIQ 118
               E EALLLE N+IK+  P++N+LL+DDK+F  + I+ +H  P +   R     ST Q
Sbjct: 68  TVSNETEALLLENNLIKKYHPKYNVLLKDDKTFFCLAISLQHPWPKIEAIRCRSVHSTKQ 127

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
              FGP+ S +A    ++ L   F LR+C+D  F  R RPC+L+++KRC  PC    S E
Sbjct: 128 HLIFGPYVSSEACRALLDVLGLWFPLRTCSDKEFAIRKRPCVLYEMKRCLAPCVNLCSHE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y   + +A  FL G    +  ++   +  A+ +  +E A  +   L  +       +  
Sbjct: 188 EYQAVLEKAILFLKGKMDEVISQLESAIQTASKQLKFEQAAAYYRTLTLIKQAMTKQNVE 247

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               + +D   LY N+    +       G+  G   +    +++     +L+ F+ QFYT
Sbjct: 248 KFHMHNIDAIGLYRNQQQTVLTILTVRSGKLLGAKHYTFFENAQED-QDVLTSFILQFYT 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           D+      +LS       L         G    I  PK G +R+++  A  NA       
Sbjct: 307 DQTRLPQEILSPLPLTPQLGS---LLHKGSPPHIRAPKTGYRRELVMLAKHNAEE---FA 360

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
            ++  S  +  ++      +   P RIE YDNSH+ G  A+G  +V   +  V   YR F
Sbjct: 361 KTSSQSVHLPYEEMKTMLNIKECPYRIECYDNSHLQGTHAIGVYIVFENDRLVPQHYRTF 420

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           +L P+    ++D   +  VL RRFS L                     P+++++DGG+  
Sbjct: 421 SLTPS--VAKNDLRALEEVLLRRFSSLT-----------------SPLPNMIVIDGGRSH 461

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAG---MEKFFVKK-GEALVLNMRDPILYFIQ 531
              A+ +L+ LN+   I I+S+AK     +     EK +     + + L     +L F Q
Sbjct: 462 YICAKKILETLNLTG-IEIVSLAKEASNHSASLTREKIYTDTFPKGVQLLPTAKVLQFFQ 520

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            LRDEAHRFAI THRK+R K  ++  ++I GIG ++   LL+ F + K + ++S E L +
Sbjct: 521 LLRDEAHRFAIHTHRKKRNKELFTQ-EKIPGIGKVKYERLLKHFKSWKNVMKASQEELET 579

Query: 592 IEGISKK 598
           I G+++K
Sbjct: 580 IPGLTQK 586


>gi|329943171|ref|ZP_08291945.1| excinuclease ABC, C subunit [Chlamydophila psittaci Cal10]
 gi|332287752|ref|YP_004422653.1| excinuclease ABC subunit C [Chlamydophila psittaci 6BC]
 gi|325507018|gb|ADZ18656.1| excinuclease ABC subunit C [Chlamydophila psittaci 6BC]
 gi|328814718|gb|EGF84708.1| excinuclease ABC, C subunit [Chlamydophila psittaci Cal10]
          Length = 629

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/595 (28%), Positives = 286/595 (48%), Gaps = 38/595 (6%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCTEVEALLLE 73
           M D +G VLY+GKA NL+ RI +Y      +  RI  ++ +  +I   +   E EA LLE
Sbjct: 1   MKDSSGEVLYIGKAKNLRNRISTYFRKQGDSRERIPFLMKKTTDIETILVSNETEAFLLE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQGSYFGPFASVDA 130
            N+IK+  P++N+LL+DDK+F  + I+  H  P +   R     S+ +   FGP+ S +A
Sbjct: 61  NNLIKKYHPKYNVLLKDDKTFFCLAISLTHLWPKIDVIRTKAVTSSKKQIIFGPYVSAEA 120

Query: 131 VEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKF 190
               +  + + F LR+C++  F  R RPC+L+++KRC  PC    S E+Y + + +A  F
Sbjct: 121 CRTLLEVISQWFPLRTCSNREFASRKRPCILYEMKRCLAPCVNLCSHEEYEQTLEKAILF 180

Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFSL 247
           L G    + + + +++ +A+ ++ +E A ++   L  +             +  +D   L
Sbjct: 181 LKGQVSEVVQDLEKSIEKASKEQKFEQAGMYYRTLQLIQQAMVKQHVEKFHFQNIDAIGL 240

Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSE 307
           Y       I       G+  G   F    +++     + S+ L+ + +    P+ IL   
Sbjct: 241 YRKYQKTVITILTIRSGKLLGARHFPFSENAQEDADLLASFILQYYTSQPQTPKEILTPI 300

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
                 L             ++  PK G  R+++  A  NA       +    S  +  +
Sbjct: 301 PLNIPDLP---CLLNKDTPPQLRSPKTGYGRELLNLAKNNAQVHAETTI---QSSALPYE 354

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           +  K       P RIE YDN+H+ G  AVG  +V   +      YR F++  +     +D
Sbjct: 355 ELKKILKSSDYPYRIECYDNAHLQGSHAVGVYIVYENDALSPKDYRTFSISSS---AYND 411

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A  R VL RRF+ L                   S PD++++DGG+ Q + A+  LK+LN
Sbjct: 412 LAAFREVLSRRFTSLT-----------------SSIPDMILIDGGRTQYAQAKKTLKELN 454

Query: 488 VENRITIISIAKGPKRSA---GMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           +   I ++SIAK     +     EK F     + ++L     +L F Q+LRDEAHRFAI+
Sbjct: 455 LTG-IQVVSIAKEAGSHSSSLKKEKLFCDTFPQGVLLPPTSKLLQFFQKLRDEAHRFAIS 513

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            HRK+R K    P ++I GIG ++++ LLQ F + + + ++S   L +I G++KK
Sbjct: 514 RHRKKRHKDFLLPKEKIPGIGEIKRKRLLQKFKSWEQVMKASQGELEAIPGLTKK 568


>gi|283783279|ref|YP_003374033.1| excinuclease ABC, C subunit [Gardnerella vaginalis 409-05]
 gi|297243494|ref|ZP_06927426.1| excinuclease ABC subunit C [Gardnerella vaginalis AMD]
 gi|283441822|gb|ADB14288.1| excinuclease ABC, C subunit [Gardnerella vaginalis 409-05]
 gi|296888539|gb|EFH27279.1| excinuclease ABC subunit C [Gardnerella vaginalis AMD]
          Length = 780

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/718 (24%), Positives = 292/718 (40%), Gaps = 113/718 (15%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
           +S  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 68  ASRDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQSMVLTARSLEW 127

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE EAL LE   IK   PRFN++ RDDK++PY+ ++ +   P ++  R+ S     
Sbjct: 128 TVVSTEFEALTLEYTWIKAFNPRFNVVFRDDKTYPYVAVSLEETFPRVWITRNRSARHAR 187

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  +++SL +TF +R+C+ SVF       RPCL   I +CS PC G I  
Sbjct: 188 YFGPYAKVWPLRHSLDSLLKTFPIRTCSSSVFSKAHRTGRPCLFASIGKCSAPCIGNIDP 247

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            ++ + V      L+G    +   +I   M +A+ + ++E A   RD +A L+ I   N 
Sbjct: 248 SEHRKMVEHVVGILTGSVGESYISQIKNEMKEASEELEFERAAKLRDEIAVLNTILQQNA 307

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F    ++  A I   F   G  RG   + ++ +   +++ +++  L + 
Sbjct: 308 VVFDNDVEADVFGFCGDELEASIHVFFVRAGMIRGEKNWSVERNEHISDSDLIADLLTRV 367

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQY------------------------------ 323
           Y +          +      + +     Q                               
Sbjct: 368 YAEYEQNYTQNHEDTISIKKVRDAVSSTQQATATDVILRAQATKTRRERQERTGREDLLA 427

Query: 324 -----GYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI 378
                  ++ + +    E+++ +E  L N   S       E   +  L D     A   +
Sbjct: 428 PISPVPREIIVPIKISDERKQELELWLSNIRGSQVSIRVAERGEKRALMDRANDNASQEL 487

Query: 379 PKRIEIYDNSHIMGCSAV--------------------------GCMVVVGE-----NGF 407
            +      NS  M   A+                          G   V           
Sbjct: 488 KRIKSSRINSIDMRTEAMNEIAKALGMSKSPLRIECYDISNTVDGSYQVASMVVFEDGVA 547

Query: 408 VKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEEN------------------ 448
             ++YR F +       + DD + +   L RRF       EN                  
Sbjct: 548 RPSEYRHFAVRGEHGDGKIDDLSAVYETLLRRFKHKDVYAENRLDASDSSDTSDTSDSSD 607

Query: 449 -------------LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495
                         + +       F   P ++I+DGGK Q  AA+  ++   V + IT+ 
Sbjct: 608 INICDANSISNKHFSGNSLTSARHFAYKPQLIIVDGGKEQAKAAKRAMRDAGVSD-ITVC 666

Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAY 554
            +AK  +     E +   +   ++       LY +QR RDE+HRFAI+ HRK R+K + +
Sbjct: 667 GLAKKLE-----EVWLPDEDYPIIFKRSSEGLYLLQRARDESHRFAISYHRKLRRKGSLH 721

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           S  D I GIG + ++ LL SFG++K +  +S E L  + GI +  A  IY+   KN  
Sbjct: 722 STFDAIPGIGAVYRKRLLASFGSIKSLKNASLEDLQKVPGIGENKAKAIYSALRKNND 779


>gi|257452764|ref|ZP_05618063.1| excinuclease ABC subunit C [Fusobacterium sp. 3_1_5R]
 gi|317059305|ref|ZP_07923790.1| excinuclease ABC subunit C [Fusobacterium sp. 3_1_5R]
 gi|313684981|gb|EFS21816.1| excinuclease ABC subunit C [Fusobacterium sp. 3_1_5R]
          Length = 590

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/612 (29%), Positives = 292/612 (47%), Gaps = 39/612 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M     +V+YVGKA NL KR+KSY        +   ++  I +I + +  
Sbjct: 7   DIPENPGVYLMK-EKNKVIYVGKAKNLHKRVKSYFQKEVDREKTRELVKHIEDIEYILCP 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           +E++ALLLE N+IK+  P++NI L+D+K++PY+ +T K   PA +  R S         Y
Sbjct: 66  SELDALLLENNLIKKYNPKYNIALKDEKTYPYLSLT-KETFPAFHMIRKSKHLDLEHREY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       K    L + F +R C   + +   RPCL + +K C GPC  +   E+Y 
Sbjct: 125 FGPYP--FGAWKLKKILLKLFKIRDCFWDMNKKYKRPCLKYDMKTCLGPCVHKEVQEEYQ 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             V + ++ L G   +  +++   M +   K ++E AII R+++  L++++    S Y  
Sbjct: 183 AMVAKVREVLKGNTKDCIQELRVQMEEMAEKFEFEKAIILREQIQELANLEKEQISEYGK 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      +   +       G+  G  +       E     +    L  +Y   P
Sbjct: 243 EVDEDIFVWKEVFDRMFLCVLNVREGKILGKISNNFLL-EEKVYENLEEELLLSYYRKYP 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII--EQALINAHRSHTQKL 356
            P++I+  E+ +E     +   +    +   +   + + R++   E AL+N  +      
Sbjct: 302 IPKSIVFEEKQQEVLKEGLIHLELMFDRKIESYYPKIKSRRLELLEMALLNLEKDIENFH 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             +   +  +K+      L H P+RIE +D S+I G  AV  M V  E    K +YRKF 
Sbjct: 362 LKKEVIEDGMKELYSFLGLKHFPRRIECFDISNIQGKDAVASMSVSIEGKAAKGEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD AMMR V+ RR+S+L   +                +PDV+++DGG GQ+
Sbjct: 422 IQCKDTP--DDFAMMREVIYRRYSKLEPKD----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  +L++L       ++S+AK  +     E +   +     ++     L   QR+RDE
Sbjct: 464 NSAGAILEELGKIQFTDLLSLAKRDE-----EVYKYGETLPYSISKDKEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K    S LD I GIG +R++ LL+ F +V  +  +S E L     +
Sbjct: 519 AHRFGITYHRKLRSKRVISSELDHIEGIGEVRRKKLLKRFSSVSGVKAASLEELEEC--V 576

Query: 596 SKKIACKIYNHF 607
            K++A +I    
Sbjct: 577 PKQVAIRIKEEL 588


>gi|89897991|ref|YP_515101.1| excinuclease ABC subunit C [Chlamydophila felis Fe/C-56]
 gi|119367640|sp|Q255T2|UVRC_CHLFF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|89331363|dbj|BAE80956.1| excinuclease ABC complex nuclease subunit C [Chlamydophila felis
           Fe/C-56]
          Length = 604

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 185/608 (30%), Positives = 299/608 (49%), Gaps = 40/608 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFT 61
            + +P  PGVY M D +G VLY+GKA NL+ RI +Y      +  RI  ++ +  +I   
Sbjct: 8   PKIIPPSPGVYLMKDSSGEVLYIGKAKNLRNRITTYFQKQGDSRERIPFLMKKTTDIETI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118
           +   E EALLLE N+IK+  P++N+LL+DDK+F  + I+  H  P +   R     S+ +
Sbjct: 68  LVSNETEALLLENNLIKKYHPKYNVLLKDDKTFFCLAISLSHPWPRIDAIRTKAVTSSKK 127

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
              FGP+ S +A +  +  + + F LR+C++  F  R RPC+L+++KRC  PC    S E
Sbjct: 128 QIVFGPYVSAEACQTLLEVIGQWFPLRTCSNREFSTRKRPCILYEMKRCLAPCVNFCSQE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
           +Y E + +A  FL G    + +K+ +++ +A+ ++ +E A ++   L  +          
Sbjct: 188 EYAETLEKAVLFLKGQVSEIIQKLEKSIEKASQEQKFEQAGMYYRTLKLIQQAMVKQHVE 247

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
              +  +D   LY       I       G+  G   F    +++   + +LS F+ Q+Y 
Sbjct: 248 KFHFQNIDAIGLYRKHQETVITVLTIRSGKLLGARHFPFSENAQED-SDLLSSFILQYYA 306

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           ++P  P+ IL         L  +   +       I  PK G  ++++  A  NA      
Sbjct: 307 NQPHIPKEILTPFSLNIPDLPHLLNKEAPPR---IRSPKTGYGKELLNLAKNNAEMHAQT 363

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            +    S  +  ++  K       P RIE YDN+H+ G  AVG  +V   N      YR 
Sbjct: 364 SV---QSSVLPYEEMKKILKTQDYPYRIECYDNAHLQGSHAVGVYIVYENNALSPKNYRT 420

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +  +     +D A    VL RRFS                  +    PD++++DGG+ 
Sbjct: 421 FAISSS---AHNDLAAFHEVLSRRFS-----------------STSSPLPDMIVIDGGRL 460

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAG---MEKFFVKK-GEALVLNMRDPILYFI 530
           Q S A+  LKKLN+   I I+SIAK     +G    EK F     + + L     +L F 
Sbjct: 461 QYSQAKKTLKKLNLTG-IQIVSIAKEASNHSGSLRHEKLFCDIFPQGIQLPPTSKLLQFF 519

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           Q+LRDEAHRFAI+ HRK+R +    P ++I GIG ++++ LL+ F + K + ++S   L 
Sbjct: 520 QKLRDEAHRFAISKHRKKRSRDLLLPQEKIAGIGEVKRKRLLKKFKSWKQVMQASQGELE 579

Query: 591 SIEGISKK 598
           +I G++KK
Sbjct: 580 TIPGLTKK 587


>gi|270284959|ref|ZP_06194353.1| excinuclease ABC subunit C [Chlamydia muridarum Nigg]
 gi|301336357|ref|ZP_07224559.1| excinuclease ABC subunit C [Chlamydia muridarum MopnTet14]
          Length = 579

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 183/603 (30%), Positives = 280/603 (46%), Gaps = 42/603 (6%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCTEVEALLLE 73
           M D  G VLYVGKA NL+ R+ SY+  N  +  RI  ++ +  +I   V   E EALLLE
Sbjct: 1   MKDSQGVVLYVGKAKNLRNRLSSYLQKNGDSRERIPFLMKRTADIDTIVVSNETEALLLE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD----SSTIQGSYFGPFASVD 129
            N+IK+ +PR+N+LL+DDK+F  + I+ +H  P +   R      S  +   FGP+ S +
Sbjct: 61  NNLIKKYQPRYNVLLKDDKTFFCLSISLQHPWPKIEAIRTRALSPSKKKQLLFGPYVSAE 120

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
           A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S  +Y E + +A  
Sbjct: 121 ACYALLEVISHWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGFCSQTEYQETLEKAIL 180

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFS 246
           FL G        +   + +A+ +  +E A      L  +                +D   
Sbjct: 181 FLKGEVDTTIANLEEAIKKASQEHKFEHAAALYRTLTLIRQTMAKQHVEKFQAYDIDVLG 240

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           LY    LA I     + G+  G   F    +++  ++   S+ L+ +  +   P+ I + 
Sbjct: 241 LYRKGPLAIISVLSVYSGKLLGARHFTFPENAQEDSSLFSSFILQYYAENTRIPKQIFVP 300

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
              +   L    +        KI  PK    ++++  A  NA            S  +  
Sbjct: 301 VSPDSPELP---YLLNAAEPPKIRCPKTEYGKELLALAHKNAAEQAKPL----NSITLPY 353

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++  + F     P RIE YDN+H+ G   VG  +V  +  F   QYR F++        D
Sbjct: 354 EELQQLFKFSQYPNRIECYDNAHLQGEHNVGVYIVFEKGSFSPKQYRTFSI----TSHGD 409

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A    VL RRF  L                     PD++++DGG+ Q   AQ +L+KL
Sbjct: 410 DLAAFEEVLTRRFRSLTTE-----------------LPDLIVIDGGRNQFRRAQHILEKL 452

Query: 487 NVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
           N+   I ++SIAK      R    EK F +   + ++LN    IL F Q LRDEAHRFAI
Sbjct: 453 NLTG-IAVVSIAKESGNHSRGLQQEKLFCEAFPQGILLNPTSEILQFFQLLRDEAHRFAI 511

Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
             +R +  KA  +   +I GIG  +   LLQ F + K I  +S E L +++G++KK   +
Sbjct: 512 NRYRNKHSKAILTT-KKIPGIGKTKTTHLLQKFKSWKRILSASEEELKTVQGLTKKDIQR 570

Query: 603 IYN 605
           I  
Sbjct: 571 IQE 573


>gi|332141513|ref|YP_004427251.1| excinuclease ABC subunit C [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551535|gb|AEA98253.1| excinuclease ABC subunit C [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 544

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 172/533 (32%), Positives = 278/533 (52%), Gaps = 24/533 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +  G V+YVGKA NL+KR+ SY  ++    +   ++SQI ++  TV
Sbjct: 10  LKNLTSQPGVYRMYNSQGEVIYVGKAKNLKKRVSSYFRTHLDNAKTRSLVSQIADMDVTV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E EA LLE N IK+ KPR+N+++RDDKS+P+I ++  H+ P L  HR     +G YF
Sbjct: 70  VNSETEAFLLENNFIKKYKPRYNVVMRDDKSYPFIFLS-DHEHPRLSFHRGPQKKKGEYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181
           GP+ S  +V +++ S+QR F +R C DS +R R+RPCL +Q++RCS PC    +S E+Y 
Sbjct: 129 GPYPSAWSVRESLRSMQRIFPVRQCEDSYYRARSRPCLQYQMQRCSAPCVEGYVSDEEYK 188

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--IY 239
           E V+ A+ FL G N  +  ++   M +A+   ++E+A  +RD++ AL  +Q         
Sbjct: 189 EQVNFARLFLKGKNQQVIGELVEKMEKASEALNFEAAARYRDQINALRKVQERQWVAGTQ 248

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DK 297
           + MD F      N+ACIQ  F   GQ  G+  FF K  + +   ++   F  QFY   +K
Sbjct: 249 DEMDVFGFALKGNMACIQVMFIREGQLLGSKAFFPKVPNIADEQEVFESFFLQFYLAGNK 308

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I+LS    +   +      + G+KV      + EKRK ++ A  NA  +   + S
Sbjct: 309 VIPKQIVLSNSLNDEEAIAKVLASEAGHKVHFFKGAREEKRKYLQLAQSNAQAALDAQYS 368

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + S      D      +    +R+E +D SH  G   V   VV    G +K+ YR++N+
Sbjct: 369 QQKSVFARYLDLEGALEVDTPIQRMECFDISHTSGQQTVASCVVFNREGPLKSDYRRYNI 428

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M   L+RR+  + + ++                PD++ +DGGKGQL+
Sbjct: 429 EG--ITPGDDYAAMAQALKRRYKSVKEVQK---------------IPDLLFIDGGKGQLA 471

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYF 529
            A+   ++   + +  ++ +AKG  R  G+E   +    E L ++   P L  
Sbjct: 472 QAEAFFEEWPHDKKPMLLGVAKGTTRKPGLETLILAGSHEVLPMDSHSPGLTL 524


>gi|298252784|ref|ZP_06976578.1| excinuclease ABC subunit C [Gardnerella vaginalis 5-1]
 gi|297533148|gb|EFH72032.1| excinuclease ABC subunit C [Gardnerella vaginalis 5-1]
          Length = 779

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 292/717 (40%), Gaps = 112/717 (15%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
           +S  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 68  ASRDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQSMVLTARSLEW 127

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE EAL LE   IK   PRFN++ RDDK++PY+ ++ +   P ++  R+ S     
Sbjct: 128 TVVSTEFEALTLEYTWIKAFNPRFNVVFRDDKTYPYVAVSLEETFPRVWITRNRSARHAR 187

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V ++  +++SL +TF +R+C+ SVF       RPCL   I +CS PC G I  
Sbjct: 188 YFGPYAKVWSLRHSLDSLLKTFPIRTCSSSVFSKAHRTGRPCLFASIGKCSAPCIGNIDP 247

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            ++ + V      L+G    +   +I   M +A+ + ++E A   RD +A L+ I   N 
Sbjct: 248 SEHRKMVEHVVGILTGSVGESYISQIKNEMKEASEELEFERAAKLRDEIAVLNTILQQNA 307

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F    ++  A I   F   G  RG   + ++ +   +++ +++  L + 
Sbjct: 308 VVFDNDVEADVFGFCGDELEASIHVFFVRAGMIRGEKNWSVERNEHISDSDLIADLLTRV 367

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQY------------------------------ 323
           Y +          +      + +     Q                               
Sbjct: 368 YAEYEQNYTQNHEDTISIKKVRDAVSSTQQATATDVILRAQATKTRRERQERTGREDLLA 427

Query: 324 -----GYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI 378
                  ++ + +    E+++ +E  L N   S       E   +  L D     A   +
Sbjct: 428 PISPVPREIIVPIKISDERKQELELWLSNIRGSQVSIRVAERGEKRALMDRANDNASQEL 487

Query: 379 PKRIEIYDNSHIMGCSAV--------------------------GCMVVVGE-----NGF 407
            +      NS  M   A+                          G   V           
Sbjct: 488 KRIKSSRINSIDMRTEAMNEIAKVLGMSKSPLRIECYDISNTVDGSYQVASMVVFEDGVA 547

Query: 408 VKNQYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEEN------------------ 448
             ++YR F +       + DD + +   L RRF       E+                  
Sbjct: 548 RPSEYRHFAVRGEHGDGKTDDLSAVYETLLRRFKHKDVYVEDRLDTNASDSSDISDSSDI 607

Query: 449 ------------LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496
                        + +       F   P ++I+DGGK Q  AA+  +K   V + IT+  
Sbjct: 608 NICDANSISNKHFSANSLTSARHFAYKPQLIIVDGGKEQAKAAKRAMKDAGVSD-ITVCG 666

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYS 555
           +AK  +     E +   +   ++       LY +QR RDE+HRFAI+ HRK R+K + +S
Sbjct: 667 LAKKLE-----EVWLPDEDYPIIFKRSSEGLYLLQRARDESHRFAISYHRKLRRKGSLHS 721

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             D I GIG + ++ L  SFG++K +  +S E L  + GI +  A  IY+   KN  
Sbjct: 722 TFDAIPGIGAVYRKRLFASFGSIKSLKNASLEDLQKVPGIGENKAKAIYSALRKNND 778


>gi|257466867|ref|ZP_05631178.1| excinuclease ABC subunit C [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918015|ref|ZP_07914255.1| excinuclease ABC subunit C [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691890|gb|EFS28725.1| excinuclease ABC subunit C [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 590

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/612 (28%), Positives = 291/612 (47%), Gaps = 39/612 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M     +V+YVGKA NL KR+KSY        +   ++  I +I + +  
Sbjct: 7   DIPENPGVYLMK-EKNKVIYVGKAKNLYKRVKSYFQKEVDREKTRELVKHIEDIEYILCP 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           +E++ALLLE N+IK+  P++NI L+D+K++PY+ +T K   PA +  R S         Y
Sbjct: 66  SELDALLLENNLIKKYNPKYNIALKDEKTYPYLSLT-KETFPAFHMIRKSKHLDLEHREY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       K    L + F +R C   + +   RPCL + +K C GPC  +   E+Y 
Sbjct: 125 FGPYP--FGAWKLKKILLKLFKIRDCFWDMNKKYKRPCLKYDMKTCLGPCVHKEVREEYQ 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
             V + ++ L G   +  +++   M +   K ++E AII R+++  L++++    S Y  
Sbjct: 183 AMVAKVREVLKGNTKDCIQELRVQMEEMAEKFEFEKAIILREQIQELANLEKEQISEYGK 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F      +   +       G+  G  +       E     +    L  +Y   P
Sbjct: 243 EVDEDIFVWKEVFDRMFLCVLNVREGKILGKISNNFLL-EEKVYENLEEELLLSYYRKYP 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII--EQALINAHRSHTQKL 356
            P++I+  E+ +E     +   +    +   +   + + R++   E A +N  +      
Sbjct: 302 IPKSIVFEEKQQEVLKEGLIHLELMFDRKIESYYPKIKSRRLELLEMAFLNLEKDIENFH 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             +   +  +K+      L H P+RIE +D S+I G  AV  M V  E    K +YRKF 
Sbjct: 362 LKKEVIEDGMKELYSFLGLKHFPRRIECFDISNIQGKDAVASMSVSIEGKAAKGEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD AMMR V+ RR+S+L   +                +PDV+++DGG GQ+
Sbjct: 422 IQCKDTP--DDFAMMREVIYRRYSKLEPKD----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  +L++L       ++S+AK  +     E +   +     ++     L   QR+RDE
Sbjct: 464 NSAGAILEELGKIQFTDLLSLAKRDE-----EVYKYGETLPYSISKDKEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K    S LD I GIG +R++ LL+ F +V  +  +S E L     +
Sbjct: 519 AHRFGITYHRKLRSKRVISSELDHIEGIGEVRRKKLLKRFSSVSGVKVASLEELEEC--V 576

Query: 596 SKKIACKIYNHF 607
            K++A +I    
Sbjct: 577 PKQVAIRIKEEL 588


>gi|222481129|ref|YP_002567366.1| excinuclease ABC, C subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|254764935|sp|B9LUM9|UVRC_HALLT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|222454031|gb|ACM58296.1| excinuclease ABC, C subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 592

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 188/625 (30%), Positives = 299/625 (47%), Gaps = 66/625 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVYQ        LYVGKA NL+ R++SY  ++  + RI  M+ + + I F VT 
Sbjct: 12  DLPTEPGVYQFR-AGETTLYVGKAVNLRNRVRSY--ADPRSGRIRGMVGRADRIEFAVTD 68

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLEAN+IKRL+PR+N+ L+DDKS+P + IT  H +P +   RD        +GP
Sbjct: 69  TETQALLLEANLIKRLRPRYNVRLKDDKSYPLVAIT-DHPVPRIEVTRDPEE-GAVAYGP 126

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S   VE  + +++  + LR C+D  + +R RPCL +++  CS PCTGEI  E Y E V
Sbjct: 127 FTSKGRVETVVKAIRDEYRLRGCSDHKYANRDRPCLDYEMGICSAPCTGEIDPESYAEDV 186

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH------NDSI 238
             A++F  G    L + + R M  A    ++E A   RDRL A+            + S 
Sbjct: 187 AAARRFFEGETGVLADPLRRRMEAAAENAEFERAANLRDRLEAVEAFHGEGGEAVSDHSD 246

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK----------------TDSESTN 282
              +D  +     + A +       GQ        L                     +T 
Sbjct: 247 DRTVDVLAAAVEGDTARVARLHSERGQLVDRSRHRLDAAAVGDDGEGDEDGFADPDANTP 306

Query: 283 AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
           A +LS FL Q+Y ++  P+ ILL+E   +  +++    +     V + VP  G + K++E
Sbjct: 307 AAVLSAFLTQYYAEREFPDAILLAERPSDPDVIDWLEAEG----VSVRVPGAGREAKLVE 362

Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402
            AL NA +   ++       + +  D          P RIE +D SH  G + VG  V  
Sbjct: 363 LALKNARKRGGREDPVGALGERLGID---------RPARIEGFDVSHAQGTAVVGSDVCF 413

Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462
            +     + YR+  L        DD A MR ++  R  + +  E++              
Sbjct: 414 VDGSAETSDYRRKKLTDR----NDDYANMRELVRWRAERAVAGEDDRPD----------- 458

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            PD++++DGG GQL AA+  L +   +  + ++++AK        E+  V          
Sbjct: 459 -PDLLLIDGGGGQLGAARDALAETGWD--VPVVALAK-------AEELVVTPTGTRRWPD 508

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
             P L+ +QR+RDEAHRFA++ H+  R +   + LD++ G+GP  +R LL+ FG+V+ + 
Sbjct: 509 DAPELHLLQRVRDEAHRFAVSYHQTVRDE-VKTVLDDVPGVGPQTRRRLLRRFGSVESVR 567

Query: 583 RSSPETLASIEGISKKIACKIYNHF 607
            +S + L  ++G+    A  +    
Sbjct: 568 DASLDDLTDVDGVGDATADTLRERL 592


>gi|149194567|ref|ZP_01871663.1| excinuclease ABC subunit C [Caminibacter mediatlanticus TB-2]
 gi|149135311|gb|EDM23791.1| excinuclease ABC subunit C [Caminibacter mediatlanticus TB-2]
          Length = 606

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 308/636 (48%), Gaps = 59/636 (9%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH------SNNHTHRITHMISQI 55
             + +P+ PGVYQ  D  G++LY+GKA +L+KR+KSY        ++N + RI  MIS+ 
Sbjct: 4   KIKSLPDKPGVYQYFDENGKLLYIGKAKSLKKRVKSYFRFNPFRPADNLSPRIYKMISEA 63

Query: 56  NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS 115
            +I + V  +E +AL+LE ++IK+LKP++NILLRDDK++PYI +    + P L   R   
Sbjct: 64  KDINYIVVESENDALILENSLIKQLKPKYNILLRDDKTYPYIYVNYDEEFPRLEITRKVV 123

Query: 116 TIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
             +   Y+GPF+S  +    + ++     L      +     + CL +Q+K+C GPC G 
Sbjct: 124 KGKNIKYYGPFSSGAS--AILKTIYEEIPLIQSKSCI--KGKKVCLYYQLKKCLGPCEGL 179

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           IS ++Y+++V++A K L      + + + + M +      +E A   RDR+ A+   + +
Sbjct: 180 ISRDEYLKYVNKAIKLLHNK-EKILDILNKKMQKFAENLQFEEAAEIRDRIKAIESAEIY 238

Query: 235 NDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291
           ++        +D F +      A +   F   G+   +    +         +I +  + 
Sbjct: 239 SNVDLAKLEDLDVFVVEVFDKKAIVIRIFVREGKVVASSNNIINFQVLPDKGEIYTRAIL 298

Query: 292 QFYTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
           +FY  +       IL+ ++ EE   L  +  +++   +KI  P   E++K+I+ A INA 
Sbjct: 299 EFYNSETPFTSSKILVGDDFEEREWLSTTLSEKFKKNIKIITPTSKERKKLIDLAKINAL 358

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                          IL +    F L +IP +IE++D SH+ G + VG M+V     F K
Sbjct: 359 EVM-----KNQKENTILLEIKNLFNLENIPYKIEVFDTSHMQGRATVGAMIVWENGKFKK 413

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           + YR ++L       +D+ + M+ +L RR     K+                S PD+ ++
Sbjct: 414 SDYRHYHLE-----GKDEYSQMKELLTRRAKSFEKD----------------SPPDLWLI 452

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISI---------AKGPKRSAGMEKFFVKKG----E 516
           DGG  Q + A+ ++        I  IS          AKG  +     ++ +K G    E
Sbjct: 453 DGGVAQFNLAKEIISSSGANVDILAISKEKIDLKAHRAKGKAKDKIYYQWRMKNGEWKIE 512

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSF 575
            + L+  D  L F+Q LRDEAHRFAI  HRK + K+     L +I GIG  +   LL  F
Sbjct: 513 EIKLSENDKRLQFLQMLRDEAHRFAIEFHRKTKLKEDKKIELLKIKGIGKAKMTKLLNYF 572

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           G+ + I ++  + L  +  +++K A  I   F + +
Sbjct: 573 GSFENIKKAKFDELKEV--LNEKDAQNIVVFFKEKS 606


>gi|291280224|ref|YP_003497059.1| excinuclease ABC subunit C [Deferribacter desulfuricans SSM1]
 gi|290754926|dbj|BAI81303.1| excinuclease ABC, C subunit [Deferribacter desulfuricans SSM1]
          Length = 608

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 183/615 (29%), Positives = 287/615 (46%), Gaps = 38/615 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY  LD     LY+GKA NL+ R+KSY   NN   +   M+ +  +I++ +T 
Sbjct: 14  TIPEKPGVYIFLDKNSTPLYIGKAKNLRNRVKSYFT-NNLNLKTEIMVQKAFDIKYIITK 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            EVEALLLEAN+IK+ KP++NILL+D KS+PY+ IT  H+ P +   R  S+   +Y GP
Sbjct: 73  NEVEALLLEANLIKKEKPKYNILLKDSKSYPYLEIT-AHEYPKIKISRKISSD-STYLGP 130

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  + + +  L + F +R+C++  F+ + + C+ +QIKRC+ PC G IS E+YM  V
Sbjct: 131 FVNVSDLREILRELLKLFPIRTCSEQTFK-KGKSCINYQIKRCTAPCEGLISKEEYMSLV 189

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS----HIQNHNDSIYN 240
                   G   NL E     M   + K ++E A  +RD++  L     +      +  N
Sbjct: 190 DNIISVFKGKTKNLLEYFEEKMILHSKKLEFEKAAEYRDKINGLKKLSLNQHIVYKTDAN 249

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
               +     +  + +   F   G+  G       +     +               P  
Sbjct: 250 IDILYFKTIYEQYSGLLIIFIRNGKIIGVDREIFNSQIYQDDIPGFIIQFYTKNKILPEK 309

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
            +I+++       LLE +  +           K    + I++ A  N       +LS +I
Sbjct: 310 ISIIINNNYFTDRLLEDTLKEFKKNIKLTKSIK----KDILDFADKNLQIFFETELSKKI 365

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
             + + +   KK  LP+    IE  D SH+ G + VG  +      F KN+YR++ +   
Sbjct: 366 KSKDLFEHLAKKCHLPNDINTIECIDISHLYGKNTVGVSIFFENGSFNKNRYRRYKIKSA 425

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           +    DD   +  +  R+   ++KN+E                 D+ I+DGGKGQL +A 
Sbjct: 426 N---NDDFLAIHEIFRRKALNIMKNKEEQA--------------DLYIIDGGKGQLQSAI 468

Query: 481 GVLKKLNVENRITIISIAKGPKRS------AGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
              K+ N++     ISIAKG  +       +  E +   +   +     DP+L  IQ+LR
Sbjct: 469 RAFKEQNIQANF--ISIAKGRSKDEPNNNLSKEEVYIPGRKNPINFKKDDPVLLLIQKLR 526

Query: 535 DEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAI   RK   K    SPL +I G+G    + +L+ F  +   S  + E L+   
Sbjct: 527 DEAHRFAIEYQRKLALKDLTSSPLLQIKGVGEKTIKKVLKEFPDIYTNSNITSEELSKKC 586

Query: 594 GISKKIACKIYNHFH 608
            ISKK+A  I N   
Sbjct: 587 KISKKVAEDIVNFLR 601


>gi|330901192|gb|EGH32611.1| excinuclease ABC subunit C [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 524

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 175/520 (33%), Positives = 273/520 (52%), Gaps = 24/520 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E EALLLE 
Sbjct: 1   MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
            +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  A+ ++
Sbjct: 61  TLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSAGAIRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  +  FL G 
Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252
           ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  + + N  
Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239

Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLSEEA 309
            AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  ++++   
Sbjct: 240 GACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEVIVNVIN 299

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369
           ++      +  +  G ++ I+   +G + +  + A+ NA ++ T +L+         +  
Sbjct: 300 DDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVASRFEAL 359

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429
            K   L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V   DD A
Sbjct: 360 AKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VTAGDDYA 417

Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
            M   L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL +L V 
Sbjct: 418 AMHQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVLNELQVP 463

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILY 528
           + I ++ +AKG  R AG E  ++        L    P L 
Sbjct: 464 DLI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALQ 502


>gi|255004102|ref|ZP_05278903.1| excinuclease ABC subunit C [Anaplasma marginale str. Virginia]
          Length = 584

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 203/563 (36%), Positives = 316/563 (56%), Gaps = 32/563 (5%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY+ML   G VLYVGKA +L+KR++SY + N  + RI  M+  I  +   VT +E EAL
Sbjct: 32  GVYKMLGANGLVLYVGKAKDLKKRLRSYYNFNQMSDRILAMVGHITELDVIVTQSEAEAL 91

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVD 129
           LLEA +IK LKP++NI++RDDK +PYIL++ KH+ P + K+R       G  +GPF S  
Sbjct: 92  LLEAQLIKTLKPKYNIIMRDDKFYPYILLS-KHEYPRIVKYRGRKEAGLGKCYGPFISSL 150

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
            V+  I++L++ F LRSC+D+ F  R RPC+ ++++ CS PCT +IS E Y + VH A K
Sbjct: 151 VVKLVISALRKAFQLRSCSDNFFASRDRPCIEYEMRNCSAPCTRKISEEDYAKSVHMAHK 210

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMDCFS 246
            L+G +  L+ ++  +M + +   DYESA+++RDRL    ++    +    +    D  S
Sbjct: 211 VLTGKSKELQRELFDSMRKFSDNLDYESAMVYRDRLQALKSIQECVSFQTEMSCDADFVS 270

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           +Y      C+Q   F  G + G+  +F+   +  + + +L  F+ Q Y+D   P  + + 
Sbjct: 271 IYGRSGTYCLQVISFRGGISYGSQPYFVDDGNYESESDVLGMFMLQVYSD--PPGRVYVD 328

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            E++   ++  +  +    KV I   K  E+ K +  A  +A  +  ++L  +      L
Sbjct: 329 CESDYCEVINAALERLLTRKVDILTAKSHEELKFLRLARNSAMEALNRRLRDKA-LPAEL 387

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++  + F LP+ P+RIE+YDNSHI G    G MVV G++G ++ +YRKF +    V   D
Sbjct: 388 EELAELFGLPNPPERIEVYDNSHISGTHPFGVMVVCGKDGLLRKEYRKFKIQT--VLNGD 445

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D +MM  VL RRFS                    PS PD V++DGG+G +S+A  VL  L
Sbjct: 446 DYSMMHEVLFRRFS-----------------EESPSVPDFVLIDGGRGHISSAIQVLGDL 488

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
                I    +AKG  R+AG E F++  G  + L+    ++ +++++RDEAHRFAIT+HR
Sbjct: 489 G----IPFACMAKGSNRNAGEEVFYLPDGRKICLDPDSKLMLYMRKIRDEAHRFAITSHR 544

Query: 547 KRRKKAAYS-PLDEINGIGPLRK 568
             R +   S  L +I G G  R+
Sbjct: 545 SSRDRTLSSAVLCDIPGGGSARQ 567


>gi|237803221|ref|YP_002888415.1| excinuclease ABC subunit C [Chlamydia trachomatis B/Jali20/OT]
 gi|237805142|ref|YP_002889296.1| excinuclease ABC subunit C [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273442|emb|CAX10357.1| excinuclease ABC subunit C [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274455|emb|CAX11250.1| excinuclease ABC subunit C [Chlamydia trachomatis B/Jali20/OT]
          Length = 579

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/603 (29%), Positives = 284/603 (47%), Gaps = 42/603 (6%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR-ITHMISQINNIRFTVTCTEVEALLLE 73
           M D  G VLYVGKA NL+ R+ SY+     + + I  ++ +  +I   V   E EA+LLE
Sbjct: 1   MKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRKRIPFLMKKTTDIDTIVVSNETEAILLE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD----SSTIQGSYFGPFASVD 129
            N+IK+ +PR+N+LL+DDK+F  + ++ +H  P +   R         +   FGP+ S +
Sbjct: 61  NNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKKKQWLFGPYVSAE 120

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
           A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S  +Y E + +A  
Sbjct: 121 ACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQTEYQETLDKAVL 180

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFS 246
           FL G   +    + + + +A+ ++ +E A      L  +                +D   
Sbjct: 181 FLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHVEKFQAYDIDVLG 240

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           LY   +LA +     + G+  G   F    +++  +A   S+ L+ +  +   P+ I + 
Sbjct: 241 LYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYAENPRIPKEIFVP 300

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
              +   L    +        KI  PK    ++++  A  NA            S     
Sbjct: 301 VSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKPF----NSITPPY 353

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++    F L   P RIE YDN+H+ G   VG  +V     F   QYR F++        D
Sbjct: 354 EELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENGLFSPKQYRTFSI----TSHGD 409

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A    VL RRF  L                     P+++++DGG+ Q   AQ +L++L
Sbjct: 410 DLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRNQFKRAQRILEEL 452

Query: 487 NVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
           N+   IT+++IAK      +S   EK F +   + ++L+    IL F Q LRDEAHRFAI
Sbjct: 453 NLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFFQLLRDEAHRFAI 511

Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
             +RK+  KA  +   +I GIG ++ + LLQ F + K +  +S E L +++GI+ K   +
Sbjct: 512 QHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELKTVQGITAKDIQR 570

Query: 603 IYN 605
           I  
Sbjct: 571 IQE 573


>gi|110669544|ref|YP_659355.1| excinuclease ABC subunit C [Haloquadratum walsbyi DSM 16790]
 gi|119367657|sp|Q18E52|UVRC_HALWD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|109627291|emb|CAJ53781.1| excinuclease ABC chain C [Haloquadratum walsbyi DSM 16790]
          Length = 585

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/618 (28%), Positives = 291/618 (47%), Gaps = 59/618 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PGVYQ L     V YVGKA  L+ R++SY  ++  + RI  M+++ ++I   +T 
Sbjct: 12  ELPAEPGVYQFL-EDNTVRYVGKALELRDRVRSY--ADPRSERIRQMVARADDIDIALTE 68

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLEAN+IKR +PR+N+ L+DDKS+P +  T+ H +P +   RD  +   + FGP
Sbjct: 69  TETQALLLEANLIKRHQPRYNVRLKDDKSYPLVQFTN-HSVPRIEVTRDPDSD-ATVFGP 126

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V  +E  + +L+  + LR C+D  + +R RPCL +++  CS PCTGEI +  Y   V
Sbjct: 127 YTEVKRLETAVKALREVYGLRGCSDHKYNNRNRPCLEYEVGLCSAPCTGEIDATAYRSAV 186

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR--------------LAALSH 230
             A +F  G    L + + + M  A   E++E A   RDR              +++  +
Sbjct: 187 ESAVQFFEGKTGILADPLRQEMQAAATAEEFERAANIRDRLAVIESFHGGGEAAVSSEDN 246

Query: 231 IQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST-NAQILSYF 289
                 +    +D   +      A +       GQ        L   +     + +L+ F
Sbjct: 247 SHTAETTSERAVDVLGVAIEGTTATVARLHSDNGQLVDRSQHRLNAPTGEDRASAVLTAF 306

Query: 290 LRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
           L Q+Y ++  P+ IL SE   +  + E    +     V I VP  G + K+I+ AL NA 
Sbjct: 307 LTQYYAERSLPDAILCSEHPHDNDVREWLSVEG----VNIRVPGTGRESKLIDLALKNAR 362

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                      +    L D      +     RIE +D SH  G + VG  V   +     
Sbjct: 363 NGSVH-----DNESAALADALGFSIIN----RIEGFDVSHSQGRAVVGSNVCFIDGSAAT 413

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           + YR+  L        DD A M+ +L  R  +     +                PD++++
Sbjct: 414 DAYRRKRLTDT----NDDYARMQELLTWRAKRACDGRDERPD------------PDLIVI 457

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQL AA+  ++    +  ++ I++AK  +         V        +   P L+ 
Sbjct: 458 DGGKGQLRAAREAVETTGWD--VSTIALAKADE-------LVVTPNGVHDWDADAPQLHL 508

Query: 530 IQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           +QR+RDEAHRFA+  H+  R    ++ L ++ G+G   ++ LL+ FG+V+ +  +S + L
Sbjct: 509 LQRVRDEAHRFAVQYHQSIRD-DIHTVLSDVPGVGEQTQQALLRRFGSVENVRSASRDAL 567

Query: 590 ASIEGISKKIACKIYNHF 607
             + G+ K+ A  I N  
Sbjct: 568 CDVPGVGKQTADTIANRL 585


>gi|110004469|emb|CAK98806.1| putative uvrc protein excinuclease abc subunit c [Spiroplasma
           citri]
          Length = 593

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/614 (27%), Positives = 286/614 (46%), Gaps = 43/614 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   +   +VLYVGKA NL+ R+ SY +   + ++ T ++ +I  +   
Sbjct: 10  QVEILPAKPGCYLFYNNYHQVLYVGKAKNLRSRVSSYFNK-VYNYKTTRLVQEIVRLETI 68

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T TE EAL+LE N+IK+ KP++NILL DDK +PYI+IT K K P     R+       Y
Sbjct: 69  ITKTEKEALILEHNLIKQYKPKYNILLNDDKHYPYIVIT-KEKDPQYLYVRNIHQKYARY 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPF       + I  L+R + LR C  ++     +PCL + I +CSG C   +S + Y+
Sbjct: 128 YGPFPEGSHAREIIKVLERLYPLRRCKGNL----GKPCLYYHINQCSGACVKTVSPDYYI 183

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---- 237
           + + +   F  G     K+ + + M QA     +E A   +  +  L    +        
Sbjct: 184 KMIKKVHSFFKGNFTETKKLLEKRMLQAADNLQFEEAHKLKLLIRNLDWTLSSQTVEMLN 243

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
             + +D  SLY       + T F+  G+       +   D      ++   +L+  Y   
Sbjct: 244 QNDDLDVISLYQTAEHLVLTTLFYRAGKLSYKDYEYYHLDFAEDCQELYRLYLQNIYQKN 303

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL- 356
             P  I+++E      L          +  ++  PK   ++ I++ A  N++ S+ Q   
Sbjct: 304 ILPTKIIVNEIIALPEL-------NLLFDNRVFHPKTPIEKTIMKLATENSYESYVQYQT 356

Query: 357 --STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
               E+++  +LK+      L  +P  IE+ D ++I      G ++V       +N YRK
Sbjct: 357 TAQRELNNAEVLKELQMLLDLSELPYLIEMIDIANINDEFVTGGVIVYKNGRLSRNDYRK 416

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +NL    +  QDD   +  V+ RR+ ++I+ E+ L              P+++I+DGG  
Sbjct: 417 YNLE---IPDQDDTHRIAAVVTRRYQKVIQEEQAL--------------PNLIIMDGGIQ 459

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++A    L KL++   I +I + K  +     +     K E + L+    +  F+ R++
Sbjct: 460 QVNACLKELAKLDLA--IPVIGLVKNNQHKT--DHLLNLKKEKIYLDKSSRLFLFLTRIQ 515

Query: 535 DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D+ H FAIT+ R+R+ KA   S L+ I G G  R +LL   F ++  I ++S   L  + 
Sbjct: 516 DDVHHFAITSFRRRQTKALTTSILETIPGFGKQRIKLLNHHFESIGAIKKASDAELYQVL 575

Query: 594 GISKKIACKIYNHF 607
             SKK+   +    
Sbjct: 576 H-SKKLIENLRKFL 588


>gi|269123283|ref|YP_003305860.1| excinuclease ABC, C subunit [Streptobacillus moniliformis DSM
           12112]
 gi|268314609|gb|ACZ00983.1| excinuclease ABC, C subunit [Streptobacillus moniliformis DSM
           12112]
          Length = 588

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 183/615 (29%), Positives = 282/615 (45%), Gaps = 41/615 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PGVY M DI  +V+YVGKA NL+ R+ SY ++   + +   +I  I +I F 
Sbjct: 3   DIKNIPTNPGVYMMKDINDKVIYVGKAKNLKNRVSSYFNNPKSSMKTFELIKHIKDIEFF 62

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST----I 117
           +  +E+EAL+LE N+IK+  P++NILL+D+K++PY+ IT   KIP +   R         
Sbjct: 63  LCNSELEALILENNLIKKYLPKYNILLKDNKTYPYLKITT-EKIPQISVVRSRKHLEEST 121

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEIS 176
           +  YFGP+     +++ I  L   F ++     ++  +     L +              
Sbjct: 122 EAYYFGPYP--FNMKEMIKLLLSAFDMQYFNIDMYNKKIIGNNLRYNNLNKELYFENVED 179

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
             KY+E       FL   + ++ +K+   M + +   DYE A+I R+R+  L+ +     
Sbjct: 180 ENKYIENSKAMINFLKNKDVSIIDKLHNQMIEYSENLDYEKALIMRNRIEKLNALIKTQL 239

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
             +++    D F L +  N   +       G+  G     +    E     I       +
Sbjct: 240 IEHSQQVDEDVFVLTNIGNNIFMCILNIRDGKIIGKNNIRIDNKYEE--QDIFEDLFLSY 297

Query: 294 YTDKPCPENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKR-KIIEQALINAHRS 351
           Y +K  P+NI++  + +    +LE  F  +    VKI  P    +R  ++E    N +  
Sbjct: 298 YDNKKIPKNIIIENKYKSNIDILEKYFSTEKNKLVKIHAPIIKSRRLSLLELGKKNLNYY 357

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             + + TE +    L D      L  +PK IE +D S+I G  AV  M V         +
Sbjct: 358 LDEYMRTEKAISKGLIDLKNVLNLKKLPKIIECFDISNIQGKDAVSAMSVTVNGKADNKR 417

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR F +   D    DD  MMR  L RR+S+L  +E                 PDV+++DG
Sbjct: 418 YRHFKITVKDTP--DDFMMMRETLMRRYSKLEIDE----------------LPDVILIDG 459

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQL  A  VLK+L     + IISIAK  +     E     +      +  D  L  + 
Sbjct: 460 GKGQLGVAVDVLKELGKFEFLDIISIAKKEELIFKAE-----ESVPYRFDKNDEALKILI 514

Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R RDE HRF IT HRK R K    S LDEI GIGP RK+ L+  FG++K I  +S + L 
Sbjct: 515 RTRDEVHRFGITYHRKLRSKRNIKSVLDEIRGIGPKRKKELILKFGSIKNILEASEKELL 574

Query: 591 SIEGISKKIACKIYN 605
            I  +   +  +I  
Sbjct: 575 EI--LPLNVVKEIKK 587


>gi|319956177|ref|YP_004167440.1| excinuclease ABC subunit c [Nitratifractor salsuginis DSM 16511]
 gi|319418581|gb|ADV45691.1| Excinuclease ABC subunit C [Nitratifractor salsuginis DSM 16511]
          Length = 600

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 182/623 (29%), Positives = 298/623 (47%), Gaps = 52/623 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY--MHSN-----NHTHRITHMISQINN 57
            +P+ PGVYQ  D  GR+LYVGKA NL+ R++SY           + + RI  M+ +  +
Sbjct: 9   SLPKNPGVYQYFDAQGRLLYVGKAKNLRNRVRSYWRFTPTLRPNPDQSPRILKMLHEAAS 68

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST- 116
           + + V  +E +AL+LE ++IK+LKP++NILLRDDK++PYI + +    P     R     
Sbjct: 69  LDYLVVESEADALILENSLIKQLKPKYNILLRDDKTYPYIYLDESQDFPRFELTRKVVRG 128

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
            +  Y+GPF S       +++L   F L   A        + CL  QI RC  PC G+I+
Sbjct: 129 KKIRYYGPFPSGG--RALLDALYALFPLVQKAG--CLRGKKACLFHQIGRCPAPCEGKIT 184

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            + Y + V  AK+ +      + +++   M Q   +E +E A   RD++ A+  ++  ++
Sbjct: 185 PDAYRQGVEAAKEAIHNL-PLILKRLEERMMQLAEQERFEEAAKVRDQIEAIRGLEIRSE 243

Query: 237 SIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
                    D F++   K+   +   F   G+   +   F +        +  +  L  F
Sbjct: 244 IDLAREEDYDIFAIDPGKDRGVVVRLFMRRGRITASSHSFFRHTEAYEPEEAYAQALLDF 303

Query: 294 YTDKPCPEN--ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
           Y ++       ILL    E+   LE    ++ G K++I  P++G K ++   AL NA   
Sbjct: 304 YREEAPLTAATILLPLALEQREELEKVLSRRLGRKIRILHPQRGPKAQLTRLALTNAAEL 363

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             ++ S  ++         + F L   P R+E++DNSH+MG + VG MV   E  + KN 
Sbjct: 364 LRRETSPTVTPIE--NRIAELFGLERTPWRVEVFDNSHLMGEAPVGAMVAWDEGKWAKNS 421

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++ L       +D+   M  +L+RR     K                   PD+ +LDG
Sbjct: 422 YRRYRLE-----ARDEYHQMMEMLQRRIGDFDKE----------------PPPDLWLLDG 460

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEK-FFVKKGEALVLNMRDP 525
           G+     A+ +L++  V   + +++IAK        R+ G  +         L L+ +DP
Sbjct: 461 GETLRRLAEDLLRQAGV--NLPVLAIAKEKLDAKAHRAKGAARDLLHGPAGTLHLDPKDP 518

Query: 526 ILYFIQRLRDEAHRFAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L ++QRLRDEAHR+AIT HR K+R++     L +  GIGP   + LL  FGT K I ++
Sbjct: 519 RLQWLQRLRDEAHRYAITYHRNKKRREDRQVALLQTKGIGPATLKKLLDCFGTFKAIEKA 578

Query: 585 SPETLASIEGISKKIACKIYNHF 607
              TL  + G    +A ++    
Sbjct: 579 DFNTLQKVVG--PTMAKRLIESL 599


>gi|332298590|ref|YP_004440512.1| UvrABC system protein C [Treponema brennaborense DSM 12168]
 gi|332181693|gb|AEE17381.1| UvrABC system protein C [Treponema brennaborense DSM 12168]
          Length = 675

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 171/589 (29%), Positives = 267/589 (45%), Gaps = 38/589 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           + P   GVY      G V+YVGKA NL+ R+ SY        +   ++S+ ++I +  T 
Sbjct: 17  KAPSTSGVYFWKGEDGTVIYVGKAKNLKNRLSSYFSG-QKDIKTQILVSRAHSIEYITTA 75

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EA +LE NMIK+ KPR+NI L+D KS+P + +T+    P LYK R        YFGP
Sbjct: 76  NEYEAFILENNMIKQHKPRYNINLKDGKSYPVLRVTN-EAFPRLYKTRRIMQDGSKYFGP 134

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F  V A++  I +L R + LR C     R R+ PC+ + I RC  PC G+IS+E Y E++
Sbjct: 135 FPDVGALDAFIETLLRLYPLRRCKK--LRTRSAPCMYYHIGRCGAPCCGKISTETYNEYI 192

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNR 241
            E ++ L G      +K+   M QA     +E A   RD +AAL  ++  N         
Sbjct: 193 GEIEQILEGKGKETADKLKERMKQAAQDLQFEKAARLRDSIAALDILKPQNIVQDFNPED 252

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  + +    L          G+  G   +   + +E+   ++L  FL  +YTD     
Sbjct: 253 RDYIAYFCEGELVSFTVLKMRQGKLLGRDNYRTVSLNEAD--ELLGEFLAAYYTDADAIP 310

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII-----EQALINAHRSHTQKL 356
             +     E   L +  F   +G   +I     G             A  NA      + 
Sbjct: 311 PKIFVPTREGLELTKEWFAAAFGAHPEIDTVADGTDNARRHEAALNMAFQNARE-DIARR 369

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             E      +++      LPH+P RIE +D +HI G   V  ++        K  YR F 
Sbjct: 370 VRERGDIPAMEELRDLLGLPHLPVRIEGFDIAHIDGKFPVASLISFYNGNPDKKNYRYFR 429

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           L   D    DD A MR    RR+++L+  +                 PD++++DGG GQ+
Sbjct: 430 LKTTDGV-IDDFASMREAASRRYTRLLNEQ--------------AEMPDLILIDGGIGQV 474

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           +A +GVLK L+++  I +  +AK  +     E +       + L  R   L  +QR+RDE
Sbjct: 475 NAVEGVLKALSLD--IPVAGLAKRDE-----EIYRPGNSTPICLPKRSDALRLLQRVRDE 527

Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            HRFA + +++ R K    S    +  +  +R R L+Q+F + + +  +
Sbjct: 528 THRFATSRNQRLRTKENTVSAFAALPHVAEVRARTLMQTFTSPEKMIGA 576


>gi|152991086|ref|YP_001356808.1| excinuclease ABC subunit C [Nitratiruptor sp. SB155-2]
 gi|151422947|dbj|BAF70451.1| excinuclease ABC, C subunit [Nitratiruptor sp. SB155-2]
          Length = 608

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 199/632 (31%), Positives = 311/632 (49%), Gaps = 56/632 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P+ PGVYQ  D  GR+LYVGKA +L+KR+KSY         + N + RI  MI +
Sbjct: 7   KLQALPDAPGVYQYFDQNGRLLYVGKAKSLKKRVKSYFRFSPALTPAPNLSPRIFKMIHE 66

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
             N+ + V  +E +AL+LE ++IK+LKP++NILLRDDK++PY+ +      P +   R  
Sbjct: 67  TKNLEYIVVESENDALILENSLIKQLKPKYNILLRDDKTYPYLYVDFNETFPRIKLTRKV 126

Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S  A ++ ++SL   F L            + CL +Q+KRC  PC G
Sbjct: 127 IRGSNIRYFGPFPS--AAKEIMDSLYELFPLVQ--KESCIKGKKACLFYQMKRCLAPCEG 182

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +++ ++Y + + EA   L      + EK+   M +   +  +E A   RDR+  +  +Q 
Sbjct: 183 KVTPKEYAQILDEAIFHLKDKQKLI-EKLQNKMQEYAEQLRFEEAASLRDRIKKIESVQI 241

Query: 234 HNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSY 288
            +   + +M   D F++  ++  A +   F   G+   + +     D E     ++    
Sbjct: 242 QSGIDFAKMENLDIFAVEEDEKQAVLVRLFMREGKVISSSSTLYHIDKEKGFDRSEAYKR 301

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            L +FY ++       I+++ +  +   ++    K++G K+ +  P +GEKRKI   AL+
Sbjct: 302 ALLEFYQNQTPLTASRIIVAHDFSDRDSVQNYLSKKFGKKITVQHPLRGEKRKIANLALL 361

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA       L    +   I       F L H P RIE +DNSHI G + VG MVV     
Sbjct: 362 NAKE----LLKKRKNQNRIEDIIKSYFHLQHSPYRIEAFDNSHISGSNPVGAMVVYENGK 417

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           FVK+ YR + LH      +D+ A M+ +L RR     KN                  PD+
Sbjct: 418 FVKSDYRHYTLH-----HKDEYAQMKELLTRRCESFAKN----------------PPPDL 456

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEKFFVKKGEAL-VL 520
            I+DGG+     A  +L+   V   I +I+IAK        R+ G  K  +     +  L
Sbjct: 457 WIIDGGETLRQLAVDILQSHGVG--IDVIAIAKEKHDAKAHRAKGKAKDILYSAMGVHKL 514

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579
           +  D  L F Q++RDEAHRFA+  HR++R+K +    L +I+GIG    + LL  +GT +
Sbjct: 515 SPVDEKLLFFQKIRDEAHRFALQFHRQKRQKESKLVELLQIDGIGEATLKKLLHFYGTFE 574

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I +S  E L  + G  +K A KI  HF K+ 
Sbjct: 575 RIKKSDFEELKQLVG--EKTAQKILEHFSKHD 604


>gi|189502240|ref|YP_001957957.1| hypothetical protein Aasi_0859 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497681|gb|ACE06228.1| hypothetical protein Aasi_0859 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 598

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 164/619 (26%), Positives = 287/619 (46%), Gaps = 50/619 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN---NHTHRITHMISQINNIRFTV 62
           +P+ PG+Y   +    ++YVGK+ NL+KR+ SY   +     T +   M++ I  I FT+
Sbjct: 14  LPDQPGIYLFYNKKDEIIYVGKSINLRKRVSSYFSKSQIKKATPKTQRMVADIQAISFTI 73

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E +AL+LE N+IK ++P +NILL+  K + YI IT+  + P +   R  +T  G Y+
Sbjct: 74  VDSEYDALVLENNLIKSIRPEYNILLKYGKGYSYICITN-DRFPKVITTRQVNTKLGRYY 132

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCAD-----SVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           GPF ++  + + ++ +QR +  R+C       ++ +H+ R CLL+ I++C GPC G  + 
Sbjct: 133 GPFNNLYYMYQMMDLIQRVYGPRTCNYNLSKQNIKKHKFRVCLLYHIRKCKGPCQGLQTE 192

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           + Y   + +    L G  + +K+     M QA L+  Y+ A  ++ +LA+L   Q  +  
Sbjct: 193 DAYKLDIAQIDHLLRGNLNKVKKDFKERMQQAALRLAYKEAHDYKMKLASLEAYQAKSLV 252

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                  +D F +  ++ +A I       G      T  +K      +  IL   +  F 
Sbjct: 253 ANPNLGNLDVFGIVSDEEVAFISYLQVKNGATNFAQTIQVKKKLGEADTDILPLIILNFR 312

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HR 350
                     L        L           K+ +T PK G+K+K+++ A+ NA      
Sbjct: 313 EMYNGTAPEALVNVVPLIKLD----------KLTLTSPKIGDKKKLVDLAIKNALFLKKE 362

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +K   +      L+   +   L  +   IE ++N+ I   +    +VV       K 
Sbjct: 363 YLLKKEENQNRPYKTLQLLQQDLQLKSLLLHIEYFNNASIQENNTAAALVVFKNGKPAKR 422

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +Y+ FN+    V    D   +  ++ RR+ +LI+ +               + PD++I+D
Sbjct: 423 EYQNFNIRT--VVEPIDLTSVHEIVSRRYKRLIEEK--------------STLPDLIIID 466

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           G   QL+ A   L+++ +  ++ IISIAK  +     E ++        L+ + P L  +
Sbjct: 467 GETTQLNVAVQALQEIGIYGQVPIISIAKRLE-----EIYYPGDTYPTCLSKQSPSLKLL 521

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           Q++R+EAHRFAI  H  +    +  S L  I GIG      L+Q F +V  I  +S ETL
Sbjct: 522 QQVRNEAHRFAIGIHHSQFSNISLISQLQNIPGIGNKTVDKLVQQFQSVDNIKAASLETL 581

Query: 590 ASIEGISKKIACKIYNHFH 608
           A   G S+  A ++  +  
Sbjct: 582 AEYVGTSR--ATQLKAYLQ 598


>gi|329767011|ref|ZP_08258539.1| excinuclease ABC [Gemella haemolysans M341]
 gi|328837736|gb|EGF87361.1| excinuclease ABC [Gemella haemolysans M341]
          Length = 582

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 171/614 (27%), Positives = 275/614 (44%), Gaps = 47/614 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R+KSY     H  +   ++S+I ++ + 
Sbjct: 8   KLELLPDNPGCYLYKDNIGEIIYVGKAKNLKNRVKSYFTGT-HNKKTQTLVSKIEDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGS 120
           +  +E EALLLE N+IK+ +P FNI L+DDKS+PY+++T K + P L   R      +  
Sbjct: 67  IVNSEKEALLLENNLIKKYRPYFNIRLKDDKSYPYLMVT-KEEHPRLLMTRKYKKSNKNI 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+  + +  +    L + + LR C         RPC+ +QI  C GPC  +I+ ++Y
Sbjct: 126 YFGPYVDIKSAMEVKKILDKIYPLRKCNPVE----KRPCMYYQIGECIGPCAKKITPDEY 181

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DS 237
              +++ K FL+G    + E +   M       ++E+A      + ++     +    DS
Sbjct: 182 KTQINKIKSFLTGNTKEILEDLNNKMQDHVKNLEFEAAGQIHSYIKSIEVSVQNQVVADS 241

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D      N +  CIQ      G        +   +   +  QIL  +L Q+Y   
Sbjct: 242 NNIDRDYIGYSFNNDYICIQIFLSRLGNIIERKVEYF--NLYDSPDQILYSYLIQYYAMN 299

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I +                      K+ +PK+G  RKI++    NA       L+
Sbjct: 300 KLPKEIYID--------EVDDNLLSNVVDCKVIIPKRGNHRKILDTVKENASHYLNNNLA 351

Query: 358 TEISHQMILK---DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            E   +  L+   +   +         I+ +DNS+IMG  AV   V           YRK
Sbjct: 352 IEELKERKLQVTLNNIAEKLGVKSIDSIDAFDNSNIMGVDAVSVKVNFTNGKKNTYNYRK 411

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F    ++    +D   M+ VL R +     N E                  ++I+DGGK 
Sbjct: 412 F--KIDESMGINDVQTMKEVLYRNYKDKKTNTE------------------LLIVDGGKN 451

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
            L+AA  ++ +     ++ II +AK  K     E       E +          F+++++
Sbjct: 452 HLNAAIEIVHEKLGLTKVKIIGLAKNDKHIT--EYIITDDYEIIEFPKTSAEYLFLKQIQ 509

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR  + K    S LD I GIG +RK LLL++F +++ I  +S E L  + 
Sbjct: 510 DEVHRFAITYHRAIKTKNMYNSSLDNIQGIGKVRKNLLLKTFSSIEEIKEASEERLLKL- 568

Query: 594 GISKKIACKIYNHF 607
           GI K +   + N+ 
Sbjct: 569 GIPKDVINNLKNNL 582


>gi|289525835|emb|CBJ15316.1| excinuclease ABC subunit C [Chlamydia trachomatis Sweden2]
          Length = 579

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/603 (29%), Positives = 284/603 (47%), Gaps = 42/603 (6%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCTEVEALLLE 73
           M D  G VLYVGKA NL+ R+ SY+     +  RI  ++ +  +I   V   E EA+LLE
Sbjct: 1   MKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRERIPFLMKKTTDIDTIVVSNETEAILLE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD----SSTIQGSYFGPFASVD 129
            N+IK+ +PR+N+LL+DDK+F  + ++ +H  P +   R         +   FGP+ S +
Sbjct: 61  NNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKKKQWLFGPYVSAE 120

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
           A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S  +Y E + +A  
Sbjct: 121 ACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQTEYQETLDKAVL 180

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFS 246
           FL G   +    + + + +A+ ++ +E A      L  +                +D   
Sbjct: 181 FLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHVEKFQAYDIDVLG 240

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           LY   +LA +     + G+  G   F    +++  +A   S+ L+ +  +   P+ I + 
Sbjct: 241 LYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYAENPRIPKEIFVP 300

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
              +   L    +        KI  PK    ++++  A  NA            S     
Sbjct: 301 VSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKPF----NSITPPY 353

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++    F L   P RIE YDN+H+ G   VG  +V     F   QYR F++        D
Sbjct: 354 EELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENALFSPKQYRTFSI----TSHGD 409

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A    VL RRF  L                     P+++++DGG+ Q   AQ +L++L
Sbjct: 410 DLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRNQFKRAQRILEEL 452

Query: 487 NVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
           N+   IT+++IAK      +S   EK F +   + ++L+    IL F Q LRDEAHRFAI
Sbjct: 453 NLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFFQLLRDEAHRFAI 511

Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
             +RK+  KA  +   +I GIG ++ + LLQ F + K +  +S E L +++GI+ K   +
Sbjct: 512 QHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELKTVQGITAKDIQR 570

Query: 603 IYN 605
           I  
Sbjct: 571 IQE 573


>gi|82617200|emb|CAI64107.1| excinuclease ABC, subunit C [uncultured archaeon]
 gi|268323040|emb|CBH36628.1| excinuclease ABC, subunit C [uncultured archaeon]
          Length = 520

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/554 (31%), Positives = 273/554 (49%), Gaps = 46/554 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            +  +P+ PG Y   D + R++YVGKA NL+KR+KSY   N    +   M+ +I+++ F 
Sbjct: 5   KNRNIPDNPGCYLFRDSSNRIIYVGKAKNLRKRVKSYFQKNELDPKTEAMVQKIDSVDFI 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT  EVEAL+LE N+IK+  PR+NI L+D K + YI +T     P L   R      G +
Sbjct: 65  VTDNEVEALILENNLIKKHSPRYNIDLKDSKRYAYIKLT-DEDFPRLLIARR-KEGGGKF 122

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S  A +  +++L+++F +R+C     R   +PCL  QI+ C  PC G IS  +Y 
Sbjct: 123 FGPFVSAAARDYLLSALRKSFQIRTCK----RMAKKPCLRHQIELCQAPCIGNISKVEYS 178

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E +   +  L G  +   +   R M  A+ K D+E A++ R+++ A+  ++         
Sbjct: 179 ERIRSVELILKGKTNEFIKSKTREMKSASDKLDFERALVLRNQIGAIEQLKEKQLMELQK 238

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +         +     + G       F        T+A  L  FL Q+Y++  
Sbjct: 239 KYDEDIINYITKDGRVYLILFNIYKGILENKQEFVF-----ETSANFLDDFLVQYYSENA 293

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  ++L +E ++  L       +    V + VPK GE+++++E  L N   S       
Sbjct: 294 VPAELILPQEIDDALLS--FLTLKRNGTVNVKVPKVGERKQLLELVLKNIELSFF----- 346

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             S    L+    +  LP IP  IE +D SH+ G S VG MV        K+ YR+F + 
Sbjct: 347 --SEVEALEALKNELNLPEIPAVIESFDISHLSGTSTVGSMVQFQNAKPAKSNYRRFKIK 404

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   +  V+ RR+++LIK E  L              PD++++DGG GQL++
Sbjct: 405 T--VDGIDDVGAIAEVVRRRYTRLIKEESEL--------------PDLIVIDGGIGQLNS 448

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L+KL +   I IISIAK  +     E +       L L+ R   L  I+++RDEAH
Sbjct: 449 ALAELRKLGLL--IPIISIAKKFE-----EVYVPGLTFPLRLDRRSKALKLIEQVRDEAH 501

Query: 539 RFAITTHRKRRKKA 552
           RFAI+ +R  RKK+
Sbjct: 502 RFAISYNRLLRKKS 515


>gi|82617332|emb|CAI64244.1| excinuclease ABC, subunit C [uncultured archaeon]
          Length = 520

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/554 (31%), Positives = 273/554 (49%), Gaps = 46/554 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            +  +P+ PG Y   D + R++YVGKA NL+KR+KSY   N    +   M+ +I+++ F 
Sbjct: 5   KNRNIPDNPGCYLFRDSSNRIIYVGKAKNLKKRVKSYFQKNELDPKTEAMVQKIDSVDFI 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT  EVEAL+LE N+IK+  PR+NI L+D K + YI +T     P L   R      G +
Sbjct: 65  VTDNEVEALILENNLIKKHSPRYNIDLKDSKRYAYIKLT-DEDFPRLLIARR-KEGGGKF 122

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S  A +  +++L+++F +R+C     R   +PCL  QI+ C  PC G IS  +Y 
Sbjct: 123 FGPFVSAAARDYLLSALRKSFQIRTCK----RMAKKPCLRHQIELCQAPCIGNISKVEYS 178

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E +   +  L G  +   +   R M  A+ K D+E A++ R+++ A+  ++         
Sbjct: 179 ERIRSVELILKGKTNEFIKSKTREMKSASDKLDFERALVLRNQIGAIEQLKEKQLMELQK 238

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D  +         +     + G       F        T+A  L  FL Q+Y++  
Sbjct: 239 KYDEDIINYITKDGRVYLILFNIYKGILENKQEFVF-----ETSANFLDDFLVQYYSENA 293

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  ++L +E ++  L       +    V + VPK GE+++++E  L N   S       
Sbjct: 294 VPAELILPQEIDDALLS--FLTLKRNGTVNVKVPKVGERKQLLELVLKNIELSFF----- 346

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             S    L+    +  LP IP  IE +D SH+ G S VG MV        K+ YR+F + 
Sbjct: 347 --SEVEALEALKNELNLPEIPAVIESFDISHLSGTSTVGSMVQFQNAKPAKSNYRRFKIK 404

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   +  V+ RR+++LIK E  L              PD++++DGG GQL++
Sbjct: 405 T--VDGIDDVGAIAEVVRRRYTRLIKEESEL--------------PDLIVIDGGIGQLNS 448

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L+KL +   I IISIAK  +     E +       L L+ R   L  I+++RDEAH
Sbjct: 449 ALAELRKLGLL--IPIISIAKKFE-----EVYVPGLTFPLRLDRRSKALKLIEQVRDEAH 501

Query: 539 RFAITTHRKRRKKA 552
           RFAI+ +R  RKK+
Sbjct: 502 RFAISYNRLLRKKS 515


>gi|241889559|ref|ZP_04776857.1| excinuclease ABC subunit C [Gemella haemolysans ATCC 10379]
 gi|241863181|gb|EER67565.1| excinuclease ABC subunit C [Gemella haemolysans ATCC 10379]
          Length = 582

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/614 (27%), Positives = 271/614 (44%), Gaps = 47/614 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R+KSY     H  +   ++S+I ++ + 
Sbjct: 8   KLELLPDNPGCYLYKDNIGEIIYVGKAKNLKNRVKSYFTGT-HNKKTQTLVSKIEDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQGS 120
           +  +E EALLLE N+IK+ +P FNI L+DDKS+PY++IT K + P L   R      +  
Sbjct: 67  IVNSEKEALLLENNLIKKYRPYFNIRLKDDKSYPYLMIT-KEEHPRLLMTRKYKKNNKNI 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+  + +  +    L + + LR C         RPC+ +QI  C GPC  +I+++ Y
Sbjct: 126 YFGPYVDIKSATEVKKILDKIYPLRKCNPVE----KRPCMYYQIGECIGPCAKKITADDY 181

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              + + K FL+G    +   +   + +     ++E+A    + + ++     +     +
Sbjct: 182 KSQISKIKSFLTGNTKEILTDLQSKLQEHIKNLEFEAAGQIHNYIKSIEVSVQNQVVADS 241

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D      N +  CIQ      G        +   +   T  +IL  +L Q+Y   
Sbjct: 242 TNVDRDYIGFTFNNDYICIQIFLSRLGNIIERKVEYF--NLYDTPEEILYSYLLQYYALN 299

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I +                      K+ +PK+G  RKI++    NA       L+
Sbjct: 300 KLPKEIYID--------EVDDNLLSDVVDCKVIIPKRGNHRKILDTVKENATYYLNNNLA 351

Query: 358 TEISHQMILK---DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            E   +  L+   +   +    +    I+ +DNS+IMG  AV   V           YRK
Sbjct: 352 IEELKERKLQVTLNNIAEKLGVNSINSIDAFDNSNIMGVDAVSVKVNFTNGKKNTYNYRK 411

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F    ++    +D   M+ VL R +     N E                  ++I+DGGK 
Sbjct: 412 F--KIDESMGINDVQTMKEVLYRNYKDRKTNTE------------------LLIVDGGKN 451

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
            L+ A  V+       +I II +AK  K     E       E +          F+++++
Sbjct: 452 HLNVAIDVVHNTLDLKQIKIIGLAKNDKHIT--EYIITDDYEIIEFPKTSAEYLFLKQIQ 509

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR  + K    S LD+I GIG +RK LLL+SF +++ I  +  E L  + 
Sbjct: 510 DEVHRFAITYHRATKNKNMYKSSLDDIQGIGKVRKNLLLKSFSSLEEIKNAPDEKLLKL- 568

Query: 594 GISKKIACKIYNHF 607
           GI K +   +    
Sbjct: 569 GIPKDVIKNLKKRL 582


>gi|166154133|ref|YP_001654251.1| excinuclease ABC subunit C [Chlamydia trachomatis 434/Bu]
 gi|166155008|ref|YP_001653263.1| excinuclease ABC subunit C [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930121|emb|CAP03604.1| excinuclease ABC subunit C [Chlamydia trachomatis 434/Bu]
 gi|165930996|emb|CAP06558.1| excinuclease ABC subunit C [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 579

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/603 (29%), Positives = 286/603 (47%), Gaps = 42/603 (6%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVTCTEVEALLLE 73
           M D  G VLYVGKA NL+ R+ SY+     +  RI  ++ +  +I   V   E EA+LLE
Sbjct: 1   MKDSQGTVLYVGKAKNLRNRLSSYLQKKGDSRERIPFLMKKTTDIDTIVVSNETEAILLE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS----TIQGSYFGPFASVD 129
            N+IK+ +PR+N+LL+DDK+F  + ++ +H  P +   R  +      +   FGP+ S +
Sbjct: 61  NNLIKKYQPRYNVLLKDDKTFFCLSVSLEHPWPRIEAIRTRALSPGKKKQWLFGPYVSAE 120

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
           A    +  +   F LR+C+D  F  R RPC+L+++KRC  PC G  S  +Y E + +A  
Sbjct: 121 ACYALLEVISLWFPLRTCSDREFSTRQRPCVLYEMKRCLAPCVGLCSQTEYQETLDKAIL 180

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDCFS 246
           FL G   +    + + + +A+ ++ +E A      L  +                +D   
Sbjct: 181 FLKGDVRSTISNLEKAIEKASQEQKFEHAAALYRTLTLIRQTMAKQHVEKFQAYDIDVLG 240

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           LY   +LA +     + G+  G   F    +++  +A   S+ L+ +  +   P+ I + 
Sbjct: 241 LYRKGSLAIVSVLSVYSGKLLGARYFIFPENAQEDSALFSSFILQYYAENPRIPKEIFVP 300

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
              +   L    +        KI  PK    ++++  A  NA            S     
Sbjct: 301 VSLDSPELP---YLLNTAEPPKIRCPKTEYGKELLALAHKNAAEQAKPF----NSITPPY 353

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++    F L   P RIE YDN+H+ G   VG  +V   + F   QYR F++        D
Sbjct: 354 EELQHFFNLSQYPYRIECYDNAHLQGEHNVGVCIVFENDLFSPKQYRTFSI----TSHGD 409

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A    VL RRF  L                     P+++++DGG+ Q   AQ +L++L
Sbjct: 410 DLAAFEEVLTRRFRSLTTE-----------------LPNLIVIDGGRNQFKRAQRILEEL 452

Query: 487 NVENRITIISIAK---GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAI 542
           N+   IT+++IAK      +S   EK F +   + ++L+    IL F Q LRDEAHRFAI
Sbjct: 453 NLTG-ITVVTIAKESGNHSKSLRQEKLFCETFPQGILLHPTSAILQFFQLLRDEAHRFAI 511

Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
             +RK+  KA  +   +I GIG ++ + LLQ F + K +  +S E L +++GI+ K   +
Sbjct: 512 QHYRKKHAKAVLTT-KKIPGIGEVKTKRLLQKFKSWKRVFIASEEELKTVQGITAKDIQR 570

Query: 603 IYN 605
           I  
Sbjct: 571 IQE 573


>gi|254994840|ref|ZP_05277030.1| excinuclease ABC subunit C [Anaplasma marginale str. Mississippi]
          Length = 563

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 201/557 (36%), Positives = 313/557 (56%), Gaps = 32/557 (5%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY+ML   G VLYVGKA +L+KR++SY + N  + RI  M+  I  +   VT +E EAL
Sbjct: 32  GVYKMLGANGLVLYVGKAKDLKKRLRSYYNFNQMSDRILAMVGHITELDVIVTQSEAEAL 91

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVD 129
           LLEA +IK LKP++NI++RDDK +PYIL++ KH+ P + K+R       G  +GPF S  
Sbjct: 92  LLEAQLIKTLKPKYNIIMRDDKFYPYILLS-KHEYPRIVKYRGRKEAGLGKCYGPFISSL 150

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKK 189
            V+  I++L++ F LRSC+D+ F  R RPC+ ++++ CS PCT +IS E Y + VH A K
Sbjct: 151 VVKLVISALRKAFQLRSCSDNFFASRDRPCIEYEMRNCSAPCTRKISEEDYAKSVHMAHK 210

Query: 190 FLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA---ALSHIQNHNDSIYNRMDCFS 246
            L+G +  L+ ++  +M + +   DYESA+++RDRL    ++    +    +    D  S
Sbjct: 211 VLTGKSKELQRELFDSMRKFSDNLDYESAMVYRDRLQALKSIQECVSFQTEMSCDADFVS 270

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           +Y      C+Q   F  G + G+  +F+   +  + + +L  F+ Q Y+D   P  + + 
Sbjct: 271 IYGRSGTYCLQVISFRGGISYGSQPYFVDDGNYESESDVLGMFMLQVYSD--PPGRVYVD 328

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            E++   ++  +  +    KV I   K  E+ K +  A  +A  +  ++L  +      L
Sbjct: 329 CESDYCEVINAALERLLTRKVDILTAKSHEELKFLRLARNSAMEALNRRLRDKA-LPAEL 387

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++  + F LP+ P+RIE+YDNSHI G    G MVV G++G ++ +YRKF +    V   D
Sbjct: 388 EELAELFGLPNPPERIEVYDNSHISGTHPFGVMVVCGKDGLLRKEYRKFKIQT--VLNGD 445

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D +MM  VL RRFS                    PS PD V++DGG+G +S+A  VL  L
Sbjct: 446 DYSMMHEVLFRRFS-----------------EESPSVPDFVLIDGGRGHISSAIQVLGDL 488

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
                I    +AKG  R+AG E F++  G  + L+    ++ +++++RDEAHRFAIT+HR
Sbjct: 489 G----IPFACMAKGSNRNAGEEVFYLPDGRKICLDPDSKLMLYMRKIRDEAHRFAITSHR 544

Query: 547 KRRKKAAYS-PLDEING 562
             R +   S  L +I G
Sbjct: 545 SSRDRTLSSAVLCDIPG 561


>gi|257464244|ref|ZP_05628623.1| excinuclease ABC subunit C [Fusobacterium sp. D12]
 gi|317061762|ref|ZP_07926247.1| excinuclease ABC subunit C [Fusobacterium sp. D12]
 gi|313687438|gb|EFS24273.1| excinuclease ABC subunit C [Fusobacterium sp. D12]
          Length = 590

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 180/612 (29%), Positives = 291/612 (47%), Gaps = 39/612 (6%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY M     +++YVGKA NL KR+KSY        +   ++  I++I + +  
Sbjct: 7   NIPENPGVYLMK-EKNKIIYVGKAKNLYKRVKSYFQKEVDREKTRELVKHIDDIEYILCP 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---IQGSY 121
           +E++ALLLE N+IK+  P++NI L+D+K++PY+ ++ K   PAL+  R +         Y
Sbjct: 66  SELDALLLENNLIKKYNPKYNIALKDEKTYPYLSLS-KETFPALHMIRKTKHLDLEHYEY 124

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       K    L + F +R C  ++ +   RPCL + +K C GPC  +   E+Y 
Sbjct: 125 FGPYP--FGAWKLKKILLKLFKVRDCFWNMNKKYKRPCLKYDMKTCLGPCVHKEVREEYQ 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E V + ++ L G      + +   M +      +E AI+ R+++  LS+++    S Y  
Sbjct: 183 EMVAKVRQILKGNTRECIQGLRSAMEEMAETFQFEKAIVLREQIQELSNLEKEQISEYGK 242

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F          +       G+  G  +       E     +    L  +Y   P
Sbjct: 243 EIDEDVFVWKEVYERMFLCVLNVREGKILGKISSNFLL-EEKVYENLEEELLLSYYRKYP 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK--IIEQALINAHRSHTQKL 356
            P++I+L E+ ++     IS  +    K       + + R+  ++  AL+N  +      
Sbjct: 302 LPKSIVLEEKYQQVLEEGISHLEMLFEKKIERYFPKIKSRRGELLNMALLNLEKDIENFH 361

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             +   +  +K+      L H P+RIE +D S+I G  AV  M V  E    K +YRKF 
Sbjct: 362 LKKEVIEEGMKELYSFLGLKHFPRRIECFDISNIQGKDAVASMSVSIEGKAAKGEYRKFK 421

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +   D    DD AMMR V+ RR+S+L   +                +PDV+++DGG GQ+
Sbjct: 422 IQCKDTP--DDFAMMREVIYRRYSKLEAKD----------------FPDVILIDGGLGQI 463

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           ++A  VL++L       ++S+AK  +     E +   +G    +      L   QR+RDE
Sbjct: 464 NSAGAVLEELGKIQFTDLLSLAKRDE-----EVYKYGEGLPYSIPKDKEALKIFQRVRDE 518

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRF IT HRK R K    S LD I GIG +RK+ LL+ F +V  +  ++ E L     +
Sbjct: 519 AHRFGITYHRKLRSKRVISSELDTIEGIGEVRKKKLLKKFSSVAGVKAATLEELEEC--V 576

Query: 596 SKKIACKIYNHF 607
            K +A +I    
Sbjct: 577 PKNVAIRIKEEL 588


>gi|224418910|ref|ZP_03656916.1| excinuclease ABC subunit C [Helicobacter canadensis MIT 98-5491]
 gi|253827863|ref|ZP_04870748.1| excinuclease ABC subunit C [Helicobacter canadensis MIT 98-5491]
 gi|313142424|ref|ZP_07804617.1| UvrABC system protein C [Helicobacter canadensis MIT 98-5491]
 gi|253511269|gb|EES89928.1| excinuclease ABC subunit C [Helicobacter canadensis MIT 98-5491]
 gi|313131455|gb|EFR49072.1| UvrABC system protein C [Helicobacter canadensis MIT 98-5491]
          Length = 612

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 195/628 (31%), Positives = 312/628 (49%), Gaps = 56/628 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQI 55
            +++P   GVY   D  GR+LYVGKA NL+ R+KSY         + N + RIT M+SQI
Sbjct: 19  LKKLPNQSGVYHYFDSEGRLLYVGKAKNLKNRVKSYFRFTPKLSVAPNLSARITQMVSQI 78

Query: 56  NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS 115
             +R+ V   E +AL+LE + IK+LKP++NILLRDDK++PY+ +      P +   R   
Sbjct: 79  AFMRYIVVENENDALILENSFIKQLKPKYNILLRDDKTYPYLCVDMSVDFPRIVLTRKIL 138

Query: 116 TIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
                 YFGP++S       ++SL   F L            + CL +QIKRC  PC G+
Sbjct: 139 KSSNIRYFGPYSSG--ARDLLDSLYEVFTLAQ--KESCLKGKKACLFYQIKRCLAPCEGK 194

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           +S E Y E + +A + +      +   + + M   +    +E A++ RDR++ +  I   
Sbjct: 195 VSKEAYQEILQKALECIHNPKK-ILSILEKKMEFLSENLRFEEAMVLRDRISKIKQINPL 253

Query: 235 NDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291
           +   +     +D F+L    N   +   F   G+   + T  +K+  E    ++ +  L 
Sbjct: 254 SSVDFARVEDLDIFALESEGNRGVLVKFFVREGRVVSSATNVIKSQYEINFEEVYTQSLI 313

Query: 292 QFYTDKPC--PENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
            +Y+      P+ +L+  +  E+   LE    KQ G K+ I  PK G+K+K+ + AL NA
Sbjct: 314 NYYSKTLPIKPKQVLIPYDFGEKREELEAFLAKQLGKKIPIHFPKSGDKKKLCDLALQNA 373

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
             +    +    + + +L    + F+L  IP +IEI+D SH  G   VG MVV  E  F+
Sbjct: 374 RETLKINV---TNEEALLLALKELFSLQSIPYKIEIFDTSHHRGKQCVGAMVVYEEG-FI 429

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K   R +      ++  D+ + MR +LERR                  ++S  S PD+ +
Sbjct: 430 KESCRHY-----LLEGSDEYSQMREMLERRI----------------ADFSTDSPPDLWV 468

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLN 521
           LDGG GQ++ A+ +L    V   + +I IAK        R+ G  ++    +K +   L+
Sbjct: 469 LDGGIGQINLAKDLLNSAGV--NLEVIGIAKEKLDAKAHRAKGSALDILRDEKRQEYRLS 526

Query: 522 MRDPILYFIQRLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L F+Q+LRDEAHRFAIT H ++++K    S + EI G+G   ++ LL  FG+ + 
Sbjct: 527 SSDKRLQFLQKLRDEAHRFAITFHQKQKQKTMQQSKVLEIKGVGKATQKRLLSYFGSFEA 586

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFH 608
           I  +S E L  +  +SK +A  +Y    
Sbjct: 587 IKEASLEELEKV--LSKNLAKSVYESLK 612


>gi|327398979|ref|YP_004339848.1| UvrABC system protein C [Hippea maritima DSM 10411]
 gi|327181608|gb|AEA33789.1| UvrABC system protein C [Hippea maritima DSM 10411]
          Length = 600

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 173/617 (28%), Positives = 293/617 (47%), Gaps = 43/617 (6%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P+ PGVY +      +LYVGKA +L+ R+KSY++          +I +  ++     
Sbjct: 15  KDIPKFPGVYIIFSSNDEILYVGKAKSLRDRLKSYLNPKEMYALKVSLIEEACSVEIITV 74

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EALLLE+N+IK  +P +NI+LRDDKS+PY+ I+   + P L+  R     +  YFG
Sbjct: 75  NSELEALLLESNLIKEYRPPYNIVLRDDKSYPYLRISFSERFPRLWIARRIKNKKDFYFG 134

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P    D ++  I  L+ +F +    D   +  +  C+ +Q+ +C  PC G IS E Y++ 
Sbjct: 135 PITPADKLKTLIKLLKNSFKIAQKNDKQCQGSSSACIYYQMGKCLAPCIGNISQEDYLKI 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           + E K  L+     +K+++   +N    + ++E AI  RD+L A+  ++N         D
Sbjct: 195 IEEIKHILTNPKK-IKKQLLDELNGYIERLEFEKAIQVRDKLKAIELLENKQSVSEIGED 253

Query: 244 CFSLYHNKNL---ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
              +   +      C+      F    G  T+F  TDS     +            +  P
Sbjct: 254 FCDVITFERSGVVVCVYIMSIRFSNVVGNRTYFFYTDSIDDGFKESFIVQYYLNQQQVIP 313

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L+ E      L +          V +  PK+G +++++E A  NA  +    ++   
Sbjct: 314 DVLLVDEGLNHLILKDA---LANQKSVDVIAPKKGARKRLLELAKKNAKMNLDIHMNQFK 370

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
            +  +L+   K   L   P  I++ D SH    + VG +V    +GF ++ YR++ L   
Sbjct: 371 HNIDMLEKLKKALNLAKTPYFIDVADISHTGFENVVGGVVRYTVSGFDRSMYRRYKLDAK 430

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
                 +   M  +L R    L+               S     D++++DGG  Q++ A+
Sbjct: 431 F-----EKEAMFEMLSRHKRLLLN--------------SAHKLADLILVDGGMVQVNTAK 471

Query: 481 GVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLNMRDPILYFIQRL 533
            V K L       +I I+K       KRS G   ++ + + G   V+ +   +L F+Q+L
Sbjct: 472 EVFKNL------PVIGISKEKIDGKAKRSLGDVKDRIYSENG---VVEVDGEVLSFLQKL 522

Query: 534 RDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           RDE HRFAI  HRK+R+     S LD I  IGP RK+ L + FG++  I  +S E ++S+
Sbjct: 523 RDEVHRFAIEYHRKKREDYVLASALDRIEFIGPKRKKALFEKFGSIDNIKTASIEEISSV 582

Query: 593 EGISKKIACKIYNHFHK 609
           +GIS+KIA  I     +
Sbjct: 583 KGISRKIASIIKEKLKE 599


>gi|325294967|ref|YP_004281481.1| UvrABC system protein C [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065415|gb|ADY73422.1| UvrABC system protein C [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 583

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/611 (27%), Positives = 278/611 (45%), Gaps = 39/611 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PGVY   D +G+V+YVGKA +L+ R+ ++++  N   +   +     +  + 
Sbjct: 4   KLQTVPDAPGVYFFKDKSGKVIYVGKAKSLKNRLSTHINCTNPNEKSYKITKNAVDFDYI 63

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V   E EAL LEA +IK+  P+FN+LL+DDKS+PY+++T   + P +   R    ++G  
Sbjct: 64  VVKNEKEALTLEAELIKKYLPKFNVLLKDDKSYPYLVLT-DEEFPTVKIVRKKDCLKGKK 122

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF          + + + F LR C +    +R++PCL + I+ C+ PC   +S + Y 
Sbjct: 123 FGPFVPPKNARNLKDLIHKVFKLRKCKE--LLNRSKPCLQYYIEMCTAPCCNYVSKKDYR 180

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V  A  FL+G   N   K+   + +A     +E A I RD+L A+  I       +  
Sbjct: 181 KQVEGALSFLTGNVKNHINKLYSEIEKAAENLQFEKAAILRDQLIAIKDIYEKGSIFFEN 240

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F +  N  +          G   G   F            +L +   +      
Sbjct: 241 YPSCDVFYIERNNGIFSGVKLTVRNGILYGKENFQFDPLDPWDENLLLEFSNYRLEQIDE 300

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
                +  +   E        F  + Y       K+  ++ + +    N   + T     
Sbjct: 301 SIVGTIWIKGTYEEENPPKEIFANFHYLGNEFSVKEIPEKVL-QLVKKNRSIARTNLNLE 359

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      LK   +   L   P+R+E++DNS + G ++VG  +V  +  FVK  YR++ + 
Sbjct: 360 K------LKFEYESVFLDTFPERVEVFDNSSLQGTASVGACIVWEKGEFVKKDYRRYKIK 413

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             +VK  +D   +  VL RRF ++ K E                 P++V++DGG GQL+ 
Sbjct: 414 --NVKGINDYGFLEEVLTRRFKRIKKGE--------------VKRPNLVLIDGGIGQLNV 457

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  V   L ++ R  + SIAK        E  +   GE +       +  F   LRDEAH
Sbjct: 458 ALKVRDSLGLDFR--VFSIAKRE------EIVYTDDGEVVETKKYPYLFRFFTSLRDEAH 509

Query: 539 RFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAIT +RK R      S LD+I GIG  RK+LL + +  +K ++ +S E L  I GI +
Sbjct: 510 RFAITFNRKLRNSLMVKSVLDDIKGIGTKRKKLLEKFYPDIKELAEASIEELVKI-GIPR 568

Query: 598 KIACKIYNHFH 608
           K+A ++     
Sbjct: 569 KVAKEVLEKIR 579


>gi|281412321|ref|YP_003346400.1| excinuclease ABC, C subunit [Thermotoga naphthophila RKU-10]
 gi|281373424|gb|ADA66986.1| excinuclease ABC, C subunit [Thermotoga naphthophila RKU-10]
          Length = 557

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 166/602 (27%), Positives = 285/602 (47%), Gaps = 58/602 (9%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           PE PGVY   D  G  +Y+GKA  L  R++SY+  N  T ++  +I + + +   V   E
Sbjct: 13  PEEPGVYIFKDK-GVPIYIGKAKILSNRLRSYL--NPQTEKVLRIIEEADELETIVVMNE 69

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EA +LEAN+IK+ +P++N+ L+D   +PYI I+D   IP +       + +G+YFGP+ 
Sbjct: 70  REAFILEANLIKKYRPKYNVRLKDTDFYPYIRISDDE-IPYVEIV-KRRSKEGTYFGPYT 127

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           SV  V+  +  LQ+    R+C  S  R   RPC L+ + RC+GPC G +  E + E +  
Sbjct: 128 SVQFVKNLLEILQKIMGFRTCK-SDLRRIKRPCFLYHLGRCTGPCIGNV--ESHEEAIRR 184

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246
            K+FLSG    + + +   M   +   D+E+A  +RD L  LS++      ++       
Sbjct: 185 LKEFLSGNMGEVFDYLKEKMETHSKMLDFENAAKYRDLLLNLSNVLESQGVVFEESISCD 244

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           +  + +           G   G  +F ++  +     +      R        P+ ++L 
Sbjct: 245 VLVHAHDL-FVVLRVRNGYLVGKISFEMEGGNVEDFIREYYVSGRG-----DIPKTLILE 298

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            + +E             Y           +    E  L  A ++   +L      +  L
Sbjct: 299 SDLDEMD-----------YSSLGFEYVGPPRSTTEEDLLEKAKKNLENELKMRGLRKEAL 347

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++  K   +   P RIE  D SH+ G   V  +VV  +    K+ YR++ +  +     D
Sbjct: 348 EELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKSDYRRYKIEQDH---PD 404

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D   +R V++RR+S+                      P+++ +DGG GQ++AA   LK++
Sbjct: 405 DYESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAVEALKEI 445

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
             +    ++ +AK        E+  V +   + L    P+L  + ++RDE HRFA++ HR
Sbjct: 446 GKDC--PVVGLAKK-------EETVVFENREIKLPHDHPVLRLLVQIRDETHRFAVSYHR 496

Query: 547 KRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KRR+K +  S LD + GIGP+RK+ L++ FG+++ I  +S E +A + G S +IA +I +
Sbjct: 497 KRREKESLRSVLDSVPGIGPIRKKKLIEYFGSLENIRSASLEEIARVIG-SAEIAKRILD 555

Query: 606 HF 607
             
Sbjct: 556 AL 557


>gi|317495219|ref|ZP_07953589.1| excinuclease ABC [Gemella moribillum M424]
 gi|316914641|gb|EFV36117.1| excinuclease ABC [Gemella moribillum M424]
          Length = 582

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/614 (28%), Positives = 276/614 (44%), Gaps = 47/614 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R+KSY   + H  +   ++S+I ++ + 
Sbjct: 8   KLESLPSNPGCYLYKDNIGEIIYVGKAKNLKNRVKSYFTGS-HNKKTQILVSKIEDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQGS 120
           +  +E EAL+LE N+IK+ +P +NI L+DDKS+PY++IT K + P L   R      +  
Sbjct: 67  IVNSEKEALILENNLIKKYRPYYNIRLKDDKSYPYLMIT-KEEHPRLVLTRKYKKNNKNI 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+    +  +    L + + LR C         RPC+ +QI  C GPC  EIS E+Y
Sbjct: 126 YFGPYVDSKSASRVKQILDKIYPLRRCNPVE----KRPCMYYQIGECIGPCAKEISQEEY 181

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + + + + FL+G    +   ++  M       ++ESA    D + ++     +     +
Sbjct: 182 KKQIAKIRSFLNGDTKEILNDLSEKMKNHINNLEFESAAQIHDFIKSIEVSIENQVVSDS 241

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D     +N    CIQ      G        +          QI+  +L Q+YT  
Sbjct: 242 GKIDRDYIGFCYNSEYICIQIFISRLGNIIERKVEYF--SLYDKPEQIVYSYLMQYYTVN 299

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I ++   E   LL           VK  +PK+G  RKI++    NA       L 
Sbjct: 300 KLPKEIYIN--IENIDLLSEVI------GVKTIIPKRGTHRKILDTVEENAKYFLNNNLE 351

Query: 358 TEISHQMILK---DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           TE   +  L+   +   +    +    I+ +DNS+IMG  AV   V          +YRK
Sbjct: 352 TEELKERKLQVTLNNIAEKLGVNSINSIDAFDNSNIMGVDAVSVKVNFTNGKKNPYKYRK 411

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           F +     +  +D   M+ VL R +     N E                  ++I+DGGK 
Sbjct: 412 FKVKET--QGINDVGTMKEVLYRNYKNGKTNTE------------------LLIIDGGKS 451

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
            L+AA  ++        + II + K  K     E       E +  + +     F ++++
Sbjct: 452 HLNAAIEIVHDKLKLYDVKIIGLVKNDKHIT--EYIITDDYEIIEFSKKSAEYLFFKQIQ 509

Query: 535 DEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE HRFAIT HR  + K    S LD I+GIG  RK++LL+SF +++ I  +  E L  + 
Sbjct: 510 DEVHRFAITYHRATKTKNMFTSSLDNISGIGKARKQVLLKSFSSIEEIKNAREEKLIEL- 568

Query: 594 GISKKIACKIYNHF 607
           GI K I  K+    
Sbjct: 569 GIPKNIVKKLKTEL 582


>gi|289581743|ref|YP_003480209.1| excinuclease ABC, C subunit [Natrialba magadii ATCC 43099]
 gi|289531296|gb|ADD05647.1| excinuclease ABC, C subunit [Natrialba magadii ATCC 43099]
          Length = 604

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 179/639 (28%), Positives = 288/639 (45%), Gaps = 78/639 (12%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +  +P  PGVYQ     G  LYVGKA +L+ R+ SY  ++  + RI+ MI + + +   V
Sbjct: 10  ARSLPREPGVYQFQ-ADGTTLYVGKAVDLRSRVGSY--ADPRSARISRMIDRADAVEIAV 66

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE +ALLLEAN+IKR +PR+N+ L+DDKS+P + +T  H  P +   RD S    + F
Sbjct: 67  TDTETQALLLEANLIKRHQPRYNVRLKDDKSYPMVQLT-DHPAPQIEITRDPSE-SATVF 124

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ +   VE  + +L+ T+ +R C+D  +  R RPCL +++  C+ PCT EI  E Y E
Sbjct: 125 GPYTNKRQVETVVKALRETYGVRGCSDHKYSGRDRPCLDYEMGLCTAPCTREIELETYAE 184

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN------HND 236
            V   ++F  G    L + + R M  A  ++ +E A   RDRL  +            + 
Sbjct: 185 DVTAVERFFEGETGILTDPLRREMETAAQEQHFERAANLRDRLETVEAFHGEGGEAVQSV 244

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL---------- 286
                +D   +      A +       G+        L+     T A             
Sbjct: 245 GDERAVDVLGVAIEGEDATVARLRAESGKLVDRERHTLEAPGAGTEAGAEAKTAAAGDGG 304

Query: 287 ------------------SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVK 328
                             + F+ Q+Y ++  P+ +LL E   +  +      +     V 
Sbjct: 305 LAAGAETADSQGGVPAVLAAFIVQYYAERDLPDALLLPERHNDDEVSTWLDAEG----VA 360

Query: 329 ITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNS 388
           + VP  G + K+++ AL NA R+  ++    +              L     RIE +D S
Sbjct: 361 VRVPGAGREAKLVDLALKNARRNVGRRDECGM--------LADALNLDTAR-RIEGFDVS 411

Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN 448
           H  G +AVG  V   +    K  YR+  L        DD   MR +LE R S+ +++ ++
Sbjct: 412 HAQGTAAVGSNVTFVDGSAEKADYRRKKLTDQ----NDDYDNMRALLEWRASRAVEDRDD 467

Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508
                               +DGG+GQL AA+  L  +  +  +  I++AK        E
Sbjct: 468 RPDPDLLL------------IDGGEGQLEAARDALSAVGWD--VPAIALAKAE------E 507

Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRK 568
              +   + L      P L+ +QR+RDE+HRFA+  H+  R     + LD++ GIGP  +
Sbjct: 508 TVIIPDRQ-LSWPSDAPHLHLLQRVRDESHRFAVQYHQTLRD-DVRTVLDDVPGIGPETR 565

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL  FG+V+ +  +S E L S+ G+ +K A  +    
Sbjct: 566 KRLLGRFGSVENVREASVEDLQSVSGVGEKTARTVKERL 604


>gi|148269795|ref|YP_001244255.1| excinuclease ABC subunit C [Thermotoga petrophila RKU-1]
 gi|189038126|sp|A5IKF6|UVRC_THEP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|147735339|gb|ABQ46679.1| Excinuclease ABC subunit C [Thermotoga petrophila RKU-1]
          Length = 557

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/602 (27%), Positives = 282/602 (46%), Gaps = 58/602 (9%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           PE PGVY   +  G  +Y+GKA  L  R++SY+  N  T ++  ++ + + +   V   E
Sbjct: 13  PEEPGVYIFKNK-GVPIYIGKAKRLSSRLRSYL--NPQTEKVFRIVEEADELETIVVMNE 69

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EA +LEAN+IK+ +P++N+ L+D   +PYI I+D   IP +   +       +YFGP+ 
Sbjct: 70  REAFILEANLIKKYRPKYNVRLKDTNFYPYIRISDDE-IPYVEIVKRKLRDG-TYFGPYT 127

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           SV  V   +  LQ+    R+C  S  +   RPC L+ + RC+GPC G  + E + E V  
Sbjct: 128 SVQFVRNLLEILQKIMGFRTCK-SDLKRIKRPCFLYHLGRCTGPCIG--NIESHGEAVRR 184

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246
            K+FLSG    + + +   M   +   D+E+A  +RD L  LS++      ++       
Sbjct: 185 LKEFLSGNMEEVFDYLKEKMETHSRMLDFENAAKYRDLLLNLSNVLESQGVVFEESISCD 244

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           +  + +           G   G  +F ++  +     +      R        P+ ++L 
Sbjct: 245 VLVHAHDL-FVVLRVRNGYLVGKISFEMEGGNVEDFIREYYVSGRG-----DIPKTLILE 298

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            + +E             Y           +    E  L  A ++   +L      +  L
Sbjct: 299 SDLDEMD-----------YSSLGFEYVGPPRSTTEEDLLEKAKKNLENELKMRGLRKEAL 347

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++  K   +   P RIE  D SH+ G   V  +VV  +    K+ YR++ +  +     D
Sbjct: 348 EELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKSDYRRYKIEQDH---PD 404

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D   +R V++RR+S+                      P+++ +DGG GQ++AA   LK++
Sbjct: 405 DYESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAVEALKEI 445

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
             +    ++ +AK        E+  V +   + L    P+L  + ++RDE HRFA++ HR
Sbjct: 446 GKDC--PVVGLAKK-------EETVVFENREIKLPHDHPVLRLLVQIRDETHRFAVSYHR 496

Query: 547 KRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KRR+K +  S LD + GIGP+RK+ L++ FG+++ I  +S E +A + G S +IA +I +
Sbjct: 497 KRREKESLRSVLDSVPGIGPIRKKKLIEYFGSLENIRSASLEEIARVIG-SAEIAKRILD 555

Query: 606 HF 607
             
Sbjct: 556 VL 557


>gi|301165884|emb|CBW25457.1| UvrABC system protein C [Bacteriovorax marinus SJ]
          Length = 620

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/633 (24%), Positives = 271/633 (42%), Gaps = 50/633 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGR---VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNI 58
            ++ +P  PG Y M    G    +LYVGKA NL+KR+ SY ++++ + +   ++S IN+ 
Sbjct: 8   KAKTLPNKPGCYLMKKAKGTDEIILYVGKAKNLRKRVSSYFNNSSKSPKTEILVSHINDF 67

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            F +T T+ EA +LE N+IK+  P++NI L+DDKS+PYI++      P L   R  S  +
Sbjct: 68  DFIMTDTDSEAFVLENNLIKKHSPKYNIRLKDDKSYPYIIVNLNEDFPRLVYERRPSKKK 127

Query: 119 GSY-FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           G   FGPF     + + +  L ++F LR C+   F  R  PCLL+Q+K+CS PC   I+ 
Sbjct: 128 GQLVFGPFVVGSNISEVLRVLTKSFNLRDCSLKEFNSRKEPCLLYQMKQCSAPCVDLINK 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN---- 233
             Y + +  A  F  G        +   M +    E +E A + RD +  L         
Sbjct: 188 SDYSKDLDLALSFFRGSGREGVLALEEKMFKYAELEQFERAALLRDNIEILKTFLEGSKQ 247

Query: 234 ---HNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNR-GTCTFFLKTDSESTNAQILSYF 289
                 S    +D  + +  +    I       G         F   D   +    ++ +
Sbjct: 248 TNAEISSSVKNIDIVAYHVGEVEIDISLYMMREGVLLGHKNFHFPAIDCSDSYDDEVAQY 307

Query: 290 LRQFYTD--KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
           + Q+Y+      P+ ++ +   E   +L    F+Q             +   +++  + +
Sbjct: 308 IFQYYSSTFDKMPDRVITNFSNEINEVLSK-AFEQVHEIKVKCTGAGRKFNSLMKLTMDH 366

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A      ++  E S  + L        L   P  +E YD +   G S     +V  +   
Sbjct: 367 AFEHQRVRILNEDSTYIGLNRLKDLLGLRERPVVLECYDIAIFQGKSPTASQIVFTDGRA 426

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K++YR F+L     +  +D AMM  V+ RR  +                    + PD+ 
Sbjct: 427 DKSKYRHFHLEERP-EGNNDFAMMSEVINRRIKK-------------------GNLPDIF 466

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----------GPKRSAGMEKFFVKKGE 516
           ++DGG GQ++   G LK  NVE  + ++ IAK                         +  
Sbjct: 467 VVDGGIGQVNIFLGALKDHNVE--VPVVGIAKSKVSKKSTFKSKEVERTDERLIIPGRSN 524

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAIT-THRKRRKKAAYSPLDEINGIGPLRKRLLLQSF 575
              L+    +   + ++RDEAHRF+    H++ ++K   S +D++ G+GP+ K+ ++   
Sbjct: 525 PFQLSKCKSLFRILTQMRDEAHRFSRRLHHKEEKRKLISSWIDQVEGVGPITKKKIISRL 584

Query: 576 -GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             +V  +   +   + S   +SKK+A  I    
Sbjct: 585 DKSVSELKLMNERDIESYFEVSKKVAKAIVKTL 617


>gi|157737038|ref|YP_001489721.1| excinuclease ABC subunit C [Arcobacter butzleri RM4018]
 gi|189038019|sp|A8ESX8|UVRC_ARCB4 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157698892|gb|ABV67052.1| excinuclease ABC, subunit C [Arcobacter butzleri RM4018]
          Length = 616

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 189/638 (29%), Positives = 307/638 (48%), Gaps = 64/638 (10%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             +Q+P   GVYQ  D  G +LY+GKA  L+ R+KSY         ++  + RI  MIS+
Sbjct: 6   KLQQLPNDAGVYQYFDKNGHLLYIGKAKILKNRVKSYFKFTPKLQPADKLSPRIYKMISE 65

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           + +  + V   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P L   R  
Sbjct: 66  VESCEWIVVPNEHDALILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRI 125

Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
              +   YFGP++        ++S+     L      V     + CL +QI++C  PC  
Sbjct: 126 QKSKSIKYFGPYS--TGARDMLDSIYEIVPLVQKKSCV--KGKKACLFYQIQKCLAPCEN 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +IS E+Y + V  A +++      + + +   M Q +    +E A+  RDR+  +   Q 
Sbjct: 182 KISKEEYAKIVENALEYIYNKTKLISK-LNEKMLQYSNDFRFEEAMTLRDRIKTIEKSQI 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI----- 285
            +D        +D F++  N   A I   F   G+   +   FLK D+     +      
Sbjct: 241 KSDIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEA 300

Query: 286 LSYFLRQFYTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
               +  +Y ++    P+ IL++ E E T+ LE     ++  K+K+  PK+ +KR+I+  
Sbjct: 301 YERAIINYYDNEIPLLPKEILIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNI 360

Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
           AL N       ++    +   I ++  + F L  +P  IE +DNSH+MG + VG M+V  
Sbjct: 361 ALNNCDE--LLRIENSKNQTSIYEELKELFNLQTLPYLIESFDNSHMMGQATVGAMIVWN 418

Query: 404 E--NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461
           E  N F K  +R +NL        D+ + M+ +L RR     KN                
Sbjct: 419 ESLNTFDKKAFRHYNLESK-----DEYSQMKEMLIRRIESFEKN---------------- 457

Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKK 514
             PD+ I+DGG+  L  A  +++ + V   + II+IAK        R+ G   +    K 
Sbjct: 458 PAPDLWIIDGGETLLKLAFDIVQSVGV--NLDIIAIAKEKIDAKAHRAKGKAKDIIHYKT 515

Query: 515 GE----ALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKR 569
                 +  L   D  L F+QR RDEAHRFAIT H+K +R +     L +I GIG  + +
Sbjct: 516 KNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQISLLQIKGIGEAKIK 575

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LL  FG  + I ++S + L ++  +++K A  I ++F
Sbjct: 576 KLLLYFGEFEKIKKASFDELKTV--LNEKDASTILDYF 611


>gi|157363428|ref|YP_001470195.1| excinuclease ABC subunit C [Thermotoga lettingae TMO]
 gi|229557870|sp|A8F4P7|UVRC_THELT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157314032|gb|ABV33131.1| excinuclease ABC, C subunit [Thermotoga lettingae TMO]
          Length = 558

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/612 (27%), Positives = 288/612 (47%), Gaps = 65/612 (10%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN--HTHRITHMISQINNIR 59
            ++  P  PGVY         +YVGKA  L+ R+ SY + +N  ++ +I  ++++   + 
Sbjct: 6   KAKLAPLLPGVYIFYGKNKEYIYVGKAKRLRNRLLSYFNRSNGKYSKKIQAIVNEAEELD 65

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119
           + V   E EALLLEAN+I   KP++N++L+D + +PYI IT K   PA+   R   +  G
Sbjct: 66  YIVVSNEREALLLEANLIFNHKPKYNVMLKDAEFYPYIEIT-KELFPAVQIVR-IRSTGG 123

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGP+  V  V+  I+ LQ+ +  R+C   + +  T+PC+ F + RC+ PCTG++  + 
Sbjct: 124 EYFGPYTDVKFVKDLIDCLQQVYQFRTCRRDMSKS-TKPCMEFYMHRCAAPCTGDLEPDS 182

Query: 180 YMEFVHEA-KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           Y+    +  ++ L+G      + I   M +     D+E+A  +RD L    ++      +
Sbjct: 183 YINSSIQPLRRVLNGDISETLDLIEEKMKKHAKMMDFENAAKYRDLLVKFENVMQRQGVV 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--D 296
             +         +NL  I      +   R      +   S   ++  L  F+  +Y    
Sbjct: 243 LEQ--------WRNLDVIGRFKNSYAVLRIRGGHVVGKLSYELDSTKLEDFIFHYYMVGK 294

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              PE ++L       + +     +                 K+ E+ L  A  +   + 
Sbjct: 295 NELPEAVILERNINFDAEIYFGRPRD----------------KLEEELLHKARENAKNQA 338

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
            T    + +L    K   L   P +IE +D SH+ G   V  +VV  +    KN+YR + 
Sbjct: 339 YTSGLRKDLLNKMVKVLNLNRYPMKIEGFDVSHLHGKLTVASVVVFFDGLPRKNEYRHYR 398

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
            + + +   DD   ++ +++RR+S+                      PD++ +DGG GQ+
Sbjct: 399 FNSDRI---DDFLTLKELVKRRYSK-------------------HELPDMIFVDGGTGQI 436

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           +A    L ++  E    ++ +AK  +           +   L+L    PIL  + R+RDE
Sbjct: 437 NAVVEALMEIGKECD--VVGLAKQNE-------IVCTRFGELILPFDSPILRTLVRIRDE 487

Query: 537 AHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           AHRFA + HRK R+K+   S LDEI GIGP RK+ L+++FG+VK I  ++ + +A + G 
Sbjct: 488 AHRFANSFHRKLRRKSALSSILDEIPGIGPKRKKKLIEAFGSVKNIRSATLQEIAEVLG- 546

Query: 596 SKKIACKIYNHF 607
           S+K+A +I +  
Sbjct: 547 SRKLAAEILSRL 558


>gi|160903285|ref|YP_001568866.1| excinuclease ABC, C subunit [Petrotoga mobilis SJ95]
 gi|238687153|sp|A9BGW2|UVRC_PETMO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|160360929|gb|ABX32543.1| excinuclease ABC, C subunit [Petrotoga mobilis SJ95]
          Length = 574

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/607 (27%), Positives = 278/607 (45%), Gaps = 48/607 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIRFTV 62
            +P+ PGVY   +  G  +Y+GKA NL+ R+ SY +  N+    +   M+ +  N+ + +
Sbjct: 9   NIPKKPGVYIFKNNKGDPIYIGKAKNLKNRVSSYFNKKNYIGNEKTYEMLEKATNLDYII 68

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T  E +A +LEAN+I   KP++NI+L+D + +PYIL+T   + P +   R     +G ++
Sbjct: 69  TSNENQAFILEANLIYIHKPKYNIMLKDTRVYPYILVT-DEQFPKIKYIRTKKEEKGKFY 127

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP++ V  V+  I  LQ  + +RSC D     +++PC L+ + RC GPC  ++    Y E
Sbjct: 128 GPYSDVKFVKDVIEVLQSVYKIRSC-DRDLGRKSKPCFLYHLGRCYGPCYKDVDETVYQE 186

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V + KK LSG    +K  + + M      ++YE A   RD L  L ++       Y   
Sbjct: 187 SVEKVKKVLSGDIEEVKNYLQKAMMDYAKIKNYEKAAQMRDTLFKLENLFEEVAVEYKNG 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
               +   +    +       G      +F ++   E        +  + +   K  P +
Sbjct: 247 KNLDIIMYEPPVYL-VLIVRKGYLISKLSFTMEGTLED-------FLYQYYIVRKNEPPS 298

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ++ +        +          K    + K G+  KI E A  N       ++  +   
Sbjct: 299 LISTL---YNEEISPEILDFLKEKGLKRIEKIGKSSKIYEMAYTNLQE----EIKRQKDL 351

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              LK   +  +L   PK IE  D SH+ G   V  +V        K  YRK+ L  +D+
Sbjct: 352 SFALKQAKEILSLKKEPKIIEGIDISHLQGLYTVASLVRFENGKPKKEGYRKYRL--DDI 409

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           K  DD   +R V++RR+ +                      PD++ +DGGKGQ+++A   
Sbjct: 410 KAPDDFESIRTVIKRRYQK-------------------HELPDLLFIDGGKGQVNSAVEA 450

Query: 483 LKKLNVE-NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           LK++      + ++ IAK  +R       F      L L +  P+L  +  +RDE HRFA
Sbjct: 451 LKEIGYSLKDVDVVGIAKEDER-----IVFPGDIPDLHLPLDHPVLRLLIYVRDETHRFA 505

Query: 542 ITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I  +R  R K    + LD+I GIGP RK+ L++ FG ++ +  +S E ++ +   S+KIA
Sbjct: 506 IGFNRSLRSKRFEKTKLDDIYGIGPKRKKELIKHFGGIQKLLEASIEEISKVVK-SEKIA 564

Query: 601 CKIYNHF 607
            +I    
Sbjct: 565 KRIKESL 571


>gi|315636230|ref|ZP_07891484.1| excision endonuclease subunit UvrC [Arcobacter butzleri JV22]
 gi|315479591|gb|EFU70270.1| excision endonuclease subunit UvrC [Arcobacter butzleri JV22]
          Length = 616

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 188/638 (29%), Positives = 305/638 (47%), Gaps = 64/638 (10%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             +Q+P   GVYQ  D  G +LY+GKA  L+ R+KSY         ++  + RI  MIS+
Sbjct: 6   KLQQLPNDAGVYQYFDKNGHLLYIGKAKVLRNRVKSYFKFTPKLQPADKLSPRIYKMISE 65

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           + +  + V   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P L   R  
Sbjct: 66  VESCEWIVVPNEHDALILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRI 125

Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
              +   YFGP++        ++S+     L      V     + CL  QI++C  PC  
Sbjct: 126 QKSKSIKYFGPYS--TGARDMLDSIYEIVPLVQKKSCV--KGKKACLFHQIQKCLAPCEN 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +IS E+Y + V  A +++      + + +   M Q +    +E A+  RDR+  +   Q 
Sbjct: 182 KISKEEYAKIVENALEYIYNKTKLISK-LNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI----- 285
            +         +D F++  N   A I   F   G+   +   FLK D+     +      
Sbjct: 241 KSGIDLATNEDIDIFAINTNNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEA 300

Query: 286 LSYFLRQFYTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
               +  +Y ++    P+ IL++ E E T+ LE     ++  K+K+  PK+ +KR+I+  
Sbjct: 301 YERAIINYYDNEIPLLPKEILIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNI 360

Query: 344 ALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVG 403
           AL N       ++    +   I ++  + F L  +P  IE +DNSH+MG + VG M+V  
Sbjct: 361 ALNNCDE--LLRIENSKNQTSIYEELKELFNLQTLPYLIESFDNSHMMGQATVGAMIVWN 418

Query: 404 E--NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461
           E  N F K  +R +NL        D+ + M+ +L RR     KN                
Sbjct: 419 ESLNTFDKKAFRHYNLESK-----DEYSQMKEMLIRRVESFEKN---------------- 457

Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKK 514
             PD+ I+DGG+  L  A  +++ + V   + II+IAK        R+ G   +    K 
Sbjct: 458 PAPDLWIIDGGETLLKLAFDIVQSVGV--NLDIIAIAKEKIDAKAHRAKGKAKDIIHYKT 515

Query: 515 GE----ALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKR 569
                 +  L   D  L F+QR RDEAHRFAIT H+K +R +     L +I GIG  + +
Sbjct: 516 KNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQISLLQIKGIGEAKIK 575

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LL  FG  + I ++S + L ++  +++K A  I ++F
Sbjct: 576 KLLLYFGEFEKIRKASFDELKTV--LNEKDASTILDYF 611


>gi|88602450|ref|YP_502628.1| excinuclease ABC subunit C [Methanospirillum hungatei JF-1]
 gi|119367670|sp|Q2FPC6|UVRC_METHJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|88187912|gb|ABD40909.1| Excinuclease ABC subunit C [Methanospirillum hungatei JF-1]
          Length = 520

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/558 (29%), Positives = 270/558 (48%), Gaps = 46/558 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +PE PG YQ  D  G +LYVGKA NL+KR+ SY    + T RI  ++S I +I  
Sbjct: 4   IDLTTIPEEPGCYQFKDETGTILYVGKAKNLKKRVSSYFQKKSITPRIDILVSLIRDIDV 63

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQG 119
            VT +EVEAL+LE N+IK+ +P++NI L+D KS+ +I I++    P +   RD +    G
Sbjct: 64  IVTSSEVEALILENNLIKKYQPKYNIDLKDAKSYAFIQISN-DPFPRIGIARDRTVKKTG 122

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           + +GPF S    ++ +  +++TF LR+C         R CL   +  C+ PCTG+IS  +
Sbjct: 123 TLYGPFVSAAERDQILKFVKQTFHLRTCKKMT----KRACLRSHLGTCAAPCTGKISEPE 178

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI- 238
           Y   V  A   L G + +L   + + M      E+YE A++ RDR+AA+ ++        
Sbjct: 179 YQYLVKSADYLLKGKSQDLIYDLRKEMETFAAAEEYEKALVIRDRIAAIENLSERQYVQR 238

Query: 239 --YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
              +     +   + +   +       G       F      +  +      F+ Q+Y+ 
Sbjct: 239 QKKSDEHIINYLVSGDTVYLILFHVERGSLTSKEEFVFPETEDFLD-----EFILQYYSS 293

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P  ++L         +E       G  V +T+PKQGEK+ +++ A  N   S     
Sbjct: 294 TKPPNELILPSLPGSG--MEEYLTHIRGSHVTLTIPKQGEKKHLLDLAYKNLEVSFF--- 348

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
               + +M L +  +   +   P+ IE +D SH+ G   V  MV   +    K  YR++ 
Sbjct: 349 ----TGKMRLAELGEALHMDTAPEVIECFDISHLRGTGTVASMVSFRDGKPDKRNYRRY- 403

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
              N     DD A M  V++RR+S+L++ +                 PD++++DGG GQL
Sbjct: 404 -KINSAGPSDDYAAMAEVVKRRYSRLLREK--------------SPMPDLIVVDGGPGQL 448

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
            +A  +L++L++   I IISIAK  +     E +   +   L +  + P    IQ +RDE
Sbjct: 449 KSAHAILEELSL--PIPIISIAKREE-----EIYIPGRNTPLSIQKKSPASLLIQEIRDE 501

Query: 537 AHRFAITTHRKRRKKAAY 554
           AHRFAIT  +K R+K+  
Sbjct: 502 AHRFAITYQKKLRQKSIK 519


>gi|237755865|ref|ZP_04584461.1| excinuclease ABC subunit C [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691976|gb|EEP60988.1| excinuclease ABC subunit C [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 576

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/606 (27%), Positives = 279/606 (46%), Gaps = 46/606 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           + PE PGVY   D   + +Y+GKA N++ R+K++        +   +  + ++I + +T 
Sbjct: 14  KAPEEPGVYLFKDRKKQYVYIGKAVNIKNRLKNHFQQLKVDPKERKIFKESSSIEWIITK 73

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           ++ EA +LE  +IK+ KP++N+ L+   S+P ++IT   + P +   R    I+G YFGP
Sbjct: 74  SDYEAFVLENELIKQYKPKYNVRLKSGSSYPMLVIT-DEEYPTVKISRKFGEIKGEYFGP 132

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F            + + F LR+C       R+  C  + +  CSGPC  +IS ++Y E  
Sbjct: 133 FLPARTARAMKELIHKLFKLRTC--DPLPKRSLVCFDYHLGLCSGPCADKISMKEYKEDA 190

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-YNRMD 243
             AK FLSG   N+  ++   +N  T K  +E A + RD++ A+       + I     +
Sbjct: 191 KVAKAFLSGNVKNVIYELYDKINDYTNKLMFEKAAVIRDQIKAIEMTIKKQEVIGVGVEE 250

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
               Y +   A +       G            + E      ++     +  D   P+ I
Sbjct: 251 ADIFYFSSGRAYLIIVR---GNRIVGKDELKVQNEEFEEGNEIAIITDYYSKDTYIPKTI 307

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           + +++ E+   L+    K    +V+I      +    I++ +              I + 
Sbjct: 308 ITNKDLEDLENLKQWLLKAKNKEVEILTSLPEQVEGFIKRNIN-------------IENV 354

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             LK   ++     +P R+E +D SH+ G   VG  VV       K +YR+F +    V 
Sbjct: 355 ENLKSEFERVFGFSLPNRVECFDISHLDGKFTVGSCVVWENGSMNKREYRRFRVKT--VN 412

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A +R VL RRF +  + +                 P++V++DGGKGQLS    V 
Sbjct: 413 YIDDFASLREVLTRRFRRYKEMDNP---------------PELVLIDGGKGQLSQGLTVR 457

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           ++L +EN + + SIAK        E  +   G+ + L     +L F  ++RDEAHRFAIT
Sbjct: 458 QELGLEN-LRVFSIAKKD------EIIYTDDGKEVRLFENQELLKFFTKIRDEAHRFAIT 510

Query: 544 THRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            +RK R+K    S LD I GIG  RK +L +++ T+  I ++S E L  + GI   ++ K
Sbjct: 511 YNRKLREKEGLKSVLDNIEGIGEKRKEILYRTYKTLDNILKASDEELKKL-GIPASVSQK 569

Query: 603 IYNHFH 608
           I  +  
Sbjct: 570 IKEYLK 575


>gi|320539477|ref|ZP_08039146.1| excinuclease UvrABC, endonuclease subunit [Serratia symbiotica str.
           Tucson]
 gi|320030602|gb|EFW12612.1| excinuclease UvrABC, endonuclease subunit [Serratia symbiotica str.
           Tucson]
          Length = 517

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/523 (33%), Positives = 274/523 (52%), Gaps = 30/523 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D  G V+YVGKA +L+KR+ SY      + +   ++  I  I  TVT 
Sbjct: 13  TLTSQPGVYRMYDATGTVIYVGKAKDLKKRLASYFRQQIASRKTETLVKNIAQIDITVTH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N IK+ +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGP
Sbjct: 73  TETEALLLEHNYIKQYQPRYNVLLRDDKSYPLIFLS-ADSHPRLAIHRGAKHAKGEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEF 183
           F +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y + 
Sbjct: 132 FPNSYAVRETLVLLQKLFPIRQCENSVYRNRSRPCLQYQISRCLGPCVAGLVSEEEYRQQ 191

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           V     FLSG +  +  ++   M  A+ + ++E A   RD++ A+  +          + 
Sbjct: 192 VDYVHLFLSGKDQQVLNQLIEQMENASKRLNFEEAARIRDQIQAVRSVTERQFVSGGSDD 251

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----K 297
           +D   +  N  +AC+   F   G+  G+ ++F K    +   +++  F  QFY      +
Sbjct: 252 LDVIGVAFNAGIACLHVLFIRQGKVLGSRSYFPKVPGGTEIGEVVQTFFGQFYLQGSQAR 311

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  ILL     +  LL  S  +  G K++I    +G++ + ++ A  NA  +   KL+
Sbjct: 312 TLPSEILLDFNLLQKKLLAESLCELAGRKIQIQNKPRGDRARYLKLARTNAAIALASKLA 371

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + +    L +  K   L     R+E +D SH MG   V   VV   NG ++++YR++N+
Sbjct: 372 QQSTFHQRLAELAKVLNL-CEINRMECFDISHTMGEQTVASCVVFDGNGPLRSEYRRYNI 430

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               +   DD A M  VL+RR+ + +  ++                PDV+ +DGGKGQL 
Sbjct: 431 --TGITPGDDYAAMAQVLKRRYGKALDEKK---------------IPDVIFIDGGKGQLG 473

Query: 478 AAQGVLKKLNV---ENRITIISIAKGPKRSAGMEK-FFVKKGE 516
            A  +   LNV   + +  +I IAKG  R AG+E  FFV +GE
Sbjct: 474 MAIEIFGSLNVSWDKKKPLLIGIAKGADRKAGLETLFFVPEGE 516


>gi|225848378|ref|YP_002728541.1| excinuclease ABC subunit C [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644068|gb|ACN99118.1| excinuclease ABC subunit C [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 572

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/606 (27%), Positives = 284/606 (46%), Gaps = 46/606 (7%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E  P+  GVY   +   + +Y+GKA N++ R+K++        +   + ++ + I + +T
Sbjct: 11  ENAPQESGVYLFKNKKKQYIYIGKAVNIKNRLKNHYQQIKTDPKERKIFAESSQIEWIIT 70

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            ++ EA +LE  +IK+ KP++N+ L+   S+P ++IT   + P +   R    I+GSYFG
Sbjct: 71  KSDYEAFVLENELIKQYKPKYNVRLKSGSSYPMVVIT-DEEYPTVKISRKYGEIKGSYFG 129

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PF          + + + F LR+C     R+    C  + +  CSGPC  +IS + Y E 
Sbjct: 130 PFLPAKTARHMKDLIHKLFKLRTCDPMPIRNIV--CFDYHLGLCSGPCANKISKKDYNED 187

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
              AK FLSG   ++   +   +N+ T K  +E A + RD++ A+  +    + +   + 
Sbjct: 188 AKIAKTFLSGNAKDVLYNLYDKINEYTQKLMFEKAAVIRDQIKAIETVIRKQEVLGIPIQ 247

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
              +++  +                        D E  +       L  +Y +   PE I
Sbjct: 248 EADVFYFIDKRVFLIVVRGHTIIGKEELRISNQDFEEGSEVF---VLTSYYENNYIPEKI 304

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           +L+++ ++   L+   ++  G KV+I      + +  I++ +  A               
Sbjct: 305 ILNKKVQDIDNLKQWLYQSKGKKVEIDFAILPQIKNFIDRNINIADL------------- 351

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             LK+  +K     +P+RIE +D SH+ G   VG  VV  +    K +YR+F +    V 
Sbjct: 352 ETLKEVFEKTFNFPLPRRIECFDISHLQGEFTVGSCVVWEDGYMNKKEYRRFKVKT--VD 409

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A +R VL RRF + ++ E                 P ++++DGGKGQLS    V 
Sbjct: 410 KVDDYASLREVLTRRFRKYLEMENP---------------PQLILIDGGKGQLSQGIEVR 454

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           +KL +   I + SIAK        E  +   G+ + L    P+L    +LRDEAHRFAI+
Sbjct: 455 EKLGL--NIKVFSIAKKE------EILYTDDGKEIKLFDSLPLLKLFTQLRDEAHRFAIS 506

Query: 544 THRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            +RK R+K    S LD I GIG  RK +L +++ T+  I ++  E L  + GI   +A K
Sbjct: 507 YNRKLREKEGLKSILDNIEGIGEKRKEVLYRTYKTLDNILKAPDEELKKL-GIPTSVAQK 565

Query: 603 IYNHFH 608
           I  + +
Sbjct: 566 IKEYLN 571


>gi|307353383|ref|YP_003894434.1| excinuclease ABC subunit C [Methanoplanus petrolearius DSM 11571]
 gi|307156616|gb|ADN35996.1| excinuclease ABC, C subunit [Methanoplanus petrolearius DSM 11571]
          Length = 516

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/553 (31%), Positives = 269/553 (48%), Gaps = 45/553 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           M+++ +P+ PG Y   D  G  +Y+GKA NL+KR+ SY   + H  +   M+    +  +
Sbjct: 1   MNTDSLPDEPGCYIYRDSGGTPVYIGKAKNLKKRVSSYFTGS-HDPKTNAMLGVAEDFDY 59

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E EAL+LE N+IKR +P++NI LRD K++ YI IT   K P +   R      G 
Sbjct: 60  IVTRSETEALILENNLIKRYQPKYNIDLRDSKNYAYIHITGG-KFPRIGIARR-KGDSGE 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF S    +  ++ +++ F LRSC     + R R CL + +  CS PC G+IS E Y
Sbjct: 118 YFGPFVSAKERDYVLSVVRKIFRLRSCR----KLRKRACLRYHMGTCSAPCIGQISEEDY 173

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238
            + V +A   L G N  +   +   M   +   ++E A++ RD++ A+ H+         
Sbjct: 174 SDLVRKAVSVLKGNNSEIISSLKEEMAGLSAAREFEKAMVVRDQMTAVRHLSERQHIDQK 233

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            +  +    Y  +        F  +    G    F+    E +  +    F+ Q+Y +  
Sbjct: 234 KDTDEDIINYTAREGIMYLMLFSVYKGTLGEKKEFVFDCDEGSFGE----FIIQYYAENE 289

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  ++L E  +    LE       G KV++TVP++GEK+ +++    N         + 
Sbjct: 290 PPRELILPEIPD--EALEEYLTSVKGMKVRVTVPQKGEKKALLDLVKKNIESLFFGGEAK 347

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
                  ++   K   L   P  IE +D SH+ G + VG MV        K  YR+F + 
Sbjct: 348 -------VERLRKALHLTESPDVIECFDISHLSGTAMVGSMVQFRYGKPDKRNYRRFRIK 400

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD A +  V+ RR+S+L+K E  L              PD++++DGGKGQLS+
Sbjct: 401 D--VEGIDDFAAIAEVVGRRYSRLVKEEAEL--------------PDLIVIDGGKGQLSS 444

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L+KL+V+  I +IS+AK  +     E F       L L   D    F+Q +RDEAH
Sbjct: 445 ALAELEKLDVD--IPVISLAKREE-----EVFIPGLSAPLPLKKNDKASLFLQEIRDEAH 497

Query: 539 RFAITTHRKRRKK 551
           RFAI+ +R  R K
Sbjct: 498 RFAISYNRLLRSK 510


>gi|154150636|ref|YP_001404254.1| excinuclease ABC subunit C [Candidatus Methanoregula boonei 6A8]
 gi|153999188|gb|ABS55611.1| excinuclease ABC, C subunit [Methanoregula boonei 6A8]
          Length = 517

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 172/554 (31%), Positives = 279/554 (50%), Gaps = 45/554 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           + +  +PE PG Y   D  GR++YVGKA NL+KR+ SY    +H  +   +++ I ++ F
Sbjct: 2   IDTAGLPENPGCYLYSDADGRIIYVGKAKNLKKRVSSYFTKKDHDPKTRSLVAHIASVDF 61

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TE EA LLE  +IK+ +P++NI L+D K + +I +T + + P L   R ++    +
Sbjct: 62  VVTGTETEAFLLENTLIKKHQPKYNIDLKDAKRYAWIELT-REEFPRLVIARRATDDG-T 119

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           +FGPF S    ++ +   ++ F LR+C     +   RPCL   ++ CS PCTG++S  +Y
Sbjct: 120 FFGPFVSAAERDRVLAVAKKVFHLRTCK----KLPKRPCLRRHMQSCSAPCTGKVSPAEY 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V +A   L G +  L +++   M +   +E+YE A++ R+ + A+ H+ +       
Sbjct: 176 DENVKKAALLLKGKSTELLDELRHEMAERASREEYERALVLRNEINAIGHLADRQHVERR 235

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           R    D  +       A +       G       F  +   +     IL  FL Q+Y+D+
Sbjct: 236 REYDQDVIAYQVTDGKAYLTVFNVERGTLANKEEFTFEAGED-----ILEEFLVQYYSDR 290

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  ++L  E +    L     ++ G +V+I VP++GEKR++++ A  N   +  +   
Sbjct: 291 EPPNELILGHETDP--ALAGFLSEKKGRQVEIVVPQRGEKRQLLDLARKNLEIAFFRDTL 348

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                     +      LPH P  IE +D SH+ G + VG MV   +    K+ YR+F +
Sbjct: 349 KSA-------ELGAALGLPHPPAVIECFDISHLSGTAMVGSMVQFRDGRPDKSGYRRFKI 401

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V+  DD A +  V++RR+++LI                   +PD+VI+DGGKGQLS
Sbjct: 402 KT--VEGIDDFASIAEVVKRRYTRLIDEH--------------APFPDLVIIDGGKGQLS 445

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AAQ  L  L    +  +I+IAK  +     E +       L L+ +   L ++  +RDEA
Sbjct: 446 AAQESLAALGASAQ-PVIAIAKREE-----EIYTPHNALPLRLDKKSIALRYVHEIRDEA 499

Query: 538 HRFAITTHRKRRKK 551
           HRFAIT +R  RKK
Sbjct: 500 HRFAITYNRLLRKK 513


>gi|320538515|ref|ZP_08038376.1| excinuclease ABC subunit C [Treponema phagedenis F0421]
 gi|320144622|gb|EFW36377.1| excinuclease ABC subunit C [Treponema phagedenis F0421]
          Length = 659

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 176/667 (26%), Positives = 289/667 (43%), Gaps = 89/667 (13%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           + P+  GVY   D  G ++YVGKA +L+ R+ SY  S     +   ++S+   + +  T 
Sbjct: 19  KAPKSSGVYLWADAGGVIIYVGKAKSLKNRLSSYFTSK-KDIKTRILVSRAAGLEYIQTK 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EALLLE  +IK+ KPR+NI L+D K++P + +T+  + P LY+ R+       YFGP
Sbjct: 78  NEYEALLLENTLIKKHKPRYNINLKDGKTYPVLKLTN-EQFPRLYRTRNIHNDGAQYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V AV++ ++ ++R + LR C     + R +PCL + I RC  PC G  S E+Y + V
Sbjct: 137 FPNVAAVDQFLDLVKRNYKLRQCK--TLKKRAQPCLYYHIGRCDAPCCGLGSREEYHKEV 194

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNR 241
            E    L G      +K+   M +A  ++++E A   RD + A+  I+  N   D     
Sbjct: 195 EEIALLLDGDADTAVKKLTEKMKEAAAQKEFERAARIRDGIQAVYAIRGQNIVEDMDPEG 254

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +      +          G+  G   +  ++  +    +ILS FL  +YT      
Sbjct: 255 RDYIAWASEAAMVTFAVLRMRGGRLVGRDLYRTQSLKDEE--EILSEFLIAYYTKAELIP 312

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPK---------------------------- 333
             +         L E  F +++  + KIT+                              
Sbjct: 313 PHIFVPSESGHELAEKWFKEEFNVETKITMIPLEKSEEKSFEESSRAAAIPEPKEKSFLS 372

Query: 334 -------------------QGEKRKIIEQALINAHRSHTQKLSTE-ISHQMILKDFTKKF 373
                               G    +    L +   +               L++     
Sbjct: 373 VSLANTCANSEVAEPENMYAGNSFGLPNSVLAHHRAALAMAKFNAGEDAARRLREAGDYP 432

Query: 374 ALP---------HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
           AL          +IP RIE +D +H+ G   V  ++   +    K  YR F L   D   
Sbjct: 433 ALEELQKILSLPNIPHRIEGFDIAHLYGKYTVASLISFKDGNPDKKNYRIFRLKNTDGV- 491

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD   MR  + RR+++LI  + +L              PD++++DGG GQ++AA+G+L 
Sbjct: 492 IDDFESMREAVARRYTRLINEKADL--------------PDLILIDGGIGQVNAAKGILD 537

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
            L  E  I I+ +A+  +     E F     + +VL  R   L  +QR+RDE HRFA T 
Sbjct: 538 AL--EADIPIVGLAEKDE-----ELFLPHTSKPIVLPKRSVALRMLQRVRDETHRFATTR 590

Query: 545 HRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +R  R K       + +  IG  R  +LL+ FG+++ + ++S ET+A+   IS + A ++
Sbjct: 591 NRHLRSKEELKLRFENLPHIGKKRAAMLLKQFGSIEAVGKNSAETIAAAAKISLQQASEV 650

Query: 604 YNHFHKN 610
                K 
Sbjct: 651 LEKITKE 657


>gi|303248016|ref|ZP_07334282.1| excinuclease ABC, C subunit [Desulfovibrio fructosovorans JJ]
 gi|302490573|gb|EFL50478.1| excinuclease ABC, C subunit [Desulfovibrio fructosovorans JJ]
          Length = 609

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/624 (26%), Positives = 250/624 (40%), Gaps = 51/624 (8%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLE 73
           M    G++LYVGKA NL+ R+ SY      H+ +   ++++I  +   +T +E EALLLE
Sbjct: 1   MKGGKGKILYVGKAKNLRARLSSYFRGEAGHSVKTAALVARIAAVEVLLTASEKEALLLE 60

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
           +++IK+ +PR+N++L+DDK++    +  +   P L   R  S    +YFGPF S  A   
Sbjct: 61  SSLIKKHRPRYNVVLKDDKNYILFKLDKRSPYPRLAFTRRVSRDGAAYFGPFTSAAAART 120

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
           T   L R F LR C D    +R RPCL   I +C  PC   +  E YM  VH  + FL+G
Sbjct: 121 TWKELGRVFALRKCGDKTLNNRIRPCLYHFIGQCLAPCVKAVDPETYMALVHRVEAFLTG 180

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---MDCFSLYHN 250
            +  + + + + M QA+ + D+E A   RD L A+        ++  R   MD       
Sbjct: 181 RSAEVLKSVQKEMEQASERLDFEEAARLRDLLFAMRRTVEGQATVLTRLVDMDVADFTVT 240

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310
            +   +   F   G+     TFF                L QFY  +      ++   + 
Sbjct: 241 DHGVGLCVLFVRQGRLLDRKTFFFPGIEAGEAVGAAGSALVQFYRPESFIPARVVVPPSL 300

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370
                              T    G+   + E           +        +  L +  
Sbjct: 301 APQTAVGFVADGEPEAADATGEASGDGAALAEILAE-RRGGPVRLGPPRGREERKLLELA 359

Query: 371 KKFALPHIP-----------------------KRIEIYDNSHIMGCSAVGCMVVVGENGF 407
              A                             RIE  D SH+ G      MVV      
Sbjct: 360 GANARRAAEEAVKAAERDVLPSLAGSFGLAALNRIEAVDVSHLGGKGVRVGMVVFEAGAP 419

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K+ YR +     +  + D  A+     +R                     S P WPD++
Sbjct: 420 KKSDYRAYAFPELEGTSDDYLALASFAAKR-------------------AASGPPWPDLL 460

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR---SAGMEKFFVKKGEALVLNMRD 524
           ++DGGKGQL A    L +        + SIAKG  R     G   +   +   L L    
Sbjct: 461 LVDGGKGQLEAVGRALTEAGAGGAFALASIAKGDTRSQNEMGDVIYVPGRKNPLALRPGS 520

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           P L F+QR+RD  H F+I   R+ R K    S + ++ G+GP   R L ++FG+V  +  
Sbjct: 521 PELLFLQRVRDTVHDFSIGRQRRARTKTGLQSAVLDLPGVGPKTARKLWEAFGSVAAMKA 580

Query: 584 SSPETLASIEGISKKIACKIYNHF 607
           +SP  LA   G+  K A K+ +  
Sbjct: 581 ASPADLALKAGLGPKQAAKLADSL 604


>gi|268679231|ref|YP_003303662.1| excinuclease ABC, C subunit [Sulfurospirillum deleyianum DSM 6946]
 gi|268617262|gb|ACZ11627.1| excinuclease ABC, C subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 599

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 198/626 (31%), Positives = 301/626 (48%), Gaps = 49/626 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             +  P+  G+YQ  + +G +LYVGKA NL  R+KSY         S   + RIT MI +
Sbjct: 5   KIKNAPKSAGIYQYFNASGALLYVGKAKNLHNRVKSYFRFSEQLSASPTLSARITKMIHE 64

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           + N+ + V  +E +AL+LE ++IK+LKP++NILLRDDK++PYI I      P     R  
Sbjct: 65  VENVEYIVVQSEHDALILENSLIKQLKPKYNILLRDDKTYPYIAINLADPFPRFEITRKI 124

Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
           +  +   YFGP +   + +  + +L   F L            + CL +QI RC  PC  
Sbjct: 125 TNDKNMKYFGPLS--GSAKALLEALYLAFPLVQKKG--CLKEKKACLFYQIGRCLAPCEA 180

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I +  Y + V +A + LS     L   +   M +A+LK ++E A   RD + ++    +
Sbjct: 181 KIETASYAKIVQQALESLS-EQKKLLHLLHVKMEEASLKLNFEEAAKLRDLMRSIKESLH 239

Query: 234 HNDSIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                 +     D F++   +  A I   F   G+   T   FL         ++    L
Sbjct: 240 VTHVELSTLENYDVFAIEIVEKTAVIMRLFIRAGKIVSTSHSFLHHVHGFDKEELYQRAL 299

Query: 291 RQFYT--DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
            +FY    +    +IL++E  EE   L +   +++  K+ I+ P++GEKR +I  A  NA
Sbjct: 300 FEFYQPMHQTFAHHILVAESFEEADALAVFLSEKFNQKITISTPQKGEKRHLISLAKENA 359

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
           H    Q ++ +  H  I +     F L  +PKRIEI+DNSH+ G S VG MVV  E  F+
Sbjct: 360 HLLLLQHITKQ--HTSITEQLHALFDLTALPKRIEIFDNSHLGGTSPVGAMVVWDEG-FL 416

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YR +      +  +D+ A MR +LERR +   K                 S PD+ +
Sbjct: 417 KASYRHY-----LLHHKDEYAQMREMLERRIADFKKE----------------SPPDLWL 455

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRD 524
           LDGGK     A G+LK+  +   +  I+     AK  +           K  AL L   D
Sbjct: 456 LDGGKTLRQLALGLLKEARISLDVLAIAKEKIDAKAHRAKGSAHDLVYGKSSALKLAPAD 515

Query: 525 PILYFIQRLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             L F+Q+LRDEAHRFAI+ H +K+R K     L  I G+G    + L+  FGT + I  
Sbjct: 516 KRLQFLQKLRDEAHRFAISFHQKKKRSKDLSMELLSIEGMGQATLKKLVSYFGTFEAIYA 575

Query: 584 SSPETLASIEGISKKIACKIYNHFHK 609
           ++ E L     I KK+  K++   +K
Sbjct: 576 ATQEELE--VTIGKKMGEKLFQSLNK 599


>gi|170288481|ref|YP_001738719.1| excinuclease ABC, C subunit [Thermotoga sp. RQ2]
 gi|229557873|sp|B1L9N8|UVRC_THESQ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|170175984|gb|ACB09036.1| excinuclease ABC, C subunit [Thermotoga sp. RQ2]
          Length = 557

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/601 (26%), Positives = 280/601 (46%), Gaps = 58/601 (9%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           E PGVY   +  G  +Y+GKA  L  R++SY+  N  T ++  ++ + + +   V   E 
Sbjct: 14  EEPGVYIFKNK-GVPIYIGKAKRLSSRLRSYL--NPQTEKVFRIVEEADELETIVVMNER 70

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
           EA +LEAN+IK+ +P++N+ L+D   +PYI I+D   IP +   +       +YFGP+ S
Sbjct: 71  EAFILEANLIKKYRPKYNVRLKDTNFYPYIRISDDE-IPYVEIVKRKLRDG-TYFGPYTS 128

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
           V  V   +  LQ+    R+C  S  +   RPC L+ + RC GPC G  + E + E + + 
Sbjct: 129 VQFVRNLLEILQKIMGFRTCK-SDLKRIKRPCFLYHLGRCIGPCIG--NIESHEEAIRKL 185

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
           ++FLSG    + + +   M   +   D+E+A  +RD L  LS++      ++       +
Sbjct: 186 REFLSGNMEEVFDYLKEKMETHSKMLDFENAAKYRDLLLNLSNVLESQGVVFEENINCDV 245

Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSE 307
             + +           G   G  +F ++  S     +      R        P+ ++L  
Sbjct: 246 LVHAHDL-FVVLRVRNGYLVGKISFEMEGGSVEDFIREYYISGRG-----DIPKTLILES 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK 367
           + +E             Y           +    E  L  A ++   +L      +  L+
Sbjct: 300 DLDEMD-----------YSSLGFEYVGPPRSTTEEDLLEKAKKNLENELKMRGLRKEALE 348

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           +  K   +   P RIE  D SH+ G   V  +VV  +    K+ YR++ +  +     DD
Sbjct: 349 ELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKSDYRRYKIEQDH---PDD 405

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
              +R V++RR+S+                      P+++ +DGG GQ++AA   LK++ 
Sbjct: 406 YESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAIEALKEIG 446

Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547
            +    ++ +AK  +         V +   + L    P+L  + ++RDE HRFA++ HRK
Sbjct: 447 KDC--PVVGLAKKEET-------VVFENREIHLPHDHPVLRLLVQIRDETHRFAVSYHRK 497

Query: 548 RRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           RR+K +  S LD + GIGP+RK+ L++ FG+++ I  +S E +A + G S +IA ++ + 
Sbjct: 498 RREKESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG-STEIARRVLDI 556

Query: 607 F 607
            
Sbjct: 557 L 557


>gi|257458985|ref|ZP_05624104.1| excinuclease ABC, C subunit [Campylobacter gracilis RM3268]
 gi|257443370|gb|EEV18494.1| excinuclease ABC, C subunit [Campylobacter gracilis RM3268]
          Length = 600

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 179/625 (28%), Positives = 282/625 (45%), Gaps = 52/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P  PGVYQ  D AG++LYVGKA  L+ R+KSY         S   + RI  MIS+
Sbjct: 5   EIKSLPAAPGVYQYFDAAGKLLYVGKAKILKNRVKSYFSFTPALAPSPRLSARIAKMISE 64

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
             ++ + VT +E +AL+LE + IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 65  AAHLEYIVTPSESDALILENSFIKQLKPKYNILLRDDKTYPYIYVNLDDDFPRFEITRKI 124

Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
              +   YFGP+      ++ + +L   F L    + V     + CL  QI RC+ PC  
Sbjct: 125 VKGKNIRYFGPYFHG--AKEILQTLYMQFPLVQKKNCV--KGKKACLFHQIGRCAAPCED 180

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +IS + Y   V  A   L      + + +   M +    E++E A   RD++  L  +  
Sbjct: 181 KISKQDYARIVQSALAALKNPQKMVPQ-LQDRMARLAQSENFEEAAQIRDKIEILKQMNV 239

Query: 234 HNDSIYNRMDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD---SESTNAQILS 287
             +    ++D    F++     L C        G+   + +  +      ++        
Sbjct: 240 KVEVDLAKLDDFEVFAIAARDGLVCAVHFSIREGKISASSSHIINCKAPSADDIANAYKQ 299

Query: 288 YFLRQFYTDKPC-PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
             L  F    P     I + +E +++ L+     K++    KI  PK GEKRKI E A  
Sbjct: 300 MILSAFPAAAPVACAKIYVYDEFDDSDLVCEILSKRHERAFKIYAPKIGEKRKICEIAYQ 359

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           N   +  + L  +      L++    F L ++P  IE++DNSH+ G +AVG M+   +  
Sbjct: 360 NCEINIKKHL--KTHDYAFLQELKDYFNLTNLPVNIEVFDNSHMFGAAAVGAMISFQDGE 417

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           F K  YR        + + +D   MR  L    S+ +K +E              + PD+
Sbjct: 418 FNKQNYRH-----KHLSSNNDYDQMREYLT---SRALKFDE-------------LAAPDL 456

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGG   L+ A+ ++  +     I  IS     AK  +     +     K     L  
Sbjct: 457 WLIDGGTALLNLAEEIICSVGANVDIIAISKEKIDAKAHRAKGAAKDKICTKSGIFSLPT 516

Query: 523 RDPILYFIQRLRDEAHRFAITTHRK-RRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F QRLRDEAHRFAI+ H+K +RK     S L  + G+     + LL  +G  + 
Sbjct: 517 DDKKLQFFQRLRDEAHRFAISFHQKSKRKLDLQSSKLLSL-GVSKGSLKKLLDFYGDFES 575

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I  +S + + S+  I  + A KI N
Sbjct: 576 IYTASFDEIRSLTNI--QTAEKILN 598


>gi|291288234|ref|YP_003505050.1| excinuclease ABC, C subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290885394|gb|ADD69094.1| excinuclease ABC, C subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 599

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 185/615 (30%), Positives = 287/615 (46%), Gaps = 42/615 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFT 61
            +++PE PG+Y  L   G +LYVGKA NL+ R+ SY     +   R   M+    +IRF 
Sbjct: 6   LKEIPENPGIYLYLGKNGEILYVGKAKNLRNRVSSYFVDFESKPIRTRKMLQSARDIRFV 65

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +E EALLLE N+IK  KPR+N+ L+D KS+P+ILIT +   P L   R+S      Y
Sbjct: 66  VTTSEAEALLLENNVIKTEKPRYNVRLKDSKSYPFILIT-EEDYPKLRITRESGKKG-EY 123

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF  V ++   ++ L + F LRSC DS FR   + CL FQI++C GPC   IS  +Y 
Sbjct: 124 FGPFVDVGSLRSIVDELLKVFPLRSCGDSKFRE-GKLCLKFQIRKCLGPCENMISKNRYN 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---- 237
           + V + ++F  G    +K  + + M + +   ++E A I RDRL  LS +          
Sbjct: 183 QLVEQIREFFRGNVDTVKSHMEQEMMRLSDDMNFEEAAIMRDRLRGLSRLFTKQTVVMPD 242

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
             + +D F  +  +N++ I   F   G+  G+ T  L+   +   + ++  F+ Q Y+  
Sbjct: 243 DTSSIDVFVPHSFENVSGITAMFIRGGRLIGSRTEILE--DDENPSGVIESFVLQMYSVL 300

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
                ++     E++  L+ +  K    K++          K+   AL N        L+
Sbjct: 301 RNYPQMVYIAGLEDSGSLQEALEKLADKKLRFRKRGYAAVEKL---ALDNGRVQTQLYLN 357

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                + I +   K      +  RIE  D SH+ G   VG  +V  +  F K QYRK+ +
Sbjct: 358 KLSKRKDITEKLKKIIGAESVS-RIECVDISHLGGSGTVGVSIVAVDGEFSKAQYRKYRI 416

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
              +    DD   +  +  R+F  + +  E                 D+ I+DGG GQL+
Sbjct: 417 RTAE---NDDFISIYELFSRKFENIQEGSE--------------PPADLYIVDGGIGQLN 459

Query: 478 AAQGVLKKLNVENRITIISIAKG-------PKRSAGMEKFF-VKKGEALVLNMRDPILYF 529
           +A     +         ISI+KG        K+   +E      +   L L   DP+L F
Sbjct: 460 SAMRAASEKGYTANF--ISISKGRSIKFMKDKQEQSIESVHIPGRKNPLNLKKNDPLLLF 517

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           IQ++RDE+HRFAI   RK   K    SPL  + G+G    R +L+ F  +      + + 
Sbjct: 518 IQKVRDESHRFAIDYSRKLALKNFKKSPLLMLEGVGEKTVRKVLEVFPDIYERKDLTAKD 577

Query: 589 LASIEGISKKIACKI 603
           ++    I +K A  I
Sbjct: 578 ISEYCSIPEKTAAVI 592


>gi|124485758|ref|YP_001030374.1| excinuclease ABC subunit C [Methanocorpusculum labreanum Z]
 gi|124363299|gb|ABN07107.1| Excinuclease ABC subunit C [Methanocorpusculum labreanum Z]
          Length = 520

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/552 (28%), Positives = 267/552 (48%), Gaps = 44/552 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PG Y   +  G ++YVGKA +L+KR+ SY    +H  +   +++ I ++ + +T 
Sbjct: 8   DIPHSPGCYLYKNSEGTIIYVGKAKDLRKRVSSYFQKKDHDPKTQKLVAAIRSVEYIITA 67

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           T+ EA LLE  +IK   P++NI L+D KS+ YI +T K   P +   R+ +   G +FGP
Sbjct: 68  TDEEAYLLENTLIKHHLPKYNIDLKDAKSYAYIELT-KEPYPRITIARN-TRGNGQFFGP 125

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S    +  ++ +++TF LRSC +     + RPCL + I  C+GPC   +S ++Y +  
Sbjct: 126 FVSAKERDYVLSVVKKTFRLRSCKNMP---KNRPCLRYHIGNCTGPCGAHVSVDEYAKQC 182

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNR 241
             A + L G    +  K+   M + +   ++E+A++ RD + A+ ++ +         + 
Sbjct: 183 SYAAEVLKGSTKEITAKLEEEMAEYSKDMEFEAALLCRDMITAVENLSSRQYVARKTDHD 242

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D  +         +     + G   G      +   ++++     +  R +  + P P+
Sbjct: 243 EDVIAYRVVDGTVYLMVFHVYKGTLGGRD----EFIFDASDGFFEEFVARYYTDENPAPK 298

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I++ EE +    L        G+ VKITVPKQG K+K++E A  N    H         
Sbjct: 299 EIIVEEELD--EALAAYLGTLAGHVVKITVPKQGAKKKLLELAGKNIETVHFGDEIK--- 353

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               + +      L   P  IE +D SH+ G   V  MV        K  YR+F +    
Sbjct: 354 ----VMELQAALHLKTPPNVIECFDISHLSGTDTVASMVQFRAGRPDKRNYRRFKIKT-- 407

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           V   DD A M  V+ RR+S+LI+ E+ L              PD++++DGGKGQLS+A+ 
Sbjct: 408 VDGIDDFASMAEVVHRRYSRLIEEEKPL--------------PDLIVIDGGKGQLSSAKR 453

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           ++ +L+ +  I +IS+AK  +     E F       L    +     ++Q +RDEAHRFA
Sbjct: 454 IIDELDAD--IPLISLAKAEE-----EVFVSGVPFPLPFGKKTKANMYLQEIRDEAHRFA 506

Query: 542 ITTHRKRRKKAA 553
           +T +R  RKK  
Sbjct: 507 VTYNRLLRKKRL 518


>gi|289450502|ref|YP_003475302.1| excinuclease ABC subunit C [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289185049|gb|ADC91474.1| excinuclease ABC, C subunit [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 650

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 180/668 (26%), Positives = 297/668 (44%), Gaps = 90/668 (13%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFT 61
            + +PECPGVY M D  G+++Y+GKA NL++R++SY  +N   T ++  MIS I +  F 
Sbjct: 8   LDLVPECPGVYLMKDATGQIIYIGKAINLRRRLRSYFGANPQGTLKVLTMISHIRDFDFI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STIQ 118
           +   E+EALLLE+N+IK+ +P +N+LL+D+  +PY+ I+ +   P +YK           
Sbjct: 68  ICANELEALLLESNLIKKYQPFYNVLLKDNHDYPYLCISWQEPYPRIYKAYRIGNDIKRG 127

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEIS 176
             Y+GP+ + D       ++   F L++C  +  R   + RPCL + IKRC GPC G +S
Sbjct: 128 AKYYGPYLNGDLNRALA-AIHALFPLKTCNRTFPRDIGKERPCLNYHIKRCIGPCLGSVS 186

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           + +Y   V +   +L G    L  +I ++M +A    D+E A + RDRL+ L  +     
Sbjct: 187 ATQYRAVVRQVADYLEGKYPKLLAEIEKSMKEAADNLDFERAAVLRDRLSGLKALIARAQ 246

Query: 237 ----SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILS----- 287
               S    MD ++        CIQ     FG+  GT TFFL+        +        
Sbjct: 247 RVTVSGQKSMDVYATAREGGEICIQKLQVRFGKITGTGTFFLQDPQPVGMGEDRGQTLLF 306

Query: 288 YFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQY-----GYKVKITVPKQGEKRKIIE 342
            F+ Q Y +      +++         +E   FK++     G ++++ +PK+G K ++ +
Sbjct: 307 DFILQDYLNNTGETEMIVLPPYINVDSVEWDNFKRWLFSAAGREIQLCLPKKGHKYELWQ 366

Query: 343 QALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGC 398
            A + A +      + E   +       +   +   L    KRIE YD S+      V  
Sbjct: 367 MAEMTAEKVINHHAAVENKRKIQTETAWQYLAELCGLKGQLKRIEAYDVSNNGSQDIVCA 426

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY 458
           M V       K  YR FNL  +     DD A M   L RR                  + 
Sbjct: 427 MTVFENGLANKKAYRDFNL--SYQTEIDDYAAMAETLRRRIKHF-------------DDS 471

Query: 459 SFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEAL 518
           +F + P ++++DGG G +   QGVL +  V+++I +  + K  +         + +G+ L
Sbjct: 472 NFGAEPQLILVDGGLGHVHTVQGVLAE--VKSKIKVAGMVKDDRHRTRG--LVLPEGQVL 527

Query: 519 VLNMR----------------DPI---------LYFIQRLRDEAH-----------RFAI 542
            L                               L  +  ++DE H           R   
Sbjct: 528 ELAKSVKTTHAGVLPSVSGDYHEADKEYRQAVLLKLLTEIQDETHRRAIRANRNRSR--- 584

Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
              R+ R K     L+ + GIGP R+ LLL  FG++K I+ +    L +  G+   +A K
Sbjct: 585 --DRQLRYK-----LEAVPGIGPKRRALLLDKFGSLKDIAAAPVSELVAKTGLPTDVAHK 637

Query: 603 IYNHFHKN 610
           I+  FH++
Sbjct: 638 IFAFFHQD 645


>gi|167471073|ref|ZP_02335777.1| UvrABC system, C protein [Yersinia pestis FV-1]
          Length = 519

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 178/528 (33%), Positives = 280/528 (53%), Gaps = 30/528 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D AG V+YVGKA +L+KR+ SY  +     +   ++  I  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y 
Sbjct: 130 GPFPNSYAVRETLALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V   + FLSG +  +  ++   M +A+ +  +E A   RD++ A+  +        + 
Sbjct: 190 RQVDYVRLFLSGKDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDS 249

Query: 242 M--DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----T 295
              D   +  +  LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY     
Sbjct: 250 EDLDVIGVAFDAGLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQ 309

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     E  LL  S  +  G K++I    +G++ + ++ A  NA  +   +
Sbjct: 310 GRTLPGEILLDFTLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTALITR 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    +K+  K   L     R+E +D SH MG   V   VV   NG V+++YR++
Sbjct: 370 LSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+  + +   DD A M  VL+RR+ + + +++                PDV+  DGGKGQ
Sbjct: 429 NI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFSDGGKGQ 471

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALV 519
           LS A  V   LNV   + +  ++ +AKG  R  G+E  F+  +GE + 
Sbjct: 472 LSQAFDVFASLNVPWDQQKPLLVGVAKGSDRGTGLETLFLASEGEGIP 519


>gi|219852419|ref|YP_002466851.1| excinuclease ABC subunit C [Methanosphaerula palustris E1-9c]
 gi|219546678|gb|ACL17128.1| excinuclease ABC, C subunit [Methanosphaerula palustris E1-9c]
          Length = 521

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/554 (29%), Positives = 266/554 (48%), Gaps = 46/554 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +P  PG Y   D+ G V+YVGKA NL++R+ SY   ++   +   ++S I +I+F
Sbjct: 7   VDLNTLPTAPGCYLYHDVDGTVIYVGKAKNLKRRVSSYFQRHDLDPKTEALVSHIASIQF 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  EVEALLLE N+IKR  P++NI L+D K++ YI +    + P     RD     G+
Sbjct: 67  IVTNNEVEALLLENNLIKRHWPKYNISLKDSKTYAYI-LRTDEEFPRFVVARD-RDQPGT 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF S    +  + +L+  F +RSC     R + R CL + ++ C GPC G IS E+Y
Sbjct: 125 YFGPFTSGLERDYLLRALKHAFLIRSCR----RLQKRACLRYHMQSCLGPCVGAISREEY 180

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238
            + V  A+  LSG   +L   +   M   +  E++E A++ RD++ A+  +Q H      
Sbjct: 181 AKQVCRAEAVLSGKGDDLIAALKEEMAARSEAEEFEQALVIRDQIQAIERLQEHQRVQRQ 240

Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +         +     + G       +         +  ++      +Y D 
Sbjct: 241 KNYDEDVINYLVVDGTVYLALFNIYRGTLGQKEEYVFPFHQGFLDEFLVQ-----YYADH 295

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
           P P+ +L+  E + +  +     +  G KV +TVP++G+++ +++    N          
Sbjct: 296 PVPKEVLVPHEVDGS--IAEFLGEMKGQKVGVTVPQRGDRKNLLDLVKTNIETQFFGDRI 353

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                   +++  K   LP  P  IE +D SH+ G + VG MV   +    +  YRKF +
Sbjct: 354 K-------VEELKKALHLPTSPGVIECFDISHLSGTAMVGVMVQFRDGRPDRKNYRKFRI 406

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V+  DD   +  V+ RR+S+L + ++                PD++++DGGKGQL 
Sbjct: 407 RT--VEGIDDFRAIAEVVRRRYSRLQREQK--------------RMPDLIVVDGGKGQLH 450

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA   L  L +  ++ +I++AK  +     E F       + L+ R     F+Q++RDE 
Sbjct: 451 AAADELASLGL--KVPLIALAKREE-----EVFMPGLSLPMPLDRRSKASLFLQQIRDET 503

Query: 538 HRFAITTHRKRRKK 551
           HR AIT +R  R+K
Sbjct: 504 HRSAITYNRTLRRK 517


>gi|34557927|ref|NP_907742.1| excinuclease ABC subunit C [Wolinella succinogenes DSM 1740]
 gi|81653452|sp|Q7M8K0|UVRC_WOLSU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|34483645|emb|CAE10642.1| EXCINUCLEASE ABC SUBUNIT C [Wolinella succinogenes]
          Length = 602

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 182/624 (29%), Positives = 281/624 (45%), Gaps = 53/624 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQI 55
            + +P+  GVY   D   ++LYVGKA +L+KR+KSY         S   + RI  MIS+ 
Sbjct: 10  LQNLPDQSGVYHYFDSRSKLLYVGKAKSLKKRVKSYFQFTPTLAPSPKLSPRIHKMISEA 69

Query: 56  NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS- 114
             IR+ V   E +AL+LE ++IK+LKP++NILLRDDK++PYI   +    P L   R   
Sbjct: 70  AFIRYIVVENEHDALILENSLIKQLKPKYNILLRDDKTYPYIYFDENESFPRLEITRKIL 129

Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
                 YFGP+ +                L            + CL +QI RC  PC  +
Sbjct: 130 PHKGVRYFGPYTTG----ARELLESLYELLPLVQKKGCLKAQKACLFYQIHRCLAPCESK 185

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           IS E+Y E   EA   L   +  +   +   M +      +E A   RDR+  +  I+  
Sbjct: 186 ISKERYGEIFKEALGLLQNHSKLISR-LKERMEKLAENLRFEEAGELRDRIEKIKRIEAF 244

Query: 235 NDS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291
           +         +D  ++  +   + +   F   G+   + +  LK        +     + 
Sbjct: 245 SGIDLARLEDLDILAIATSGKHSMLTRLFMREGKVVSSTSTPLKAQEGLDEEEAYRRAIL 304

Query: 292 QFYTDKP--CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
            +Y       P+ ILL  E E    LE      +G K+ +  PKQG K+ +I+ AL NA 
Sbjct: 305 HYYDSFMPLPPKQILLPLELESKRELEAHLEGLFGRKIPLHHPKQGSKKALIDLALKNAE 364

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                +L  E     +L+   +   L  +P+RIE +D SH+ G + VG MVV  E    +
Sbjct: 365 E--LLRLEGEKEEIPLLESLQELLGLESLPRRIEAFDTSHLRGEACVGAMVVYEEGFCKE 422

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           +  R        ++ +D+ + MR +L R                + + +   S PD+ +L
Sbjct: 423 SYRRY------ALEGRDEYSQMREMLGR----------------RAEAFDRESPPDLWLL 460

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEK-FFVKKGEALVLNMR 523
           DGG GQ+  AQ +++ L     + II+IAK        R+ G  K       E + L   
Sbjct: 461 DGGLGQIRLAQEIIESLG--ANVEIIAIAKEKIDAKAHRAKGAAKDILRTPTEEIRLLPS 518

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
           D  L  +Q++RDE HRFAIT HR+++ KK     L EI GI   + + LL  FG+ + I 
Sbjct: 519 DKRLQLLQKIRDEVHRFAITYHRQQKLKKDRQIDLLEIKGIKKGKLKRLLDFFGSFEAIR 578

Query: 583 RSSPETLASIEGISKKIACKIYNH 606
            +S E L  +  +S+  A  I   
Sbjct: 579 EASFEELCKV--VSEGEARAILEA 600


>gi|15643035|ref|NP_228078.1| excinuclease ABC subunit C [Thermotoga maritima MSB8]
 gi|8134799|sp|Q9WYA3|UVRC_THEMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|4980761|gb|AAD35353.1|AE001708_21 excinuclease ABC, subunit C [Thermotoga maritima MSB8]
          Length = 557

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/602 (26%), Positives = 279/602 (46%), Gaps = 58/602 (9%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           PE PGVY   +  G  +Y+GKA  L  R++SY+  N  T ++  +  + + +   V   E
Sbjct: 13  PEEPGVYIFKNK-GVPIYIGKAKRLSNRLRSYL--NPQTEKVFRIGEEADELETIVVMNE 69

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EA +LEAN+IK+ +P++N+ L+D   +PYI I+D   IP +   +       +YFGP+ 
Sbjct: 70  REAFILEANLIKKYRPKYNVRLKDTDFYPYIRISDDE-IPYVEIVKRKLWDG-TYFGPYT 127

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           SV  V   +  LQ+    R+C  S  +   RPC L+ + RC GPC G  + E + E + +
Sbjct: 128 SVQFVRNLLEILQKIMGFRTCK-SDLKRIKRPCFLYHLGRCIGPCIG--NIESHEEAIRK 184

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246
            ++FLSG    + + +   M   +   D+E+A  +RD L  LS++      ++       
Sbjct: 185 LREFLSGNMEEVFDYLKEKMETHSKMLDFENAAKYRDLLLNLSNVLESQGVVFEENINCD 244

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           +  + +           G   G  +F ++  +     +      R        P+ ++L 
Sbjct: 245 VLVHAHDL-FVVLRVRNGYLVGKISFEMEGGNVEDFIREYYISGRG-----DIPKTLILE 298

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            + +E             Y           +    E  L  A ++   +L      +  L
Sbjct: 299 SDLDEMD-----------YSSLGFEYVGPPRSTTEEDLLEKAKKNLENELKMRGLRKEAL 347

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           ++  K   +   P RIE  D SH+ G   V  +VV  +    K  YR++ +  +     D
Sbjct: 348 EELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKGDYRRYKIEQDH---PD 404

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D   +R V++RR+S+                      P+++ +DGG GQ++AA   LK++
Sbjct: 405 DYESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAIEALKEI 445

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
             +    ++ +AK  +         V +   + L    P+L  + ++RDE HRFA++ HR
Sbjct: 446 GKDC--PVVGLAKKEET-------VVFENREIHLPHDHPVLRLLVQIRDETHRFAVSYHR 496

Query: 547 KRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KRR+K +  S LD + GIGP+RK+ L++ FG+++ I  +S E +A + G S +IA ++ +
Sbjct: 497 KRREKESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG-STEIARRVLD 555

Query: 606 HF 607
             
Sbjct: 556 IL 557


>gi|188996038|ref|YP_001930289.1| excinuclease ABC, C subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931105|gb|ACD65735.1| excinuclease ABC, C subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 576

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/605 (27%), Positives = 278/605 (45%), Gaps = 44/605 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           + PE PGVY   D   + +Y+GKA N++ R+K++        +   +  + ++I + +T 
Sbjct: 14  KAPEEPGVYLFKDSKKQYVYIGKAVNIKNRLKNHYQQLKVDPKERKIFKESSSIEWIITK 73

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           ++ EA +LE  +IK+ KP++N+ L+   S+P ++IT   + P +   R    I+G YFGP
Sbjct: 74  SDYEAFVLENELIKQYKPKYNVRLKSGSSYPMLVIT-DEEYPTVKISRKFGEIKGEYFGP 132

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F            + + F LR+C       R+  C  + +  CSGPC  +IS ++Y E  
Sbjct: 133 FLPARTARAMKELIHKLFKLRTC--DPLPKRSLVCFDYHLGLCSGPCADKISMKEYKEDA 190

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC 244
             AK FLSG   N+  ++   +N  T K  +E A + RD++ A+       + I   ++ 
Sbjct: 191 KVAKAFLSGNVKNVIYELYDKVNDYTNKLMFEKAAVIRDQIKAIEMTIKKQEVIGVGVEE 250

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
             +++              G            + E       +     +  D   P+ I+
Sbjct: 251 ADIFYFSRSRAYLIIVR--GNRIVGKDELKVQNEEFEEGNETAIITDYYSKDTYIPKTII 308

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
            +++ E+   L+    K    +V+I      +    I++ +              I +  
Sbjct: 309 TNKDLEDLENLKQWLLKAKNKEVEILTFLPEQVEGFIKRNIN-------------IENIE 355

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            LK   +K     +P R+E +D SH+ G   VG  VV       K +YR+F +    V  
Sbjct: 356 NLKSEFEKVFGFSLPNRVECFDISHLDGKFTVGSCVVWENGSMNKKEYRRFRVRT--VNY 413

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A +R VL RRF +  + +                 P++V++DGGKGQLS    V +
Sbjct: 414 IDDFASLREVLTRRFRRYKEMDNP---------------PELVLIDGGKGQLSQGLAVRQ 458

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L +EN + + SIAK        E  +   G+ + L     +L F  ++RDEAHRFAIT 
Sbjct: 459 ELGLEN-LRVFSIAKKE------EIIYTDDGKEVRLFENQELLKFFTKIRDEAHRFAITY 511

Query: 545 HRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +RK R+K    S LD I GIG  RK +L +++ T+  I ++S E L  + GI   ++ KI
Sbjct: 512 NRKLREKEGLKSVLDNIEGIGEKRKEILYRTYKTLDNILKASDEELKKL-GIPTSVSQKI 570

Query: 604 YNHFH 608
             +  
Sbjct: 571 KEYLK 575


>gi|254707069|ref|ZP_05168897.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10]
 gi|261314538|ref|ZP_05953735.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10]
 gi|261303564|gb|EEY07061.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10]
          Length = 525

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 230/445 (51%), Positives = 307/445 (68%), Gaps = 3/445 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI +   + F VT
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRETVTMEFVVT 140

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+L+RDDKSFPYIL+T  H+ P ++KHR + + +G YFG
Sbjct: 141 RTETEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGGHRAPGIFKHRGARSRKGDYFG 200

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TIN+LQR F LR+C DSVF  RTRPCLL+QIKRCS PCT EIS E Y   
Sbjct: 201 PFASAGAVGRTINALQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTYEISDEDYAGL 260

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           V EAK FLSG + ++K+ +A  M  A+   D+E A ++RDRLAALSH+Q+H         
Sbjct: 261 VAEAKAFLSGKSQSVKDHLAAAMQAASADLDFEHAAVYRDRLAALSHVQSHQGINPQTVE 320

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F+++    + CIQ  FF  GQN G   +F K DS    A++L  FL QFY DKPCP
Sbjct: 321 EADVFAIHQEGGMTCIQVFFFRTGQNWGNRAYFPKADSSLGPAEVLGAFLSQFYDDKPCP 380

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +LLSE  EE SL+  +   + G+KV+++VP++GEK+++++ AL NA  +  ++L+   
Sbjct: 381 KLVLLSETVEEQSLITEALSTRAGHKVQVSVPQRGEKKELVQHALTNAREALGRRLAETS 440

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           S   +L+   + F LP  P+RIE+YDNSHIMG +AVG M+V G  GFVKNQYRKFN+   
Sbjct: 441 SQARLLQGLAETFGLPRAPRRIEVYDNSHIMGTNAVGGMIVAGPEGFVKNQYRKFNIRST 500

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKN 445
           D+   DD  MMR V+ERRFS+L+K 
Sbjct: 501 DITPGDDFGMMREVIERRFSRLVKE 525


>gi|126179268|ref|YP_001047233.1| excinuclease ABC subunit C [Methanoculleus marisnigri JR1]
 gi|125862062|gb|ABN57251.1| Excinuclease ABC subunit C [Methanoculleus marisnigri JR1]
          Length = 516

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/553 (29%), Positives = 257/553 (46%), Gaps = 40/553 (7%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           + ++ +P  PG Y   D  G ++YVGKA NL++R+ SY   ++   +   +++ I  + F
Sbjct: 2   IDTQSLPTEPGCYLFSDSEGTIIYVGKAKNLRRRVSSYFSRHDLDPKTGRLVAAIAGLDF 61

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  EVEA +LE  +IK+ +P++NI L+D K + YI IT     P ++  R      G 
Sbjct: 62  IVTDNEVEAFILENTLIKKHQPKYNIDLKDAKRYAYIHIT-DEPYPRIHTARQP-DGNGR 119

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF S    E  +  L+  F LRSC     R   R      I  CS PCTG I  ++Y
Sbjct: 120 YYGPFVSAREREDLLRLLKSLFGLRSCRRLPRRPCLRA----HIGSCSAPCTGRIGEDEY 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V  A+  L G    L   +   M  +  +++YE A+  R+++ AL  ++       +
Sbjct: 176 RERVRRAEAVLKGDIAGLIRTLREEMAASAERQEYERAMELRNQITALEGLRERQHV--D 233

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
           R   ++      +A   T F              +  +       L  FL ++Y D   P
Sbjct: 234 RQKTYNEDIVNYIASEGTVFLMLFNVDRGTLAGKREYTFDETEGFLEEFLARYYADHEPP 293

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           E ++L    +    +        G KV++ VP++GEK+ +++    N   +         
Sbjct: 294 EEVILPVPVD--DAVAGYLSHLRGTKVRVVVPQRGEKKNLLDLVKKNVEIAFFGDRIK-- 349

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
                L +  +   LP +P  IE +D SH+ G + VG MV        K  YR+F +   
Sbjct: 350 -----LDELKRHLHLPDLPVAIECFDISHLSGTAMVGSMVRFLWGKPDKRNYRRFRIRT- 403

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            V+  DD A +  V+ RR+S+L K                  +PD++++DGGKGQL+AA 
Sbjct: 404 -VEGVDDFAAIAEVVRRRYSRLQKEG--------------GEFPDLILIDGGKGQLAAAT 448

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            VL+ L +  ++ I +IAK  +     E F       L L   +    F+Q +RDEAHRF
Sbjct: 449 AVLRDLGI--KVPIAAIAKREE-----EVFVPGFSHPLPLEKHEKASLFLQEIRDEAHRF 501

Query: 541 AITTHRKRRKKAA 553
           AIT HR  RKK  
Sbjct: 502 AITYHRTLRKKTV 514


>gi|20092138|ref|NP_618213.1| excinuclease ABC subunit C [Methanosarcina acetivorans C2A]
 gi|30173457|sp|Q8TKS2|UVRC_METAC RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|19917360|gb|AAM06693.1| excinuclease ABC, subunit C [Methanosarcina acetivorans C2A]
          Length = 516

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 183/556 (32%), Positives = 276/556 (49%), Gaps = 46/556 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  E +P  PG Y   D  G VLYVGKA +L+KR+ SY    +H  + T ++     + F
Sbjct: 2   IDLEALPHLPGCYLFKDEEGVVLYVGKAKDLKKRVSSYFQKRDHDPKTTSLVQAARGLDF 61

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TEVEALLLE  +IK+  PR+NILL+D K +  I +T   K P +   R ++     
Sbjct: 62  IVTNTEVEALLLENTLIKKHWPRYNILLKDSKRYACIHLT-GEKFPRIRIARKNTGDG-E 119

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           +FGPF S    +     +++TF LR+C     +  +R CL + I  CSGPC G IS E+Y
Sbjct: 120 FFGPFVSAKERDYIFEVVRKTFQLRTCK----KMPSRACLRYHIGACSGPCIGSISEEEY 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            E V  A   L G    L E + + M +   K+ +E A+  RD ++AL ++Q   +    
Sbjct: 176 GEKVKRATSVLKGNIGELIESMEKEMKKMAAKQMFEQAMALRDEISALEYLQEKQNMERQ 235

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
             +  D  +     N   +     + G       +      +      L  FL Q+Y++ 
Sbjct: 236 KKHDEDILNYIVRDNTVYLMLFKVYKGTLEDKQDYVFAFGED-----FLQEFLVQYYSEN 290

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             PE +++ +  EE+ +         G KVK+TVPKQGEK+++++ AL N          
Sbjct: 291 DPPEELIVPQVLEESLV--EFLAHVKGKKVKVTVPKQGEKKELLDLALKNVEIGFFGDRK 348

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                   L+    K +LP +P  IE +D SH+ G S VG MV        K+ YR+F  
Sbjct: 349 K-------LESLQSKLSLPKLPNVIECFDISHLSGTSTVGSMVQFRGGRPDKHNYRRF-- 399

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V+  DD A +  V+ RR+S+L++++                 PD++I+DGGKGQLS
Sbjct: 400 KIESVEGIDDFASIAEVVRRRYSRLLEDK--------------HEMPDLIIIDGGKGQLS 445

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           +A   L+KL +  R+ IISIAK  +     E +       L +   +    F+Q +RDEA
Sbjct: 446 SAFQELRKLKI--RVPIISIAKREE-----ELYVPGLKSPLPIKRNEKASLFVQEIRDEA 498

Query: 538 HRFAITTHRKRRKKAA 553
           HRFAIT +R  R+K+ 
Sbjct: 499 HRFAITYNRLLRQKSL 514


>gi|317051284|ref|YP_004112400.1| excinuclease ABC subunit C [Desulfurispirillum indicum S5]
 gi|316946368|gb|ADU65844.1| excinuclease ABC, C subunit [Desulfurispirillum indicum S5]
          Length = 604

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/626 (27%), Positives = 288/626 (46%), Gaps = 49/626 (7%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           EQ P+ PGVY M   A  +LYVGKA +L KR++SY+ ++    +I  M+S +  + +   
Sbjct: 8   EQAPDAPGVYTMYAGADTILYVGKAKSLIKRLRSYL-ASELPVKIARMVSLVERVEYVQV 66

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             E EA +LE  +IK+ +PR+N LLRDDK++P+I I  +H  P +   R        YFG
Sbjct: 67  FNENEAFILENTLIKQHQPRYNTLLRDDKTYPFIRIDFRHPYPRMTVVRKIKPDGARYFG 126

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PF     V +    L+  + LRSC+D+  + R++PC+  +I  C  PC   +      E 
Sbjct: 127 PFVHGSGVFRLFRLLEHIYKLRSCSDTELQKRSKPCIEHEIGNCLAPCVFSVKDTYQAEL 186

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           +     F  G +    +++   M +A    D+E A   RDRLA++  + N    +    +
Sbjct: 187 ME-LVDFFRGKSRATVQRMEDQMKRAAATLDFERAAEIRDRLASIHKVINAQMVLDCAGE 245

Query: 244 CFSLYHNK-----NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +Y+ +     +           G+  G+    L   S  T+A+ ++  LR++     
Sbjct: 246 NIDVYYLEKHPARDRYLASILIIRDGKLSGSYVKRLL--SCDTDAEAVAAILREYMAGLN 303

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ +++S         E         ++   VP++G+K + +E A +N  +   ++   
Sbjct: 304 APD-LIVSNLPLPQEEQEHYEAFLKHQRIDFRVPQRGKKVRYLELAQVNLEKHGDKQAQE 362

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E S  M      K   +         YD S   G   +G M V  +   + + YR F L 
Sbjct: 363 EASELMQRLGLAKLERME-------CYDISAFQGSYPIGSMSVWKDGELLPSAYRLFRLE 415

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DD  M+   L+RRF   + +E +               PD++++DGG  QL+ 
Sbjct: 416 G--FDQNDDYLMIARTLQRRFQGSLASESH---------------PDLILIDGGASQLNM 458

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAG-------MEKFFVKKGEALVLNMRDPILYFIQ 531
           AQ VL++L +   I +ISI+KG  R +         E     +   + +  R  +   +Q
Sbjct: 459 AQKVLEELALG--IAVISISKGRSRKSRGQESKHYDEIHIPGRKNPIAVRGRS-VYRVLQ 515

Query: 532 RLRDEAHRFAITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            LRDEAHRF IT H R R +++  S L  I GIGP   + +L +F + + I + + + L 
Sbjct: 516 HLRDEAHRFGITAHSRGRDRESLTSSLLAIPGIGPKSLQKILATFSSYEDILQ-NQQQLE 574

Query: 591 SIEGISKKIACKIYNHFHKN-TSHTP 615
           ++ G   ++A  +  +  ++    TP
Sbjct: 575 ALCG--DRVASALVQYLQQHAEPSTP 598


>gi|296272674|ref|YP_003655305.1| excinuclease ABC subunit C [Arcobacter nitrofigilis DSM 7299]
 gi|296096848|gb|ADG92798.1| excinuclease ABC, C subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 610

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 187/637 (29%), Positives = 309/637 (48%), Gaps = 60/637 (9%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             +Q+P   GVYQ  D  G +LYVGKA  L+ R+KSY         ++    RI  MI+Q
Sbjct: 6   KLKQLPNDAGVYQYFDKDGHLLYVGKAKVLKNRVKSYFKFTPELRPADKLGPRIYKMITQ 65

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           + +  + V   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P L   R  
Sbjct: 66  VESCEWIVVPNEHDALILENSLIKQLKPKYNILLRDDKTYPYIYVDLNEDFPRLEITRKV 125

Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGP++        ++S+  TF L      +       CL FQIK+C  PC  
Sbjct: 126 LKGSNIKYFGPYS--TGARDILDSIYETFPLVQKKACI--KGKEACLFFQIKKCLAPCEN 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS E+Y   ++++ +++   +  + + +   M + + +  +E A+  RDR+  +   + 
Sbjct: 182 RISKEEYANILNDSMEYIYNKSKLISK-LKVKMQEYSDEFRFEEAMKIRDRIKTIEKSEI 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD----SESTNAQIL 286
                    + +D F++ +  + A I   F   G+   +   FLK++     E    +  
Sbjct: 241 KTGMDLATNDNLDIFAIKNINSKAVIVRMFIRDGKLASSSHDFLKSNVEESEEFDFEEAY 300

Query: 287 SYFLRQFYTDK--PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
              +  +Y++     P+ IL+ +E  +   +E     ++  K+ I  PK G+KR I+  A
Sbjct: 301 KRAIINYYSNDIPIIPKEILIGDELTDIEDVEEFLKNKFTKKINIINPKVGKKRDIVGVA 360

Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
           L N       ++ +      + ++  + F L  +P R+E YDNSH+MG + VG MVV   
Sbjct: 361 LNNCDE--LLRIDSTKGTNTLYEEIKELFNLSQVPNRVESYDNSHMMGQATVGAMVVWDN 418

Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
           + F+K+ +R +NL        D+ + MR +L RR     KN                  P
Sbjct: 419 DKFLKSDFRHYNLE-----AHDEYSQMREMLIRRVESFEKN----------------PAP 457

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEA 517
           D+ I+DGG   L  A  +++ + V  ++ II++AK        R+ G   +    K+G  
Sbjct: 458 DLWIIDGGSTLLKLAYDIVESVGV--KLDIIAVAKEKIDFKAHRAKGAAKDIVHYKQGNE 515

Query: 518 L---VLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQ 573
                L   D  L+F+QR RDEAHRF I  H+K +R +     L  I GIG  + + LL 
Sbjct: 516 FKSVKLLTSDRRLHFVQRQRDEAHRFVINFHKKQKRAEDKQISLLNIKGIGEAKVKKLLL 575

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            FG+ + I  +S ETL  +  +++K +  I NHF++N
Sbjct: 576 YFGSFEKIKEASIETLKEV--LNEKDSILISNHFNQN 610


>gi|52548591|gb|AAU82440.1| excinuclease ABC subunit C [uncultured archaeon GZfos17F1]
          Length = 515

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 175/551 (31%), Positives = 279/551 (50%), Gaps = 46/551 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D A  ++YVGKA NL+KR+ SY   +    +   +I + +++ F VT +
Sbjct: 7   LPENPGCYLFKDAADNIIYVGKAKNLKKRVHSYFQRHERDPKTEVLIEKADSVDFIVTDS 66

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E+EAL+LE  +IKR +PR+NI L+D KS+ YI IT   + P +   R  S   GS+FGPF
Sbjct: 67  ELEALILENTLIKRHQPRYNIDLKDAKSYAYIQIT-DEEFPRIGIARR-SDGSGSFFGPF 124

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +    +  ++ +++TF +RSC     R   R CL + I  CS PC G+ISSE+Y + V 
Sbjct: 125 VTAKERDYILSVVKKTFKMRSCR----RLTKRACLRYHIGSCSAPCIGKISSEEYRKQVA 180

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YNRM 242
            A+  L G   +L   +++ M + ++++++E A+  RD++AA+ H+              
Sbjct: 181 RAQAHLRGNTSDLIRSLSQEMAEKSMEQEFEFAMELRDQIAAIEHLSERQYVDRQKNYDE 240

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +   +     +     + G       F           +++  FL Q+Y++   P  
Sbjct: 241 DVINYVKSDGKVYLMLFNVYKGMLADKQEFVF-----DEREEVIDEFLVQYYSEHDPPPE 295

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ++L  +   + ++     ++ G +V+IT+PK+GEK+K+++    N   S           
Sbjct: 296 LILPSQV--SDVIPDFLSERGGRRVRITIPKRGEKKKLLDLVGKNIEISFFGGQIK---- 349

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              L+       LP +P  IE +D SH+ G S V  MV        K  YR+F +    V
Sbjct: 350 ---LEALKDLLGLPRVPMVIECFDISHLSGTSMVASMVQYRSGKPDKRNYRRFKIKT--V 404

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           +  DD A +  V+ RR+S+L K +                +PD+VI+DGGKGQLSAA+G 
Sbjct: 405 EKIDDFAAIAEVVRRRYSRLKKED--------------GEFPDLVIIDGGKGQLSAARGE 450

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           ++ L +  RI IISIAK  +     E +       L  +       F+Q +RDEAHRFA+
Sbjct: 451 IEGLGL--RIPIISIAKREE-----EIYVPGLTHPLPADRNAKASLFVQEIRDEAHRFAV 503

Query: 543 TTHRKRRKKAA 553
             HR  R+KA 
Sbjct: 504 AYHRLLRRKAV 514


>gi|73670178|ref|YP_306193.1| excinuclease ABC subunit C [Methanosarcina barkeri str. Fusaro]
 gi|119367667|sp|Q468S9|UVRC_METBF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|72397340|gb|AAZ71613.1| Excinuclease ABC subunit C [Methanosarcina barkeri str. Fusaro]
          Length = 519

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/556 (33%), Positives = 276/556 (49%), Gaps = 46/556 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  E +P  PG Y   +  G V+YVGKA +L+KR+ SY     H  +   +I  +    F
Sbjct: 2   IDLEALPHLPGCYLFKNEEGTVIYVGKAKDLKKRVSSYFQKREHDPKTASLIEAVRGFDF 61

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TEVEA LLE  +IK+  PR+NILL+D K +  I +T + K P +   R      GS
Sbjct: 62  IVTNTEVEAFLLENTLIKKHWPRYNILLKDSKRYACIHLT-EEKFPRIRLSR-KKADNGS 119

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           +FGPF S    +     +++TF LR+C     +   R CL + I  CSGPC G IS+E Y
Sbjct: 120 FFGPFVSAKERDYIFEVVRKTFQLRTCK----KMPKRACLRYHIAACSGPCIGAISAEDY 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            E V +A   L G    L E + ++M +   ++ +E A+  RD +AAL ++Q   +    
Sbjct: 176 AEKVKKAASVLKGNIRELIESMEKDMRELASRQQFEQAMALRDEIAALEYLQEKQNMERQ 235

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
             +  D  +     +   +     + G       +             L  FL Q+Y++ 
Sbjct: 236 KKHNEDILNYIVRDDTVYLMLFKVYKGTLEDKQDYVFAFGEN-----FLEEFLVQYYSEN 290

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             PE ++L E  EE+ +         G KVK+TVPKQGEK+++++ AL N          
Sbjct: 291 EPPEELILPEPLEESLV--DFLSHVKGTKVKVTVPKQGEKKELLDLALKNVEIGFFGDRK 348

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                   L+    K +LP +P  IE +D SH+ G S VG MV        K+ YR+F  
Sbjct: 349 K-------LEALQSKLSLPKLPNVIECFDISHLSGTSTVGSMVQFRGGRPDKHNYRRF-- 399

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V+  DD A +  V+ RR+S+L++++ +L              PD++I+DGGKGQLS
Sbjct: 400 KIESVEGIDDFASIAEVVRRRYSRLLEDKHDL--------------PDLIIIDGGKGQLS 445

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           +A   L+KL V  R+ +ISIAK  +     E +       L +   +    F+Q +RDEA
Sbjct: 446 SAFQELRKLKV--RVPLISIAKREE-----EIYVPGIKSPLPIKKEEKASLFVQEIRDEA 498

Query: 538 HRFAITTHRKRRKKAA 553
           HRFAIT +R  R+K+ 
Sbjct: 499 HRFAITYNRLLRQKSM 514


>gi|15594802|ref|NP_212591.1| excinuclease ABC subunit C [Borrelia burgdorferi B31]
 gi|218249718|ref|YP_002374968.1| excinuclease ABC, C subunit [Borrelia burgdorferi ZS7]
 gi|226321767|ref|ZP_03797293.1| excinuclease ABC, C subunit [Borrelia burgdorferi Bol26]
 gi|8134793|sp|O51413|UVRC_BORBU RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|226695575|sp|B7J223|UVRC_BORBZ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|2688360|gb|AAC66813.1| excinuclease ABC, subunit C (uvrC) [Borrelia burgdorferi B31]
 gi|218164906|gb|ACK74967.1| excinuclease ABC, C subunit [Borrelia burgdorferi ZS7]
 gi|226232956|gb|EEH31709.1| excinuclease ABC, C subunit [Borrelia burgdorferi Bol26]
          Length = 603

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/605 (27%), Positives = 287/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ R+KSY    N +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     +  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            +AK  L+G    +  +I   +  A  KED+E+AI  ++   +L  I             
Sbjct: 188 DKAKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  YR + L+   
Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I N   L              P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDFKAIKEVISRRYSEIINNNLEL--------------PNLILIDGGKGQLNAALS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +I+GIG    + +L+S GT K I   S   ++    ++ ++A 
Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|221218148|ref|ZP_03589614.1| excinuclease ABC, C subunit [Borrelia burgdorferi 72a]
 gi|221192096|gb|EEE18317.1| excinuclease ABC, C subunit [Borrelia burgdorferi 72a]
          Length = 603

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/605 (27%), Positives = 286/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   +VLY+GKA NL+ R+KSY    N +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKVLYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     +  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            + K  L+G    +  +I   +  A  KED+E+AI  ++   +L  I             
Sbjct: 188 DKVKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  YR + L+   
Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I N   L              P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDFKAIKEVILRRYSEIINNNLEL--------------PNLILIDGGKGQLNAAIS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRMLQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +I+GIG    + +L+S GT K I   S   ++    ++ ++A 
Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|224532505|ref|ZP_03673130.1| excinuclease ABC, C subunit [Borrelia burgdorferi WI91-23]
 gi|224512577|gb|EEF82953.1| excinuclease ABC, C subunit [Borrelia burgdorferi WI91-23]
          Length = 603

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ R+KSY    N +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     +  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            +AK  L+G    +  +I   +  A  KED+E AI  ++   +L  I             
Sbjct: 188 DKAKSILNGNISEISSQIDIKLKHAIQKEDFEIAIKLKEIRNSLIEINQIQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  YR + L+   
Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I N                  P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDFRAIKEVISRRYSEIINNN--------------LELPNLILIDGGKGQLNAALS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +I+GIG    + +L+S GT K I   S   ++    ++ ++A 
Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|225549531|ref|ZP_03770497.1| excinuclease ABC, C subunit [Borrelia burgdorferi 118a]
 gi|225369808|gb|EEG99255.1| excinuclease ABC, C subunit [Borrelia burgdorferi 118a]
          Length = 603

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ R+KSY    N +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     +  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            + K  L+G    +  +I   +  A  KED+E+AI  ++   +L  I             
Sbjct: 188 DKVKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  YR + L+   
Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I N                  P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDFKAIKEVILRRYSEIINNN--------------LELPNLILIDGGKGQLNAAIS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRMLQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +I+GIG    + +L+S GT K I   S   ++    ++ ++A 
Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|216264711|ref|ZP_03436703.1| excinuclease ABC, C subunit [Borrelia burgdorferi 156a]
 gi|225548682|ref|ZP_03769729.1| excinuclease ABC, C subunit [Borrelia burgdorferi 94a]
 gi|215981184|gb|EEC21991.1| excinuclease ABC, C subunit [Borrelia burgdorferi 156a]
 gi|225370712|gb|EEH00148.1| excinuclease ABC, C subunit [Borrelia burgdorferi 94a]
          Length = 603

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/605 (27%), Positives = 287/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ R+KSY    N +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     +  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            +AK  L+G    +  +I   +  A  KED+E+AI  ++   +L  I             
Sbjct: 188 DKAKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  YR + L+   
Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I N   L              P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDFRAIKEVISRRYSEIINNNLEL--------------PNLILIDGGKGQLNAAIS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTSKKGINLPQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +I+GIG    + +L+S GT K I   S   ++    ++ ++A 
Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|226321090|ref|ZP_03796632.1| excinuclease ABC, C subunit [Borrelia burgdorferi 29805]
 gi|226233500|gb|EEH32239.1| excinuclease ABC, C subunit [Borrelia burgdorferi 29805]
          Length = 603

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/605 (27%), Positives = 286/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ R+KSY    N +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     +  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            +AK  L+G    +  +I   +  A  KED+E+AI  ++   +L  I             
Sbjct: 188 DKAKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETKEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  YR + L+   
Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I N                  P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDFKAIKEVISRRYSEIINNN--------------LELPNLILIDGGKGQLNAAIS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTSKKGINLPQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +I+GIG    + +L+S GT K I   S   ++    ++ ++A 
Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|223888985|ref|ZP_03623576.1| excinuclease ABC, C subunit [Borrelia burgdorferi 64b]
 gi|223885801|gb|EEF56900.1| excinuclease ABC, C subunit [Borrelia burgdorferi 64b]
          Length = 603

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/605 (27%), Positives = 287/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ R+KSY    N +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     +  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            +AK  L+G    +  +I   +  A  KED+E+AI  ++   +L  I             
Sbjct: 188 DKAKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  YR + L+   
Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I N   L              P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDFRAIKEVILRRYSEIINNNLEL--------------PNLILIDGGKGQLNAAIS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTSKKGINLPQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +I+GIG    + +L+S GT K I   S   ++    ++ ++A 
Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|313681456|ref|YP_004059194.1| excinuclease ABC subunit c [Sulfuricurvum kujiense DSM 16994]
 gi|313154316|gb|ADR32994.1| Excinuclease ABC subunit C [Sulfuricurvum kujiense DSM 16994]
          Length = 602

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 182/625 (29%), Positives = 287/625 (45%), Gaps = 49/625 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQINNI 58
           +P   G+YQ LD  GR+LY+GKA NL KR+KSY +           + RI  M+S+   +
Sbjct: 8   LPHQAGIYQYLDEKGRILYIGKAKNLSKRVKSYFNLTPSLSPKATLSLRIQKMLSETVGL 67

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            + +   E +AL+LE ++IK+LKP++NILLRDDK++PY+ +      P     R     +
Sbjct: 68  HYIIVENEHDALILENSLIKQLKPKYNILLRDDKTYPYLYVDMDETYPRFELTRKIIKGK 127

Query: 119 G-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              YFGPF+        ++SL     L            + CL +Q+++C  PC   I  
Sbjct: 128 SIRYFGPFS--VGARDILDSLYELLKLVQKK--SCLKGKKGCLFYQMEQCLAPCEFPIPH 183

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E Y+  V +  +++      + +++   M        +E A++ RDR+  ++  +  +  
Sbjct: 184 ETYLPMVTQGIEWIQNKRKLI-KQLEAKMEFYAESLRFEEALVLRDRIDRITKSELTSQI 242

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
                   D F++  N+  ACI   F   G+   +   F+      +  +     L  FY
Sbjct: 243 DLASTENYDVFAIALNEVRACILRLFIREGKVASSTHDFIPITPYFSIDEAYERTLIGFY 302

Query: 295 TDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH 352
            ++  P    IL +   E    ++    + +G K KI  P++G K+++I+ AL NA    
Sbjct: 303 GNEKPPIIAPILTAHPFESNDWVQEHLTELFGKKAKIETPQRGAKKELIDLALTNAKE-- 360

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
               + + +++ +L    +  AL  +P+RIE++DNSH  G + VG M+V     F K  Y
Sbjct: 361 -LLRTPQPTNEHLLHSIQELLALDSLPRRIEVFDNSHHGGSATVGAMIVYENGRFDKKAY 419

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           R ++LH      +D+   MR +L RR     KN                  PD+ +LDGG
Sbjct: 420 RTYHLHE-----RDEYGQMREMLTRRIEAFEKN----------------PPPDLWVLDGG 458

Query: 473 KGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
               S A  +L    +   +  IS     AK  +             E L L   D  L 
Sbjct: 459 ATLRSLATDLLGSHGIHLDVIAISKEKIDAKAHRAKGSARDILHFAEEPLRLESSDKRLQ 518

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           FIQ LRDEAHR AIT H+K + K    S L  I+GI   +   LL  FGT   I++S  +
Sbjct: 519 FIQMLRDEAHRSAITFHKKTKLKIDQTSKLLAIHGISTPKIHRLLDYFGTFDAIAKSDFK 578

Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612
           TL+ +  I  K A  I  ++  N S
Sbjct: 579 TLSEL--IGAKDAENIQKYYRGNIS 601


>gi|111073619|emb|CAL29482.1| excinuclease ABC subunit [Wolbachia endosymbiont of Onchocerca
           volvulus]
          Length = 550

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 201/553 (36%), Positives = 313/553 (56%), Gaps = 25/553 (4%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  GVY+M    G+VLYVGKA NL+ R+ +Y+   N + R+  M+SQI  I   +T  E+
Sbjct: 19  QSCGVYKMTGEKGKVLYVGKAKNLKLRLSNYLRFGNLSERVKVMLSQIVKIETFLTKNEI 78

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFGPFA 126
           EALLLE+ +IK LKP +NI L+D KS+PYI I+ KH  P++ +HR         Y+GPF 
Sbjct: 79  EALLLESRLIKSLKPTYNIKLKDGKSYPYITIS-KHDYPSIAQHRGKLKKGEFHYYGPFT 137

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S  AV++TI SLQ+ F LR C+D  F    RPC  + ++RCS PC G+I+ + Y +   +
Sbjct: 138 SATAVKQTILSLQKAFLLRGCSDKKFSSTKRPCFEYHVRRCSAPCVGKIAKDDYCQSAKQ 197

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIYNRMDC 244
           A+  L G N+ ++E++   M + + +++YE A ++RDR+  L  +Q      S     D 
Sbjct: 198 ARDTLLGRNNKVEEQLLSIMKKYSNEQNYELAAVYRDRIKLLKQVQMQPMDFSFEKDADF 257

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE-NI 303
           FS+   ++ ACI    F   +N G+ ++F +  ++  + +ILS FL  FY     P   I
Sbjct: 258 FSIARKEDSACINLLSFRNKENYGSTSYFAENCNDHPDDEILSTFLINFYNSVNVPPVQI 317

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
            + +      ++E +  K     +K+   K  ++R ++E    N+  S  ++L+      
Sbjct: 318 YIPDFITNRKIIEQALCKITHKSIKVLYTKSNKERDLLEFVFNNSQYSLERELTDCRDSL 377

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             L+  +K F+LP++PKRIE+YDNSHI G   +G MVV G+ GF+K++YRKF +      
Sbjct: 378 EKLEKLSKVFSLPNVPKRIEVYDNSHISGSHQIGVMVVAGQEGFLKSEYRKFTIKGE--I 435

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
           + DD  MMR VL +RFS  IK+                  PD +++DGG G +S  Q VL
Sbjct: 436 SGDDYKMMREVLTKRFSGKIKD----------------IIPDFLLIDGGPGHVSTVQNVL 479

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           + L ++  +  + +AKG  R+AG E+F++   E   L     ++ ++Q LR+EAHRFAI 
Sbjct: 480 QVLKID--VPFVCMAKGTYRNAGNERFYMLGKEEFTLENDSKVMLYLQLLRNEAHRFAIA 537

Query: 544 THRKRRKKAAYSP 556
           +HRK+R K   S 
Sbjct: 538 SHRKKRDKQFISS 550


>gi|78776619|ref|YP_392934.1| excinuclease ABC subunit C [Sulfurimonas denitrificans DSM 1251]
 gi|119367859|sp|Q30TI2|UVRC_SULDN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78497159|gb|ABB43699.1| Excinuclease ABC subunit C [Sulfurimonas denitrificans DSM 1251]
          Length = 600

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 185/621 (29%), Positives = 298/621 (47%), Gaps = 52/621 (8%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQIN 56
           +Q+P+  GVYQ  D  G +LY+GKA +L KR+KSY +       ++N + RI+ MISQ +
Sbjct: 8   KQLPDSAGVYQYFDKDGHLLYIGKAKSLAKRVKSYFNFAPKFKPNSNLSSRISKMISQTH 67

Query: 57  NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116
            +++ V  +E +AL+LE ++IK+L P++NILLRDDK++PYI I +  K P     R    
Sbjct: 68  TLQYIVVNSEHDALILENSLIKQLMPKYNILLRDDKTYPYIYIDNSQKYPRFEMTRKIIK 127

Query: 117 IQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
                Y+GPF+        ++S+     L     S+     + CL  QI RC GPC   +
Sbjct: 128 SSNIKYYGPFS--VGARDILDSIYELCALVQKKGSL--TSKKLCLYHQINRCLGPCELHV 183

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y   +  AK+ +      + +K+   M        +E A   RDR   +S  +  +
Sbjct: 184 SDEDYQRELDLAKELILNKKILI-KKLQEKMFYYADNLRFEEATALRDRCERISRSEIKS 242

Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
           +  +      D F +  +++ A +   F   G+   +   +++        ++    +  
Sbjct: 243 EIDFASSENYDIFVIASSQSRAVVVRIFMREGKIISSSHDYIQLHEGYDEDELYQRAIMG 302

Query: 293 FYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           FY+    P    IL++ E E    +E      +  K  I VPK  +++++I+ AL+  + 
Sbjct: 303 FYSHGKPPIIAPILVASEFEGKDSIEEFLSTLFEKKADIKVPKTAKRKQLIDLALL--NA 360

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           +   K  T+ +   IL +  K F+L  +P R+E +DNSH+ G + VG M V     F K 
Sbjct: 361 AELLKNETKENQSGILDEIKKLFSLQRVPSRVETFDNSHMSGVATVGAMSVYENGAFDKK 420

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR ++L       +D+ A MR +L RR    +KN                  PD+ ILD
Sbjct: 421 SYRIYHLE-----ARDEYAQMREMLLRRVESFLKN----------------PPPDLWILD 459

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEK-FFVKKGEALVLNMRD 524
           GG   L+ A  +L+   V   I +I+IAK        R+ G  K     + +   L   D
Sbjct: 460 GGSTLLNLALSILESSGV--NIDVIAIAKEKVDAKAHRAKGKAKDIIYSREDIFKLLDSD 517

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             L+F+Q+LRDEAHR AI  H+K + K+   S L  + GI   +   LL+ F T   I  
Sbjct: 518 KRLHFVQKLRDEAHRCAINFHKKTKLKSDNESKLLTLKGISQAKIIKLLKHFTTFDAIKE 577

Query: 584 SSPETLASIEGISKKIACKIY 604
           +S E L+++  ++ K A  I 
Sbjct: 578 ASVEELSTV--LNLKDANIIK 596


>gi|187918322|ref|YP_001883885.1| excinuclease ABC subunit C [Borrelia hermsii DAH]
 gi|238689289|sp|B2S0F9|UVRC_BORHD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119861170|gb|AAX16965.1| excinuclease ABC subunit C [Borrelia hermsii DAH]
          Length = 602

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/608 (27%), Positives = 282/608 (46%), Gaps = 33/608 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P   G Y+M     ++LY+GKA NL+ R+K+Y      +H+   ++  + NI   
Sbjct: 11  KVQELPTTSGCYKMYSQNNKILYIGKAKNLRARVKNYFLK-RISHKTKILMRNVANIEVI 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T +E EALLLE N+IK  KP +NI L+DDK +P I IT   K P ++K R        Y
Sbjct: 70  TTNSEYEALLLECNLIKEYKPDYNIKLKDDKGYPMIRITC-EKYPRIFKTRKIINDGSEY 128

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +   ++  ++ + +TF  R C          PCL F + +C G C  E   E+Y 
Sbjct: 129 FGPYVNAKNLDLVLDLINKTFKTRKCKKKS----KTPCLYFHMGQCLGVCYREDLEEQYK 184

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V + +  L+G    L ++    M +A  KED+E+AI  ++   +L  I          
Sbjct: 185 KEVDKIRHILNGKISKLLDETEIKMKEAIKKEDFEAAIKLKETKRSLIEISQTQIITRMN 244

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D   ++   +L  I    +  G+       F ++  E                +  
Sbjct: 245 KLSADYIYIHQTDSLNAIVILKYKDGKLVEKDINFDESIYEEDELTAKFITQYYTALNMI 304

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  I + ++ E  ++      +    K +I   +  E  KI+E A+ NA  +  +  + 
Sbjct: 305 VPNKIYIFKKIETENIT-KLINELKNTKTEIICEETKETIKIMEMAISNAKIALREYDNE 363

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L+       +  +PK IE +D SH+ G   V  +V        K+ YR + ++
Sbjct: 364 KN---RALESLKNILEMTKLPKTIEGFDISHLNGHKTVASLVSFKMGKPFKDGYRVYKIN 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             +    DD   ++ V+ RR+S+LI  +               + PD++++DGGKGQLSA
Sbjct: 421 SLNNGEIDDLKAIKEVISRRYSKLINEQ--------------LALPDLILIDGGKGQLSA 466

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  +LK L +EN + + ++AK  +       F   K + + L+  +P L  +Q +RDEAH
Sbjct: 467 AYSILKGLKIENEVIVCALAKKEEI-----IFLPNKTQGIKLSKGNPALQILQNVRDEAH 521

Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           R A + +R  R+    +   +I GIG  + + +L++ GT K I   + + +A    I+ K
Sbjct: 522 RRANSFNRTLRRNIKLNY-SKIKGIGEEKAKNILKTLGTYKDILLLNEDEIAKKMKINIK 580

Query: 599 IACKIYNH 606
           +A KI   
Sbjct: 581 MAKKIKKF 588


>gi|224533520|ref|ZP_03674109.1| excinuclease ABC, C subunit [Borrelia burgdorferi CA-11.2a]
 gi|224513193|gb|EEF83555.1| excinuclease ABC, C subunit [Borrelia burgdorferi CA-11.2a]
          Length = 603

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/605 (27%), Positives = 284/605 (46%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ R+KSY    N +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     +  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            + K  L+G    +  +I   +  A  KED+E+AI  ++   +L  I             
Sbjct: 188 DKVKSILNGNISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVHIHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  YR + L+   
Sbjct: 365 STKALESLKIVLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I N                  P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDFKAIKEVILRRYSEIINNN--------------LELPNLILIDGGKGQLNAAIS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRMLQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +I+GIG    + +L+S GT K I   S   ++     + ++A 
Sbjct: 526 NGFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKANVQLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|154173633|ref|YP_001407804.1| excinuclease ABC subunit C [Campylobacter curvus 525.92]
 gi|153792990|gb|EAU00017.2| excinuclease ABC, C subunit [Campylobacter curvus 525.92]
          Length = 607

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/626 (28%), Positives = 283/626 (45%), Gaps = 64/626 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQINN 57
            +P   GVYQ  D   R+LYVGKA  L+ R+KSY         S+  + RI  MIS+  +
Sbjct: 8   SLPSLSGVYQYFDSQNRLLYVGKAKILKNRVKSYFKFTPELAASDKVSPRIAKMISEAVH 67

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           + + VT +E +AL+LE + IK+LKP++NILLRDDK++PYI I    + P     R     
Sbjct: 68  LEYIVTPSEADALILENSFIKQLKPKYNILLRDDKTYPYIFINLNDEFPRFEITRKVVKG 127

Query: 118 QG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
               YFGP+ S     + + +L   F L   +  V     + CL  Q+ RC  PC G+IS
Sbjct: 128 SNIRYFGPYFSGAG--ELLEALYLNFNLVQKSSCV--KGKKACLFHQLGRCCAPCEGKIS 183

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            E Y + V +A   L   N  +   +   M+     E++E A   RD++  L ++Q   +
Sbjct: 184 KEDYDKIVQDALAALQNPNLLIAR-LEELMHSYAKAENFEQAAATRDKIETLKNMQTKVE 242

Query: 237 SIYNRMDCFSLY--HNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
               +++ F  Y   +         F             +     ST+  +   +     
Sbjct: 243 VDLAKLEDFEAYAVVSDKNMLCAVRFSVQNGKINGVKTTITGAKGSTDEDVSEAYRHIIL 302

Query: 295 TDKPC-----PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
              P         I   +  E+  L+E    +++  K  I  PK G+KRKI E A  NA 
Sbjct: 303 ESFPAGQPVTTGKIYTLKSFEDAGLVEQILNERHKRKFSIVSPKIGDKRKICEIAAKNAE 362

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
            S ++ L  ++    +L++  + F+L H P  IE +DNSH+ G + V  M+   +  + K
Sbjct: 363 VSISKYL--KMHDNRLLEEIKEYFSLTHTPYVIEAFDNSHLFGEANVAAMIRYSQGEWDK 420

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           + YR  ++       ++D   MR  L  R  +  K                 S PD+ ++
Sbjct: 421 SGYRHMHVK-----AKNDYEQMRESLIARALRFDK----------------LSPPDLWLI 459

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLNM 522
           DGG+  L+ A+ +L        + +I+IAK        R+ G   +K +   G    L+ 
Sbjct: 460 DGGEALLNLAREILASYG--ANVDVIAIAKEKIDAKAHRAKGEAKDKIYTPNG-TFSLSP 516

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKK-----AAYSPLDEINGIGPLRKRLLLQSFGT 577
            D  L F Q+LRDE+HRF I+ HRK R+K     +  S L    GI P     L+  +G+
Sbjct: 517 NDKKLQFFQKLRDESHRFVISFHRKTRQKEELQSSKLSRL----GISPGSIAKLIGFYGS 572

Query: 578 VKMISRSSPETLASIEGISKKIACKI 603
              I  +  + +A +   +K +A K+
Sbjct: 573 FDKIHEADLDEIAKVT--NKSVAQKL 596


>gi|152993484|ref|YP_001359205.1| excinuclease ABC subunit C [Sulfurovum sp. NBC37-1]
 gi|151425345|dbj|BAF72848.1| excinuclease ABC, C subunit [Sulfurovum sp. NBC37-1]
          Length = 598

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 176/621 (28%), Positives = 288/621 (46%), Gaps = 54/621 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY--MHSN-----NHTHRITHMISQINN 57
            +P  PGVYQ  D   ++LYVGKA +L+ RIKSY             + RI  M+ +   
Sbjct: 7   SLPNSPGVYQYFDDKDKLLYVGKAKSLKNRIKSYWRFTPTFIPNPGQSPRIIKMLHEAVR 66

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST- 116
           + + +  +E +AL+LE ++IK+LKP++NILLRDDK++PYI I +    P     R     
Sbjct: 67  LDYIIVESEEDALILENSLIKQLKPKYNILLRDDKTYPYIYIDESEAYPRFEITRKVVKG 126

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
              +Y+GPF S       +++L   F L            + CL +QIK+C  PC G++S
Sbjct: 127 KDITYYGPFPSGG--RALLDALYEVFPLVQKK--SCLREGKACLFYQIKKCLAPCEGKVS 182

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            + Y E V EAK+ ++  +  L + +   M +  ++E +E A   RD + A+S +   ++
Sbjct: 183 KDAYAEIVKEAKQAITKRSI-LTKTLQEKMQKLAVQERFEEAAALRDSIEAISSLHISSN 241

Query: 237 SIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
                   +D F++ +      I   F   G+   +   + +        +     L +F
Sbjct: 242 IDLANQMDLDIFAILNGDERGVIVKLFMRNGKIISSAYSYFRHTHIFDCNEAYRQALLEF 301

Query: 294 YTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
           YT       + IL +   E+   +  +   ++  K+ I  P++G K K+ + AL N    
Sbjct: 302 YTIDTPYVSKEILTAHHFEDALQVARTLSSRFEKKISIETPQRGPKAKLAKLALQNCKE- 360

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
               L  + +  ++ +       L  IP R+E +DNSH+MG + VG MVV  E  + K+ 
Sbjct: 361 ---LLKKKDNDTIMEQKIADLLELSTIPYRVESFDNSHMMGAATVGGMVVWDEGKWDKHS 417

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++ LH      +D+   M+ +L RR +                       PD+ ILDG
Sbjct: 418 YRRYELH-----ARDEYGQMKEMLTRRIADFKTQ----------------PAPDLWILDG 456

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEK-FFVKKGEALVLNMRDP 525
             GQ +    +    + +  + +I+IAK        R+ G  K         + L   D 
Sbjct: 457 --GQANLNLALSLLKDAQINLDVIAIAKEKLDAKAHRAKGAAKDILYTAARIIELKPNDK 514

Query: 526 ILYFIQRLRDEAHRFAITTHR-KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L++IQR RDEAHR+AI  H+ K+RK+     L    GIG    + L+  FGT   I  +
Sbjct: 515 RLHWIQRQRDEAHRYAIAYHQNKKRKEDTQVSLLNKKGIGKATVKKLIDYFGTFDAIESA 574

Query: 585 SPETLASIEGISKKIACKIYN 605
           + E +  +   +KKI+  I N
Sbjct: 575 TAEEIEKVT--NKKISHIIKN 593


>gi|154246286|ref|YP_001417244.1| excinuclease ABC, C subunit [Xanthobacter autotrophicus Py2]
 gi|154160371|gb|ABS67587.1| excinuclease ABC, C subunit [Xanthobacter autotrophicus Py2]
          Length = 779

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 222/502 (44%), Positives = 302/502 (60%), Gaps = 5/502 (0%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + +  P  PGVY+M+     VLYVGKA +++KR+ SY     HT+RI  MI+   ++ F 
Sbjct: 63  AVKHAPAGPGVYRMIAADSSVLYVGKAKSIRKRVLSYTRPVGHTNRIARMIAATASMEFV 122

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T TE EALLLEAN+IK+LKPRFN+LLRDDKSFPYILIT  H  P + KHR +    G Y
Sbjct: 123 STRTEPEALLLEANLIKQLKPRFNVLLRDDKSFPYILITADHVAPQITKHRGARNRPGDY 182

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFASV AV++TIN+L+R F LRSC+DS + +RTRPCLL QIKRC+GPCTGE+S   Y 
Sbjct: 183 YGPFASVWAVDRTINALERAFLLRSCSDSYYENRTRPCLLHQIKRCAGPCTGEVSHTDYA 242

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E V EA+ FLSG +  +KE++A  M  A+ + ++E A   RDRLAALS +Q         
Sbjct: 243 ELVREARAFLSGRSRAVKEELALEMEAASQELEFERAARLRDRLAALSAVQGSQGINPRG 302

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F+ +      C++  FF  GQN G   ++ + D   + A++L  FL QFY DKP
Sbjct: 303 VEEADVFACHQQGGATCVEVFFFRTGQNWGNRAYYPRADRSLSEAEVLGAFLAQFYEDKP 362

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
           CP  ILLS + EE +LL  +  ++ G++++I  P++GEKR +++ AL NA  +  + L+ 
Sbjct: 363 CPRLILLSHKVEEQALLAEALSEKTGHRIEIAAPQRGEKRDLVDHALQNAREALARTLAE 422

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
             +   +L+     F L   P+RIE+YDNSHIMG +AVG M+V G  GF K+QYRKFN+ 
Sbjct: 423 SATQTKLLEGVAATFGLKAPPQRIEVYDNSHIMGTNAVGGMIVAGPEGFRKSQYRKFNIK 482

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKN--EENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
             D+   DD  MMR VL RRFS+L+K    +                    I    + Q 
Sbjct: 483 SADIVPGDDFGMMREVLRRRFSRLLKEAPRDGAGEGGDVGGVQELDATGGDIGPASEAQS 542

Query: 477 SAAQGVLKKLNVENRITIISIA 498
           + A        +E  I   SIA
Sbjct: 543 TQAPSPAVMPGLEPGIHAGSIA 564



 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 102/170 (60%), Gaps = 2/170 (1%)

Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504
           + +               WPD+V++DGG GQL+AA+ VL +L + + + ++ IAKG  R 
Sbjct: 611 DSDPEEVDALPDATEASPWPDLVLIDGGLGQLNAARTVLDELGITD-VPLVGIAKGLDRE 669

Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGI 563
           AG E+FF+       +  RDP+LYFIQRLRDEAHRFAI +HR RRKK      L  I G+
Sbjct: 670 AGREQFFLPGRTPFRMEPRDPVLYFIQRLRDEAHRFAIGSHRARRKKDITEAGLQAIAGV 729

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           GP RKR LL+ FGT+K I R+S   L  + GI+   A  +Y++FH+    
Sbjct: 730 GPTRKRALLRHFGTLKAIERASLADLEQVAGINAATAKAVYDYFHERPPG 779


>gi|284931470|gb|ADC31408.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Mycoplasma gallisepticum str. F]
          Length = 670

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/614 (26%), Positives = 281/614 (45%), Gaps = 34/614 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +  P+ PG Y   +    ++Y+GKA N+ KR+  Y +      + + ++++I ++ F 
Sbjct: 86  KLDLAPKKPGCYLWKNHLNEIIYIGKAKNIYKRVHQYFNGP-KDLKTSKLVNEIFDVEFI 144

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
               E EALLLEAN+IK+ KPR+NILL+D+  +PYILIT K K P L   R+    +G +
Sbjct: 145 EVNNENEALLLEANLIKKHKPRYNILLKDNNGYPYILIT-KEKYPRLIYTRNFDPKKGKH 203

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFAS +   K  +       L     + F  + R C  + +  C   CT E+S   Y 
Sbjct: 204 YGPFASSEM--KAYDLYNLLLKLFPLK-NCFNKKGRKCEFYDLNLCMKACTHEVSEADYE 260

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
               +   F   G   + + +      A+ K D+E A  + D   A++ I +        
Sbjct: 261 VMKKKIDYFFHNGADQVLKGLKEKELIASEKFDFEQAKKYLDLQKAINLIFDKQIINLYS 320

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
              R+D  +    +N+ CI    +   Q     T       E    ++++ +L Q+Y D 
Sbjct: 321 AKERIDVLAYQIKENVICIVLFSYVSSQLVSKNTICDFYYGEE--QEVITSYLSQYYKDN 378

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ +  S +    +LL+ S   +        + +        +       + +   + 
Sbjct: 379 IKPKILYASLDQANATLLKDSLGIEIINPTSGKMNEIMSLAL--QNVTNELSQKYDSLVK 436

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            E    + L    K   +  +   +E+YDNS++     +  M+V   N F K +YRK+ +
Sbjct: 437 KEQRINLALDQLKKLIKVDKLNH-LEVYDNSNLFNTDKISAMIVFENNQFNKKKYRKYKI 495

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                    D   M  V+ RR  Q +KN             +F   PD++ILDGGK Q+ 
Sbjct: 496 KDQQALG--DYHYMYEVIYRRLYQALKN-------------NFVDLPDLIILDGGKHQVL 540

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+  +  L ++ RI +I +AK  K     +K      + + L+    + +F+  L++E 
Sbjct: 541 AAKKAIVDLQIDQRINLIGLAKNNKHQT--DKIVTSNLDEISLDKSSVLYFFLANLQEEV 598

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           H+FAI+  RK + K+ Y S LD+I G+G  RK+ L++ F T+  I ++S  +L+ +  + 
Sbjct: 599 HKFAISFFRKTKAKSLYDSILDQIKGLGKKRKQQLIEHFKTIDEIKKASIASLSQV--LP 656

Query: 597 KKIACKIYNHFHKN 610
            +IA K+     ++
Sbjct: 657 IEIAKKLKQKLDQS 670


>gi|294660391|ref|NP_853137.3| excinuclease ABC subunit C [Mycoplasma gallisepticum str. R(low)]
 gi|284812049|gb|AAP56705.2| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Mycoplasma gallisepticum str. R(low)]
 gi|284930618|gb|ADC30557.1| UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
           [Mycoplasma gallisepticum str. R(high)]
          Length = 670

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/614 (26%), Positives = 281/614 (45%), Gaps = 34/614 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +  P+ PG Y   +    ++Y+GKA N+ KR+  Y +      + + ++++I  + F 
Sbjct: 86  KLDLAPKKPGCYLWKNHLNEIIYIGKAKNIYKRVHQYFNGP-KDLKTSKLVNEIFYVEFI 144

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
               E EALLLEAN+IK+ KPR+NILL+D+  +PYIL+T K K P L   R+    +G +
Sbjct: 145 EVNNENEALLLEANLIKKHKPRYNILLKDNNGYPYILMT-KEKYPRLIYTRNFDPKKGKH 203

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFAS +   K  +       L     + F  + R C  + +  C   CT E+S   Y 
Sbjct: 204 YGPFASSEM--KAYDLYNLLLKLFPLK-NCFNKKGRKCEFYDLNLCMKACTHEVSEADYE 260

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
               +   F   G   + + +    + A+ K D+E A  + D   A++ I +        
Sbjct: 261 VMKKKIDYFFHNGADQVLKDLKEKESIASEKFDFEQAKKYLDLQKAINLIFDKQIINLYS 320

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
              R+D  +    +N+ CI    +   Q     T       E    ++++ +L Q+Y D 
Sbjct: 321 AKERIDVLAYQIKENVICIVLFSYVSSQLVSKNTICDFYYGEE--QEVITSYLSQYYKDN 378

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ +  S +    +LL+ S   +        + +        +       + +   + 
Sbjct: 379 IKPKILYASLDQANATLLKDSLGIEIINPTSGKMNEIMSLAL--QNVTNELSQKYDSLVK 436

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            E    + L    K   +  +   +E+YDNS++     V  M+V   N F K +YRK+ +
Sbjct: 437 KEQRINLALDQLKKLIKVDKLNH-LEVYDNSNLFNTDKVSAMIVFENNQFNKKKYRKYKI 495

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                    D   M  V+ RR  Q +KN             +F   PD++ILDGGK Q+ 
Sbjct: 496 KDQQALG--DYHYMYEVIYRRLYQALKN-------------NFVDLPDLIILDGGKHQVL 540

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+  +  L ++ +I +I +AK  K     +K      + + L+    + +F+  L++E 
Sbjct: 541 AAKKAIVDLQIDKKINLIGLAKNNKHQT--DKIVTFDLDEISLDKSSALYFFLANLQEEV 598

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           H+FAI+  RK + K+ Y S LD+I G+G  RK+ L++ F T+  I ++S  +L+ +  + 
Sbjct: 599 HKFAISFFRKTKAKSLYDSILDQIKGLGKKRKQQLIEHFKTIDEIKKASIASLSQV--LP 656

Query: 597 KKIACKIYNHFHKN 610
            +IA K+     ++
Sbjct: 657 IEIAKKLKQKLDQS 670


>gi|219685233|ref|ZP_03540053.1| excinuclease ABC subunit C [Borrelia garinii Far04]
 gi|219673329|gb|EED30348.1| excinuclease ABC subunit C [Borrelia garinii Far04]
          Length = 603

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ RIKSY      +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     Q  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y   V
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQIEV 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
           ++AK  LSG    +  +I   +  A  KED+E+AI  ++  ++L  I             
Sbjct: 188 NKAKSILSGNISEILGQIDIKLKLAVQKEDFETAIKLKEMKSSLIEINRIQIVTKANNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++   N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVYVHPGDNVNTIIVLKYRDGKLVERDANFDESICKKDELLLQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDVDTKNVEKLINEIKNTKTEIIYKETKEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  Y+ + ++   
Sbjct: 365 SNKTLESLKLLLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKINSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I  +                 P+++++DGGKGQLSAA  
Sbjct: 425 KGEIDDFKAIKEVILRRYSEIINKK--------------LELPNLILIDGGKGQLSAAFS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +E+++ + S+AK  +       F +   + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKSLKIEDKVKVCSLAKKHET-----IFLINNKKGINLPQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +I+G+G    + +L+  GT K I   S   ++    I+ K+A 
Sbjct: 526 NGFNKKRREKITL-LYTKIDGVGEKTAQKILKLIGTYKDILPLSENEISEKIKINIKLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|307298657|ref|ZP_07578460.1| excinuclease ABC, C subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915822|gb|EFN46206.1| excinuclease ABC, C subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 575

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 164/601 (27%), Positives = 281/601 (46%), Gaps = 49/601 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN--NHTHRITHMISQINNIR 59
            + Q+PE PGVY   +    V+YVGKA  L++R+ SY   +  +   +   +  +  ++ 
Sbjct: 8   KASQLPEEPGVYIFKNEKDDVVYVGKAKKLKRRVLSYFRESTWSKNEKARCIAEEAEDLD 67

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119
           F +  +E EALLLEAN+I   KP+FN+LLRD +++PYI I+   + P L   R    ++G
Sbjct: 68  FIMVTSEREALLLEANLIFNKKPKFNVLLRDSRTYPYIYIS-ADQYPYLAITRT-KELEG 125

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           SYFGP+ S   V K +  LQ+ F +R+C   + R + +PC L+ +K CS PC  ++S E+
Sbjct: 126 SYFGPYTSAGLVRKLLEFLQKVFKIRTCTYELSRVK-KPCFLYHLKMCSAPCVEKVSPEE 184

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y E +    +FL G    ++E + + M   +    +E A   RD L+ +  +        
Sbjct: 185 YREQLSALIEFLEGDTLKVREALLKRMAVLSEALQFERAAEIRDILSTMDDLYAFQGVEA 244

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
             +D  +     +           G   G   F      E T    ++ F          
Sbjct: 245 -PLDLKADVLAVSAGLAALLQVRGGMLLGKLIFDFP---EGTPIDFITQFYYAK--GNRM 298

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ ++++       L +    +       I  P+  ++ +++  A  N       +L   
Sbjct: 299 PKALIVTG------LKKKDIKQFKRDFPYIGEPRDEQEERLLSIAFKNIDEEMKIRL--- 349

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +    LK   +   L   P RIE  D SH  G   V  +VV       K++YR++ +  
Sbjct: 350 -NATHSLKQAQQILGLKRFPSRIEGIDISHTQGLYTVASVVVFDNGKPNKSEYRRYRI-- 406

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
           ++++  +D   M  V++RR+++                      PD++++DGG+ QL A 
Sbjct: 407 SELEEPNDFEAMATVVKRRYTK-------------------HPLPDLLLIDGGEPQLRAV 447

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
           +    ++ ++    I+ +AK        E  F+   + + L    P+L  I  + DEAHR
Sbjct: 448 EKAFAEIGIQEY-EIVGLAK-----EFNELVFLDNRDRVKLKEEHPVLRMIISIDDEAHR 501

Query: 540 FAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAI  HR  R++   S  +D+I GIGP RK+ L+++FG+VK I+ +S   L S+   SK 
Sbjct: 502 FAINYHRVLRERRFQSSKIDDIPGIGPKRKKALMRAFGSVKGIAEASEADLYSVLRNSKA 561

Query: 599 I 599
           +
Sbjct: 562 V 562


>gi|157165055|ref|YP_001466435.1| excinuclease ABC subunit C [Campylobacter concisus 13826]
 gi|112801609|gb|EAT98953.1| excinuclease ABC, C subunit [Campylobacter concisus 13826]
          Length = 605

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 188/624 (30%), Positives = 292/624 (46%), Gaps = 58/624 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQINN 57
            +P  PGVYQ  D   R+LYVGKA  L+ R+KSY         +   + RI+ MIS+  +
Sbjct: 8   TLPNEPGVYQYFDAQNRLLYVGKAKILKNRVKSYFKFTPSLAPAEKLSPRISKMISEAVH 67

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           + + VT +E +AL+LE + IK+LKP++NILLRDDK++PYI I    + P     R     
Sbjct: 68  LEYIVTPSEADALILENSFIKQLKPKYNILLRDDKTYPYIFINLNDEFPRFEITRKVVKG 127

Query: 118 QG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
               YFGP+ S     + + +L   F L      +     + CL +Q+KRC  PC G+IS
Sbjct: 128 SNIRYFGPYFSGAG--ELLEALYLNFNLVQKKSCI--KGKKACLFYQLKRCYAPCEGKIS 183

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            E Y + V +A   L   N  +   +   M      EDYE A   RD++  L ++Q   +
Sbjct: 184 KESYAKIVADATAALQNPNLLIAR-LEELMLNYAKAEDYEQAAATRDKMQTLKNMQTKVE 242

Query: 237 SI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS---ESTNAQILSYFL 290
                    + +S+    ++ C        G+  G  T   +  +   +  N       L
Sbjct: 243 VDLAKLEDFEAYSVACVHDMICAVRFSVQSGKITGVKTDITQAKNAQKDEINEAYKQAIL 302

Query: 291 RQFYTDKPCPE-NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
           + F   +P     I ++E  E++ L+E    +++G K  IT PK G+KRKI E A  NA 
Sbjct: 303 KSFIAGQPIISTKIYVNENFEDSELVEEILNERFGRKFSITCPKIGDKRKICEIATKNAE 362

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
            S  + L  +     +L +  + F L H P  +E YDNSH+ G ++VG MV      + K
Sbjct: 363 VSIEKYL--KTHDNELLNEIKEYFGLAHTPYVVEAYDNSHLFGEASVGAMVRYEHGEWAK 420

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YR  +L        +D   MR  L  R  +  K                 S PD+ ++
Sbjct: 421 QNYRHMHLGSK-----NDYDQMRESLTARALRFDK----------------LSPPDLWVI 459

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLNM 522
           DGG+  L+ A  +L        + +I+I+K        R+ G   +K + K G +  L+ 
Sbjct: 460 DGGEALLNLACEILASSG--ANVDVIAISKEKIDAKAHRAKGEAKDKIYTKNG-SFSLST 516

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKK--AAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F Q++RDE+HRF I+ HRK R+K     S L +  G+       L+  +G+   
Sbjct: 517 SDKKLQFFQKMRDESHRFVISFHRKTRQKNDMQRSVLRQ-AGVSEGSIAKLISFYGSFDK 575

Query: 581 ISRSSPETLASIEGISKKIACKIY 604
           IS ++ + +A I   +K +A K+ 
Sbjct: 576 ISEANLDEVAKIT--NKSVAAKLL 597


>gi|225552304|ref|ZP_03773244.1| excinuclease ABC, C subunit [Borrelia sp. SV1]
 gi|225371302|gb|EEH00732.1| excinuclease ABC, C subunit [Borrelia sp. SV1]
          Length = 603

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 165/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ R+KSY    N + +I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRVKSYFLEKN-SLKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     +  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCHKENLEKEYQKEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            +AK  L+G    +  +I   +  A  KED+E+AI  ++   +L  I             
Sbjct: 188 DKAKSILNGNISEILSQIDIKLKLAIQKEDFETAIKLKEIKNSLIEINQIQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVHVHPGENVNTIIVLKYRNGKLVERDANFDESICKENELILQFLTQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  YR + L+   
Sbjct: 365 SNKALESLKILLEMNKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKKNYRLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I N   L              P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDFKAIKEVISRRYSEIINNNLEL--------------PNLILIDGGKGQLNAAIS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKQET-----IFLTTNKKGINLPHGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++K R+K       +I+GIG    + +L+S GT K I   S   ++    ++ ++A 
Sbjct: 526 NGFNKKSREKITL-LYTKIHGIGEKTAQKILKSIGTYKDIFPLSENEISEKIKVNVQLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|118474808|ref|YP_892422.1| excinuclease ABC subunit C [Campylobacter fetus subsp. fetus 82-40]
 gi|118414034|gb|ABK82454.1| excinuclease ABC, C subunit [Campylobacter fetus subsp. fetus
           82-40]
          Length = 602

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/628 (28%), Positives = 276/628 (43%), Gaps = 58/628 (9%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P  PGVYQ  D   ++LYVGKA  L+ R+KSY         S+  + RI  MI++
Sbjct: 5   ELKTLPNEPGVYQYFDKNSKLLYVGKAKVLKNRVKSYFSFTGTLSPSSRLSPRIAKMINE 64

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
             +I +  T +E +AL+LE + IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 65  AVHIEWITTSSESDALILENSFIKQLKPKYNILLRDDKTYPYIYVDLSSNFPRFEITRKV 124

Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
              +   YFGPF      ++ + +L   F L            + CL  QI RC  PC G
Sbjct: 125 IKGKNIKYFGPF--FKGAKEILEALYLEFKLVQKK--SCLKDKKACLFHQINRCHAPCIG 180

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            I  E+Y + V  A K L      + E ++  M     +E+YE A   RD++  +  I  
Sbjct: 181 AIKKEEYAKIVSSAIKKLKNPELLV-ENLSNLMQNFAERENYEEAAKLRDQINTIKDISI 239

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA---QILS 287
                       +  ++   K   C        G+                         
Sbjct: 240 KVQIDIAKLEDFEAIAISCAKGFVCSVRFSIRDGKVSFANHSLTPAKDTINLDLSGIYKQ 299

Query: 288 YFLRQFYTDKPCPENILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
             L  F  D P     + +  E E+  L+     K++  K  I  PK G+K+ ++E AL 
Sbjct: 300 VILEAFPDDLPINTTKIYTYSEFEDMELVSQILSKRHSKKFHIISPKAGDKKSLLEVALK 359

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           N      + L  +      L +  + F L ++P +IE +DNSH+ G + VG M+    + 
Sbjct: 360 NCDIFIEKHL--KAHSYEFLNEIKEYFKLTNLPIKIECFDNSHLFGTAPVGGMISWELDK 417

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           F K  YR  +L+       +D   M  +L  R  +  K                 + PD+
Sbjct: 418 FKKEHYRHIHLNST-----NDYDQMNEMLTNRALRFDK----------------LNPPDL 456

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFVKKGEALV 519
            +LDGG   L  A+ +++       + II+I+K        R+ G   +K + + G+ L 
Sbjct: 457 WVLDGGDALLKLAKNIVQSSG--ANVDIIAISKEKIDAKAHRAKGNANDKIYTEFGK-LS 513

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGT 577
           L+  D  L F QRLRDEAHRFAI+ H+  RKK     S L  + G+     + LL  FG+
Sbjct: 514 LSSNDKKLQFFQRLRDEAHRFAISFHQNSRKKQDLQSSELMNL-GVSDGSIKKLLSYFGS 572

Query: 578 VKMISRSSPETLASIEGISKKIACKIYN 605
            + I ++S + +  +   +K +A KI  
Sbjct: 573 FENIHKASWDDIKKVT--NKTVANKILA 598


>gi|119367630|sp|Q0SN50|UVRC_BORAP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 598

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ RIKSY      +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     Q  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y E +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNTPCLYYHMGQCLGVCFKENLEKEYQEEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            +AK  L+G    +  +I   +  A  KED+E+AI  ++  ++L  I             
Sbjct: 188 DKAKSILNGNISEILSQIDIKLKLAVQKEDFENAIKLKEIKSSLIEINQIQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 TDYVYVHPGENVNTIIVLKYRNGKLVERDANFDESICKKNELILQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T   E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNAEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
           +   L+       +  +PK IE +D +H+ G   V  MV        K  Y+ + L+   
Sbjct: 365 NNKALESLKIFLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I                    P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDVKAIKEVILRRYSEIIN--------------KNLELPNLILIDGGKGQLNAAFS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKHET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +INGIG    + +L+S GT K I   S   ++    ++ ++A 
Sbjct: 526 NGFNKKRREKITL-LYTKINGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNIRLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|15791172|ref|NP_280996.1| excinuclease ABC subunit C [Halobacterium sp. NRC-1]
 gi|169236928|ref|YP_001690128.1| excinuclease ABC subunit C [Halobacterium salinarum R1]
 gi|73920383|sp|Q9HMU5|UVRC_HALSA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229558033|sp|B0R7R3|UVRC_HALS3 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|10581790|gb|AAG20476.1| excision nuclease chain C [Halobacterium sp. NRC-1]
 gi|167727994|emb|CAP14782.1| excinuclease ABC subunit C [Halobacterium salinarum R1]
          Length = 590

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/621 (28%), Positives = 279/621 (44%), Gaps = 56/621 (9%)

Query: 3   SEQMPECPGVYQM--LDIAG-----RVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI 55
           + ++P  PGVYQ    D  G     RVLYVGKA +++ R++SY   +  + RI  M+++ 
Sbjct: 10  ASELPAEPGVYQFVARDPDGTADGERVLYVGKAVDIRDRVRSY--GDPRSERIAGMVARA 67

Query: 56  NNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS 115
           +++   VT TE +ALLLEAN++KR +PR+N+ L+DDKS+P + +T   + P +   RD  
Sbjct: 68  DDVTVAVTDTETQALLLEANLVKRHQPRYNVRLKDDKSYPLVQVTSHREAPRIEVTRDP- 126

Query: 116 TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
               + FGP+     VE  + +++  + LR C++  +R R RPCL +++  C+ PCTG I
Sbjct: 127 DPGAAAFGPYTDKGDVETVVKAVRSVYGLRGCSEHKYRDRERPCLDYEMGLCAAPCTGAI 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN-- 233
           S  +Y E V  A +F  G    L + + R M  A   E +E A   RDRLA +       
Sbjct: 187 SEREYREAVESATRFFEGETGALADPLRREMAAAAQAEAFERAANLRDRLAVVEGFHEGG 246

Query: 234 ------HNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL- 286
                  +       D   +    + A +       GQ        L+          + 
Sbjct: 247 GAAVAAGDADAGASTDVLGVAVEGDAATVARLHAEGGQLVERDQHRLEAPQGEDRVAAVL 306

Query: 287 SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
           + FL Q+Y ++  PE ILL E   +  +            V + VP  G + +++E AL 
Sbjct: 307 AAFLVQYYAERDLPERILLPEPHGDDEVAAW----LDAADVAVGVPGAGREARLVELALK 362

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NAHR               L        +   P+RIE  D SH  G   VG  V   +  
Sbjct: 363 NAHR--------RAGGGDELGALADALGV-RRPERIEGVDVSHAQGREVVGSNVCFVDGS 413

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
                YR+  L        DD A MR ++  R  + +   ++                 V
Sbjct: 414 AETADYRRKKLDEE----NDDYANMRRLVGWRAERAVDGRDDRPDPD------------V 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGG+GQL AA   ++    +    +I++AK        E+  V            P 
Sbjct: 458 LLVDGGRGQLDAALDAVEAAGWDGPDAVIALAKD-------EEVVVTPDRTYDWGSDAPQ 510

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           L+ +QR+RDEAHRFA+  HR  R       LD I G+GP  +  LL  FG+V  + ++S 
Sbjct: 511 LHVLQRVRDEAHRFAVAYHRTLRDDVTT-ALDGITGVGPELRARLLGRFGSVAGVRQASV 569

Query: 587 ETLASIEGISKKIACKIYNHF 607
           + L  + G+ +  A  I    
Sbjct: 570 KDLRDVAGVGEATAETIAKRL 590


>gi|119367632|sp|Q661G2|UVRC_BORGA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 603

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 165/605 (27%), Positives = 284/605 (46%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ RIKSY      +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P I IT   K P + K R     Q  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMIRIT-HEKYPRILKTRKIINDQSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y   V
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQIEV 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
           ++AK  L+G    +  +I   +  A  KED+E+AI  ++  ++L  I             
Sbjct: 188 NKAKSILNGNISEILSQIDIKLKLAVQKEDFETAIKLKEMKSSLIEINQIQIVTKANNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVYVHPGENVNTIIVLKYRDGKLVERDANFDESICKKDELVLQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDVDTKNVEKLINEIKNTKTEIIYKETKEILKIMEMAISNAKLSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  Y+ + L+   
Sbjct: 365 SNKALESLKIFLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++  + RR+S++I  +                 P+++++DGGKGQLSAA  
Sbjct: 425 KGEIDDFRAIKEAILRRYSEIINKK--------------LELPNLILIDGGKGQLSAAFS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +E+++ + S+AK  +       F +   + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKSLKIEDKVKVCSLAKKHET-----IFLITNKKGINLPQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +I+G+G    + +L+  GT K I   S   ++    ++ K+A 
Sbjct: 526 NGFNKKRREKITL-LYKKIDGVGEKTAQKILKLIGTYKDILPLSENEISEKIKVNIKLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|224532005|ref|ZP_03672637.1| excinuclease ABC subunit C [Borrelia valaisiana VS116]
 gi|224511470|gb|EEF81876.1| excinuclease ABC subunit C [Borrelia valaisiana VS116]
          Length = 598

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/605 (27%), Positives = 286/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P   G Y+ML+   ++LY+GKA NL+ RIKSY    N +H+I  ++  + +I    T 
Sbjct: 14  QLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEKN-SHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     Q  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNVPCLYYHMGQCLGVCYKENLEKEYQKEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            +AK  LSG    +  +I   +  A  KED+E+AI  R+  ++L  I             
Sbjct: 188 DKAKSILSGNTSEILSQIDIKLKLAIQKEDFETAIKLRETKSSLIEINQVQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVHVHPGENINTIIVLKYRNGKLVERDANFDESICKQNELILQFLTQYYTSINMVVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  Y+ + L+   
Sbjct: 365 SNKALESLKIFLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I                    P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDFKAIKEVISRRYSEIIN--------------KNLELPNLILIDGGKGQLNAAFS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F +   + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKHET-----IFLITNKKGINLPQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+        +I+GIG    + +L+S GT K I   S   ++    ++ ++A 
Sbjct: 526 NGFNKKRRENITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNIQLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|305431707|ref|ZP_07400876.1| excision endonuclease subunit UvrC [Campylobacter coli JV20]
 gi|304445302|gb|EFM37946.1| excision endonuclease subunit UvrC [Campylobacter coli JV20]
          Length = 604

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/624 (27%), Positives = 288/624 (46%), Gaps = 53/624 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R++SY         +  ++ RI  MI +
Sbjct: 13  ELQTLPANAGVYQYFNAEGKLLYVGKAKNLKNRVRSYFAFTPNLRANPKNSLRIQKMIEE 72

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +    + P     R  
Sbjct: 73  AVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFNEEFPRFEITRKL 132

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 133 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 185

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y   + +A   L   +  + + + + M      E+YE A   RD++A +  ++ 
Sbjct: 186 KITQEEYRLILDKAINALLSPSILV-KNLEKQMFHLAQNENYEEAAKIRDQIATIRDLEI 244

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    LK +++    +I   
Sbjct: 245 KVEIDIAKLEDFEIFALACESSMLSTLRFVVQNGKIISANSKITPLKNNTDFDKNEIYKQ 304

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         + + E+ E+  LLE    +++  K+ I VPK GEKR+I + A  
Sbjct: 305 LILENFSVDIPLVANTVYVYEDFEDRELLEEILSQRFDKKISIKVPKIGEKRRICDLAFQ 364

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       + S   I K+    F L ++P  IE++DNSH+ G + VG M+      
Sbjct: 365 NACLNIQ--KEQKNSDFNIQKELKNYFELENLPNCIEVFDNSHLQGVANVGAMITYKMGT 422

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K+ YRKF+L        +D   MR VL R                +  E+     PD+
Sbjct: 423 WDKSNYRKFHLKYK-----NDYEQMREVLTR----------------RALEFDKMPAPDL 461

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G +           L++
Sbjct: 462 WLIDGGKALLDLAKEIILSSGANVDILAISKEKINAKAHRAKGGAKDKIHSLKGEFALSI 521

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEIN-GIGPLRKRLLLQSFGTVKMI 581
            D  L F+Q+LRDEAHRFAI+ H+  +KK   S    +  G+     + LL  +G+ + I
Sbjct: 522 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLSSSKLVKSGLSAGVIQKLLAYYGSFEAI 581

Query: 582 SRSSPETLASIEGISKKIACKIYN 605
             ++ E L  + G  KK A KI  
Sbjct: 582 YEANFEELCQLVG--KKSAQKIKE 603


>gi|216263387|ref|ZP_03435382.1| excinuclease ABC, C subunit [Borrelia afzelii ACA-1]
 gi|215980231|gb|EEC21052.1| excinuclease ABC, C subunit [Borrelia afzelii ACA-1]
          Length = 603

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/605 (27%), Positives = 285/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ RIKSY      +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     Q  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y E +
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNTPCLYYHMGQCLGVCFKENLEKEYQEEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            +AK  L+G    +  +I   +  A  KED+E+AI  ++  ++L  I             
Sbjct: 188 DKAKSILNGNISEILSQIDIKLKLAVQKEDFENAIKLKEIKSSLIEINQIQIVTKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 TDYVYVHPGENVNTIIVLKYRNGKLVERDANFDESICKKNELILQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T   E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDIDTKNAEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
           +   L+       +  +PK IE +D +H+ G   V  MV        K  Y+ + L+   
Sbjct: 365 NNKALESLKIFLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I                    P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDVKAIKEVILRRYSEIIN--------------KNLELPNLILIDGGKGQLNAAFS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENKVKVCSLAKKHET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +INGIG    + +L+S GT K I   S   ++    ++ ++A 
Sbjct: 526 NGFNKKRREKITL-LYTKINGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNIRLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|57168144|ref|ZP_00367283.1| excinuclease ABC, C subunit [Campylobacter coli RM2228]
 gi|57020518|gb|EAL57187.1| excinuclease ABC, C subunit [Campylobacter coli RM2228]
          Length = 604

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/624 (27%), Positives = 288/624 (46%), Gaps = 53/624 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R++SY         +  ++ RI  MI +
Sbjct: 13  ELQTLPANAGVYQYFNAEGKLLYVGKAKNLKNRVRSYFAFAPNLRANPKNSLRIQKMIEE 72

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +    + P     R  
Sbjct: 73  AVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFNEEFPRFEITRKL 132

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 133 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 185

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y   + +A   L   +  + + + + M      E+YE A   RD++A +  ++ 
Sbjct: 186 KITQEEYRLILDKAINALLSPSILV-KNLEKQMFHLAQNENYEEAAKIRDQIATIRDLEI 244

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    LK +++    +I   
Sbjct: 245 KVEIDIAKLEDFEIFALACESSMLSTLRFVVQNGKIISANSKITPLKNNTDFDKNEIYKQ 304

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         + + E+ E+  LLE    +++  K+ I VPK GEKR+I + A  
Sbjct: 305 LILENFSVDIPLVANTVYVYEDFEDRELLEEILSQRFDKKISIKVPKIGEKRRICDLAFQ 364

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       + S   I K+    F L ++P  IE++DNSH+ G + VG M+      
Sbjct: 365 NACLNIQ--KEQKNSDFNIQKELKNYFELENLPNCIEVFDNSHLQGVANVGAMITYKMGT 422

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K+ YRKF+L        +D   MR VL R                +  E+     PD+
Sbjct: 423 WDKSNYRKFHLKYK-----NDYEQMREVLTR----------------RALEFDKMPAPDL 461

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G +           L++
Sbjct: 462 WLIDGGKALLDLAKEIILSSGANVDILAISKEKINAKAHRAKGGAKDKIHSLKGEFALSI 521

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEIN-GIGPLRKRLLLQSFGTVKMI 581
            D  L F+Q+LRDEAHRFAI+ H+  +KK   S    +  G+     + LL  +G+ + I
Sbjct: 522 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLSSSKLVKSGLSAGVIQKLLAYYGSFEAI 581

Query: 582 SRSSPETLASIEGISKKIACKIYN 605
             ++ E L  + G  KK A KI  
Sbjct: 582 YEANFEELCQLVG--KKSAQKIKE 603


>gi|119953245|ref|YP_945454.1| excinuclease ABC subunit C [Borrelia turicatae 91E135]
 gi|254764925|sp|A1QZP2|UVRC_BORT9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|119862016|gb|AAX17784.1| excinuclease ABC subunit C [Borrelia turicatae 91E135]
          Length = 602

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/608 (26%), Positives = 280/608 (46%), Gaps = 33/608 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             ++ P   G Y+M     ++LY+GKA NL+ R+K+Y      + +   ++  + NI   
Sbjct: 11  KVQEFPTTSGCYKMYSQDNKILYIGKAKNLRSRLKNYFLEKI-SLKTKILMRNVVNIEVI 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T +E EALLLE N+IK  KP +NI L+DDK +P I IT   K P ++K R        Y
Sbjct: 70  TTNSEYEALLLECNLIKEHKPDYNIKLKDDKGYPMIRITC-EKYPKVFKTRKIINDGSEY 128

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +   ++  +N + +TF  R C          PCL F + +C G C      E+Y 
Sbjct: 129 FGPYVNAKHLDLVLNLINKTFKTRKCKKKSKN----PCLYFHMGQCLGVCYRNDLEEQYK 184

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E V++ +  L+G    L ++I   M +   +ED+ESAI  ++   +L  I          
Sbjct: 185 EEVNKIRHILNGNISKLLDEIEIKMKEVIKREDFESAIKLKETKRSLIEISQTQIITKIN 244

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D   ++   NL  I    +  G+       F ++  E                +  
Sbjct: 245 KLSTDYIYIHKTDNLNVIVIFKYKDGKLVEKDINFDESIYEEEELIAEFITQYYTSLNMI 304

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I + ++ E   +      +      +I   +  +  KI+E A+ NA  +     + 
Sbjct: 305 VPDKICIFKKIETEDIT-KLINELKSTNTEIVYEETKDAIKIMEMAISNAEIALKAYNNE 363

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L++      +  +PK IE +D +H+ G   V  +V        K+ YR + ++
Sbjct: 364 KNK---ALENLKIILEMTKLPKTIEGFDIAHLNGYKTVASLVTFKMGKPFKDGYRVYKIN 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
             +    +D   ++ ++ RR+++LI  +  L              P ++++DGGKGQL+A
Sbjct: 421 SLNDGEINDFKAIKEIISRRYTKLINEQLEL--------------PTLILIDGGKGQLNA 466

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  +LK L +E+++TI ++AK  +       F   K + + L   +P L  +Q +RDE+H
Sbjct: 467 AYSILKGLKIEDKVTICALAKQEET-----IFLPNKTQGIKLPKGNPALKILQNVRDESH 521

Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           R A + +RK RK    +   +I GIG  + + +L++ GT K I   + + +A    I+ K
Sbjct: 522 RKANSFNRKLRKNIKLNY-SKIEGIGEKKAKNILKTLGTYKDIFLLNEDEIAQKMKINIK 580

Query: 599 IACKIYNH 606
           +A KI   
Sbjct: 581 MAKKIKKF 588


>gi|225850480|ref|YP_002730714.1| excinuclease ABC subunit C [Persephonella marina EX-H1]
 gi|225644935|gb|ACO03121.1| excinuclease ABC subunit C [Persephonella marina EX-H1]
          Length = 580

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/605 (25%), Positives = 276/605 (45%), Gaps = 45/605 (7%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           ++ P+ PGVY      G  +Y+GKA N++ R+K +++      +   +  + + I + +T
Sbjct: 18  DEAPQSPGVYLFKGKKGEYIYIGKAKNIKNRLKGHLNQYRIDPKEKKIFDESSKIEWIIT 77

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            ++ EA +LE  +IK+ KP++N+ L+    +P ++ITD    P +   R    I+G YFG
Sbjct: 78  KSDYEAFVLENELIKQYKPKYNVRLKSGSGYPMLVITDDE-YPTVVISRKFGEIEGEYFG 136

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PF          + + + F LR+C       R   C  + +  CS PC  +IS + Y   
Sbjct: 137 PFLPARTARAMKDLIHKLFRLRTC--DPLPKRDIVCFDYHLGLCSAPCVNKISKKDYNFD 194

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           V  AK FLSG       ++   + +   K ++E A + RD++ A+ ++ +  + +   ++
Sbjct: 195 VKAAKAFLSGDVKKFIYRLYDRLEEYKNKLNFEKASVVRDQILAMENLISKQEVLGLPVN 254

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
              +++                +R     F++   E      +S     +      PE +
Sbjct: 255 EADIFYFSGK---DVYLIVVRGSRIVGKEFIQIKQEGIQDFEISVISNYYIRGNFIPEVV 311

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           + + +  +   L+    ++ G  V++      E +  I++ + +   S            
Sbjct: 312 ISNRKFSDHKNLKRWLSEKKGSDVRLLFDIPDEIKGFIDRNIGSVDLSD----------- 360

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             LK+  K+     +P+RIE +D S + G   VG  VV       K +YR+F +    V 
Sbjct: 361 --LKEIFKRTFGFDLPERIEGFDISTLFGDFTVGSAVVWENGKMNKREYRRFKIKT--VD 416

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A +R +L RRF +  + +                 P +V++DGGKG L   + V 
Sbjct: 417 GIDDYASLRELLFRRFRKYKEMDNP---------------PRLVLIDGGKGHLKQGEIVR 461

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
             L +   + I S+AK        E  +   G+++ L    P+L     +RDEAHRFA++
Sbjct: 462 DALGI-KNLRIFSLAKKE------EILYTDDGKSVYLYNYQPLLKLFTTIRDEAHRFALS 514

Query: 544 THRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            +RK R++      LD+I G+G  RK +L +++ TV  I+++S E L  + GI +K+A  
Sbjct: 515 YNRKLRERDTLKELLDKIEGVGKKRKEILYRTYKTVDRIAQASVEELKKL-GIPEKVAQN 573

Query: 603 IYNHF 607
           I  + 
Sbjct: 574 IKKYL 578


>gi|219684466|ref|ZP_03539410.1| excinuclease ABC subunit C [Borrelia garinii PBr]
 gi|219672455|gb|EED29508.1| excinuclease ABC subunit C [Borrelia garinii PBr]
          Length = 603

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 166/605 (27%), Positives = 286/605 (47%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ RIKSY      +H+I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P + IT   K P ++K R     Q  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PCL + + +C G C  E   ++Y   V
Sbjct: 132 FTNVKKLDQVLDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQIEV 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
           ++AK  LSG    + ++I   +  A  KED+E+AI  ++  ++L  I             
Sbjct: 188 NKAKSILSGNISEILDQINIKLKLAVQKEDFETAIKLKEMKSSLIEINRIQIVTKANNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++   N+  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 IDYVYVHPGDNVNTIIVLKYRDGKLVERDANFDESICKKDELLLQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +  +T  +E    +    K +I   +  E +KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDVDTKNVEKLINEIKNTKTEIIYKETKEIKKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  YR + L+   
Sbjct: 365 SNKALESLKLLLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLL 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I  +                 P+++++DGGKGQLSAA  
Sbjct: 425 KGEIDDFKAIKEVILRRYSEIINKK--------------LELPNLILIDGGKGQLSAAFS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +E+++ + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKSLKIEDKVKVCSLAKKHET-----IFLTTNKKGINLTQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR++       +I+G+G    + +L+  GT K I   S   ++    ++ K+A 
Sbjct: 526 NRFNKKRREQITL-LYTKIDGVGEKTAQKILKLIGTYKNILPLSENEISEKIKVNIKLAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|150403662|ref|YP_001330956.1| excinuclease ABC subunit C [Methanococcus maripaludis C7]
 gi|150034692|gb|ABR66805.1| excinuclease ABC, C subunit [Methanococcus maripaludis C7]
          Length = 527

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/565 (28%), Positives = 270/565 (47%), Gaps = 53/565 (9%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           ++   +P+ PG Y   D +G V+YVGKA NL+KR+ SY +  NH  +   ++  I ++ F
Sbjct: 2   INISDIPKNPGCYIYKDESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEQLVKSIYDMEF 61

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  E+EAL+LE+ +IK+ +P++NI L+D K++ YI I+ +   P +   R+  + +G 
Sbjct: 62  IVTDNEIEALILESTLIKKYRPKYNIDLKDSKNYAYIYIS-EEDFPRIGISRN-KSEKGK 119

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           ++GPF S    +  ++ L++TF +RSC +       RPCL   IK C+ PC+G+I+S+ Y
Sbjct: 120 FYGPFTSAKERDYVLDVLKKTFKIRSCKNMH----KRPCLRHHIKNCTAPCSGDITSKDY 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
           +  + +A+  L G   +L  ++   M+  +    +E A++ R+ + A+  ++   +   +
Sbjct: 176 LNQIKKAEYVLKGNIDSLIHELKNEMDLKSKNLQFEEALVIREEINAVERLKTRQNVKRD 235

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D   +        +       G       F                FL Q+Y + 
Sbjct: 236 VKYNEDVIGILEKSGKIHMMVFNVLKGTLFDRKYFEFDYTEN-----FFEEFLIQYYLEN 290

Query: 298 PCPENILLSEEAEETSLLEISF---------FKQYGYKVKITVPKQGEKRKIIEQALINA 348
             P  I++S   +        +          ++ G KV   +P++GEK+++++ A+ N 
Sbjct: 291 EVPSEIIISSLPKNLEEESKDYNSDALLDYLSQKKGSKVAFKIPQKGEKKQLLDLAIKNL 350

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
                            ++    K  L   P+ IE +D SH+ G S V  MV        
Sbjct: 351 EIYVNGNEIK-------VESLKNKLMLDKPPEIIECFDISHLSGTSTVASMVQFRNGKPD 403

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YR+F +    V   DD   +  V+ RR+S+LI+    L              PD+++
Sbjct: 404 KKNYRRFKIKT--VSGIDDFKSISEVVFRRYSKLIEENLEL--------------PDLIV 447

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQLS+A   L+KL +  +I IISIAK  +     E +       L +   +    
Sbjct: 448 IDGGKGQLSSAFSELRKLKL--KIPIISIAKREE-----EIYAPGIENPLPIKKNEKASL 500

Query: 529 FIQRLRDEAHRFAITTHRKRRKKAA 553
           FIQ +RDEAHRFAI  +R  RKK  
Sbjct: 501 FIQEIRDEAHRFAINYNRLLRKKEL 525


>gi|21229392|ref|NP_635314.1| excinuclease ABC subunit C [Methanosarcina mazei Go1]
 gi|30173452|sp|Q8PRZ8|UVRC_METMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|20907983|gb|AAM32986.1| Excinuclease ABC, subunit C [Methanosarcina mazei Go1]
          Length = 523

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 179/556 (32%), Positives = 271/556 (48%), Gaps = 46/556 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  E +P  PG Y   D  G VLYVGKA +L+KR+ SY    +H  +   ++     + F
Sbjct: 8   IDLEALPHLPGCYLFKDEEGIVLYVGKAKDLKKRVSSYFQKRDHDPKTASLMQFARGLDF 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT TEVEA LLE  +IK+  PR+NI+L+D K +  I +T   K P +   R  +T +G 
Sbjct: 68  IVTNTEVEAFLLENTLIKKHWPRYNIMLKDSKRYACIHLT-GEKFPRIRIAR-KNTGEGE 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           +FGPF S    +     +++TF LR+C     +  +R CL + I  CSGPC   +S E+Y
Sbjct: 126 FFGPFVSARERDYIFEVVRKTFQLRTCR----KMPSRACLRYHIGACSGPCISSVSVEEY 181

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            E V +A   L G    L E +   M +   K+ +E A+  RD +AAL ++Q   +    
Sbjct: 182 GEKVKKAISVLKGNIRELIESMETEMKEMAAKQMFEQAMELRDEIAALEYLQEKQNMERQ 241

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +     N   +     + G       F      +      L  FL Q+Y++ 
Sbjct: 242 KKYDEDILNYIVRDNNVYLMLFKVYKGTLEDKQDFVFAFGED-----FLEEFLVQYYSEN 296

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             PE +++ E  +E+ +         G KVK+ VPKQG+K+++++  L N          
Sbjct: 297 DPPEELIVPEPLDESLV--EFLAHVKGKKVKVAVPKQGDKKELLDLVLKNVEIGFFGDRK 354

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                   L+    K +LP IP  IE +D SH+ G + VG MV        K+ YR+F  
Sbjct: 355 K-------LEALQSKLSLPKIPNVIECFDISHLSGTATVGSMVQFRGGRPDKHNYRRF-- 405

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V+  DD A +  V+ RR+S+L++++                 PD++I+DGGKGQLS
Sbjct: 406 KIESVEGIDDFASIAEVVRRRYSRLLEDK--------------HEMPDLIIIDGGKGQLS 451

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           +A   L+KL V  ++ IISIAK  +     E +       L +   +    F+Q +RDEA
Sbjct: 452 SAFQELRKLRV--KVPIISIAKREE-----EIYVPGLKSPLPIKKDEKASLFVQEIRDEA 504

Query: 538 HRFAITTHRKRRKKAA 553
           HRFAI  +R  R+KA 
Sbjct: 505 HRFAINYNRLLRQKAL 520


>gi|313673372|ref|YP_004051483.1| excinuclease abc, c subunit [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940128|gb|ADR19320.1| excinuclease ABC, C subunit [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 602

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 176/628 (28%), Positives = 295/628 (46%), Gaps = 46/628 (7%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           ++ +++P+ PGVY  +D  G++LYVGKA +L+KR+ SY +S+  + + T M+S  + +R+
Sbjct: 3   INLDEIPDNPGVYTFIDKNGKILYVGKAISLKKRLSSYFNSSPKSPKTTQMLSLAHEVRY 62

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T  E EALLLE N+IK  KP++NI L+D KS+PYI +T +     +   RD+S     
Sbjct: 63  IITTNEAEALLLENNIIKNEKPKYNIRLKDAKSYPYIKLTVEE-FQRIIITRDTSDKNAL 121

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF +V+ +   +N + + F +R+C+D +F+ + + CL +QIK+CSGPC   IS E Y
Sbjct: 122 YFGPFVNVNGLRGILNEILKIFPIRTCSDGIFKKK-KVCLNYQIKQCSGPCEEMISKEDY 180

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V E KK  +G    +KE +   M   +    +E A   RDR+ AL  +      + N
Sbjct: 181 EKLVDEVKKLFTGKVSEIKENLKEKMFNYSKNLLFEEAAKIRDRINALESLFTRQGVVIN 240

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F L  ++N   I + F   G+        +KT+    +   +S ++ Q Y+  
Sbjct: 241 DDRSFDIFILKEDQNFKIICSLFIRNGKLLS-----VKTEFIDDDDFDISLYILQLYSIT 295

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE-KRKIIEQALINAHRSHTQKL 356
             P   +     +          +         V       +KI+E  + N        L
Sbjct: 296 QQPPESIGIIVNDTLIKNSDPLIEAVYKTTGHKVSLIRSIDKKILEIGIENIEVEREFFL 355

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             + + +  L+              IE  D SH+ G + VG  V      F+K++YR++ 
Sbjct: 356 KKQDNLKNALEKLNSLTNCDVNT--IECVDISHLYGKNVVGASVCWSNGEFIKSRYRRYK 413

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +      T DD   +  ++ R+ + ++   E  +              D+ I+DGG GQL
Sbjct: 414 ITNE---TNDDFTAIYELMSRKANNILDGSEQKS--------------DLYIIDGGVGQL 456

Query: 477 SAAQGVLKKLNVENRITIISIAKG----PKRSAGMEKF----FVKKGEALVLNMRDPILY 528
           +AA    K+ NV   I  ISI+KG     +R    E         +   +     DP+L 
Sbjct: 457 NAALKAFKEKNVNAFI--ISISKGRGLKEQRFESEETIASIHLPNRKNPVKPKRNDPMLL 514

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTV--KMISRSS 585
            I+++RDE HRF I   RK  +K    S + ++ GIG  R + +L ++  +  + I   +
Sbjct: 515 LIEKIRDEVHRFVINYMRKSYEKILLKSGILDVEGIGEKRLKKILSTYPDILYREI---T 571

Query: 586 PETLASIEGISKKIACKIYNHFHKNTSH 613
            E L+    +   I+ K+  +  K    
Sbjct: 572 KEELSKNCNLPLTISEKLIQYIKKIKDE 599


>gi|307721707|ref|YP_003892847.1| Excinuclease ABC subunit C [Sulfurimonas autotrophica DSM 16294]
 gi|306979800|gb|ADN09835.1| Excinuclease ABC subunit C [Sulfurimonas autotrophica DSM 16294]
          Length = 600

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/625 (27%), Positives = 293/625 (46%), Gaps = 48/625 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             +Q+P+ PG+YQ  D  G +LYVGKA NL  R+KSY         S+  + RI  MI+Q
Sbjct: 6   KIQQLPDKPGIYQYFDKNGHLLYVGKAKNLANRVKSYWQFTPELCASSQLSLRIKKMINQ 65

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
             ++ + +  +E +AL+LE ++IK+L P++NILLRDDK++PYI I +    P     R  
Sbjct: 66  TVSMNYIIVNSEHDALILENSLIKQLGPKYNILLRDDKTYPYIYIDNSQDYPRFDITRKI 125

Query: 115 ST-IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                 +Y+GP++        ++S+     L            + CL +QI +C GPC  
Sbjct: 126 IRSKDITYYGPYS--VGARDILSSIYDICKLVQKK--ACLKSKKLCLYYQIDKCLGPCEL 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            +S E+Y + V+ A   +      L +   +    A  +  +E A   RD +  +     
Sbjct: 182 PVSKERYAQEVNLATSLIKNKKLLLSKLQEKMEFYA-EELRFEEAAQLRDTMERIERSHI 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
            ++  +      D F++  ++  A +   F   G+   +   ++  +      ++ S  L
Sbjct: 241 KSEIDFATNENYDIFAIESSQTRAVVVKIFMRHGKIISSTHEYINLNEGLDTNELYSRAL 300

Query: 291 RQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
             FY D+  P    +L+ E+ E+  L++      +  K +I +P++G+K+ +I  A +NA
Sbjct: 301 LGFYKDEKPPIVVPLLIGEDFEDKELIQNYLTNIFEQKAQIIIPQRGKKKDLIALAKLNA 360

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
                 K   E  +  IL++  +   L  +P R+E++DNSH+ G + VG M+V     F 
Sbjct: 361 TE--LLKRDKETLNTKILQEVQELCQLQKLPNRVEVFDNSHMSGVATVGAMIVYENGKFD 418

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YR ++L       +D+   MR  L +                + + +S  S PD+ I
Sbjct: 419 KKSYRTYHL-----DARDEYGQMRETLTK----------------RVESFSKSSPPDLWI 457

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRD 524
           LDGG   L  A  +L+   +   +  IS     AK  +     +     + E   L   D
Sbjct: 458 LDGGATLLKLAVDILQSNGINLDVIAISKEKVDAKAHRAKGKAQDIIYTRDEVFRLKTSD 517

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             L +IQ LRDEAHR AIT H+K + K    S L  ++GI P + + LL  +GT + +  
Sbjct: 518 KRLQWIQNLRDEAHRAAITFHKKTKLKLDQESKLLSLHGISPAKIQKLLNHYGTFEALKN 577

Query: 584 SSPETLASIEGISKKIACKIYNHFH 608
            + + ++S+  ++ K A  I N + 
Sbjct: 578 VTFDDISSL--LNTKDAKTIKNFYK 600


>gi|119367674|sp|Q7NBC4|UVRC_MYCGA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 592

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/614 (26%), Positives = 281/614 (45%), Gaps = 34/614 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +  P+ PG Y   +    ++Y+GKA N+ KR+  Y +      + + ++++I  + F 
Sbjct: 8   KLDLAPKKPGCYLWKNHLNEIIYIGKAKNIYKRVHQYFNGP-KDLKTSKLVNEIFYVEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
               E EALLLEAN+IK+ KPR+NILL+D+  +PYIL+T K K P L   R+    +G +
Sbjct: 67  EVNNENEALLLEANLIKKHKPRYNILLKDNNGYPYILMT-KEKYPRLIYTRNFDPKKGKH 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPFAS +   K  +       L     + F  + R C  + +  C   CT E+S   Y 
Sbjct: 126 YGPFASSEM--KAYDLYNLLLKLFPLK-NCFNKKGRKCEFYDLNLCMKACTHEVSEADYE 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
               +   F   G   + + +    + A+ K D+E A  + D   A++ I +        
Sbjct: 183 VMKKKIDYFFHNGADQVLKDLKEKESIASEKFDFEQAKKYLDLQKAINLIFDKQIINLYS 242

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
              R+D  +    +N+ CI    +   Q     T       E    ++++ +L Q+Y D 
Sbjct: 243 AKERIDVLAYQIKENVICIVLFSYVSSQLVSKNTICDFYYGEE--QEVITSYLSQYYKDN 300

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ +  S +    +LL+ S   +        + +        +       + +   + 
Sbjct: 301 IKPKILYASLDQANATLLKDSLGIEIINPTSGKMNEIMSLAL--QNVTNELSQKYDSLVK 358

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            E    + L    K   +  +   +E+YDNS++     V  M+V   N F K +YRK+ +
Sbjct: 359 KEQRINLALDQLKKLIKVDKLNH-LEVYDNSNLFNTDKVSAMIVFENNQFNKKKYRKYKI 417

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                    D   M  V+ RR  Q +KN             +F   PD++ILDGGK Q+ 
Sbjct: 418 KDQQALG--DYHYMYEVIYRRLYQALKN-------------NFVDLPDLIILDGGKHQVL 462

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
           AA+  +  L ++ +I +I +AK  K     +K      + + L+    + +F+  L++E 
Sbjct: 463 AAKKAIVDLQIDKKINLIGLAKNNKHQT--DKIVTFDLDEISLDKSSALYFFLANLQEEV 520

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           H+FAI+  RK + K+ Y S LD+I G+G  RK+ L++ F T+  I ++S  +L+ +  + 
Sbjct: 521 HKFAISFFRKTKAKSLYDSILDQIKGLGKKRKQQLIEHFKTIDEIKKASIASLSQV--LP 578

Query: 597 KKIACKIYNHFHKN 610
            +IA K+     ++
Sbjct: 579 IEIAKKLKQKLDQS 592


>gi|299137105|ref|ZP_07030288.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX8]
 gi|298601620|gb|EFI57775.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX8]
          Length = 699

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/685 (20%), Positives = 264/685 (38%), Gaps = 84/685 (12%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--THRITHMISQINNIR 59
               +P   G Y   +  G V+YVGKA NL+ R++SY    N   + +   ++ +  +I 
Sbjct: 6   KIRTLPTGAGCYLYKNAEGEVIYVGKAKNLRARVRSYFLEANQLASAKTGSLMREAVDIE 65

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119
           + +   E EAL LE N+IK+ KPRFNILLRDDK++PYI +T   + P ++  R       
Sbjct: 66  YILVANEREALALENNLIKQRKPRFNILLRDDKTYPYIKLTLTDRHPKVFVTRKLRKDGS 125

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSE 178
           +YFGP+   +   + ++ + R+F + SC   + R+  R CL + IKRC GPC    +S+E
Sbjct: 126 AYFGPYFPGNLAHRLVDVIHRSFLIPSCKVDLNRYHPRACLQYYIKRCLGPCVEGFVSTE 185

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + + + + FL G    L+ ++   M  A     +E A   RD+L  +S  Q+     
Sbjct: 186 EYRQAIRDVQLFLEGKPSELEARLTERMTAAAENMQFELAARLRDQLITVSQAQDRQRIA 245

Query: 239 YNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ--ILSYFLRQF 293
                  D F  +   ++  +       G+       F +   E              + 
Sbjct: 246 STDDEDADVFGFHFENDMLAVNLFHMRAGKIVDRRDLFWEDLPELDLPASLRSEEVEPEL 305

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
             D   P   +  + +       ++   +        + +  ++  +  +    A  S +
Sbjct: 306 EPDPSVPAPEITEDNSITEEHSIVASPFEADQPHGEVIAEACDEPTLATRYSQLAAGSPS 365

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSH---------------------IMG 392
           Q   +  +    L                   D                          G
Sbjct: 366 QSTFSPAAFFSALLKQLYLDQGYVPKHIYVPVDFPDRVLLAEILRERTGHKIEIAAPQRG 425

Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD------------------CAMMRMV 434
                  +V       ++  ++F +    +K   +                         
Sbjct: 426 DKRSLVDLVCQN--AKQSYDQRFRVLQPSIKNMQEALQEALTLAEPPERIECFDISHIQG 483

Query: 435 LERRFSQLIKNEENLNFHPKKQ-EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRIT 493
            E   S ++  +  +     ++ +    +  D              +    K  + + I 
Sbjct: 484 AETVASMVVWEKGVMKKADYRKFQVKTVTGVDDFASMREIIHRRYKRLNENKEPLPSLIL 543

Query: 494 I----------------ISI--------AKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           I                I +        AK  +          ++ + +VL+ R P+L+ 
Sbjct: 544 IDGGLGQLHAAAQALTEIGLTTQPLASIAKREEIIY----VHGQEDDPVVLDRRSPVLHV 599

Query: 530 IQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---S 585
           IQ++RDE+HRFA+T HRKRR+ +   S LD+I G+G + ++ LL+ FG+V+ + ++   +
Sbjct: 600 IQKIRDESHRFAVTYHRKRRQMRDRTSELDDIPGVGTITRQRLLEHFGSVRALKQAAEKN 659

Query: 586 PETLASIEGISKKIACKIYNHFHKN 610
           P+ L S+  ++K  A KI   F + 
Sbjct: 660 PDALLSV--VNKATAEKIRQFFTEE 682


>gi|255322445|ref|ZP_05363590.1| excinuclease ABC, C subunit [Campylobacter showae RM3277]
 gi|255300353|gb|EET79625.1| excinuclease ABC, C subunit [Campylobacter showae RM3277]
          Length = 604

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 177/628 (28%), Positives = 278/628 (44%), Gaps = 53/628 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQINN 57
            +P  PGVYQ  D AG++LYVGKA  L+ R+KSY         S   + RI  MIS+  +
Sbjct: 8   SLPAKPGVYQYFDKAGKLLYVGKAKILKNRVKSYFSFTPELAPSPKVSPRIHKMISEAVH 67

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           + + VT +E +AL+LE + IK+L+P++NILLRDDK++PYI +      P     R     
Sbjct: 68  LEYIVTPSEADALILENSFIKQLRPKYNILLRDDKTYPYIYVNLDEDFPRFEITRKIVRG 127

Query: 118 QG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
           +   YFGP+     V + +++L+ +F L     ++    T   L +QI     P   +IS
Sbjct: 128 KNIKYFGPY--FRGVRELLDALRLSFKLVQSKSAL--KATGAYLPYQIGYSEAPLISKIS 183

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
              Y + V  A   L+     L + +   MN+    E+YE A + RD++ A+  +    +
Sbjct: 184 PADYAKVVESAIAALNNPLSMLPK-LVNLMNKYAQNENYEQAALVRDKINAIKDLDVKIE 242

Query: 237 SIYNRMDCFSLYHN--KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
               +++ F ++    +        F   G         +     S+   +   + +   
Sbjct: 243 VDLAKLEDFEVFAVGAEQNLLCAVRFSVHGGKISGVYQNITNAKMSSQGDLNDAYKQIVL 302

Query: 295 TDKP-----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
              P         I   E  E+ SL+E     ++G K  I+VPK GEK++I E AL NA 
Sbjct: 303 ESFPAGAPVVSAKIYTLEAFEDASLVEEILTARHGRKFSISVPKIGEKKRICEMALTNAQ 362

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
               + L  +      L +  + F L   P  IE +DNSH+ G +AVG MV      F K
Sbjct: 363 VFIQKYL--KTHDDAFLDELKEYFGLACAPHVIETFDNSHMFGAAAVGAMVRFEHGNFAK 420

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YR  +L        D   M +M+ ER                    +   S PD+ ++
Sbjct: 421 EHYRHMHLS----HANDYDQMRQMLTERALR-----------------FDKLSPPDLWLI 459

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           DGG+  L  A  ++        I  IS     AK  +   G             L + D 
Sbjct: 460 DGGQALLDLASDIIASSGANVDILAISKEKIDAKAHRAKGGARDKIYASSGVFTLPVGDR 519

Query: 526 ILYFIQRLRDEAHRFAITTHRK-RRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
            L F QRLRDEAHRFAIT H+K +RK+    S L +  G+       L++ +G+ + I  
Sbjct: 520 RLQFFQRLRDEAHRFAITFHQKTKRKEDLGASKLAD-AGVSAGSIAKLVKFYGSFEAIMT 578

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNT 611
           ++ E +  +   ++ +A KI     ++ 
Sbjct: 579 ATSEEIEKVT--NRSVAAKI-EQLKESE 603


>gi|223040233|ref|ZP_03610511.1| excinuclease ABC, C subunit [Campylobacter rectus RM3267]
 gi|222878486|gb|EEF13589.1| excinuclease ABC, C subunit [Campylobacter rectus RM3267]
          Length = 604

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 178/628 (28%), Positives = 277/628 (44%), Gaps = 53/628 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQINN 57
            +P  PGVYQ  D AG++LYVGKA  L+ R+KSY         S     RI  MIS+  +
Sbjct: 8   SLPAQPGVYQYFDKAGKLLYVGKAKILKNRVKSYFSFTPSLAPSPKLGPRIHKMISEAVH 67

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST- 116
           + + VT +E +AL+LE + IK+L+P++NILLRDDK++PYI +      P     R     
Sbjct: 68  LEYIVTPSEADALILENSFIKQLRPKYNILLRDDKTYPYIYVNLDEDFPRFEITRKIVRG 127

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
               YFGP+       + +++L+ +F L     ++    T   L +QI     P   +IS
Sbjct: 128 KNVKYFGPY--FRGARELLDALRLSFKLVQSKSAL--KATGAYLPYQIGYSEAPLISKIS 183

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
              Y + V  A   L+     L + +   MN+    E+YE A + RD++ A+  +    +
Sbjct: 184 PADYAKVVEGAIAALNNPLSMLPK-LVNLMNKYAQNENYEQAALVRDKINAIKDLDVKIE 242

Query: 237 SIYNRMDCFSLYHN--KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
               +++ F ++    +        F   G         +     S+   +   + +   
Sbjct: 243 VDLAKLEDFEVFAVGAEQNLLCAVRFSVHGGKISGVYQNITNAKMSSQGDLNDAYKQIVL 302

Query: 295 TDKP-----CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
              P         I   E  E+ SL+E     ++G K  I+VPK GEK++I E AL NA 
Sbjct: 303 ESFPAGAPVVSAKIYALEAFEDASLVEEILTARHGRKFSISVPKIGEKKRICEMALANAQ 362

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
               + L  +      L +  + F L   P  IE +DNSH+ G +AVG MV      F K
Sbjct: 363 VFIQKYL--KTHDDAFLDELKEYFGLACAPHVIETFDNSHMFGTAAVGAMVRFEHGNFAK 420

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YR  +L        +D   MR +LE R  +  K                 S PD+ ++
Sbjct: 421 EHYRHMHL-----SHANDYDQMRQMLEGRALRFDK----------------LSPPDLWLI 459

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           DGG+  L  A  ++        I  IS     AK  +   G             L + D 
Sbjct: 460 DGGQALLDLATDIIASSGANVDILAISKEKIDAKAHRAKGGARDKIYASSGVFTLPVGDR 519

Query: 526 ILYFIQRLRDEAHRFAITTHRK-RRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
            L F QRLRDEAHRFAIT H+K +RK+    S L +  G+       L++ +G+ + I  
Sbjct: 520 RLQFFQRLRDEAHRFAITFHQKTKRKEDLGASKLAD-AGVSAGSIAKLVKFYGSFEAIMT 578

Query: 584 SSPETLASIEGISKKIACKIYNHFHKNT 611
           ++ E +  +   ++ +A KI     ++ 
Sbjct: 579 ATSEEIEKVT--NRSVAAKI-EQLKESE 603


>gi|319790154|ref|YP_004151787.1| excinuclease ABC, C subunit [Thermovibrio ammonificans HB-1]
 gi|317114656|gb|ADU97146.1| excinuclease ABC, C subunit [Thermovibrio ammonificans HB-1]
          Length = 586

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 270/605 (44%), Gaps = 32/605 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++PE PGVY   D AG+VLYVGK+ NL++R+ +++++ +   +   ++    +  + 
Sbjct: 4   KLKEVPELPGVYLFKDSAGKVLYVGKSKNLRERLSTHLNATDPNDKSYRIVRASADFDYI 63

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V   E EAL LEA +IK   P FN+LL+D KS+PY+++T   + P +   R S +  G  
Sbjct: 64  VVRNEREALALEAELIKEHLPPFNVLLKDGKSYPYLVVT-DEEFPTVKVVRRSFSGGGER 122

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF    +       L R F LRSC +   + R +PCL + I+RC+ PC G +S ++Y 
Sbjct: 123 FGPFVPPKSAYNLRELLTRLFRLRSCKE--LKKRDKPCLQYHIERCTAPCAGLVSKKEYR 180

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + V  A +FL G    L  ++   + +A  K ++E A   RD+L A+  +   +  ++  
Sbjct: 181 KQVERALRFLKGDVKGLISELHSEIEEAAEKLEFERAARLRDQLIAVKAVFEKSAPLFEE 240

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
                +++ +    +   F            + K              L          +
Sbjct: 241 FKECDIFYLEERGEL---FTGVKLTVRGGIIYGKESFHLDPVDPWDEGLLSSVFSLGVEK 297

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
             + +                 G K+       G+         +       ++  +   
Sbjct: 298 LDVNTVGTMWLKAYYGEEGVPAGVKLLANFKPLGDYEVHPIPEELLPLLRRNRRAVSYSL 357

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+   ++     +P R+E +D S + G + V   VV  +  F K++YR+F +    
Sbjct: 358 SLKELEREFEEVFGEPLPLRVECFDISTLQGEATVASCVVWEKGQFKKDEYRRFKVKS-- 415

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
           V   DD A M  VL RRF ++ + E                 PD+VI+DGG GQL+ A  
Sbjct: 416 VSGVDDYASMEEVLTRRFRRIKRGE--------------VKEPDLVIVDGGIGQLNVALK 461

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           V     +  R  + SIAK        E  +   GE +       +  F   +RDEAHRFA
Sbjct: 462 VRDTFGLGFR--VFSIAKRE------EVVYTDLGEVVETKRFPHLFRFFTSIRDEAHRFA 513

Query: 542 ITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           ++ +RK R  K  +S L  + GIGP R+ L+ + +  +  ++  SP  LA + GI  K+A
Sbjct: 514 LSYNRKLRTDKMLHSFLSSVKGIGPKRRALIEKLYPDLSELAAVSPSELAKL-GIPLKVA 572

Query: 601 CKIYN 605
            ++  
Sbjct: 573 REVVE 577


>gi|45358291|ref|NP_987848.1| excinuclease ABC subunit C [Methanococcus maripaludis S2]
 gi|74555013|sp|Q6LZA1|UVRC_METMP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|44921049|emb|CAF30284.1| excinuclease ABC subunit C [Methanococcus maripaludis S2]
          Length = 527

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/565 (29%), Positives = 266/565 (47%), Gaps = 53/565 (9%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           ++   +P+ PG Y   + +G V+YVGKA NL+KR+ SY +  NH  +   ++  I  + F
Sbjct: 2   INISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEF 61

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  EVEAL+LE  +IK+  P++NI L+D K++ YI I+ +   P +   R+ S     
Sbjct: 62  IVTDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYIS-EENFPRIGISRNKSKKG-K 119

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           ++GPF S    +  ++ L++TF +RSC +       RPCL   IK C+ PC+G+I+S+ Y
Sbjct: 120 FYGPFTSAKERDYVLDVLKKTFKIRSCKNMH----KRPCLRHHIKNCTAPCSGDITSKDY 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
           +  + +A+  L G   +L  ++   MN+ +    +E A++ R+ + A+  ++   +   +
Sbjct: 176 LNQIKKAEHILKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRD 235

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  S+        I       G       F                FL Q+Y++ 
Sbjct: 236 VKYNEDVISILEKSGKLHIMVFNVLKGTLFDRKYFEFDYTEN-----FFEEFLIQYYSEN 290

Query: 298 PCPENILLSEEAEETSLLE---------ISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
             P  I++SE  +                   K+ G KV   +PKQGEK+++++ A+ N 
Sbjct: 291 DVPSEIIISELPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAIKNL 350

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
                       S          K  L   P  IE +D SH+ G S VG +V        
Sbjct: 351 EIYVNGNEIKVQS-------LKNKLMLDKSPNIIECFDISHLSGTSTVGSVVQFRNGKPD 403

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YR+F +    V   DD   +  V+ RR+S+L++                   PD++I
Sbjct: 404 KKNYRRFKIKT--VSGIDDFKSISEVVFRRYSKLLEEN--------------LELPDLII 447

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQLS+A   L+KL +  +I +ISIAK  +     E +       L +   +    
Sbjct: 448 IDGGKGQLSSAFSELRKLKL--KIPLISIAKREE-----EIYTPGIENPLPIKKNEKASL 500

Query: 529 FIQRLRDEAHRFAITTHRKRRKKAA 553
           FIQ +RDEAHRFAI  +R  RKK  
Sbjct: 501 FIQEIRDEAHRFAINYNRLLRKKEL 525


>gi|26553580|ref|NP_757514.1| excinuclease ABC subunit C [Mycoplasma penetrans HF-2]
 gi|81748060|sp|Q8EWS6|UVRC_MYCPE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|26453586|dbj|BAC43918.1| excinuclease ABC subunit C [Mycoplasma penetrans HF-2]
          Length = 589

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 161/610 (26%), Positives = 282/610 (46%), Gaps = 35/610 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P  PG Y   D  G V+YVGKA +L  RIK Y   +    +   + ++I ++ + 
Sbjct: 8   KLKKIPHKPGCYLWKDKNGIVIYVGKAVDLANRIKQYFLKDR-DLKTKKLANEICDVDYV 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK-HRDSSTIQGS 120
           V   E E+LLLE N+I + KP++N+LLR+  +FPYIL+T K + P +   H  +  I+G+
Sbjct: 67  VVNNENESLLLENNLIAKYKPKYNMLLRESNAFPYILVT-KEEHPRILYSHDSTKKIKGT 125

Query: 121 YFGPFASVDAVE-KTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           Y+GPFA+ +  + +  N + R F LR C     +   + C+ + I +C GPC  +++ + 
Sbjct: 126 YYGPFANSNIKKYELYNFINRIFPLRKCN----KLPNKKCIYYDIGQCLGPCIKKVTRQD 181

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y  ++ E   F SG + ++ E++ +   QA  K  +E +  + +    L       D I+
Sbjct: 182 YEPYLKEINDFFSGKSKSIDEQLEKKEIQAAEKLMFEDSQKYLELRKNLKMFSERQDIIF 241

Query: 240 ---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
              N  D    Y  +N+  I    +  G             SE     +   +       
Sbjct: 242 SQKNDEDIIGFYCKENVISIVIFKYVNGSLLSKYDLITVFYSELDEILLTLIYEYYSKIA 301

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ + LS    +  L  +S   +  +       K+         A+      + Q +
Sbjct: 302 IELPKTVYLS--LSDEKLKTLSESLKIKFLNPSKGVKKDVMDTAFNNAVEIMKNKYLQLI 359

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           S +      L++  K   +     R+EI+DNS+I   + VG MVV       KN+YRKFN
Sbjct: 360 SNQNRELNSLEELQKLLDIK-DLYRMEIFDNSNIFNTNKVGAMVVYENGVKNKNEYRKFN 418

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +         D   M+ V+ RR+                   SF   P+++I+DGGK Q+
Sbjct: 419 IKDE--DANSDYDYMKEVIYRRYK--------------NNTASFGEIPNLIIVDGGKPQV 462

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
            AA   LK L +++ I +I +AK  K     ++        + L+ +  + +F+  ++DE
Sbjct: 463 KAALESLKFLELDSIIPVIGLAKDDKHKT--DRIVKWDFSEIKLDKKSDLYFFLLNIQDE 520

Query: 537 AHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            HRFAI+ +R ++ K+ + + L +I  +G  R   LL+ + T+  I  +S E L+ I  +
Sbjct: 521 VHRFAISFYRNKKSKSLFENSLYKIKNLGKTRIEKLLEKYETLDKIKEASVEELSQI--V 578

Query: 596 SKKIACKIYN 605
             ++A +I  
Sbjct: 579 PIEVAKEIKK 588


>gi|222823523|ref|YP_002575097.1| excinuclease ABC, subunit C [Campylobacter lari RM2100]
 gi|222538745|gb|ACM63846.1| excinuclease ABC, subunit C [Campylobacter lari RM2100]
          Length = 597

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 183/628 (29%), Positives = 302/628 (48%), Gaps = 57/628 (9%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P  PGVYQ  DI G++LYVGKA NL+ R++SY +       + N++ RI  MISQ
Sbjct: 5   ELKTLPNLPGVYQYFDIQGKLLYVGKAKNLKNRVRSYFNFTPNLCPNPNNSLRIQKMISQ 64

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-D 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI I      P     R  
Sbjct: 65  TYHLEFITTKSEADALILENSFIKQLHPKYNILLRDDKTYPYIYIDLNEDFPRFEITRKI 124

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF      ++ +N+L  +F LR             CL +QIKRC GPC  
Sbjct: 125 IKKNKIKYFGPF--FKGAKELLNALYLSFELRQKKSC-----KELCLFYQIKRCKGPCEQ 177

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +IS ++Y + V +A + L      + + +   M +    E+YE A   RD++  +  +  
Sbjct: 178 KISKQEYEKIVQKATQALLNPLSLI-KNLENKMLEYAKNENYEEAATIRDQIKTIEDLSV 236

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL---KTDSESTNAQILS 287
                       D F+++H  N+  +     + G+   +    L     D    NA    
Sbjct: 237 KIQIDLAKLEDFDVFAIHHKANILSMVRFVINNGRIISSNHKVLTLNHQDEFDLNAIYKQ 296

Query: 288 YFLRQFYTDKPCPENILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
           Y L  +  D P     + +  E E+ +LL+    +++  K  +  PK GEK+ + E AL 
Sbjct: 297 YILENYTQDSPINSTRIYTHEEFEDMNLLQNLLSERFSKKFHLKTPKLGEKKALCELALE 356

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +  + L ++    + LK+  + F L + P  IEI+DNSH+ G + VG +V   +  
Sbjct: 357 NAKINIQKHLRSDD--YLFLKELKEFFNLQNYPNYIEIFDNSHMQGEANVGALVAYKDGK 414

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           F K+ YR ++L   +            +L+    + +              +     PD+
Sbjct: 415 FDKSSYRHYHLSYKND--------YDQMLQTLSKRAL-------------SFDKKPPPDL 453

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS-----AGMEKFFVKKGEALVLN 521
            ++DGG   L  A  ++K       I  IS  K   ++     +  +K + ++G+ + L+
Sbjct: 454 WLIDGGDALLKLANDIIKSSGANVDILAISKEKIDAKAYRAKGSAKDKIYTQEGK-IQLS 512

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVK 579
             D  L F+Q+LRDEAHRFAI+ H+K +RK+    S L ++ GI     +  L  +G+  
Sbjct: 513 TDDKKLQFLQKLRDEAHRFAISFHQKTKRKQDLQNSRLIQL-GISQGYIKKFLDYYGSFD 571

Query: 580 MISRSSPETLASIEGISKKIACKIYNHF 607
            IS++S + L ++   + KIA  I  + 
Sbjct: 572 EISKASFDELKTLS--NTKIAKLIKENL 597


>gi|224534778|ref|ZP_03675350.1| excinuclease ABC subunit C [Borrelia spielmanii A14S]
 gi|224514026|gb|EEF84348.1| excinuclease ABC subunit C [Borrelia spielmanii A14S]
          Length = 598

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 165/605 (27%), Positives = 281/605 (46%), Gaps = 32/605 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G Y+ML+   ++LY+GKA NL+ RIKSY      + +I  ++  + +I    T 
Sbjct: 14  KLPTTSGCYKMLNENKKILYIGKAKNLRSRIKSYFLEK-KSQKIKILMKNVKSIEVITTN 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK  KP +N+ L+D K +P I IT   K P ++K R     Q  YFGP
Sbjct: 73  SEYEALLLECNLIKTHKPDYNVKLKDGKGYPMIRIT-HEKYPRIFKTRKIINDQSEYFGP 131

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F +V  +++ ++ + +TF +R C     +    PC+ + + +C G C  E   ++Y E +
Sbjct: 132 FTNVKKLDQVLDLINKTFKIRKCK----KKSNAPCMYYHMGQCLGVCYKENLEKEYQEEL 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
            +AK  L+G    +  +I   +  A  KED+E+AI  ++  ++L  I             
Sbjct: 188 DKAKSILNGNISEILSQIDIKLKLAIQKEDFETAIKLKEIKSSLIEITQIQIVAKTNNLN 247

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            D   ++  +++  I    +  G+       F ++  +     +          +   P+
Sbjct: 248 TDYVYVHPGEHVNTIIVLKYRNGKLVERDANFDESICKKNELVLQFLIQYYTSINMIVPD 307

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I +  +   T   E    +    K +I   +  E  KI+E A+ NA  S  +    E  
Sbjct: 308 KIHIFLKDVNTKNAEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENK 364

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
               L+       +  +PK IE +D +H+ G   V  MV        K  Y+ + L+   
Sbjct: 365 SNKALESLKICLEMDKLPKIIEGFDIAHLKGKETVASMVTFKMGIPFKEHYKLYKLNSLS 424

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   ++ V+ RR+S++I                    P+++++DGGKGQL+AA  
Sbjct: 425 KGEIDDFKAIKEVILRRYSEIIN--------------KNLELPNLILIDGGKGQLNAAFS 470

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +LK L +EN + + S+AK  +       F     + + L    P L  +Q +RDEAHR A
Sbjct: 471 ILKGLKIENNVKVCSLAKKHET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKA 525

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              ++KRR+K       +I+GIG    + +L+S GT K I   S   ++    ++ +IA 
Sbjct: 526 NEFNKKRREKITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSECEISKKIKVNIEIAK 584

Query: 602 KIYNH 606
           +I   
Sbjct: 585 RIKEF 589


>gi|313903594|ref|ZP_07836984.1| excinuclease ABC, C subunit [Thermaerobacter subterraneus DSM
           13965]
 gi|313466147|gb|EFR61671.1| excinuclease ABC, C subunit [Thermaerobacter subterraneus DSM
           13965]
          Length = 791

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 222/469 (47%), Gaps = 13/469 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
            +PE PGVY   D  G+VLYVGKA +L++R++SY  S+ H   RI  M+ +   + F VT
Sbjct: 89  DLPEQPGVYLFKDAQGQVLYVGKARSLRQRVRSYFQSSRHLPARIQRMVERAAALEFIVT 148

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EVEAL+LE  +IKR +PR+N+ LRDDK++PY+ +      P +   R        YFG
Sbjct: 149 RNEVEALVLENTLIKRYRPRYNVRLRDDKTYPYLKVHVHEDWPRVSIARQVQDDGARYFG 208

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+    ++++ +  ++R F  RSC+D   R   RPCL + I RC  PC      ++Y   
Sbjct: 209 PYTHSASLQEALRLIRRVFPYRSCSDHRLRRGGRPCLHYYIGRCLAPCAALCDRDRYDAM 268

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM- 242
           + +   FL G +  + E++   M  A  + ++E A   RD+L AL  +         R  
Sbjct: 269 IRDLIAFLEGRSREVLERVEAEMQSAAARWEFERAAELRDQLRALHQVLEQQQVASPRRA 328

Query: 243 --DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299
             D   +    + A  Q  F   G+  G     +       + ++L+ FL Q+Y      
Sbjct: 329 EEDAIGIARQGDRAHAQVFFVREGRIIGREQLSMTGVDGLDDGELLAAFLTQYYGRATFV 388

Query: 300 PENILLSEEAEE--TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHT 353
           P  ILL  E       ++     ++ G +V++  P++G KR+ +E A  NA     ++ T
Sbjct: 389 PREILLPAELPPGEAEVIGRWLSQRRGVQVRLHRPQRGTKRRWVELAEHNARLLLAQAET 448

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
                +   +  L++  +   L   P+RIE YD S+  G   VG MVV+      K +YR
Sbjct: 449 DDQVRQDRARRALEELARYLDLDEPPRRIECYDISNFQGAQPVGSMVVMIRGEPAKAEYR 508

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462
           +F +    V+  +D A M+ VL RR  + ++ +                
Sbjct: 509 RFRIRT--VEAPNDFASMQEVLYRRLRRGLEAQGVPVEGDVPSTAGAGE 555



 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 104/168 (61%), Gaps = 9/168 (5%)

Query: 444 KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503
                       +   F   PD++++DGGKGQLSAAQ VL +L + + I + ++AK    
Sbjct: 606 AGRTPAGDPGAAELRGFADLPDLILIDGGKGQLSAAQEVLDRLGLVD-IPVFALAKR--- 661

Query: 504 SAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEIN 561
               E  +   + + +V+    P L+ +QR+RDEAHRFA++ HR+ R++A  +S L+E+ 
Sbjct: 662 ---FELVYAPDRPDPIVIPRDSPALHLLQRIRDEAHRFALSYHRQLRQRAGLHSVLEELP 718

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           GIGP R++ LL++FG+++ I+R+S + LA++ G+++  A  +Y  FH+
Sbjct: 719 GIGPRRRKALLEAFGSLEAIARASEDELAAVPGMNRAAARTVYRAFHR 766


>gi|208434735|ref|YP_002266401.1| excinuclease ABC subunit C [Helicobacter pylori G27]
 gi|226698353|sp|B5Z7I6|UVRC_HELPG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|208432664|gb|ACI27535.1| excinuclease ABC subunit C [Helicobacter pylori G27]
          Length = 594

 Score =  366 bits (939), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 166/608 (27%), Positives = 279/608 (45%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +P   GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSICNNEITPNHRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDK-PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y    P     +L       +L E       QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLIPEQILLNACSNEALKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   N F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEVRSLFNLECVPYRVEIFDTSHHANSQCVGGMVVYENNEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K+ YR+++L        ++ A M  +L RR     K                   P++ 
Sbjct: 421 QKDSYRRYHLK-----GSNEYAQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|159904551|ref|YP_001548213.1| excinuclease ABC subunit C [Methanococcus maripaludis C6]
 gi|159886044|gb|ABX00981.1| excinuclease ABC, C subunit [Methanococcus maripaludis C6]
          Length = 527

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 167/562 (29%), Positives = 276/562 (49%), Gaps = 47/562 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           ++   +P+ PG Y   +++G V+YVGKA NL+KR+ SY +  NH  +   ++  I ++ F
Sbjct: 2   INISDIPKNPGCYIYKNVSGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEQLVKSIYDMEF 61

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  EVEAL+LE  +IK+  P++NI L+D K++ YI I+ +   P +   R+  + +G 
Sbjct: 62  IVTDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYIS-EEDFPRIGISRN-KSEKGK 119

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           ++GPF S    +  ++ L++TF +RSC +       RPCL   IK C+ PC+G+I+S+ Y
Sbjct: 120 FYGPFTSAKERDYVLDVLKKTFKIRSCKNMH----KRPCLRNHIKNCTAPCSGDITSKTY 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
           +  + +A+  L G   +L E++   M++ +    +E A++ R+ + A+  ++   +   +
Sbjct: 176 LNQIKKAEHVLKGHIDSLIEELKIEMDKKSKNLQFEEALVIREEINAIERLKIRQNVKRD 235

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
                 +       C +     F   +GT       + + T       FL Q+Y +   P
Sbjct: 236 VKYNEDVISTLEK-CEKIHIMVFNVLKGTLFDRKYFEFDYTEN-FFEEFLIQYYLENEVP 293

Query: 301 ENILLSEEAEETSLLEISF---------FKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
             I+LS+  +        +          ++ G KV   +PKQGEK+++++ A+ N    
Sbjct: 294 SEIILSDLPKNLEEDTKEYNSDALLEYLSQKKGSKVAFKIPKQGEKKQLLDLAIKNLEIY 353

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                         ++    K  L   P  IE +D SH+ G S V  MV        K  
Sbjct: 354 VNGNEIK-------VESLKNKLMLDKRPSVIECFDISHLSGTSTVASMVQFRNGKPDKKN 406

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF +    V   DD   +  V+ RR+S+LI+    L              PD++++DG
Sbjct: 407 YRKFKIKT--VSGIDDFKSISEVVFRRYSKLIEENLEL--------------PDLIVIDG 450

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           GKGQLS+A   L+KL +  +I +ISIAK  +     E +       L +   +    FIQ
Sbjct: 451 GKGQLSSAFSELQKLKL--KIPLISIAKREE-----EIYAPGIENPLPIKKNENASLFIQ 503

Query: 532 RLRDEAHRFAITTHRKRRKKAA 553
            +RDEAHRFAI  +R  RKK  
Sbjct: 504 EIRDEAHRFAINYNRLLRKKEL 525


>gi|207092065|ref|ZP_03239852.1| excinuclease ABC subunit C [Helicobacter pylori HPKX_438_AG0C1]
          Length = 594

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 170/608 (27%), Positives = 281/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +P   GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + R+  M+ Q
Sbjct: 8   LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNDEITPNHRASLRVQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYSKIAKECLEMIENKDRLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAV 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIETAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   N F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECVPYRVEIFDTSHHSSSQCVGGMVVYENNAF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        D+ A M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSDEYAQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP------KRSAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K        +   G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRAKGGAKDIIHTPSDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|254779206|ref|YP_003057311.1| excinuclease ABC subunit C [Helicobacter pylori B38]
 gi|254001117|emb|CAX29072.1| UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
           [Helicobacter pylori B38]
          Length = 594

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 168/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +P   GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEIMPNHRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ ++Y++   +  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKKEYLKIAKKCLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGGNNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ + +PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNEALKELQEFISHQYSKKIALNIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   N F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +      G    L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPGNTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|254458673|ref|ZP_05072097.1| excinuclease ABC, C subunit [Campylobacterales bacterium GD 1]
 gi|207084439|gb|EDZ61727.1| excinuclease ABC, C subunit [Campylobacterales bacterium GD 1]
          Length = 600

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 179/622 (28%), Positives = 291/622 (46%), Gaps = 52/622 (8%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQIN 56
           +Q+P+  G+YQ  D  G +LY+GKA NLQKR+KSY +       ++N + RIT MI Q  
Sbjct: 8   QQLPDSAGIYQYFDKNGHLLYIGKAKNLQKRVKSYFNFTPELKANSNLSLRITKMIKQTV 67

Query: 57  NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116
           ++ + V  +E +AL+LE ++IK+L P++NILLRDDK++PYI I +  K P     R    
Sbjct: 68  SMSYIVVNSEHDALILENSLIKQLNPKYNILLRDDKTYPYIYIDNSQKYPRFDITRKIIK 127

Query: 117 -IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
                YFGP++        ++S+     L            + CL  QI +C GPC   I
Sbjct: 128 AADIKYFGPYS--VGARDILDSVYELCKLVQKKG--CLKSKKLCLYHQIDKCLGPCELPI 183

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S  +Y + +  A + +      + + +   M        +E A   RDR+  ++  +  +
Sbjct: 184 SDARYKQELDLAFELIQNKKQLI-KLLEEKMFFYAQNMRFEEAGEIRDRIQRITRSEIKS 242

Query: 236 DSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQ 292
           +  +      D F + ++++ A I   F   G+   +   +++ +      ++    L  
Sbjct: 243 EIDFATKENYDIFVIQNSESRAVIVRIFMRDGKIISSTHDYIQLNEGYDEDELYQRVLLD 302

Query: 293 FYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR 350
           FY+ +  P    IL++ E E   ++E      +  K  I +PKQG K+++I+ A++NA  
Sbjct: 303 FYSKEKPPIIAPILVASEFENLQVIEQHLSTVFEKKASIKIPKQGNKKQLIDLAILNAKE 362

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
              +  ++  +  +      +   L  +PKR+E++DNSH+ G + VG M+V  +  F K 
Sbjct: 363 LLKKDKNSIDTKLLDDL--KELLLLERLPKRVEVFDNSHMAGVATVGAMIVYEDGKFDKK 420

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YR ++L       +D+ A MR  L RR     KN                S PD+ I+D
Sbjct: 421 SYRTYHLE-----AKDEYAQMRETLTRRVESFSKN----------------SPPDLWIID 459

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISI------AKGPKRSAGMEKFFVKKGEALVLNMRD 524
           GG   L  A  ++    V   I II+I      AK  +     +     K     L   D
Sbjct: 460 GGATLLKLASEIVDSCGV--FIDIIAISKEKIDAKAHRAKGKADDIIHTKDNIFKLKHSD 517

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
             L + Q LRDEAHR AI  H+K + K    S L  + GI   + + LL  FGT + +  
Sbjct: 518 KRLQWTQNLRDEAHRSAINFHKKTKLKLDNESKLLTLKGISGAKVKKLLNHFGTFEALKT 577

Query: 584 SSPETLASIEGISKKIACKIYN 605
            + E + SI  ++ K A  I N
Sbjct: 578 LTIEEIGSI--LNTKDANVIKN 597


>gi|15645440|ref|NP_207614.1| excinuclease ABC subunit C [Helicobacter pylori 26695]
 gi|3024782|sp|P56428|UVRC_HELPY RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|2313951|gb|AAD07868.1| excinuclease ABC subunit C (uvrC) [Helicobacter pylori 26695]
          Length = 594

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 170/608 (27%), Positives = 281/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +P   GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACIFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDRLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   N F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHSSSQCVGGMVVYENNAF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        D+   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSDEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|312149048|gb|ADQ29119.1| excinuclease ABC, C subunit [Borrelia burgdorferi N40]
          Length = 580

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 163/595 (27%), Positives = 280/595 (47%), Gaps = 32/595 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           ML+   ++LY+GKA NL+ R+KSY    N +H+I  ++  + +I    T +E EALLLE 
Sbjct: 1   MLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTNSEYEALLLEC 59

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N+IK  KP +N+ L+D K +P + IT   K P ++K R     +  YFGPF +V  +++ 
Sbjct: 60  NLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGPFTNVKKLDQV 118

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + + +AK  L+G 
Sbjct: 119 LDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKELDKAKSILNGN 174

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251
              +  +I   +  A  KED+E+AI  ++   +L  I              D   ++  +
Sbjct: 175 ISEISSQIDIKLKHAIQKEDFETAIKLKEIRNSLIEINQIQIVTKTNNLNIDYVHVHPGE 234

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
           N+  I    +  G+       F ++  +     +          +   P+ I +  +  +
Sbjct: 235 NVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPDKIHIFLKDID 294

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
           T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E      L+    
Sbjct: 295 TKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENKSTKALESLKI 351

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
              +  +PK IE +D +H+ G   V  MV        K  YR + L+       DD   +
Sbjct: 352 VLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLLKGEIDDFKAI 411

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           + V+ RR+S++I N                  P+++++DGGKGQL+AA  +LK L +EN+
Sbjct: 412 KEVISRRYSEIINNN--------------LELPNLILIDGGKGQLNAALSILKGLKIENK 457

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
           + + S+AK  +       F     + + L    P L  +Q +RDEAHR A   ++KRR+K
Sbjct: 458 VKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKANGFNKKRREK 512

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
                  +I+GIG    + +L+S GT K I   S   ++    ++ ++A +I   
Sbjct: 513 ITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAKRIKEF 566


>gi|330509008|ref|YP_004385436.1| excinuclease ABC subunit C [Methanosaeta concilii GP-6]
 gi|328929816|gb|AEB69618.1| excinuclease ABC, C subunit [Methanosaeta concilii GP-6]
          Length = 519

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 176/558 (31%), Positives = 268/558 (48%), Gaps = 45/558 (8%)

Query: 1   MSSEQMPECPGVYQMLD---IAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           +S + +P  PG Y   D     G ++YVGKA +L+KRI +Y    NH+ R   +++ I  
Sbjct: 2   ISLDSLPHLPGCYLFRDSPEEWGNIIYVGKARDLKKRISNYFQKQNHSPRTAALVAAIKG 61

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           + F VT TEVEALLLE  +IK+ +PR+NI L+D   +  I +T   + P +   R +   
Sbjct: 62  VDFIVTNTEVEALLLENTLIKKHQPRYNIKLKDSSRYASIHLT-DEEFPRIRISRKAQ-G 119

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
            GS++GPF S          +++ F LR+C     R   R CL + +  CSGPC G+I+ 
Sbjct: 120 PGSFYGPFVSAKERGFVYQIVRKAFGLRTCK----RLPKRACLRYHLCHCSGPCIGKITK 175

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           + Y   V  AK  LSG    L   +   M     ++D+E AI  RD + AL  +Q     
Sbjct: 176 KDYQARVQRAKSALSGRTAELISSMKEEMTGRANRQDFERAIELRDEINALDRLQERQRV 235

Query: 238 IYNR-MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
             NR  D   + +  +   +    F   +         +  S       L  F+ Q+Y++
Sbjct: 236 EQNRKYDQDIISYLMDKEIVYLMLFKVYRGTLAGKEEYQFPSSED---FLEEFVVQYYSE 292

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              PE ++  E  +    LE       G KV++TVPKQGEK++++  A  N   S     
Sbjct: 293 NEPPEELIAPEPFD--DSLEEFLAHLKGKKVRVTVPKQGEKKELLLLAQKNLEISVFGDR 350

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           +        L    +   LP  P+ IE +D SH+ G  AVG MV        K+ YR+F 
Sbjct: 351 AK-------LVALQEALHLPKKPEVIECFDISHLAGSFAVGSMVQFRSGKPDKSNYRRFK 403

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    V+  DD A +  V+ RR+S+L K  + L              PD++++DGG GQL
Sbjct: 404 IRD--VQGGDDFASIAEVVRRRYSRLKKENKEL--------------PDLIVIDGGAGQL 447

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           S+A   L+++ V  ++ IIS+AK  +     E +       L +   +    ++Q +RDE
Sbjct: 448 SSALKELREMRV--KVPIISLAKREE-----EIYVPGLDGPLDIKKNEKASLYLQEIRDE 500

Query: 537 AHRFAITTHRKRRKKAAY 554
           AHRFAI  +R  RKKA  
Sbjct: 501 AHRFAIAYNRLLRKKALT 518


>gi|312147825|gb|ADQ30484.1| excinuclease ABC, C subunit [Borrelia burgdorferi JD1]
          Length = 580

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 163/595 (27%), Positives = 279/595 (46%), Gaps = 32/595 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           ML+   ++LY+GKA NL+ R+KSY    N +H+I  ++  + +I    T +E EALLLE 
Sbjct: 1   MLNENKKILYIGKAKNLRSRVKSYFLEKN-SHKIKILMKNVKSIEVITTNSEYEALLLEC 59

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N+IK  KP +N+ L+D K +P + IT   K P ++K R     +  YFGPF +V  +++ 
Sbjct: 60  NLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDKSEYFGPFTNVKKLDQV 118

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ + +TF +R C     +    PCL + + +C G C  E   ++Y + + +AK  L+G 
Sbjct: 119 LDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQKELDKAKSILNGN 174

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251
              +  +I   +  A  KED+E+AI  +    +L  I              D   ++  +
Sbjct: 175 ISEISSQIDIKLKHAIQKEDFETAIKLKKIRNSLIEINQIQIVTKTNNLNIDYVHVHPGE 234

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
           N+  I    +  G+       F ++  +     +          +   P+ I +  +  +
Sbjct: 235 NVNTIIVLKYRNGKLVERDANFDESICKENELILQFLIQYYTSINMIVPDKIHIFLKDID 294

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
           T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E      L+    
Sbjct: 295 TKNVEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENKSTKALESLKI 351

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
              +  +PK IE +D +H+ G   V  MV        K  YR + L+       DD   +
Sbjct: 352 VLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGMPFKENYRLYKLNSLLKGEIDDFKAI 411

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           + V+ RR+S++I N                  P+++++DGGKGQL+AA  +LK L +EN+
Sbjct: 412 KEVISRRYSEIINNN--------------LELPNLILIDGGKGQLNAALSILKGLKIENK 457

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
           + + S+AK  +       F     + + L    P L  +Q +RDEAHR A   ++KRR+K
Sbjct: 458 VKVCSLAKKQET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKANGFNKKRREK 512

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
                  +I+GIG    + +L+S GT K I   S   ++    ++ ++A +I   
Sbjct: 513 ITL-LYTKIHGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNVQLAKRIKEF 566


>gi|134045891|ref|YP_001097377.1| excinuclease ABC subunit C [Methanococcus maripaludis C5]
 gi|132663516|gb|ABO35162.1| Excinuclease ABC subunit C [Methanococcus maripaludis C5]
          Length = 526

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 164/564 (29%), Positives = 268/564 (47%), Gaps = 52/564 (9%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           ++   +P+  G Y   + +G V+YVGKA NL+KR+ SY +  NH  +   ++  I  + F
Sbjct: 2   INISDIPKNSGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTESLVKSIYEMEF 61

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  EVEAL+LE  +IK+  P++NI L+D K++ YI I+ +   P +   R+ S     
Sbjct: 62  IVTDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYIS-EEDFPRIGILRNKSKKG-K 119

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           ++GPF S    +  ++ L++TF +RSC +       RPCL + IK C+ PC+G+I+S+ Y
Sbjct: 120 FYGPFTSAKERDYVLDVLKKTFKIRSCKNMH----KRPCLRYHIKNCTAPCSGDITSKDY 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
           +  + +A+  L G  ++L +++   M+  +    +E A++ R+ + A+  ++   +   +
Sbjct: 176 LNQIKKAESVLKGHINSLIDELRIEMDNKSKNLQFEEALLIREEINAIEKLKIRQNVKRD 235

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  S+        I       G       F                FL Q+Y++ 
Sbjct: 236 VKYNEDVISILEKSGKIHIMVFNVLKGTLFDRKYFEFDYTEN-----FFEEFLIQYYSEN 290

Query: 298 PCPENILLSEEAEETSLLE--------ISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
             P  I++SE  +                  ++ G KV   +PKQGEK+++++ A+ N  
Sbjct: 291 EVPSEIIISELPKNIEEESYYNSDAILEYLSQKKGSKVTFKIPKQGEKKQLLDLAIKNLE 350

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                           ++    K    + P  IE +D SH+ G S V  MV        K
Sbjct: 351 IYVNGNEIK-------VESLKNKLMFDNSPNVIECFDISHLSGTSTVASMVQFRNGKPDK 403

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
             YR+F +    V   DD   +  V+ RR+S+LI+    L              PD++I+
Sbjct: 404 KNYRRFKIKT--VSGIDDFKSISEVVVRRYSKLIEENLEL--------------PDLIII 447

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQLS+A   L+KL +  +I +ISIAK  +     E +       L +   +    F
Sbjct: 448 DGGKGQLSSAFKELQKLKL--KIPLISIAKREE-----EIYAPGIENPLPIKKNEKASLF 500

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA 553
           IQ +RDEAHRFAI  +R  RKK  
Sbjct: 501 IQEIRDEAHRFAINYNRLLRKKEL 524


>gi|323948207|gb|EGB44195.1| excinuclease ABC [Escherichia coli H120]
          Length = 513

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 165/521 (31%), Positives = 272/521 (52%), Gaps = 31/521 (5%)

Query: 96  YILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR 155
           +I ++     P L  HR +   +G YFGPF +  AV +T+  LQ+ F +R C +SV+R+R
Sbjct: 7   FIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR 65

Query: 156 TRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214
           +RPCL +QI RC GPC    +S E+Y + V   + FLSG +  +  ++   M  A+   +
Sbjct: 66  SRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLE 125

Query: 215 YESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTF 272
           +E A   RD++ A+  +          + +D   +  +  +AC+   F   G+  G+ ++
Sbjct: 126 FEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY 185

Query: 273 FLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSEEAEETSLLEISFFKQYGYKVK 328
           F K    +  ++++  F+ QFY      +  P  ILL     + +LL  S  +  G K+ 
Sbjct: 186 FPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKIN 245

Query: 329 ITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNS 388
           +    +G++ + ++ A  NA  + T KLS + +    L        LP +  R+E +D S
Sbjct: 246 VQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDIS 304

Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN 448
           H MG   V   VV   NG ++ +YR++N+    +   DD A M  VL RR+ + I + + 
Sbjct: 305 HTMGEQTVASCVVFDANGPLRAEYRRYNI--TGITPGDDYAAMNQVLRRRYGKAIDDSK- 361

Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSA 505
                          PDV+++DGGKGQL+ A+ V  +L+V   +N   ++ +AKG  R A
Sbjct: 362 --------------IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKA 407

Query: 506 GMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGI 563
           G+E  F   +GE   L    P L+ IQ +RDE+H  AI  HRK+R K    S L+ I G+
Sbjct: 408 GLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGV 467

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           GP R+++LL+  G ++ +  +S E +A + GIS+ +A KI+
Sbjct: 468 GPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 508


>gi|298736525|ref|YP_003729051.1| excinuclease ABC subunit C [Helicobacter pylori B8]
 gi|298355715|emb|CBI66587.1| excinuclease ABC subunit C [Helicobacter pylori B8]
          Length = 594

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 166/608 (27%), Positives = 276/608 (45%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +P   GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHRTSLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYSKIAKECLEMIENKDRLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDK-PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y    P     +L       +L E       QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLIPEQILLNACSNEALKELQDFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   N F
Sbjct: 363 AQE--IFSQEKISNEDLILEEARSLFKLECMPYRVEIFDTSHHSSSQCVGGMVVYENNAF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K+ YR+++L        D+   M  +L RR     K                   P++ 
Sbjct: 421 QKDSYRRYHLK-----GSDEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGP------KRSAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K        +   G +           L 
Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRAKGGAKDIIHTISNTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|317182134|dbj|BAJ59918.1| excinuclease ABC subunit C [Helicobacter pylori F57]
          Length = 594

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 168/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNHRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNTCSNETLKELQDFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G E       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAEDIIHTANDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|46199484|ref|YP_005151.1| excinuclease ABC subunit C [Thermus thermophilus HB27]
 gi|81405651|sp|Q72IF0|UVRC_THET2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|46197110|gb|AAS81524.1| excinuclease ABC subunit C [Thermus thermophilus HB27]
          Length = 630

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 157/545 (28%), Positives = 250/545 (45%), Gaps = 34/545 (6%)

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           + F  T  EVEALLLEAN+IK  +P +N+LL+DDK +P++ +T+    P L   R     
Sbjct: 97  LDFIATRDEVEALLLEANLIKAHRPLYNVLLKDDKHYPFLKLTN-EPFPTLLVVRRVEED 155

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              Y+GPF    A+ +    + R F LR  +    + R  PCL + + RC  PC G+   
Sbjct: 156 GAKYYGPFPEAGALRRIKTLIDRLFPLRKNSGYPMKRRRYPCLNYSMGRCLAPCVGKADP 215

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA----ALSHIQN 233
           E Y E V + +  L G    L +++   M +A  + ++E A   RD++       S  Q 
Sbjct: 216 EAYQEVVRQVEAVLEGRVDGLLQELEAKMREAARRLEFERAAEIRDQMEALRAFFSTDQQ 275

Query: 234 HNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
             D     +D   +  +  LA +Q      G+  G  +  ++ +  +    + ++    +
Sbjct: 276 AFDPEMGDLDFLGMARSGALAVVQLYQVRSGRILGRISRVVEKEEATDEEILWAFLRDHY 335

Query: 294 YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS-- 351
               P P  +LL    E+   L     ++ G KV++ VPK+GEK +++E A  NA  +  
Sbjct: 336 LEASPLPPLVLLPFPLEDLESLAELLKRRAGRKVELRVPKKGEKARLLELAERNARLALE 395

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
              KL         LK       LP  P R+E YD SH+ G + V  + V       + +
Sbjct: 396 TELKLRERRGEHPALKALQDLLGLPARPWRLEGYDISHLQGQARVFSIAVFEGGRPKRQE 455

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR+  L        DD A M   + RR++  +K+    +                  +DG
Sbjct: 456 YRRMRLK----AGNDDYAAMEEGVFRRYTGSLKDLPLPDLLL---------------IDG 496

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G GQ+ AA   L+K  +  R+ ++ +AKG       E     +G  L L +  P L  + 
Sbjct: 497 GVGQVRAAARALEKAGL--RLPLVGLAKGE------EVLVTPEGRELRLPLTHPALQLLI 548

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            LRDEAH+  +  HRKRR +  +  L  I GIG  R+RLLL+ +G ++ +  +  E LA 
Sbjct: 549 HLRDEAHQNGLRYHRKRRSEELFRVLQGIPGIGEKRRRLLLERYGGLRALKEAPLEELAR 608

Query: 592 IEGIS 596
           + G+S
Sbjct: 609 LPGMS 613


>gi|217032512|ref|ZP_03438003.1| hypothetical protein HPB128_180g11 [Helicobacter pylori B128]
 gi|216945790|gb|EEC24413.1| hypothetical protein HPB128_180g11 [Helicobacter pylori B128]
          Length = 599

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 166/608 (27%), Positives = 276/608 (45%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +P   GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHRTSLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYSKIAKECLEMIENKDRLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDK-PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y    P     +L       +L E       QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLIPEQILLNACSNEALKELQDFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   N F
Sbjct: 363 AQE--IFSQEKISNEDLILEEARSLFKLECMPYRVEIFDTSHHSSSQCVGGMVVYENNAF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            K+ YR+++L        D+   M  +L RR     K                   P++ 
Sbjct: 421 QKDSYRRYHLK-----GSDEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +           L 
Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRAKGGAKDIIHTISNTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|210135021|ref|YP_002301460.1| excinuclease ABC subunit C [Helicobacter pylori P12]
 gi|226698352|sp|B6JM52|UVRC_HELP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|210132989|gb|ACJ07980.1| excinuclease ABC subunit C [Helicobacter pylori P12]
          Length = 594

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 167/608 (27%), Positives = 279/608 (45%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +P   GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + R+  M+ Q
Sbjct: 8   LKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHRASLRVQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCED 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   +  + +   +  + +++   M + + K  +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKKCLEMIENKDRLI-KELELKMERLSSKLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGTSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDK-PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y    P     +L       +L E       QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLIPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   N F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENNAF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR ++L        D+ A M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRLYHLK-----GSDEYAQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNLKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|317180585|dbj|BAJ58371.1| excinuclease ABC subunit C [Helicobacter pylori F32]
          Length = 594

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 167/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNHRTSLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|108563232|ref|YP_627548.1| excinuclease ABC subunit C [Helicobacter pylori HPAG1]
 gi|119367658|sp|Q1CT48|UVRC_HELPH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|107837005|gb|ABF84874.1| excinuclease ABC subunit C [Helicobacter pylori HPAG1]
          Length = 594

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 169/608 (27%), Positives = 278/608 (45%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEITPNHRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYSKIAKECLEMIENRDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILLS    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLSACSNEALKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A               +IL++    F L  +P R+EI+D SH      VG MVV   N F
Sbjct: 363 AQE--IFSQEKTSDEDLILEEVRSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|323253985|gb|EGA37809.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
          Length = 475

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 163/484 (33%), Positives = 258/484 (53%), Gaps = 26/484 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEVLVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 370 LSQQSTITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 429 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 471

Query: 476 LSAA 479
           L+ A
Sbjct: 472 LAQA 475


>gi|157415509|ref|YP_001482765.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni
           81116]
 gi|189038032|sp|A8FMV1|UVRC_CAMJ8 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|157386473|gb|ABV52788.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748151|gb|ADN91421.1| UvrABC system protein C [Campylobacter jejuni subsp. jejuni M1]
          Length = 600

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 180/625 (28%), Positives = 291/625 (46%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R+KSY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P     R  
Sbjct: 69  TVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY+E + EA   L   +  + + + + M      E+YE A   RD++  +  ++ 
Sbjct: 182 RISREKYLEILDEAMHALLNPSILI-KNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLEV 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    +K D +    +I   
Sbjct: 241 KVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISVNSKITPIKNDIQWDKNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKR+I + A  
Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRMLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV    N 
Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYSANS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K++YRKF+L       ++D   MR VL R                +  ++     PD+
Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLMR----------------RALDFDKIPPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G             L++
Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGARDKIHSLKGEFSLSI 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNL-GLSSGVIQKLLAYYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + LA + G  KK+A KI  
Sbjct: 577 IYKADFKDLAMLVG--KKVAQKIKE 599


>gi|308063390|gb|ADO05277.1| excinuclease ABC subunit C [Helicobacter pylori Sat464]
          Length = 594

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 168/608 (27%), Positives = 281/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY   +N+        + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNHQLLYIGKAKNLKKRIKSYFSIHNNEITPNYRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGKGNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEAQSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTASDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|283954808|ref|ZP_06372324.1| LOW QUALITY PROTEIN: excinuclease ABC subunit C [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793648|gb|EFC32401.1| LOW QUALITY PROTEIN: excinuclease ABC subunit C [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 600

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 180/625 (28%), Positives = 285/625 (45%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R+KSY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +EV+AL+LE + IK+L P++NILLRDDK++PYI +    + P     R  
Sbjct: 69  TVHLEFITTNSEVDALILENSFIKQLHPKYNILLRDDKTYPYIYVNLDEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KTPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY E + EA   L      + + + + M      E+YE A   RD++  +  ++ 
Sbjct: 182 RISKEKYREILDEAIYALLNPGILV-KNLEKQMLILAQNENYEEAAKIRDQITTIKDLEV 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    +K D +    +I   
Sbjct: 241 KVEIDIAKLEDFEVFALAFENSILSTLRFVVQNGKIISVNSKIIPVKNDIQWDKNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKRKI + A  
Sbjct: 301 LILENFSTDIPLLASFIYVYEEFEDRVLLEKILSQRFDKKISIKIPKIGEKRKICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     + K+    F L ++P  +EI+DNSH+ G + VG MV    N 
Sbjct: 361 NALLNIE--KEQKNHDFNMQKELKSYFELENLPNYVEIFDNSHLQGVANVGVMVAYRVNS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K +YRKF+L        +D   MR VL R                +  ++     PD+
Sbjct: 419 WDKLKYRKFHLKYK-----NDYDQMREVLTR----------------RALDFDKMPPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGG+  L  A+ ++        I  IS     AK  +   G +           L+ 
Sbjct: 458 WLIDGGRALLDLAKEIIASSGANVDILAISKEKIDAKAYRAKGGAKDKIHSLKGEFSLST 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ HR  +KK     S L   +GI     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHRNTKKKQDLTSSKLIN-SGISAGVIQKLLAFYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + L  + G  KK A KI  
Sbjct: 577 IYKADFKELMMLVG--KKAAQKIKE 599


>gi|317178818|dbj|BAJ56606.1| excinuclease ABC subunit C [Helicobacter pylori F30]
          Length = 594

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 167/608 (27%), Positives = 282/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRI+SY   +N+        + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIRSYFSIHNNEITPNYRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A +          +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQK--IFSQEKTSNEDLILEEAQSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTARDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|154149057|ref|YP_001406225.1| excinuclease ABC subunit C [Campylobacter hominis ATCC BAA-381]
 gi|153805066|gb|ABS52073.1| excinuclease ABC, C subunit [Campylobacter hominis ATCC BAA-381]
          Length = 607

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 182/635 (28%), Positives = 291/635 (45%), Gaps = 65/635 (10%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------------THR 47
             + +P+  GVY+  D  G +LYVGKA  L+ R++SY    +               + R
Sbjct: 5   EIKSLPKQSGVYEYFDKDGHLLYVGKAKILKNRVRSYFSFTSKNSAANGSLPSNPKVSPR 64

Query: 48  ITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA 107
           I  MIS+  ++ + VT +E +AL+LE + IK+LKP++NILLRDDK++PYI I    K P 
Sbjct: 65  IAKMISEAVHLEYIVTPSESDALILENSFIKQLKPKYNILLRDDKTYPYIYIDLSEKFPR 124

Query: 108 LYKHRDSSTIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKR 166
               R         YFGP+       + + +L   F L     +      + C+ +QIKR
Sbjct: 125 FKITRKVIKGTNIKYFGPY--FKGSREILEALYYQFALVQ--KNGCLKSKKECIFYQIKR 180

Query: 167 CSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226
           C  PCTG+ISSE+Y++ V+E+ KF+      L   +   M    L E++E A   RD + 
Sbjct: 181 CKAPCTGKISSEEYVKIVNESIKFIKNPELLLPN-LEILMQNYALGENFEEAAKIRDMIN 239

Query: 227 ALSHIQNHNDS---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS---ES 280
            +  I+   +         +  ++    NL  +       G+  G+    +   +   + 
Sbjct: 240 TIKDIEVRVEVDLARLEDFEVIAINSYANLVAVVRFSVRDGKISGSKCNIINFKNLTKDD 299

Query: 281 TNAQILSYFLRQFYTDKPCPENILLSE-EAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339
            N       L  +    P   N + +  + E+  L+      ++G K +I  PK GEKR+
Sbjct: 300 FNDIYRQAILEIYPEGAPVGANKIYTYDDFEDKELVAKILENKHGRKFQINSPKIGEKRR 359

Query: 340 IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
           I E A  N   +  + L  +      L +    F L ++P  IEI+DNSH+ G + VG M
Sbjct: 360 ICEIAFKNCEINIQKHL--KTHDYGFLSELKDYFDLQNLPVNIEIFDNSHMFGNTPVGAM 417

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           V   +  F K  YR  +L  N     +D   M   L  R  +  K               
Sbjct: 418 VCFKDGNFYKENYRHAHLKSN-----NDYDQMIEFLTLRVKRFDK--------------- 457

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAG--MEKFFV 512
             S PD+ ++DGGK  L  A  +LK + V   + +I+I+K        R+ G   +K   
Sbjct: 458 -ISPPDLWVIDGGKALLDLAGQILKSVGV--NVDVIAISKEKIDAKAHRAKGAAKDKIVT 514

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSP-LDEINGIGPLRKRL 570
             G    L+  D  L F Q+LRDEAHRFAI+ H+K +RK+   S  L ++ G+     + 
Sbjct: 515 ING-TFSLSTYDKKLQFFQKLRDEAHRFAISFHQKSKRKQDLTSSKLLKM-GVSAGSLKK 572

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L+  FG+ + I  +  + + ++   +KK A  ++ 
Sbjct: 573 LIDFFGSFEKIYEADYDEIKNLT--NKKTAEILFK 605


>gi|297380024|gb|ADI34911.1| excinuclease ABC, C subunit [Helicobacter pylori v225d]
          Length = 594

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 167/608 (27%), Positives = 278/608 (45%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY    N+        + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNHQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + + +   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KALELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+     N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFCGKGNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKFALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTASDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|261837949|gb|ACX97715.1| excinuclease ABC subunit C [Helicobacter pylori 51]
          Length = 594

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 169/608 (27%), Positives = 282/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNHRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++A  M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELALKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQDFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   +GF
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHGF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTARDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|261839360|gb|ACX99125.1| excinuclease ABC subunit C [Helicobacter pylori 52]
          Length = 594

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 167/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEITPNHRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTASDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|291276903|ref|YP_003516675.1| excinuclease ABC subunit C [Helicobacter mustelae 12198]
 gi|290964097|emb|CBG39941.1| excinuclease ABC subunit C [Helicobacter mustelae 12198]
          Length = 597

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 180/616 (29%), Positives = 291/616 (47%), Gaps = 62/616 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +P   GVYQ  D  G++LYVGKA N++KR+KSY          +   + RI  M+SQ
Sbjct: 7   LQNLPTTFGVYQYFDANGKLLYVGKAKNIKKRVKSYFRIFENTLIPNPTASTRIKLMLSQ 66

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           +++I   V  +E +ALLLE +MIK+LKP++NILLRDDK++PYI+I  +   P++   R  
Sbjct: 67  VSHIHTMVVSSEQDALLLENSMIKQLKPKYNILLRDDKTYPYIVIDLEEDFPSISITRKI 126

Query: 115 STIQG-SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
              +   YFGP+ S       ++SLQ    L      V     + CL +QI++C  PC  
Sbjct: 127 QDQKSLRYFGPYPSGG--RDILDSLQDLLPLVQKKSCV--KGKKACLFYQIQKCPAPCEN 182

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +IS + Y   + +A K L      L   I + M   +    +E A I+++RL  +  + +
Sbjct: 183 KISKDAYALTIKQAIKILQNKKLLL-SLIEQKMLSLSQNLLFEEAQIYKNRLQKIKELSS 241

Query: 234 HNDSIYNR-------MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286
            ++    +             + N  +A +   F   G+     +  +++D +     + 
Sbjct: 242 FSEISAQKPYDLDIISAIKEPHKNGYIAILVKLFMRNGKIIAADSKRVRSDYDIDIQSLF 301

Query: 287 SYFLRQFYTDKPC--PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
           + +L   Y  K    P+ IL+SEE E+   L+       G K+ I+VPK G K+ +I   
Sbjct: 302 TQYLLSHYKHKLPLLPQAILVSEELEDVQGLQNFLQDTQGRKIPISVPKSGFKKNLIHIG 361

Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
           + NA     Q+ +   S   IL    + FAL   P RIE++D SH      VG M+V   
Sbjct: 362 IKNARELLRQEANLCASD--ILIQIKESFALSQTPFRIEVFDTSHHAMSFNVGGMIVYDM 419

Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
             F  + YR +NL        D+ A MR +L  R    +K                   P
Sbjct: 420 QNFDPSSYRHYNLQSK-----DEYAQMREMLLHRIESFVK----------------SPPP 458

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG-----MEKFFVKKGEALV 519
           ++ ++DGG+ QL+ AQ +L+    +  I  IS  K   ++        ++ + K+ + L 
Sbjct: 459 NLWVIDGGRAQLNLAQNLLESAGYDIDILAISKEKRDHKAYRAKGYARDRIYTKERD-LR 517

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLR---KRLLLQSFG 576
           L+  D  L F+Q+LRDE+HRFAI  HR ++ K     L       P     ++ LLQ FG
Sbjct: 518 LDPSDKRLQFLQKLRDESHRFAIKFHRSQKTKNLTKNL-------PYTTAEQKRLLQYFG 570

Query: 577 TVKMISRSSPETLASI 592
               +  +S + ++ +
Sbjct: 571 DFAKLQSASAQEISQV 586


>gi|315586513|gb|ADU40894.1| excision endonuclease subunit UvrC [Helicobacter pylori 35A]
          Length = 594

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 168/608 (27%), Positives = 278/608 (45%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY    N+        + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYSKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNTCSNETLKELQDFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR ++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRHYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTANDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|188527333|ref|YP_001910020.1| excinuclease ABC subunit C [Helicobacter pylori Shi470]
 gi|238691918|sp|B2UT08|UVRC_HELPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|188143573|gb|ACD47990.1| excinuclease ABC subunit C [Helicobacter pylori Shi470]
          Length = 594

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 168/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY    N+        + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNHQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRTSLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGKGNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTASDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|111115286|ref|YP_709904.1| excinuclease ABC, subunit C [Borrelia afzelii PKo]
 gi|110890560|gb|ABH01728.1| excinuclease ABC, subunit C [Borrelia afzelii PKo]
          Length = 575

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 164/595 (27%), Positives = 279/595 (46%), Gaps = 32/595 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           ML+   ++LY+GKA NL+ RIKSY      +H+I  ++  + +I    T +E EALLLE 
Sbjct: 1   MLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTNSEYEALLLEC 59

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N+IK  KP +N+ L+D K +P + IT   K P ++K R     Q  YFGPF +V  +++ 
Sbjct: 60  NLIKTHKPDYNVKLKDGKGYPMVRIT-HEKYPRIFKTRKIINDQSEYFGPFTNVKKLDQV 118

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ + +TF +R C     +    PCL + + +C G C  E   ++Y E + +AK  L+G 
Sbjct: 119 LDFINKTFKIRKCK----KKSNTPCLYYHMGQCLGVCFKENLEKEYQEELDKAKSILNGN 174

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251
              +  +I   +  A  KED+E+AI  ++  ++L  I              D   ++  +
Sbjct: 175 ISEILSQIDIKLKLAVQKEDFENAIKLKEIKSSLIEINQIQIVTKTNNLNTDYVYVHPGE 234

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
           N+  I    +  G+       F ++  +     +          +   P+ I +  +  +
Sbjct: 235 NVNTIIVLKYRNGKLVERDANFDESICKKNELILQFLIQYYTSINMIVPDKIHIFLKDID 294

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
           T   E    +    K +I   +  E  KI+E A+ NA  S  +    E  +   L+    
Sbjct: 295 TKNAEKLINEIKNTKTEIIYKETEEILKIMEMAISNAELSLREY---ENKNNKALESLKI 351

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
              +  +PK IE +D +H+ G   V  MV        K  Y+ + L+       DD   +
Sbjct: 352 FLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLLKGEIDDVKAI 411

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           + V+ RR+S++I                    P+++++DGGKGQL+AA  +LK L +EN+
Sbjct: 412 KEVILRRYSEIIN--------------KNLELPNLILIDGGKGQLNAAFSILKGLKIENK 457

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
           + + S+AK  +       F     + + L    P L  +Q +RDEAHR A   ++KRR+K
Sbjct: 458 VKVCSLAKKHET-----IFLTTNKKGINLPQGHPALRILQNVRDEAHRKANGFNKKRREK 512

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
                  +INGIG    + +L+S GT K I   S   ++    ++ ++A +I   
Sbjct: 513 ITL-LYTKINGIGEKTAQKILKSIGTYKDILPLSENEISEKIKVNIRLAKRIKEF 566


>gi|308062141|gb|ADO04029.1| excinuclease ABC subunit C [Helicobacter pylori Cuz20]
          Length = 594

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 168/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY    N+        + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNCQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRTSLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKISP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGKGNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGESSVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|50364916|ref|YP_053341.1| repair endonuclease subunit C [Mesoplasma florum L1]
 gi|81391981|sp|Q6F216|UVRC_MESFL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|50363472|gb|AAT75457.1| repair endonuclease subunit C [Mesoplasma florum L1]
          Length = 588

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 153/609 (25%), Positives = 272/609 (44%), Gaps = 48/609 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
               +P  PG Y  L+    V+YVGKA NL+KR+ SY        + T ++ +I ++ + 
Sbjct: 6   KVSNLPSKPGCYLYLNKDKHVIYVGKAKNLKKRVSSYF-DRAQNLKTTRLVREIADLEYF 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V   E E+LLLE N+IK+ +P++N+LL DDK++PYI+IT+  K P     R         
Sbjct: 65  VVSNEKESLLLEENLIKKYRPKYNVLLNDDKAYPYIIITN-EKDPTYKYVRKLDKKAFRS 123

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP        +T+ +LQR F LR C  ++     +PCL + I +CSG C  E++ E Y 
Sbjct: 124 FGPLPIGSNARETLITLQRLFPLRRCKGNL----GKPCLHYFIGQCSGACFKEVNKEYYQ 179

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           E +     F  G  + +K  +   M++A     +E A   ++++ +L       +  +  
Sbjct: 180 EQIKRVDNFFKGNINEVKTLLTNQMHKAAENLQFEEAQRIKEQIISLDFTTTKQNVEFKS 239

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D  S +       I T F+  G+        ++   E     ++  F+ Q Y    
Sbjct: 240 QTDVDVISYFIEDEKIAIVTLFYRSGKLLFKD-EHIQLYFEQDITDLIDSFMSQIYDKNI 298

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I++  E E   L E             T P + +++ I + A  NA  +  +   +
Sbjct: 299 LPDKIIVDNEVELFDLNEKYKS-------ISTHPIKEDEKIIYKLATENAQEAIRKSKIS 351

Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                 +   +L +  +K  L   P R+E++D S+I     VG  VV       +N++RK
Sbjct: 352 TTINIGNENELLLELQEKANLQKEPYRLEMFDISNIGNEFIVGSCVVYINGKPARNEFRK 411

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +N+         D   ++ +L RRF + +  +  L              PD++I+DGG  
Sbjct: 412 YNIESKFT---SDYDRLKEMLYRRFQKALIEKRML--------------PDLIIMDGGII 454

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q+ AA+ ++  L +   I +I + K    +           E +++  +  +  ++  ++
Sbjct: 455 QIHAAKEIINALGLS-EIQVIGLVKDEHHNTSF--LIDTNEEQVIIKDKPKLFNWLSSIQ 511

Query: 535 ---DEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
              DE   +A +  RK++  +   S L++I G+G  R + L + F T+  I  +  E L 
Sbjct: 512 VRVDE---YAKSGFRKKQNNSFLKSDLEQIEGLGKKRIQDLFKKFNTINEIESADQEELF 568

Query: 591 SIEGISKKI 599
            I    K +
Sbjct: 569 KILKNKKAL 577


>gi|308182980|ref|YP_003927107.1| excinuclease ABC subunit C [Helicobacter pylori PeCan4]
 gi|308065165|gb|ADO07057.1| excinuclease ABC subunit C [Helicobacter pylori PeCan4]
          Length = 594

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 167/608 (27%), Positives = 279/608 (45%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY    N+        + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNHQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRTSLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   + A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGRGHKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILLS    E    L+     +Y  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLSACSNEVLKELQEFISHRYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +           L 
Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSNTFKLF 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|51598713|ref|YP_072901.1| excinuclease ABC subunit C [Borrelia garinii PBi]
 gi|51573284|gb|AAU07309.1| excinuclease ABC, subunit C [Borrelia garinii PBi]
          Length = 580

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 162/595 (27%), Positives = 278/595 (46%), Gaps = 32/595 (5%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           ML+   ++LY+GKA NL+ RIKSY      +H+I  ++  + +I    T +E EALLLE 
Sbjct: 1   MLNENKKILYIGKAKNLRSRIKSYFLEK-KSHKIKILMKNVKSIEVITTNSEYEALLLEC 59

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N+IK  KP +N+ L+D K +P I IT   K P + K R     Q  YFGPF +V  +++ 
Sbjct: 60  NLIKTHKPDYNVKLKDGKGYPMIRIT-HEKYPRILKTRKIINDQSEYFGPFTNVKKLDQV 118

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ + +TF +R C     +    PCL + + +C G C  E   ++Y   V++AK  L+G 
Sbjct: 119 LDFINKTFKIRKCK----KKSNAPCLYYHMGQCLGVCYKENLEKEYQIEVNKAKSILNGN 174

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251
              +  +I   +  A  KED+E+AI  ++  ++L  I              D   ++  +
Sbjct: 175 ISEILSQIDIKLKLAVQKEDFETAIKLKEMKSSLIEINQIQIVTKANNLNIDYVYVHPGE 234

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEE 311
           N+  I    +  G+       F ++  +     +          +   P+ I +  +  +
Sbjct: 235 NVNTIIVLKYRDGKLVERDANFDESICKKDELVLQFLIQYYTSINMIVPDKIHIFLKDVD 294

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
           T  +E    +    K +I   +  E  KI+E A+ NA  S  +    E      L+    
Sbjct: 295 TKNVEKLINEIKNTKTEIIYKETKEILKIMEMAISNAKLSLREY---ENKSNKALESLKI 351

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
              +  +PK IE +D +H+ G   V  MV        K  Y+ + L+       DD   +
Sbjct: 352 FLEMDKLPKIIEGFDIAHLKGQETVASMVTFKMGIPFKENYKLYKLNSLLKGEIDDFRAI 411

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           +  + RR+S++I  +                 P+++++DGGKGQLSAA  +LK L +E++
Sbjct: 412 KEAILRRYSEIINKK--------------LELPNLILIDGGKGQLSAAFSILKSLKIEDK 457

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
           + + S+AK  +       F +   + + L    P L  +Q +RDEAHR A   ++KRR+K
Sbjct: 458 VKVCSLAKKHET-----IFLITNKKGINLPQGHPALRILQNVRDEAHRKANGFNKKRREK 512

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
                  +I+G+G    + +L+  GT K I   S   ++    ++ K+A +I   
Sbjct: 513 ITL-LYKKIDGVGEKTAQKILKLIGTYKDILPLSENEISEKIKVNIKLAKRIKEF 566


>gi|218562858|ref|YP_002344637.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|81549181|sp|Q9PN51|UVRC_CAMJE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|112360564|emb|CAL35361.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315927130|gb|EFV06481.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 600

 Score =  355 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 180/625 (28%), Positives = 292/625 (46%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R++SY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P     R  
Sbjct: 69  TVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY+E + EA   L   +  L + + + M      E+YE A   RD++A +  ++ 
Sbjct: 182 LISREKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    +K D +    +I   
Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKR+I + A  
Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV    N 
Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K++YRKF+L       ++D   MR VL R                +  ++     PD+
Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++    V   I  IS     AK  +   G +           L++
Sbjct: 458 WLIDGGKALLDLAKEIIVSSGVNVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVMQKLLAYYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + L  + G  +K A KI  
Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599


>gi|317177347|dbj|BAJ55136.1| excinuclease ABC subunit C [Helicobacter pylori F16]
          Length = 594

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 167/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY    N+        + RI  M+ Q
Sbjct: 8   LKNLSHNSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNCRASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   + A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSHKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDVSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDFKAYRSKGGAKDIIHTARDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|217034132|ref|ZP_03439552.1| hypothetical protein HP9810_868g25 [Helicobacter pylori 98-10]
 gi|216943416|gb|EEC22872.1| hypothetical protein HP9810_868g25 [Helicobacter pylori 98-10]
          Length = 594

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 168/608 (27%), Positives = 281/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEITPNHRTSLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+   F QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQLHLPLMPEQILLNACSNETLKELQEFIFHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTARDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|86152975|ref|ZP_01071180.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843860|gb|EAQ61070.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 600

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 177/625 (28%), Positives = 290/625 (46%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R++SY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P     R  
Sbjct: 69  TIHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVNFEEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY+E + EA   L   +  + + + + M      E+YE A   RD++  +  ++ 
Sbjct: 182 RISKEKYLEILDEAMHALLNPSILI-KNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLEV 240

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    +K D +    +I   
Sbjct: 241 KVEMDVAKLEDFEVFALAFEDSMLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKR+I + A  
Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV    N 
Sbjct: 361 NALLNIE--KEQKNHGFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K++YRKF+L       ++D   MR VL R                +  ++     PD+
Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G +           L++
Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + L  + G  +K A KI  
Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599


>gi|283956641|ref|ZP_06374120.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283791890|gb|EFC30680.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 600

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 185/625 (29%), Positives = 292/625 (46%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ RIKSY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRIKSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P     R  
Sbjct: 69  TVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVNFEEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY+E + EA   L   +  + + + + M      E+YE A   RD++A +  ++ 
Sbjct: 182 RISREKYLEILDEAMHALLNPSILI-KNLEKQMLVLAQNENYEEAAKVRDQIATIKDLEV 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    +K D +    +I   
Sbjct: 241 RVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKIISANSKITPIKNDIQWDKNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKR+I + A  
Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV    N 
Sbjct: 361 NAFLNIE--KEQKNHGFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVNYSANS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K++YRKF+L       ++D   MR VL RR     KN                  PD+
Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLMRRALDFDKN----------------PPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G +           L++
Sbjct: 458 WLIDGGKTLLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + LA + G  KK A KI  
Sbjct: 577 IYKADFKDLAMLVG--KKAAQKIKE 599


>gi|161528611|ref|YP_001582437.1| excinuclease ABC subunit C [Nitrosopumilus maritimus SCM1]
 gi|160339912|gb|ABX12999.1| excinuclease ABC, C subunit [Nitrosopumilus maritimus SCM1]
          Length = 528

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 170/559 (30%), Positives = 266/559 (47%), Gaps = 48/559 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PG+Y M D  G ++Y+GKA NL+KR+KSY   N   ++   ++  I++I F +T 
Sbjct: 9   TIPTDPGIYLMKDSDGTIIYIGKAKNLKKRVKSYFLKN-QNYKTQKLVQNISDIEFVLTD 67

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST----IQGS 120
            E EA LLE+NMIK+ +PRFNI L+D + + Y+ I+   K P L   R +       +G 
Sbjct: 68  NESEAFLLESNMIKKYRPRFNIELKDQQRYTYLRIS-DEKYPRLLVARRTRDGKFLGKGK 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGPF    +   TI +L++ F +R C         + CL + +  C GPC    + ++Y
Sbjct: 127 TFGPFTQGSSKLLTIGALRKAFQIRICKTLP----KKVCLEYHLGNCEGPCEFNDAQDRY 182

Query: 181 MEFVHEAKKFLSGGNHN--LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            + V   ++ L G N      +K+   M+QA   + +E A   RD L  L  +Q      
Sbjct: 183 PKHVAALEEVLKGKNQTKIFTKKLEEEMHQAAELQQFERAKDIRDTLIRLGSLQTKQKME 242

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           Y   +  + F +   +  A +       G  R +  FF     +++     S FL Q+Y+
Sbjct: 243 YVENSDEEYFGIGIQEQSATVMNFRMINGVIRDSDKFFFDLVGDNS----FSNFLYQYYS 298

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ I++SE  E   LLE    +Q G+ VKI+ P +G+K+ I+   L N        
Sbjct: 299 THKIPKYIIVSELPENQKLLESLLSEQAGFSVKISTPTKGKKKDIMNLILKNIK------ 352

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L      +  L +      LP IP  IE +D S+     AVG M         K+ YRKF
Sbjct: 353 LIHSKGGEPGLVELKDILHLPVIPNVIECFDISNHGEDFAVGSMAQFVNGKPNKSGYRKF 412

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    V  +DD AM+  V++RR+ +L++    L              PD++++DGGKGQ
Sbjct: 413 KIKT--VSGRDDFAMIGEVIKRRYYRLLEENSEL--------------PDLIVIDGGKGQ 456

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           L+AA   L+ L +  ++  IS+AK  +     E +  K    + +    P L  +Q  RD
Sbjct: 457 LNAATKSLQSLGL--KLPCISLAKENE-----EIYLPKTKNPVTIAKNKPSLQILQHARD 509

Query: 536 EAHRFAITTHRKRRKKAAY 554
           E HRF +  +R  RK    
Sbjct: 510 ETHRFGVAYNRTIRKNQIK 528


>gi|85057678|ref|YP_456594.1| excinuclease ABC subunit C [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|119367627|sp|Q2NJ78|UVRC_AYWBP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|84789783|gb|ABC65515.1| excinuclease ABC subunit C [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 589

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 152/616 (24%), Positives = 267/616 (43%), Gaps = 43/616 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   +    ++YVGKA NL+KR++SY     +  +   +I +  +  + 
Sbjct: 7   KIKTLPPNPGCYLFKNTKDTIIYVGKAKNLKKRVQSYFTK-RNNLKTAMLIEETQDFFYI 65

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS- 120
           +T  E EAL+LEAN+IK   P++N  L DDK++PYI IT K K P L   R      G  
Sbjct: 66  ITNNEQEALILEANLIKTHTPKYNFKLLDDKTYPYIEIT-KEKHPQLKISRFKQIPPGKI 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP+ ++ + ++      +   L            +PCL F I +C G C     +  Y
Sbjct: 125 IFGPYPNLKSTKE----TLKLLHLLYPLRRCQLASKKPCLHFHINQCLGAC--AGKTINY 178

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DS 237
              +    KFL G   ++ +K+   M +A+ K  YE A  +RD + ++          + 
Sbjct: 179 KPNIDAITKFLKGNIKDILKKLHHLMQKASEKMFYEKAQEYRDIIDSIKQTTKKQLISNQ 238

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+   N++   IQ      G    +              + +  +L  +Y   
Sbjct: 239 KLKNCDIFAYAFNQDQIAIQILKIRQGNIVDSYRSVFSYVGFV--CENILTYLNCYYQKN 296

Query: 298 PCPENILLSEEAEETSLLE---ISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             P+ I+  +  +E  L +        +   + K+ +  +G+K+K+   AL NA    + 
Sbjct: 297 IKPDIIITGKNQDENILQQTITNQTLLEQILQTKVNIYHKGDKKKLFLLALKNAQNDLSH 356

Query: 355 KLSTEISHQMILKDF--TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
                 S    +++             KRI+++DNS + G + V   +V     F K  Y
Sbjct: 357 NNLIYQSKDQKIQEALNKLAIIFNKDIKRIDVFDNSQLFGKAFVAARIVFNHFEFDKKLY 416

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           R F++        ++       L R +++  + E +                D++++DG 
Sbjct: 417 RTFHIKGEL---PNEYQAFEETLTRCYNKGKEAENDAT--------------DLILVDGS 459

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
             QL  +Q  LKKL  E  I + ++ K  K         V   E L+L     + +F++ 
Sbjct: 460 LVQLRQSQKTLKKLGYE--IPLGALQKNNKHQL---THLVTFQEKLMLEQDPNLFHFLKS 514

Query: 533 LRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           L +E HRFA++ HRK +KK    + L  I G+G +RK+ +L  F +++ I +++ +    
Sbjct: 515 LSEEVHRFAVSFHRKTKKKLDYKTTLSNIKGVGVVRKKAILNHFESLEAIKKATLQDFQK 574

Query: 592 IEGISKKIACKIYNHF 607
           I GI++K+   I    
Sbjct: 575 I-GINQKLFLLIKKSL 589


>gi|86150569|ref|ZP_01068792.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596087|ref|ZP_01099324.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|85838920|gb|EAQ56186.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190928|gb|EAQ94900.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|284926470|gb|ADC28822.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 600

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 179/625 (28%), Positives = 291/625 (46%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R++SY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P     R  
Sbjct: 69  TVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY+E + EA   L   +  L + + + M      E+YE A   RD++A +  ++ 
Sbjct: 182 LISREKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    +K D +    +I   
Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKR+I + A  
Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV    N 
Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K++YRKF+L       ++D   MR VL R                +  ++     PD+
Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G +           L++
Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVMQKLLAYYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + L  + G  +K A KI  
Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599


>gi|109947296|ref|YP_664524.1| excinuclease ABC subunit C [Helicobacter acinonychis str. Sheeba]
 gi|122973348|sp|Q17XV1|UVRC_HELAH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|109714517|emb|CAJ99525.1| excinuclease ABC subunit C [Helicobacter acinonychis str. Sheeba]
          Length = 594

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 164/608 (26%), Positives = 281/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ Q
Sbjct: 8   LKNLSNGSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEITPNHRTSLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
              +   YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQLGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M++ +    +E A+I+RDR++ +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELQLKMDRLSSNLRFEEALIYRDRISKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   N A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYGKNNRAVLVKMFMRGGKIISSAFEKIHSLNGFDADEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+   + ++  K+ + +PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFIYHKHSKKITLNIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            + + IL++      L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTSNEEEILEEVRSLLNLECVPYRVEIFDTSHHANSQCVGGMVVYENSAF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++ A M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYAQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A   LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRVQLNIALETLKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTMSDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWVQKLRDESHRYAINFHRSTKIKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|317014230|gb|ADU81666.1| excinuclease ABC subunit C [Helicobacter pylori Gambia94/24]
          Length = 594

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 170/600 (28%), Positives = 275/600 (45%), Gaps = 52/600 (8%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62
           GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ QI  +   +
Sbjct: 16  GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNSRTSLRIQMMVKQIAFLETIL 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121
              E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R         Y
Sbjct: 76  VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  +I+ E+Y+
Sbjct: 136 FGPFTSGS--KDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I          
Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D F+ Y   N A +   F   G+   +    + + +     + +   +   Y    
Sbjct: 251 LYDLDIFAFYGGNNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310

Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
              PE ILLS    E    L+     QY  K+ + +PK+G+K  +IE A+ NA       
Sbjct: 311 PLMPEQILLSACSNEVLKELQEFISHQYSKKIALNIPKKGDKLALIEIAMKNAQE--IFS 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                S   IL++    F L  +P R+EI+D SH      VG MVV   N F KN YR++
Sbjct: 369 QEKTSSEDRILEETRSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAFQKNSYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           +L        ++   M  +L RR     K                   P++ ++DGG+ Q
Sbjct: 429 HLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLWVIDGGRVQ 467

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529
           L+ A  +LK     + + +I+I+K  +         G +           L   D  L +
Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSNTFKLLPSDKRLQW 525

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + I ++S + 
Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585


>gi|121613588|ref|YP_001000921.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005831|ref|ZP_02271589.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|189038034|sp|A1W0N0|UVRC_CAMJJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|87249544|gb|EAQ72503.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 600

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 178/625 (28%), Positives = 290/625 (46%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R+KSY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P     R  
Sbjct: 69  TVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVNFEEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY+E + EA   L   +  + + + + M      E+YE A   RD++  +  ++ 
Sbjct: 182 RISKEKYLEILDEAMHALLNPSILI-KNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLEV 240

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    +K D +    +I   
Sbjct: 241 KVEMDVAKLEDFEVFALAFEDSMLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKR+I + A  
Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV    N 
Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKFYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K++YRKF+L       ++D   MR VL R                +  ++     PD+
Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G +           L++
Sbjct: 458 WLIDGGKVLLDLAKKIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + L  + G  +K A KI  
Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599


>gi|332673373|gb|AEE70190.1| excision endonuclease subunit UvrC [Helicobacter pylori 83]
          Length = 594

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 167/608 (27%), Positives = 280/608 (46%), Gaps = 52/608 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH--------THRITHMISQ 54
            + +    GVYQ  D   ++LY+GKA NL+KRIKSY    N+        + RI  M+ Q
Sbjct: 8   LKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHCASLRIQMMVKQ 67

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           I  +   +   E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R  
Sbjct: 68  IAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKI 127

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  
Sbjct: 128 LKQPGVKYFGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEN 183

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +I+ E+Y++   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I  
Sbjct: 184 KITKEEYLKIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAP 242

Query: 234 HNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                      +D F+ Y   + A +   F   G+   +    + + +     + +   +
Sbjct: 243 FTCMDLAKLYDLDIFAFYSGSHKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAI 302

Query: 291 RQFYTDKPC--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
              Y       PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ N
Sbjct: 303 INHYQSHLPLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKN 362

Query: 348 AHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
           A            +  +IL++    F L  +P R+EI+D SH      VG MVV   + F
Sbjct: 363 AQE--IFSQEKTYNEDLILEEARSLFKLECMPYRVEIFDASHHANGQCVGGMVVYENHEF 420

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV 467
            KN YR+++L        ++   M  +L RR     K                   P++ 
Sbjct: 421 QKNSYRRYHLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLW 459

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLN 521
           ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +       +   L 
Sbjct: 460 VIDGGRVQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTSNDTFKLL 517

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             D  L ++Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + 
Sbjct: 518 PSDKRLQWMQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEA 577

Query: 581 ISRSSPET 588
           I ++S + 
Sbjct: 578 IEKASEQE 585


>gi|206895692|ref|YP_002247526.1| excinuclease ABC, C subunit [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738309|gb|ACI17387.1| excinuclease ABC, C subunit [Coprothermobacter proteolyticus DSM
           5265]
          Length = 595

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 151/625 (24%), Positives = 263/625 (42%), Gaps = 56/625 (8%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           EQ P  PGVY     +G+V+YVGKA +L  R+  Y  S     +   ++S  + + + + 
Sbjct: 8   EQAPHSPGVYLFYGNSGQVIYVGKASDLHNRLADYARSQP-GQKEHLIMSNASKVSWIIV 66

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR---DSSTIQGS 120
             E ++L LE  +IK+  P +N+LL+D K + Y+ I    + PA+   R           
Sbjct: 67  ANERQSLELEETLIKKYAPPYNVLLKDGKGYSYLRIDLSQEYPAVEIVRIKQRKPKPGQL 126

Query: 121 YFGPFAS----------VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGP 170
            FGPF               ++  I   +  F +RSC     + R RPC+ ++I RCSGP
Sbjct: 127 LFGPFVPLRVPDMPGKVRGDLKNLIQIAEEVFGIRSCK-GPLKRRMRPCVYYEIGRCSGP 185

Query: 171 CTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
           C G+IS E+Y + V    KFL G    ++ ++ + M +     ++E A   RD L  +  
Sbjct: 186 CIGKISPEEYKDRVQLFIKFLKGDTKEVENRLTKMMKEEAENLNFERAAELRDLLYTVKR 245

Query: 231 IQNHNDSIYN-RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289
           I    ++  +   D  +    ++ A         G           + +    ++++  F
Sbjct: 246 IGMQREANVDGSADLIAFALKEDQASGFVVSVRDGMITNVFGLKYSSGATIEPSEVMESF 305

Query: 290 LRQF---YTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            R +   Y ++     +  +       L  +   +                + ++  A  
Sbjct: 306 FRDYVRLYHEQGVLAYVNGAVAETLKPLGSLHGVQVEAVPDHW--------KALLRVAEE 357

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  S  ++       +  L    +   L HIP RIE +D + + G   VG  V      
Sbjct: 358 NA-ESILERDEGTERIKRGLLRIKEVLRLEHIPTRIEGFDMAQLFGSERVGGKVAYVNGQ 416

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           F    YR + +  +    +DD + M  VL R   +L   +  L              PD+
Sbjct: 417 FYTPWYRHYRIKGSY---KDDFSFMYEVLIR---RLQDEKTGL--------------PDL 456

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGG+  L+  +  +++L V   +  ++IAK   R      F   K + + L   D  
Sbjct: 457 MLIDGGRQHLAVVEKAMEQLGVT--VPAVAIAKPDDR-----LFVSWKEDPIYLPPEDVG 509

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
              +Q +R+EAHR+  + HRK R +     L  + GIG  R+R L+++FG +  +  +S 
Sbjct: 510 KQVLQTIRNEAHRWVNSYHRKLR-EDFGDILLGVPGIGKARRRKLIETFGGMVGLQAASI 568

Query: 587 ETLASIEGISKKIACKIYNHFHKNT 611
           E L    G+  K+A ++Y   H   
Sbjct: 569 EELTVKGGLPPKVAQQLYRALHPED 593


>gi|15639463|ref|NP_218913.1| excinuclease ABC subunit C [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025703|ref|YP_001933475.1| excinuclease ABC subunit C [Treponema pallidum subsp. pallidum
           SS14]
 gi|6136158|sp|O83485|UVRC_TREPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|238689322|sp|B2S367|UVRC_TREPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|3322752|gb|AAC65452.1| excinuclease ABC, subunit C (uvrC) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018278|gb|ACD70896.1| excinuclease ABC, subunit C [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059855|gb|ADD72590.1| excinuclease ABC subunit C [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 691

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 150/668 (22%), Positives = 261/668 (39%), Gaps = 70/668 (10%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           + +   P   GVY   D+ G V+YVGKA +L+ R+ SY     H  +   ++S+   + +
Sbjct: 13  IQALSAPSTSGVYLWKDVHGVVIYVGKAKSLRTRLTSYFR-CRHDPKTRVLMSRAAALEY 71

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T  E EALLLE  +IK+  PR+NI L+D K++P + +T     P +++ R        
Sbjct: 72  LQTQHEYEALLLENTLIKKHTPRYNICLKDGKTYPLLKLTC-EPFPRIFRTRQFCQDGAR 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF  V  ++  +  + RT+ +R+C     R R  PCL + +KRC  PC G +S   Y
Sbjct: 131 YFGPFPDVQILDSFLKLILRTYKIRTCT--TLRKRKNPCLYYHLKRCDAPCCGWVSPRTY 188

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH---NDS 237
            + +HE    L G       ++ + M +A  +E +E+A   RD + A+  I +     D 
Sbjct: 189 QKDIHEITLLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLVQDM 248

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +      +          G+  G   F  ++       +ILS FL  +Y+D 
Sbjct: 249 DERARDYIAWSSTGAIVTFAVLRMRGGKLNGRELFRTRSLKNEE--EILSEFLITYYSDH 306

Query: 298 PCPENILLS-------EEAEETSLLEISFFKQYGYKVKITVPKQG----EKRKIIEQALI 346
             P ++ +              +  + +      +                  +      
Sbjct: 307 TIPPHLFVHSSAGLAEHWLSHKAGTQCTVTLIPLHTFPTPQTPSSTVTTNAPTLAASQNS 366

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA +    +  +E S    L+            +    ++++H     A+  M  +  + 
Sbjct: 367 NAVQDSGLRSCSETSTMHTLQKAHDACTASEGTRENTPHESAHTPHHRAILAMAQLNAHE 426

Query: 407 ---------------------------------FVKNQYRKFNLHPNDVKTQDDCAMMRM 433
                                            F  +         + +  ++     + 
Sbjct: 427 DITRYLKNRGADDALKELQKQLHLARIPTLIEGFDISHLGGKYTVASLICFKNGAPDTKN 486

Query: 434 VLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVV------ILDGGKGQLSAAQGVLKKLN 487
                        ++     +     +   P+        ++DGG G +SAAQ VL  L 
Sbjct: 487 YRLFNLRAHDTRIDDFASMREAIARRYTHTPEGYTLPDLILVDGGIGHVSAAQHVLDALG 546

Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547
           +   I ++ +AK  +     E F       LVL+ R+P L+ +QR+RDEAHRFAIT +R 
Sbjct: 547 LS--IPLVGLAKRAE-----ELFIPNSPTPLVLDRRNPALHMLQRIRDEAHRFAITRNRH 599

Query: 548 RR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            R KK      + +  +G +R   LL  FG+ + +  ++P+ +A+   I    A  I   
Sbjct: 600 LRTKKELVLSFERLPHVGKVRAHRLLAHFGSFRSLQSATPQDIATAIHIPLTQAHTI--- 656

Query: 607 FHKNTSHT 614
            H  T  T
Sbjct: 657 LHAATRST 664


>gi|315929341|gb|EFV08548.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           305]
          Length = 600

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 179/625 (28%), Positives = 291/625 (46%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R++SY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P     R  
Sbjct: 69  TVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVNFEEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY+E + EA   L   +  L + + + M      E+YE A   RD++A +  ++ 
Sbjct: 182 LISREKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    +K D +    +I   
Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKR+I + A  
Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV    N 
Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K++YRKF+L       ++D   MR VL R                +  ++     PD+
Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G +           L++
Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVMQKLLAYYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + L  + G  +K A KI  
Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599


>gi|148926243|ref|ZP_01809928.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845414|gb|EDK22507.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 600

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 180/625 (28%), Positives = 290/625 (46%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R+KSY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P     R  
Sbjct: 69  TVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + ++ L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDVLYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY+E + EA   L   +  L + + + M      E+YE A   RD++A +  ++ 
Sbjct: 182 LISKEKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    +K D +    +I   
Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDQNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKR+I + A  
Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV    N 
Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKFYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K++YRKF+L       ++D   MR VL R                +  ++     PD+
Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G +           L++
Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + L  + G  +K A KI  
Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599


>gi|145642359|ref|ZP_01797921.1| excinuclease ABC subunit C [Haemophilus influenzae R3021]
 gi|145272960|gb|EDK12844.1| excinuclease ABC subunit C [Haemophilus influenzae 22.4-21]
          Length = 474

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 166/491 (33%), Positives = 264/491 (53%), Gaps = 27/491 (5%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   +V+YVGKA +L+KR+ SY   N  + +   +++ I++I  T+T +E E
Sbjct: 1   EPGVYRMYDDKDQVIYVGKAKDLKKRLSSYFRKNLSSKKTEALVASIHHIDTTLTSSETE 60

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N IK  +PR+N+LLRDDKS+P+IL+T K + P +  +R S    G YFGP+   
Sbjct: 61  ALLLEHNFIKLYQPRYNVLLRDDKSYPFILLT-KERHPRITSYRGSKKFAGEYFGPYPHA 119

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEA 187
            AV +T++ LQ+ F +R C +SV+ +R+RPCL +QI RCS PC    +S E+Y + V  A
Sbjct: 120 GAVRETLSLLQKLFPVRQCENSVYSNRSRPCLQYQIGRCSAPCVQGYVSDEEYNQQVELA 179

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS---IYNRMDC 244
           + FL G +  + + +   M QA+   D+E A  +RD++ A+  +           + MD 
Sbjct: 180 RLFLQGKDQLVLDYLIGKMEQASRNLDFEQAARYRDQIQAVRSVIEKQFVSNERLDDMDI 239

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCP 300
            S+ +   LAC+Q  F   G+  G  ++F K  + +  +++   F+ QFY      +  P
Sbjct: 240 MSIAYQHGLACVQVMFIRQGKVLGNRSYFPKVPANTDLSELTETFVGQFYLQGHQGRSIP 299

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
            +I++  +  E S LE     Q G KV I    +G+K K ++ A +NA  +   +L    
Sbjct: 300 NSIIVDRQLAEKSELEQLLTDQAGRKVTIQESVKGDKSKYLQLAQVNAKAALNVQLKQSS 359

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
                 +       LP I  R+E +D SH MG   V   VV  + G +K+ YR+FN+   
Sbjct: 360 RMSERYQALCDLLNLPEIK-RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG- 417

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
            +   DD A M   L++R+ + ++ ++                PD++ +DGGKGQL+ A 
Sbjct: 418 -ITGGDDYAAMEQALQKRYERDLEEDK---------------IPDIIFIDGGKGQLNRAL 461

Query: 481 GVLKKLNVENR 491
            V + L V+  
Sbjct: 462 NVFQHLQVKWD 472


>gi|118575737|ref|YP_875480.1| excinuclease nuclease subunit [Cenarchaeum symbiosum A]
 gi|118194258|gb|ABK77176.1| excinuclease nuclease subunit [Cenarchaeum symbiosum A]
          Length = 531

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 161/560 (28%), Positives = 256/560 (45%), Gaps = 49/560 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY M D    ++Y+GKA +L+ R+ SY       ++   ++ +I +I F +T +
Sbjct: 10  VPAQPGVYLMKDSKANIIYIGKAKSLRNRVSSYFTGA-QNYKTKKLVEKIADIEFVLTDS 68

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST----IQGSY 121
           E EA +LE+N+IKR +P +NI L+D + + Y+ +T   ++P L   R   +     +G  
Sbjct: 69  EGEAFVLESNLIKRYRPMYNIELKDQQRYTYLRVT-DEELPRLLVARRMRSGKFIGKGRI 127

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GPF    +   TI +L+++F +R C           CL + +  C  PC    + + Y 
Sbjct: 128 YGPFTHGSSKLLTIGTLRKSFKVRICKTLP----KTACLEYHLGNCEAPCEIASAKKDYA 183

Query: 182 EFVHEAKKFLSG--GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
             + + +  L G         K+   M +A+  +DYE A+  RD L  L  ++      Y
Sbjct: 184 GHIKDLESVLKGGAETEKFATKMKDEMGRASESQDYERAMEIRDTLRRLGSLRTDQKMEY 243

Query: 240 ----NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                  D F +      A + +     G  R    F     +++T       FL Q+YT
Sbjct: 244 ARVSPDEDYFGMRVWDQSALVMSLRQVNGVIRDRDRFSFDLVADNTLG----SFLYQYYT 299

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P  ++ SEE  +   LE +     G  V I  P +G ++K+IE  L N        
Sbjct: 300 THKTPRYVVTSEEPPQKGALEKALTDAAGRSVSIVSPSRGRRKKMIELILRN------ID 353

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           L      +  L++  +   L   P+ IE +D S+     AVG M  + +    ++ YRKF
Sbjct: 354 LMQTSGTEPALEELGEALGLGGPPRTIECFDISNHGADFAVGAMSRLSDGAPDRSGYRKF 413

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    V  +DD AM+  V+ RR+ +L+                  + PD+V++DGGKGQ
Sbjct: 414 KIRT--VSGRDDYAMIAEVVRRRYMRLL--------------GGGGTAPDLVLIDGGKGQ 457

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           L AA G LK   +  RI  +S+AK  +     E F     E LVL    P L  ++  RD
Sbjct: 458 LGAALGALK--GMAARIPCVSLAKKNE-----EVFRPGSPEPLVLPRTSPALGVLRHARD 510

Query: 536 EAHRFAITTHRKRRKKAAYS 555
           EAHRF +  +RK R  A  S
Sbjct: 511 EAHRFGVEYNRKLRSMAIKS 530


>gi|308184606|ref|YP_003928739.1| excinuclease ABC subunit C [Helicobacter pylori SJM180]
 gi|308060526|gb|ADO02422.1| excinuclease ABC subunit C [Helicobacter pylori SJM180]
          Length = 594

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 165/600 (27%), Positives = 275/600 (45%), Gaps = 52/600 (8%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62
           GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ QI  +   +
Sbjct: 16  GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNSRVSLRIQMMVKQIAFLETIL 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121
              E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R         Y
Sbjct: 76  VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  +I+ E+Y+
Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCENKITKEEYL 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I          
Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK- 297
              +D F+ Y   N A +   F   G+   +    + + +     + +   +   Y    
Sbjct: 251 LYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310

Query: 298 PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           P     +L       +L E       QY  K+ +++PK+G+K  +IE A+ NA       
Sbjct: 311 PLIPEQILLNACSNEALKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKNAQE--IFS 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                +  +IL++    F L  +P R+EI+D SH      VG MVV   + F KN YR++
Sbjct: 369 QEKTSNEDLILEEARSLFNLECVPYRVEIFDVSHHSNSQCVGGMVVYENHAFQKNSYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           +L        ++ A M  +L RR     K                   P++ ++DGG+ Q
Sbjct: 429 HLK-----GSNEYAQMSELLTRRALDFAKE----------------PPPNLWVIDGGRVQ 467

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529
           L+ A  +LK     + + +I+I+K  +         G +           L   D  L +
Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGTKDIIHTPSNTFKLLPSDKRLQW 525

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + I ++S + 
Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNIKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585


>gi|317012631|gb|ADU83239.1| excinuclease ABC subunit C [Helicobacter pylori Lithuania75]
          Length = 594

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 165/600 (27%), Positives = 275/600 (45%), Gaps = 52/600 (8%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62
           GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ QI  +   +
Sbjct: 16  GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEIVPNHRASLRIQMMVKQIAFLETIL 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121
              E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R         Y
Sbjct: 76  VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  +I+ E+Y+
Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I          
Sbjct: 192 KIAKECLEMIENKDKLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK- 297
              +D F+ Y   N A +   F   G+   +    + + +     + +   +   Y    
Sbjct: 251 LYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310

Query: 298 PCPENILLSEEAEETSLLE--ISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           P     +L       +L E       QY  K+ +++PK+G+K  +IE A+ NA       
Sbjct: 311 PLIPEQILLNACSNEALKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKNAQE--IFS 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                +  +IL++    F L  +P R+EI+D SH      VG MVV   N F KN YR++
Sbjct: 369 QEKTSNEDLILEEARSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAFQKNSYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           +L        ++   M  +L RR     K                   P++ ++DGG+ Q
Sbjct: 429 HLK-----GSNEYTQMSELLTRRALDFAKE----------------PPPNLWVIDGGRAQ 467

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529
           L+ A  +LK     + + +I+I+K  +         G +       +   L   D  L +
Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLLPSDKRLQW 525

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + I ++S + 
Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585


>gi|86150755|ref|ZP_01068971.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124706|ref|YP_004066710.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841925|gb|EAQ59171.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018428|gb|ADT66521.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 600

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 182/625 (29%), Positives = 292/625 (46%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R+KSY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P     R  
Sbjct: 69  TIHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY+E + EA   L   +  L + + + M      E+YE A   RD++A +  ++ 
Sbjct: 182 LISKEKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    +K D +    +I   
Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDKNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKR+I + A  
Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV    N 
Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKFYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K++YRKF+L       ++D   MR VL R                +  ++     PD+
Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G +           L++
Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNL-GLSSGVIQKLLAYYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + LA + G  KK A KI  
Sbjct: 577 IYKADFKDLAMLVG--KKAAQKIKE 599


>gi|326780018|ref|ZP_08239283.1| excinuclease ABC, C subunit [Streptomyces cf. griseus XylebKG-1]
 gi|326660351|gb|EGE45197.1| excinuclease ABC, C subunit [Streptomyces cf. griseus XylebKG-1]
          Length = 755

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 134/476 (28%), Positives = 233/476 (48%), Gaps = 16/476 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+P+ PGVY+  D   RV+YVGKA NL++R+ +Y     N   R   M++   ++ +
Sbjct: 10  KPGQIPDSPGVYKFRDEHRRVIYVGKAKNLRQRVANYFQDLANLHPRTRTMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      
Sbjct: 70  TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKKKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ + R F +R+C+  VF++     RPCLL  I +CS PC G ++ 
Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRVTP 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E   +   F++G       ++ ++M QA  + +YE A   RD   AL      +  
Sbjct: 190 EEHRELAEDFCDFMAGRTGTYIRRLEKDMMQAAEEMEYERAARLRDDAEALKRAMEKSAV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +          + ++ + L+Q Y
Sbjct: 250 VLADATDADLIAVAEDELEAALQIFHVRGGRVRGQRGWVTDKVEAVDTSGLVEHALQQLY 309

Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    E+   +      + G +V + +P++G+K+ ++     NA ++
Sbjct: 310 GEERGDAVPKEVLVPALPEDPEAVSQWLADRRGSQVSLRIPQRGDKKDLMATVQRNAQQA 369

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P RIE YD SH+ G   V  MVV  +   
Sbjct: 370 LGLHKTKRASDLTTRSRALEEIAEALGLDTAPLRIECYDISHLQGDDVVASMVVFEDGLA 429

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSW 463
            K++YR+F +     + QDD   M  V+ RRF + ++++E      + QE +  + 
Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFKRYLQDKERTGEWEEAQEAAPGAP 483



 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 91/160 (56%), Gaps = 7/160 (4%)

Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504
           ++E        +   F   P +V++DGG+ Q++AA+  L +L +++ I +  +AK  +  
Sbjct: 572 DDEPEPREDDGRPKRFAYPPQLVVVDGGQPQVAAARRALDELGIDD-IAVCGLAKRLE-- 628

Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGI 563
              E +     + +VL      LY +QR+RDEAHRFAIT  R +R K   S PLD++ G+
Sbjct: 629 ---EVWLPDDDDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRAKRAKRIRSSPLDDVTGL 685

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           G  RK+ L++ FG+VK + +++ + +  + GI ++ A  +
Sbjct: 686 GETRKQALIKHFGSVKKLRQATIDEICEVPGIGRRTAESV 725


>gi|57238119|ref|YP_179369.1| excinuclease ABC subunit C [Campylobacter jejuni RM1221]
 gi|81353442|sp|Q5HTL6|UVRC_CAMJR RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|57166923|gb|AAW35702.1| excinuclease ABC, C subunit [Campylobacter jejuni RM1221]
 gi|315058679|gb|ADT73008.1| Excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni S3]
          Length = 600

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 179/625 (28%), Positives = 291/625 (46%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R+KSY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P     R  
Sbjct: 69  TVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY+E + EA   L   +  L + + + M      E+YE A   RD++A +  ++ 
Sbjct: 182 LISREKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIKDLEV 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    ++ D +    +I   
Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIRNDIQWDQNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKR+I + A  
Sbjct: 301 LILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV    N 
Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKFYFELENLPNDIEIFDNSHLQGVANVGAMVTYRINS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K++YRKF+L       ++D   MR VL R                +  ++     PD+
Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G +           L++
Sbjct: 458 WLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSI 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + L  + G  +K A KI  
Sbjct: 577 IYKADFKDLTMLVG--RKAAQKIKE 599


>gi|331703264|ref|YP_004399951.1| Excinuclease ABC subunit C [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328801819|emb|CBW53972.1| Excinuclease ABC subunit C [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 584

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 151/611 (24%), Positives = 275/611 (45%), Gaps = 35/611 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   +    V+YVGKA NL+KR+ +Y +   +  + T ++ +I ++++ 
Sbjct: 6   QVDLLPNKPGCYLFFNKDNDVIYVGKAKNLKKRVSTYFNKA-YNIKTTRLVREITDLKYF 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E E+LLLE N+IK+  P++N+LL DDK++PYI+IT++   P     R         
Sbjct: 65  IVDNEKESLLLEKNLIKKYHPKYNVLLNDDKTYPYIIITNQKD-PMYKYVRKYDKKALKN 123

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP          + +LQR F LR C  ++     +PCL + + +CSG C  ++    Y 
Sbjct: 124 YGPLPIGSNARSILLTLQRLFPLRMCQGNL----NKPCLYYHLNQCSGACFKQVDPSYYE 179

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             + +  KF  G  + +K+ + + M +A+    +E A   +D++ +L  I    +     
Sbjct: 180 YQIKQVDKFFKGEINQVKQTLIKQMQKASDNLQFEQAQRIKDQITSLDFITAKQNVDIVT 239

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D  +   N++  C    F+  GQ      +    D     +++ + +L+Q Y    
Sbjct: 240 NKNIDVVNYEINQDKICFVMLFYRLGQLTYKDEYIQNYD-GQNLSELFNSYLQQIYQKNI 298

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ +L+  E E   L +           K         ++    +L  +  SH      
Sbjct: 299 YPDILLIPNEIELLDLDQNLLEFSSYSLDKQDDVFIKLAKQNAIDSLNKSVISHNVNSGD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E     IL+   +        KRIE++D S+I      G  +V      ++N++RK+N+ 
Sbjct: 359 E---IEILEQLKQISNASKYLKRIEVFDISNIYNQFITGACIVYINAKPIRNEFRKYNID 415

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
           P+      D A M+ +LE+RF + IK +E L              PD++I+DGG  Q+ A
Sbjct: 416 PSYT---SDYARMKFMLEKRFLKQIKEKEQL--------------PDLIIVDGGIIQIHA 458

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL KLN+  +I +I ++K             +  + + +     +  F+  L+    
Sbjct: 459 AKEVLNKLNL--KIDVIGLSKDDHHKTRYLIDIFE--QTIDIKNFKKLYNFLTSLQIRVD 514

Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            +A +  RK+        +  I G+G      L + F T+  I  +S + L  +   +KK
Sbjct: 515 EYAKSGFRKKYHNQLNDQILLIKGVGKKTNLKLYKHFKTIDNIKNASFDELNKVIN-NKK 573

Query: 599 IACKIYNHFHK 609
           I   I ++ +K
Sbjct: 574 ITNLIISNLNK 584


>gi|325923855|ref|ZP_08185460.1| Excinuclease ABC subunit C [Xanthomonas gardneri ATCC 19865]
 gi|325545660|gb|EGD16909.1| Excinuclease ABC subunit C [Xanthomonas gardneri ATCC 19865]
          Length = 481

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 175/478 (36%), Positives = 261/478 (54%), Gaps = 19/478 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M+SQ+  +  TVT 
Sbjct: 17  QLSTAPGVYRMYAGDDTLLYVGKAGALRKRVGSYFNGTPKNARLTSMLSQVARMDVTVTR 76

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE  +IK L PR+N+ LRDDKS+PY+L+T +   P +  HR    +QG YFGP
Sbjct: 77  SEAEALLLENQLIKSLSPRYNVSLRDDKSYPYVLLT-REDWPRIALHRGPRAVQGRYFGP 135

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           +  V  V +T++ + + F LRSC DSVFR+R+RPCL +QI RCS PC   +++  Y E V
Sbjct: 136 YTGVTGVRETLSLMHKLFKLRSCEDSVFRNRSRPCLQYQIGRCSAPCVDLVAAPDYAESV 195

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RM 242
             A  FL G +  L E+I ++M QA+   ++E A   RD L++L  +QN          +
Sbjct: 196 RRATMFLEGKSDQLGEEIMQSMQQASEALEFERAARLRDLLSSLRSMQNRQYVDGRAADL 255

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +     + AC+    F  G+N GT +FF KT+ E +  +IL  F+ Q+Y +   P  
Sbjct: 256 DVLACATQASQACVLLLSFRDGRNLGTRSFFPKTNGEDSADEILGAFVSQYYAEHSPPRE 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           ILL  E  +  L+E +      YKV +    +GE+   +  A  NA  +   +L+++ + 
Sbjct: 316 ILLDREIPDAELIEAALSSAAEYKVTLKWNVRGERAGYLLLATRNAQLTLVTELTSQSAQ 375

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
               +       L    KR+E +D SH MG + V   VV   +G V+ QYR+FN+  + +
Sbjct: 376 HARSEALRDMLGLAEQVKRVECFDISHTMGEATVASCVVFDASGPVRGQYRRFNI--SGI 433

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
              DD A MR  +ERRF + ++                   PDV+++DGG GQL+ A+
Sbjct: 434 TPGDDYAAMRQAIERRFRRAVEEN--------------GVLPDVLLIDGGAGQLAQAK 477


>gi|182439362|ref|YP_001827081.1| excinuclease ABC subunit C [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|229557865|sp|B1W0Y8|UVRC_STRGG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|178467878|dbj|BAG22398.1| putative excinuclease ABC subunit C [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 717

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 134/475 (28%), Positives = 232/475 (48%), Gaps = 16/475 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+P+ PGVY+  D   RV+YVGKA NL++R+ +Y     N   R   M++   ++ +
Sbjct: 10  KPGQIPDSPGVYKFRDEHRRVIYVGKAKNLRQRVANYFQDLANLHPRTRTMVTTAASVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      
Sbjct: 70  TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKKKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ + R F +R+C+  VF++     RPCLL  I +CS PC G ++ 
Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVGRVTP 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E   +   F++G       ++ ++M QA  + +YE A   RD   AL      +  
Sbjct: 190 EEHRELAEDFCDFMAGRTGTYIRRLEKDMMQAAEEMEYERAARLRDDAEALKRAMEKSAV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +          + ++ + L+Q Y
Sbjct: 250 VLADATDADLIAVAEDELEAALQIFHVRGGRVRGQRGWVTDKVEAVDTSGLVEHALQQLY 309

Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    E+   +      + G +V + +P++G+K+ ++     NA ++
Sbjct: 310 GEERGDAVPKEVLVPALPEDPEAVSQWLADRRGSQVSLRIPQRGDKKDLMATVQRNAQQA 369

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P RIE YD SH+ G   V  MVV  +   
Sbjct: 370 LGLHKTKRASDLTTRSRALEEIAEALGLDTAPLRIECYDISHLQGDDVVASMVVFEDGLA 429

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462
            K++YR+F +     + QDD   M  V+ RRF + ++++E      +  E +  S
Sbjct: 430 RKSEYRRFQIKG--FEGQDDVRSMHEVIGRRFKRYLQDKERTGEWEEAPEAAPGS 482



 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 91/160 (56%), Gaps = 7/160 (4%)

Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504
           ++E        +   F   P +V++DGG+ Q++AA+  L +L +++ I +  +AK  +  
Sbjct: 534 DDEPEPREDDGRPKRFAYPPQLVVVDGGQPQVAAARRALDELGIDD-IAVCGLAKRLE-- 590

Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGI 563
              E +     + +VL      LY +QR+RDEAHRFAIT  R +R K   S PLD++ G+
Sbjct: 591 ---EVWLPDDDDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRAKRAKRIRSSPLDDVTGL 647

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           G  RK+ L++ FG+VK + +++ + +  + GI ++ A  +
Sbjct: 648 GETRKQALIKHFGSVKKLRQATIDEICEVPGIGRRTAESV 687


>gi|42560845|ref|NP_975296.1| excinuclease ABC subunit C [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|81400734|sp|Q6MTU8|UVRC_MYCMS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|42492341|emb|CAE76938.1| excinuclease ABC subunit C [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|301321156|gb|ADK69799.1| excinuclease ABC, C subunit [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 584

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 150/611 (24%), Positives = 276/611 (45%), Gaps = 35/611 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   +    V+YVGKA NL+KR+ +Y +   +  + T ++ +I ++++ 
Sbjct: 6   QVDLLPNKPGCYLFFNKDNDVIYVGKAKNLKKRVSTYFNKA-YNIKTTRLVREITDLKYF 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E E+LLLE N+IK+  P++N+LL DDK++PYI+IT++   P     R         
Sbjct: 65  IVDNEKESLLLEKNLIKKYHPKYNVLLNDDKTYPYIIITNQKD-PMYKYVRKYDKKALKN 123

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP          + +LQR F LR C  ++     +PCL + + +CSG C  ++    Y 
Sbjct: 124 YGPLPIGSNARSILLTLQRLFPLRMCQGNL----NKPCLYYHLNQCSGACFKQVDPSYYE 179

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             + +  KF  G  + +K+ + + M +A+    +E A   +D++ +L  I    +     
Sbjct: 180 YQIKQVDKFFKGEINQVKQTLVKQMQKASDNLQFEQAQRIKDQITSLDFITAKQNVDIVT 239

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D  +   N++  C    F+  GQ       +++       +++ + +L+Q Y    
Sbjct: 240 NKNIDVVNYEINQDKICFVILFYRLGQLTYKD-EYIQNYEGQNLSELFNSYLQQIYQKNI 298

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ +L+  E E   L +           K         ++    +L  +  SH      
Sbjct: 299 YPDVLLIPNEIELLDLDQNLLEFSSYSLNKQDDVFIKLAKQNAIDSLNKSVISHNVNSGD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E     IL+   +        KRIE++D S+I      G  +V      ++N++RK+N+ 
Sbjct: 359 E---IEILEQLKQISNASKYLKRIEVFDISNIYSQFITGACIVYINAKPIRNEFRKYNID 415

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
           P+      D + M+ +LE+RF + IK +E L              PD+VI+DGG  Q+ A
Sbjct: 416 PSYT---SDFSRMKFMLEKRFLKQIKEKEQL--------------PDLVIVDGGIIQIHA 458

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL KLN+  +I +I ++K             +  + + +     +  F+  L+    
Sbjct: 459 AKEVLNKLNL--KIDVIGLSKDDHHKTRYLIDIFE--QTIDIKNFKKLYNFLTSLQIRVD 514

Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            +A +  RK+        +  I G+G      L + F T+  I  +S + L  +   +KK
Sbjct: 515 EYAKSGFRKKYHNQLNDQILLIKGVGKKTNLKLYKHFKTIDNIKNASFDELNKVIN-NKK 573

Query: 599 IACKIYNHFHK 609
           I   I ++ +K
Sbjct: 574 ITNLIISNLNK 584


>gi|32265518|ref|NP_859550.1| excinuclease ABC subunit C [Helicobacter hepaticus ATCC 51449]
 gi|81666616|sp|Q7VK73|UVRC_HELHP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|32261566|gb|AAP76616.1| excinuclease ABC subunit C [Helicobacter hepaticus ATCC 51449]
          Length = 621

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 162/625 (25%), Positives = 265/625 (42%), Gaps = 66/625 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQIN 56
            +P   G+YQ  D    +LYVGKA NL+ RIKSY+          NN + RI  M+SQI 
Sbjct: 17  DLPTQSGIYQFFDNEDTLLYVGKAKNLKNRIKSYLSIENKHIVPKNNLSPRIALMVSQIT 76

Query: 57  NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-S 115
            I   +T  E +AL+LE ++IK LKP++NILLRDDK++PYI I      P     R    
Sbjct: 77  RIHTLLTNNEQDALILENSLIKSLKPKYNILLRDDKTYPYIYIDKSLPYPRFELTRQVLK 136

Query: 116 TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
           + Q  YFGPF S     + ++SL     L      V     + C+  QI +C  PC  ++
Sbjct: 137 SNQIQYFGPFVSG--ARELLDSLYDNLPLVQKKSCV--KGKKACIFHQIHKCPAPCENKV 192

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S + Y + + +    +      L + +   M+  +    +E A I RDR+  ++ ++N +
Sbjct: 193 SIQTYAQTIAQGIALIEDKKALL-KILESKMHTLSHNLQFEEAAIMRDRIQKITQMKNQS 251

Query: 236 DSIYNRMDCFSLYHNKNLA------------------CIQTCFFHFGQNRGTCTFFLKTD 277
                  D       +                      +   F   G+   +    L  D
Sbjct: 252 IIDMMSGDYDVFVLQEQDCGKNSQDSHKKSHTALHTHILMMLFIRNGRIISSDFILLHDD 311

Query: 278 --SESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF--KQYGYKVKITVPK 333
             S +         L  + T  P     +L    +   LL +     +Q    +KI  P+
Sbjct: 312 IQSHNLPQLYTQALLNHYKTQIPLLPQEILIPPFDFPDLLHLQQLLREQTRSSLKIVQPQ 371

Query: 334 QGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGC 393
           +G K+ +++ A  NA        + + +    L    +   L  IP  IE++D SH  G 
Sbjct: 372 RGAKKDLLQLAHKNALEIRRLH-TQQNNTFSTLVSIKELCVLSQIPYSIEVFDTSHHSGT 430

Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453
             VG M+V   + F++++YR++ LH +     D+ + M  +L R                
Sbjct: 431 HNVGGMIVYENDDFIRSKYRRYELHTS-----DEYSQMHEMLLR---------------- 469

Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGM 507
           + Q +     P + +LDGG+ Q++ A  +LK +     + +++IAK              
Sbjct: 470 RAQSFDSNPPPALWLLDGGRAQINLALDILKSVG--ANVEVLAIAKMKHNAKAYRAKGNA 527

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLR 567
                 K     L   D  L F+Q+LRDE HR+AIT HR +++K               +
Sbjct: 528 FDILRSKNAEFKLKPNDKRLQFLQKLRDEVHRYAITYHRYKKQKDIQKAQMMGKNYTQAQ 587

Query: 568 KRLLLQSFGTVKMISRSSPETLASI 592
            + LL  FG+ + +  +S E + S+
Sbjct: 588 IKKLLDYFGSFESLKTASQEQINSV 612


>gi|153951039|ref|YP_001397665.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. doylei
           269.97]
 gi|189038033|sp|A7H2D5|UVRC_CAMJD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|152938485|gb|ABS43226.1| excinuclease ABC, C subunit [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 600

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 183/625 (29%), Positives = 291/625 (46%), Gaps = 55/625 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVY+  +  G++LYVGKA NL+ R+KSY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSAGVYEYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPGNSLRIQKMIQE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD- 113
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  K + P     R  
Sbjct: 69  TVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFKEEFPRFEITRKL 128

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +  YFGPF       + +++L   + L+  A         PC+ +QI RC  PC  
Sbjct: 129 VKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLAPCDK 181

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
            IS EKY E + EA   L   +  L + + + M      E+YE A   RD++A +  ++ 
Sbjct: 182 RISKEKYREILDEAMHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKIRDQIATIKDLEV 240

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSY 288
             +         + F+L    ++          G+     +    +K D +    +I   
Sbjct: 241 KVEIDIAKLEDFEVFALAFKNSMLSTLRFVVQNGKIISVNSKITPIKNDIQWDKNEIYKQ 300

Query: 289 FLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
            + + ++         I + EE E+  LLE    +++  K+ I +PK GEKRKI + A  
Sbjct: 301 LILENFSMDIPLLASVIYVYEEFEDRMLLEKILSQRFDKKISIKIPKIGEKRKICDLAFQ 360

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV    N 
Sbjct: 361 NALLNIE--KEQKNHDFTIQKELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYSVNS 418

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
           + K++YRKF+L       ++D   MR VL R                +  ++     PD+
Sbjct: 419 WDKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIPPPDL 457

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNM 522
            ++DGGK  L  A+ ++        I  IS     AK  +   G +           L++
Sbjct: 458 WLIDGGKVLLDLAKEIILSTGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEFSLSV 517

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKM 580
            D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G  + 
Sbjct: 518 NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSLGVIQKLLAYYGNFES 576

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           I ++  + LA + G  KK A KI  
Sbjct: 577 IYKADFKDLAMLVG--KKAAQKIKE 599


>gi|315638966|ref|ZP_07894137.1| excision endonuclease subunit UvrC [Campylobacter upsaliensis JV21]
 gi|315480995|gb|EFU71628.1| excision endonuclease subunit UvrC [Campylobacter upsaliensis JV21]
          Length = 595

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 190/621 (30%), Positives = 299/621 (48%), Gaps = 55/621 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH------SNNHTHRITHMISQINNI 58
            +PE  GVYQ  +  G++LYVGKA NL+KR+KSY        ++ ++ RI  MI++  ++
Sbjct: 8   SLPESAGVYQYFNKEGKLLYVGKAKNLKKRVKSYFSFNPLRANSKNSLRIQKMINEAAHL 67

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-DSSTI 117
           +F  T TE  AL+LE ++IK+L P++NILLRDDK++PYI I    K P     R      
Sbjct: 68  KFISTKTEANALILENSLIKQLHPKYNILLRDDKTYPYIYIDLNEKFPRFELTRKIIKKP 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +  Y+GPF      ++ +N+L   + L+   +       + C+  QI RCSG C   IS 
Sbjct: 128 KIKYYGPF--FKGAKELLNALYLYYPLKQKKNC-----KKLCIFHQISRCSGVCENLISE 180

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E Y E +  A K L   +  + + + + M +    E+YE A   RD + A+  ++     
Sbjct: 181 ENYKEILANATKALLNPSLLI-KNLEQAMLKYAHNENYEEAGKVRDEINAIKALETKVQI 239

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCT--FFLKTDSESTNAQILSYFLRQ 292
                   + F+L     +          G+   T +    LK    +TN       L  
Sbjct: 240 DLARLEDFEIFALASENGICSTLRFIIQEGKIISTHSKIHILKEKEINTNEIYKQVLLES 299

Query: 293 FYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
           F  D P     I + ++ E+  LLE    +++  K+ I VP++GEKRKI + A  NA  +
Sbjct: 300 FNQDSPLVSNQIYVYKDFEDRKLLEELLSERFAKKIHIQVPQKGEKRKICDLAFENALLN 359

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
               L  + +   ++++    F L ++P  IEIYDNSH+ G + VG MV   +  + K  
Sbjct: 360 INIHL--KNNDLSLMEELKHYFELENVPHCIEIYDNSHLQGVAKVGAMVCFKDGKWEKKH 417

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF+L     + + D   M+ VL R                + +++   S PD+ ++DG
Sbjct: 418 YRKFHL-----QGKSDYEQMKEVLIR----------------RTKDFESLSPPDLWLIDG 456

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGP-----KRSAGMEKFFVKKGEALVLNMRDPI 526
           GK  L  A  ++K       +  IS  K        + +  +K   KKGE  +L   D  
Sbjct: 457 GKALLDLANNIIKSTGANVDVLAISKEKIDFKAQRSKGSARDKIHSKKGE-FLLKTDDKK 515

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L F+Q+LRDEAHRFA++ H+  +KK     S L  + GI     + LL  +G  + I  +
Sbjct: 516 LQFLQKLRDEAHRFALSFHKNTKKKQDLKSSKLLNL-GISEGYLQKLLAFYGDFESIYEA 574

Query: 585 SPETLASIEGISKKIACKIYN 605
           + E L  +   + KIA KI +
Sbjct: 575 NYEELKMLT--NAKIAQKIKD 593


>gi|330885590|gb|EGH19739.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 447

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 155/463 (33%), Positives = 243/463 (52%), Gaps = 22/463 (4%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E EALLLE 
Sbjct: 1   MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
            +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  A+ ++
Sbjct: 61  TLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSAGAIRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  +  FL G 
Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252
           ++ L +++   M +A +  D+E A   RD++A L  +Q+          +D  + + N  
Sbjct: 180 SNALSDELNATMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239

Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLSEEA 309
            AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  ++++   
Sbjct: 240 GACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEVIVNVIN 299

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369
           ++      +  +  G ++ I+   +G + +  + A+ NA ++ T +L+         +  
Sbjct: 300 DDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVASRFEAL 359

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429
            K   L   P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V   DD A
Sbjct: 360 AKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VTAGDDYA 417

Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
            M   L RR+S++   E  L              PDV+++DGG
Sbjct: 418 AMHQALTRRYSRIKAGEGKL--------------PDVLLVDGG 446


>gi|325996102|gb|ADZ51507.1| Excinuclease ABC subunit C [Helicobacter pylori 2018]
          Length = 594

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 168/600 (28%), Positives = 274/600 (45%), Gaps = 52/600 (8%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62
           GVYQ  D   ++LY+GKA NL+KRIKSY          +   + R+  M+ QI  +   +
Sbjct: 16  GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNPRASLRVQMMVKQIAFLETIL 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121
              E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R         Y
Sbjct: 76  VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  +I+ E+Y+
Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I          
Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D F+ Y   N A +   F   G+   +    + + +     + +   +   Y    
Sbjct: 251 LYDLDIFAFYGGNNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310

Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
              PE ILLS    E    L+     QY  K+ + +PK+G+K  +IE A+ NA       
Sbjct: 311 PLMPEQILLSACSNETLKELQEFISHQYSKKIVLNIPKKGDKLALIEIAMKNAQE--IFS 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                S   IL++    F L  +P R+EI+D SH      VG MVV   N F K+ YR++
Sbjct: 369 QEKTSSEDRILEEARSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNVFQKDSYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           +L        ++   M  +L RR     K                   P++ ++DGG+ Q
Sbjct: 429 HLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLWVIDGGRAQ 467

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529
           L+ A  +LK     + + +I+I+K  +         G +           L   D  L +
Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDVIHTISNTFKLLPSDKRLQW 525

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + I ++S + 
Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585


>gi|307637513|gb|ADN79963.1| Excinuclease ABC subunit C [Helicobacter pylori 908]
 gi|325997698|gb|ADZ49906.1| Excinuclease ABC subunit C [Helicobacter pylori 2017]
          Length = 594

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 168/600 (28%), Positives = 274/600 (45%), Gaps = 52/600 (8%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62
           GVYQ  D   ++LY+GKA NL+KRIKSY          +   + R+  M+ QI  +   +
Sbjct: 16  GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNPRASLRVQMMVKQIAFLETIL 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121
              E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R         Y
Sbjct: 76  VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  +I+ E+Y+
Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I          
Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D F+ Y   N A +   F   G+   +    + + +     + +   +   Y    
Sbjct: 251 LYDLDIFAFYGGNNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310

Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
              PE ILLS    E    L+     QY  K+ + +PK+G+K  +IE A+ NA       
Sbjct: 311 PLMPEQILLSACSNETLKELQEFISHQYSKKIVLNIPKKGDKLALIEIAMKNAQE--IFS 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                S   IL++    F L  +P R+EI+D SH      VG MVV   N F K+ YR++
Sbjct: 369 QEKTSSEDRILEEARSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAFQKDSYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           +L        ++   M  +L RR     K                   P++ ++DGG+ Q
Sbjct: 429 HLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLWVIDGGRAQ 467

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529
           L+ A  +LK     + + +I+I+K  +         G +           L   D  L +
Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDVIHTISNTFKLLPSDKRLQW 525

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + I ++S + 
Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585


>gi|317009168|gb|ADU79748.1| excinuclease ABC subunit C [Helicobacter pylori India7]
          Length = 594

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 169/600 (28%), Positives = 278/600 (46%), Gaps = 52/600 (8%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62
           GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ QI  +   +
Sbjct: 16  GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNNEITPNHRASLRIQMMVKQIAFLETIL 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121
              E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R         Y
Sbjct: 76  VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  +I+ E+Y+
Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCENKITKEEYL 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I          
Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSNNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D F+ Y   N A +   F   G+   +    + + +     + +   +   Y    
Sbjct: 251 LYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310

Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
              PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ NA       
Sbjct: 311 PLMPEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIETAMKNAQE--IFS 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                +  +IL++    F L  +P R+EI+D SH      VG MVV   N F K+ YR++
Sbjct: 369 QEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENNAFQKDSYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           +L        D+ A M  +L RR     K                   P++ ++DGG+ Q
Sbjct: 429 HLK-----GSDEYAQMSELLTRRALDFAKE----------------PPPNLWVIDGGRAQ 467

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529
           L+ A  +LK     + + +I+I+K  +         G +           L   D  L +
Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRAKGGAKDIIHTSTNTFKLLPSDKRLQW 525

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + I ++S + 
Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585


>gi|317011039|gb|ADU84786.1| excinuclease ABC subunit C [Helicobacter pylori SouthAfrica7]
          Length = 594

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 168/600 (28%), Positives = 280/600 (46%), Gaps = 52/600 (8%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62
           GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + RI  M+ QI  +   +
Sbjct: 16  GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIHNNEITPNHRASLRIQMMVKQIAFLETIL 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121
              E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R         Y
Sbjct: 76  VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKY 135

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  +I+ E+Y+
Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E  + +   +  + +++   M++ +    +E A+I+RDR++ +  I          
Sbjct: 192 KIAKECLEMIENKDKLI-KELQLKMDRLSSNLRFEEALIYRDRISKIQKIAPFTCMDLAK 250

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D F+ Y   N A +   F   G+   +    + + +E    + +   +   Y    
Sbjct: 251 LYDLDIFAFYGKNNKAVLVKMFMRGGKIISSAFEKIHSLNEFDADEAMKQAIINHYQSHL 310

Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
              PE ILLS    E    L+     ++  K+ + +PK+G+K  +IE A+ NA       
Sbjct: 311 PLMPEQILLSACSNETLKELQEFINHKHSKKIALNIPKKGDKLALIEIAMKNAQE--IFS 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                + + IL++    F L  +P R+EI+D SH      VG MVV   N F KN YR++
Sbjct: 369 QEKTSNEEEILEEVRSLFNLECVPYRVEIFDTSHHANSQCVGGMVVYENNAFQKNSYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           +L        ++   M  +L RR    IK                   P++ ++DGG+ Q
Sbjct: 429 HLK-----GLNEYTQMSELLTRRALDFIKE----------------PPPNLWVIDGGRVQ 467

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529
           L+ A  +LK     + + +I+I+K  +         G +       +   L   D  L +
Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLLPSDKRLQW 525

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + I ++S + 
Sbjct: 526 VQKLRDESHRYAINFHRSTKIKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 585


>gi|82523814|emb|CAI78557.1| exconuclease ABC subunit C [uncultured Chloroflexi bacterium]
          Length = 500

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 168/506 (33%), Positives = 267/506 (52%), Gaps = 17/506 (3%)

Query: 115 STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
           S     Y+GP+ SV AV +T++ L+R F   +C   +     R CL + IK C+ PC G 
Sbjct: 2   SDDGARYYGPYTSVWAVHQTLDVLRRIFPYLTCDREITGGDARACLYYDIKLCTAPCIGM 61

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           I+   Y + + +  +FL G    +  ++  +MNQA    ++E A   RD++ A+  +   
Sbjct: 62  INQAGYRQMIDDLGQFLEGRTEPIVTRLRADMNQAAEALNFERAAALRDQIQAIERVVEK 121

Query: 235 NDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291
              + +     D  ++      AC+Q  F   G+  G   F ++  +ES +A +++ FL+
Sbjct: 122 QKVVSSDYIDSDVVAMARTDGEACVQVFFIRSGKLIGREYFLMEGAAESPDADVITGFLK 181

Query: 292 QFYTDKP-CPENILLSEEAEETSL-LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
           QFY   P  P  +LL  E EE ++  E    ++ G KV++ +P+ G ++++++ A  NA 
Sbjct: 182 QFYDQAPNVPPEVLLPTEIEEMNIIREWLNSRRGGQKVELHIPRLGPQQELMQMAAENAS 241

Query: 350 RS----HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGEN 405
            +      Q  +     +  L +      LP  P RIE YD S+  G +AVG MVV  + 
Sbjct: 242 ATLSALQAQWQADTHRQEQALAELQTALDLPEAPNRIECYDISNTQGTAAVGSMVVFEQG 301

Query: 406 GFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPD 465
              K+ YR+FN+    V   DD A M  VL RRFS+    ++      KK + +F   PD
Sbjct: 302 VPKKSLYRRFNIRS--VSGPDDFASMEEVLTRRFSRWQATQDASQAPGKKPDPAFSLLPD 359

Query: 466 VVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDP 525
           ++++DGGKGQLS A+ VL++  +  R  + S+AK        E F   + E+L+L     
Sbjct: 360 LLLVDGGKGQLSRAEAVLERFELTGRFFLASLAK-----HNEELFIPGQSESLLLPRHSQ 414

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            LY +QR+RDEAHR+AIT+HR+RR KA   S LD + GIGP+R++ LL  FG ++ I ++
Sbjct: 415 ALYLVQRVRDEAHRYAITSHRQRRDKAGIASQLDTVPGIGPMRRKALLAHFGGLQQIRQA 474

Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610
           S E L +I GI+ K+A  I     + 
Sbjct: 475 STEELLTIPGITIKLAQAIRETLGQE 500


>gi|225550721|ref|ZP_03771670.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225379875|gb|EEH02237.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 584

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 133/594 (22%), Positives = 260/594 (43%), Gaps = 38/594 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   D   +++Y+GKA +L  R  SY +     ++ + ++S I ++ + 
Sbjct: 8   KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V     EAL+LE N+IK  +P++NILL+D  ++PYI+IT+  + P L   R     +G Y
Sbjct: 67  VVNNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP A      +  N L   F    C     +     C+ + + RC      ++  + Y 
Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPHQK----CIYYDLHRC----INQVQPQTYE 177

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + E K+   G   ++   +      A  K D+E+A  + ++  AL++I N      + 
Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D    Y   N   I    +  G+             +    ++++ FL Q+Y+   
Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNK 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
               I++S   ++ +LL +S   +  +    T   +   +   + A++    +    ++ 
Sbjct: 297 ISTKIIVS--LDDDNLLALSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSIINK 354

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L    +   LP +   IE +DNS+I     +  M+V           RK+NL 
Sbjct: 355 QNELDEALNQLKQILKLPDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               K   D   M  V+ RR+ +L+   + L              P+++++DGGK Q++A
Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
               L++L +   I +I + K  K         +  G+ ++L+ +  +  F+  ++++ H
Sbjct: 458 TLYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            +AI+  R +  K+ + S L+++ G+G  R   LL  + ++  +  +S + L  
Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQ 567


>gi|171920846|ref|ZP_02696210.2| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|188024477|ref|ZP_02997124.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188518228|ref|ZP_03003763.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|171903048|gb|EDT49337.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|188018591|gb|EDU56631.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188998241|gb|EDU67338.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
          Length = 584

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 136/612 (22%), Positives = 267/612 (43%), Gaps = 40/612 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   D   +++Y+GKA +L  R  SY +     ++ + ++S I ++ + 
Sbjct: 8   KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V     EAL+LE N+IK  +P++NILL+D  ++PYI+IT+  + P L   R     +G Y
Sbjct: 67  VVSNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP A      +  N L   F    C     +     C+ + + RC      ++  + Y 
Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPHQK----CIYYDLHRC----INQVQPQTYE 177

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + E K+   G   ++   +      A  K D+E+A  + ++  AL++I N      + 
Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D    Y   N   I    +  G+             +    ++++ FL Q+Y+   
Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNK 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
               I++S   ++ +LL +S   +  +    T   +   +   + A++    +    ++ 
Sbjct: 297 ISTKIIVS--LDDDNLLALSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSVINK 354

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L    +   LP +   IE +DNS+I     +  M+V           RK+NL 
Sbjct: 355 QNELDEALNQLKQILKLPDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               K   D   M  V+ RR+ +L+   + L              P+++++DGGK Q++A
Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L++L +   I +I + K  K         +  G+ ++L+ +  +  F+  ++++ H
Sbjct: 458 ALYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
            +AI+  R +  K+ + S L+++ G+G  R   LL  + ++  +  +S + L     + K
Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQF--LPK 571

Query: 598 KIACKIYNHFHK 609
            +   +    +K
Sbjct: 572 NVLVNLREKLNK 583


>gi|188524411|ref|ZP_03004432.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|198273782|ref|ZP_03206316.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|195659903|gb|EDX53283.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|198249537|gb|EDY74319.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
          Length = 584

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 134/594 (22%), Positives = 261/594 (43%), Gaps = 38/594 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   D   +++Y+GKA +L  R  SY +     ++ + ++S I ++ + 
Sbjct: 8   KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V     EAL+LE N+IK  +P++NILL+D  ++PYI+IT+  + P L   R     +G Y
Sbjct: 67  VVNNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP A      +  N L   F    C     +     C+ + + RC      ++  + Y 
Sbjct: 126 FGPLADSTNKYQLFNLLNSIFSFNKCNHQPHQK----CIYYDLHRC----INQVQPQTYE 177

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + E K+   G   ++   +      A  K D+E+A  + ++  AL++I N      + 
Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D    Y   N   I    +  G+             +    ++++ FL Q+Y+   
Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNK 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
               I++S   ++ +LL +S   +  +    T   +   +   + A++    +    ++ 
Sbjct: 297 ISTKIIVS--LDDDNLLSLSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSVINK 354

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L    +   LP +   IE +DNS+I     +  M+V           RK+NL 
Sbjct: 355 QNELDEALNQLKQILKLPDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               K   D   M  V+ RR+ +L+   + L              P+++++DGGK Q++A
Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L++L +   I +I + K  K         +  G+ ++L+ +  +  F+  ++++ H
Sbjct: 458 ALYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            +AI+  R +  K+ + S L+++ G+G  R   LL  + ++  +  +S + L  
Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQ 567


>gi|209554512|ref|YP_002284817.1| excinuclease ABC subunit C [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|226698806|sp|B5ZBM7|UVRC_UREU1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|209542013|gb|ACI60242.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
          Length = 584

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 136/612 (22%), Positives = 267/612 (43%), Gaps = 40/612 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   D   +++Y+GKA +L  R  SY +     ++ + ++S I ++ + 
Sbjct: 8   KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V     EAL+LE N+IK  +P++NILL+D  ++PYI+IT+  + P L   R     +G Y
Sbjct: 67  VVNNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP A      +  N L   F    C     +     C+ + + RC      ++  + Y 
Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPHQK----CIYYDLHRC----INQVQPQTYE 177

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + E K+   G   ++   +      A  K D+E+A  + ++  AL++I N      + 
Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D    Y   N   I    +  G+             +    ++++ FL Q+Y+   
Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNR 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
               I++S   ++ +LL +S   +  +    T   +   +   + A++    +    ++ 
Sbjct: 297 ISTKIIVS--LDDDNLLALSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSVINK 354

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L    +   LP +   IE +DNS+I     +  M+V           RK+NL 
Sbjct: 355 QNELDEALNQLKQILKLPDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               K   D   M  V+ RR+ +L+   + L              P+++++DGGK Q++A
Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L++L +   I +I + K  K         +  G+ ++L+ +  +  F+  ++++ H
Sbjct: 458 ALYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
            +AI+  R +  K+ + S L+++ G+G  R   LL  + ++  +  +S + L     + K
Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQF--LPK 571

Query: 598 KIACKIYNHFHK 609
            +   +    +K
Sbjct: 572 NVLVNLREKLNK 583


>gi|312877167|ref|ZP_07737137.1| excinuclease ABC, C subunit [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796067|gb|EFR12426.1| excinuclease ABC, C subunit [Caldicellulosiruptor lactoaceticus 6A]
          Length = 527

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 169/550 (30%), Positives = 266/550 (48%), Gaps = 35/550 (6%)

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T  EVEAL+LE N+IK  +P++N+LLRDDK++ YI IT+    P L   R        YF
Sbjct: 2   TDNEVEALILECNLIKEYRPKYNVLLRDDKNYQYIKITN-EMFPRLVTTRKVEKDGSRYF 60

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKY 180
           GP+ S  +V++T+  L+  F LR+C         + RPCL F I++C G C G++S E+Y
Sbjct: 61  GPYVSGYSVKQTVELLKSLFMLRTCKKKFPDQLGKGRPCLNFHIEKCLGVCKGDVSEEEY 120

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            + V  A K LSG    + E++   M +      +E A   +++L++L  I      IY 
Sbjct: 121 QKLVDRAVKVLSGKGDEIVEELKAKMFEYAENLMFEKAQEIKNKLSSLEQIITKQKVIYA 180

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
                D  +   +     I       G+      F LK + +         FL Q+Y+D 
Sbjct: 181 DDRSEDVINFAKDDAHIAIVVLIIRNGKLINKEEFVLKAEED-----TFERFLEQYYSDV 235

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ I++    E    +E    K YG+KVK+T+PKQGEK+++++ A  NA  S   + 
Sbjct: 236 VSLPKEIIIPHRIENADNIEKMIEKLYGFKVKVTIPKQGEKKQLLDMAKKNAEISLANRQ 295

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             +  +   L +      L +  ++IE YD S+I G   VG +VV  +  F K  YRKF 
Sbjct: 296 RVDDVYAEALLNLKNMLGLENEIEKIESYDISNIAGADNVGTLVVFEDGKFNKEFYRKFK 355

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +     + QDD   ++ VL RR + L K                   PD++++DGG+ Q+
Sbjct: 356 IKG--FEGQDDIRSVKEVLTRRLTNLEK---------------HGRIPDLILIDGGQNQV 398

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           +AA  VL  L     I +  + K  +         +  G+ + +     +   I  +++E
Sbjct: 399 NAALEVLNTLGFS--IPVAGMVKDDRHKTRD---LIYNGKEVGIQEYPLVYKLIYAIQEE 453

Query: 537 AHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            HRF +  HR+ RKK    S LDEI GIG  RK  L ++FG++  + ++S E +     I
Sbjct: 454 THRFVVKFHREVRKKHLYESILDEIEGIGEKRKLKLFRTFGSIDNLRKASIEEIVKAADI 513

Query: 596 SKKIACKIYN 605
             ++A KI  
Sbjct: 514 PYEVALKIKE 523


>gi|57242395|ref|ZP_00370333.1| excinuclease ABC, C subunit [Campylobacter upsaliensis RM3195]
 gi|57016680|gb|EAL53463.1| excinuclease ABC, C subunit [Campylobacter upsaliensis RM3195]
          Length = 595

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 194/621 (31%), Positives = 298/621 (47%), Gaps = 55/621 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH------SNNHTHRITHMISQINNI 58
            +PE  GVYQ  +  G++LYVGKA NL+KR+KSY        ++ +  RI  MIS+  ++
Sbjct: 8   SLPESAGVYQYFNAEGKLLYVGKAKNLKKRVKSYFSFNPLRANSKNNLRIQKMISEAAHL 67

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-DSSTI 117
           +F  T TE  AL+LE ++IK+L P++NILLRDDK++PYI I    K P     R      
Sbjct: 68  KFISTKTEANALILENSLIKQLHPKYNILLRDDKTYPYIYIDLNEKFPRFELTRKIIKKP 127

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
           +  Y+GPF      ++ +N+L   + L+   +       + C+  QI RCSG C   IS 
Sbjct: 128 KIKYYGPF--FKGAKELLNALYLYYPLKQKKNC-----KKLCIFHQISRCSGVCENLISE 180

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E Y E +  A K +   +  + + + + M +    E+YE A   RD + A+  ++     
Sbjct: 181 ENYKEILANATKAILNPSILI-KNLEQVMLKYAHNENYEEAAKVRDEINAIKALETKVQI 239

Query: 238 ---IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCT--FFLKTDSESTNAQILSYFLRQ 292
                   + F+L     +          G+   T +    LK     TN       L  
Sbjct: 240 DLARLEDFEIFALASENGICSTLRFIIQEGKIISTHSKIHILKEKEIHTNEIYKQVLLES 299

Query: 293 FYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
           F  D P     I + E+ E+  LLE    +++  K+ I VP++GEKRKI + A  NA  +
Sbjct: 300 FNQDSPLVSNQIYVYEDFEDRKLLEELLSERFAKKIHIQVPQKGEKRKICDLAFENALLN 359

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
               L+       ++++    F L ++P  IEIYDNSH+ G + VG MV   +  + K  
Sbjct: 360 INIHLNNND--LSLMEELKHYFELENVPHCIEIYDNSHLQGVAKVGAMVCFKDGKWEKKH 417

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF+L     + + D   M+ VL R                + +++   S PD+ ++DG
Sbjct: 418 YRKFHL-----QGKSDYEQMKEVLIR----------------RTKDFESLSPPDLWLIDG 456

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAK---GPKRSAG--MEKFFVKKGEALVLNMRDPI 526
           GK  L  A  ++K       +  IS  K     +RS G   +K   KKGE  +L   D  
Sbjct: 457 GKALLDLASSIIKSTGANVDVLAISKEKIDFKAQRSKGNARDKIHSKKGE-FLLKTDDKK 515

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L F+Q+LRDEAHRFA++ H+  +KK     S L  + GI     + LL  +G  + I  +
Sbjct: 516 LQFLQKLRDEAHRFALSFHKNTKKKQDLKSSKLLNL-GISEGYLQKLLAFYGDFESIYEA 574

Query: 585 SPETLASIEGISKKIACKIYN 605
           + E L  +   + KIA KI +
Sbjct: 575 NYEELKMLT--NAKIAQKIKD 593


>gi|185178930|ref|ZP_02964691.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|225551060|ref|ZP_03772006.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|184209193|gb|EDU06236.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|225378875|gb|EEH01240.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
          Length = 584

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 134/612 (21%), Positives = 266/612 (43%), Gaps = 40/612 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   D   +++Y+GKA +L  R  SY +     ++ + ++S I ++ + 
Sbjct: 8   KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V     EAL+LE N+IK  +P++NILL+D  ++PYI+IT+  + P L   R     +G Y
Sbjct: 67  VVNNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP A      +  N L   F    C     +     C+ + + +C      ++  + Y 
Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPHQK----CIYYDLHQC----INQVQPQTYE 177

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + E K+   G   ++   +      A  K D+E+A  + ++  AL++I N      + 
Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D    Y   N   I    +  G+             +    ++++ FL Q+Y+   
Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNK 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
               I++S   ++ +LL +S   +  +    T   +   +   + A++    +    ++ 
Sbjct: 297 ISTKIIVS--LDDDNLLALSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSVINK 354

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L    +   L  +   IE +DNS+I     +  M+V           RK+NL 
Sbjct: 355 QNELDEALNQLKQILKLSDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               K   D   M  V+ RR+ +L+   + L              P+++++DGGK Q++A
Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L++L +   I +I + K  K         +  G+ ++L+ +  +  F+  ++++ H
Sbjct: 458 ALYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
            +AI+  R +  K+ + S L+++ G+G  R   LL  + ++  +  +S + L     + K
Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQF--LPK 571

Query: 598 KIACKIYNHFHK 609
            +   +    +K
Sbjct: 572 NVLVNLREKLNK 583


>gi|256384249|gb|ACU78819.1| excinuclease ABC subunit C [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256385082|gb|ACU79651.1| excinuclease ABC subunit C [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455738|gb|ADH21973.1| excinuclease ABC subunit C [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 584

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 142/611 (23%), Positives = 267/611 (43%), Gaps = 35/611 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   +    V+YVGKA NL+KR+ +Y +   +  + T ++ +I ++++ 
Sbjct: 6   QVDLLPNKPGCYLFFNKDNDVIYVGKAKNLKKRVSTYFNKA-YNIKTTRLVREITDLKYF 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E E+LLLE N+IK+  P++N+LL DDK++PYI+IT++   P     R         
Sbjct: 65  IVDNEKESLLLEKNLIKKYHPKYNVLLNDDKTYPYIIITNQKD-PMYKYVRKYDKKALKN 123

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP          + +LQR F LR C  ++     +PCL + + +CSG C  ++    Y 
Sbjct: 124 YGPLPIGSNARSILLTLQRLFPLRMCQGNL----NKPCLYYHLNQCSGACFKQVDLSYYE 179

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             + +  KF  G  + +K+ + + M +A+    +E A   +D++ +L  I    +     
Sbjct: 180 YQIKQVDKFFKGEINQVKQTLIKQMQKASDNLQFEQAQRIKDQITSLDFITAKQNVDIVT 239

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D  +   N++  C    F+  GQ       +++       +++ + +L+Q Y    
Sbjct: 240 NKNIDVINYEINQDKICFVMLFYRLGQLTYKD-EYIQNYEGQNLSELFNSYLQQIYQKNI 298

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ +L+  E E   L +           K         ++    +L  +  SH      
Sbjct: 299 YPDVLLIPNEIELLDLDQNLLEFSSYSLNKQDDVFIKLAKQNAIDSLNKSVISHNVNSGD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E     IL+   +        KRIEI+D S+I      G  +V      ++N++RK+N+ 
Sbjct: 359 E---IEILEQLKQISNASKYLKRIEIFDISNIYNQFITGACIVYINAKPIRNEFRKYNID 415

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            +          M    +R   ++ + E+                PD++I+DGG  Q+ A
Sbjct: 416 SSYTSDYARMKFMLE--KRFLKRIKEKEQ---------------LPDLIIVDGGIIQIHA 458

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL KLN+  +I +I ++K             +  + + +     +  F+  L+    
Sbjct: 459 AKEVLNKLNL--KIDVIGLSKDDHHKTRYLIDIFE--QTIDIKNFKKLYNFLTSLQIRVD 514

Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            +A +  RK+        +  I G+G      L + F T+  I  +S + L  +   +KK
Sbjct: 515 EYAKSGFRKKYHNQLNDQILLIKGVGKKTNLKLYKHFKTIDNIKNASFDELNKVIN-NKK 573

Query: 599 IACKIYNHFHK 609
           I   I ++ +K
Sbjct: 574 ITNLIISNLNK 584


>gi|195867851|ref|ZP_03079850.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|195660428|gb|EDX53686.1| excinuclease ABC, C subunit [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
          Length = 584

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 134/612 (21%), Positives = 266/612 (43%), Gaps = 40/612 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   D   +++Y+GKA +L  R  SY +     ++ + ++S I ++ + 
Sbjct: 8   KLKLIPHKPGCYLWKDEFDQIIYIGKAKDLYNRTHSYFNGP-KDNKTSKLVSNIKDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V     EAL+LE N+IK  +P++NILL+D  ++PYI+IT+  + P L   R     +G Y
Sbjct: 67  VVNNVNEALILENNLIKTHRPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP A      +  N L   F    C     +     C+ + + +C      ++  + Y 
Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPHQK----CIYYDLHQC----INQVQPQTYE 177

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + E K+   G   ++   +      A  K D+E+A  + ++  AL++I N      + 
Sbjct: 178 KAIAEVKEIFKGNLDHILAILENKEQHAVAKLDFENAQKYAEQQKALTYIINSGLVQLDN 237

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D    Y   N   I    +  G+             +    ++++ FL Q+Y+   
Sbjct: 238 NESFDVVGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDHEINELITSFLMQYYSQNK 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
               I++S   ++ +LL +S   +  +    T   +   +   + A++    +    ++ 
Sbjct: 297 ISTKIIVS--LDDDNLLALSQRFKTKFINAQTKFHKQILKLAFDNAILYFDSNIKSAINK 354

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L    +   L  +   IE +DNS+I     +  M+V           RK+NL 
Sbjct: 355 QNELDEALNQLKQILKLSDLSM-IECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               K   D   M  V+ RR+ +L+   + L              P+++++DGGK Q++A
Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L++L +   I +I + K  K         +  G+ ++L+ +  +  F+  ++++ H
Sbjct: 458 ALYALEQLQIS--IPLIGLKKDQKHKTNA--IVLANGDEIILDRKSVLYKFLANMQNDVH 513

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
            +AI+  R +  K+ + S L+++ G+G  R   LL  + ++  +  +S + L     + K
Sbjct: 514 NYAISFLRNKHTKSIFNSLLNDVQGLGKKRLNELLNYYDSINDLKSASDQELLQF--LPK 571

Query: 598 KIACKIYNHFHK 609
            +   +    +K
Sbjct: 572 NVLVNLREKLNK 583


>gi|15611827|ref|NP_223478.1| excinuclease ABC subunit C [Helicobacter pylori J99]
 gi|8134805|sp|Q9ZL21|UVRC_HELPJ RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|4155322|gb|AAD06337.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
          Length = 594

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 167/600 (27%), Positives = 275/600 (45%), Gaps = 52/600 (8%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQINNIRFTV 62
           GVYQ  D   ++LY+GKA NL+KRIKSY          +   + R+  M+ QI  +   +
Sbjct: 16  GVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNPRTSLRVQMMVKQIAFLETIL 75

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS-STIQGSY 121
              E +AL+LE ++IK+LKP++NILLRDDK++PYI +      P     R         Y
Sbjct: 76  VENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSIDFPIPLITRKILKQPGVKY 135

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S    +  ++SL     L    + +     + C+ +QI+RC  PC  +I+ E+Y+
Sbjct: 136 FGPFTSG--AKDILDSLYELLPLVQKKNCI--KDKKACMFYQIERCKAPCEDKITKEEYL 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
           +   E  + +   +  + +++   M + +    +E A+I+RDR+A +  I          
Sbjct: 192 KIAKECLEMIENKDRLI-KELELKMERLSSNLRFEEALIYRDRIAKIQKIAPFTCMDLAK 250

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D F+ Y   N A +   F   G+   +    + + +     + +   +   Y    
Sbjct: 251 LYDLDIFAFYGGNNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHL 310

Query: 299 C--PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
              PE ILLS    E    L+     QY  K+ +++PK+G+K  +IE A+ NA       
Sbjct: 311 PLMPEQILLSACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMKNAQE--IFS 368

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
                +   IL++    F L  +P R+EI+D SH      VG MVV   N F K+ YR++
Sbjct: 369 QEKTSNEDRILEEARSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAFQKDSYRRY 428

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           +L        ++   M  +L RR     K                   P++ ++DGG+ Q
Sbjct: 429 HLK-----GSNEYDQMSELLTRRALDFAKE----------------PPPNLWVIDGGRAQ 467

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVKKGEALVLNMRDPILYF 529
           L+ A  +LK     + + +I+I+K  +         G +           L   D  L +
Sbjct: 468 LNIALEILKSSG--SFVEVIAISKEKRDSKAYRSKGGAKDIIHTISHTFKLLPSDKRLQW 525

Query: 530 IQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +Q+LRDE+HR+AI  HR  + K      L +  GIG    + LL  FG+ + I ++S + 
Sbjct: 526 VQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASDQE 585


>gi|197294510|ref|YP_001799051.1| excinuclease ABC subunit C [Candidatus Phytoplasma australiense]
 gi|171853837|emb|CAM11786.1| Nuclease subunit of the excinuclease complex [Candidatus
           Phytoplasma australiense]
          Length = 597

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 163/624 (26%), Positives = 278/624 (44%), Gaps = 51/624 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   +    ++YVGKA  L+KR++SY     H  + T M+ +I+++ + 
Sbjct: 7   KIKNLPLNPGCYLFKNKNNTIIYVGKAKKLRKRVQSYFIK-GHNRKTTCMVQEISDVFYV 65

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS- 120
           +T  E EAL+LEAN+IK   P++N  L DDK++PY+ IT + K P L   R      G  
Sbjct: 66  ITNNEQEALILEANLIKEHTPKYNFKLLDDKTYPYLEIT-QEKDPQLKISRFKKIPPGKV 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP+ ++++ ++T+  L   + L            +PCL F I +C GPC   + +  Y
Sbjct: 125 LFGPYPNLNSTKETLKLLHFLYPL----RRCPLSAKKPCLHFHINQCLGPC--ALKNVDY 178

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              +     FL G    + +KI   M +A+ +  YE A  +RD L  + +        + 
Sbjct: 179 RPNIEAITNFLKGDTKIILKKIKLLMQEASQQRFYEKAQEYRDMLIHIQNTTKKQIISHQ 238

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +  +N +   IQ      G    +              + ++ +L  +Y  K
Sbjct: 239 KIKNCDILAYVYNDDQIAIQILKMQQGNIVDSHRSVFSYVGY--PQENINNYLALYYQSK 296

Query: 298 PCPENILL-----------SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
             PE I+            S   ++ ++L  +       K K+ V K G+K+K+   AL 
Sbjct: 297 LKPELIITGKNTHNLTSPESNTQQQEAILFSAELLSQTLKTKVVVAKIGDKKKLYSLALK 356

Query: 347 NAHRSHTQKLSTEISHQMILKDF--TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
           NA     Q      S    +++             KRI+++DNS + G + V   +V  +
Sbjct: 357 NAQNDLMQNNLLYQSKDQAIQEALDQLAIIFNKDIKRIDVFDNSQLFGQAFVSARIVFDQ 416

Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
             F K  YR F++  ND    ++      VL R + +  K E                 P
Sbjct: 417 FDFKKPLYRVFHIKDND---PNEFTSFEEVLTRSYQKKDKEE--------------LVKP 459

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           +++++DGG  QL A    L +LN++  I + ++ K  K    +E       + + L  + 
Sbjct: 460 NLILVDGGLWQLKAGFQALNQLNLD--IALGALQKNDKHQ--LECLLTSHNK-IALTPKP 514

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISR 583
            +  F++RL +E HRF +  H K + K    + L +I GIG  R +++L  F + + + +
Sbjct: 515 RLFAFLKRLSEEVHRFVVKFHHKTKNKLDYQTVLSQIKGIGAKRHKIILNHFNSWEDLKK 574

Query: 584 SSPETLASIEGISKKIACKIYNHF 607
           +S ET   I GISK+I   I +  
Sbjct: 575 ASWETFEKI-GISKEIFEAIKSKL 597


>gi|307326032|ref|ZP_07605230.1| excinuclease ABC, C subunit [Streptomyces violaceusniger Tu 4113]
 gi|306888254|gb|EFN19242.1| excinuclease ABC, C subunit [Streptomyces violaceusniger Tu 4113]
          Length = 736

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 227/472 (48%), Gaps = 16/472 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
              Q+PE PGVY+  D  GRV+YVGKA +L+ R+ SY     N   R   M++    + +
Sbjct: 10  KPGQIPESPGVYKFRDEHGRVIYVGKAKSLRPRLSSYFQDLANLHPRTRTMVTTAAAVEW 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TEVEAL LE + IK   PRFN+  RDDKS+P++ +T   + P +   R +      
Sbjct: 70  TVVSTEVEALQLEYSWIKEFDPRFNVKYRDDKSYPFLAVTLNEEFPRVQVMRGAKKKGVR 129

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+    A+ +T++ + R F +R+C+  VF+      RPCLL  I +CS PC G +++
Sbjct: 130 YFGPYGHAWAIRETVDLMLRVFPVRTCSAGVFKRSAQIGRPCLLGYIGKCSAPCVGRVTA 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E++ E   E   F++G       ++ + M++A    +YE A   RD + AL      N  
Sbjct: 190 EEHRELAEEFCDFMAGRTGTYLRRLEQQMHEAAEDMEYEKAARLRDDIGALKRAMEKNAV 249

Query: 238 IY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           +       D  ++  ++  A +Q      G+ RG   +          A ++ + L+Q Y
Sbjct: 250 VLADATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDTAGLVEHALQQLY 309

Query: 295 TDK---PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            ++     P+ +L+    +    +     ++ G  V + +P++G+K+ +++    NA ++
Sbjct: 310 GEERGDAVPKEVLVPAVPDPAEPVTQWLTERRGSLVDLRIPQRGDKKDLMQTVQRNAQQA 369

Query: 352 HTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGF 407
                +   S        L++  +   L   P R+E +D SH+ G   V  MVV  +   
Sbjct: 370 LALHKTKRASDLTTRSRALEEIAEALGLDSAPLRVECFDISHLQGDDVVASMVVFEDGLP 429

Query: 408 VKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
            K++YR+F +       QDD   M  V+ RRF + +  ++      ++   +
Sbjct: 430 RKSEYRRFQIKS--FAGQDDVRSMHEVVSRRFRRYLMEKQKTGEWEEQATGA 479



 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 7/160 (4%)

Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504
           +  +     + +   F   P +V++DGGK Q++AAQ  L +L V++ + +  +AK  +  
Sbjct: 544 DGPSGPIDEEGRPKRFAYPPQLVVVDGGKPQVAAAQRALDELGVDD-VAVCGLAKRLE-- 600

Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGI 563
              E +   + + +VL      LY +QR+RDEAHRFAIT  R +R K+    PLD + G+
Sbjct: 601 ---EVWLPDEEDPVVLPRSSEGLYLLQRVRDEAHRFAITYQRSKRAKSMKAGPLDSVPGL 657

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           G  RK+ LL+ FG+VK +  ++ E +  + G+ +K A  +
Sbjct: 658 GDSRKQALLKHFGSVKRLRAATVEQICEVPGVGRKTAETV 697


>gi|171920374|ref|ZP_02690327.2| excinuclease ABC, C subunit [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|171902806|gb|EDT49095.1| excinuclease ABC, C subunit [Ureaplasma parvum serovar 1 str. ATCC
           27813]
          Length = 584

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 138/612 (22%), Positives = 264/612 (43%), Gaps = 40/612 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   D   +++Y+GKA +L  R  SY +     ++ + +++ IN++ + 
Sbjct: 8   KLKLIPHKPGCYLWKDQFNQIIYIGKAKDLYNRTHSYFNG-CKDNKTSKLVNNINDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V     EAL+LE N+IK   P++NILL+D  ++PYI+IT+  + P L   R     +G Y
Sbjct: 67  VVNNVNEALILENNLIKTHLPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP A      +  N L   F    C    ++     C+ + + +C      ++    Y 
Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPYKK----CIYYDLHQC----INQVQQSTYQ 177

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E + E K+   G   ++   +      A  K D+E+A  + ++  AL+ I N      + 
Sbjct: 178 EAISEVKEIFKGNLDHILMILQTKEQHAVTKLDFENAQKYAEQQKALTSIINSGLVQLDN 237

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D    Y   N   I    +  G+             +    ++++ FL Q+Y+   
Sbjct: 238 NESFDIIGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDYEINELITSFLMQYYSQNK 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
               I++S   ++ +LL +S      +    T   +   +  ++ A++    +    ++ 
Sbjct: 297 ISSKIIVS--LDDDNLLALSQRFHTKFINAQTKFHKQILKLALDNAILYFESNIKNVINK 354

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L    +   LP     IE +DNS+I     +  M+V           RK+NL 
Sbjct: 355 QNELDDALNQLKQILKLP-DLNIIECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               K   D   M  V+ RR+ +L+   + L              P+++++DGGK Q++A
Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L +L +   I +I + K  K         +  G+ +VL+ +  +  F+  ++++ H
Sbjct: 458 ALYALAQLQI--NIPLIGLKKDQKHKTNA--IVLTNGDEIVLDRKSILYKFLANMQNDVH 513

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
            +AI+  R +  K+ + S LD + G+G  R   LL+ + ++  +  +S + L     + K
Sbjct: 514 NYAISFLRDKHTKSIFNSLLDNVQGLGKKRFNELLKYYDSINDLKSASDQELLQF--LPK 571

Query: 598 KIACKIYNHFHK 609
            +   +    +K
Sbjct: 572 NVLVNLREKLNK 583


>gi|183508512|ref|ZP_02689173.2| excinuclease ABC, C subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|182675945|gb|EDT87850.1| excinuclease ABC, C subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 584

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 141/616 (22%), Positives = 264/616 (42%), Gaps = 48/616 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   D   +++Y+GKA +L  R  SY +     ++ + +++ IN++ + 
Sbjct: 8   KLKLIPHKPGCYLWKDQFNQIIYIGKAKDLYNRTHSYFNG-CKDNKTSKLVNNINDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V     EAL+LE N+IK   P++NILL+D  ++PYI+IT+  + P L   R     +G Y
Sbjct: 67  VVNNVNEALILENNLIKTHLPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP A      +  N L   F    C    ++     C+ + + +C      ++    Y 
Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPYKK----CIYYDLHQC----INQVQQSTYQ 177

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E + E K+   G   ++   +      A  K D+E+A  + ++  AL+ I N      + 
Sbjct: 178 EAISEVKEIFKGNLDHILMILQTKEQHAVTKLDFENAQKYAEQQKALTSIINSGLVQLDN 237

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D    Y   N   I    +  G+             +    ++++ FL Q+Y+   
Sbjct: 238 NESFDIIGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDYEINELITSFLMQYYSQNK 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQ 354
               I++S + +    L   F        K    +    ++I++ AL NA      +   
Sbjct: 297 ISSKIIVSLDDDNLLALSQRF------HTKFINAQTKFHKQILKLALDNAILYFESNIKN 350

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            ++ +      L    +   LP     IE +DNS+I     +  M+V           RK
Sbjct: 351 VINKQNELDDALNQLKQILKLP-DLNIIECFDNSNINLSLPIAGMIVYQNGKLNNKLNRK 409

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           +NL     K   D   M  V+ RR+ +L+   + L              P+++++DGGK 
Sbjct: 410 YNLMTT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKL 453

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++AA   L +L +   I +I + K  K     +   +  G+ +VL+ +  +  F+  ++
Sbjct: 454 QVNAALYALAQLQI--NIPLIGLKKDQKHKT--DAIVLTNGDEIVLDRKSILYKFLANMQ 509

Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           ++ H +AI+  R +  K+ + S LD + G+G  R   LL+ + ++  +  +S + L    
Sbjct: 510 NDVHNYAISFLRDKHTKSIFNSLLDNVQGLGKKRFNELLKYYDSINDLKSASDQELLQF- 568

Query: 594 GISKKIACKIYNHFHK 609
            + K +   +    +K
Sbjct: 569 -LPKNVLVNLREKLNK 583


>gi|186701612|ref|ZP_02553940.2| excinuclease ABC, C subunit [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|186700842|gb|EDU19124.1| excinuclease ABC, C subunit [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 584

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 136/594 (22%), Positives = 258/594 (43%), Gaps = 38/594 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   D   +++Y+GKA +L  R  SY +     ++ + +++ IN++ + 
Sbjct: 8   KLKLIPHKPGCYLWKDQFNQIIYIGKAKDLYNRTHSYFNG-CKDNKTSKLVNNINDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V     EAL+LE N+IK   P++NILL+D  ++PYI+IT+  + P L   R     +G Y
Sbjct: 67  VVNNVNEALILENNLIKTHLPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP A      +  N L   F    C    ++     C+ + + +C      ++    Y 
Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPYKK----CIYYDLHQC----INQVQQSTYQ 177

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E + E K+   G   ++   +      A  K D+E+A  + ++  AL+ I N      + 
Sbjct: 178 EAISEVKEIFKGNLDHILMILQTKEQHAVTKLDFENAQKYAEQQKALTSIINSGLVQLDN 237

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D    Y   N   I    +  G+             +    ++++ FL Q+Y+   
Sbjct: 238 NESFDIIGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDYEINELITSFLMQYYSQNK 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
               I++S   ++ +LL +S      +    T   +   +  ++ A++    +    ++ 
Sbjct: 297 ISSKIIVS--LDDDNLLALSQRFHTKFINAQTKFHKRILKLALDNAILYFESNIKNVINK 354

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L    +   LP     IE +DNS+I     +  M+V           RK+NL 
Sbjct: 355 QNELDDALNQLKQILKLP-DLNIIECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               K   D   M  V+ RR+ +L+   + L              P+++++DGGK Q++A
Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L +L +   I +I + K  K         +  G+ +VL+ +  +  F+  ++++ H
Sbjct: 458 ALYALAQLQI--NIPLIGLKKDQKHKTNA--IVLTNGDEIVLDRKSILYKFLANMQNDVH 513

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            +AI+  R +  K+ + S LD + G+G  R   LL+ + ++  +  +S + L  
Sbjct: 514 NYAISFLRDKHTKSIFNSLLDNVQGLGKKRFNELLKYYDSINDLKSASDQELLQ 567


>gi|13357942|ref|NP_078216.1| excinuclease ABC subunit C [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762218|ref|YP_001752464.1| excinuclease ABC subunit C [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|26006902|sp|Q9PQA9|UVRC_UREPA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038127|sp|B1AJ20|UVRC_UREP2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|11356846|pir||H82898 excinuclease ABC subunit c UU381 [imported] - Ureaplasma
           urealyticum
 gi|6899365|gb|AAF30791.1|AE002135_7 excinuclease ABC subunit c [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827795|gb|ACA33057.1| excinuclease ABC, C subunit [Ureaplasma parvum serovar 3 str. ATCC
           27815]
          Length = 584

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 138/612 (22%), Positives = 265/612 (43%), Gaps = 40/612 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG Y   D   +++Y+GKA +L  R  SY +     ++ + +++ IN++ + 
Sbjct: 8   KLKLIPHKPGCYLWKDQFNQIIYIGKAKDLYNRTHSYFNG-CKDNKTSKLVNNINDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V     EAL+LE N+IK   P++NILL+D  ++PYI+IT+  + P L   R     +G Y
Sbjct: 67  VVNNVNEALILENNLIKTHLPKYNILLKDGSNYPYIMITN-EQYPRLKYVRTYDKNKGIY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP A      +  N L   F    C    ++     C+ + + +C      ++    Y 
Sbjct: 126 FGPLADSTNKYQLFNLLNSIFPFNKCNHQPYKK----CIYYDLHQC----INQVQQSTYQ 177

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E + E K+   G   ++   +      A  K D+E+A  + ++  AL+ I N      + 
Sbjct: 178 EAISEVKEIFKGNLDHILMILQTKEQHAVTKLDFENAQKYAEQQKALTSIINSGLVQLDN 237

Query: 242 ---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D    Y   N   I    +  G+             +    ++++ FL Q+Y+   
Sbjct: 238 NESFDIIGFYEKNNYLVIIIFNYVKGKLLNKSADTFAI-YDYEINELITSFLMQYYSQNK 296

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
               I++S   ++ +LL +S      +    T   +   +  ++ A++    +    ++ 
Sbjct: 297 ISSKIIVS--LDDDNLLALSQRFHTKFINAQTKFHKRILKLALDNAILYFESNIKNVINK 354

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      L    +   LP     IE +DNS+I     +  M+V           RK+NL 
Sbjct: 355 QNELDDALNQLKQILKLP-DLNIIECFDNSNINLSLPIAGMIVYQNGKLNNKLNRKYNLM 413

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
               K   D   M  V+ RR+ +L+   + L              P+++++DGGK Q++A
Sbjct: 414 TT--KNASDYHFMIEVITRRYQRLVSQHQKL--------------PNLIVVDGGKLQVNA 457

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L +L +   I +I + K  K     +   +  G+ +VL+ +  +  F+  ++++ H
Sbjct: 458 ALYALAQLQI--NIPLIGLKKDQKHKT--DAIVLTNGDEIVLDRKSILYKFLANMQNDVH 513

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
            +AI+  R +  K+ + S LD + G+G  R   LL+ + ++  +  +S + L     + K
Sbjct: 514 NYAISFLRDKHTKSIFNSLLDNVQGLGKKRFNELLKYYDSINDLKSASDQELLQF--LPK 571

Query: 598 KIACKIYNHFHK 609
            +   +    +K
Sbjct: 572 NVLVNLREKLNK 583


>gi|150400337|ref|YP_001324104.1| excinuclease ABC subunit C [Methanococcus vannielii SB]
 gi|150013040|gb|ABR55492.1| excinuclease ABC, C subunit [Methanococcus vannielii SB]
          Length = 527

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 170/565 (30%), Positives = 273/565 (48%), Gaps = 53/565 (9%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           ++   +P+ PG Y   DI   ++YVGKA NL+KRI SY    NH  +  +++  I +I F
Sbjct: 2   INLSVIPKEPGCYIYRDIEKNIIYVGKAKNLKKRISSYFSKKNHDTKTQNLVKSIFDIEF 61

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT  E+EALLLE+ +IK+  P++NI L+D K++ YI I+ +   P +   R+  + +G 
Sbjct: 62  IVTNNEIEALLLESILIKKHSPKYNIDLKDSKNYAYIYIS-EENFPRIGISRN-KSEKGK 119

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           ++GPF S    +  ++ L++TF +RSC +       RPCL   IK C+ PCTG I+S+KY
Sbjct: 120 FYGPFISAKERDYVLDILKKTFKIRSCKNMQ----KRPCLRHHIKNCTAPCTGNIASKKY 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238
           ++ + +A+  L G   +L  K+   M   +    +E AI+ R+ ++A+ +++   +    
Sbjct: 176 LDQIKKAEYILKGNIESLISKLKDEMIIKSKNLQFEEAILIREEISAIENLKTKQNINRQ 235

Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +         I       G       F  +             FL Q+Y++ 
Sbjct: 236 KNYDEDIIAYIEKDGNIHIIVFNVLKGTLYDKKYFKFEYVEN-----FFEEFLIQYYSEN 290

Query: 298 PCPENILLSEEAEETSLLEISF---------FKQYGYKVKITVPKQGEKRKIIEQALINA 348
             P  I++S   ++       +          K+   KV   VPK+GEK++++  A+ N 
Sbjct: 291 RPPSEIIISGFPKDFEDFSKEYNPNALLEFLSKKRESKVSFKVPKKGEKKELLNLAMKNL 350

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
                            ++    K  L + PK IE +D SH+ G   V  MV   +    
Sbjct: 351 EILVLGNDLK-------VEALKNKLMLENPPKVIECFDISHLSGNFTVASMVQFRDGKAD 403

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YR++ +    V   DD   +  V+ RR+S+L+K                   PD++I
Sbjct: 404 KKNYRRYKIKT--VTGIDDFKSISEVVFRRYSKLLKEN--------------SKMPDLII 447

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQLS+A   LKKLN+  +I ++SIAK  +     E +      AL +   +    
Sbjct: 448 IDGGKGQLSSAFYELKKLNL--KIPVVSIAKREE-----EIYAPGTENALPITKNEKASL 500

Query: 529 FIQRLRDEAHRFAITTHRKRRKKAA 553
           FIQ +RDEAHRFAIT ++  RKK  
Sbjct: 501 FIQEIRDEAHRFAITYNKLLRKKDL 525


>gi|300521566|gb|ADK25994.1| UvrC [Candidatus Nitrososphaera gargensis]
          Length = 542

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 156/566 (27%), Positives = 262/566 (46%), Gaps = 50/566 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT--HRITHMISQINNI 58
           +  ++MP+ PGVY M D  G+++Y+GKA NL+KR+ SY   ++     + + ++++I +I
Sbjct: 8   LKEKRMPDEPGVYLMKDSDGKIIYIGKAKNLRKRVTSYFTKHDPDVGWKTSRLVNKIADI 67

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-- 116
            F VT  E+EA LLE+N+IKR +P FNI L+D + + Y+ IT     P L   R +    
Sbjct: 68  EFIVTDNEIEAFLLESNLIKRYRPVFNIELKDQQRYTYLKIT-DEPFPRLLVARRNRNGE 126

Query: 117 ---IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
               +G  +GPF    +   T+  L++ F +R C     R    PCL + IK C  PC  
Sbjct: 127 FLGPKGKVYGPFVRGSSKFLTVGLLRKLFKIRICN----RLPKTPCLQYFIKNCEAPCIA 182

Query: 174 EISSEKYMEFVHEAKKFLSGGN--HNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231
            ++   YM  V   +  L G +        +   M +A+   DYE A   RD L  L+++
Sbjct: 183 NVTRGHYMMNVMALQDILEGKSSIDKFANNMEDEMKRASDLGDYERAKEIRDTLYRLNNL 242

Query: 232 QNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288
           +             D   +   ++            + RG  +   K + +      LS 
Sbjct: 243 RVKQKMEKAVNRNPDEEYISIMRDNKKGIAHVMALRRTRGVISDRKKFEFDLVGDNSLSS 302

Query: 289 FLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ---GEKRKIIEQA 344
           FL Q+Y+  P  P  + ++E+ ++  +LE S  K  G++V I   +     EKR++++  
Sbjct: 303 FLVQYYSSVPVIPRFLYVNEDLDDRQVLERSLEKIAGHRVSIFNIRHVLAKEKRQLMDLI 362

Query: 345 LINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
             N        +  E  +   + +      L  +P+ I+ +D S++    AVG  V    
Sbjct: 363 SRN------LSMYIERGYDPAVVELKNAIRLLSMPEVIDCFDVSNLGTSIAVGSCVRFAN 416

Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
           N   K+ Y+KF +    V  Q+D AM+  ++ RR+     +E+                P
Sbjct: 417 NKPAKSSYKKFRIRT--VAGQNDFAMIGELVRRRYHSAGDDEK---------------LP 459

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGG GQL AA   L+ L + + +  I +AK  +     E +     E +VL   +
Sbjct: 460 DLIVIDGGHGQLGAAVASLRSLGIHD-VPCIGLAKENE-----EIYMPGLQEPIVLPKSN 513

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRK 550
             L  +Q  RDEAHRF +  +   RK
Sbjct: 514 AGLKMLQHARDEAHRFGLAYNVNLRK 539


>gi|224437841|ref|ZP_03658788.1| excinuclease ABC subunit C [Helicobacter cinaedi CCUG 18818]
 gi|313144289|ref|ZP_07806482.1| UvrABC system protein C [Helicobacter cinaedi CCUG 18818]
 gi|313129320|gb|EFR46937.1| UvrABC system protein C [Helicobacter cinaedi CCUG 18818]
          Length = 627

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 177/622 (28%), Positives = 268/622 (43%), Gaps = 64/622 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQ 54
            + +P  PG+YQ  D    +LYVGKA NL+ RIKSY            N + RI  M+SQ
Sbjct: 22  LQNLPTQPGIYQYFDKDDNLLYVGKAKNLKNRIKSYFSIHNDIITPKANLSQRIALMVSQ 81

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
           +  I   +T ++ +AL+LE ++IK LKP++NILLRDDK++PYI I      P     R +
Sbjct: 82  VAKIHTLLTQSQEDALILENSLIKSLKPKYNILLRDDKTYPYIYIDTSATFPRFEITRKA 141

Query: 115 -STIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
             +    YFGPF S     + ++SL     L            + C+  QI +C  PC  
Sbjct: 142 LQSKHIEYFGPFVSG--ARELLDSLYDALPLVQKK--SCLKGKKACIFHQIHKCPAPCEN 197

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS--HI 231
           +IS  +Y E++ +AK F+      + E +   M   +    +E A   RDR+  L     
Sbjct: 198 KISQSQYAEYITQAKAFIDDRKGLI-EILESKMQILSHNLQFEEAAKIRDRIQKLKTLKT 256

Query: 232 QNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ--ILSYF 289
           Q+  D +    D F L        +   F   G+   +   F+  +  S N         
Sbjct: 257 QSIIDIMSGDYDIFLLDSAGQNHILMMLFIRNGRIVSSDFSFIHQEIHSQNLAQLYTQAL 316

Query: 290 LRQFYTDKPCPENILLSEEAEETSLLEISFFK-----QYGYKVKITVPKQGEKRKIIEQA 344
           L  + T  P P   +L    +     E    +     Q    +KIT P++G K  +++ A
Sbjct: 317 LNHYKTPLPLPPKEILIPHFDFQDKDEKDDLQKILQAQTQSHLKITQPQKGTKYNLLQLA 376

Query: 345 LINAHRSHTQKLSTE---ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401
             NA    T     +    +    L        L  +P RIEI+D SH  G   VG MVV
Sbjct: 377 KKNAQEILTLHTKEQKNAQNENTTLYALKDLCNLSQVPYRIEIFDTSHHSGSHNVGGMVV 436

Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461
                F+++ YR+F LH +     D+ + M  +L RR  +   N                
Sbjct: 437 YENGEFIRSAYRRFELHSS-----DEYSQMSEMLTRRAKKFESN---------------- 475

Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK-----GPKRSAGMEK-FFVKKG 515
             PD+ +LDGGK Q++ A  +LK +     + II+IAK        R+ G        + 
Sbjct: 476 PPPDLWLLDGGKAQINLALDILKSVG--ANVDIIAIAKMKYNAKAYRAKGNALDILRTQN 533

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEI-NG------IGPLRK 568
               L+  D  L F Q+LRDE HR+AIT HR +++K  +    +I  G          + 
Sbjct: 534 AEFKLSTNDKRLQFCQKLRDEVHRYAITYHRNKKQKDIHKI--QIQKGSDMDSSYSKAQI 591

Query: 569 RLLLQSFGTVKMISRSSPETLA 590
           + LL  FG+      +  E + 
Sbjct: 592 KQLLDYFGSFHAFQNAPKEQIE 613


>gi|217076167|ref|YP_002333883.1| excinuclease ABC, C subunit [Thermosipho africanus TCF52B]
 gi|226732394|sp|B7IEM8|UVRC_THEAB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|217036020|gb|ACJ74542.1| excinuclease ABC, C subunit [Thermosipho africanus TCF52B]
          Length = 551

 Score =  345 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 154/604 (25%), Positives = 262/604 (43%), Gaps = 62/604 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            + E PGVY   + +   +Y+GKA NL++R+ S+   +    +   ++ + N++   +  
Sbjct: 9   NVSEKPGVYIFKNGS-EYIYIGKAKNLKRRLNSHF--SLKEEKSRLIVEESNSLEVIIVK 65

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EALLLEA +I + KP++NI+L++ + +PYI I+D    P +   R      G +FGP
Sbjct: 66  NEKEALLLEATLIFKHKPKYNIMLKEGERYPYIRISDDE-YPYVEVTRS-RKSSGIFFGP 123

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F ++      +  LQ+ F +R+C         +PC+ + +K C  PC    +   YM  +
Sbjct: 124 FTNITFTRLLLEILQKIFGVRTCKKD-LSKIKKPCIEYHLKTCLAPC-KFENKNIYMSAI 181

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDC 244
           +  KK LSG    +K+ I + MN  +   D+E+A  +RD L +   + N    I N    
Sbjct: 182 NNLKKVLSGDFEFVKDYIEQKMNYHSKMLDFENAAKYRDLLLSFEKLLNTQGVILNDK-R 240

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
              Y   +           G       +      E        +  + +Y  K      +
Sbjct: 241 CVDYIAYSKKVFLVLKVRGGVLLSKLFYEANLSFEE-------FLYQFYYGMKSDLPTKI 293

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           ++         E S   +  + + I V      R ++E A  N       K     +   
Sbjct: 294 VTF--------ESSNLNKIEFDIPINVSLDDSDRYLLEIAYENLKEHFKAKRLRRDT--- 342

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            LK   +   L  IP RIE  D SH  G   V  +VV         +YR++ L       
Sbjct: 343 -LKKIKEILGLKKIPYRIEGTDISHRNGKFTVASLVVFENGVPKPEEYRRYKLGDIL--- 398

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD   +RM + +R+++                      PD++ +DGG+GQ++AA     
Sbjct: 399 -DDFESIRMFIRKRYTK-------------------HEAPDLIFVDGGRGQVNAAIEAFN 438

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L ++  + ++ IAK        E+  V K +   L   D +L  +  +RDE HR A + 
Sbjct: 439 ELGLD--VDVVGIAKK-------EEIIVTKNKEFKLKENDEVLRTLISIRDETHRVANSF 489

Query: 545 HRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
               + K    S LD+I GIGP RK++LL+ + +++ I  +  E L+ I G   KIA ++
Sbjct: 490 SGSLKLKNYTLSKLDDIPGIGPKRKKILLKKYKSIENIKNAPLEELSKIVG--NKIALRL 547

Query: 604 YNHF 607
             + 
Sbjct: 548 KEYL 551


>gi|134098708|ref|YP_001104369.1| nuclease subunit of the excinuclease ABC complex [Saccharopolyspora
           erythraea NRRL 2338]
 gi|189038083|sp|A4FBL9|UVRC_SACEN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|133911331|emb|CAM01444.1| nuclease subunit of the excinuclease ABC complex [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 717

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 148/497 (29%), Positives = 226/497 (45%), Gaps = 29/497 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P+ PGVY+  D  GRV+YVGKA +L+ R+ SY    +    R   M++    +R+TV 
Sbjct: 13  TIPDAPGVYRFHDAEGRVIYVGKAKSLRSRLSSYFADLSGLHPRTRQMVTTATGVRWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+P + +T     P LY  R        YFG
Sbjct: 73  GTEVEALQLEYSWIKEYDPRFNVRYRDDKSYPVLAVTLHEDFPRLYVTRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G + ++++
Sbjct: 133 PYAHAWAIRETLDMLLRVFPARTCSAGVFKRHSQIGRPCLLGYIGKCSAPCVGRVDADEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V +   F +G    L  K+ R M QA+ + ++E A   RD L AL         +  
Sbjct: 193 RRIVEDFCDFFAGRTDTLIRKLDREMRQASEELEFERAARLRDDLEALRRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +   ++  A +Q      G+ RG   + +    E+  A +   FL QFY ++
Sbjct: 253 DGTDADVIAFADDELAAAVQVFHIRGGRVRGQRGWVIDKVEETGTAALAERFLTQFYGEQ 312

Query: 298 ------------PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
                       P P  +L+ E   E   +        G +V + VP++G+KR ++E   
Sbjct: 313 AALAEQADAGGTPVPREVLVPELPPECEAITEWLSGLRGGRVAVRVPQRGDKRALMETVE 372

Query: 346 INAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401
            NA  + TQ          +    L++      L   P RIE  D SH+ G   V  +VV
Sbjct: 373 RNAKEAFTQYKLRRAGDLTARSAALQELQDALGLDTAPLRIECIDVSHVQGTDVVASLVV 432

Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN----EENLNFHPKKQE 457
             +    K++YR+F +         D   +  V+ RRF++ +K     +E  N       
Sbjct: 433 FEDGVPRKSEYRRFAVREGAEGG--DVGSIAEVVRRRFARYLKETAPPQEGGNGSAGATA 490

Query: 458 YSFPSWPDVVILDGGKG 474
                  D V  +G  G
Sbjct: 491 AVENGSTDTVAANGSVG 507



 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 7/163 (4%)

Query: 443 IKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502
            + E         +   F   P+++++DGG  Q +AA   L +L + + + +I IAK  +
Sbjct: 540 QEAERTGIDPETGRPRKFAYPPNLLVIDGGAPQANAAADALTELGITD-VAVIGIAKRLE 598

Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEIN 561
                E +   + E ++L      LY +QR+RD AH FAI  HR++R K   S  LD I 
Sbjct: 599 -----EVWLPDEAEPVILPRTSEALYLLQRVRDAAHDFAIRYHRQKRSKRMKSSTLDSIP 653

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           G+G  R+  LL+ FG+++ + +++ E ++++ G  ++ A  ++
Sbjct: 654 GLGEARRTALLKHFGSLRRLRQATVEEISAVPGFGQRTAETVH 696


>gi|317483281|ref|ZP_07942275.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915244|gb|EFV36672.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA]
          Length = 768

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 169/740 (22%), Positives = 266/740 (35%), Gaps = 138/740 (18%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 34  KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 93

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93
           TV  TE+E+L LE   IK   PRFN+                             R D  
Sbjct: 94  TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 153

Query: 94  F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138
           +  PY  +   +H +  L +     T   + F           FAS+             
Sbjct: 154 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 213

Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196
                L      V   R  RP +    +         E      +    +  + +   N 
Sbjct: 214 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 273

Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244
            + ++         A +  +A++   Y  A   R             D      D     
Sbjct: 274 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 333

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297
           +S     N            +  G+      TD+ +          RQ  T +       
Sbjct: 334 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 393

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 394 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 453

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 454 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 513

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455
           YR+F +   D K   DD + +   L RRF       ++      +               
Sbjct: 514 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 573

Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470
                                        Q  +  S PD+                V++D
Sbjct: 574 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 633

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+ AA   L+   V N + +  +AK  +     E +       ++L  +   +Y +
Sbjct: 634 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 687

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HR++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E  
Sbjct: 688 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 747

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI    A  +YN  H+
Sbjct: 748 EKVKGIGHAKAEALYNALHE 767


>gi|23465283|ref|NP_695886.1| excinuclease ABC subunit C [Bifidobacterium longum NCC2705]
 gi|23325919|gb|AAN24522.1| excinuclease ABC subunit C [Bifidobacterium longum NCC2705]
          Length = 788

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 169/740 (22%), Positives = 266/740 (35%), Gaps = 138/740 (18%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 54  KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93
           TV  TE+E+L LE   IK   PRFN+                             R D  
Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173

Query: 94  F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138
           +  PY  +   +H +  L +     T   + F           FAS+             
Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233

Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196
                L      V   R  RP +    +         E      +    +  + +   N 
Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293

Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244
            + ++         A +  +A++   Y  A   R             D      D     
Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 353

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297
           +S     N            +  G+      TD+ +          RQ  T +       
Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 413

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 473

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455
           YR+F +   D K   DD + +   L RRF       ++      +               
Sbjct: 534 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 593

Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470
                                        Q  +  S PD+                V++D
Sbjct: 594 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 653

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+ AA   L+   V N + +  +AK  +     E +       ++L  +   +Y +
Sbjct: 654 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HR++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E  
Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 767

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI    A  +YN  H+
Sbjct: 768 EKVKGIGHAKAEALYNALHE 787


>gi|203284366|ref|YP_002222106.1| excinuclease ABC, subunit C [Borrelia duttonii Ly]
 gi|226698344|sp|B5RM14|UVRC_BORDL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|201083809|gb|ACH93400.1| excinuclease ABC, subunit C [Borrelia duttonii Ly]
          Length = 602

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 160/608 (26%), Positives = 275/608 (45%), Gaps = 33/608 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E+ P+  G Y+M     ++LY+GKA NL+ R+K+Y      +H+   +++ + NI   
Sbjct: 11  QIEKFPKTSGCYKMYSKDNKILYIGKAKNLRSRVKNYFSK-RTSHKTKILMNNVTNIEII 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T +E EALLLE N+IK+ KP +NI L+DDK +P I IT   K P ++K R        Y
Sbjct: 70  TTNSEYEALLLECNLIKKYKPTYNIKLKDDKGYPMIRITC-EKYPRIFKTRKIINDGSEY 128

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V  ++  ++ + +TF  + C          PCL F + +C G C  E   ++Y 
Sbjct: 129 FGPYVNVKNLDLVLDLINKTFKTKKCKKKSKN----PCLYFHMGQCLGVCYREDLEDEYR 184

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYE---SAIIHRDRLAALSHIQNHNDSI 238
           + + + K  L+G    L   I   M +  +KE++E        +  L  +S  Q      
Sbjct: 185 KEIEQIKHILNGNISKLLNDIEIKMKEVIMKENFEAAIKLKETKKSLIEISQTQIITKID 244

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D   ++   +L  I    +  G+       F ++  E                +  
Sbjct: 245 KLSEDYLYIHKTNSLNTIVILKYKDGKLTEKDIHFDESIYEEDELIEKFITQYYTSPNMI 304

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I + ++ + +++ ++    +      I    Q   + IIE A  NA  +       
Sbjct: 305 VPDKIHIFKKIDTSNITKLINELKNIKTEIIYKETQDNIK-IIEMATSNAKLALITYNHE 363

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      +++      +  +PK IE +D +HI G   V  +V        K+ YR + ++
Sbjct: 364 KNK---AIENLKTILEMKKLPKTIEGFDIAHINGYKTVASLVTFKMGKPFKDGYRVYKIN 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DDC  ++ V+ RR+S+LI  +  L              PD++++DGGKGQL+A
Sbjct: 421 SLSNGEIDDCKAIKEVISRRYSKLINEQLKL--------------PDLILIDGGKGQLNA 466

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  +LK L +E +I I ++AK  +       F   K + + L  R+  L  +Q +RDEAH
Sbjct: 467 AYSILKGLRIEEKIAICALAKKEEI-----IFLPNKNQGIKLQKRNSALQVLQNVRDEAH 521

Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           R A   + K       +   +I GIG  + + +L+  GT K I   + + +A+   I+  
Sbjct: 522 RRANNFNNKLHNNIKLNY-TKIKGIGEQKAKKILKVLGTYKDILLLNEDEIATKMKINIT 580

Query: 599 IACKIYNH 606
           +A KI   
Sbjct: 581 MANKIKKF 588


>gi|203287900|ref|YP_002222915.1| excinuclease ABC, subunit C [Borrelia recurrentis A1]
 gi|226698345|sp|B5RRR0|UVRC_BORRA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|201085120|gb|ACH94694.1| excinuclease ABC, subunit C [Borrelia recurrentis A1]
          Length = 602

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 160/608 (26%), Positives = 276/608 (45%), Gaps = 33/608 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E+ P+  G Y+M     ++LY+GKA NL+ R+K+Y      +H+   +++ + NI   
Sbjct: 11  QIEKFPKTSGCYKMYSKDNKILYIGKAKNLRSRVKNYFSK-RTSHKTKILMNNVTNIEII 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T +E EALLLE N+IK+ KP +NI L+DDK +P I IT   K P ++K R        Y
Sbjct: 70  TTNSEYEALLLECNLIKKYKPTYNIKLKDDKGYPMIRITC-EKYPRIFKTRKIINDGSEY 128

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V  ++  ++ + +TF  + C          PCL F + +C G C  E   ++Y 
Sbjct: 129 FGPYVNVKNLDLVLDLINKTFKTKKCKKKSKN----PCLYFHMGQCLGVCYREDLEDEYR 184

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYE---SAIIHRDRLAALSHIQNHNDSI 238
           + + + K  L+G    L   I   M +  +KE++E        +  L  +S  Q      
Sbjct: 185 KEIEQIKHILNGNISKLLNDIEIKMKEVIMKENFEAAIKLKETKKSLIEISQTQIITKID 244

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D   ++   +L  I    +  G+       F ++  E                +  
Sbjct: 245 KLSEDYLYIHKTNSLNTIVILKYKDGKLTEKDIHFDESIYEEDELIEKFITQYYTSPNMI 304

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ I + ++ + +++      +    K +I   +  +  KIIE A  NA  +       
Sbjct: 305 VPDKIHIFKKIDTSNIT-KLINELKNIKTEIIYKETKDNIKIIEMATSNAKLALITYNHE 363

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      +++      +  +PK IE +D +HI G   V  +V        K+ YR + ++
Sbjct: 364 KNK---AIENLKTILEMKKLPKTIEGFDIAHINGYKTVASLVTFKMGKPFKDGYRVYKIN 420

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                  DDC  ++ V+ RR+S+LI  +  L              PD++++DGGKGQL++
Sbjct: 421 SLSNGEIDDCKAIKEVISRRYSKLINEQLKL--------------PDLILIDGGKGQLNS 466

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A  +LK L +E +I I ++AK  +       F   K + + L  R+  L  +Q +RDEAH
Sbjct: 467 AYSILKGLRIEEKIAICALAKKEEI-----IFLPNKNQGIKLQKRNSALQVLQNVRDEAH 521

Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           R A   + K       +   +I GIG  + + +L+  GT K I   + + +A+   I+  
Sbjct: 522 RRANNFNNKLHNNIKLNY-TKIKGIGEQKAKKILKVLGTYKDILLLNEDEIATKMKINIT 580

Query: 599 IACKIYNH 606
           +A KI   
Sbjct: 581 MANKIKKF 588


>gi|213691965|ref|YP_002322551.1| excinuclease ABC, C subunit [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523426|gb|ACJ52173.1| excinuclease ABC, C subunit [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458074|dbj|BAJ68695.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 788

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 167/740 (22%), Positives = 262/740 (35%), Gaps = 138/740 (18%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 54  KTSDIPTKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93
           TV  TE+E+L LE   IK   PRFN+                             R D  
Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173

Query: 94  F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138
           +  PY  +   +H +  L +     T   S F           FAS+             
Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTSVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233

Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196
                L      V   R  RP +    +         E      +    +  + +   N 
Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293

Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244
            + ++         A +  +A++   Y  A   R             D      D     
Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLAQV 353

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297
           +S     N            +  G+       D+ +          RQ  T +       
Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITAADAVARAQATRERNTRQETTGRADLLAPI 413

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E      LE       G  V I V  +G+K++++ +A  NA ++  +  
Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMGRANENASQALQRSK 473

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVSSMVVFEDAIAKKSE 533

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQ----------------------------- 441
           YR+F +   D K    D + +   L RRF                               
Sbjct: 534 YRRFAIRGKDGKGAVGDLSALYETLTRRFKHGNIAGDSGESIDAEQRAASAAGKMTTAVA 593

Query: 442 ---LIKNEENLNFHPKKQEYSFPSWPD----------------------------VVILD 470
              +  N  +   +         + PD                            +V++D
Sbjct: 594 AETIAANGNDNGENGSDISGKGHAVPDGVQNDTRETSPDIVQQNTNRHHFAYKPNLVVVD 653

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+ AA   L+   V N + +  +AK  +     E +       ++L  +   +Y +
Sbjct: 654 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HR++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E  
Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGKSYQKRLLNHFGSVKAMREASVEDF 767

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI    A  +YN  H+
Sbjct: 768 EKVKGIGHAKAEALYNALHE 787


>gi|119367628|sp|Q8G6E0|UVRC_BIFLO RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 746

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 169/740 (22%), Positives = 266/740 (35%), Gaps = 138/740 (18%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 12  KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 71

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93
           TV  TE+E+L LE   IK   PRFN+                             R D  
Sbjct: 72  TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 131

Query: 94  F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138
           +  PY  +   +H +  L +     T   + F           FAS+             
Sbjct: 132 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 191

Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196
                L      V   R  RP +    +         E      +    +  + +   N 
Sbjct: 192 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 251

Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244
            + ++         A +  +A++   Y  A   R             D      D     
Sbjct: 252 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 311

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297
           +S     N            +  G+      TD+ +          RQ  T +       
Sbjct: 312 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 371

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 372 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 431

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 432 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 491

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455
           YR+F +   D K   DD + +   L RRF       ++      +               
Sbjct: 492 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 551

Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470
                                        Q  +  S PD+                V++D
Sbjct: 552 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 611

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+ AA   L+   V N + +  +AK  +     E +       ++L  +   +Y +
Sbjct: 612 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 665

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HR++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E  
Sbjct: 666 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 725

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI    A  +YN  H+
Sbjct: 726 EKVKGIGHAKAEALYNALHE 745


>gi|296454218|ref|YP_003661361.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183649|gb|ADH00531.1| excinuclease ABC, C subunit [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 788

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 168/740 (22%), Positives = 267/740 (36%), Gaps = 138/740 (18%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 54  KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93
           TV  TE+E+L LE   IK   PRFN+                             R D  
Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173

Query: 94  F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138
           +  PY  +   +H +  L +     T   + F           FAS+             
Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233

Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196
                L      V   R  RP +    +         E      +    +  + +   N 
Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293

Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244
            + ++         A +  +A++   Y  A   R             D      D     
Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 353

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297
           +S     N            +  G+      TD+ +          RQ  T +       
Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 413

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 473

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455
           YR+F +   D K   DD + +   L RRF       ++      +               
Sbjct: 534 YRRFAVRGKDGKGAVDDLSALYETLTRRFRHGNIAGDSGESIDAEQRAASAAGKMTTVVA 593

Query: 456 -----------------------------QEYSFPSWPDVV----------------ILD 470
                                        Q  ++ S PD+V                ++D
Sbjct: 594 AETIVANGNDNGEGGSDISGKGHAVPVGVQNDAWESSPDIVQQNTNRHHFAYTPNLVVVD 653

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+ AA   L+   V + + +  +AK  +     E +       ++L  +   +Y +
Sbjct: 654 GGKPQVMAAAKALEDCGVID-VAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HR++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E  
Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 767

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI    A  +YN  H+
Sbjct: 768 EKVKGIGHAKAEALYNALHE 787


>gi|322689285|ref|YP_004209019.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis
           157F]
 gi|320460621|dbj|BAJ71241.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis
           157F]
          Length = 788

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 54  KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93
           TV  TE+E+L LE   IK   PRFN+                             R D  
Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173

Query: 94  F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138
           +  PY  +   +H +  L +     T   + F           FAS+             
Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233

Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196
                L      V   R  RP +    +         E      +    +  + +   N 
Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293

Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244
            + ++         A +  +A++   Y  A   R             D      D     
Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 353

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297
           +S     N            +  G+      TD+ +          RQ  T +       
Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 413

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 473

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455
           YR+F +   D K   DD + +   L RRF       ++      +               
Sbjct: 534 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 593

Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470
                                        Q  +  S PD+                V++D
Sbjct: 594 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 653

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+ AA   L+   V N + +  +AK  +     E +       ++L  +   +Y +
Sbjct: 654 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HR++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E  
Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 767

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI    A  +Y   H+
Sbjct: 768 EKVKGIGHAKAEALYTALHE 787


>gi|322691297|ref|YP_004220867.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320456153|dbj|BAJ66775.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 788

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 54  KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93
           TV  TE+E+L LE   IK   PRFN+                             R D  
Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173

Query: 94  F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138
           +  PY  +   +H +  L +     T   + F           FAS+             
Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233

Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196
                L      V   R  RP +    +         E      +    +  + +   N 
Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293

Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244
            + ++         A +  +A++   Y  A   R             D      D     
Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 353

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297
           +S     N            +  G+      TD+ +          RQ  T +       
Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 413

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 473

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455
           YR+F +   D K   DD + +   L RRF       ++      +               
Sbjct: 534 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 593

Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470
                                        Q  +  S PD+                V++D
Sbjct: 594 AETIAANGNDNGEGGSGISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 653

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+ AA   L+   V N + +  +AK  +     E +       ++L  +   +Y +
Sbjct: 654 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HR++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E  
Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 767

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI    A  +Y   H+
Sbjct: 768 EKVKGIGHAKAEALYTALHE 787


>gi|239621396|ref|ZP_04664427.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|239515857|gb|EEQ55724.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 768

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 34  KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 93

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93
           TV  TE+E+L LE   IK   PRFN+                             R D  
Sbjct: 94  TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 153

Query: 94  F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138
           +  PY  +   +H +  L +     T   + F           FAS+             
Sbjct: 154 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 213

Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196
                L      V   R  RP +    +         E      +    +  + +   N 
Sbjct: 214 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 273

Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244
            + ++         A +  +A++   Y  A   R             D      D     
Sbjct: 274 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 333

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297
           +S     N            +  G+      TD+ +          RQ  T +       
Sbjct: 334 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 393

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 394 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 453

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 454 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 513

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455
           YR+F +   D K   DD + +   L RRF       ++      +               
Sbjct: 514 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 573

Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470
                                        Q  +  S PD+                V++D
Sbjct: 574 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 633

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+ AA   L+   V N + +  +AK  +     E +       ++L  +   +Y +
Sbjct: 634 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 687

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HR++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E  
Sbjct: 688 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 747

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI    A  +Y   H+
Sbjct: 748 EKVKGIGHAKAEALYTALHE 767


>gi|227547282|ref|ZP_03977331.1| Nuclease subunit of the excinuclease complex [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227212241|gb|EEI80137.1| Nuclease subunit of the excinuclease complex [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 788

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 54  KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 113

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93
           TV  TE+E+L LE   IK   PRFN+                             R D  
Sbjct: 114 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 173

Query: 94  F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138
           +  PY  +   +H +  L +     T   + F           FAS+             
Sbjct: 174 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 233

Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196
                L      V   R  RP +    +         E      +    +  + +   N 
Sbjct: 234 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 293

Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244
            + ++         A +  +A++   Y  A   R             D      D     
Sbjct: 294 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 353

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297
           +S     N            +  G+      TD+ +          RQ  T +       
Sbjct: 354 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 413

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 414 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 473

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 474 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455
           YR+F +   D K   DD + +   L RRF       ++      +               
Sbjct: 534 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 593

Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470
                                        Q  +  S PD+                V++D
Sbjct: 594 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 653

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+ AA   L+   V N + +  +AK  +     E +       ++L  +   +Y +
Sbjct: 654 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 707

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HR++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E  
Sbjct: 708 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 767

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI    A  +Y   H+
Sbjct: 768 EKVKGIGHAKAEALYTALHE 787


>gi|23335147|ref|ZP_00120385.1| COG0322: Nuclease subunit of the excinuclease complex
           [Bifidobacterium longum DJO10A]
          Length = 839

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 105 KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 164

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93
           TV  TE+E+L LE   IK   PRFN+                             R D  
Sbjct: 165 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 224

Query: 94  F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138
           +  PY  +   +H +  L +     T   + F           FAS+             
Sbjct: 225 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 284

Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196
                L      V   R  RP +    +         E      +    +  + +   N 
Sbjct: 285 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 344

Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244
            + ++         A +  +A++   Y  A   R             D      D     
Sbjct: 345 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 404

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297
           +S     N            +  G+      TD+ +          RQ  T +       
Sbjct: 405 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 464

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 465 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 524

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 525 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 584

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455
           YR+F +   D K   DD + +   L RRF       ++      +               
Sbjct: 585 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 644

Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470
                                        Q  +  S PD+                V++D
Sbjct: 645 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 704

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+ AA   L+   V N + +  +AK  +     E +       ++L  +   +Y +
Sbjct: 705 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 758

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HR++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E  
Sbjct: 759 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 818

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI    A  +Y   H+
Sbjct: 819 EKVKGIGHAKAEALYTALHE 838


>gi|254672092|emb|CBA04769.1| putative excinuclease ABC subunit C [Neisseria meningitidis
           alpha275]
          Length = 489

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 150/463 (32%), Positives = 243/463 (52%), Gaps = 14/463 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY+  D  G+VLYVGKA NL++R+  Y   N+H+ RI  M+ Q+++I  T+
Sbjct: 28  LKNLPKLPGVYRFFDEGGKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTI 87

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N+IK L P++NIL RDDKS+PY++++  H+ P +  +R +      YF
Sbjct: 88  TRSEAEALILENNLIKALSPKYNILFRDDKSYPYLMLS-GHQYPQMAYYRGTLKKPNQYF 146

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GP+ + +AV  +I  LQ+ F LR+C DSVF HR RPCLL+QIKRC+ PC G IS E Y +
Sbjct: 147 GPYPNSNAVRDSIQVLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRD 206

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR------LAALSHIQNHND 236
            V +A  FL+G    L   +   M  A     +E A  +RD+      + +   I + N 
Sbjct: 207 SVRQAATFLNGKTDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNP 266

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFY 294
           +  N +D  +L  +  + C+       G++ G  +FF  T ++           F+ Q Y
Sbjct: 267 NNPNDIDLLALAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHY 326

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
             K  P+  ++         L+ +   ++G +++      GE++  ++ A  NA  +  Q
Sbjct: 327 LGKSKPD--IIINNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQ 384

Query: 355 KLSTEISHQMILKDFTKKFALPHIP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
           +   + + Q  + +  K   +      R+E +D SH  G + +   VV  E     +QYR
Sbjct: 385 RRLQQSNQQHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYR 444

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456
           ++N+     K  DD A MR VL RR+ ++ + E N       +
Sbjct: 445 RYNITTA--KPGDDYAAMREVLTRRYGKMQEAEANGETRQMAR 485


>gi|189439291|ref|YP_001954372.1| excinuclease ABC subunit C [Bifidobacterium longum DJO10A]
 gi|312132666|ref|YP_004000005.1| uvrc [Bifidobacterium longum subsp. longum BBMN68]
 gi|229558015|sp|B3DRV5|UVRC_BIFLD RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189427726|gb|ACD97874.1| Excinuclease Nuclease subunit [Bifidobacterium longum DJO10A]
 gi|311773620|gb|ADQ03108.1| UvrC [Bifidobacterium longum subsp. longum BBMN68]
          Length = 746

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 168/740 (22%), Positives = 265/740 (35%), Gaps = 138/740 (18%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 12  KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 71

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILL---------------------------RDDKS 93
           TV  TE+E+L LE   IK   PRFN+                             R D  
Sbjct: 72  TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTR 131

Query: 94  F--PYILI-TDKHKIPALYKHRDSSTIQGSYF---------GPFASVDAVEK---TINSL 138
           +  PY  +   +H +  L +     T   + F           FAS+             
Sbjct: 132 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEA 191

Query: 139 QRTFFLRSCADSVFRHR-TRPCLLFQIKRCS-GPCTGEISSEKYMEFVHEAKKFLSGGNH 196
                L      V   R  RP +    +         E      +    +  + +   N 
Sbjct: 192 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 251

Query: 197 NLKEK--------IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD----C 244
            + ++         A +  +A++   Y  A   R             D      D     
Sbjct: 252 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQV 311

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK------- 297
           +S     N            +  G+      TD+ +          RQ  T +       
Sbjct: 312 YSDAAGDNHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPI 371

Query: 298 -PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 372 APVPREIIVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSK 431

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 432 MSRISDMGARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 491

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKK--------------- 455
           YR+F +   D K   DD + +   L RRF       ++      +               
Sbjct: 492 YRRFAIRGKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVA 551

Query: 456 -----------------------------QEYSFPSWPDV----------------VILD 470
                                        Q  +  S PD+                V++D
Sbjct: 552 AETIAANGNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVD 611

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GGK Q+ AA   L+   V N + +  +AK  +     E +       ++L  +   +Y +
Sbjct: 612 GGKPQVMAAAKALEDCGV-NDVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLL 665

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HR++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E  
Sbjct: 666 QRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDF 725

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI    A  +Y   H+
Sbjct: 726 EKVKGIGHAKAEALYTALHE 745


>gi|326440284|ref|ZP_08215018.1| excinuclease ABC subunit C [Streptomyces clavuligerus ATCC 27064]
          Length = 732

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 134/482 (27%), Positives = 232/482 (48%), Gaps = 16/482 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+ PGVY+  D   RV+YVGKA +L++R+ +Y         R   M++   ++ +TV 
Sbjct: 13  EIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAGMHPRTATMVTSAASVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      YFG
Sbjct: 73  ATEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T++ + R F +R+C+  VF++   + RPCLL  I +CS PC G ++ E++
Sbjct: 133 PYGHAWAIRETVDLMLRVFPVRTCSAGVFKNHRAKGRPCLLGYIGKCSAPCVGRVTPEEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E   E   F++G       ++ + M +A  + +YE A   RD + AL      +  +  
Sbjct: 193 RELAEEFCDFMAGRTGAYIRRLEQRMAEAAEELEYERAARLRDDITALRRALEKSAVVLA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++  ++  A +Q      G+ RG   +          + ++ + L+Q Y ++
Sbjct: 253 DATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDLSGLVEHALQQLYGEE 312

Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ +L+    E++  +      + G +V + VP++G+K+ ++E    NA ++   
Sbjct: 313 SGDAVPKEVLVPALPEDSGAVGEWLSGRRGAQVSLRVPRRGDKKALMETVQRNAQQALAL 372

Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             +   S        L++  +   L   P RIE +D SH+ G   V  MVV  +    K+
Sbjct: 373 HKTKRASDLTTRSRALEEIAEALGLDSAPLRIECFDISHLQGEDVVASMVVFEDGLPRKS 432

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YR+F +       QDD   M  V+ RRF + +  ++             P  PD     
Sbjct: 433 EYRRFQIKG--FPGQDDVRSMHEVVGRRFRRYLAEKDRTGEWIGADSPDTPGGPDSAGCP 490

Query: 471 GG 472
           GG
Sbjct: 491 GG 492



 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 87/164 (53%), Gaps = 7/164 (4%)

Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
            L             +   F   P +V++DGG  Q++AA+  L +L +++ + +  +AK 
Sbjct: 545 DLEAGLPGPGAADDGRPRRFAYPPQLVVVDGGAPQVAAARRALDELGIDD-VAVCGLAKR 603

Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDE 559
            +     E +   + + +VL      LY +QR+RD AH FAI   R +R  +   SPLD+
Sbjct: 604 LE-----EVWLPGESDPVVLPRASEGLYLLQRVRDTAHDFAIRYQRSKRTHRIRTSPLDD 658

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + G+G +RK+ L++ FG+VK + +++ E +  + G+ +K A  +
Sbjct: 659 VPGLGTVRKQALIKHFGSVKRLRQATIEQICEVPGMGRKTAESV 702


>gi|294811989|ref|ZP_06770632.1| UvrABC system protein C [Streptomyces clavuligerus ATCC 27064]
 gi|294324588|gb|EFG06231.1| UvrABC system protein C [Streptomyces clavuligerus ATCC 27064]
          Length = 742

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 134/482 (27%), Positives = 232/482 (48%), Gaps = 16/482 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P+ PGVY+  D   RV+YVGKA +L++R+ +Y         R   M++   ++ +TV 
Sbjct: 23  EIPDSPGVYRFRDEHRRVIYVGKAKSLRQRLANYFQDLAGMHPRTATMVTSAASVEWTVV 82

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE + IK   PRFN+  RDDKS+PY+ +T   + P +   R +      YFG
Sbjct: 83  ATEVEALQLEYSWIKEYDPRFNVKYRDDKSYPYLAVTLNEEFPRVQVMRGAKRKGVRYFG 142

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           P+    A+ +T++ + R F +R+C+  VF++   + RPCLL  I +CS PC G ++ E++
Sbjct: 143 PYGHAWAIRETVDLMLRVFPVRTCSAGVFKNHRAKGRPCLLGYIGKCSAPCVGRVTPEEH 202

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E   E   F++G       ++ + M +A  + +YE A   RD + AL      +  +  
Sbjct: 203 RELAEEFCDFMAGRTGAYIRRLEQRMAEAAEELEYERAARLRDDITALRRALEKSAVVLA 262

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  ++  ++  A +Q      G+ RG   +          + ++ + L+Q Y ++
Sbjct: 263 DATDADLIAVAEDELEAAVQIFHVRGGRVRGQRGWVTDKVEAVDLSGLVEHALQQLYGEE 322

Query: 298 P---CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
                P+ +L+    E++  +      + G +V + VP++G+K+ ++E    NA ++   
Sbjct: 323 SGDAVPKEVLVPALPEDSGAVGEWLSGRRGAQVSLRVPRRGDKKALMETVQRNAQQALAL 382

Query: 355 KLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
             +   S        L++  +   L   P RIE +D SH+ G   V  MVV  +    K+
Sbjct: 383 HKTKRASDLTTRSRALEEIAEALGLDSAPLRIECFDISHLQGEDVVASMVVFEDGLPRKS 442

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YR+F +       QDD   M  V+ RRF + +  ++             P  PD     
Sbjct: 443 EYRRFQIKG--FPGQDDVRSMHEVVGRRFRRYLAEKDRTGEWIGADSPDTPGGPDSAGCP 500

Query: 471 GG 472
           GG
Sbjct: 501 GG 502



 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 87/164 (53%), Gaps = 7/164 (4%)

Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
            L             +   F   P +V++DGG  Q++AA+  L +L +++ + +  +AK 
Sbjct: 555 DLEAGLPGPGAADDGRPRRFAYPPQLVVVDGGAPQVAAARRALDELGIDD-VAVCGLAKR 613

Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDE 559
            +     E +   + + +VL      LY +QR+RD AH FAI   R +R  +   SPLD+
Sbjct: 614 LE-----EVWLPGESDPVVLPRASEGLYLLQRVRDTAHDFAIRYQRSKRTHRIRTSPLDD 668

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + G+G +RK+ L++ FG+VK + +++ E +  + G+ +K A  +
Sbjct: 669 VPGLGTVRKQALIKHFGSVKRLRQATIEQICEVPGMGRKTAESV 712


>gi|309799922|ref|ZP_07694126.1| excinuclease ABC, C subunit [Streptococcus infantis SK1302]
 gi|308116449|gb|EFO53921.1| excinuclease ABC, C subunit [Streptococcus infantis SK1302]
          Length = 497

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 140/513 (27%), Positives = 233/513 (45%), Gaps = 39/513 (7%)

Query: 52  ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111
           +S+I +  F VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   
Sbjct: 1   MSEIVDFEFIVTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIIT 59

Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
           R      G YFGP+  V A  +    L R F  R C +      ++ C  + I +C    
Sbjct: 60  RQVKKDGGLYFGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCVAHT 115

Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231
             +     +     E   FL G +  + + +   MN A    ++E A  +RD + A+  +
Sbjct: 116 ICKKDEAYFKAMAQEVSDFLKGQDDKIIDDLKEKMNVAAQSMEFERAAEYRDLIQAIGTL 175

Query: 232 QNHNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288
           +     +       D F  Y +K   C+Q  F   G+            ++     +   
Sbjct: 176 RTKQRVMAKDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYV 235

Query: 289 FLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
                      P  IL+ ++ +E ++  +   K          P++GEK++++  A+ NA
Sbjct: 236 GQFYQEKSHLVPNEILIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLAIKNA 288

Query: 349 H----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGE 404
                +       +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV   
Sbjct: 289 RVSLEQKFDLLEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVN 347

Query: 405 NGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWP 464
               K  YRK+ +    V   DD A MR V+ RR+ ++ ++                + P
Sbjct: 348 GKPSKKDYRKYKIKT--VVGPDDYASMREVIRRRYGRVQRDG--------------LTPP 391

Query: 465 DVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRD 524
           D++++DGG+GQ++ A+ V+++  +   I I  + K  K     E  F    E + L+   
Sbjct: 392 DLIVIDGGQGQVNIAKQVIQE-ELGLDIPIAGLQKNDKHQT-HELLFGDPLEVVELSRNS 449

Query: 525 PILYFIQRLRDEAHRFAITTHRKRRKKAAYSPL 557
              + +QR++DE HRFAIT HR+ R K   SPL
Sbjct: 450 QEFFLLQRIQDEVHRFAITFHRQLRSK-IPSPL 481


>gi|222099395|ref|YP_002533963.1| UvrABC system protein C [Thermotoga neapolitana DSM 4359]
 gi|221571785|gb|ACM22597.1| UvrABC system protein C [Thermotoga neapolitana DSM 4359]
          Length = 503

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 150/557 (26%), Positives = 265/557 (47%), Gaps = 55/557 (9%)

Query: 52  ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111
           + + +++   V  TE EALLLEAN+I++ +P++N+ L+D + +PYI I++   IP +   
Sbjct: 1   MEEADDLETIVVTTEKEALLLEANLIRKYRPKYNVRLKDTEFYPYIRISN-DDIPYVEIV 59

Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
           +       +YFGP+ +V  V   + +LQR    R+C   + R + RPC LF +KRC GPC
Sbjct: 60  KRRLKDG-TYFGPYTTVRFVRDLLETLQRILGFRTCKFDLNRVK-RPCFLFHLKRCVGPC 117

Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231
               + +++ E + + + FLSG   ++ + + R M   +   D+E+A  +RD L  LS +
Sbjct: 118 --AGNVDQHEEAIEKLRDFLSGNMRDVFDYLRRKMELHSRMLDFENAAKYRDLLLNLSSV 175

Query: 232 QNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291
                  +       +  +             G   G  +F ++  +     +      R
Sbjct: 176 LESQGVAFEEKINCDVVVHAQGL-FVVLRVRDGYLIGKISFEMEGGNLDDFIREYYVSGR 234

Query: 292 QFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
                   P ++++  + EE             Y           + ++ +  L  A ++
Sbjct: 235 G-----DVPNSLVVESDLEEMD-----------YTSLGFQYVGKPRSQLEKDLLEKARKN 278

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
              +LS     +  LK+  K   L     RIE  D SH+ G   V  +VV  +    K++
Sbjct: 279 LETELSMRGLKKEALKELMKLLNLKEFVYRIEGIDVSHLQGKHTVASLVVFEDGLPKKSE 338

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++ L   +++  DD   +R V+ RR+S+                      P+++ +DG
Sbjct: 339 YRRYRL---NLERPDDYEAIREVVRRRYSK-------------------HPLPNLLFVDG 376

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G+GQ++AA   LK L       ++ +AK        E+  V + + +VL    P+L  + 
Sbjct: 377 GRGQVNAALEALKDLG--KACPVVGLAKK-------EEIIVTEDKDIVLPQDHPVLRLLI 427

Query: 532 RLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           ++RDE HRFA+  HR+RR+K +  S LDEI G+GP+RK+ LL+ FG+++ I  +S E +A
Sbjct: 428 QVRDETHRFAVNYHRRRREKESLRSVLDEIPGVGPIRKKKLLEHFGSIESIRSASVEEIA 487

Query: 591 SIEGISKKIACKIYNHF 607
            + G S ++A +I    
Sbjct: 488 RVIG-SAEVARRILERL 503


>gi|15607074|ref|NP_214456.1| repair excision nuclease subunit C [Aquifex aeolicus VF5]
 gi|8134794|sp|O67887|UVRC_AQUAE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|2984329|gb|AAC07850.1| repair excision nuclease subunit C [Aquifex aeolicus VF5]
          Length = 566

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 143/605 (23%), Positives = 257/605 (42%), Gaps = 52/605 (8%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +  PE PGVY       R +Y+GKA NL+KR+  ++ ++ +  +   +IS  +N+ + VT
Sbjct: 12  QNAPEKPGVYLFK-KGNRPIYIGKAKNLKKRLLQHLKASEYDSKERAIISNSDNLEWIVT 70

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             E EAL+LE ++I++ KPR+N+L +    +P +L+T     P +   R +   +G  FG
Sbjct: 71  RNEYEALVLEIDLIQQYKPRYNVLHKFGGGYPMLLLTKDE-YPTIKVVRGTEH-EGELFG 128

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PF       K    +   F LR+C       R+ PC+ + +  CS PC G +S E+Y   
Sbjct: 129 PFLQSKKAYKVKKLIHNLFKLRTC--DPLPKRSEPCMDYHLGLCSAPCCGFVSKEEYELA 186

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           V  A+  L+G    +  K+   + + + +  +E     RD++ AL ++            
Sbjct: 187 VSSARALLTGEVAEVLPKLYEKIEEFSKELMFEKCAHIRDQIIALENLAKGQAVSALPF- 245

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
                  +     +           +     K   +  + + +   +  +Y     P  +
Sbjct: 246 ------REGDIFYKFGSRLGLLLVRSSKLVSKEIFDLESDEEVEEVILGYYYSNYVPRKV 299

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           + +       L E                     +++ E    N        L   I+ +
Sbjct: 300 ITNF-----ELSEEVKEWIRNRAKGEVEFSGEIPKELKEVLEEN--------LGEGINEE 346

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
           ++ K+F +K  +P     IE +D SH  G   VG  VV       K  YR++ +    + 
Sbjct: 347 VLKKEFAEKLGMPVPR-VIEGFDISHFYGEDIVGSCVVWKGGKMSKKDYRRYKVKT--IS 403

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD   +  VL RR  +++K E                 PD+ ++DGGKGQL+    V 
Sbjct: 404 RIDDYLALEEVLTRRAKRILKGE--------------VEKPDIWLIDGGKGQLNVGIRVK 449

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           K+  ++  + + S+AK        E  + + G  + L     +      +RDEAHRFA++
Sbjct: 450 KRTGLD--VKVFSLAKEE------EIIYTEDGREIRLKENPILYRVFGEIRDEAHRFALS 501

Query: 544 THRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            +RK R K+     L +I GIG  +K+++ ++F T+     +  E L  + GI+  +  +
Sbjct: 502 YNRKLREKRYMEDILSKIKGIGEQKKKIIYKNFETLYDFIEAKDEELRRL-GINPSLKQE 560

Query: 603 IYNHF 607
           +    
Sbjct: 561 VKKWL 565


>gi|150021606|ref|YP_001306960.1| excinuclease ABC subunit C [Thermosipho melanesiensis BI429]
 gi|149794127|gb|ABR31575.1| excinuclease ABC, C subunit [Thermosipho melanesiensis BI429]
          Length = 550

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 154/607 (25%), Positives = 256/607 (42%), Gaps = 65/607 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +PE PGVY         +Y+GK+ NL+KR+ S+   +    +   ++ + N +   +
Sbjct: 7   LKNIPEKPGVYIFK-RDKEYVYIGKSKNLKKRLNSHF--SFKEEKSRLIVEESNKLETII 63

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
              E E+LLLEA +I + KP++N++L++ + +PYI I+     P +   R+       YF
Sbjct: 64  VKNEKESLLLEATLIYKYKPKYNVMLKESEPYPYIRIS-SDVFPYVEVTRNRDKDG-KYF 121

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181
           GP+ +V      +  LQ+    R+C  ++     +PCL + +K C  PC     + + Y 
Sbjct: 122 GPYTNVKFTRLFLEVLQKILNFRTCKKNI-EKIKKPCLNYYLKTCVAPCVDENKNFKMYG 180

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E +   ++ LSG    ++  I   M       D+E+A  +RD L A ++I  +   +   
Sbjct: 181 EIIKRLEEVLSGDYEYIRNFIEAKMYHHAKMLDFENAAKYRDVLLAFNNIMINQGIVLRD 240

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
                    K+           G       +      E    Q                +
Sbjct: 241 KRNVDYIVFKDN-MFLVLKVRSGVLTSKLLYEASLTFEEFIYQFYYGMKSDLPNKIVVSK 299

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            I L+ +                    I V ++ + + ++E AL N          ++  
Sbjct: 300 QINLNFDVP------------------IIVCREEDDKYLLEIALENLTEHIKSINFSKD- 340

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              IL    +   L  IP RIE  D SH  G   V  ++V       K++YR++ L    
Sbjct: 341 ---ILIKMKEILNLKKIPFRIEGTDISHRNGRFTVASLIVFENGYPKKDEYRRYKLGDIL 397

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD   +R+ + +R+++                      PD+  +DGGKGQ++AA G
Sbjct: 398 ----DDFESIRIFIRKRYTK-------------------HRPPDLFFVDGGKGQVNAAIG 434

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
              K+N++  I ++ IAK        E+  V K ++  L+  D +L  +  +RDE HR A
Sbjct: 435 EFNKMNID--IDVVGIAK-------EEEVIVTKNKSFKLDPTDVVLRTLIFVRDETHRVA 485

Query: 542 ITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            +   K +      S LD I GIGP RK+ LL  FGT+K I  +S E L  I G  K IA
Sbjct: 486 NSFSGKLKNNEYKVSKLDSIKGIGPKRKKQLLMKFGTLKNIKSASLEELEEIVG--KTIA 543

Query: 601 CKIYNHF 607
            +I    
Sbjct: 544 LRIKEEL 550


>gi|149002298|ref|ZP_01827240.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS69]
 gi|147759613|gb|EDK66604.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS69]
          Length = 553

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 127/478 (26%), Positives = 216/478 (45%), Gaps = 37/478 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEIYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  +L+ ++ +E ++  +   K          P++GEK++++  A+ NA     +    
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSKILK-------PQRGEKKQLVNLAIKNARVSLEQKFNL 354

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
              +    Q  +++  +   +P    RIE +DNS+IMG S V  MVV       K  YRK
Sbjct: 355 LEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRK 413

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           + +    V   DD A MR V+ RR+ ++ +                 + PD++++DGG
Sbjct: 414 YKIKT--VVGPDDYASMREVIRRRYGRVQREA--------------LTPPDLIVIDGG 455


>gi|83319764|ref|YP_424239.1| excinuclease ABC, C subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|119367673|sp|Q2SSM4|UVRC_MYCCT RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|83283650|gb|ABC01582.1| excinuclease ABC, C subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 584

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 147/611 (24%), Positives = 266/611 (43%), Gaps = 35/611 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +   PG Y  L+    V+YVGKA NL+KR+ +Y +   +  + T +I +I ++++ 
Sbjct: 6   QVDLLTNKPGCYLFLNKDNEVIYVGKAKNLKKRVSTYFNKA-YNIKTTRLIREITHLKYF 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E E+LLLE N+IK+ +P++N+LL DDK++PYI+IT++   P     R         
Sbjct: 65  IVDNEKESLLLEKNLIKKYRPKYNVLLNDDKTYPYIIITNQKD-PMYKYVRKYEKKALRN 123

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP          + +LQR F LR C   +     +PCL + + +CSG C   + S  Y 
Sbjct: 124 YGPLPIGSNARSILLTLQRLFPLRMCKGDL----KKPCLYYHLNQCSGACFKTVDSSYYE 179

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             + +  KF  G  + +K+ + + M +A+    +E A   +D++ +L  I    +     
Sbjct: 180 YQIKQVDKFFKGEINQVKQTLVKQMQKASDNLQFEQAKRIKDQITSLDFITAKQNVDIVT 239

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +D  +   N+   C    F+  GQ       +++        ++L+ +L+Q Y    
Sbjct: 240 NKNIDVVNYEINEEKICFVMLFYRLGQLTYKD-EYIQNYEGQDLDELLNSYLQQIYQKNL 298

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ +L+  E +   L E                     ++    +L  +  S+      
Sbjct: 299 YPDVLLIPNEIDLLDLDENLLEFSSYSFNNQDDIFIKLAKQNAVDSLNKSILSNNVNSGD 358

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E+    IL    +   +   PKRIEI+D S+I      G  +V      V+N++RK+N+ 
Sbjct: 359 EL---EILDQLQQISNINKYPKRIEIFDISNIYNQFITGACIVYINAKPVRNEFRKYNID 415

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
                       M    +R   ++ + E+                PD++I+DGG  Q+ A
Sbjct: 416 SQYTSDYARMKFMLE--KRFLKRIKEKEQ---------------LPDLIIVDGGIIQIHA 458

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A+ VL KLN+  +I +I ++K             +  + + +     +  F+  L+    
Sbjct: 459 AKEVLNKLNL--KINVIGLSKDNNHKTRYLIDIFE--QTIDIKNFKKLYNFLTSLQIRVD 514

Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            +A +  RK+        +  I G+G      L + F T+  I  +S + L  I   +KK
Sbjct: 515 EYAKSGFRKKYHNQLNDQILLIKGVGKKTNLKLYKHFKTIDNIKNASFDELNKIIN-NKK 573

Query: 599 IACKIYNHFHK 609
           I   I ++F K
Sbjct: 574 ITNLIISNFKK 584


>gi|289642290|ref|ZP_06474439.1| excinuclease ABC, C subunit [Frankia symbiont of Datisca glomerata]
 gi|289507925|gb|EFD28875.1| excinuclease ABC, C subunit [Frankia symbiont of Datisca glomerata]
          Length = 772

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 146/506 (28%), Positives = 229/506 (45%), Gaps = 48/506 (9%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA NL+ R+ +Y    +N   R  HM++  +++ +TV 
Sbjct: 13  SVPETPGVYRFFDEHGRVVYVGKAKNLRARLSNYFTDIHNLHPRTQHMVTTASSVDWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+P + +T   + P L   R +      YFG
Sbjct: 73  STEVEALQLEYTWIKEFDPRFNVRYRDDKSYPSLAVTLYEQFPRLQVMRGAKRPGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F  R+C+  VF+      RPCLL  I RCS PC G + + ++
Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSTGVFKQAARIGRPCLLGYIDRCSAPCVGRVDAAEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              V +   F+SG       ++ R M +A  ++ YE A   RD + AL         +  
Sbjct: 193 RRIVEDFCDFMSGQTGRYIRRLEREMGEAAAEQRYEQAARLRDDIGALRRAMEKQAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
                D  +   ++  A +Q  +   G+ RG   + +    + T  +++  FL Q Y   
Sbjct: 253 DGTDADVVAFAQDELEAAVQIFYVRDGRVRGQRGWVVDKIEDLTTGELVEQFLTQEYLSD 312

Query: 297 --------------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKIT 330
                                        P  +L+ +   +T ++        G +V + 
Sbjct: 313 STGASPASAGASAPSAGAGRVGTGVTNEIPREVLVPQLPPDTEVVADLLGIARGGRVDLR 372

Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYD 386
           VP++G+KR ++E    NA ++         S        L + +    L   P RIE +D
Sbjct: 373 VPRRGDKRTLMETVEHNARQAFALHRMRRASDISARSRALSELSDALGLADPPLRIESFD 432

Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE 446
            S++ G   V  MVV  +    K++YR+F +    V  QDD A M   + RRFS+ +  +
Sbjct: 433 ISNLQGTEVVASMVVFEDGLPRKSEYRRFAIRG--VDGQDDVASMHETITRRFSRYLAEK 490

Query: 447 ENLNFHPKKQEYSFPSWPDVVILDGG 472
                    +   F   PD+    GG
Sbjct: 491 --------ARTGEFAGLPDLADPVGG 508



 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 451 FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE---NRITIISIAKGPKRSAGM 507
                +   F   P++V++DGG  Q++AA+  L  L ++     + +  +AK  +     
Sbjct: 554 DPTTGRPRRFAYPPNLVVVDGGPPQVAAARRALDALGIDSGPGGVALCGLAKRLE----- 608

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPL 566
           E +   + + ++L      LY +QR+RDEAHRFAIT HR++R K+   S LD+I G+G  
Sbjct: 609 EVWLPDEEDPVILPRTSEALYLLQRIRDEAHRFAITYHRQKRSKSMVRSALDDIPGLGET 668

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           R++ LL++FG++  I +++ E +A + GI +  A  I +     +  
Sbjct: 669 RRKALLRAFGSLARIRQATVEQIAEVPGIGRHTARAIVDALAPTSPG 715


>gi|313665188|ref|YP_004047059.1| excinuclease ABC, C subunit [Mycoplasma leachii PG50]
 gi|312949521|gb|ADR24117.1| excinuclease ABC, C subunit [Mycoplasma leachii PG50]
          Length = 584

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 149/607 (24%), Positives = 270/607 (44%), Gaps = 35/607 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +   PG Y  L+    V+YVGKA NL+KR+ +Y +   +  + T +I +I ++++ +   
Sbjct: 10  LTNKPGCYLFLNKDNEVIYVGKAKNLKKRVSTYFNKA-YNIKTTRLIREITDLKYFIVDN 68

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E E+LLLE N+IK+ +P++N+LL DDK++PYI IT++   P     R         +GP 
Sbjct: 69  EKESLLLEKNLIKKYRPKYNVLLNDDKTYPYIAITNQKD-PMYKYVRKYEKKALRNYGPL 127

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
                    + ++QR F L+ C   +     +PCL + + +CSG C   +    Y   + 
Sbjct: 128 PIGSNARSILLTIQRLFPLKMCKGDL----KKPCLYYHLNQCSGACFKTVDPSYYEYQIK 183

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  KF  G  + +K+ + + M +A+    +E A   +D++ +L  I    +        +
Sbjct: 184 QVDKFFKGEINQVKQTLVKQMQKASDNLQFEQAKRIKDQITSLDFITTKQNVDIVTNKNI 243

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D  +   ++   C    F+  GQ       +++        ++L+ +L+Q Y     P+ 
Sbjct: 244 DVINYEISEEKICFVMLFYRLGQLTYKD-EYIQNYEGQDLDELLNSYLQQIYQKNLYPDV 302

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +L+  E +   L E                     ++    +L  +  S+      E+  
Sbjct: 303 LLIPNEIDLLDLDENLLEFSSYSFNNQDDVFIKLAKQNAIDSLNKSIISNNVNSGDEL-- 360

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
             IL    +   +   PKRIEI+D S+I      G  +V      V+N++RK+N+     
Sbjct: 361 -EILDQLQQVSNINKYPKRIEIFDISNIYNQFITGACIVYINAKPVRNEFRKYNIDSQYT 419

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
               D A M+ +LE+RF +  K +E L              PD++I+DGG  Q+ AA+ V
Sbjct: 420 ---SDYARMKFMLEKRFLKRKKEKEQL--------------PDLIIVDGGIIQIHAAKEV 462

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L KLN+  +I +I ++K             +  + + +     +  F+  L+     +A 
Sbjct: 463 LNKLNL--KINVIGLSKDNNHKTRYLIDIFE--QTIDIKNFKKLYNFLTSLQIRVDEYAK 518

Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           +  RK+        +  I G+G      L + F T++ I  +  + L  I   +KKI   
Sbjct: 519 SGFRKKYHNQLNDQILLIKGVGKKTNLKLYKHFKTIENIKNADFDELNKIIN-NKKITNL 577

Query: 603 IYNHFHK 609
           I ++F K
Sbjct: 578 IISNFKK 584


>gi|289547961|ref|YP_003472949.1| excinuclease ABC, C subunit [Thermocrinis albus DSM 14484]
 gi|289181578|gb|ADC88822.1| excinuclease ABC, C subunit [Thermocrinis albus DSM 14484]
          Length = 565

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 136/612 (22%), Positives = 259/612 (42%), Gaps = 54/612 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            ++ PE  GVY      GR +Y+GKA N+++R+  +  ++    R   ++ Q +++ + +
Sbjct: 7   LKRAPESCGVYLFQ-RKGRPIYIGKAKNIKERLLQHYRASTSDPREKAILEQADSVDWFI 65

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T  E EAL LE ++I+  KP++NIL +    +P +LIT +   P L   R +   +G  F
Sbjct: 66  TRNEFEALTLEIDLIQTHKPKYNILHKYGAGYPMLLIT-EDPFPTLRVVRGAHH-RGKLF 123

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +     K    +   F LR+C       R  PC+ + +  CSGPC G+I  E Y+ 
Sbjct: 124 GPFFTASKAYKVKRLVHSLFKLRTCDPMPI--RKEPCMDYHLGLCSGPCCGKIDREDYLL 181

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V  A+  LSG    +   + + ++Q  +  ++E   + RD++ AL  +           
Sbjct: 182 SVMSAESMLSGEVGEVLPLLYQRIDQLMVNMEFEKCAVIRDQIQALERLGQGQKVSPLPY 241

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
               +++              G         +     +  ++     +   +        
Sbjct: 242 ASADVFYRMGNVV--------GIFLIRSHKLVDKQIHTLESESQLEEMLAGFYYANVLPQ 293

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +LL        L++    +     + +      E  ++ +    N   +           
Sbjct: 294 VLLVNFPISEELIQWLQKRGACKILPL------EDPELEKLLRENVGAAVP--------- 338

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
             +L++   K     +P+ IE +D SH  G   VG  VV  +    K +YR++ +     
Sbjct: 339 YQVLREEFLKTLSVPLPEVIEGFDVSHFYGEYVVGSCVVWEKGFMNKKRYRRYRIKS--F 396

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
           +  +D   +  +L RR  +L + EE +              PD+ ++DGG GQL+    V
Sbjct: 397 EGINDYMALEEILSRRARRLKEGEEKM--------------PDIWLIDGGVGQLNVGIRV 442

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
             + ++   I ++++AK        E    + G  + L     +      +RDEAHRFA+
Sbjct: 443 RDRWDL--PIKVMALAKEE------ELLITEDGRKIPLKENPLLYKVFGLIRDEAHRFAL 494

Query: 543 TTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           + +R+ R K A    LD++ GIG ++KR++ ++F  +    ++ P  L  + GI   +  
Sbjct: 495 SYNRQLRLKNALTDILDKVKGIGEVKKRIIYRNFDNLYEFLQADPNYLKQL-GIDPSLKQ 553

Query: 602 KIYNHFHKNTSH 613
           ++  +   +   
Sbjct: 554 EVEKYLAGDKGS 565


>gi|331697226|ref|YP_004333465.1| UvrABC system protein C [Pseudonocardia dioxanivorans CB1190]
 gi|326951915|gb|AEA25612.1| UvrABC system protein C [Pseudonocardia dioxanivorans CB1190]
          Length = 742

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 139/493 (28%), Positives = 220/493 (44%), Gaps = 28/493 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRV+YVGKA +L+ R+ SY         R   M++    + +TV 
Sbjct: 13  SIPEAPGVYRFSDPRGRVIYVGKAKSLRSRLNSYFADVAGLHPRTRQMVTTAAAVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE N IK   PRFN+  RDDK++P + +T   + P L+ +R        YFG
Sbjct: 73  RTEVEALQLEYNWIKEFDPRFNVRYRDDKTYPVLAVTLNEEFPRLHVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F  R+C+  VFR      RPCLL  I +CS PC G ++++++
Sbjct: 133 PYAHAWAIRETLDMLLRVFPARTCSAGVFRRHGQIGRPCLLGYIDKCSAPCVGTVTADEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V +   FL+G    +  ++ R M  A    ++E A   RD + AL         +  
Sbjct: 193 RTIVDDFCDFLAGRTDRMVRELERRMEDAAGALEFEKAARLRDDIGALRRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
                D  +   +   A +Q      G+ RG   + +     +  +Q++  F+ QFY + 
Sbjct: 253 DGTDADVVAFAEDDLEAAVQVFHVRGGRVRGQRGWVIDKVEPTDTSQLVGRFVSQFYGEQ 312

Query: 297 -----------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
                      +P P  IL+ E   +   L        G +V++ VP++G+KR + E   
Sbjct: 313 AALAGSADDAHQPVPREILVPELPPDAEALAEWLSGLRGSRVQLRVPRRGDKRALAETVA 372

Query: 346 INAHRSHTQKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401
            NA  +  +          +    L++      L   P R+E  D SH+ G   V  +VV
Sbjct: 373 RNASEAFARHKLRRAGDLTARSAALQEIQDALELESAPLRMECIDVSHVQGTDVVASLVV 432

Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN---EENLNFHPKKQEY 458
             +    K+ YR+F +         D A +  V+ RRF + +     E  ++        
Sbjct: 433 FEDGLARKSDYRRFEIKGGADGG--DVAAIAEVVRRRFRRYLAETAVETAVDPGGGAANG 490

Query: 459 SFPSWPDVVILDG 471
                 D    DG
Sbjct: 491 RPAVVADGSAADG 503



 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 17/230 (7%)

Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN 450
            G  AV       +   V ++  +      D     D +             I       
Sbjct: 489 NGRPAVVADGSAADGHPVGDEEPRTRNAAVDSAEPLDISATVSAPSATVRTGID------ 542

Query: 451 FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF 510
                +   F   P+++++DGG  Q+ AA  VL +L +++ + +  +AK  +     E +
Sbjct: 543 -PHTGRPRKFAYAPNLLVVDGGPPQVEAAAQVLGELGIDD-VAVCGLAKRLE-----EVW 595

Query: 511 FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKR 569
                + ++++     LY +QR+RDEAHRFAIT HR+RR K    S LD + G+GP R++
Sbjct: 596 LPADPDPVIMSRTSEGLYLLQRIRDEAHRFAITYHRQRRSKGMVASELDAVPGLGPSRRQ 655

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS---HTPT 616
            LL+ FG+V+ +  +  + +A++ G  ++ A  +    H         PT
Sbjct: 656 ALLKQFGSVRKLRAAGVDEIAAVPGFGRRTAAAVVAALHGEAPAGDAQPT 705


>gi|289811655|ref|ZP_06542284.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 442

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 140/415 (33%), Positives = 220/415 (53%), Gaps = 9/415 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 309

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 310 MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALVTK 369

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           LS + +    L        LP I  R+E +D SH MG   V   VV   N  V  
Sbjct: 370 LSQQSTITQRLTALATVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANRAVTR 423


>gi|237751708|ref|ZP_04582188.1| excinuclease ABC subunit C [Helicobacter bilis ATCC 43879]
 gi|229373074|gb|EEO23465.1| excinuclease ABC subunit C [Helicobacter bilis ATCC 43879]
          Length = 563

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 157/576 (27%), Positives = 249/576 (43%), Gaps = 55/576 (9%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-----NNHTHRITHMISQIN 56
             +++P  PG+YQ  D   ++LYVGKA NL+KR+KSY          ++ RI HM++QI 
Sbjct: 8   QLQKIPNEPGIYQYYDKDDKLLYVGKAKNLKKRVKSYFTKECSPNPKNSLRIQHMVAQIA 67

Query: 57  NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116
           +I   +   E EAL+LE + IK   P++NILLRDDK++PYI I      P     R    
Sbjct: 68  HIHTIIVANEHEALILENSFIKSQNPKYNILLRDDKTYPYITINLNDCYPRFSITRRIIK 127

Query: 117 IQGS-YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
            + + YFGP+      ++ + SL   F +   A        +PCL +QI +C G C+ + 
Sbjct: 128 HKDTLYFGPYP--KGAKEILQSLYELFPIVQQA--SCLKGKKPCLYYQIGKCLGVCSIKD 183

Query: 176 SSEKYMEFVHEAKKFL-SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           S+ K     +  +  +       +++ +  +M     KE +E A I +D +  L      
Sbjct: 184 SNTKAEYDSYIQQAIILMKNTSKMQKVLESSMLSFAEKELFEQAKICKDCIDVLQETTKF 243

Query: 235 NDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR 291
                      D +S     + A +   F   G+   T   F+K +  +         L 
Sbjct: 244 CAVDMKKLYNADVYSFVLQGSNAILFKLFVRDGKVVSTHHQFVKPNMTNDAENPSQKELI 303

Query: 292 QFYTDKPCPENILLSEEAE------------ETSLLEISFFKQYGYKVKITVPKQGEKRK 339
           +           LL    E             T  L+        +  K+  P++GEK +
Sbjct: 304 REELACEIYTQALLKILKEGTLCDDIILADISTESLQTLKDSIPEFANKLFAPQKGEKLR 363

Query: 340 IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
           +   A  NA    T K +     + +L++  + F+L H    IE++D SH      VG M
Sbjct: 364 LATLARTNALHILTHKTNLYAKQEQVLQEIKELFSLDHEITSIEVFDTSHHSSSFIVGGM 423

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           V   +  F K  YR +NL       +D+ + MR +L RR     +N              
Sbjct: 424 VSYVDYDFYKPGYRHYNL-----SGKDEYSQMREMLTRRAKSFDEN-------------- 464

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKFFVK 513
               P + +LDGG  Q++ A  +L+      R+++++IAK  +           +     
Sbjct: 465 --PAPSLWLLDGGLAQINLALEILESSG--ARVSVLAIAKEKRDSKAYRAKGHAKDIVRS 520

Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549
           K     L   DP L F+Q+LRDEAHRFAIT HR ++
Sbjct: 521 KHVEFRLQANDPRLQFLQKLRDEAHRFAITFHRNKK 556


>gi|291003605|ref|ZP_06561578.1| nuclease subunit of the excinuclease ABC complex [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 698

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 144/489 (29%), Positives = 220/489 (44%), Gaps = 29/489 (5%)

Query: 13  YQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y+  D  GRV+YVGKA +L+ R+ SY    +    R   M++    +R+TV  TEVEAL 
Sbjct: 2   YRFHDAEGRVIYVGKAKSLRSRLSSYFADLSGLHPRTRQMVTTATGVRWTVVGTEVEALQ 61

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131
           LE + IK   PRFN+  RDDKS+P + +T     P LY  R        YFGP+A   A+
Sbjct: 62  LEYSWIKEYDPRFNVRYRDDKSYPVLAVTLHEDFPRLYVTRGPRRKGVRYFGPYAHAWAI 121

Query: 132 EKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G + ++++   V +  
Sbjct: 122 RETLDMLLRVFPARTCSAGVFKRHSQIGRPCLLGYIGKCSAPCVGRVDADEHRRIVEDFC 181

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCF 245
            F +G    L  K+ R M QA+ + ++E A   RD L AL         +       D  
Sbjct: 182 DFFAGRTDTLIRKLDREMRQASEELEFERAARLRDDLEALRRAMEKQAVVLGDGTDADVI 241

Query: 246 SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-------- 297
           +   ++  A +Q      G+ RG   + +    E+  A +   FL QFY ++        
Sbjct: 242 AFADDELAAAVQVFHIRGGRVRGQRGWVIDKVEETGTAALAERFLTQFYGEQAALAEQAD 301

Query: 298 ----PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
               P P  +L+ E   E   +        G +V + VP++G+KR ++E    NA  + T
Sbjct: 302 AGGTPVPREVLVPELPPECEAITEWLSGLRGGRVAVRVPQRGDKRALMETVERNAKEAFT 361

Query: 354 QKLSTEI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           Q          +    L++      L   P RIE  D SH+ G   V  +VV  +    K
Sbjct: 362 QYKLRRAGDLTARSAALQELQDALGLDTAPLRIECIDVSHVQGTDVVASLVVFEDGVPRK 421

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN----EENLNFHPKKQEYSFPSWPD 465
           ++YR+F +         D   +  V+ RRF++ +K     +E  N              D
Sbjct: 422 SEYRRFAVREGAEGG--DVGSIAEVVRRRFARYLKETAPPQEGGNGSAGATAAVENGSTD 479

Query: 466 VVILDGGKG 474
            V  +G  G
Sbjct: 480 TVAANGSVG 488



 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 7/163 (4%)

Query: 443 IKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502
            + E         +   F   P+++++DGG  Q +AA   L +L + + + +I IAK  +
Sbjct: 521 QEAERTGIDPETGRPRKFAYPPNLLVIDGGAPQANAAADALTELGITD-VAVIGIAKRLE 579

Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEIN 561
                E +   + E ++L      LY +QR+RD AH FAI  HR++R K   S  LD I 
Sbjct: 580 -----EVWLPDEAEPVILPRTSEALYLLQRVRDAAHDFAIRYHRQKRSKRMKSSTLDSIP 634

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           G+G  R+  LL+ FG+++ + +++ E ++++ G  ++ A  ++
Sbjct: 635 GLGEARRTALLKHFGSLRRLRQATVEEISAVPGFGQRTAETVH 677


>gi|149918455|ref|ZP_01906945.1| excinuclease ABC, C subunit [Plesiocystis pacifica SIR-1]
 gi|149820755|gb|EDM80165.1| excinuclease ABC, C subunit [Plesiocystis pacifica SIR-1]
          Length = 715

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 152/522 (29%), Positives = 246/522 (47%), Gaps = 36/522 (6%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E++P  PGVY M D  GRV+YVGKA  L++R++ Y + ++    +  +   + +I   +T
Sbjct: 35  ERLPADPGVYVMRDRKGRVVYVGKARRLRQRVRQYFNGHDTRRFVPTLGRILGDIEAVIT 94

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             + EA+LLE N+IKR  PRFN+ LRDDK +  + +      P L   R+ ++ + +Y+G
Sbjct: 95  SNDKEAMLLENNLIKRYHPRFNVKLRDDKQYLVLRLDPDKDWPKLDVVRNIASDKANYYG 154

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  +   T+  + R F LR+C+D V R+R RPCL +QI RC  PC  E+    Y E 
Sbjct: 155 PYHSATSARHTLRVVNRHFQLRTCSDFVLRNRKRPCLQYQIGRCPAPCVYEVDEGAYAEQ 214

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--- 240
           V +   FLSG +  L + ++  M  A    ++E A   RD+L A+       + +     
Sbjct: 215 VKDVGLFLSGRHTELVKGLSARMEAAAENLEFEQAARIRDQLRAIETSLQRQEVVGTDEL 274

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-C 299
             D   +Y               G+  G+  F   +  E  + ++LS FL  +Y + P  
Sbjct: 275 DQDVIGMYREGGSVEFVVMHVRAGKLIGSQRFG-ASGMELPDPEVLSSFLSAYYDEAPLV 333

Query: 300 PENILLSEEA--EETSLLEISFFKQ-------YGYKVKITVPKQGEKRKIIEQALINAHR 350
           PE +LL  E   ++ + L     ++           V I VPK+G ++++   A  NA  
Sbjct: 334 PEELLLPFELAEDDAAPLADWLSERRGELLADRRRSVAIKVPKRGPRKRLTLLAERNAAS 393

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           +   + S     +  L    ++  L  +P+RIE YD SHI G   V  MVV  +    K 
Sbjct: 394 NFATRRSKRDDAEQALTRLRERLRLSRLPRRIECYDVSHIQGSDPVASMVVFTDGQPDKA 453

Query: 411 QYRKFNLHPNDVKT----------QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460
            YR F +                  DD   M  VL RRF + +          +  E   
Sbjct: 454 AYRHFKIKGQVDDGGAGLSQGERQNDDFRSMYEVLTRRFRRALD---------RGAEDDS 504

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAK 499
            + PD++++DGGKGQL      ++ + +   +  + ++S+AK
Sbjct: 505 WALPDLIVIDGGKGQLGRVIAAMQDMGIALGDEGVDLVSLAK 546



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 1/109 (0%)

Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLD 558
              +      F     +A+ L      LY + RLRDEAHRFAIT HRKRR K+A  S LD
Sbjct: 604 DEGKVKPERVFVPGARDAIALAHGSSELYLMTRLRDEAHRFAITHHRKRRGKRALTSTLD 663

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+GP  K+ LL+ FGTVK I  +  + LA ++G+  K+A +I+   
Sbjct: 664 GIKGVGPATKKALLRHFGTVKAIRAADVDALAEVKGVGPKLAEQIHASL 712


>gi|163782187|ref|ZP_02177186.1| repair excision nuclease subunit C [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882719|gb|EDP76224.1| repair excision nuclease subunit C [Hydrogenivirga sp. 128-5-R1-1]
          Length = 562

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 147/602 (24%), Positives = 248/602 (41%), Gaps = 52/602 (8%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           PE PGVY       +  Y+GKA NL+KR++ ++   +   +   ++    ++ + VT  E
Sbjct: 11  PEKPGVYIFKGKK-KPTYIGKAKNLRKRLQQHLKLADIDPKEFAILRDSLSLEWIVTRNE 69

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EAL+LE ++I+  KPR+N+L +    +P +L+T     P +   R +      Y GPF 
Sbjct: 70  FEALVLEVDLIQSHKPRYNVLHKYGGGYPMLLLT-DEPYPTVKVVRGTEHRGTLY-GPFL 127

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
                 K    + + F LR+C       R  PC+ + +  CS PCT  +S E+Y   V  
Sbjct: 128 QASKAYKVKKLIHKLFKLRTC--DPLPERKEPCMDYHLGLCSAPCTKFVSKEEYQLSVEG 185

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246
            K  LSG    +  ++   + + + +  +E     RD++ AL +I               
Sbjct: 186 TKALLSGEVAEVLPRLYEKIEEFSGEMLFEKCAHVRDQIKALENISRGQSVSGLPYSSAD 245

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           L++              G+      +      +    + L  FL  +Y     PENIL +
Sbjct: 246 LFYRIGRRVG-LFLIRGGKLISKEIY------DLEREEELEEFLLGYYYSNFVPENILTN 298

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
                  L E       G              +++  A  N   + + ++  E   Q + 
Sbjct: 299 FF-----LSEEVRTWIEGRTKGRVEFSSSIPTELVSLAEENVKENISLEVLEEEFRQKLG 353

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
                       PK IE +D SH  G   VG  VV  +    K +YR++ +    +   D
Sbjct: 354 IQL---------PKTIEGFDISHFYGEDIVGSCVVWEKGQMNKRRYRRYKVKS--LSGID 402

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D   +R VL RR  +  +  E                PD+ ++DGGKGQL+ A  V    
Sbjct: 403 DYGALREVLTRRAMRFKEKRE--------------PIPDLWLIDGGKGQLNVAVSVRDTF 448

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
            +     + S+AK        E  F   GE + L     +      +RDEAHRFA++ +R
Sbjct: 449 GL--PFKVFSLAKEE------EILFGDGGELVRLREEPLLYRVFGLIRDEAHRFALSYNR 500

Query: 547 KRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K R K+A    L ++ G+G  RK+++ ++F  +    R+  E L  + G+   +  ++  
Sbjct: 501 KLRTKRALEDVLSKVKGVGETRKKIIYRNFDNLYEFIRADEERLRKL-GLPPSLQQEVKK 559

Query: 606 HF 607
           + 
Sbjct: 560 YL 561


>gi|154248895|ref|YP_001409720.1| excinuclease ABC subunit C [Fervidobacterium nodosum Rt17-B1]
 gi|229558029|sp|A7HJI0|UVRC_FERNB RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|154152831|gb|ABS60063.1| excinuclease ABC, C subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 563

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 152/606 (25%), Positives = 264/606 (43%), Gaps = 56/606 (9%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E++P   GVY         +Y+GKA  L+KR+ S+  +     +   ++ + ++++  +
Sbjct: 7   LEKIPNKSGVYIFK-KGEEYIYIGKAKELKKRLTSHFKA--KDGKSKLIVEEADDLQVIL 63

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
              E EAL+LEANMI + KP++N +L+D + +PYI I++   IP L   R+    +G ++
Sbjct: 64  LDNEKEALILEANMIYKYKPKYNAMLKDTQVYPYIRISNDE-IPYLEIVRN-RKGEGEFY 121

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +V    +    L++ +  R+C   + + + +PC+ + +  CSG C  E S E Y +
Sbjct: 122 GPFTNVYFTRQLFEVLRKVYKFRTCKRDITKLK-KPCMDYHLGLCSGVCINEESPEDYKK 180

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            ++E K  L G   N+   I   M Q     D+E+A  +RD L   + +      +    
Sbjct: 181 KINEVKNVLKGKFSNVISFIKLKMEQHARLLDFENAAKYRDILLNFNKVMESQGVVLPES 240

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
               L                G       +                F+  FYT       
Sbjct: 241 VNIDL-VVGKHKTFLVFKIRSGYLISKLVYEYDGHIVD--------FIELFYTQNTS--- 288

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
                +  E  ++E    +       + +     K  +  Q L  A  +   ++   +++
Sbjct: 289 -----DIPEKIIVEKENKELKNIAKILGIKIAQAKDDLELQLLNKAIDNLNYEIGLILTN 343

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
           ++ILK   +   L  +P RIE  D SH+ G + V  +VV       K +YR++ L     
Sbjct: 344 KIILKQMKELLGLMKLPNRIEGIDISHLAGKNTVASLVVFENGEIKKEEYRRYKLGDIL- 402

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD   +R+V+++R+++                    + PD++ +DGG GQ++AA   
Sbjct: 403 ---DDFESIRIVVKKRYTK-------------------HNVPDLLFIDGGIGQVNAAYQS 440

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           LK++  E    +I +AK        E      GE + L    P+L  + ++RDE HR A 
Sbjct: 441 LKEIGKERECDVIGLAKEE------ETIVTLHGE-IRLAFDHPVLRLLVKIRDETHRVAN 493

Query: 543 TTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
              R    KK+  S LDEI  IGP RK+ LL+ + +++ I   S   +  +  I KK   
Sbjct: 494 EFTRNLSTKKSLRSILDEIKWIGPKRKKTLLERYTSIEEILSVSRSEIEQL--IGKKATE 551

Query: 602 KIYNHF 607
            + N  
Sbjct: 552 SLLNEL 557


>gi|302561256|ref|ZP_07313598.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000]
 gi|302478874|gb|EFL41967.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000]
          Length = 518

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 219/468 (46%), Gaps = 18/468 (3%)

Query: 23  LYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
           +YVGKA +L++R+ +Y         R   M++   ++ +TV  TEVEAL LE + IK   
Sbjct: 2   IYVGKAKSLRQRLANYFQDLAGLHPRTRSMVTTAASVEWTVVSTEVEALQLEYSWIKEYD 61

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRT 141
           PRFN+  RDDKS+PY+ +T   + P +   R        YFGP+A   A+  T++ L R 
Sbjct: 62  PRFNVKYRDDKSYPYLAVTMNEEFPRVQVMRGHKKKGVKYFGPYAHAWAIRDTVDLLLRV 121

Query: 142 FFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNL 198
           F +R+C+  VF++     RPCLL  I +CS PC   IS+E++ E   E   F++G     
Sbjct: 122 FPVRTCSAGVFKNAARTGRPCLLGYIGKCSAPCVDRISAEEHRELAEEFSDFMAGRTGTY 181

Query: 199 KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLAC 255
             ++ R M +A  + +YE A   RD + AL      N  +       D  ++  ++  A 
Sbjct: 182 LRRLERRMTEAAEEMEYERAARLRDDIGALKKAMEKNAVVLADATDADLIAVAEDELEAA 241

Query: 256 IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENILLSEEAEET 312
           +Q      G+ RG   +      E T A ++ + L+Q Y ++     P  +L+    +  
Sbjct: 242 VQIFHVRGGRVRGQRGWVTDKVEEITTAALVEHALQQLYGEETGDAVPREVLVPALPDPV 301

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS----HQMILKD 368
             ++    ++ G  V + +P++G+K+ ++E    NA ++     +   S        L++
Sbjct: 302 EPVQQWLTERRGSGVSLRIPQRGDKKSLMETVERNAQQALVLHKTKRASDLTTRSRALEE 361

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
            T    L   P RIE YD SH+ G   V  MVV  +    K++YR+F +       QDD 
Sbjct: 362 ITDALDLDSAPLRIECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIKG--FAGQDDV 419

Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKK--QEYSFPSWPDVVILDGGKG 474
             M  V+ RRF + +  +E     P       + P  P   + +    
Sbjct: 420 RSMHEVITRRFRRYLAEKERTGEWPDGTAPTDALPEPPAATLTEAPGP 467


>gi|315282009|ref|ZP_07870516.1| excinuclease ABC subunit C [Listeria marthii FSL S4-120]
 gi|313614354|gb|EFR87991.1| excinuclease ABC subunit C [Listeria marthii FSL S4-120]
          Length = 417

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 116/418 (27%), Positives = 193/418 (46%), Gaps = 20/418 (4%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           E   FL+GG   +K  + + M  A    ++E A   RD++ A+           N     
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQDAAENMEFEKAGEFRDQINAIETTMEKQKMTMNDFVDR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  F   G+            +++    +          +   P+ 
Sbjct: 247 DVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPPQE 306

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS----T 358
           I L  + +  ++  +          KI VP++G K+ +++ A  NA  +  +K       
Sbjct: 307 IYLPNDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLERN 360

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ 
Sbjct: 361 EERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYK 417


>gi|47459380|ref|YP_016242.1| excinuclease ABC nuclease subunit C [Mycoplasma mobile 163K]
 gi|47458710|gb|AAT28031.1| excinuclease ABC nuclease subunit C [Mycoplasma mobile 163K]
          Length = 565

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 138/617 (22%), Positives = 238/617 (38%), Gaps = 61/617 (9%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +   PGVY   +  G ++YVGKA NL+ R+K Y     ++++   ++  I++   
Sbjct: 5   LDLDNVTTKPGVYLWKNKHGNIVYVGKAKNLRSRMKQYFSGMLNSYKTIKLVQIIDSYEV 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQG 119
            VT +E EAL+LE N+I+  KP FNILL DDK +PYI I+       +   R        
Sbjct: 65  IVTTSEKEALILERNLIETHKPSFNILLIDDKRYPYIKISLLKNDIEIKMVRRYKKQNNS 124

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GPF +    +  IN L R                            G      ++  
Sbjct: 125 FYYGPFPTGFGAKVLINLLIRETKFE----------------------KGLPVVNKNASY 162

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           + E   + K  L   N      + + M  +     +E A   +  +  L  ++N+     
Sbjct: 163 WKEQFKKVKNILGVNNKEYINDLKKQMFLSAENFQFEIANEIKSTILFLEELKNNQVVEL 222

Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D      +KN   +   F+ +G    +  F L+  S+    + +  F+ ++YT 
Sbjct: 223 KNDKNIDVIGFSEDKNYIFLNMLFYRYGALLSSEDFVLEKLSDG--KETIRKFINEYYTL 280

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ +++S E     L                +          ++ +        +K 
Sbjct: 281 NLLPDELIISLEFTHNDLNFDFEILNPKRGTYKNILDNAIMSANEKREIKILE--FERKK 338

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
              I++   L++  +   L        + DNS+    S V  ++        K  Y+KFN
Sbjct: 339 EITINNIEKLEELLETKNLN----HFLVIDNSNTNNFSPVSVIISYKNGLKDKKNYKKFN 394

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           L       + D   M+    R FS+                      PD++I+DG   Q+
Sbjct: 395 LET--GDRKADVEYMKEACFRYFSK-----------------KENPIPDLLIVDGALAQV 435

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
              + +L  L +  ++ +I + K  K          +K E +       +L F++ +++E
Sbjct: 436 REVKKILASLFI--KLKVIGLVKNDKHITSHIINLKEKREEI---SDASLLIFLKSIQEE 490

Query: 537 AHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
             RFA   HR  R K      L  I GIGP  ++ LL++F     I  +S E L  I  +
Sbjct: 491 VDRFAKFHHRSLRTKNTLEGFLLSIKGIGPKTEKKLLENFKNYSEIYNASLEDLEKI--L 548

Query: 596 SKKIACKIYNHFHKNTS 612
           SK IA  +Y    KN +
Sbjct: 549 SKSIAKTLYEKIKKNIN 565


>gi|162455679|ref|YP_001618046.1| excinuclease ABC, subunit C [Sorangium cellulosum 'So ce 56']
 gi|161166261|emb|CAN97566.1| excinuclease ABC, subunit C [Sorangium cellulosum 'So ce 56']
          Length = 742

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 137/462 (29%), Positives = 228/462 (49%), Gaps = 10/462 (2%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIRFTVTC 64
           P  PG Y  +D AG V+YVGKA +L+ R++SY   +    R  I  +   + ++   VT 
Sbjct: 22  PTTPGCYLFIDKAGAVVYVGKAKSLRSRVRSYFQESGSDARYFIPILRKIVADLETVVTA 81

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EA +LE  ++K+ KPRFN+ LRDDK F  + +  +   P L   R  +  +  YFGP
Sbjct: 82  TEKEAAVLENELVKQHKPRFNVKLRDDKDFLCLKLDTQKAWPMLETVRRPAPDKARYFGP 141

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           + S  +  +T++ + + F LR+C+D+    R RPCL +QIKRC  PC  ++  E Y E V
Sbjct: 142 YHSATSARRTLHLVNKHFQLRTCSDTEMASRRRPCLQYQIKRCLAPCVMDVDRELYTEMV 201

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241
                FL G +  L  ++   M  A+ + ++E A I+RD+L A+  ++     +Y     
Sbjct: 202 RSVALFLEGRHDELTGELTTRMRDASRELEFERAAIYRDQLRAVEAVREAQRVVYVKDVD 261

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TDKPC 299
            D   +Y    L  ++      G+   T +F L+ + E  + ++L  FL ++Y       
Sbjct: 262 QDVVGIYREGTLVEVEVILVRRGRVTDTLSFSLR-NMELPDDEVLGGFLNEYYGVASTTI 320

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P+ +L+    +    +      + G KV + VP++G +  +++ A  NA  +  +K  + 
Sbjct: 321 PDEVLVPVLPDGAEGVAEWLGDRRGRKVALFVPQRGPRVDLLKMANENAAHAFREKQRSS 380

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
              +  L++  ++  LP +P+RIE  D SH+ G   VG +V + +    K +YR FN+  
Sbjct: 381 DDLEARLEEIRERLRLPTLPRRIECCDISHLGGGDTVGSIVALLDGQPDKKRYRSFNVKS 440

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461
             V   DD A M  VL RRF +     +         E +  
Sbjct: 441 --VADGDDYAAMYEVLSRRFRRGKAARQASPASTADSEAAPG 480



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 10/165 (6%)

Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
           +             +        PD+ ++DGG+GQL  A    + L +   + I+ +AK 
Sbjct: 546 RESAGSGGDVSRRAEAGGGEWDLPDLFVVDGGRGQLQVALSAARDLGLHG-LPIVGLAKE 604

Query: 501 PKRSAGM----EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH-RKR--RKKAA 553
            +   G       +   +   + L      L+F+ R RDEAHRFA   H RKR  + +  
Sbjct: 605 RETQTGEKLVDRVYLPGQKNGIPLRSTSSALFFLARARDEAHRFAN--HARKRLGKARRL 662

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            S +++I G+G   +  LL+  G+++ + R++   +  + G++K+
Sbjct: 663 RSEIEDIPGLGSAVRTALLRELGSMEGVRRATDAQILGVTGVTKR 707


>gi|288818512|ref|YP_003432860.1| excinuclease ABC subunit C [Hydrogenobacter thermophilus TK-6]
 gi|288787912|dbj|BAI69659.1| excinuclease ABC subunit C [Hydrogenobacter thermophilus TK-6]
 gi|308752102|gb|ADO45585.1| excinuclease ABC, C subunit [Hydrogenobacter thermophilus TK-6]
          Length = 561

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 145/602 (24%), Positives = 263/602 (43%), Gaps = 55/602 (9%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           PE  GVY + + + +V+Y+GKA N+++R+  +        +   ++S+  ++ + +T  E
Sbjct: 11  PEKTGVYIIKNSS-KVIYIGKAKNIRERLLQHYRQKETDAKERAIMSEARHLEWIITRNE 69

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EAL LE ++I+  KP++N+L +    +P +LIT +   P L   R  S  +G  FGPF 
Sbjct: 70  FEALTLEIDLIQLHKPKYNVLYKYGGGYPLLLIT-QDAYPTLKVVRGHS--EGMVFGPFF 126

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           S    +K    L R F LR+C       R  PC+ + +  CS PC G IS E+Y   V  
Sbjct: 127 STGKAKKVKRLLHRLFRLRTC--DPMPQRKEPCMDYHLGLCSAPCCGYISREEYELSVRS 184

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246
           A   LSG   ++  ++ + +++ + +  +E     RD++ AL ++          +    
Sbjct: 185 AISLLSGDVSSVLPELYKAIDRYSQELKFEKCAQIRDQIIALENLAKGQKVSNIPIHSAD 244

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
           ++++                  +     K      + Q     +  FY   P P++++ +
Sbjct: 245 IFYSMGRLLGIF-------LIRSSKLVDKEVILLEDEQQKEEVILGFYYSNPLPQHLITN 297

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
            +  +  L  +S   +  +          + R++      N        L         L
Sbjct: 298 FDLPDEVLKWLSQRGRVSFDTL-------KDRELENIIKENMGDHVDLAL---------L 341

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           +   K+         IE +D SH  G   VG  VV       K +YR++ +    VK  D
Sbjct: 342 EREFKEKLGVESLHIIEGFDVSHFYGEHLVGSCVVWERGYMNKRRYRRYKIKS--VKKVD 399

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D A +R VLERR  +L   EE                PD  ++DGG GQL  A  V +++
Sbjct: 400 DYASLREVLERRAKKLKSGEE--------------VMPDAWLIDGGYGQLRVAIEVKRRM 445

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHR 546
           ++   + + ++AK        E    + G+ + L     +      +RDEAHRFA++  R
Sbjct: 446 SL--PVLVFALAKQE------EILLCEDGKEIPLKEHPILYRVFGLIRDEAHRFALSYSR 497

Query: 547 KRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + + +      LD I G+G +++R++ ++F  +  +  +  E L  + GIS +I  ++  
Sbjct: 498 RLKIREDTTHVLDYIKGVGEVKRRIIYRNFENLYELLVADDERLKRL-GISPQIKQEVRR 556

Query: 606 HF 607
           + 
Sbjct: 557 YL 558


>gi|257458288|ref|ZP_05623437.1| excinuclease ABC subunit C [Treponema vincentii ATCC 35580]
 gi|257444315|gb|EEV19409.1| excinuclease ABC subunit C [Treponema vincentii ATCC 35580]
          Length = 665

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 138/624 (22%), Positives = 234/624 (37%), Gaps = 61/624 (9%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P+  GVY   D    V+YVGKA +L+ R+ SY  ++    +   ++S+   I +  T  E
Sbjct: 19  PKTSGVYLWRDEKDIVIYVGKAKSLKNRLSSYF-ASRRDIKTRILVSRARRIEYIQTDNE 77

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFA 126
            EALLLE N+IK+ KPR+NI L+D K++P + IT+  + P +Y+ R        YFGPF 
Sbjct: 78  YEALLLENNLIKKYKPRYNINLKDGKTYPVLKITN-ERYPRIYRTRRIQNDGARYFGPFP 136

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           +V A++  ++ ++RT+ LR C       +  PCL F I RCS PC  +IS   Y + + E
Sbjct: 137 NVPAIDDFLSLVKRTYGLRQCKHL---KKREPCLYFHIGRCSAPCADKISESDYRKDIDE 193

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DSIYNRMD 243
               L G       ++   M  A    ++E A   RD + A+  ++  N   D      D
Sbjct: 194 IALLLEGDLKKPLAELTEKMKAAAAAREFEKAARIRDGMEAVRALRGQNTVEDMDPEARD 253

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
                    L          G+  G      +T+S    A++L  FL  +YTD       
Sbjct: 254 YIGWAAEGALITFTVFKMRGGKVVGR--DLYRTESLKNEAEVLPEFLIAYYTDPKQIPPH 311

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHR------------- 350
           +     +E  L E  F  Q G KV IT      ++   E     A               
Sbjct: 312 IFVCAGQEYELAEQWFADQLGVKVTITALPLDGQKHHHETNTAAASVPSNTAVPVAAEKT 371

Query: 351 -SHTQKLSTEISHQMILKDFTKKFALPHIPKRIE-----IYDNSHIMGCSAVGCMVVVGE 404
             +  +++         +      A   +   I          +           +    
Sbjct: 372 PVYAARIADTTGTPDRAESADTTDAAAAMSPAILRRHKAALAMAQFNAREDAARRIKELG 431

Query: 405 NGFVKNQYRK---FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461
           +     + +K    +  P+ ++  D   +                 +   +   +  +  
Sbjct: 432 DFPALEELQKILSLDRPPHRIEGFDIAHLHGKYTVASLISFKDGNPDKKNYRIFRLRTTD 491

Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITI-----------------------ISIA 498
              D              + + +   + + I I                       + +A
Sbjct: 492 GIIDDYASMREAVARRYTRLLNEAAELPDLIMIDGGIGQVNAAKAVLDALELDIPLVGLA 551

Query: 499 KGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT-THRKRRKKAAYSPL 557
                    E +     + +VL  R   L  +QR+RDE HRFA T  +R R K+  +   
Sbjct: 552 -----EKNEELYRPHINKPIVLPRRSAALRVLQRVRDETHRFANTRNNRLRSKEELHLQF 606

Query: 558 DEINGIGPLRKRLLLQSFGTVKMI 581
           +++  IG  R   LL+SF +++ +
Sbjct: 607 EQLPHIGEKRAARLLRSFSSIEKL 630


>gi|153840486|ref|ZP_01993153.1| UvrABC system protein C [Vibrio parahaemolyticus AQ3810]
 gi|149745851|gb|EDM56981.1| UvrABC system protein C [Vibrio parahaemolyticus AQ3810]
          Length = 464

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 142/482 (29%), Positives = 236/482 (48%), Gaps = 30/482 (6%)

Query: 140 RTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYMEFVHEAKKFLSGGNHNL 198
           + F +R C D+V+ +RTRPCL++QI RC+GPC    IS E+Y E V   + FL G +  +
Sbjct: 1   KIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVSSIISDEEYAELVGFVRLFLQGKDQQV 60

Query: 199 KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHNKNLAC 255
            +++   M  A+ +  +E A   RD++ A+  +Q       + MD            +AC
Sbjct: 61  LKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQENGIAC 120

Query: 256 IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLSEEA-E 310
           I       G+  G+ + F K    ++  ++   FL Q+Y         P  I+L++E  +
Sbjct: 121 IHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIILNQELAD 180

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370
           +   ++ +  +  G KV       G + + ++ +  NA  + T K++ +++     K   
Sbjct: 181 DLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAITTKINHKMTINQRFKALR 240

Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAM 430
           +   +     R+E +D SH MG S +   VV    G VK +YR++N+    +   DD A 
Sbjct: 241 ETLGME-SIMRMECFDISHTMGESTIASCVVFNNEGPVKQEYRRYNI--TGITGGDDYAA 297

Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL--NV 488
           M   LERR+S+ +  E+                PD++ +DGGKGQL+ A  ++ +   + 
Sbjct: 298 MGQALERRYSKQLDIEK---------------IPDIIFIDGGKGQLNRAHEIIAQYWGDW 342

Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
             R  +I IAKG  R  G+E      GE   L    P L+ IQ +RDE+H  AI  HR +
Sbjct: 343 PKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIRDESHNHAIAGHRAK 402

Query: 549 RKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  I+   
Sbjct: 403 RGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQAL 462

Query: 608 HK 609
            +
Sbjct: 463 KQ 464


>gi|297184002|gb|ADI20122.1| nuclease subunit of the excinuclease complex [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 422

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 174/429 (40%), Positives = 251/429 (58%), Gaps = 14/429 (3%)

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---YN 240
           + +A+KFL G +  ++E +A+ M +A+    +E A   RDR+ AL+ +Q+         N
Sbjct: 1   MDDARKFLKGKSTKIQESMAKEMTEASKNLQFEKAASLRDRIKALTTVQSSQGINPQTVN 60

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D  SL+     AC+Q  F    QN G   F+ +  S +   +++  FL QFY +K  P
Sbjct: 61  EADIVSLHMEGEQACVQVFFIRANQNWGNRAFYPRNTSGADADEVMESFLAQFYDNKTPP 120

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + IL+S       LL  +   + G KV+I VPK+GE+ +++  A  NA  S  +K+S   
Sbjct: 121 KLILVSCSVANVDLLIDALTVKRGNKVEIIVPKRGERSELVLNAARNARESLARKMSESA 180

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
           +   +LK  ++ F+L  IP RIE+YDNSHI G  AVG M+V G +G++K+ YRK+N+   
Sbjct: 181 TQAKLLKGISEAFSLESIPNRIEVYDNSHIQGAFAVGAMIVSGPDGYMKSSYRKYNIRYE 240

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           D    DD  MM+ VLERRF  LIK + N              WPD++++DGG GQ+SA  
Sbjct: 241 DTVAGDDFGMMKEVLERRFKSLIKEDPNKKTEI---------WPDLLLIDGGAGQVSAVD 291

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
            +L +L V N +  + IAKG  R  G E+F+ K   A  L   DP+LYFIQRLRDEAHRF
Sbjct: 292 EILSELGV-NDVPFVGIAKGIDRDQGKEEFYCKGKPAFALQRNDPVLYFIQRLRDEAHRF 350

Query: 541 AITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AITTHR +R KA   + LDE+ G+G  RKR +L  FG+ K  SR+S + L ++EG+S K+
Sbjct: 351 AITTHRAKRSKAIGITTLDEVPGVGAARKRAILAHFGSAKSASRASLKDLKAVEGLSSKM 410

Query: 600 ACKIYNHFH 608
           A  IY+ +H
Sbjct: 411 AQIIYDFYH 419


>gi|313678413|ref|YP_004056153.1| excinuclease ABC subunit C [Mycoplasma bovis PG45]
 gi|8134796|sp|O84898|UVRC_MYCBG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|3435082|gb|AAC32309.1| deoxyribodipyrimidine photolyase [Mycoplasma bovis]
 gi|312950767|gb|ADR25362.1| excinuclease ABC, C subunit [Mycoplasma bovis PG45]
          Length = 571

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 148/616 (24%), Positives = 252/616 (40%), Gaps = 67/616 (10%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +   PGVY   D    VLYVGKA NL+KR+  Y     ++++   ++S I +   
Sbjct: 8   LMLKNVSTSPGVYLWKDAKQNVLYVGKAKNLRKRMLQYFDGAINSYKTNKLVSLIYDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +  T  EALLLE  MI R  P FNILL DD+ +PY+ +        +   R  +     
Sbjct: 68  YICKTNKEALLLEKAMIDRYNPEFNILLLDDRKYPYLKVQLLKDSLLINLSRKVNAKDSK 127

Query: 121 ---YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              Y+GPF S    +  +                        L  +    +G        
Sbjct: 128 NTFYYGPFPSGYGAKPILKL----------------------LQHETLYENGLLIKNKDY 165

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             ++   ++ K+ LS  N+N   ++   M+QA     +E A+  RD L  L  ++     
Sbjct: 166 NFWINQFNKIKEILSFKNNNYINELTNKMHQAANNMQFELALFLRDGLTYLKKLKESQII 225

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             ++    D F+   ++ L      F+ +G         L      +  + L  F  QFY
Sbjct: 226 ELSQYKNIDVFAYKTDEKLIFATVLFYRYGILINKVN--LTIPLGLSVDESLRVFFEQFY 283

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            DK  P+N+++ EE     L           + K   PK G  +K+++ A++N +  + +
Sbjct: 284 EDKILPDNLIVQEELLNFDL-------NLSSEYKFISPKIGTNKKVLDLAILNLNDYYEK 336

Query: 355 KL----STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           +     +       +L    K   LP +   I ++DNS+I   + VG  +V       K+
Sbjct: 337 EHLVIKNQLDKASNMLDSLNKYLNLPKLK-NIVVFDNSNINNINPVGVAIVYTNGIKNKS 395

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
            YRKFNL   + ++  D   ++  + + FS     ++                 D+VI D
Sbjct: 396 LYRKFNLEALNERS-ADVEYIKQSISKFFSSNKNTKDY----------------DLVIAD 438

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG  Q++ A+  LK LN+   I +I + K                  + +N    +  ++
Sbjct: 439 GGIQQVNEAKKTLKTLNI--NIPVIGLVKNEFHKTKA--LIDLDMNEIHIN-DLELYNYL 493

Query: 531 QRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            +++ E  RFA +  R R+K  +    L  I G+GP  ++ LL  F +   I  +S E L
Sbjct: 494 VQIQVEVDRFAKSHFRNRQKISSLEGKLRNIKGLGPNMEQNLLNHFKSYAKIYDASVEEL 553

Query: 590 ASIEGISKKIACKIYN 605
           + I  +   IA  I N
Sbjct: 554 SKI--VPLNIAKSIKN 567


>gi|269218452|ref|ZP_06162306.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211563|gb|EEZ77903.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 734

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 130/462 (28%), Positives = 202/462 (43%), Gaps = 35/462 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY+ LD  GRVLYVGKA NL+ R+ SY       + RI  M+     +++ V  
Sbjct: 14  IPTQPGVYRFLDGEGRVLYVGKAKNLRARLSSYFQDPAGLSDRIRAMVYTAEAVKWVVVG 73

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +EVEAL LE   IK   P FN++ RD+KS+PY+ ++   + P ++  R        Y GP
Sbjct: 74  SEVEALTLEYLWIKEFTPTFNVVFRDNKSYPYLAVSLGEEYPRVWVTRQEHRKGTRYLGP 133

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +  V A+ +T++ L   F +RSC  S F   R   RPCL   I +CS PC   ++ E++ 
Sbjct: 134 YTKVWAIRETLDQLLSVFPMRSCTKSQFNQARRLGRPCLFGHIGKCSAPCIERVTPEEHR 193

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E      +F+ GG         + M +A   E+YE+A   RD ++AL  +   N  + N 
Sbjct: 194 ETAMSLIRFMEGGGSKAIATRRKRMLEAANAEEYETAARLRDEISALEAVNERNVIVLNE 253

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296
               D F +  ++  A +Q  +   G+ RG   +          ++I+S  + Q Y D  
Sbjct: 254 NLDVDIFGIAFDEIEASVQVFYVRGGRIRGQQAWISDEIGGLELSEIVSNLVLQVYGDVK 313

Query: 297 ----------------------KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334
                                    P  I +    E+   L+    ++ G  V++  P++
Sbjct: 314 FDEVVAVPEASRSVDDRAHTPLGAIPSEIWVPGLPEDALELQKWLAERRGGTVRLKTPRR 373

Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHI 390
           G+K K+     +NA ++  +               L++      L   P RIE YD SH 
Sbjct: 374 GDKAKLAHTVRLNAEQALARHKLARAGDITVRSQALEELRDALELDRAPLRIECYDVSHT 433

Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMR 432
            G   V  MVV  +    K  YR F +   D +   D     
Sbjct: 434 QGTHQVASMVVFEDGLAKKADYRHFIVRGPDGEGAADDTAAM 475



 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 8/164 (4%)

Query: 445 NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRS 504
            +             F   PD++++DGG  Q++AAQ V+++   +  + I+ +AK  +  
Sbjct: 574 GDVPRVAGQPSAPRRFAYKPDLIVVDGGLPQVNAAQRVVEETGAD--VRIVGLAKRLE-- 629

Query: 505 AGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGI 563
              E +   +   +VL  R P L  +Q+LRDE+HRFAIT HRK+R K    S LD + G+
Sbjct: 630 ---EVWIPGEDFPVVLPRRSPSLRLLQQLRDESHRFAITFHRKKRAKAMTRSALDAVPGL 686

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           G  +++ LL S G++  I  +S E L  + GI   +A  I  HF
Sbjct: 687 GAAKQKALLGSLGSLAKIKAASQEELLKVPGIGPALARAIVEHF 730


>gi|294155657|ref|YP_003560041.1| excinuclease UvrABC system, nuclease subunit (UvrC) [Mycoplasma
           crocodyli MP145]
 gi|291600203|gb|ADE19699.1| excinuclease UvrABC system, nuclease subunit (UvrC) [Mycoplasma
           crocodyli MP145]
          Length = 575

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 141/615 (22%), Positives = 250/615 (40%), Gaps = 67/615 (10%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY   DI   V+YVGKA N++ R+  Y     ++++   ++++I +    +T
Sbjct: 15  KNLPLSPGVYLWKDINDNVIYVGKAKNIKNRMLQYFEGRLNSYKTNDLVNKIIDFDVYLT 74

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
            +E EAL+LE ++I++  P+FNILL DDK +PYI ++  +K+  +   R       +   
Sbjct: 75  KSEKEALILEKSLIEKYSPQFNILLLDDKRYPYIKVSLNNKL-IIKLDRRILKDNDNNTL 133

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF      ++ I  L+                            +G    +     +
Sbjct: 134 YFGPFPQGFGAKQIIQFLESELLYE----------------------NGLPIVKKDEYFW 171

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E  ++A + LS  +  + +KI +   +A    +YE A  + +     + ++       +
Sbjct: 172 KEKYNKAVEILSFKDKKIIQKIDQRRFEAEQLYNYELAKDYYELSKFFTLLKESQQVELD 231

Query: 241 RM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           +    D   +    N   I T ++ +G      ++ +K  +   +   L  FL + Y  K
Sbjct: 232 QQKNIDVIDIIFENNYMHITTLYYIYGVLINKDSWSIKIYNNQED--TLLEFLERIYQKK 289

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ I L +             K     + I+ PK G K+ I++ A  N      QK S
Sbjct: 290 NVPDEIYLHD-------AHHEIIKNNLEYLNISYPKIGAKKAILDMAHKNNLLYVNQKKS 342

Query: 358 T-EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF- 415
                +   ++       L  I   I  +DNS +   S  G  +        K+ YRKF 
Sbjct: 343 RITQRNIKAIESLKNLLKLKEIE-NIIAFDNSTLNNESTFGVAIAYSNGLKNKSLYRKFD 401

Query: 416 -NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
            + +   +    D   M   + R +     N                   D++I+DG   
Sbjct: 402 HSKYNESIINNSDDEYMYHNVLRYYKNNKYNVN-----------------DLIIIDGAIT 444

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QL  A+  LK+L++  +I IIS+ K  K               + + +   +  F+  ++
Sbjct: 445 QLKKAKKALKELDI--KINIISLVKDDKHKTNH--ILDANFNQIKI-IDQDLYNFLASIQ 499

Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
            E  RFA    R +R  +     L ++ GIG  ++  LL+ FGT   IS +S   L  + 
Sbjct: 500 IEVDRFAKEYLRNKRITSTLEGSLAKVKGIGSKQESKLLEHFGTYAGISNASLNELKKV- 558

Query: 594 GISKKIACKIYNHFH 608
            +S+K+A KI     
Sbjct: 559 -VSEKVAEKIVETLK 572


>gi|193216905|ref|YP_002000147.1| excinuclease ABC nuclease subunit C [Mycoplasma arthritidis
           158L3-1]
 gi|193002228|gb|ACF07443.1| excinuclease ABC nuclease subunit C [Mycoplasma arthritidis
           158L3-1]
          Length = 561

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 136/616 (22%), Positives = 233/616 (37%), Gaps = 69/616 (11%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             + +P  PGVY   D  G V+YVGKA NLQ R+  Y   N  ++++   M+ +I +   
Sbjct: 6   EIKNVPALPGVYLWKDKDGNVIYVGKAKNLQVRMSQYFDKNMLNSYKTPKMLEKIGSFST 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +  ++ EA +LE  +I + +P +N+L     SFPYI +  ++    +         + S
Sbjct: 66  FIVTSDREAFILERKLIDQYRPFYNVLFPIRSSFPYIRVKLENNGFKIDIQNHYKKEKNS 125

Query: 121 -YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GP  S    +  I                        L   +    G      S E 
Sbjct: 126 IYYGPLPSNKNFKPLIRY----------------------LNHLLLAKDGLLIKNASQEY 163

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +     EAKK +       +  + + + +      +E +  +   L  L + +    +  
Sbjct: 164 WKTKFEEAKKIMK-FGPEFRNNLKQKIKETNEVFQFEVSSFYSSILDLLDYNKQEQQTFI 222

Query: 240 NRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                 D F  Y ++ +  I   F+  G       F L     ++    ++ FL +FY+ 
Sbjct: 223 KSQKSIDVFGFYESQEIMLIFVNFYRSGTLINQQEFALDIK--TSKENFINEFLNEFYSK 280

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P+ ++         L +      +  K  +   K      +I+ A  NA     +KL
Sbjct: 281 NPLPDEVV---------LDDKFASFNFDVKEIMVFAKTKMYLSLIDLANKNAQNDQQRKL 331

Query: 357 ST--EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCS-AVGCMVVVGENGFVKNQYR 413
                  ++           L    +RI ++DNS   G   A+G  V        KN YR
Sbjct: 332 ENFLSQKNKAYKTHLKLGDYLEKTCRRIILFDNSFSKGTDVAIGVGVCFENGEANKNLYR 391

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
            FNL  ++ +  D   M +                           +    DV++ DG  
Sbjct: 392 YFNLFIDNFRHADVEYMRQ-------------------TSLNYLKEWSEGVDVILADGDI 432

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q+ A +     LN+   I I  + K  K          ++G+ +V+N  D + +++ R+
Sbjct: 433 AQIKAIRKSQNALNL--NIPIFGLVKNDKHETR--TLINEEGKEIVVNDLD-VFHYLSRM 487

Query: 534 RDEAHRFAI-TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           + E  RFA    HRK  K    S L +I G+GP     L++ FG+   I  +S E L  I
Sbjct: 488 QQEVDRFAKWAYHRKNTKNMLNSKLLKIKGLGPHTLTKLIEHFGSYTKIRNASLEELEKI 547

Query: 593 EGISKKIACKIYNHFH 608
             + K+IA  I    +
Sbjct: 548 --VKKEIALAIKEQLN 561


>gi|284799954|ref|ZP_06390446.1| excinuclease ABC subunit C [Neisseria subflava NJ9703]
 gi|284796449|gb|EFC51796.1| excinuclease ABC subunit C [Neisseria subflava NJ9703]
          Length = 399

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 129/414 (31%), Positives = 203/414 (49%), Gaps = 26/414 (6%)

Query: 206 MNQATLKEDYESAIIHRDR------LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTC 259
           M  A     +E A  +RD+      + +   I + N +  N +D  +L  +  L C+   
Sbjct: 1   MQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLALAVSDGLVCVHWV 60

Query: 260 FFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317
               G++ G  +FF  T ++           F+ Q Y  K  P+  ++        +L+ 
Sbjct: 61  SIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHYLGKSKPD--IIISNFPVPDVLKE 118

Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH 377
           +   ++G +++      GE++  ++ A  NA  +  Q+   + S Q  + +  K   +  
Sbjct: 119 ALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSSQQHRIDELAKILGMDS 178

Query: 378 IP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436
               R+E +D SH  G + +   VV  E     +QYR++N+        DD A MR VL 
Sbjct: 179 DSLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITTAK--PGDDYAAMREVLT 236

Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496
           RR+ ++ + E N              WPDVV++DGGKGQ+  A  V ++L +   I ++ 
Sbjct: 237 RRYGKMQEAEANGES---------VKWPDVVLIDGGKGQIGVAVSVWEELGLH--IPLVG 285

Query: 497 IAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-Y 554
           IAKGP+R AGME+  +   GE   L    P L+ +Q +RDE+HRFAIT HRK+R KA   
Sbjct: 286 IAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQTVRDESHRFAITGHRKKRDKARVT 345

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           S L EI GIG  R++ LL  FG ++ +  +S E L  +EGISK +A  IY H H
Sbjct: 346 SSLSEIPGIGSKRRQALLTRFGGLRGVIAASREDLEKVEGISKALAETIYEHLH 399


>gi|148509168|gb|ABQ81806.1| excinuclease ABC subunit C [Pseudomonas alkylphenolia]
          Length = 343

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 177/312 (56%), Gaps = 6/312 (1%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+KR+ SY        +   ++++I  +  T+T  E E
Sbjct: 17  RPGVYRMFDGEARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVARIAQVETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +  ++G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-PFPRLGIHRGAKKLKGKYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TFF+R C DS + +RTRPCL +QIKRC  PC G +  E+Y   V  + 
Sbjct: 136 GAIRESLSLLQKTFFVRQCEDSYYSNRTRPCLQYQIKRCKAPCVGLVEPEEYAVDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFS 246
            FL G +H L  ++   M QA +  ++E A   RD++A L  +Q+          +D  +
Sbjct: 196 MFLEGRSHQLTNELNAEMEQAAMALEFEKAAELRDQIALLRRVQDQQSMEGGSGDVDVIA 255

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---TDKPCPENI 303
            + N   AC+       G+  G+  FF +   E   A++++ FL Q+Y    ++  P  +
Sbjct: 256 AFTNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLSQYYIGNAERDLPGEL 315

Query: 304 LLSEEAEETSLL 315
           +++   E+ +  
Sbjct: 316 IVNVVHEDFAAF 327


>gi|269214909|ref|ZP_06158905.1| excinuclease ABC subunit C [Neisseria lactamica ATCC 23970]
 gi|269208751|gb|EEZ75206.1| excinuclease ABC subunit C [Neisseria lactamica ATCC 23970]
          Length = 399

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 127/414 (30%), Positives = 202/414 (48%), Gaps = 26/414 (6%)

Query: 206 MNQATLKEDYESAIIHRDR------LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTC 259
           M  A     +E A  +RD+      + +   I + N +  N +D  +L  +  L C+   
Sbjct: 1   MQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLALAVSDGLVCVHWV 60

Query: 260 FFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317
               G++ G  +FF  T ++           F+ Q Y  K  P+  ++         L+ 
Sbjct: 61  SIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHYLGKSKPD--IIISNFPVPDALKE 118

Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH 377
           +   ++G +++      GE++  ++ A  NA  +  Q+   + + Q  + +  K   +  
Sbjct: 119 ALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSNRQHRIDELAKILNMNS 178

Query: 378 IP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436
               R+E +D SH  G + +   VV  E     +QYR++N+        DD A MR VL 
Sbjct: 179 DDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITTAK--PGDDYAAMREVLT 236

Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496
           RR+ ++ + E N              WPDVV++DGGKGQ+  A  V ++L +   I ++ 
Sbjct: 237 RRYGKMQEAEANGET---------VKWPDVVLIDGGKGQIGVAVSVWEELGLH--IPLVG 285

Query: 497 IAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-Y 554
           IAKGP+R AGME+  +   GE   L    P L+ +Q +RDE+HRFAIT HRK+R KA   
Sbjct: 286 IAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQTVRDESHRFAITGHRKKRDKARVT 345

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           S L +I GIG  R++ LL  FG ++ +  +  E L  +EGISK +A  IYNH H
Sbjct: 346 SSLSDIPGIGSKRRQALLTRFGGLRGVIAAGKEDLEQVEGISKALAETIYNHLH 399


>gi|302550647|ref|ZP_07302989.1| excinuclease ABC, C subunit [Streptomyces viridochromogenes DSM
           40736]
 gi|302468265|gb|EFL31358.1| excinuclease ABC, C subunit [Streptomyces viridochromogenes DSM
           40736]
          Length = 496

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 114/455 (25%), Positives = 201/455 (44%), Gaps = 50/455 (10%)

Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSL 247
           ++G  +    ++ + M++A    +YE A   RD + AL      N  +       D  ++
Sbjct: 1   MTGRTNTYIRRLEKQMSEAAEAMEYERAARLRDDIEALKKAMEKNAVVLADATDADLIAV 60

Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP---CPENIL 304
             ++  A +Q      G+ RG   +      E T   ++ + L+Q Y ++     P+ +L
Sbjct: 61  AEDELEAAVQIFHVRGGRVRGQRGWVTDKVEEITTGALVEHALQQLYGEESGDAVPKEVL 120

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS--- 361
           +    +    ++     + G  V + VP++G+K+ ++E    NA ++     +   S   
Sbjct: 121 VPALPDPVEPVQEWLAGRRGSGVSLRVPQRGDKKALMETVQRNAQQALVLHKTKRASDLT 180

Query: 362 -HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
                L++      L   P R+E YD SH+ G   V  MVV  +    K++YR+F +   
Sbjct: 181 TRSRALEEIADALDLDSAPLRVECYDISHLQGDDVVASMVVFEDGLARKSEYRRFQIKG- 239

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEE-------------------------------NL 449
               QDD   M  V+ RRF + +  +E                               N 
Sbjct: 240 -FAGQDDVRSMHEVITRRFRRYLAEKEKTGEWMDGEEAENGANGEHAEHAESPLAGAANT 298

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                 +   F   P +V++DGG  Q++AA+  L  L +++ I +  +AK  +     E 
Sbjct: 299 LTEDDGRPKKFAYPPQLVVVDGGAPQVAAARRALDDLGIDD-IAVCGLAKRLE-----EV 352

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRK 568
           +     + +VL      LY +QR+RDEAHRFAIT  R +R K    SPLD++ G+G  RK
Sbjct: 353 WLPGDDDPVVLPRTSEGLYLLQRIRDEAHRFAITYQRTKRSKRFRSSPLDDVPGLGDTRK 412

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + LL+ FG++K +  ++ + +  + GI +K A  I
Sbjct: 413 QALLKHFGSLKKLRSATIDQICEVPGIGRKTAETI 447


>gi|288575939|ref|ZP_06394064.1| excinuclease ABC subunit C [Neisseria mucosa ATCC 25996]
 gi|288566609|gb|EFC88169.1| excinuclease ABC subunit C [Neisseria mucosa ATCC 25996]
          Length = 399

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 127/414 (30%), Positives = 202/414 (48%), Gaps = 26/414 (6%)

Query: 206 MNQATLKEDYESAIIHRDR------LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTC 259
           M  A     +E A  +RD+      + +   I + N +  N +D  +L  +  L C+   
Sbjct: 1   MQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLALAVSDGLVCVHWV 60

Query: 260 FFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317
               G++ G  +FF  T ++           F+ Q Y  K  P+  ++         L+ 
Sbjct: 61  SIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHYLGKSKPD--IIISNFPVPDALKE 118

Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH 377
           +   ++G +++      GE++  ++ A  NA  +  Q+   + S Q  + +  K   +  
Sbjct: 119 ALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSSQQHRIDELAKILNMNS 178

Query: 378 IP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436
               R+E +D SH  G + +   VV  E     +QYR++N+        DD A MR VL 
Sbjct: 179 DDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITTAK--PGDDYAAMREVLT 236

Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496
           RR+ ++ + E N              WPDVV++DGGKGQ+  A  V ++L +   I ++ 
Sbjct: 237 RRYGKMQEAEANGEA---------VKWPDVVLIDGGKGQIGVAISVWEELGLH--IPLVG 285

Query: 497 IAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-Y 554
           IAKGP+R AGME+  +   GE   L    P L+ +Q +RDE+HRFAIT HRK+R KA   
Sbjct: 286 IAKGPERKAGMEELILPFTGETFRLPPNSPALHLLQTVRDESHRFAITGHRKKRDKARVT 345

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           S L +I G+G  R++ LL  FG ++ +  +S E L  +EGISK +A  IY H H
Sbjct: 346 SSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQVEGISKALAETIYEHLH 399


>gi|291320448|ref|YP_003515712.1| UvrABC system protein C [Mycoplasma agalactiae]
 gi|290752783|emb|CBH40758.1| UvrABC system protein C [Mycoplasma agalactiae]
          Length = 571

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 143/613 (23%), Positives = 239/613 (38%), Gaps = 61/613 (9%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  +     PGVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +   
Sbjct: 8   LKLKNTSTSPGVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +  T  EALLLE  M+ R  P FNILL DD+ +PY+ +        +   R ++     
Sbjct: 68  YICKTNKEALLLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKANAKDTK 127

Query: 121 ---YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              Y+GPF S    +  +                        L  +    +G       S
Sbjct: 128 NTFYYGPFPSGYGAKPILKL----------------------LQHEALYENGLLIKNKDS 165

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             ++    + K+ LS  N+N    +   M+ A     +E A+  RD L  L  ++     
Sbjct: 166 NFWVNQFTKIKEILSFKNNNYLNDLTNKMHTAANNMQFELALFLRDGLTYLKKLKESQII 225

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             ++    D F+   ++ L      F+ +G         L      +  + +  F  QFY
Sbjct: 226 ELSQYKNIDVFAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFY 283

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            DK  P+N ++ EE  +  L   S +K    K+             +       H     
Sbjct: 284 ADKILPDNFIVQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQN 343

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           +L    S    L  +     L      I I+DNS++   + VG  +V       K+ YRK
Sbjct: 344 QLEKADSMLSSLNKYLNLPKLK----NIVIFDNSNVNNINPVGVAIVYTNGIKNKSLYRK 399

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           FNL     ++  D   +R  + + FS    +++                 D++I DGG  
Sbjct: 400 FNLEALSYRS-ADVDYIRQSITKFFSSDKNSKDF----------------DLIITDGGLQ 442

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRL 533
           Q++ A+  LK L +   I +I + K                  + +   D  L+ ++ ++
Sbjct: 443 QVNEAKKTLKFLGL--NIPVIGLVKNEHHKTRA--LIDLNLNEIYV--NDLELHNYLAQI 496

Query: 534 RDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           + E  RFA +  R R+K  +    L  I G+G   ++ LL  F +   I  +S E LA I
Sbjct: 497 QIEVDRFAKSHFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYAKIYDASVEELAKI 556

Query: 593 EGISKKIACKIYN 605
             I+  IA  I N
Sbjct: 557 VPIN--IAKSIKN 567


>gi|220903857|ref|YP_002479169.1| excinuclease ABC subunit C [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868156|gb|ACL48491.1| excinuclease ABC, C subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 687

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 96/316 (30%), Positives = 152/316 (48%), Gaps = 3/316 (0%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY   D  GR++YVGKA  L++R+ SY  +     +   M+S   +I +  T 
Sbjct: 8   SIPLSPGVYLYKDERGRIIYVGKARILRRRVLSYFRAEGLPTKTKAMLSHAGSIEYLTTT 67

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE+++IK+ +PR+NI+LRDDK +    +  KH  P L   R +      YFGP
Sbjct: 68  TEKEALLLESSLIKKHRPRYNIVLRDDKQYVLFRLNPKHPFPRLEVVRQARRDGARYFGP 127

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  +  +T   + R F LR C+D   ++R R CL   + +C  PC   ++ ++Y E V
Sbjct: 128 FTSALSARETWKLIHRAFALRRCSDRAMKNRVRACLYHFMGQCPAPCMDLVTPQQYNENV 187

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241
            +    L G    L + +   M QA+   ++E A + RD++ A+        ++      
Sbjct: 188 RKVCDLLQGRAAPLLDSLREAMEQASEDLEFEKAAVLRDQIRAVERTVERQAAVLPGGGD 247

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
           MD   LY  +    +   F   G       F+    +     ++L  F+ Q+Y+    P 
Sbjct: 248 MDAVGLYQAEKGLALGIVFVRGGAVTDGRAFYWPGLTFEDAPELLWSFVSQYYSQITPPP 307

Query: 302 NILLSEEAEETSLLEI 317
            ILL     +T  +E 
Sbjct: 308 RILLPWLPPDTERVED 323



 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/320 (28%), Positives = 131/320 (40%), Gaps = 34/320 (10%)

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  +L S       LLE +   +    V+I  P+     ++++ A  NA      +  
Sbjct: 388 SVPAAVLSSAPLTGRELLEQTLADRRDGAVRIVPPQHAGDNQLVDMAQSNARE--EARRQ 445

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            + S   IL    +   L   P RIE  D SH  G      MVV  +    + QYR +++
Sbjct: 446 EQKSEMNILDRLARALHLSGPPSRIECVDVSHTGGRQTRVGMVVFEDGQPARPQYRTYSM 505

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
                 + DD A +   + RR                    S P WPD++++DGG+GQL 
Sbjct: 506 PD----SGDDYATLYAWVARRL------------------ESGPPWPDLLLIDGGRGQLR 543

Query: 478 AAQGVLKKLNVENRITIISIAKG------PKRSAGM---EKFFVKKGEALVLNMRDPILY 528
             Q  L++    +   + +IAK         R AG      F   +  AL L      L 
Sbjct: 544 TIQRALEEAGQPDLFALAAIAKARDEQGHADRRAGNVADRIFVPNRANALPLREGGQELL 603

Query: 529 FIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           F+Q +RD  HRFAI  HRK RR  A    L  + G+GP   RLL   FG+V+ +  ++ E
Sbjct: 604 FLQNIRDTTHRFAIGRHRKARRGAALAGELMRLPGVGPATARLLWDHFGSVEAMCAATQE 663

Query: 588 TLASIEGISKKIACKIYNHF 607
            L  I GI    A  +    
Sbjct: 664 DLRKIPGIGPAKASMLLEKL 683


>gi|332295060|ref|YP_004436983.1| excinuclease ABC, C subunit [Thermodesulfobium narugense DSM 14796]
 gi|332178163|gb|AEE13852.1| excinuclease ABC, C subunit [Thermodesulfobium narugense DSM 14796]
          Length = 547

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 143/559 (25%), Positives = 236/559 (42%), Gaps = 45/559 (8%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           ++ E +PE PGVY       + LYVGKA NL  R+++Y+ S +H  +   M+S+ + + F
Sbjct: 7   LNLEDIPELPGVYMFFSKEKKPLYVGKAINLLNRLRNYLKSKSHDQKTALMLSEASYLDF 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST--IQ 118
            +   E EAL+LE  +IK   P++N+ LRD+KS+PYI I      PAL   R        
Sbjct: 67  IIVRNEYEALILEMTLIKEKVPKYNVQLRDNKSYPYIKIDFNEDFPALELFRGKPRGEKN 126

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             Y GP+     +   +  +     LR C+ S F++    C+ +Q+K+C  PC G  + E
Sbjct: 127 VLYIGPYPDGSNLRSLLRYINNVLPLRKCSKSTFKNAKSFCIRYQMKQCLAPCVGLANKE 186

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y + +  AK +LSG    +K+ + R + + + +E++E A   RD L+ +    +     
Sbjct: 187 EYKKMLMIAKDWLSGDLERVKKDLVREIERFSSEENFEQAARLRDSLSYIESFSDIKIID 246

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
                     +   L  I       G         +     +     + +FL  FY++  
Sbjct: 247 PQGKLNADAVYINKLGDISLVQVRHGLVSANIIKRMVNVEPANIHDAMLFFLYDFYSNIE 306

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQG--EKRKIIEQALINAHRSHTQKL 356
             + + ++   +E  L+E    +++G K KI V  +   +   + E+    A   + + L
Sbjct: 307 PGKIVFINVFLDEIDLIERFLEERWGKKRKIKVIDEEFLQGTDLSEKGKSKASAKYIEIL 366

Query: 357 STEISHQMILKDFTKKFALPHIPKRIE--------IYDNSHIMGCSAVGCMVVVGENGFV 408
                +           A       I           D +H  G + V  +    E G  
Sbjct: 367 KIAKENLFAKDKINVFRAGFERLSEIFERKISLAYALDIAHFQGEATVAGLSAADERGLR 426

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K  YR+  L  N   + DD A +   L+  F   I++                   D+++
Sbjct: 427 KRYYRRVRLTDN---SMDDYASIIQALKILFKSKIES-------------------DLLL 464

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGG GQL AA   LK    ++   +IS+AK        E  ++     L L   D  L 
Sbjct: 465 IDGGIGQLDAALKSLK----DSSSIVISLAKEE------EIIYLPDKRILRLPKNDYALR 514

Query: 529 FIQRLRDEAHRFAITTHRK 547
            +  LRDEAHRFA    RK
Sbjct: 515 ALMYLRDEAHRFANEY-RK 532


>gi|12045058|ref|NP_072868.1| excinuclease ABC, C subunit [Mycoplasma genitalium G37]
 gi|2507151|sp|P47448|UVRC_MYCGE RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|3844804|gb|AAC71424.1| excinuclease ABC, C subunit [Mycoplasma genitalium G37]
 gi|166078748|gb|ABY79366.1| excinuclease ABC, C subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 597

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 139/621 (22%), Positives = 253/621 (40%), Gaps = 41/621 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +  P+ PG Y   D  G+VLYVGKA N+  R+  Y   NN  ++   + SQI+++ F 
Sbjct: 8   KLKTAPKKPGCYLWKDSNGKVLYVGKASNIFNRVHQYFQKNN-PYKTQLLSSQISDVDFF 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E +AL LEA +I + +PRFN++L+ +  + Y  IT   K P L   R         
Sbjct: 67  ILKDENDALNLEAKLINQYQPRFNLVLKQNNGYLYFYITKAKK-PTLELARKYQIKTTKC 125

Query: 122 FGPFASVD-AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           FGPFAS    + +  + L + F LR CA      +  PC  FQ+  C G C    + EKY
Sbjct: 126 FGPFASSKFKLREIHDLLLKLFPLRKCAPHQ---KNHPCFYFQMGLCMGQCMQTDTKEKY 182

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIH---RDRLAALSHIQNHNDS 237
            + +   ++F +  +  +   +     +A+  +++E A      +  +  L+   +    
Sbjct: 183 QQVISNIEQFFNDPSVVI-NYLKAAEKKASDNQEFEKAQQFLTLQKAVLELTKTHHTTII 241

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLR---QFY 294
                  F  Y  +N     T F +           + T  ++   ++ S  +      Y
Sbjct: 242 KQKSSHDFIGYVFQNNVLAITIFCYEKGELTDKEQAVFTLEQTDIVEVESAIITFIYHHY 301

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
              P P  I +S +     L+  S             PK G ++ I++  + NA  +   
Sbjct: 302 KTTPLPSKITVSLDETNLKLISDSLKIGVFK------PKNGNEKLILQTVIDNAKHALAT 355

Query: 355 KLSTEISHQMILKDFTKKFAL--PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
           K     S+    +       L        +EI D S       VGCM+   +   +K+  
Sbjct: 356 KWLKFTSNYDKTQLHKDLAQLLNTDYIHSLEIIDVSFYDQNHVVGCMLRFEDGKKIKHLS 415

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           R++N++       +  A++       + +++            Q  +   + D++I+DGG
Sbjct: 416 RRYNINSLKKGDTNHIALL------VYRRIL---------SAMQTKANLPFSDLLIIDGG 460

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
           K Q+ + + V    +      II + K        +   +   +   + +  P+ +++  
Sbjct: 461 KAQIKSVKQVFSLFSNVKPPIIIGLVKNKNHQT--DHIMLSDFQVKKIAINSPLFHYLAT 518

Query: 533 LRDEAHRFAI-TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++ E   FA  +   K       +PL +I G+G +  ++L  +F T+  I  +S   L+ 
Sbjct: 519 IQTEVDGFAKRSAFNKLSNHQLQNPLLQIPGVGKITAQILFDNFQTLNNIKLASVNELSQ 578

Query: 592 IEGISKKIACKIYNHFHKNTS 612
              I K +A KI  +F K T 
Sbjct: 579 F--IKKPLAQKIKTYFAKQTD 597


>gi|255065949|ref|ZP_05317804.1| excinuclease ABC subunit C [Neisseria sicca ATCC 29256]
 gi|255049860|gb|EET45324.1| excinuclease ABC subunit C [Neisseria sicca ATCC 29256]
          Length = 399

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 127/414 (30%), Positives = 203/414 (49%), Gaps = 26/414 (6%)

Query: 206 MNQATLKEDYESAIIHRDR------LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTC 259
           M  A +   +E A  +RD+      + +   I + N +  N +D  +L  +  L C+   
Sbjct: 1   MQTAAVNLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLALAVSDGLVCVHWV 60

Query: 260 FFHFGQNRGTCTFFLKTDSESTN--AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317
               G++ G  +FF  T ++           F+ Q Y  K  P+  ++         L+ 
Sbjct: 61  SIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHYLGKSKPD--IIISNFPVPDALKE 118

Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH 377
           +   ++G +++      GE++  ++ A  NA  +  Q+   + S Q  + +  K   +  
Sbjct: 119 ALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSSQQHRIDELAKILNMNS 178

Query: 378 IP-KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436
               R+E +D SH  G + +   VV  E     +QYR++N+        DD A MR VL 
Sbjct: 179 DDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITTAK--PGDDYAAMREVLT 236

Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIIS 496
           RR+ ++ + E N              WPDVV++DGGKGQ+  A  V ++L +   I ++ 
Sbjct: 237 RRYGKMQEAEANGEA---------VKWPDVVLIDGGKGQIGVAVSVWEELGLH--IPLVG 285

Query: 497 IAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-Y 554
           IAKGP+R AGME+  +   GE   L    P L+ +Q +RDE+HRFAIT HRK+R KA   
Sbjct: 286 IAKGPERKAGMEELILPFTGETFRLPHNSPALHLLQTVRDESHRFAITGHRKKRDKARVT 345

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           S L +I G+G  R++ LL  FG ++ +  +S E L  +EGISK +A  IY H H
Sbjct: 346 SSLSDIPGVGSKRRQALLTRFGGLRGVVAASKEDLEQVEGISKALAETIYEHLH 399


>gi|110642025|ref|YP_669755.1| UvrC excinuclease ABC subunit C [Escherichia coli 536]
 gi|110343617|gb|ABG69854.1| UvrC excinuclease ABC subunit C [Escherichia coli 536]
          Length = 441

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 129/436 (29%), Positives = 219/436 (50%), Gaps = 29/436 (6%)

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +        
Sbjct: 19  YAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSN 78

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD- 296
             + +D   +  +  +AC+   F   G+  G+ ++F K    +  ++++  F+ QFY   
Sbjct: 79  TGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQG 138

Query: 297 ---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
              +  P  ILL     + +LL  S  +  G K+ +    +G++ + ++ A  NA  + T
Sbjct: 139 SQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALT 198

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            KLS + +    L        LP +  R+E +D SH MG   V   VV   NG ++ +YR
Sbjct: 199 SKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYR 257

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+    +   DD A M  VL RR+ + I + +                PDV+++DGGK
Sbjct: 258 RYNI--TGITPGDDYAAMNQVLRRRYGKAIDDSK---------------IPDVILIDGGK 300

Query: 474 GQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYF 529
           GQL+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +GE   L    P L+ 
Sbjct: 301 GQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHV 360

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           IQ +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E 
Sbjct: 361 IQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEE 420

Query: 589 LASIEGISKKIACKIY 604
           +A + GIS+ +A KI+
Sbjct: 421 IAKVPGISQGLAEKIF 436


>gi|195953619|ref|YP_002121909.1| excinuclease ABC, C subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|254764936|sp|B4U9X0|UVRC_HYDS0 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|195933231|gb|ACG57931.1| excinuclease ABC, C subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 565

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 158/605 (26%), Positives = 259/605 (42%), Gaps = 51/605 (8%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E+ PE PGVY   +     +Y+GKA N++KR+  ++     + +  ++ +    + + VT
Sbjct: 8   EKAPEEPGVYIFKNQK-HYIYIGKAINIKKRLLQHLKEREQSKKEANIFNHSKELEWIVT 66

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             E EALLLE ++I+  KP++N+LL+    +P IL+TD    P +   RD+S      FG
Sbjct: 67  RNEYEALLLEMDLIRTHKPKYNVLLKHGSGYPVILLTDDE-YPTVKITRDTSEKG-EAFG 124

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PF +++   K    +  TF LR+C +     R  PC+ + +  CSGPC   IS E Y   
Sbjct: 125 PFLNINKALKIKKLIHATFRLRTCEEMP--KRPTPCMDYHLGLCSGPCANLISKEDYAIS 182

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           V  AK FLSG   ++   +   + Q      +E A   RD++  L +I +        ++
Sbjct: 183 VKSAKAFLSGNVKDVLPTLYEKIEQYASNLAFEKAAFLRDQVLVLQNIVDGQGVFLYDIE 242

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
              +++ +  +      + F           +              L  +Y     P+ I
Sbjct: 243 EVDVFYLEGYS-----LWLFIIRNKRLVAHKEFRLNKELIINYEEMLGTYYMSNIVPKKI 297

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQ 363
           + + E  E   L I   ++               + +++    N       K        
Sbjct: 298 VANFELTENFRLFIKSKRKDVAFSNNI------PKPLLKIIEKNVVLKPDTKEFESE--- 348

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
                   K      PK IE +D SH  G   VG MVV  +    K++YR++ +    V 
Sbjct: 349 ------FYKLFGRKAPKLIECFDISHFQGQYTVGSMVVWEDGSLNKSKYRRYRIKT--VD 400

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A ++ VL RR  +++  E+                PD+ ++DGGKGQLS    V 
Sbjct: 401 YIDDFASLKEVLSRRAKRIVSKEDQT--------------PDMWLIDGGKGQLSMGIEVK 446

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           +K  +   I I S+AK        E  + + G  + +     +      LRDEAHRFAIT
Sbjct: 447 EKFLL--NIYICSLAKKE------EIIYTEDGLEIPIKNHQALYRVFGLLRDEAHRFAIT 498

Query: 544 THRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            +R  R K      L +I G+G ++K ++ + F ++    +S  E L  + GISK I   
Sbjct: 499 YNRNLRSKEFIKDTLSKIKGVGKVKKEIIYRHFDSLYDFIKSDDEKLKKL-GISKSIKES 557

Query: 603 IYNHF 607
           +    
Sbjct: 558 VKKIL 562


>gi|254227057|ref|ZP_04920614.1| UvrABC system protein C [Vibrio cholerae V51]
 gi|125620408|gb|EAZ48785.1| UvrABC system protein C [Vibrio cholerae V51]
          Length = 370

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 125/358 (34%), Positives = 195/358 (54%), Gaps = 10/358 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TV
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGTKKRRGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS E Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDEGYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E VH  + FL G ++ +   +   M QA+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD-- 296
              +D         +ACI       G+  G+ + F K  S+++  ++   FL Q+Y    
Sbjct: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309

Query: 297 --KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
             +  P  I+L+    EET  L+ +  +  G KV   V   G + + ++ A  NA  +
Sbjct: 310 EARSIPARIILNRGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTA 367


>gi|121535497|ref|ZP_01667306.1| Excinuclease ABC, C subunit domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305916|gb|EAX46849.1| Excinuclease ABC, C subunit domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 309

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/272 (35%), Positives = 154/272 (56%), Gaps = 6/272 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +P+ PGVY M D   R++YVGKA NL+ R++SY  ++ NH+ ++  M+++I ++ + VT
Sbjct: 20  HLPDKPGVYLMKDANKRIIYVGKAVNLKNRVRSYFQASRNHSPKVRAMVARIADLEYIVT 79

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EAL+LE N+IK+ +P++NI L+DDKS+PYI +T     P +Y  R        YFG
Sbjct: 80  ASEIEALILECNLIKKHRPKYNISLKDDKSYPYIKVTVNEAYPRVYATRKVQKDGARYFG 139

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P+ S  AV +T+  L++ F LRSC     R   RPCL   IKRC  PC+G +  ++Y   
Sbjct: 140 PYTSAGAVHETLALLRKLFPLRSCRRLDER---RPCLQHHIKRCLAPCSGRVDEDQYRSM 196

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNR 241
           +     FL G + ++ +++ R M +A    ++E A   RD+LAA+  ++   + +     
Sbjct: 197 IKAVCLFLEGRSDDVVKELRRRMEEAAENLEFEQAAQLRDQLAAVEKVREKQNIVTGSGD 256

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFF 273
            D   L  +    C+Q  F   G+  G   F 
Sbjct: 257 QDVIGLARSAVGTCVQVFFIRSGKMVGRDHFP 288


>gi|260186360|ref|ZP_05763834.1| excinuclease ABC subunit C [Mycobacterium tuberculosis CPHL_A]
          Length = 427

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/431 (25%), Positives = 195/431 (45%), Gaps = 30/431 (6%)

Query: 208 QATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---MDCFSLYHNKNLACIQTCFFHFG 264
            A  + D+E A   RD L+AL         +       D  +   ++  A +Q      G
Sbjct: 1   AAAEQLDFERAARLRDDLSALKRAMEKQAVVLGDGTDADVVAFADDELEAAVQVFHVRGG 60

Query: 265 QNRGTCTFFLKTDSE--STNAQILSYFLRQFY------------TDKPCPENILLSEEAE 310
           + RG   + ++   E   +  Q++  FL QFY            +  P P  +L+     
Sbjct: 61  RVRGQRGWIVEKPGEPGDSGIQLVEQFLTQFYGDQAALDDAADESANPVPREVLVPCLPS 120

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI----L 366
               L        G +V + VP++G+KR + E    NA  +  Q      S        L
Sbjct: 121 NAEELASWLSGLRGSRVVLRVPRRGDKRALAETVHRNAEDALQQHKLKRASDFNARSAAL 180

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ- 425
           +       L   P RIE  D SH+ G   VG +VV  +    K+ YR F +     + + 
Sbjct: 181 QSIQDSLGLADAPLRIECVDVSHVQGTDVVGSLVVFEDGLPRKSDYRHFGIREAAGQGRS 240

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNF-HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
           DD A +  V  RRF + ++++ + +   P+++   F   P++ ++DGG  Q++AA  V+ 
Sbjct: 241 DDVACIAEVTRRRFLRHLRDQSDPDLLSPERKSRRFAYPPNLYVVDGGAPQVNAASAVID 300

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L V + + +I +AK  +     E +   + + +++      LY +QR+RDEAHRFAIT 
Sbjct: 301 ELGVTD-VAVIGLAKRLE-----EVWVPSEPDPIIMPRNSEGLYLLQRVRDEAHRFAITY 354

Query: 545 HRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR +R  +   S LD + G+G  R++ L+  FG++  +  ++ + + ++ GI    A  +
Sbjct: 355 HRSKRSTRMTASALDSVPGLGEHRRKALVTHFGSIARLKEATVDEITAVPGIGVATATAV 414

Query: 604 YNHFHKNTSHT 614
           ++    ++S  
Sbjct: 415 HDALRPDSSGA 425


>gi|330815995|ref|YP_004359700.1| excinuclease ABC subunit C [Burkholderia gladioli BSR3]
 gi|327368388|gb|AEA59744.1| excinuclease ABC subunit C [Burkholderia gladioli BSR3]
          Length = 747

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 158/277 (57%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA NL+KR+ SY +    + RI  M+++I  I  TVT 
Sbjct: 37  QLPHLPGVYRYYDAGGAVLYVGKARNLKKRVSSYFNKTQLSPRIAMMVTRIRKIETTVTR 96

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H  P +  +R +   +  YFGP
Sbjct: 97  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHAFPRMAYYRGAVDRKNQYFGP 155

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G I +E Y   V
Sbjct: 156 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGAIEAEDYARDV 215

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G  + + +++ + M+    +  +E A   R+++++LS + +           
Sbjct: 216 SNASRFLLGRQNEVMKELEQKMHAFAAELKFEQAAAVRNQMSSLSTVLHQQAIEVGSESD 275

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
            D  ++  +    C+       G++ G   +F     
Sbjct: 276 VDILAVVAHGGRVCVNLAMVRGGRHLGDKAYFPAHAD 312



 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 165/341 (48%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVLRQPQGQKRAWL 469

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +   +            RIE +D SH MG +    
Sbjct: 470 SMAEQNARLALARLLSEQGSQQARTRALAEVLGFEAEDLAQLRIECFDISHTMGEATQAS 529

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP----- 453
            VV   +     +YR++N+    +   DD A MR VL RR+ ++++              
Sbjct: 530 CVVFHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVEQAAETAAADAAAGI 587

Query: 454 ----KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                +   +    P++V++DGGKGQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 588 DGDATRASATAALLPNIVLIDGGKGQVEVARQVFTELGLDVSM-LVGVAKGEGRKVGLET 646

Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 647 LVFVDGRPPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S E LAS+EGIS  +A +IY   H
Sbjct: 707 RQRLLARFGGLRGVVAASVEELASVEGISHALAEQIYRQLH 747


>gi|238026626|ref|YP_002910857.1| excinuclease ABC subunit C [Burkholderia glumae BGR1]
 gi|237875820|gb|ACR28153.1| UvrABC system protein C (Protein uvrC) [Burkholderia glumae BGR1]
          Length = 756

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 156/273 (57%), Gaps = 4/273 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D AG VLYVGKA NL+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 37  QLPHLPGVYRYYDAAGSVLYVGKARNLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 96

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H  P +  +R +   +  YFGP
Sbjct: 97  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHAFPRMAYYRGAVDRKNQYFGP 155

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I +  Y   V
Sbjct: 156 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIDAADYARDV 215

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++L+ + +           
Sbjct: 216 ANASRFLLGRQSEVMKELEQKMHGFAAELKFEQAAAVRNQMSSLATVLHQQAIEVGSESD 275

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL 274
            D  ++  +    C+       G++ G   +F 
Sbjct: 276 VDILAVVAHGGRVCVNLAMVRGGRHLGDKAYFP 308



 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 102/341 (29%), Positives = 167/341 (48%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 420 ETEVLEAFIAQHYLGNRVPPVLVVSHALANRELIDLLV-EQAGHKVAVLRQPQGQKRAWL 478

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +   +            RIE +D SH MG +    
Sbjct: 479 AMAEQNARLALARLLSEQGSQQARTRALAEVLGFEADDLAQLRIECFDISHTMGEATQAS 538

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN---------L 449
            VV   +     +YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 539 CVVFHHHKMQSGEYRRYNI--TGITPGDDYAAMRQVLMRRYEKMVEQAGEAAAADAQAGI 596

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           +    +   S    P++V++DGGKGQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 597 DGDATRASASAALLPNIVLIDGGKGQVEVARQVFTELGLDCSM-LVGVAKGEGRKVGLET 655

Query: 510 FFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 656 LIFADGRPSLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 715

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S E LAS+EGIS  +A +IY   H
Sbjct: 716 RQRLLARFGGLRGVVAASVEELASVEGISHALAEQIYRQLH 756


>gi|154505837|ref|ZP_02042575.1| hypothetical protein RUMGNA_03378 [Ruminococcus gnavus ATCC 29149]
 gi|153793855|gb|EDN76275.1| hypothetical protein RUMGNA_03378 [Ruminococcus gnavus ATCC 29149]
          Length = 374

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 109/348 (31%), Positives = 181/348 (52%), Gaps = 7/348 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGKA +L+ R++ Y  ++ N   +I  M++ I    +
Sbjct: 11  ELKKLPAKPGVYIMHDERDHIIYVGKAISLKNRVRQYFQTSRNKGVKIEQMVTHIRRFEY 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK   P++N +L DDK++P+I +T     P +   R     +  
Sbjct: 71  IVTDSELEALVLECNLIKEHHPKYNTMLMDDKTYPFIKVTVNEDFPRVMLARKMLKDKAK 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ S  AV  TI+ L + + +RSC  ++ +   + RPCL + IK+C  PC G IS E
Sbjct: 131 YFGPYTSGQAVRDTIDLLHKLYHVRSCNRNLPKDIGKERPCLNYHIKQCDAPCQGYISKE 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN--- 235
           +Y + + E  +FL+G    + + +   M +A+ +  +E AI +R+ L ++  I       
Sbjct: 191 EYGKAISEVIRFLNGNFDGILKDLEEKMQKASEELKFEKAIEYRELLGSVKKIAQKQKIT 250

Query: 236 DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
           DS     D  +    +  A +Q  F   G+  G   F+L+     T  +IL  F++Q+Y 
Sbjct: 251 DSSGEDRDILAAAIQEEDAVVQVFFIRGGRLIGRDHFYLRISKGETCGEILDSFIKQYYA 310

Query: 296 DKP-CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
             P  P  ++L EE E+ SLLE     + G K      K+  ++    
Sbjct: 311 GTPFIPGELMLQEEIEDASLLEEWLSVKRGGKSISACRKKARRKSWWN 358


>gi|330942152|gb|EGH44804.1| excinuclease ABC subunit C [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 379

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 194/386 (50%), Gaps = 22/386 (5%)

Query: 230 HIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289
             Q   D     +D  + + N   AC+       G+  G+  FF +   E    +++S F
Sbjct: 11  QDQQSMDGGTGDVDVVAAFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAF 70

Query: 290 LRQFYT---DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
           L Q++    D+  P  ++++   ++      +  +  G ++ I+   +G + +  + A+ 
Sbjct: 71  LAQYFLGGIDRELPGEVIVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVT 130

Query: 347 NAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENG 406
           NA ++ T +L+         +   K   L   P R+E YD SH  G + V   VV G  G
Sbjct: 131 NAEQALTARLANRQHVASRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEG 190

Query: 407 FVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDV 466
            +K+ YR+FN+    V   DD A M   L RR+S++   E  L              PDV
Sbjct: 191 PIKSDYRRFNIEG--VTAGDDYAAMHQALTRRYSRIKAGEGKL--------------PDV 234

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDP 525
           +++DGGKGQ+S A+ VL +L V + I ++ +AKG  R AG E  ++        L    P
Sbjct: 235 LLVDGGKGQMSMARDVLNELQVPDLI-LLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSP 293

Query: 526 ILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRS 584
            L+ IQ++RDEAHRFAIT HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+
Sbjct: 294 ALHLIQQIRDEAHRFAITGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRA 353

Query: 585 SPETLASIEGISKKIACKIYNHFHKN 610
           S + +A   GISKK+A  IY + H  
Sbjct: 354 SIDEIAKAPGISKKLAESIYANLHSE 379


>gi|293363261|ref|ZP_06610145.1| excinuclease ABC, C subunit [Mycoplasma alligatoris A21JP2]
 gi|292553120|gb|EFF41869.1| excinuclease ABC, C subunit [Mycoplasma alligatoris A21JP2]
          Length = 575

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 138/616 (22%), Positives = 238/616 (38%), Gaps = 67/616 (10%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PGVY   D    ++YVGKA  L+ R+  Y     ++H+   ++ QIN+    +T
Sbjct: 15  KSLPSEPGVYLWKDKNDAIIYVGKAKKLKNRMLQYFEGRLNSHKTNDLVKQINDFDIYIT 74

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI---QGS 120
            +E EAL+LE  +I++  P +NI L DDK +PYI I+   K+ ++   R          S
Sbjct: 75  KSEKEALILEKRLIEKYSPIYNIQLLDDKRYPYIKISLAKKL-SIKLDRKLIKDTENNTS 133

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF      ++    L+                            +G    +  ++ +
Sbjct: 134 YFGPFPHGFGAKQISQFLESELLYE----------------------NGLLIDKKDNDFW 171

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
                +A + LS  +  + +KI +    A    +YE A  + +       ++        
Sbjct: 172 FNQYQKAIEILSFKDKKIIDKINQKRLAAEDLLNYEQARDYLELSKYFLKLKETQQIELE 231

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
               +D        N   I   ++ +G      ++  K  S   +A  +S FL   Y  K
Sbjct: 232 KEKNIDVIDFIQKDNYLHITVLYYIYGVLINKDSWTFKIHSNVEDA--ISEFLNFLYNKK 289

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ ILL++    +  +     K       I  PK G K+ I+E A  N      QK S
Sbjct: 290 ALPDQILLTDNLLTSEFISEFQNK-------IFFPKIGAKKAILEIAHKNNLVYIEQKKS 342

Query: 358 T-EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF- 415
              + +   +        +    + I  +DNS +   + +G  +        K+ Y+KF 
Sbjct: 343 KLNLRNIEAITQLAALLNIE-KIQNIIAFDNSSMNNDAKLGVAIAYSNGQKNKSLYKKFD 401

Query: 416 -NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
            + +   +    D   M   + R F                   +  +  D+VI+DG   
Sbjct: 402 HSKYKEQLLFNSDDEFMYQNVLRYFKN-----------------NSFNVNDLVIIDGAIS 444

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           QL  A   L +LN+  +I IIS+ K  K             + + +  +D +  F+  ++
Sbjct: 445 QLKKAIKALNELNI--KINIISLVKDDKHKTSH--ILNSNFKKIEIVNKD-LYNFLASVQ 499

Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
            E  RFA    R +R  + +   + +I GIG   +  LL  F T   I  ++ E L  + 
Sbjct: 500 IEVDRFAKEYLRNKRITSTFEGSIAKIPGIGSKYETKLLNHFKTYSGILNATHEQLCKV- 558

Query: 594 GISKKIACKIYNHFHK 609
            + K I  KI      
Sbjct: 559 -VPKNICEKIMKTLKN 573


>gi|209517213|ref|ZP_03266058.1| excinuclease ABC, C subunit [Burkholderia sp. H160]
 gi|209502349|gb|EEA02360.1| excinuclease ABC, C subunit [Burkholderia sp. H160]
          Length = 731

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 110/277 (39%), Positives = 156/277 (56%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D +G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 21  QLPHLPGVYRYYDTSGTVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  HK P +  +R S   +  YFGP
Sbjct: 81  SEAEALLLENNLIKALTPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGSVDRKNQYFGP 139

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC   IS E Y   V
Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVANISEEDYARDV 199

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++LS + +           
Sbjct: 200 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 259

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
            D  ++       C+       G++ G   +F     
Sbjct: 260 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPTHVE 296



 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/350 (28%), Positives = 166/350 (47%), Gaps = 28/350 (8%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            A++L  F+ Q Y     P  +++S       +      +Q G+KV +    QG++R  +
Sbjct: 387 EAEVLEAFIAQHYLGNRVPPVLVVSHAPARELV--DVLTEQAGHKVTVLRQPQGQRRAWL 444

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +  T    +        R+E +D SH MG +    
Sbjct: 445 TMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRVECFDISHTMGEATQAS 504

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE----------- 447
            VV   +    ++YR++N+    +   DD A MR VL RR+ +++               
Sbjct: 505 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANASDEAAASQ 562

Query: 448 -------NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                  +L     +   +    P +V++DGGKGQ+  A+ V  +L ++  + ++ +AKG
Sbjct: 563 SDAAADPSLAADAAEPAAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 621

Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558
             R  G+E      G   L L      L  + ++RDEAHRFAIT  R +R K    S L+
Sbjct: 622 EGRKVGLETLIFADGRTPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 681

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS+ +A +IY   H
Sbjct: 682 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 731


>gi|148377764|ref|YP_001256640.1| UvrABC system protein C [Mycoplasma agalactiae PG2]
 gi|8134797|sp|O84899|UVRC_MYCAP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|3435084|gb|AAC32310.1| deoxyribodipyrimidine photolyase [Mycoplasma agalactiae PG2]
 gi|148291810|emb|CAL59200.1| UvrABC system protein C [Mycoplasma agalactiae PG2]
          Length = 571

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 145/613 (23%), Positives = 238/613 (38%), Gaps = 61/613 (9%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  +     PGVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +   
Sbjct: 8   LKLKNTSTSPGVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +  T  EALLLE  M+ R  P FNILL DD+ +PY+ +        +   R  +T    
Sbjct: 68  YICKTNKEALLLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTK 127

Query: 121 ---YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
              Y+GPF S    +  +  LQ      S                      G       S
Sbjct: 128 NTLYYGPFPSGYGAKPILKLLQHEALYES----------------------GLLIKNNDS 165

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             ++    + K+ LS  N+N   ++   M+ A     +E A+  RD L  L  ++     
Sbjct: 166 SFWVNQFAKIKEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQII 225

Query: 238 IYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
             ++    D F+   ++ L      F+ +G         L      +  + +  F  QFY
Sbjct: 226 ELSQYKNIDVFAYKTDEKLIYATVLFYRYGVLINKVN--LTIPLGISIDESIRVFFEQFY 283

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
            DK  P+N ++ EE  +  L   S +K    K+             +       H     
Sbjct: 284 ADKILPDNFIVQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQN 343

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
           +L    S    L  +     L      I I+DNS+I   + VG  +V       K+ YRK
Sbjct: 344 QLEKADSMLSSLNKYLNLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRK 399

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           FNL     ++  D   +R  + + FS     ++                 D++I DGG  
Sbjct: 400 FNLEALSYRS-ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQ 442

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRL 533
           Q++ A+  LK L +   I +I + K                  + +   D  L+ ++ ++
Sbjct: 443 QVNEAKKTLKVLGI--NIPVIGLVKNEYHKTRA--LIDLNLNEIYV--NDLELHNYLAQI 496

Query: 534 RDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           + E  RFA +  R R+K  +    L  I G+G   ++ LL  F +   I  +S E LA I
Sbjct: 497 QIEVDRFAKSHFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYAKIYDASVEELAKI 556

Query: 593 EGISKKIACKIYN 605
             +   +A  I N
Sbjct: 557 --VPFNVAKSIKN 567


>gi|238788411|ref|ZP_04632205.1| UvrABC system protein C [Yersinia frederiksenii ATCC 33641]
 gi|238723657|gb|EEQ15303.1| UvrABC system protein C [Yersinia frederiksenii ATCC 33641]
          Length = 432

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 132/440 (30%), Positives = 221/440 (50%), Gaps = 29/440 (6%)

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +        
Sbjct: 10  YQRQVDYVRLFLSGKDQQVLTQLISRMEEASQLLHFEDAARIRDQIQAVRRVTEQQFVSG 69

Query: 240 NRMD--CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--- 294
           +  D     +  +  LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY   
Sbjct: 70  DSEDLDVIGVAFDAGLACVHVLFIRQGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQG 129

Query: 295 -TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
              +  P  ILL     E  LL  S  +  G K++I    +G++ + ++ A  NA  +  
Sbjct: 130 SQGRTLPGEILLDFTLAEKDLLAASLSELAGRKIQIQSRPRGDRARYLKLARTNASTALV 189

Query: 354 QKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            +LS + +    +K+  K   L     R+E +D SH MG   V   VV   NG V+++YR
Sbjct: 190 TRLSQQSTIHERMKELAKILNLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSEYR 248

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N+  + +   DD A M  VL+RR+ + + +++                PDV+ +DGGK
Sbjct: 249 RYNI--SGITPGDDYAAMSQVLKRRYGKALDDKK---------------IPDVIFIDGGK 291

Query: 474 GQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPILYF 529
           GQLS A  V   LNV   + +  ++ +AKG  R AG+E  F+  +GE   L    P L+ 
Sbjct: 292 GQLSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLAAEGEGFSLPPDSPALHL 351

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           IQ +RD++H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S E 
Sbjct: 352 IQHIRDDSHHHAITGHRQRRSKVKNTSALEMIEGVGPKRRQILLKYMGGLQPLLNASVEE 411

Query: 589 LASIEGISKKIACKIYNHFH 608
           +A +  IS+ +A KIYN   
Sbjct: 412 IAKVPSISQALAEKIYNALK 431


>gi|170695432|ref|ZP_02886577.1| excinuclease ABC, C subunit [Burkholderia graminis C4D1M]
 gi|170139623|gb|EDT07806.1| excinuclease ABC, C subunit [Burkholderia graminis C4D1M]
          Length = 769

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 110/277 (39%), Positives = 156/277 (56%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 18  QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  HK P +  +R S   +  YFGP
Sbjct: 78  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGSVDRKNQYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G I+ E Y   V
Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGNINEEDYARDV 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++LS + +           
Sbjct: 197 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
            D  ++       C+       G++ G   +F     
Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293



 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 167/350 (47%), Gaps = 27/350 (7%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            +++L  F+ Q Y     P  +++S       L+     +Q G+KV +    QG++R  +
Sbjct: 424 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 482

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +       +        RIE +D SH MG +    
Sbjct: 483 AMAEQNARLALARLLSEQGSQQARTRALIDTLGMECDDLAHVRIECFDISHTMGEATQAS 542

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIK-------------- 444
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++              
Sbjct: 543 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVEQAAANAVDEATDLQ 600

Query: 445 ----NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
               +   L     +   S    P +V++DGGKGQ+  A+ V  +L ++  + ++ +AKG
Sbjct: 601 SDAADNPPLTQQAGEPVASGGILPSIVLIDGGKGQVEIARQVFAELGLDTGM-LVGVAKG 659

Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558
             R  G+E      G   L L      L  + ++RDEAHRFAIT  R +R K    S L+
Sbjct: 660 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 719

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS+ +A +IY   H
Sbjct: 720 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 769


>gi|323526849|ref|YP_004229002.1| excinuclease ABC subunit C [Burkholderia sp. CCGE1001]
 gi|323383851|gb|ADX55942.1| excinuclease ABC, C subunit [Burkholderia sp. CCGE1001]
          Length = 740

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 110/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 18  QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  HK P +  +R S   +  YFGP
Sbjct: 78  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGSVDRKNQYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC   IS E Y   V
Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVANISEEDYARDV 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++LS + +           
Sbjct: 197 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
            D  ++       C+       G++ G   +F     
Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 103/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            +++L  F+ Q Y     P  +++S       L+     +Q G+KV +    QG++R  +
Sbjct: 395 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 453

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +  T    +        RIE +D SH MG +    
Sbjct: 454 AMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHVRIECFDISHTMGEATQAS 513

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN------------- 445
            VV   +    ++YR++N+    +   DD A MR VL RR+ +++               
Sbjct: 514 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANASDEAVDLQ 571

Query: 446 -----EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                + +L     +   S    P +V++DGGKGQ+  A+ V  +L ++  + ++ +AKG
Sbjct: 572 SDAAVDPSLAPEAAEPVASGGILPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 630

Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558
             R  G+E      G   L L      L  + ++RDEAHRFAIT  R +R K    S L+
Sbjct: 631 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 690

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS+ +A +IY   H
Sbjct: 691 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 740


>gi|307730516|ref|YP_003907740.1| excinuclease ABC subunit C [Burkholderia sp. CCGE1003]
 gi|307585051|gb|ADN58449.1| excinuclease ABC, C subunit [Burkholderia sp. CCGE1003]
          Length = 743

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 108/277 (38%), Positives = 155/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  +  TVT 
Sbjct: 18  QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARVETTVTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  HK P +  +R +   +  YFGP
Sbjct: 78  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGAVDRKNQYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G I  E Y   V
Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVGNIGEEDYARDV 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++LS + +           
Sbjct: 197 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
            D  ++       C+       G++ G   +F     
Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293



 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            +++L  F+ Q Y     P  +++S       L+     +Q G+KV +    QG++R  +
Sbjct: 398 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 456

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +  T    +        RIE +D SH MG +    
Sbjct: 457 AMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHVRIECFDISHTMGEATQAS 516

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------------- 443
            VV   +    ++YR++N+    +   DD A MR VL RR+ +++               
Sbjct: 517 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANAADEAAELQ 574

Query: 444 ---KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                + +L     +   +    P +V++DGGKGQ+  A+ V  +L ++  + ++ +AKG
Sbjct: 575 SDAAADPSLTPEAAEPVAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 633

Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558
             R  G+E      G   L L      L  + ++RDEAHRFAIT  R +R K    S L+
Sbjct: 634 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 693

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS+ +A +IY   H
Sbjct: 694 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 743


>gi|289447017|ref|ZP_06436761.1| excinuclease ABC subunit C [Mycobacterium tuberculosis CPHL_A]
 gi|289419975|gb|EFD17176.1| excinuclease ABC subunit C [Mycobacterium tuberculosis CPHL_A]
          Length = 422

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 193/426 (45%), Gaps = 30/426 (7%)

Query: 213 EDYESAIIHRDRLAALSHIQNHNDSIYNR---MDCFSLYHNKNLACIQTCFFHFGQNRGT 269
            D+E A   RD L+AL         +       D  +   ++  A +Q      G+ RG 
Sbjct: 1   MDFERAARLRDDLSALKRAMEKQAVVLGDGTDADVVAFADDELEAAVQVFHVRGGRVRGQ 60

Query: 270 CTFFLKTDSE--STNAQILSYFLRQFY------------TDKPCPENILLSEEAEETSLL 315
             + ++   E   +  Q++  FL QFY            +  P P  +L+         L
Sbjct: 61  RGWIVEKPGEPGDSGIQLVEQFLTQFYGDQAALDDAADESANPVPREVLVPCLPSNAEEL 120

Query: 316 EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMI----LKDFTK 371
                   G +V + VP++G+KR + E    NA  +  Q      S        L+    
Sbjct: 121 ASWLSGLRGSRVVLRVPRRGDKRALAETVHRNAEDALQQHKLKRASDFNARSAALQSIQD 180

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAM 430
              L   P RIE  D SH+ G   VG +VV  +    K+ YR F +     + + DD A 
Sbjct: 181 SLGLADAPLRIECVDVSHVQGTDVVGSLVVFEDGLPRKSDYRHFGIREAAGQGRSDDVAC 240

Query: 431 MRMVLERRFSQLIKNEENLNF-HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
           +  V  RRF + ++++ + +   P+++   F   P++ ++DGG  Q++AA  V+ +L V 
Sbjct: 241 IAEVTRRRFLRHLRDQSDPDLLSPERKSRRFAYPPNLYVVDGGAPQVNAASAVIDELGVT 300

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549
           + + +I +AK  +     E +   + + +++      LY +QR+RDEAHRFAIT HR +R
Sbjct: 301 D-VAVIGLAKRLE-----EVWVPSEPDPIIMPRNSEGLYLLQRVRDEAHRFAITYHRSKR 354

Query: 550 K-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             +   S LD + G+G  R++ L+  FG++  +  ++ + + ++ GI    A  +++   
Sbjct: 355 STRMTASALDSVPGLGEHRRKALVTHFGSIARLKEATVDEITAVPGIGVATATAVHDALR 414

Query: 609 KNTSHT 614
            ++S  
Sbjct: 415 PDSSGA 420


>gi|13507864|ref|NP_109813.1| excinuclease ABC subunit C [Mycoplasma pneumoniae M129]
 gi|2499104|sp|P75350|UVRC_MYCPN RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|1673677|gb|AAB95677.1| excinuclease ABC subunit C [Mycoplasma pneumoniae M129]
          Length = 586

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 134/583 (22%), Positives = 248/583 (42%), Gaps = 36/583 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +  P  PG Y   D AG+VLYVGKA ++ KR+  Y + N  + +   ++ +I ++ + 
Sbjct: 11  KLKNAPHKPGCYLWKDDAGQVLYVGKAKDIFKRVHHYFNPNR-SFKTRALVERIADVEYV 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E +AL LEA +IK+ KPRFN++L+++  + Y  IT   K P L   R     +  Y
Sbjct: 70  ILKNENDALNLEAKLIKQYKPRFNLVLKENNGYLYFFITASVK-PTLELGRRYEFSKNKY 128

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFAS     +  +       L          R  PC  +Q+K C G C GE + E+Y 
Sbjct: 129 FGPFASSKF--RLRDIYDLLLKLFPLRKCAPHERGHPCFYYQLKMCMGQCMGEDTPERYQ 186

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
             V   ++F + G   +   + +   +A+ ++++E+A    D   A+  + N   + +  
Sbjct: 187 TTVKGIEQFFNHGPEQVLNHLQQQEIKASEQQNFEAARHFLDLQKAVLELVNMQQTAFIK 246

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILS--YFLRQFYT 295
                D       KN+  I    +   Q  G      +   +       +   F+  +Y+
Sbjct: 247 AKQSHDFIGYVFEKNVLAITVFAYVDNQLIGKNQQVFELPQDDEKEVESALVTFIYHYYS 306

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P+ + +S   E  SLL          K+ +T PK GE++ I++  + NA  +   K
Sbjct: 307 TNKIPKTLTVSLSEENLSLLA------NSLKINVTQPKNGEQKSILQTVIDNARYALNTK 360

Query: 356 LSTEISHQMILKDFTKKFAL--PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYR 413
            +  I++    +   +   L      + +EI D S       VG M+       +K   R
Sbjct: 361 WTGFINNLNRAEVHQQLAQLLQVPSIQSLEIIDISFYDKDHVVGAMLRYENGKRMKALSR 420

Query: 414 KFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGK 473
           ++N++ +     +  A +       + ++I            Q +      D++I+DGG 
Sbjct: 421 RYNINIDHKGDTNYMADV------VYRRII---------SSIQTHKQLPLSDLLIVDGGI 465

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL 533
            Q++    V        +  II +AK  +     +   +     + ++   P+  ++  +
Sbjct: 466 AQINTVTKVFASFPNVTQPIIIGLAKNTRHQT--DHIVLTDNTTINIDKNTPLFAYLTTI 523

Query: 534 RDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSF 575
           ++E   FA     KR  +A + +PL +I G+G    ++LL +F
Sbjct: 524 QEEVDSFAKHNAFKRVSRARFQNPLLQIEGVGRKTVQILLDNF 566


>gi|187924865|ref|YP_001896507.1| excinuclease ABC subunit C [Burkholderia phytofirmans PsJN]
 gi|229558025|sp|B2SZU5|UVRC_BURPP RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|187716059|gb|ACD17283.1| excinuclease ABC, C subunit [Burkholderia phytofirmans PsJN]
          Length = 731

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 108/277 (38%), Positives = 155/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 18  QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTLLSPRIAMMVTRIARIETTVTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  HK P +  +R +   +  YFGP
Sbjct: 78  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGAVDRKNQYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC   I+ E Y   V
Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVAAINEEDYARDV 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++LS + +           
Sbjct: 197 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
            D  ++       C+       G++ G   +F     
Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293



 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 103/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            A++L  F+ Q Y     P  +++S       L+     +Q G+KV +    QG++R  +
Sbjct: 386 EAEVLEAFIAQHYLGNRVPPVLVVSHAPANRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 444

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +  T    +        RIE +D SH MG +    
Sbjct: 445 TMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRIECFDISHTMGEATQAS 504

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------------- 443
            VV   +    ++YR++N+    +   DD A MR VL RR+ +++               
Sbjct: 505 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVEQAAANAADEAAELQ 562

Query: 444 ---KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                + +L     +   +    P +V++DGGKGQ+  A+ V  +L ++  + ++ +AKG
Sbjct: 563 SDAAADPSLTPDAAEPVAAGGILPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 621

Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558
             R  G+E      G   L L      L  + ++RDEAHRFAIT  R +R K    S L+
Sbjct: 622 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 681

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS+ +A +IY   H
Sbjct: 682 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 731


>gi|167919863|ref|ZP_02506954.1| excinuclease ABC, C subunit [Burkholderia pseudomallei BCC215]
 gi|217420487|ref|ZP_03451992.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 576]
 gi|217395899|gb|EEC35916.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 576]
          Length = 747

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 469

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 470 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 529

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 530 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 587

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 588 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 646

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 647 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 707 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747


>gi|167720548|ref|ZP_02403784.1| putative excinuclease ABC subunit C [Burkholderia pseudomallei
           DM98]
          Length = 323

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294


>gi|119367637|sp|Q63SA4|UVRC_BURPS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 743

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 407 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 465

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 466 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 525

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 526 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 583

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 584 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 642

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 643 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 702

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 703 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 743


>gi|76811250|ref|YP_334265.1| excinuclease ABC subunit C [Burkholderia pseudomallei 1710b]
 gi|254191254|ref|ZP_04897758.1| excinuclease ABC, C subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|76580703|gb|ABA50178.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1710b]
 gi|157938926|gb|EDO94596.1| excinuclease ABC, C subunit [Burkholderia pseudomallei Pasteur
           52237]
          Length = 749

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 21  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 81  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 139

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 199

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 200 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 259

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 260 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 296



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 413 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 471

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 472 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 531

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 532 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 589

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 590 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 648

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 649 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 708

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 709 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 749


>gi|53720026|ref|YP_109012.1| excinuclease ABC subunit C [Burkholderia pseudomallei K96243]
 gi|52210440|emb|CAH36423.1| putative excinuclease ABC subunit C [Burkholderia pseudomallei
           K96243]
          Length = 745

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 21  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 81  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 139

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 199

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 200 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 259

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 260 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 296



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 409 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 467

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 468 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 527

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 528 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 585

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 586 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 644

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 645 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 704

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 705 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 745


>gi|254296881|ref|ZP_04964334.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 406e]
 gi|157807219|gb|EDO84389.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 406e]
          Length = 747

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 469

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 470 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 529

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 530 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 587

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 588 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 646

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 647 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 707 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747


>gi|126440938|ref|YP_001059790.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 668]
 gi|126454241|ref|YP_001067076.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1106a]
 gi|134278027|ref|ZP_01764742.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 305]
 gi|226199886|ref|ZP_03795436.1| excinuclease ABC, C subunit [Burkholderia pseudomallei Pakistan 9]
 gi|237813184|ref|YP_002897635.1| excinuclease ABC, C subunit [Burkholderia pseudomallei MSHR346]
 gi|242315111|ref|ZP_04814127.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1106b]
 gi|254195919|ref|ZP_04902345.1| excinuclease ABC, C subunit [Burkholderia pseudomallei S13]
 gi|254259510|ref|ZP_04950564.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1710a]
 gi|119367636|sp|Q3JQ88|UVRC_BURP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038029|sp|A3NXK5|UVRC_BURP0 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038030|sp|A3NBR9|UVRC_BURP6 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|126220431|gb|ABN83937.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 668]
 gi|126227883|gb|ABN91423.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1106a]
 gi|134251677|gb|EBA51756.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 305]
 gi|169652664|gb|EDS85357.1| excinuclease ABC, C subunit [Burkholderia pseudomallei S13]
 gi|225927942|gb|EEH23979.1| excinuclease ABC, C subunit [Burkholderia pseudomallei Pakistan 9]
 gi|237504907|gb|ACQ97225.1| excinuclease ABC, C subunit [Burkholderia pseudomallei MSHR346]
 gi|242138350|gb|EES24752.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1106b]
 gi|254218199|gb|EET07583.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1710a]
          Length = 747

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 469

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 470 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 529

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 530 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 587

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 588 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 646

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 647 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 707 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747


>gi|254184219|ref|ZP_04890809.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1655]
 gi|184214750|gb|EDU11793.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 1655]
          Length = 743

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294



 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 168/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG KR  +
Sbjct: 407 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGRKRAWL 465

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 466 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 525

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 526 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 583

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 584 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 642

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 643 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 702

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 703 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 743


>gi|242309228|ref|ZP_04808383.1| UvrABC system protein C [Helicobacter pullorum MIT 98-5489]
 gi|239524269|gb|EEQ64135.1| UvrABC system protein C [Helicobacter pullorum MIT 98-5489]
          Length = 518

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 163/547 (29%), Positives = 268/547 (48%), Gaps = 49/547 (8%)

Query: 76  MIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFGPFASVDAVEKT 134
           MIK+LKP++NILLRDDK++PY+ +      P +   R     Q   YFGP++S       
Sbjct: 1   MIKQLKPKYNILLRDDKTYPYLCVDISEDYPRILLTRKVFKSQSIHYFGPYSSGG--RDL 58

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++SL  TF L            + CL +QIKRC  PC G+IS E Y + + +A + +   
Sbjct: 59  LDSLYETFPLAQ--KESCLKGKKACLFYQIKRCLAPCEGKISKEDYRKILEQALECIQNP 116

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNK 251
              +   + + M   +    +E A++ RDR+A +  I   +   + RM   D F+L    
Sbjct: 117 KK-ILAILDKKMQFLSENLRFEEAMVLRDRIAKIKQISPLSGVDFARMEDLDIFALEIEG 175

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC--PENILLSEEA 309
           N   +   F   G+   + +  +K+  E    +I +  L  +Y+ +    P+ IL+  + 
Sbjct: 176 NKGVLVKFFVRGGRVVSSASNVIKSQYELNIEEIYTQSLINYYSGEILIKPKQILIPYDL 235

Query: 310 -EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKD 368
            E+   LE   +++   K+ I  PK G+K+++   AL NA  S    L+       IL D
Sbjct: 236 KEKKDELEQFLYQKLHKKIPIHCPKSGDKKQLCNLALKNAKESLNLNLTASE---EILLD 292

Query: 369 FTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDC 428
             K F L ++P RIEI+D SH  G   VG MVV  +  F+K  YR +      ++  D+ 
Sbjct: 293 IQKLFGLQNMPYRIEIFDTSHHRGKQCVGAMVVY-DERFIKESYRHY-----LLEGSDEY 346

Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488
             M+ +L+RR  +  +                   PD+ +LDGG GQ++ A+ +L    V
Sbjct: 347 LQMKEMLQRRIEKFKEE----------------VPPDLWVLDGGVGQINLAKDLLNSAGV 390

Query: 489 ENRITIISIAK-----GPKRSAG--MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
              + ++ I+K        R+ G  ++    +KG+   L   D  L F+Q+LRDEAHRFA
Sbjct: 391 --NLEVVGISKEKLDSKAHRAKGAALDILRDEKGQEYRLKSSDKRLQFLQKLRDEAHRFA 448

Query: 542 ITTH-RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           IT H ++++K    S + E+ G+G   ++ LL  FG+ + I ++S + L  +  +SKK+A
Sbjct: 449 ITFHQKQKQKTMQQSKVLEVKGVGKAIQKRLLAYFGSFEGIKKASLDELEKV--LSKKLA 506

Query: 601 CKIYNHF 607
             +Y   
Sbjct: 507 KSVYEGL 513


>gi|167619246|ref|ZP_02387877.1| excinuclease ABC, C subunit [Burkholderia thailandensis Bt4]
          Length = 342

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQEAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMVYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFSNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVE 294


>gi|295677166|ref|YP_003605690.1| excinuclease ABC, C subunit [Burkholderia sp. CCGE1002]
 gi|295437009|gb|ADG16179.1| excinuclease ABC, C subunit [Burkholderia sp. CCGE1002]
          Length = 743

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 110/277 (39%), Positives = 156/277 (56%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D +G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 21  QLPHLPGVYRYYDTSGVVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  HK P +  +R S   +  YFGP
Sbjct: 81  SEAEALLLENNLIKALTPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGSVDRKNQYFGP 139

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC   IS E Y   V
Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVANISEEDYARDV 199

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    + +++ + M+    +  +E A   R+++++LS + +           
Sbjct: 200 ANASRFLLGRQGEVMKELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 259

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
            D  ++       C+       G++ G   +F     
Sbjct: 260 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPTHVE 296



 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/350 (28%), Positives = 167/350 (47%), Gaps = 28/350 (8%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            +++L  F+ Q Y     P  +++S       +      +Q G+KV +    QG++R  +
Sbjct: 399 ESEVLEAFIAQHYLGNRVPPVLVVSHAPARELI--DVLIEQAGHKVSVLRQPQGQRRAWL 456

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +  T    +        RIE +D SH MG +    
Sbjct: 457 AMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRIECFDISHTMGEATQAS 516

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN------------- 445
            VV   +    ++YR++N+    +   DD A MR VL RR+ +++               
Sbjct: 517 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANASDEAAESQ 574

Query: 446 -----EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                + +L     +   +    P +V++DGGKGQ+  A+ V  +L ++  + ++ +AKG
Sbjct: 575 TDAAADPSLAADAAEPAAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 633

Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558
             R  G+E      G   L L      L  + ++RDEAHRFAIT  R +R K    S L+
Sbjct: 634 EGRKVGLETLIFADGRTPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 693

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS+ +A +IY   H
Sbjct: 694 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 743


>gi|167895233|ref|ZP_02482635.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 7894]
          Length = 337

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294


>gi|167825149|ref|ZP_02456620.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 9]
          Length = 338

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294


>gi|167581160|ref|ZP_02374034.1| excinuclease ABC, C subunit [Burkholderia thailandensis TXDOH]
          Length = 740

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQEAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFSNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVE 294



 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 100/341 (29%), Positives = 170/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 404 ETEVLEAFIAQHYLGNRVPPILVVSHAIANRELIDLLV-EQAGHKVALVRQPQGQKRAWL 462

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 463 AMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 522

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 523 CVVYHHHKMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 580

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +  +   S    P++V++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 581 DGNAVQAAASAGRLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 639

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 640 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 699

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 700 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 740


>gi|257138467|ref|ZP_05586729.1| excinuclease ABC, C subunit [Burkholderia thailandensis E264]
 gi|119367638|sp|Q2SXS5|UVRC_BURTA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 740

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQEAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFSNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVE 294



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 404 ETEVLEAFIAQHYLGNRVPPILVVSHAIANRELIDLLV-EQAGHKVALVRQPQGQKRAWL 462

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 463 AMAEQNARLALARLLSEQGSQQARARSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 522

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 523 CVVYHHHKMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 580

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P++V++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 581 DGNAVHAAASAGRLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 639

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 640 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 699

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 700 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 740


>gi|83720723|ref|YP_442274.1| excinuclease ABC subunit C [Burkholderia thailandensis E264]
 gi|83654548|gb|ABC38611.1| excinuclease ABC, C subunit [Burkholderia thailandensis E264]
          Length = 742

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 21  QLPHLPGVYRYYDAQEAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 81  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 139

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFSNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 199

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 200 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 259

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 260 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVE 296



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 406 ETEVLEAFIAQHYLGNRVPPILVVSHAIANRELIDLLV-EQAGHKVALVRQPQGQKRAWL 464

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 465 AMAEQNARLALARLLSEQGSQQARARSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 524

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 525 CVVYHHHKMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 582

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P++V++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 583 DGNAVHAAASAGRLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 641

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 642 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 701

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 702 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 742


>gi|167739540|ref|ZP_02412314.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 14]
          Length = 342

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294


>gi|167837337|ref|ZP_02464220.1| excinuclease ABC, C subunit [Burkholderia thailandensis MSMB43]
          Length = 721

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/277 (38%), Positives = 153/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  M+++I  +  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQSSPRIAMMVTRIARVETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H  P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHAFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVE 294



 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 170/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 385 ETEVLEAFIAQHYLGNRVPPILVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 443

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 444 AMAEQNARLALARLLSEQGSQQARTRALADVLGYESDDLAQLRIECFDISHTMGEATQAS 503

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 504 CVVYHHHKMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 561

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P++V++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 562 DGNAVHAAASAGRLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 620

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R KA   S L+E+ G+G  R
Sbjct: 621 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKARQTSRLEELEGVGAKR 680

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 681 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 721


>gi|167570677|ref|ZP_02363551.1| excinuclease ABC, C subunit [Burkholderia oklahomensis C6786]
          Length = 739

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDTQGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H  P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHTFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A + R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAALVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPTHVE 294



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 99/341 (29%), Positives = 168/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 403 ETEVLEAFIAQHYLGNRVPPILVVSHAPANRELIDLL-IEQVGHKVAVVRQPQGQKRAWL 461

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +                RIE +D SH MG +    
Sbjct: 462 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLGLLRIECFDISHTMGEATQAS 521

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 522 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVEEAAAEASAEEAAGI 579

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P++V++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 580 DGNAVHAAASARGLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 638

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 639 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 698

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS++GIS+ +A +IY   H
Sbjct: 699 RQRLLARFGGLRGVVAASVDELASVDGISRALAEQIYRQLH 739


>gi|167846646|ref|ZP_02472154.1| excinuclease ABC, C subunit [Burkholderia pseudomallei B7210]
          Length = 350

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D    VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDAQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294


>gi|296158223|ref|ZP_06841055.1| excinuclease ABC, C subunit [Burkholderia sp. Ch1-1]
 gi|295891559|gb|EFG71345.1| excinuclease ABC, C subunit [Burkholderia sp. Ch1-1]
          Length = 741

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  +  TVT 
Sbjct: 18  QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARVETTVTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  HK P +  +R +   +  YFGP
Sbjct: 78  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGAVDRKNQYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC   IS E Y   V
Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVAAISEEDYARDV 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    +  ++ + M+    +  +E A   R+++++LS + +           
Sbjct: 197 ANASRFLLGRQGEVMSELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
            D  ++       C+       G++ G   +F     
Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293



 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            +++L  F+ Q Y     P  +++S       L+     +Q G+KV +    QG++R  +
Sbjct: 396 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 454

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +  T    +        RIE +D SH MG +    
Sbjct: 455 AMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRIECFDISHTMGEATQAS 514

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN------------- 445
            VV   +    ++YR++N+    +   DD A MR VL RR+ +++               
Sbjct: 515 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANAADEAAELQ 572

Query: 446 -----EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                + +L     +   +    P +V++DGGKGQ+  A+ V  +L ++  + ++ +AKG
Sbjct: 573 SDAAVDPSLAPDAAEPVAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 631

Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558
             R  G+E      G   L L      L  + ++RDEAHRFAIT  R +R K    S L+
Sbjct: 632 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 691

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS+ +A +IY   H
Sbjct: 692 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 741


>gi|119367639|sp|Q13VN8|UVRC_BURXL RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
          Length = 734

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  +  TVT 
Sbjct: 18  QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARVETTVTR 77

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  HK P +  +R +   +  YFGP
Sbjct: 78  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGAVDRKNQYFGP 136

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC   IS E Y   V
Sbjct: 137 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVAAISEEDYARDV 196

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    +  ++ + M+    +  +E A   R+++++LS + +           
Sbjct: 197 ANASRFLLGRQGEVMSELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 256

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
            D  ++       C+       G++ G   +F     
Sbjct: 257 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 293



 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            +++L  F+ Q Y     P  +++S       L+     +Q G+KV +    QG++R  +
Sbjct: 389 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 447

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +  T    +        RIE +D SH MG +    
Sbjct: 448 VMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRIECFDISHTMGEATQAS 507

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------------- 443
            VV   +    ++YR++N+    +   DD A MR VL RR+ +++               
Sbjct: 508 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANAADEAAELQ 565

Query: 444 ---KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                + +L     +   +    P +V++DGGKGQ+  A+ V  +L ++  + ++ +AKG
Sbjct: 566 SDAAADPSLAPDAAEPVAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 624

Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558
             R  G+E      G   L L      L  + ++RDEAHRFAIT  R +R K    S L+
Sbjct: 625 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 684

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS+ +A +IY   H
Sbjct: 685 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 734


>gi|91784697|ref|YP_559903.1| excinuclease ABC subunit C [Burkholderia xenovorans LB400]
 gi|91688651|gb|ABE31851.1| Excinuclease ABC subunit C [Burkholderia xenovorans LB400]
          Length = 753

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/277 (38%), Positives = 154/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  +  TVT 
Sbjct: 37  QLPHLPGVYRYYDTHGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARVETTVTR 96

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  HK P +  +R +   +  YFGP
Sbjct: 97  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHKFPRMAYYRGAVDRKNQYFGP 155

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC   IS E Y   V
Sbjct: 156 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCTAPCVAAISEEDYARDV 215

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM-- 242
             A +FL G    +  ++ + M+    +  +E A   R+++++LS + +           
Sbjct: 216 ANASRFLLGRQGEVMSELEQKMHAFASELKFEQAAAVRNQMSSLSTVLHQQAIEVGSDSD 275

Query: 243 -DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
            D  ++       C+       G++ G   +F     
Sbjct: 276 VDILAVVALGGRVCVNLAMVRGGRHLGDKAYFPAHVE 312



 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 168/350 (48%), Gaps = 27/350 (7%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            +++L  F+ Q Y     P  +++S       L+     +Q G+KV +    QG++R  +
Sbjct: 408 ESEVLEAFIAQHYLGNRVPPVLVVSHAPATRELV-DVLIEQAGHKVTVLRQPQGQRRAWL 466

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHI---PKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +  T    +        RIE +D SH MG +    
Sbjct: 467 VMAEQNARLALARLLSEQGSQQARTRALTDTLGMECDDLAHLRIECFDISHTMGEATQAS 526

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLI--------------- 443
            VV   +    ++YR++N+    +   DD A MR VL RR+ +++               
Sbjct: 527 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVAQAAANAADEAAELQ 584

Query: 444 ---KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
                + +L     +   +    P +V++DGGKGQ+  A+ V  +L ++  + ++ +AKG
Sbjct: 585 SDAAADPSLAPDAAEPVAAGGVLPTIVLIDGGKGQVEIARQVFTELGLDTGM-LVGVAKG 643

Query: 501 PKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLD 558
             R  G+E      G   L L      L  + ++RDEAHRFAIT  R +R K    S L+
Sbjct: 644 EGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRGKTRQTSRLE 703

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           E+ G+G  R++ LL  FG ++ +  +S E LAS+EGIS+ +A +IY   H
Sbjct: 704 ELEGVGAKRRQRLLARFGGLRGVVAASVEDLASVEGISQALAEQIYRQLH 753


>gi|167563516|ref|ZP_02356432.1| excinuclease ABC, C subunit [Burkholderia oklahomensis EO147]
          Length = 741

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+++I  I  TVT 
Sbjct: 21  QLPHLPGVYRYYDTQGAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTR 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H  P +  +R +   +  YFGP
Sbjct: 81  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHTFPRMAYYRGAVDKKNQYFGP 139

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 199

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A + R+++++L+ + +           
Sbjct: 200 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAALVRNQMSSLAKVLHQQAIDVGGDSD 259

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 260 VDILAVVALGGRLCVNLAMVRGGRHLGDKAYFPTHVE 296



 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/341 (29%), Positives = 168/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 405 ETEVLEAFIAQHYLGNRVPPILVVSHAPANRELIDLL-IEQVGHKVAVVRQPQGQKRAWL 463

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +                RIE +D SH MG +    
Sbjct: 464 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLGLLRIECFDISHTMGEATQAS 523

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 524 CVVYHHHKMQSSEYRRYNI--TGITPGDDYAAMRQVLTRRYEKMVEEAAAEASAEEAAGI 581

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P++V++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 582 DGNAVHAAASAGGLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 640

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 641 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 700

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS++GIS+ +A +IY   H
Sbjct: 701 RQRLLARFGGLRGVVAASVDELASVDGISRALAEQIYRQLH 741


>gi|254357715|ref|ZP_04973988.1| excinuclease ABC, C subunit [Burkholderia mallei 2002721280]
 gi|148026842|gb|EDK84863.1| excinuclease ABC, C subunit [Burkholderia mallei 2002721280]
          Length = 747

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D+   VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDVQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 469

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 470 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 529

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 530 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 587

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 588 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 646

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 647 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 707 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747


>gi|53726362|ref|YP_102348.1| excinuclease ABC subunit C [Burkholderia mallei ATCC 23344]
 gi|52429785|gb|AAU50378.1| excinuclease ABC, C subunit [Burkholderia mallei ATCC 23344]
          Length = 749

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D+   VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 21  QLPHLPGVYRYYDVQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 80

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 81  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 139

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 140 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 199

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 200 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 259

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 260 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 296



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 413 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 471

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 472 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 531

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 532 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 589

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 590 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 648

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 649 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 708

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 709 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 749


>gi|67641145|ref|ZP_00439930.1| excinuclease ABC, C subunit [Burkholderia mallei GB8 horse 4]
 gi|121599778|ref|YP_993761.1| excinuclease ABC, C subunit [Burkholderia mallei SAVP1]
 gi|124384524|ref|YP_001028773.1| excinuclease ABC, C subunit [Burkholderia mallei NCTC 10229]
 gi|126448863|ref|YP_001081319.1| excinuclease ABC, C subunit [Burkholderia mallei NCTC 10247]
 gi|167000789|ref|ZP_02266596.1| excinuclease ABC, C subunit [Burkholderia mallei PRL-20]
 gi|254178189|ref|ZP_04884844.1| excinuclease ABC, C subunit [Burkholderia mallei ATCC 10399]
 gi|254199241|ref|ZP_04905607.1| excinuclease ABC, C subunit [Burkholderia mallei FMH]
 gi|254205548|ref|ZP_04911900.1| excinuclease ABC, C subunit [Burkholderia mallei JHU]
 gi|119367635|sp|Q62LS1|UVRC_BURMA RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038026|sp|A3MM33|UVRC_BURM7 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038027|sp|A2SA04|UVRC_BURM9 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|189038028|sp|A1V6A8|UVRC_BURMS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|121228588|gb|ABM51106.1| excinuclease ABC, C subunit [Burkholderia mallei SAVP1]
 gi|124292544|gb|ABN01813.1| excinuclease ABC, C subunit [Burkholderia mallei NCTC 10229]
 gi|126241733|gb|ABO04826.1| excinuclease ABC, C subunit [Burkholderia mallei NCTC 10247]
 gi|147748837|gb|EDK55911.1| excinuclease ABC, C subunit [Burkholderia mallei FMH]
 gi|147752991|gb|EDK60056.1| excinuclease ABC, C subunit [Burkholderia mallei JHU]
 gi|160699228|gb|EDP89198.1| excinuclease ABC, C subunit [Burkholderia mallei ATCC 10399]
 gi|238522011|gb|EEP85458.1| excinuclease ABC, C subunit [Burkholderia mallei GB8 horse 4]
 gi|243063337|gb|EES45523.1| excinuclease ABC, C subunit [Burkholderia mallei PRL-20]
          Length = 747

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 155/277 (55%), Gaps = 4/277 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D+   VLYVGKA +L+KR+ SY      + RI  MI++I  I  TVT 
Sbjct: 19  QLPHLPGVYRYYDVQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMITRIARIETTVTR 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGP
Sbjct: 79  SEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGP 137

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V
Sbjct: 138 FPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDV 197

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---R 241
             A +FL G    +  ++ R M+    +  +E A   R+++++L+ + +           
Sbjct: 198 DNASRFLLGRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSD 257

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
           +D  ++       C+       G++ G   +F     
Sbjct: 258 VDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPAHVE 294



 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 411 ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 469

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 470 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 529

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 530 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 587

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 588 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 646

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 647 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 706

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 707 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 747


>gi|78356061|ref|YP_387510.1| excinuclease ABC subunit C [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|90111068|sp|Q313T1|UVRC_DESDG RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|78218466|gb|ABB37815.1| Excinuclease ABC subunit C [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 700

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 101/313 (32%), Positives = 153/313 (48%), Gaps = 5/313 (1%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY   D AG+V+YVGKA +L++R+ SY      HT +   M+     +    T 
Sbjct: 9   IPTTPGVYLYKDPAGKVVYVGKAKHLRRRVASYFRDIQRHTPKTRAMLRSAATVETLSTT 68

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEA++IK+ +PR+NILLRDDK +    +T KH  P L   R       +YFGP
Sbjct: 69  TEKEALLLEASLIKKHRPRYNILLRDDKQYVLFQLTRKHHWPRLVLTRKVRKDGSAYFGP 128

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  A  +T   + + F LR C+D  FR+R RPCL   + +C GPC  ++  + YM+ V
Sbjct: 129 FTSGQAARQTWKVIHKVFPLRRCSDKAFRNRVRPCLYHFMNQCPGPCVLDVDRDGYMQMV 188

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NR 241
            + +  L+G +  L + +  +M  A+   ++E A + RD+L A+        ++    + 
Sbjct: 189 RKVEMLLAGRSTELIDMLRADMQAASDALEFEEAALLRDQLQAVERTVERQAAVLPGVHD 248

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-DKPCP 300
           MD   L        +   F           FF    +     ++L  FL Q+Y      P
Sbjct: 249 MDAVGLAEAGGGLALSVLFIRRSVLLDKRNFFWSGLTLEEGPEVLLSFLTQYYGPGSFIP 308

Query: 301 ENILLSEEAEETS 313
             IL+  +     
Sbjct: 309 PRILVPWDIRTED 321



 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 122/305 (40%), Gaps = 35/305 (11%)

Query: 316 EISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFAL 375
                +  G  V++  P+     +++  A  NA      +   +++          K  +
Sbjct: 417 AEMLTELRGGPVRVLPPRNATDNQLVTMATENAREDARAEKRPDVAGV-----IAAKLGM 471

Query: 376 PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435
              P RIE  D SH  G +    +VV       ++QYR +    ++              
Sbjct: 472 SAPPVRIEAVDVSHTGGSNTRVGVVVFENGTPARDQYRTYAFADDEAGG----------- 520

Query: 436 ERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495
                    +   L     ++ +S P WPD++++DGG+GQL+A    L+         + 
Sbjct: 521 --------DDTGVLALWAVRRVHSGPPWPDLLLVDGGRGQLAAVMTALESAGAGGLFAVA 572

Query: 496 SIAK-------GPKRSAGM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
           SIAK          R AG      F   +   +      P L F+Q +RD  H +AI  H
Sbjct: 573 SIAKARNEETGRADRRAGNLADRIFLPGRSNPVNFKSGSPELLFLQHVRDTVHDYAIGRH 632

Query: 546 RKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R+ R  AA S  L  + GIGP   RLL + F +++ +  +  + LA++ GI K  A  I+
Sbjct: 633 RRARSGAALSGELQRMQGIGPATARLLWEHFSSLQEMVDAGEKGLAALPGIGKAKAAVIH 692

Query: 605 NHFHK 609
               +
Sbjct: 693 EGLKR 697


>gi|312795551|ref|YP_004028473.1| Excinuclease ABC subunit C [Burkholderia rhizoxinica HKI 454]
 gi|312167326|emb|CBW74329.1| Excinuclease ABC subunit C [Burkholderia rhizoxinica HKI 454]
          Length = 781

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 109/280 (38%), Positives = 152/280 (54%), Gaps = 7/280 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+P  PGVY+  D  G VLYVGKA +L+KR+ SY      + RI  M+ +I  I  TVT 
Sbjct: 25  QLPHLPGVYRYYDAQGAVLYVGKARDLKKRVSSYFTRTLVSPRIALMVQRIARIETTVTR 84

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E EALLLE N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +      YFGP
Sbjct: 85  SEAEALLLENNLIKALTPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKNNQYFGP 143

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F S  AV ++I  LQR F LR+C DSVF +RTRPCLL QI RC+ PC G IS E Y   V
Sbjct: 144 FPSSWAVRESIQILQRVFQLRTCEDSVFSNRTRPCLLHQIGRCTAPCVGAISDEDYARDV 203

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY----- 239
             A +FL G    +  ++   M+    +  +E A   R+++++LS + +           
Sbjct: 204 TNAARFLQGRQREVMNELEDKMHGYAAELKFEQAAAVRNQMSSLSKVLHQQAIEVGAERG 263

Query: 240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
               D  ++       C+       G++ G   +F     
Sbjct: 264 SGDADILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPSHVE 303



 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 105/361 (29%), Positives = 170/361 (47%), Gaps = 31/361 (8%)

Query: 275 KTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQ 334
           K   +   A++L  F+ Q Y   P P  I++S       L+     +Q G+KV +    Q
Sbjct: 425 KAARDGIEAEVLDAFIAQHYIGHPVPPVIIVSHAPATRELV-DVLAQQCGHKVSLIRQPQ 483

Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK---RIEIYDNSHIM 391
           G+KR  +  A  NA  +  + LS + S Q   +   +  ++        RIE +D SH M
Sbjct: 484 GQKRAWLSMAEQNARLALARLLSEQGSQQARTRALAQVLSIDLEDLSSLRIECFDISHTM 543

Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN------ 445
           G +     VV   +     +YR++N+    +   DD A MR VL RR+ +++        
Sbjct: 544 GEATQASCVVYHHHKMQSAEYRRYNI--TGITPGDDYAAMRQVLTRRYEKVVSQLAGASS 601

Query: 446 ----------------EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
                            +                P +V++DGGKGQ+  A+ V  +L ++
Sbjct: 602 TLPADVQPPARDAAPARDAQPAAQAGAVAGAGVLPHIVLIDGGKGQVEIARQVFTELGLD 661

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
             I ++ +AKG  R  G+E      G   L L      L  + ++RDEAHRFAIT  R +
Sbjct: 662 AGI-LVGVAKGEGRKVGLETLVFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAK 720

Query: 549 RKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R KA +S  L+E+ G+G  R++ LL  FG ++ +  +S + LAS+EG+S+ +A +IY+  
Sbjct: 721 RAKARHSSRLEELEGVGAKRRQRLLARFGGLRGVMSASIDELASVEGVSRALAEQIYHQL 780

Query: 608 H 608
           H
Sbjct: 781 H 781


>gi|218709937|ref|YP_002417558.1| putative excinuclease ABC subunit C [Vibrio splendidus LGP32]
 gi|218322956|emb|CAV19133.1| putative excinuclease ABC subunit C [Vibrio splendidus LGP32]
          Length = 352

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 114/318 (35%), Positives = 175/318 (55%), Gaps = 9/318 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + + E PGVY+M +    V+YVGKA NL+KR+ SY      + +   ++S I+ I  TV
Sbjct: 11  LKTVTEQPGVYRMYNAEAVVIYVGKAKNLKKRLSSYFRKKVDSEKTRALVSNIDKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-GHKHPRLSMHRGAKKKKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT-GEISSEKYM 181
           GP+    AV +T++ LQ+ F  R C D+V+ +RTRPCL++QI RC+ PC    IS E+Y 
Sbjct: 130 GPYPDSGAVRETLHLLQKIFPARQCEDTVYANRTRPCLMYQIGRCAAPCVSSIISDEEYS 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN- 240
           E +   + FL G +  + E +   M+ A+ +  +E A   RD++ A+  +Q       + 
Sbjct: 190 ELIDYVRLFLQGKDKLVLETLIEKMDTASRELRFEQAAAFRDQIQAIRRVQEQQYVSDDS 249

Query: 241 --RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY---- 294
              MD         +ACI       G+  G+ + F K  + +   ++ S FL Q+Y    
Sbjct: 250 MEDMDVLGFAQENGVACIHILMIRQGKVLGSRSHFPKIPNNTVREEVFSSFLSQYYLAHN 309

Query: 295 TDKPCPENILLSEEAEET 312
             +  P  ++L+ +  E 
Sbjct: 310 EARTIPTRLILNADLMED 327


>gi|111657553|ref|ZP_01408293.1| hypothetical protein SpneT_02001254 [Streptococcus pneumoniae
           TIGR4]
          Length = 346

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 145/323 (44%), Gaps = 9/323 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDEAYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G +  + + +   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDDKIIDDLKSKMAVAAQSMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFK 321
            P  +L+ ++ +E ++  +   K
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDSK 324


>gi|15828627|ref|NP_325987.1| excinuclease ABC subunit C [Mycoplasma pulmonis UAB CTIP]
 gi|14089569|emb|CAC13329.1| EXCINUCLEASE ABC SUBUNIT C [Mycoplasma pulmonis]
          Length = 563

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 136/609 (22%), Positives = 222/609 (36%), Gaps = 59/609 (9%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+ PGVY   D    +LY+GKA NL  R+K Y   + ++++   ++ +I N    
Sbjct: 5   KLDSVPKKPGVYFWKDQFNSILYIGKANNLNDRMKQYFKGSLNSYKTHALVEKIANFEII 64

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI--QG 119
           +     EAL+LE N+I++ KP +NILL DDK F YI I        +   R         
Sbjct: 65  IVQNPKEALILERNLIRKHKPYYNILLSDDKRFSYIKIFLNKDGLEISIARRVYKNSQNT 124

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            Y+GPF +       +  LQR                           +G       S  
Sbjct: 125 LYYGPFPTGHGSSIILKLLQREALYE----------------------NGIFIENKDSVF 162

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           + +   + K  LS  N+    +I   M  A     +E A   +     L  ++    +  
Sbjct: 163 WKQRFEKIKDILSFKNNLYLNQIKEKMLIAAQNYQFEVANNLKLSHEYLMKLKESQIAEL 222

Query: 240 N---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                +D  S+     L      F+ +G         ++     +    +  F+ +FY +
Sbjct: 223 KKILNIDVISIIEKNGLLFSTIFFYKYGVLLNKVDHIIEIKI--SFEASVEEFINEFYKN 280

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
           K  P  ++L +   + +L      K    K  I          + E  L N +      L
Sbjct: 281 KIAPNLLILDKSFLKFNLELNFETKVLYPKKGIYKKLID---LVNENTLTNINEKEKVHL 337

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
                 +  L   +    +     RI + DNSH      +  +V   +     N+YRKFN
Sbjct: 338 LKIEKTKNNLDKLSNLINVK-NLHRIVMMDNSHFANFHPISVVVSYIDGIKNTNEYRKFN 396

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           L  N  +  D        L+   S+                      PD+ I+DG   QL
Sbjct: 397 LDVNHDRKADIEYFKEGFLKYINSK------------------SFIVPDLFIVDGSFAQL 438

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
              +  +KK N+     II++ K            +   E   L     +  F+  +++E
Sbjct: 439 HEVKKQMKKANLT--FPIIALVKDDFHRTKK---LIDTNEKEHLLEDKEVKNFLSMIQNE 493

Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
             +FA   H  RR K +    L  I G+GP  ++ L+  F T   I  +S + LA +  I
Sbjct: 494 VDQFAKKHHYNRRDKSSLEGSLLNIKGLGPKMEKKLISHFETYSNIYNASEKELAKV--I 551

Query: 596 SKKIACKIY 604
              IA KI 
Sbjct: 552 PLNIAKKIK 560


>gi|237800461|ref|ZP_04588922.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023320|gb|EGI03377.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 322

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 108/297 (36%), Positives = 170/297 (57%), Gaps = 6/297 (2%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D    +LYVGKA NL+KR+ SY     H  +   ++++I  I  T+T  E EALLLE 
Sbjct: 1   MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVARIAQIETTITGNETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
            +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  A+ ++
Sbjct: 61  TLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGAKKAKGRYFGPYPSAGAIRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  +  FL G 
Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252
           ++ L +++  +M +A +  D+E A   RD++A +  +Q+          +D  + + N  
Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALMRRVQDQQSMDGGTGDVDVVAAFVNPG 239

Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLS 306
            AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  ++++
Sbjct: 240 GACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEVIVN 296


>gi|148988983|ref|ZP_01820383.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP6-BS73]
 gi|147925480|gb|EDK76557.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP6-BS73]
          Length = 346

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 9/323 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P  PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDT-KTEALVSEIVDFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT + +EALLLE N+IK  KP++NI+L+DDKS+P+I IT+  + P L   R      G Y
Sbjct: 67  VTESNIEALLLEINLIKENKPKYNIMLKDDKSYPFIKITN-ERYPRLIITRQVKKDGGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+  V A  +    L R F  R C +      ++ C  + I +C      +     + 
Sbjct: 126 FGPYPDVGAANEIKRLLDRIFPFRKCTNPP----SKVCFYYHIGQCMAHTICKKDETYFK 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
               E   FL G ++ + +++   M  A    ++E A  +RD + A+  ++     +   
Sbjct: 182 SMAQEVSDFLKGQDNKIIDELKGKMAAAAQTMEFERAAEYRDLIQAIGTLRTKQRVMAKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D F  Y +K   C+Q  F   G+            ++     +             
Sbjct: 242 LQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYFNDPDEDFLTYVGQFYQEKSHL 301

Query: 299 CPENILLSEEAEETSLLEISFFK 321
            P  +L+ ++ +E ++  +   K
Sbjct: 302 VPNEVLIPQDIDEEAVKALVDTK 324


>gi|289626300|ref|ZP_06459254.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
          Length = 321

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 110/297 (37%), Positives = 170/297 (57%), Gaps = 6/297 (2%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E EALLLE 
Sbjct: 1   MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
            +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  A+ ++
Sbjct: 61  TLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGAKKAKGRYFGPYPSAGAIRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  +  FL G 
Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252
           ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  + + N  
Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239

Query: 253 LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLS 306
            AC+       G+  G+  FF +   E    +++S FL Q++    D+  P  ++++
Sbjct: 240 GACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEVIVN 296


>gi|308190195|ref|YP_003923126.1| UvrABC system protein C [Mycoplasma fermentans JER]
 gi|307624937|gb|ADN69242.1| UvrABC system protein C [Mycoplasma fermentans JER]
          Length = 574

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 138/614 (22%), Positives = 243/614 (39%), Gaps = 66/614 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PG+Y   D   +V+YVGKA NL+KR+  Y     ++++ + ++ +I      +
Sbjct: 10  LKNVSTAPGIYLWKDKNDQVIYVGKAKNLRKRMHQYFEGAINSYKTSRLVEEIRAYEVFI 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS-- 120
             T  EALLLE   I +  P +NILL DD+ +PY+ +    +   +   R       +  
Sbjct: 70  CKTNKEALLLEKLYIDKYNPEYNILLLDDRRYPYLKVQLSDRGLDISLSRKIGKKNETNK 129

Query: 121 --YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             YFGPF       + +  L+R  F                         G        +
Sbjct: 130 LFYFGPFPIGYGSIQILKLLEREAFYE----------------------KGLKIKNNDPK 167

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            + E  ++ K  LS  +++   +I   M +    E +E A   +     L  +       
Sbjct: 168 FWQEKFNKIKSILSFKDNSYINEIKEKMFKEAEAEHFELARDLKLSWEYLKKLNEEQIIE 227

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               + +D F+     N+  +   F+  G         L  D +    + L  F  ++Y 
Sbjct: 228 LKDIHNLDVFAYKTVDNIIYMTILFYRSGLLINKDNQALNIDIDE--IETLEKFFNKYYE 285

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH--- 352
           +K  P+ IL+ E+                  + I  PK G+K++++E A +N        
Sbjct: 286 NKIKPDEILVEEKINNL-------NLNLDENLNIVTPKIGDKKRVLEIAQLNLEEYFSKE 338

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              +  +  H +++ +  KK       K I ++DNS++   + VG  +V       KN Y
Sbjct: 339 HLLIKNKNDHALLMLEEFKKLIKIDSLKNIILFDNSNLANSNPVGVAIVYSNGLKNKNLY 398

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RKFN H +    + D   M+  +++ FS     ++                 D++I+DGG
Sbjct: 399 RKFN-HIDIYSREADVEYMKESIKKYFSSADNKKDF----------------DLIIVDGG 441

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
             Q+  A+ VL  L++  +I I+ + K             +    +       +L F+  
Sbjct: 442 LAQIHEAKKVLFDLDI--KIPIVGLVKDDFHRTRALIDLQENLVKI---KNKDLLNFLAS 496

Query: 533 LRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++ E  RFA +  R R R       L  I G+G   +  LL +F T   I  +  E L  
Sbjct: 497 MQIEVDRFAKSHLRNRNRITTFEGSLQSIKGLGKCAETKLLNTFKTYVNIFNAPLEELEK 556

Query: 592 IEGISKKIACKIYN 605
           +  +SKKIA +I  
Sbjct: 557 V--VSKKIALEIKK 568


>gi|319777505|ref|YP_004137156.1| uvrabc system protein c [Mycoplasma fermentans M64]
 gi|318038580|gb|ADV34779.1| UvrABC system protein C [Mycoplasma fermentans M64]
          Length = 574

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 138/614 (22%), Positives = 243/614 (39%), Gaps = 66/614 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PG+Y   D   +V+YVGKA NL+KR+  Y     ++++ + ++ +I      +
Sbjct: 10  LKNVSTAPGIYLWKDKNDQVIYVGKAKNLRKRMHQYFEGAINSYKTSRLVEEIRAYEVFI 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS-- 120
             T  EALLLE   I +  P +NILL DD+ +PY+ +    +   +   R       +  
Sbjct: 70  CKTNKEALLLEKLYIDKYNPEYNILLLDDRRYPYLKVQLSDRGLDISLSRKIGKKNETNK 129

Query: 121 --YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             YFGPF       + +  L+R  F                         G        +
Sbjct: 130 LFYFGPFPIGYGSIQILKLLEREAFYE----------------------KGLKIKNNDPK 167

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            + E  ++ K  LS  +++   +I   M +    E +E A   +     L  +       
Sbjct: 168 FWQEKFNKIKSILSFKDNSYINEIKEKMFKEAETEHFELARDLKLSWEYLKKLNEEQIIE 227

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               + +D F+     N+  +   F+  G         L  D +    + L  F  ++Y 
Sbjct: 228 LKDIHNLDVFAYKTVDNIIYMTILFYRSGLLINKDNQALNIDIDE--IETLEKFFNKYYE 285

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH--- 352
           +K  P+ IL+ E+                  + I  PK G+K++++E A +N        
Sbjct: 286 NKIKPDEILVEEKINNL-------NLNLDENLNIVTPKIGDKKRVLEIAQLNLEEYFSKE 338

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              +  +  H +++ +  KK       K I ++DNS++   + VG  +V       KN Y
Sbjct: 339 HLLIKNKNDHALLMLEEFKKLIKIDSLKNIILFDNSNLANSNPVGVAIVYSNGLKNKNLY 398

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RKFN H +    + D   M+  +++ FS     ++                 D++I+DGG
Sbjct: 399 RKFN-HIDIYSREADVEYMKESIKKYFSSADNKKDF----------------DLIIVDGG 441

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
             Q+  A+ VL  L++  +I I+ + K             +    +       +L F+  
Sbjct: 442 LAQIHEAKKVLFDLDI--KIPIVGLVKDDFHRTRALIDLQENLVKI---KNKDLLNFLAS 496

Query: 533 LRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           ++ E  RFA +  R R R       L  I G+G   +  LL +F T   I  +  E L  
Sbjct: 497 MQIEVDRFAKSHLRNRNRITTFEGSLQSIKGLGKCAETKLLNTFKTYVNIFNAPLEELEK 556

Query: 592 IEGISKKIACKIYN 605
           +  +SKKIA +I  
Sbjct: 557 V--VSKKIALEIKK 568


>gi|205356265|ref|ZP_03223031.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345870|gb|EDZ32507.1| excinuclease ABC subunit C [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 536

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 160/569 (28%), Positives = 261/569 (45%), Gaps = 48/569 (8%)

Query: 51  MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110
           MI +  ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P    
Sbjct: 1   MIEETVHLEFIATNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEI 60

Query: 111 HRD-SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169
            R      +  YFGPF       + +++L   + L+  A         PC+ +QI RC  
Sbjct: 61  TRKLVKKSKIKYFGPF--FKGARELLDALYLYYPLKQKASC-----KSPCIFYQISRCLA 113

Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229
           PC   IS EKY+E + EA   L   +  L + + + M      E+YE A   RD++A + 
Sbjct: 114 PCDKLISREKYLEILDEAIHALLNPSVLL-KNLEKQMLVLAQNENYEEAAKVRDQIAMIK 172

Query: 230 HIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQ 284
            ++   +         + F+L    ++          G+     +    +K D +    +
Sbjct: 173 DLEVKVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKIISANSKITPIKNDIQWDQNE 232

Query: 285 ILSYFLRQFYTDKPCP--ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIE 342
           I    + + ++         I + EE E+  LLE    +++  K+ I +PK GEKR+I +
Sbjct: 233 IYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICD 292

Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402
            A  NA  +       +     I K+    F L ++P  IEI+DNSH+ G + VG MV  
Sbjct: 293 LAFQNALLNIE--KEQKNHDFTIQKELKFYFELENLPNDIEIFDNSHLQGVANVGAMVTY 350

Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462
             N + K++YRKF+L       ++D   MR VL R                +  ++    
Sbjct: 351 RINSWNKSKYRKFHLK-----HKNDYDQMREVLTR----------------RALDFDKIP 389

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI----AKGPKRSAGMEKFFVKKGEAL 518
            PD+ ++DGGK  L  A+ ++        I  IS     AK  +   G +          
Sbjct: 390 PPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHSLKGEF 449

Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA--AYSPLDEINGIGPLRKRLLLQSFG 576
            L++ D  L F+Q+LRDEAHRFAI+ H+  +KK     S L  + G+     + LL  +G
Sbjct: 450 SLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANL-GLSSGVIQKLLAYYG 508

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYN 605
             + I ++  + L  + G  +K A KI  
Sbjct: 509 NFESIYKADFKDLTMLVG--RKAAQKIKE 535


>gi|323219583|gb|EGA04067.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
          Length = 293

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 163/282 (57%), Gaps = 4/282 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEVLVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M +A+    +E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTERQFVSNAG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281
           + +D   +  +  +AC+   F   G+  G+ ++F K    + 
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTE 291


>gi|195939216|ref|ZP_03084598.1| excinuclease ABC subunit C [Escherichia coli O157:H7 str. EC4024]
          Length = 285

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 105/276 (38%), Positives = 161/276 (58%), Gaps = 4/276 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEEEYA 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY-- 239
           + V   + FLSG +  +  ++   M  A+   ++E A   RD++ A+  +          
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVSNTG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK 275
           + +D   +  +  +AC+   F   G+  G+ ++F K
Sbjct: 250 DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPK 285


>gi|330950408|gb|EGH50668.1| excinuclease ABC subunit C [Pseudomonas syringae Cit 7]
          Length = 336

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 117/352 (33%), Positives = 184/352 (52%), Gaps = 22/352 (6%)

Query: 264 GQNRGTCTFFLKTDSESTNAQILSYFLRQFYT---DKPCPENILLSEEAEETSLLEISFF 320
           G+  G+  FF +   E    +++S FL Q++    D+  P  ++++   ++      +  
Sbjct: 2   GRVLGSKNFFPQVGIEEEVGEVMSAFLAQYFLGGIDRELPGEVIVNVINDDFPAFVDAVE 61

Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPK 380
           +  G ++ I+   +G + +  + A+ NA ++ T +L+         +   K   L   P 
Sbjct: 62  ELRGVEMVISHRVRGTRARWQQMAVTNAEQALTARLANRQHVASRFEALAKVLGLEDPPM 121

Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFS 440
           R+E YD SH  G + V   VV G  G +K+ YR+FN+    V   DD A M   L RR+S
Sbjct: 122 RLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VTAGDDYAAMHQALTRRYS 179

Query: 441 QLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG 500
           ++   E  L              PDV+++DGGKGQ+S A+ VL +L V + I ++ +AKG
Sbjct: 180 RIKAGEGKL--------------PDVLLVDGGKGQMSMARDVLNELQVPDLI-LLGVAKG 224

Query: 501 PKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLD 558
             R AG E  ++        L    P L+ IQ++RDEAHRFAIT HR RR K    S L+
Sbjct: 225 TTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAHRFAITGHRARRGKTRRTSTLE 284

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A  IY + H  
Sbjct: 285 GVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 336


>gi|269114859|ref|YP_003302622.1| UvrABC system protein C (UvrC protein, Excinuclease ABC subunit C)
           [Mycoplasma hominis]
 gi|268322484|emb|CAX37219.1| UvrABC system protein C (UvrC protein, Excinuclease ABC subunit C)
           [Mycoplasma hominis ATCC 23114]
          Length = 568

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 118/607 (19%), Positives = 223/607 (36%), Gaps = 63/607 (10%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTV 62
           + +P  PGVY   +  G ++YVGKA +L+ R+  Y      ++ +   M  +I +    +
Sbjct: 9   KNVPHKPGVYLWKNKNGNIIYVGKAKDLKNRMLQYFDIKMQNSFKTEKMRQEIADFSTII 68

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT-DKHKIPALYKHRDSSTIQGS- 120
             +E EA + E  +I   KP +N+L     SFPYI +         +           S 
Sbjct: 69  LSSEREAFIEERKLIDFYKPFYNVLFPTRDSFPYIRVKLLSTNKLIIDIKNHYKKEPNSI 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GP       +  I                        L   +    G    + S E  
Sbjct: 129 YYGPIPDNKNFKPLIRY----------------------LNHLLLSKDGIIIEKQSPEFA 166

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238
            +   +AK  +     + K  + + +N+A     +E A  +   L  L++ +   +    
Sbjct: 167 KQRFEQAKSIMK-FGPDFKRNLKQKINEAIEMNLFEQARFYDQILDLLNYNKQSQNIFIK 225

Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
               +D F  Y  +N   +    +  G    +  +  +        + ++ F+ +FY + 
Sbjct: 226 TIKDIDVFGFYQYQNYMMVNVMIYKNGSLVNSYDYIFEIILNE--HEFVNQFIDEFYVNN 283

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P  I++    +   L    +  +    +        +    IE A  N  +     LS
Sbjct: 284 QLPAQIIIP--LKYYELGGFDYNDKVSAPLNKLNKNLIDIA--IENASNNIEQKIKNYLS 339

Query: 358 TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
            +     I         L    +RI ++DNS +   + V       +NG    ++ +F  
Sbjct: 340 KQTKDNEIFNKLCS--YLNVYAERIVLFDNSFLSNTNEVIGAACYFKNGQAFKKFYRFYN 397

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
              ++    D   M+         L                      DVVI+DG  GQ++
Sbjct: 398 LKLNLLRNADVEYMQQTSFNYLKDL------------------GDQVDVVIVDGSIGQIN 439

Query: 478 AAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
             +  +  LN+   I +  + K  K     +K        + ++ +D +   + R++ E 
Sbjct: 440 EVKKSMAFLNL--NIPLFGLVKNSKHET--QKLIDSNNNEIKIDDQD-VFNLLSRMQTEV 494

Query: 538 HRFAI-TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
            RFA    ++K+RK    +PL +I GIG      L+  FG+ K I ++S + ++ +   +
Sbjct: 495 DRFAKYRYNQKQRKSMLSNPLLKIKGIGFKTIEKLINYFGSYKKIQQASFDEISKVA--N 552

Query: 597 KKIACKI 603
           KK+A  I
Sbjct: 553 KKVAKLI 559


>gi|330813706|ref|YP_004357945.1| dihydroneopterin aldolase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486801|gb|AEA81206.1| dihydroneopterin aldolase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 341

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 130/327 (39%), Positives = 191/327 (58%), Gaps = 3/327 (0%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P  PG+Y+ LD   +++Y+GKA NL KR+++Y  S+    R   +IS I  +   
Sbjct: 14  KIKNIPNSPGIYKFLDNKNKIIYIGKAKNLPKRLQNYTSSSGLAVRTQRLISSIKELEII 73

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T  E EALLLEAN+IK+ KPR+N+LL+DDKSFPYI I      P L K R     Q  Y
Sbjct: 74  TTSNESEALLLEANLIKKFKPRYNVLLKDDKSFPYIQIRMSDSWPQLTKFRGKHNDQDLY 133

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFASV +   TI  LQ+ F +R C D  F++RTRPC+L+QIKRCS PCT EI    Y 
Sbjct: 134 FGPFASVASANWTIKMLQKVFQIRVCDDHTFKNRTRPCMLYQIKRCSAPCTNEIEKINYK 193

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V     FL+G + ++++K ++ M  A+   D+E A I RDR+ +L++IQ+      + 
Sbjct: 194 ISVQNCIDFLNGKSRSIQQKFSKEMEVASKNLDFEKAAIFRDRIKSLTYIQSSQQINKDN 253

Query: 242 M---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
               D    Y + N++CI   F+   QN G   FF K DSE++ ++++  FL QFY +K 
Sbjct: 254 FIDADVVVSYRSSNISCIVVFFYRSKQNWGNQCFFPKHDSENSESEVMDAFLAQFYENKI 313

Query: 299 CPENILLSEEAEETSLLEISFFKQYGY 325
            P  I+L+ + +   LL+ +  ++   
Sbjct: 314 PPRQIVLNIKPKNLDLLQKALERKNKK 340


>gi|225021368|ref|ZP_03710560.1| hypothetical protein CORMATOL_01387 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945750|gb|EEG26959.1| hypothetical protein CORMATOL_01387 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 485

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 123/481 (25%), Positives = 209/481 (43%), Gaps = 57/481 (11%)

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   V +   FL+G    +  K+   M  A  + D+E A   RD LAA++ +      + 
Sbjct: 9   HRRIVDDLCAFLAGRTSPITTKLETEMQAAAAELDFERAARIRDNLAAITALTEQQAIVL 68

Query: 240 ---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST--NAQILSYFLRQFY 294
                 D  ++  ++  A IQ      G+ +G   + ++   +    + Q++  FL +FY
Sbjct: 69  PDGTDADVIAIDTDELEAAIQLFHIRAGRVKGQRGWVVERTDDHDGGSEQLMQDFLIRFY 128

Query: 295 TDKP--------------------------------CPENILLSEEAEETSLLEISFFKQ 322
           +D                                   P  IL+     +    E +  + 
Sbjct: 129 SDAADQEQTVRDSEEKAIKRRGVDNYVPIDTTATSVVPHEILVEIPPADIPHTEAALSQL 188

Query: 323 YGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE----ISHQMILKDFTKKFALPHI 378
            G  V+I  PK+G+K+ ++     NA  +  Q          +    L++      LP  
Sbjct: 189 RGGPVRIKTPKRGDKKTLMTTVHRNATEALKQHKLKRVGDLTARSAALQELQNSLFLPEA 248

Query: 379 PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ-DDCAMMRMVLER 437
           P RIE  D SHI G   V  +VV  +    K+ YR++ +         DD A +  V  R
Sbjct: 249 PLRIECTDISHIQGTDVVASLVVFEDGLPKKSDYRRYKITDAAGDGHSDDVASIAEVTRR 308

Query: 438 RF------SQLIKNEENLNFHPKKQEYS--FPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
           RF      S+ +   +   F  +K + S  F   P + I+DGG  Q++AAQ VL +L + 
Sbjct: 309 RFLRHHLDSRTVPELDGSQFEDEKPQTSNKFAYPPQLFIVDGGAPQVAAAQQVLDELGIT 368

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549
           + + +I IAK  +     E +   +   L+L      L+ IQ +RDEAHRFAIT HR++R
Sbjct: 369 D-VPVIGIAKRLE-----EIWVAGEKYPLILPRHSQALFLIQHIRDEAHRFAITFHRQQR 422

Query: 550 K-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             +   S LD I G+G  R+  L++ FG+VK + ++S   + +++G   ++A  +Y+  H
Sbjct: 423 SARMRRSELDNIKGLGAARRTELVKHFGSVKQLRQASVADITAVKGFGPQLAQNVYDALH 482

Query: 609 K 609
            
Sbjct: 483 P 483


>gi|262366022|gb|ACY62579.1| excinuclease ABC subunit C [Yersinia pestis D182038]
          Length = 343

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 120/344 (34%), Positives = 187/344 (54%), Gaps = 8/344 (2%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D AG V+YVGKA +L+KR+ SY  +     +   ++  I  I  TVT TE EALLLE 
Sbjct: 1   MYDTAGTVIYVGKAKDLKKRLTSYFRAQVANRKTETLVKNIAQIDVTVTHTETEALLLEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGPF +  AV +T
Sbjct: 61  NYIKLYQPRYNVLLRDDKSYPLIFLSADE-HPRLAVHRGAKHEKGEYFGPFPNSYAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           +  LQ+ F +R C +SV+R+R+RPCL +QI RCSGPC    +S E+Y   V   + FLSG
Sbjct: 120 LALLQKLFPVRQCENSVYRNRSRPCLQYQIGRCSGPCVEGLVSEEEYQRQVDYVRLFLSG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--DCFSLYHNK 251
            +  +  ++   M +A+ +  +E A   RD++ A+  +        +    D   +  + 
Sbjct: 180 KDQQVLTQLITRMEEASQQLHFEDAARIRDQIQAVRRVTEQQFVSGDSEDLDVIGVAFDA 239

Query: 252 NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY----TDKPCPENILLSE 307
            LAC+   F   G+  G+ ++F K  + +  ++++  F+ QFY      +  P  ILL  
Sbjct: 240 GLACVHVLFIRLGKVLGSRSYFPKVPAGTELSEVVQTFVGQFYLQGSQGRTLPGEILLDF 299

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
              E  LL  S  +  G K++I    +G++ + ++ A  NA  +
Sbjct: 300 TLTEKDLLASSLSELAGRKIQIQSRPRGDRARYLKLARTNASTA 343


>gi|329121128|ref|ZP_08249759.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965]
 gi|327471290|gb|EGF16744.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965]
          Length = 457

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 140/467 (29%), Positives = 230/467 (49%), Gaps = 33/467 (7%)

Query: 156 TRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215
           TRPCL + I  CS PC   +S EKY E+V +      G ++ + + +   M +A+    +
Sbjct: 4   TRPCLQYHINLCSAPCCNLVSQEKYNEYVKKLCNIFEGKSYEIIKTLKEKMKEASENLQF 63

Query: 216 ESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFF 273
           E A ++RD + A+  +Q   + +      D   +   +N A  +  +  +G+  G   F 
Sbjct: 64  EKAAMYRDEINAVKSVQQRQNIVSKEGDFDVIGMARTENYAAFEIFYIRYGRMVGKENFN 123

Query: 274 LKTDSESTNAQILSYFLRQFYT--DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331
           +    +  +  I++ FL+ FY+  +   P+ I++S+  E+  L++          V + V
Sbjct: 124 ISGTEDERDESIIAAFLKNFYSSDNINIPKEIIISKIPEDFELIKKWLSGIRHNDVSLIV 183

Query: 332 PKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDN 387
           P++G KRK+ E A++NA         Q    ++  Q  L    +   LP IP+RIE +D 
Sbjct: 184 PERGFKRKLKEMAIVNATKYLSDKKIQWEHQKMREQGALIKLKEILKLPKIPERIECFDI 243

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447
           SH  G    G MVV       K  YRKF L        DD   M  V+ERR++       
Sbjct: 244 SHNQGSETTGSMVVFVNGRPEKKAYRKFKLKTTQG-KPDDFKSMAEVMERRYN------- 295

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
                    +      PD+++LDGGKGQL+AA  +++   +E   T+I +AK  +     
Sbjct: 296 ---------DKKIGRNPDLIVLDGGKGQLNAAVPLIRNSGIEA--TVIGLAKRME----- 339

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPL 566
           E +   + E +V++  D +L+ +Q +RDE+HRF I  HR+   K+   S LD I GIGP+
Sbjct: 340 EIYLENQTEPIVIDRHDEVLHLLQFVRDESHRFVINYHRQWISKRNRESILDHIEGIGPV 399

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           R++ L  +F T+  + ++S E L  ++GI+KK+A  IYN F      
Sbjct: 400 RRKNLWAAFRTLDDMKKASVEELQKVKGINKKVAENIYNFFRMKKDE 446


>gi|120603218|ref|YP_967618.1| excinuclease ABC subunit C [Desulfovibrio vulgaris DP4]
 gi|120563447|gb|ABM29191.1| Excinuclease ABC subunit C [Desulfovibrio vulgaris DP4]
          Length = 688

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/316 (32%), Positives = 152/316 (48%), Gaps = 5/316 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P  PGVY   D +GR++YVGKA  L++R+ SY    +  T +   M+     I  
Sbjct: 5   DLSTIPLTPGVYLYKDESGRIIYVGKARCLRRRVASYFRDVSALTPKTVAMLRHAVTIDT 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE EALLLEA++IK+ +PR+NI+LRDDK +    I  KH  P L   R +    G 
Sbjct: 65  LSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRIGAKHPYPRLEIVRKARRDDGR 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF S  A  +T  ++ R F LR C+D  F +R R CL   + +C GPC  E+ SE Y
Sbjct: 125 YFGPFTSASAARETWKTIHRAFPLRRCSDRAFGNRVRACLYHHMGQCLGPCVNEVPSETY 184

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              + +    LSG +  L + +   M  A+   D+E A + RDR+ AL        ++  
Sbjct: 185 AALLEQVSLLLSGRSGELVDALRTEMEAASQGLDFERAAVLRDRIRALERTVERQAAVLP 244

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-D 296
               +D   +   +N   +   F   G      +FF      +   ++L  FL QFY   
Sbjct: 245 GGGDLDVVGVVEIENGLALGVLFVRQGVLLDGRSFFWPGLGFAEAPELLWSFLGQFYGPQ 304

Query: 297 KPCPENILLSEEAEET 312
              P  I++    +E 
Sbjct: 305 ATIPPRIVVPWLPDED 320



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 36/275 (13%)

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391
           P+   + ++++ A+ NA        +   +   +     +   L   P RIE  D SH  
Sbjct: 408 PRNPAENRLVDMAMSNAREE-----ARRKADTPLQDLLARALHLAGPPHRIEAVDVSHTG 462

Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451
           G +    MVV  +       YR +     D    DD   +     R              
Sbjct: 463 GRNTRVGMVVFEDGKPFPEAYRTYAFEDGDG---DDYGTLAAWAGR-------------- 505

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK------GPKRSA 505
               +  S P WPD++++DGG+GQL+A     ++  +     + SIAK         R A
Sbjct: 506 ----RVESGPPWPDLLLVDGGRGQLAAVVRAFEECGMGAAFAVASIAKARTEEGRADRRA 561

Query: 506 GM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEIN 561
           G      F   +   L L    P L F+Q +RD  H ++I  HR+ R   A    L  + 
Sbjct: 562 GNVSDRIFLPGRANPLPLRAGAPELLFLQHVRDTVHDYSIGKHRRARAGAALTGELQRVE 621

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           GIGP   R L + F +++ ++ +  E LA++ G+ 
Sbjct: 622 GIGPATARALWERFDSLQAMAEAGVEGLAAVPGVG 656


>gi|167465815|ref|ZP_02330904.1| excinuclease ABC subunit C [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 378

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/341 (26%), Positives = 157/341 (46%), Gaps = 11/341 (3%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +  G ++YVGKA  L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 24  LPDQPGCYLMKNKDGVIIYVGKAKVLKNRVRSYFTGS-HDGKTQRLVSEIRDFEYIVTSS 82

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+ +PR+N+LL+DDKSFPYI IT   + P L   R     +G YFGP+
Sbjct: 83  NIEALILECNLIKKHRPRYNVLLKDDKSFPYIKIT-HEEHPRLEVTRKIVKDRGKYFGPY 141

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++T   L R + LR C         R CL + + +C  PC  +++ E+  E + 
Sbjct: 142 PNAYAAQETKKLLDRLYPLRKCKHMP----DRVCLYYHMGQCLAPCVYDVTKEQNEEMIQ 197

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
              +FL+GG+  +K  +   M+ A  + ++E A   RD++A +  +              
Sbjct: 198 GITRFLNGGHEEIKRDLTAKMHAAAEELNFERAKELRDQIAYIEAVMEKQKITMADHVDR 257

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  +   G+             +    +    ++ Q Y+D P    
Sbjct: 258 DVFGYSTDKGWMCVQILYMRQGKLIERHVSMFPFYGDE--YEDFITYVTQAYSDNPALPK 315

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQ 343
            +      +    +     +   K       Q E     E 
Sbjct: 316 EIFLPLRNKAGEQKAGESHEISGKDSFIEALQKEDEFQKEH 356


>gi|34978695|gb|AAQ83590.1| UvrC [Vibrio fischeri ES114]
          Length = 298

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/288 (34%), Positives = 160/288 (55%), Gaps = 5/288 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY  SN  + +   ++S I+ +  TV
Sbjct: 10  LKSVTHQPGVYRMYNAEADVIYVGKAKDLKKRLSSYFRSNVPSEKTKALVSHIHQVDVTV 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T +E EAL+LE N IK+  P++N+LLRDDKS+PYI I+ +HK P +  HR     +G YF
Sbjct: 70  THSETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFIS-QHKHPRISIHRGVKRKKGEYF 128

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG-EISSEKYM 181
           GP+    AV ++++ +Q+ F +R C DSV+ +R RPCL+ QI RC  PC    +S E+Y 
Sbjct: 129 GPYPDSGAVRESLHLIQKLFPIRQCEDSVYANRHRPCLMHQIGRCLAPCVKGIVSDEEYK 188

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E     + FL G +  + + + + M  A+   ++E A I RD++ A+  +Q       + 
Sbjct: 189 EQTDFIRLFLQGKDRQVIQTLVKQMESASQSLNFEKAAIIRDQIQAMRRVQEQQYVSDDS 248

Query: 242 MDC---FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286
            D            LAC+       G+  G+ +FF K  + +   ++ 
Sbjct: 249 GDDLDVLGFAIENGLACVHLLMIRQGKILGSRSFFPKIPANTDKEEVF 296


>gi|308070605|ref|YP_003872210.1| UvrABC system protein C (UvrC protein) [Paenibacillus polymyxa
           E681]
 gi|305859884|gb|ADM71672.1| UvrABC system protein C (UvrC protein) [Paenibacillus polymyxa
           E681]
          Length = 705

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 90/356 (25%), Positives = 160/356 (44%), Gaps = 10/356 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+  G Y M +  G ++YVGKA  L+ R++SY   + H  +   ++S I +  + VT +
Sbjct: 25  LPDASGCYLMKNSEGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQRLVSDIRDFEYIVTGS 83

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+ +PR+N+LL+DDK+FPY+ IT+    P L   R     +  YFGP+
Sbjct: 84  NMEALILECNLIKKYQPRYNVLLKDDKTFPYLKITN-EAHPKLEVTRRVLKDKAKYFGPY 142

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +T   L R + LR C           CL + + +C GPC  E+  E Y +   
Sbjct: 143 PNSYAAHQTKKLLDRMYPLRKCGVMPKE----VCLYYHMHQCLGPCVKEVEKETYDQIGQ 198

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E   FLSGG+  +K+ + R M +A  +  +E A   RD++ ++  +        +     
Sbjct: 199 EIGSFLSGGHEEIKKDLQRKMQEAAEELYFERAKELRDQIISIDAMMEKQKITTSDAKDR 258

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  +   G+                 +  +SY  + +  +   P+ 
Sbjct: 259 DVFGFSVDKGWMCVQILYVRKGKMIERHMSTFPF-YGEAYSDFMSYVTQYYSDNPAVPQE 317

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
           ILL +  +     +++  +    +  +      +     +   I    +       
Sbjct: 318 ILLPDSPKMMQAEQVNVDQPVAAETALHSAPTADATGQTDDKAIQTEIAPDASNVQ 373



 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 135/287 (47%), Gaps = 27/287 (9%)

Query: 332 PKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDN 387
           P++G K+++   A  NA              E        +  +   L  +  R+E +DN
Sbjct: 440 PQRGLKKQMTGMATENARVALDEKFKLIERDEERTSKAASNLGRAIGLDSL-HRVEAFDN 498

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447
           S+I G   V  M+V  +    K +YRK+ +    V+  DD   MR V+ RR+ +++K   
Sbjct: 499 SNIQGSDPVSAMIVFIDGKPAKKEYRKYKIRS--VQGPDDYETMREVIRRRYERVLKEN- 555

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV-LKKLNVENRITIISIAKGPKRSAG 506
                           PD++++DGG+GQ+ AA  V   +L +   I +  + K  K    
Sbjct: 556 -------------LERPDLIVVDGGRGQIKAATDVLQNELGL--FIPVCGLVKDAKHRTS 600

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGP 565
                 +  EA+ L       Y +QR++DE HRFAIT HR++R K+   S LD I GIG 
Sbjct: 601 Q-LLVGESSEAVTLARNSEEFYLLQRIQDEVHRFAITFHREQRGKSMVTSRLDSIPGIGE 659

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            R++LLL+ FG++K I  +S E    +  I  K+A +I     +  S
Sbjct: 660 KRRKLLLKHFGSLKKIREASVEDFRPL-SIGDKLARQIIAALREEES 705


>gi|119370542|sp|Q72DX8|UVRC_DESVH RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|311233046|gb|ADP85900.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris RCH1]
          Length = 688

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 104/316 (32%), Positives = 152/316 (48%), Gaps = 5/316 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P  PGVY   D +GR++YVGKA  L++R+ SY    +  T +   M+     I  
Sbjct: 5   DLSTIPLTPGVYLYKDESGRIIYVGKARCLRRRVASYFRDVSALTPKTVAMLRHAVTIDT 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE EALLLEA++IK+ +PR+NI+LRDDK +    I  KH  P L   R +    G 
Sbjct: 65  LSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRIGAKHPYPRLEIVRKARRDDGR 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF S  A  +T  ++ R F LR C+D  F +R R CL   + +C GPC  E+ SE Y
Sbjct: 125 YFGPFTSASAARETWKTIHRAFPLRRCSDRAFGNRVRACLYHHMGQCLGPCVNEVPSETY 184

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              + +    LSG +  L + +   M  A+   D+E A + RDR+ AL        ++  
Sbjct: 185 AALLEQVSLLLSGRSGELVDALRTEMEAASQGLDFERAAVLRDRIRALERTVERQAAVLP 244

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-D 296
               +D   +   +N   +   F   G      +FF      +   ++L  FL QFY   
Sbjct: 245 GGGDLDVVGVVEVENGLALGVLFVRQGVLLDGRSFFWPGLGFAEAPELLWSFLGQFYGPQ 304

Query: 297 KPCPENILLSEEAEET 312
              P  I++    +E 
Sbjct: 305 ATIPPRIVVPWLPDED 320



 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 36/275 (13%)

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391
           P+   + ++++ A+ NA        +   +   +     +   L   P RIE  D SH  
Sbjct: 408 PRNPAENRLVDMAMSNAREE-----ARRKADTPLQDLLARALHLAGPPHRIEAVDVSHTG 462

Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451
           G +    MVV  +       YR +     D    DD   +     R              
Sbjct: 463 GRNTRVGMVVFEDGKPFPEAYRTYAFEDGDG---DDYGTLAAWAGR-------------- 505

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK------GPKRSA 505
               +  S P WPD++++DGG+GQL+A     ++  +     + SIAK         R A
Sbjct: 506 ----RVESGPPWPDLLLVDGGRGQLAAVVRAFEECGMGAAFAVASIAKARTEEGRADRRA 561

Query: 506 GM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEIN 561
           G      F   +   L L    P L F+Q +RD  H ++I  HR+ R   A    L  + 
Sbjct: 562 GNVSDRIFLPGRANPLPLRAGAPELLFLQHVRDTVHDYSIGKHRRARAGAALTGELQRVE 621

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           GIGP   R L + F +++ ++ +  E LA++ G+ 
Sbjct: 622 GIGPATARALWERFDSLQAMADAGVEGLAAVPGVG 656


>gi|46579214|ref|YP_010022.1| excinuclease ABC subunit C [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448627|gb|AAS95281.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 702

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 104/316 (32%), Positives = 152/316 (48%), Gaps = 5/316 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P  PGVY   D +GR++YVGKA  L++R+ SY    +  T +   M+     I  
Sbjct: 19  DLSTIPLTPGVYLYKDESGRIIYVGKARCLRRRVASYFRDVSALTPKTVAMLRHAVTIDT 78

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE EALLLEA++IK+ +PR+NI+LRDDK +    I  KH  P L   R +    G 
Sbjct: 79  LSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRIGAKHPYPRLEIVRKARRDDGR 138

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF S  A  +T  ++ R F LR C+D  F +R R CL   + +C GPC  E+ SE Y
Sbjct: 139 YFGPFTSASAARETWKTIHRAFPLRRCSDRAFGNRVRACLYHHMGQCLGPCVNEVPSETY 198

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
              + +    LSG +  L + +   M  A+   D+E A + RDR+ AL        ++  
Sbjct: 199 AALLEQVSLLLSGRSGELVDALRTEMEAASQGLDFERAAVLRDRIRALERTVERQAAVLP 258

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT-D 296
               +D   +   +N   +   F   G      +FF      +   ++L  FL QFY   
Sbjct: 259 GGGDLDVVGVVEVENGLALGVLFVRQGVLLDGRSFFWPGLGFAEAPELLWSFLGQFYGPQ 318

Query: 297 KPCPENILLSEEAEET 312
              P  I++    +E 
Sbjct: 319 ATIPPRIVVPWLPDED 334



 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 36/275 (13%)

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391
           P+   + ++++ A+ NA        +   +   +     +   L   P RIE  D SH  
Sbjct: 422 PRNPAENRLVDMAMSNAREE-----ARRKADTPLQDLLARALHLAGPPHRIEAVDVSHTG 476

Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451
           G +    MVV  +       YR +     D    DD   +     R              
Sbjct: 477 GRNTRVGMVVFEDGKPFPEAYRTYAFEDGDG---DDYGTLAAWAGR-------------- 519

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK------GPKRSA 505
               +  S P WPD++++DGG+GQL+A     ++  +     + SIAK         R A
Sbjct: 520 ----RVESGPPWPDLLLVDGGRGQLAAVVRAFEECGMGAAFAVASIAKARTEEGRADRRA 575

Query: 506 GM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEIN 561
           G      F   +   L L    P L F+Q +RD  H ++I  HR+ R   A    L  + 
Sbjct: 576 GNVSDRIFLPGRANPLPLRAGAPELLFLQHVRDTVHDYSIGKHRRARAGAALTGELQRVE 635

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           GIGP   R L + F +++ ++ +  E LA++ G+ 
Sbjct: 636 GIGPATARALWERFDSLQAMADAGVEGLAAVPGVG 670


>gi|310643790|ref|YP_003948548.1| excinuclease abc, c subunit [Paenibacillus polymyxa SC2]
 gi|309248740|gb|ADO58307.1| Excinuclease ABC, C subunit [Paenibacillus polymyxa SC2]
          Length = 696

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/342 (26%), Positives = 158/342 (46%), Gaps = 10/342 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+  G Y M +  G ++YVGKA  L+ R++SY   + H  +   +++ I +  + VT +
Sbjct: 25  LPDASGCYLMKNSEGTIIYVGKAKVLKNRVRSYFTGS-HNGKTQRLVADIRDFEYIVTGS 83

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EAL+LE N+IK+ +PR+N+LL+DDK+FPY+ IT+    P L   R     +  YFGP+
Sbjct: 84  NMEALILECNLIKKHQPRYNVLLKDDKTFPYLKITN-EAHPKLEVTRRVLKDKAKYFGPY 142

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +T   L R + LR C           CL + + +C GPC  E+  E Y +   
Sbjct: 143 PNSYAAHQTKKLLDRMYPLRKCGVMPKE----VCLYYHMHQCLGPCVKEVEKETYDQISQ 198

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           E   FLSGG+  +K+ + R M +A  +  +E A   RD++ ++  +        +     
Sbjct: 199 EIGSFLSGGHEEIKKDLQRKMQEAAEELYFERAKELRDQIISIDAMMEKQKITTSDAKDR 258

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F    +K   C+Q  +   G+                 +  +SY  + +  +   P+ 
Sbjct: 259 DVFGFSVDKGWMCVQILYVRKGKMIERHMSTFPF-YGEAYSDFMSYVTQYYSDNPAVPQE 317

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
           ILL +  +          +    + ++      E   I ++ 
Sbjct: 318 ILLPDSPKLMKAKSADVDQPIATETELYSATTAETTGITDEE 359



 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 137/287 (47%), Gaps = 27/287 (9%)

Query: 332 PKQGEKRKIIEQALINAH----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDN 387
           P++G K+++   A  NA              E        +  +   L  +  R+E +DN
Sbjct: 431 PQRGLKKQMTGMATENARVALDEKFKLIERDEERTSKAASNLGRAIGLDSL-HRVEAFDN 489

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447
           S+I G   V  M+V  +    K +YRK+ +    V+  DD   MR V+ RR+ +++K   
Sbjct: 490 SNIQGSDPVSAMIVFIDGKPAKKEYRKYKIRS--VQGPDDYETMREVIRRRYERVLKEN- 546

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITIISIAKGPKRSAG 506
                           PD++I+DGG+GQ+ AA  VL+ +L +   I +  + K  K    
Sbjct: 547 -------------LERPDLIIVDGGRGQIKAATDVLENELGL--FIPVCGLVKDAKHRTS 591

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGP 565
                 +  EA+ L       Y +QR++DE HRFAIT HR++R K+   S LD I GIG 
Sbjct: 592 Q-LLMGETFEAVTLARNSEEFYLLQRIQDEVHRFAITFHREQRGKSMVTSQLDSIPGIGE 650

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            R++LLL+ FG++K I  +S E    +  I  K+A +I     +  S
Sbjct: 651 KRRKLLLKHFGSLKKIREASVEDFRPL-SIGDKLARQIIAALREEES 696


>gi|121591798|ref|ZP_01678992.1| excinuclease ABC, subunit C [Vibrio cholerae 2740-80]
 gi|121546340|gb|EAX56609.1| excinuclease ABC, subunit C [Vibrio cholerae 2740-80]
          Length = 396

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 198/413 (47%), Gaps = 29/413 (7%)

Query: 208 QATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFHFG 264
           QA+ +  +E A   RD++ A+  +Q       +    +D         +ACI       G
Sbjct: 2   QASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQG 61

Query: 265 QNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSEEA-EETSLLEISF 319
           +  G+ + F K  S+++  ++   FL Q+Y      +  P  I+L+    EET  L+I+ 
Sbjct: 62  KVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILNRGLTEETEALQIAI 121

Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP 379
            +  G KV   V   G + + ++ A  NA  + T K++ +++     K   ++  +  I 
Sbjct: 122 SELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKMNHKMTISQRFKALQEELGMDAIT 181

Query: 380 KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRF 439
            R+E +D SH MG S +   VV  + G +K +YR++N+    +   DD A M  VLERR+
Sbjct: 182 -RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNI--TGITGGDDYAAMAQVLERRY 238

Query: 440 SQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL--NVENRITIISI 497
           S+ +                    PD++ +DGGKGQL+ A  ++     +      II I
Sbjct: 239 SKQLD---------------SSKIPDIIFIDGGKGQLNRAYEIISSCWQDWPKYPKIIGI 283

Query: 498 AKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SP 556
           AKG  R  G+E      G+   L    P L+ IQ +RDE+H  AI  HR +R K    S 
Sbjct: 284 AKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIAGHRAQRGKTRRTST 343

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS  +A  IY    +
Sbjct: 344 LEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAENIYQALKQ 396


>gi|218887930|ref|YP_002437251.1| excinuclease ABC subunit C [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218758884|gb|ACL09783.1| excinuclease ABC, C subunit [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 762

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/321 (30%), Positives = 142/321 (44%), Gaps = 9/321 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH------SNNHTHRITHMISQINNI 58
            +P+ PGVY   D AGR+LYVGKA +L+KRI SY            T +   M+ Q   +
Sbjct: 8   NIPDTPGVYLYKDAAGRILYVGKAKHLRKRIASYFREAAEGAPPPQTPKTLAMLRQAERL 67

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
               T TE EALLLEA++IK+ +PR+NI+LRDDK +    +  KH  P L   R      
Sbjct: 68  DTLSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRLQKKHPYPRLDIVRAVRRDG 127

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             Y+GPF S  A   T  ++ R F LR C D    +R RPCL   I +C  PC  ++  E
Sbjct: 128 AQYYGPFTSAGAARATWKAIHRAFPLRRCTDRALENRVRPCLYHFIGQCLAPCVFDVPRE 187

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   V   +  LSG +  L  ++   M  A+   ++E A   RD++ A+        ++
Sbjct: 188 EYAALVQRVEMLLSGRSGELVGQLRTEMETASEALEFERAAALRDQIRAVERTVERQAAV 247

Query: 239 Y---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
                 +D   +        +   F   G       F           ++L  FL QFY 
Sbjct: 248 LPGGGDLDVVGIVDTGGGLGLGVLFVRQGAVLDGRAFLWPGLGFEEAPELLLSFLGQFYG 307

Query: 296 DKPCPENILLSEEAEETSLLE 316
                 + ++      T   E
Sbjct: 308 PHSAIPSRIVVPWLPVTEGTE 328



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/363 (23%), Positives = 138/363 (38%), Gaps = 52/363 (14%)

Query: 295 TDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQ 354
           +  P P              +E +     G  V+I  P+  E+ ++++ A  NA      
Sbjct: 405 SSAPIPPQAATDMSL---RAIEETLADLRGGPVRIVAPRSPEENRLVDMAAANAREH--- 458

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
             +   +   +     +   L    +R+E  D SH  G S    MVV  +   V++ +R 
Sbjct: 459 --ARRETEAPLPDLLARALHLSAPVRRVEAVDISHTGGRSTRAGMVVFEDGRPVRDAWRA 516

Query: 415 FNLH------PNDVKTQDDCAMMRMVLERRFSQLIKNE---------------------- 446
           + L        +   T     +     +  F+ L + E                      
Sbjct: 517 YALDRPADGSADLPDTNAPNGLSDGPPDGVFADLPEGEMAGHAGEVSETSAEHTSQPPTF 576

Query: 447 ------ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK- 499
                   L    +++  S P W D+V++DGG+GQLSA    +++   E    + SIAK 
Sbjct: 577 TAGDDYAALAGWARRRIASGPPWADLVLIDGGRGQLSAVHRAVREAGGEGLFALASIAKA 636

Query: 500 -----GPKRSAGM---EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
                   R AG      F   +   L L    P L F+Q +RD  H FAI  HR+ R  
Sbjct: 637 RTEDGRADRRAGNVADRIFLPGRTNPLPLRDGAPELLFLQHVRDAVHDFAIGRHRRARAG 696

Query: 552 A-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           A     L  + G+GP   RLL   FGT+  +  +S + LA + GI  + A +I+    + 
Sbjct: 697 AALTGELQRVEGVGPKTARLLWDRFGTLAAMRAASEKELAEVPGIGPRRARQIHQRLKEM 756

Query: 611 TSH 613
            + 
Sbjct: 757 DTS 759


>gi|121535496|ref|ZP_01667305.1| excinuclease ABC, C subunit domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305915|gb|EAX46848.1| excinuclease ABC, C subunit domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 352

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/349 (30%), Positives = 167/349 (47%), Gaps = 29/349 (8%)

Query: 271 TFFLKTDSESTNAQILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFKQYGYKVKI 329
           TF L    +  +A++L+ F++Q+Y+     P  ILL     E  LL        G +V++
Sbjct: 27  TFLLTGSDDEDDAEVLAAFMKQYYSQATFIPREILLPLALAEQDLLADWLTSIKGSRVEV 86

Query: 330 TVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIY 385
             P++G K+ ++  A  NA         +  ++  +    + +  +   L   P+RIE +
Sbjct: 87  ATPQRGTKKDLVTMAADNAATVLEEQAAKIQASADATAGAVLELGEYLDLASPPERIECF 146

Query: 386 DNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKN 445
           D SHI G   V  MVV       K+ YR++ L        DD   M+ V+ RR+    + 
Sbjct: 147 DISHIQGAETVASMVVFEGGRPKKDDYRRYKLRT-VEGKPDDFKSMQEVVGRRYRDAAQ- 204

Query: 446 EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505
                             PD++I+DGGKGQLSAA  V++ L + + I ++ +AK  +   
Sbjct: 205 ---------------GPLPDLIIIDGGKGQLSAALEVIRGLGLHD-IPVVGLAKEFEH-- 246

Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIG 564
               F   + + ++L      LY +QR+RDEAHRFAIT HRK R K    S LD I GIG
Sbjct: 247 ---IFREGESDPVILPRHSQALYLVQRIRDEAHRFAITYHRKLRSKRNMVSVLDHIPGIG 303

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
             R++ L   FG++  I  +  E LA++ G+++  A  +Y  F +    
Sbjct: 304 AKRRKALWDHFGSLAKIKAAEVEELAAVPGMTRPAAEAVYQFFRRKPGE 352


>gi|294786903|ref|ZP_06752157.1| excinuclease ABC subunit C [Parascardovia denticolens F0305]
 gi|294485736|gb|EFG33370.1| excinuclease ABC subunit C [Parascardovia denticolens F0305]
          Length = 790

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 162/303 (53%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y    +N   R  +M+    ++ +
Sbjct: 112 KPSDIPTQPGVYKWRDGQGRVIYVGKAKNLRNRLSNYFQPLHNLHPRTQNMVLTARSLEW 171

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+E+L LE   IK   PRFN++ RDDK++PY+ I+   + P ++  R+ +     
Sbjct: 172 TVVATELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISLSEEFPRIWVTRNRNKRGTR 231

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+  V  +  T++SL   + +R+CA S F       RPCLL  I +CS PC G IS+
Sbjct: 232 YFGPYPKVWNMRHTLDSLLHAYPVRTCAPSTFHKAQVTGRPCLLAYIGKCSAPCVGWISA 291

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           E +     +    L+G       + +   M +A+ K D+E A   RD+++ALS +   N 
Sbjct: 292 EDHRAMCEQLVGILTGRLGRTYADFLKEEMLEASRKLDFEKAARLRDQISALSSVLEQNS 351

Query: 237 SIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F L  ++  A +   F   G  RG  ++ ++   + ++AQ+++  + Q 
Sbjct: 352 VVFDADVDADIFGLASDELEASVHCFFVRAGTIRGERSWSVERVEDVSDAQLIADLISQV 411

Query: 294 YTD 296
           Y+D
Sbjct: 412 YSD 414



 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 98/320 (30%), Positives = 163/320 (50%), Gaps = 14/320 (4%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E +  + LE       G  V I V  +GEKR+++E+A  NA +S ++  
Sbjct: 474 SPVPREVIIPWEPDRKADLEEWLTGLRGSVVTIRVAARGEKRELMERASQNAQQSFSRLK 533

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGC-SAVGCMVVVGENGFVKNQ 411
           ++ ++        L +  +   L   P RIE YD S+  G    V  MVV  +    K +
Sbjct: 534 ASRMTDIGLRTQALNEIAQTLGLKEAPLRIEAYDISNASGGGYQVASMVVFEDGAPKKKE 593

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           YR F++   D +   DD + +   L RRF+      E  +   + +   F   P ++++D
Sbjct: 594 YRHFSIRGADGEGAVDDLSALYETLTRRFNHDKAGGEEPSPEAQSRPR-FAYRPSLIVVD 652

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG+ Q+ AA   L  L +++ I +  +AK  +     E +       +++  +   LY +
Sbjct: 653 GGQPQVKAAARALADLGIDD-IAVCGLAKKLE-----EIWLPDDDYPVIMKRQSEGLYLM 706

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HRK+R K +  S LD+I+G+G   +R LL  FG++K I  +S + L
Sbjct: 707 QRVRDESHRFAITYHRKKRSKGSLRSALDDIDGVGLSYQRKLLNHFGSLKAIKAASLDDL 766

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI K  A  IY+  H+
Sbjct: 767 QEVKGIGKAKASAIYSSLHQ 786


>gi|315226538|ref|ZP_07868326.1| excision endonuclease subunit UvrC [Parascardovia denticolens DSM
           10105]
 gi|315120670|gb|EFT83802.1| excision endonuclease subunit UvrC [Parascardovia denticolens DSM
           10105]
          Length = 728

 Score =  273 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 162/303 (53%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y    +N   R  +M+    ++ +
Sbjct: 50  KPSDIPTQPGVYKWRDGQGRVIYVGKAKNLRNRLSNYFQPLHNLHPRTQNMVLTARSLEW 109

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+E+L LE   IK   PRFN++ RDDK++PY+ I+   + P ++  R+ +     
Sbjct: 110 TVVATELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISLSEEFPRIWVTRNRNKRGTR 169

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+  V  +  T++SL   + +R+CA S F       RPCLL  I +CS PC G IS+
Sbjct: 170 YFGPYPKVWNMRHTLDSLLHAYPVRTCAPSTFHKAQVTGRPCLLAYIGKCSAPCVGWISA 229

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           E +     +    L+G       + +   M +A+ K D+E A   RD+++ALS +   N 
Sbjct: 230 EDHRAMCEQLVGILTGRLGRTYADFLKEEMLEASRKLDFEKAARLRDQISALSSVLEQNS 289

Query: 237 SIYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F L  ++  A +   F   G  RG  ++ ++   + ++AQ+++  + Q 
Sbjct: 290 VVFDADVDADIFGLASDELEASVHCFFVRAGTIRGERSWSVERVEDVSDAQLIADLISQV 349

Query: 294 YTD 296
           Y+D
Sbjct: 350 YSD 352



 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/320 (30%), Positives = 163/320 (50%), Gaps = 14/320 (4%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E +  + LE       G  V I V  +GEKR+++E+A  NA +S ++  
Sbjct: 412 SPVPREVIIPWEPDRKADLEEWLTGLRGSVVTIRVAARGEKRELMERASQNAQQSFSRLK 471

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGC-SAVGCMVVVGENGFVKNQ 411
           ++ ++        L +  +   L   P RIE YD S+  G    V  MVV  +    K +
Sbjct: 472 ASRMTDIGLRTQALNEIAQTLGLKEAPLRIEAYDISNASGGGYQVASMVVFEDGAPKKKE 531

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           YR F++   D +   DD + +   L RRF+      E  +   + +   F   P ++++D
Sbjct: 532 YRHFSIRGADGEGAVDDLSALYETLTRRFNHDKAGGEEPSPEAQSRPR-FAYRPSLIVVD 590

Query: 471 GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           GG+ Q+ AA   L  L +++ I +  +AK  +     E +       +++  +   LY +
Sbjct: 591 GGQPQVKAAARALADLGIDD-IAVCGLAKKLE-----EIWLPDDDYPVIMKRQSEGLYLM 644

Query: 531 QRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           QR+RDE+HRFAIT HRK+R K +  S LD+I+G+G   +R LL  FG++K I  +S + L
Sbjct: 645 QRVRDESHRFAITYHRKKRSKGSLRSALDDIDGVGLSYQRKLLNHFGSLKAIKAASLDDL 704

Query: 590 ASIEGISKKIACKIYNHFHK 609
             ++GI K  A  IY+  H+
Sbjct: 705 QEVKGIGKAKASAIYSSLHQ 724


>gi|111223984|ref|YP_714778.1| excinuclease ABC subunit C [Frankia alni ACN14a]
 gi|111151516|emb|CAJ63235.1| DNA excision repair enzyme UvrABC; UvrC subunit [Frankia alni
           ACN14a]
          Length = 802

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 148/299 (49%), Gaps = 7/299 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRVLYVGKA NL+ R+ +Y    +    R  HM+   + + +TV 
Sbjct: 13  SIPETPGVYRFRDEHGRVLYVGKAKNLRARLANYFADLHTLHPRTQHMVQAASAVDWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+P + +T   + P L   R        YFG
Sbjct: 73  STEVEALQLEYTWIKEFDPRFNVRYRDDKSYPSLAVTLHEEFPRLQVMRGPKRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F  R+C+  VF+      RPCLL  I RCS PC G + +E +
Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSAGVFKRAGQVGRPCLLGYIDRCSAPCVGRVDAETH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            E V +   F+SG       ++ + M QA   ++YE A   RD   AL         +  
Sbjct: 193 REIVDDFCDFMSGQTGRYLRRLEQEMQQAASAQEYERAARLRDDAGALRRAIEKQAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                D  +   ++  A +   +   G+ RG   + +    E T A ++  FL Q Y +
Sbjct: 253 DGTDADVVAFAEDELEAAVAIFYVRAGRVRGQRGWVVDKLDEVTTADLVEQFLTQEYLE 311



 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/374 (26%), Positives = 158/374 (42%), Gaps = 57/374 (15%)

Query: 286 LSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQAL 345
            +   R        P  IL+     +   +        G +V+I VP++G+KR ++E   
Sbjct: 370 PARAPRSDPQGAGIPREILVPALPPDADAVAELLGVARGGRVEIRVPRRGDKRTLLETVE 429

Query: 346 INAHRSHTQKLSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401
            NA ++     +   S        L +  +   LP  P RIE YD S+I G + V  MVV
Sbjct: 430 RNARQALALHRTKRASDLTARSRALAELQEALELPDAPLRIECYDVSNIQGTNVVASMVV 489

Query: 402 VGENGFVKNQYRKFNL----------HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451
             +    K++YR+F++          H      QDD A M   + RRFS+ +        
Sbjct: 490 FEDGLARKSEYRRFSIRGGAGGAGREHGRADAGQDDVASMYETIHRRFSRYLAERSRTGE 549

Query: 452 ----------------------------------HPKKQEYSFPSWPDVVILDGGKGQLS 477
                                                 +   F   P++V++DGG  Q++
Sbjct: 550 LVDIVDSAEDLAADTGVRDGRGRAVTPGAAQPIDPDTGRPRRFAYPPNLVVVDGGPPQVA 609

Query: 478 AAQGVLKKLNVE---NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           AA   L +L ++     + +  +AK  +     E +     E ++L      LY +QR+R
Sbjct: 610 AAARALDELGIDTGPGGVALCGLAKRLE-----EVWLPDSAEPVILPRTSEALYLLQRVR 664

Query: 535 DEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DEAHRFAIT HR++R  A   S LD++ G+G  R++ LL+ FG+V  +  +S E +A + 
Sbjct: 665 DEAHRFAITYHRQKRSAAMVTSALDDVPGLGETRRKALLRQFGSVAKVRAASAEEIAQVP 724

Query: 594 GISKKIACKIYNHF 607
           GI  + A  I    
Sbjct: 725 GIGPRTAAAILTAL 738


>gi|289677231|ref|ZP_06498121.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae FF5]
          Length = 262

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/263 (39%), Positives = 152/263 (57%), Gaps = 3/263 (1%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E EALLLE 
Sbjct: 1   MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
            +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  A+ ++
Sbjct: 61  TLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSAGAIRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  +  FL G 
Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252
           ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  + + N  
Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239

Query: 253 LACIQTCFFHFGQNRGTCTFFLK 275
            AC+       G+  G+  FF  
Sbjct: 240 GACVHLISVRGGRVLGSKNFFPP 262


>gi|269967058|ref|ZP_06181126.1| excinuclease ABC subunit C [Vibrio alginolyticus 40B]
 gi|269828317|gb|EEZ82583.1| excinuclease ABC subunit C [Vibrio alginolyticus 40B]
          Length = 397

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 117/415 (28%), Positives = 195/415 (46%), Gaps = 29/415 (6%)

Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF---SLYHNKNLACIQTCFFH 262
           M  A+ +  +E A   RD++ A+  +Q       + MD            +ACI      
Sbjct: 1   MEVASQQLRFEDAAKFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQENGIACIHILMIR 60

Query: 263 FGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP----CPENILLSEEA-EETSLLEI 317
            G+  G+ + F K    ++  ++   FL Q+Y         P  I+L++E  E+ + ++ 
Sbjct: 61  QGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIILNQELAEDIAPIQK 120

Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPH 377
           +  +  G KV       G + + ++ +  NA  + T K++ +++         +   L  
Sbjct: 121 ALSEVAGRKVHFHTSPTGSRARYLKLSNTNALTAITTKINHKMTINQRFHALRETLELES 180

Query: 378 IPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLER 437
           I  R+E +D SH MG S +   VV    G VK +YR++N+    +   DD A M   LER
Sbjct: 181 IA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYRRYNI--TGITGGDDYAAMGQALER 237

Query: 438 RFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL--NVENRITII 495
           R+S+ +  E+                PD++ +DGGKGQL+ A  ++ +   +   R  +I
Sbjct: 238 RYSKQLDVEK---------------IPDIIFIDGGKGQLNRAHDIISQYWGDWPKRPIMI 282

Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY- 554
            IAKG  R  G+E      G+   L    P L+ IQ +RDE+H  AI  HR +R K    
Sbjct: 283 GIAKGVTRKPGLETLITVDGDEFHLPSDAPALHLIQHIRDESHNHAIAGHRAKRGKTRRT 342

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           S L+ I GIGP R++ LL+  G ++ + R+S E +A + GIS  +A  I+    +
Sbjct: 343 SALEGIEGIGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQALKQ 397


>gi|71894293|ref|YP_278401.1| excinuclease ABC subunit C [Mycoplasma synoviae 53]
 gi|71851081|gb|AAZ43690.1| excinuclease ABC subunit C [Mycoplasma synoviae 53]
          Length = 582

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/618 (20%), Positives = 236/618 (38%), Gaps = 65/618 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PG Y   D    V+YVGKA NL  R+ SY   N ++ +   M   I +  + +
Sbjct: 11  LKNIPKKPGTYLWKDQFDNVIYVGKANNLHNRMNSYFKGNINSFKTYAMFENIYSFDYFI 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSY 121
             +   AL+LE   I + +P++NI+L DDK +PY+ I  K  +     +R S   +   Y
Sbjct: 71  ADSPKAALILEKKYIDQYRPKYNIMLLDDKQYPYLNIKIKDSLEIKQTYRVSKNSEFNIY 130

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP+      +                           L        G    +     ++
Sbjct: 131 YGPYPQSHLFKFVKI-----------------------LQRIFLYNQGLLIKDKPKMYWI 167

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E  +  K+ L   N++    +   M  A    ++E+AI ++  L  +S  +       ++
Sbjct: 168 EKFNILKEILKFKNNDFNNLLKEKMIAAADNLNFEAAIEYQKALEFISQFKEKQIIEISK 227

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI-LSYFLRQFYTDKPCP 300
              + ++  +        F+          F  K      + +  +S FL++FY +K  P
Sbjct: 228 YKNYDVFSFEEKNESIAIFYMLYIYGVQNIFQRKIIENYDSLENIISNFLKEFYKNKALP 287

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST-- 358
           +NI+L  + ++ +L      K       I  P++G    +I+ A  N +  +   L+   
Sbjct: 288 DNIILDYKYKDLNLDLDFKSK-------IIFPQKGINHDLIKLANENNNSGYESYLNQKI 340

Query: 359 --EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             E     + K+   +  L      I I+DNSH    + +G  +   +     + Y  FN
Sbjct: 341 ILEQHKLNLWKNLASELFLD-KLNSIFIFDNSHFNNSNPIGSCICYTKAEKNPHLYASFN 399

Query: 417 --LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
                 ++K + D   M   + +   +                + F +  D+ ILDG   
Sbjct: 400 HEKEQKELKIKSDIEYMYHSVYKYLKR---------------NHLFITKDDIFILDGSSM 444

Query: 475 QLSAAQGVLKKLNVENR----ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI 530
           Q+  AQ  +   N +      I +  + K            +   + + + +      F+
Sbjct: 445 QIKFAQKAILDFNKDFNANLEIKLFGLVKDKNHKTN---LMINSKDEI-IKISSESFLFL 500

Query: 531 QRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            ++++E   FA    +K +      S L +I GI    +  LL+ FGT   I  +S E L
Sbjct: 501 SKIQEEVDLFAKKRMQKNQINLTFKSRLIQIKGISYKTEEKLLKHFGTFANIYNASFEEL 560

Query: 590 ASIEGISKKIACKIYNHF 607
             +   +K IA KI  + 
Sbjct: 561 QKVT--NKSIAQKIKENL 576


>gi|312198682|ref|YP_004018743.1| excinuclease ABC, C subunit [Frankia sp. EuI1c]
 gi|311230018|gb|ADP82873.1| excinuclease ABC, C subunit [Frankia sp. EuI1c]
          Length = 835

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/300 (33%), Positives = 149/300 (49%), Gaps = 7/300 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
            +PE PGVY+  D  GRVLYVGKA NL+ R+ +Y         R   M++  +++ +TV 
Sbjct: 13  SIPETPGVYRFRDPHGRVLYVGKAKNLRARLNNYFTDVFALHPRTRTMVTTASSVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+P + +T + + P L   R        YFG
Sbjct: 73  STEVEALALEYTWIKEYDPRFNVRYRDDKSYPSLAVTLQEEFPRLQVMRGPKRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P+A   A+ +T++ L R F  R+C+  VF+      RPCLL  I RCS PC G ++ +++
Sbjct: 133 PYAHAWAIRETLDLLLRVFPARTCSTGVFKRAGQVGRPCLLGYIDRCSAPCVGRVTPDEH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
            + V +   F++G       ++   M  A   +DYE A   RD   AL         +  
Sbjct: 193 RQIVDDFCDFMAGQTGRFLRRLEDEMRAAADAQDYERAARLRDDAGALRRAMEKQAVVLA 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D  +   ++  A +Q  +   G+ RG   + +   ++ T A ++  FL Q Y   
Sbjct: 253 DGTDADVVAFAQDELEAAVQVFYVRGGRVRGQRGWVVDKLADVTTADLVEQFLTQEYLGD 312



 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 154/344 (44%), Gaps = 45/344 (13%)

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
               P  +L+ E   +   +     +  G +V++ VP++G+KR ++E    NA ++    
Sbjct: 371 HADIPREVLVPELPTDADAVGELLARYRGGRVEVRVPQRGDKRTLMETVERNAKQALVLH 430

Query: 356 LSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
            +   S      + L +  +   L   P RIE +D SH  G   V  MVV  +    K++
Sbjct: 431 RTKRASDLTARSLALAELQETLGLAEAPLRIECFDVSHTQGQDVVASMVVFEDGVARKSE 490

Query: 412 YRKFNLHP---NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP--------------- 453
           YR+F +      D   QDD A M   + RRFS+ +         P               
Sbjct: 491 YRRFTIRGAARRDGNEQDDTASMYETVSRRFSRYLAELSRTGELPGTDQDAPADGSAGAA 550

Query: 454 --------------KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE---NRITIIS 496
                           +   F   P++V++DGG  Q++AA   L  L ++     + +  
Sbjct: 551 AGAEGTDGPEPLVVDGRPRRFAYPPNLVVVDGGPPQVAAAARALADLGIDAGPGGVALCG 610

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           +AK  +     E +     + ++L      LY +QR+RDEAHRFAIT HR++R  +  S 
Sbjct: 611 LAKRLE-----EVWLPDDPDPVILPRTSEALYLLQRVRDEAHRFAITFHRQKRSASMTSS 665

Query: 557 -LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
            LD + G+G  R++ LL++FG+V  +  +S E ++++ GI  + 
Sbjct: 666 LLDGVPGLGETRRKALLKTFGSVAKLRAASAEEISTVPGIGPRT 709


>gi|153820417|ref|ZP_01973084.1| excinuclease ABC, subunit C [Vibrio cholerae NCTC 8457]
 gi|126509040|gb|EAZ71634.1| excinuclease ABC, subunit C [Vibrio cholerae NCTC 8457]
          Length = 385

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 115/400 (28%), Positives = 188/400 (47%), Gaps = 26/400 (6%)

Query: 218 AIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD 277
             + +     +   Q  +D     +D         +ACI       G+  G+ + F K  
Sbjct: 4   KRVTKSSHRRVQEQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIP 63

Query: 278 SESTNAQILSYFLRQFYTD----KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVP 332
           S+++  ++   FL Q+Y      +  P  I+L+    EET  L+I+  +  G KV   V 
Sbjct: 64  SDTSQVEVFESFLSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVN 123

Query: 333 KQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMG 392
             G + + ++ A  NA  + T K++ +++     K   ++  +  I  R+E +D SH MG
Sbjct: 124 PTGTRGRYLKLANTNALTAITTKMNHKMTISQRFKALQEELGMDAIT-RMECFDISHTMG 182

Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452
            S +   VV  + G +K +YR++N+    +   DD A M  VLERR+S+ +         
Sbjct: 183 ESTMASCVVFNQEGPLKQEYRRYNI--TGITGGDDYAAMAQVLERRYSKQLD-------- 232

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKF 510
                      PD++ +DGGKGQL+ A  ++     +      II IAKG  R  G+E  
Sbjct: 233 -------SSKIPDIIFIDGGKGQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETL 285

Query: 511 FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKR 569
               G+   L    P L+ IQ +RDE+H  AI  HR +R K    S L+ I G+GP R++
Sbjct: 286 ITIDGDEFHLPSDAPALHLIQHIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQ 345

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            LL+  G ++ + R+S E +A + GIS  +A  IY    +
Sbjct: 346 ALLKYLGGMQELKRASVEEIAKVPGISHALAENIYQALKQ 385


>gi|257484572|ref|ZP_05638613.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 255

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 100/255 (39%), Positives = 149/255 (58%), Gaps = 3/255 (1%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D   ++LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E EALLLE 
Sbjct: 1   MFDAEAKLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
            +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  A+ ++
Sbjct: 61  TLIKEWRPPYNILLRDDKSYPYVFLSDG-NYPRLSIHRGTKKAKGRYFGPYPSAGAIRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  +  FL G 
Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252
           ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  + + N  
Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239

Query: 253 LACIQTCFFHFGQNR 267
            AC+       G+  
Sbjct: 240 GACVHLISVRGGRVL 254


>gi|229542083|ref|ZP_04431143.1| Excinuclease ABC C subunit domain protein [Bacillus coagulans 36D1]
 gi|229326503|gb|EEN92178.1| Excinuclease ABC C subunit domain protein [Bacillus coagulans 36D1]
          Length = 361

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 99/349 (28%), Positives = 164/349 (46%), Gaps = 15/349 (4%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y M    G ++YVGKA  L+ R++SY   + H  + T ++ +I ++ + VT T
Sbjct: 12  LPEEPGCYLMKSREGEIIYVGKAKKLKNRVRSYFTGS-HDEKTTQLVGEIFDLEWIVTAT 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EAL+LE N+IK+ +P++NI+L+DDKS+P+I IT   + P L   R++   +G YFGPF
Sbjct: 71  NTEALVLEMNLIKQYRPKYNIMLKDDKSYPFIKIT-DERHPQLILTREAGRDKGKYFGPF 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A  +T   L R + L           TRPCL +Q+  C G C  E+  E+Y E + 
Sbjct: 130 PNARAAAETKKVLDRLYPL----RRCPESSTRPCLYYQLGLCIGTCAREVGEEEYKEQIR 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---M 242
           +   F  GG   + + + + M QA  K D+E A   ++++  +       + + N     
Sbjct: 186 KIVHFFHGGYRAVLKDMKKEMLQAAKKLDFEKAEQLKEQIMQIEVTMEDQNIVLNDPVSR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F         C+   +   G+       F    S+      L +    +         
Sbjct: 246 DIFGFAVQDGFMCVHVFYMRDGRIIEREVIFRPIGSKEPKRAFLDFLQHFYGESGNTLPK 305

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
            +L   A      EI          +I  PK+G+K+++++ A  NA  +
Sbjct: 306 EMLIPAAVGKEAAEICVS------ARIVQPKRGQKKEMVQLATKNARIA 348


>gi|45259350|emb|CAF32984.1| UvrC protein [Pseudomonas putida]
          Length = 248

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 139/233 (59%), Gaps = 1/233 (0%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+KR+ SY        +   ++ +I  +  T+T  E E
Sbjct: 17  RPGVYRMFDAEARLLYVGKAKNLKKRLASYFRKTGLAPKTAALVGRIAQVETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE N+IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQNLIKEWRPPYNILLRDDKSYPYVFLSDG-DFPRLGIHRGAKKAKGRYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+ F +R C DS + +RTRPCL +QIKRC GPC G +  ++Y + +  + 
Sbjct: 136 GAIRESLSLLQKAFSVRQCEDSYYANRTRPCLQYQIKRCKGPCVGLVDKDEYADDIRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
            FL G +  L  ++   M +A +  ++E A   RD++A L  +Q+        
Sbjct: 196 MFLEGRSQQLGNELNAEMEKAAMALNFEKAAELRDQIALLRRVQDQQYIEGGT 248


>gi|551931|gb|AAA25822.1| uvrC [Pseudomonas fluorescens]
          Length = 232

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 91/217 (41%), Positives = 133/217 (61%), Gaps = 1/217 (0%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PGVY+M D   R+LYVGKA NL+ R+ SY        +   ++++I  I  T+T  E E
Sbjct: 17  RPGVYRMFDSDARLLYVGKAKNLKNRLSSYFRKTGQAPKTAALVARIAQIETTITANETE 76

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           ALLLE  +IK  +P +NILLRDDKS+PY+ ++D    P    HR +   +G YFGP+ S 
Sbjct: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDG-DFPRFSIHRGAKRQKGKYFGPYPSA 135

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            A+ ++++ LQ+TF +R C DS +++RTRPCL +QIKRC  PC G +  E Y E V  + 
Sbjct: 136 GAIRESLSLLQKTFMVRQCEDSYYKNRTRPCLQYQIKRCKAPCVGLVEPEVYAEDVRHSV 195

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225
            FL G ++ L ++++  M  A    D+E A   RD++
Sbjct: 196 MFLEGRSNALTDELSTAMEAAASTLDFEKAAELRDQI 232


>gi|183601616|ref|ZP_02962986.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241190885|ref|YP_002968279.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196291|ref|YP_002969846.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219222|gb|EDT89863.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249277|gb|ACS46217.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250845|gb|ACS47784.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295793874|gb|ADG33409.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 796

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  G+V+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 56  KTGDIPAQPGVYKWRDGDGQVIYVGKAKNLRNRLSNYFQPLRQLHPRTQTMVLTARSLEW 115

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+EAL LE   IK   PRFN+  RDDK++PY+ ++   + P ++  R        
Sbjct: 116 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLALSIGEEYPRIWVTRSRKRRDTR 175

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           Y+GP+A V  + K+++ L RTF +R+C D+ FR      RPCLL  I +CS PC G I+ 
Sbjct: 176 YYGPYAKVWDLRKSLDGLLRTFPVRTCTDANFRKAQLTNRPCLLASIGKCSAPCVGRITP 235

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           + +     +    L+GG   +   K+   M +A+ + D+E A   RD +  LS +   N 
Sbjct: 236 QDHKRLCEQLVGVLTGGIGKSYVAKLTAAMKEASAELDFEKAARLRDEIQMLSTVVEQNA 295

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            + ++    D F +  ++  A +   F   G  RG   + ++   +  +A+++S  + Q 
Sbjct: 296 VVLDQDVDADVFGIASDELEASVHAFFVRSGSIRGERNWSVERIEDVDDAELISDLIMQV 355

Query: 294 YTD 296
           Y++
Sbjct: 356 YSE 358



 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 103/347 (29%), Positives = 156/347 (44%), Gaps = 37/347 (10%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +L+S        LE    +  G  V I  P +G KR+++E+A  NA ++  +  
Sbjct: 456 APVPRQVLVSVMPARADDLEQYLRRLRGGAVSIGTPARGNKRQLLERAEQNAQQALQRSK 515

Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411
            + IS        + D      L   P RIE YD S+ +G    V  MVV  +    K++
Sbjct: 516 MSRISDISARTTAMNDVADALGLSQAPLRIECYDISNTVGGAFQVASMVVFEDGMARKSE 575

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFS----------------QLIKNEE------- 447
           YR+F +   D K   DD   +   L RRF                 +  +  E       
Sbjct: 576 YRRFAIRGADGKGAVDDLNALYETLTRRFKHGNIAGDTGESMDNEKRASQEGELESAEQV 635

Query: 448 -NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506
                        F   P++V++DGGK Q+ AA   L+   V + + +  +AK  +    
Sbjct: 636 QQEIVQQNTDRRHFAYKPNLVVVDGGKPQVMAAAKALEDCGVTD-VAVCGLAKRME---- 690

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565
            E +       ++L      +Y +QR+RDE+HRFAI  HR+ R+K A  S LDEI GIGP
Sbjct: 691 -EVWVPDDDYPVILKRSSEGMYLLQRVRDESHRFAINYHRQTRRKGALRSALDEIPGIGP 749

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             ++ LL  FG+V+ + ++S E L S++G+    A  IY   H N S
Sbjct: 750 TFQKRLLNHFGSVRRMRQASLEELESVKGVGHAKARAIYEALHDNAS 796


>gi|297171307|gb|ADI22312.1| nuclease subunit of the excinuclease complex [uncultured
           actinobacterium HF0500_01C15]
          Length = 329

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/298 (29%), Positives = 138/298 (46%), Gaps = 5/298 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
           ++   PGVY   D  GRVLYVGKA +L+ R++SY     +   +   ++ +I+ +   V 
Sbjct: 10  KLTTKPGVYIFRDTGGRVLYVGKAKSLRTRVRSYFHREADLGAKNRKLVREIDALETIVV 69

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E EAL+LEAN+IK  +PRFNILLRDDK +PYI +T     P +Y  R  +  Q  YFG
Sbjct: 70  GSESEALILEANLIKEHRPRFNILLRDDKQYPYIKVTVGEPFPRVYVTRHVANDQSRYFG 129

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182
           P+ SV  + + +  ++    +RSC   + +    R CL + I RC  PC G  S   Y  
Sbjct: 130 PYTSVGPMRQALEVVKHLHTVRSCRYDLPKDSPERACLDYHIGRCKAPCVGLQSETDYGA 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI---Y 239
            + +  K L G    +++ +   M  A+   D+E A   RD LA L  +           
Sbjct: 190 MIDDILKILEGKTEEIRDTVEERMESASALLDFERAAKLRDALAGLDSLAREQRVQRTKG 249

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
              D   +  +  L          G      +       + +++ +L   + + Y  +
Sbjct: 250 GSFDIVGMARDGELGAGVVLKVRSGLLLSRDSLRFVRIFQESDSDLLESLISRHYLGR 307


>gi|260877708|ref|ZP_05890063.1| UvrABC system protein C [Vibrio parahaemolyticus AN-5034]
 gi|308090514|gb|EFO40209.1| UvrABC system protein C [Vibrio parahaemolyticus AN-5034]
          Length = 385

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/401 (26%), Positives = 184/401 (45%), Gaps = 26/401 (6%)

Query: 217 SAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT 276
                   +  +   Q  ++   + MD         +ACI       G+  G+ + F K 
Sbjct: 3   KFRDQIQAIRRVQEQQYVSEDSMDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKI 62

Query: 277 DSESTNAQILSYFLRQFYTDKP----CPENILLSEEA-EETSLLEISFFKQYGYKVKITV 331
              ++  ++   FL Q+Y         P  I+L++E  ++   ++ +  +  G KV    
Sbjct: 63  PQNTSQQEVFDSFLTQYYLSHNEARTIPSRIILNQELADDLEPIQKALSEVAGRKVHFHT 122

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391
              G + + ++ +  NA  + T K++ +++     K   +   +     R+E +D SH M
Sbjct: 123 SPTGARGRYLKLSNTNALTAITTKINHKMTINQRFKALRETLGME-SIMRMECFDISHTM 181

Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451
           G S +   VV    G VK +YR++N+    +   DD A M   LERR+S+ +  E+    
Sbjct: 182 GESTIASCVVFNNEGPVKQEYRRYNI--TGITGGDDYAAMGQALERRYSKQLDVEK---- 235

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEK 509
                       PD++ +DGGKGQL+ A  ++ +   +   R  +I IAKG  R  G+E 
Sbjct: 236 -----------IPDIIFIDGGKGQLNRAHEIIAQYWGDWPKRPIMIGIAKGVTRKPGLET 284

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRK 568
                GE   L    P L+ IQ +RDE+H  AI  HR +R K    S L+ I G+GP R+
Sbjct: 285 LITVDGEEFNLPSDAPALHLIQHIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRR 344

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL+  G ++ + R+S E +A + GIS  +A  I+    +
Sbjct: 345 QALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQALKQ 385


>gi|153827725|ref|ZP_01980392.1| excinuclease ABC, subunit C [Vibrio cholerae MZO-2]
 gi|149737799|gb|EDM52704.1| excinuclease ABC, subunit C [Vibrio cholerae MZO-2]
          Length = 374

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 115/392 (29%), Positives = 186/392 (47%), Gaps = 26/392 (6%)

Query: 226 AALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQI 285
             +   Q  +D     +D         +ACI       G+  G+ + F K  S+++  ++
Sbjct: 1   RRVQEQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEV 60

Query: 286 LSYFLRQFYTD----KPCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKI 340
              FL Q+Y      +  P  I+L+    EET  L+I+  +  G KV   V   G + + 
Sbjct: 61  FESFLSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRY 120

Query: 341 IEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
           ++ A  NA  + T K++ +++     K   ++  +  I  R+E +D SH MG S +   V
Sbjct: 121 LKLANTNALTAITTKINHKMTISQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCV 179

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460
           V  + G +K +YR++N+    +   DD A M  VLERR+S+ +                 
Sbjct: 180 VFNQEGPLKQEYRRYNI--TGITGGDDYAAMAQVLERRYSKQLD---------------S 222

Query: 461 PSWPDVVILDGGKGQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEAL 518
              PD++ +DGGKGQL+ A  ++     +      II IAKG  R  G+E      G+  
Sbjct: 223 SKIPDIIFIDGGKGQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEF 282

Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGT 577
            L    P L+ IQ +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G 
Sbjct: 283 HLPSDAPALHLIQHIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGG 342

Query: 578 VKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           ++ + R+S E +A + GIS  +A  IY    +
Sbjct: 343 MQELKRASVEEIAKVPGISHALAENIYQALKQ 374


>gi|262190259|ref|ZP_06048531.1| excinuclease ABC subunit C [Vibrio cholerae CT 5369-93]
 gi|262033854|gb|EEY52322.1| excinuclease ABC subunit C [Vibrio cholerae CT 5369-93]
          Length = 342

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 110/338 (32%), Positives = 176/338 (52%), Gaps = 9/338 (2%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y E VH  + FL G
Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            ++ +   +   M QA+ +  +E A   RD++ A+  +Q       +    +D       
Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLS 306
             +ACI       G+  G+ + F K  S+++  ++   FL Q+Y      +  P  I+L+
Sbjct: 240 NGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILN 299

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
               E +    +          +++        + E  
Sbjct: 300 RGLTEETEALQTRSVNLQGAKSLSMSIHWYAWPLSETR 337


>gi|219683848|ref|YP_002470231.1| excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219621498|gb|ACL29655.1| excinuclease ABC, C subunit [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 759

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  G+V+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 19  KTGDIPAQPGVYKWRDGDGQVIYVGKAKNLRNRLSNYFQPLRQLHPRTQTMVLTARSLEW 78

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+EAL LE   IK   PRFN+  RDDK++PY+ ++   + P ++  R        
Sbjct: 79  TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLALSIGEEYPRIWVTRSRKRRDTR 138

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           Y+GP+A V  + K+++ L RTF +R+C D+ FR      RPCLL  I +CS PC G I+ 
Sbjct: 139 YYGPYAKVWDLRKSLDGLLRTFPVRTCTDANFRKAQLTNRPCLLASIGKCSAPCVGRITP 198

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           + +     +    L+GG   +   K+   M +A+ + D+E A   RD +  LS +   N 
Sbjct: 199 QDHKRLCEQLVGVLTGGIGKSYVAKLTAAMKEASAELDFEKAARLRDEIQMLSTVVEQNA 258

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            + ++    D F +  ++  A +   F   G  RG   + ++   +  +A+++S  + Q 
Sbjct: 259 VVLDQDVDADVFGIASDELEASVHAFFVRSGSIRGERNWSVERIEDVDDAELISDLIMQV 318

Query: 294 YTD 296
           Y++
Sbjct: 319 YSE 321



 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 103/347 (29%), Positives = 156/347 (44%), Gaps = 37/347 (10%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +L+S        LE    +  G  V I  P +G KR+++E+A  NA ++  +  
Sbjct: 419 APVPRQVLVSVMPARADDLEQYLRRLRGGAVSIGTPARGNKRQLLERAEQNAQQALQRSK 478

Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411
            + IS        + D      L   P RIE YD S+ +G    V  MVV  +    K++
Sbjct: 479 MSRISDISARTTAMNDVADALGLSQAPLRIECYDISNTVGGAFQVASMVVFEDGMARKSE 538

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFS----------------QLIKNEE------- 447
           YR+F +   D K   DD   +   L RRF                 +  +  E       
Sbjct: 539 YRRFAIRGADGKGAVDDLNALYETLTRRFKHGNIAGDTGESMDNEKRASQEGELESAEQV 598

Query: 448 -NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506
                        F   P++V++DGGK Q+ AA   L+   V + + +  +AK  +    
Sbjct: 599 QQEIVQQNTDRRHFAYKPNLVVVDGGKPQVMAAAKALEDCGVTD-VAVCGLAKRME---- 653

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565
            E +       ++L      +Y +QR+RDE+HRFAI  HR+ R+K A  S LDEI GIGP
Sbjct: 654 -EVWVPDDDYPVILKRSSEGMYLLQRVRDESHRFAINYHRQTRRKGALRSALDEIPGIGP 712

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             ++ LL  FG+V+ + ++S E L S++G+    A  IY   H N S
Sbjct: 713 TFQKRLLNHFGSVRRMRQASLEELESVKGVGHAKARAIYEALHDNAS 759


>gi|289178624|gb|ADC85870.1| Excinuclease ABC subunit C [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 841

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  G+V+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 101 KTGDIPAQPGVYKWRDGDGQVIYVGKAKNLRNRLSNYFQPLRQLHPRTQTMVLTARSLEW 160

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+EAL LE   IK   PRFN+  RDDK++PY+ ++   + P ++  R        
Sbjct: 161 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLALSIGEEYPRIWVTRSRKRRDTR 220

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           Y+GP+A V  + K+++ L RTF +R+C D+ FR      RPCLL  I +CS PC G I+ 
Sbjct: 221 YYGPYAKVWDLRKSLDGLLRTFPVRTCTDANFRKAQLTNRPCLLASIGKCSAPCVGRITP 280

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           + +     +    L+GG   +   K+   M +A+ + D+E A   RD +  LS +   N 
Sbjct: 281 QDHKRLCEQLVGVLTGGIGKSYVAKLTAAMKEASAELDFEKAARLRDEIQMLSTVVEQNA 340

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            + ++    D F +  ++  A +   F   G  RG   + ++   +  +A+++S  + Q 
Sbjct: 341 VVLDQDVDADVFGIASDELEASVHAFFVRSGSIRGERNWSVERIEDVDDAELISDLIMQV 400

Query: 294 YTD 296
           Y++
Sbjct: 401 YSE 403



 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 103/347 (29%), Positives = 156/347 (44%), Gaps = 37/347 (10%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +L+S        LE    +  G  V I  P +G KR+++E+A  NA ++  +  
Sbjct: 501 APVPRQVLVSVMPARADDLEQYLRRLRGGAVSIGTPARGNKRQLLERAEQNAQQALQRSK 560

Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411
            + IS        + D      L   P RIE YD S+ +G    V  MVV  +    K++
Sbjct: 561 MSRISDISARTTAMNDVADALGLSQAPLRIECYDISNTVGGAFQVASMVVFEDGMARKSE 620

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFS----------------QLIKNEE------- 447
           YR+F +   D K   DD   +   L RRF                 +  +  E       
Sbjct: 621 YRRFAIRGADGKGAVDDLNALYETLTRRFKHGNIAGDTGESMDNEKRASQEGELESAEQV 680

Query: 448 -NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506
                        F   P++V++DGGK Q+ AA   L+   V + + +  +AK  +    
Sbjct: 681 QQEIVQQNTDRRHFAYKPNLVVVDGGKPQVMAAAKALEDCGVTD-VAVCGLAKRME---- 735

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565
            E +       ++L      +Y +QR+RDE+HRFAI  HR+ R+K A  S LDEI GIGP
Sbjct: 736 -EVWVPDDDYPVILKRSSEGMYLLQRVRDESHRFAINYHRQTRRKGALRSALDEIPGIGP 794

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             ++ LL  FG+V+ + ++S E L S++G+    A  IY   H N S
Sbjct: 795 TFQKRLLNHFGSVRRMRQASLEELESVKGVGHAKARAIYEALHDNAS 841


>gi|311031409|ref|ZP_07709499.1| excinuclease ABC subunit C [Bacillus sp. m3-13]
          Length = 427

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/454 (24%), Positives = 201/454 (44%), Gaps = 35/454 (7%)

Query: 164 IKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223
           + +C  PC   +S E   + V    +FL+GG   +K ++   M +A+   ++E A   RD
Sbjct: 1   MGQCLAPCVEHVSEETNKQMVDGIVRFLNGGYKEVKTELTEKMMKASENLEFERAQEFRD 60

Query: 224 RLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280
           ++  +           N     D F    +K   C+Q  F   G+            +E 
Sbjct: 61  QIINIEATMEKQKMEMNDFVDRDVFGFAFDKGWMCVQVFFIRQGKLIERDVSLFPIYNEP 120

Query: 281 TNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340
               +          +   P+ ++L  + +     E+           +  P++G+K+++
Sbjct: 121 EEDFLTFLGQFYSKQNHFVPKEVMLPSQIDLPVAQELLQT-------NVLQPQRGKKKQL 173

Query: 341 IEQALINAH----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV 396
           ++ A  NA        +     E      +++  K   +   P RIE +DNS+I G   V
Sbjct: 174 VDLANKNAKVALGEKFSLIERDESRTIKAVENLGKILGI-ITPHRIEAFDNSNIQGTDPV 232

Query: 397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQ 456
             MVV  +    K +YRK+      V+  DD   MR V+ RR+++++K            
Sbjct: 233 SAMVVFIDGKPEKREYRKYKTKS--VQGPDDYESMREVVRRRYTRVLKE----------- 279

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGE 516
                  PD++++DG KG +SA + VL +  ++  + I+ +AK  K          ++  
Sbjct: 280 ---SLPLPDLIVIDGAKGHMSAVRDVL-ENELDLFVPIVGLAKDDKHRTSN-LLAGEEAM 334

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSF 575
            + L       Y +QR++DE HRFAIT HR+ R K+ + S LDEI G+G  RK+ L++ F
Sbjct: 335 IVPLERTSQEFYLLQRIQDEVHRFAITFHRQIRSKSVFQSILDEITGVGATRKKALMKHF 394

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           G+V  +  ++ E + + + I K IA +I+    +
Sbjct: 395 GSVSKMKEATVEEIQAAK-IPKPIAEEIFKKLRE 427


>gi|283850732|ref|ZP_06368019.1| excinuclease ABC, C subunit [Desulfovibrio sp. FW1012B]
 gi|283573975|gb|EFC21948.1| excinuclease ABC, C subunit [Desulfovibrio sp. FW1012B]
          Length = 695

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/297 (30%), Positives = 143/297 (48%), Gaps = 4/297 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             +  P  PGVY M    G++LYVGKA NL+ R+ SY      HT +   ++ +I  +  
Sbjct: 5   EPKNFPTSPGVYLMKGGKGKILYVGKAKNLRARLGSYFRGETGHTVKTAALVGRIEAVDV 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E EALLLE+++IK+ +PR+N++L+DDK++    +  +   P L   R       +
Sbjct: 65  LLTASEKEALLLESSLIKKHRPRYNVVLKDDKNYILFKLDKRSDFPRLAFTRRVERDGAT 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF S  A   T   L R F LR C D    +R RPCL + I +C  PC   +  ++Y
Sbjct: 125 YFGPFTSAAAARTTWKELGRVFPLRKCGDRTLHNRVRPCLYYFIGQCLAPCVLPVEPQEY 184

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
           M  V   + FL+G +  +   + + M +A  +  +E A   RD L A+        ++  
Sbjct: 185 MTLVRRVEAFLTGRSAEILRAVQKEMEEAAERLAFEQAAKLRDLLKAMRRTVEGQATVLT 244

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
           R   MD  ++   ++   +   F   G+     TFF      +    +    L QFY
Sbjct: 245 RLVDMDVVNMAATEHGVGLCVLFVRQGRLLDRKTFFFPGVEAAEADAVAVTALVQFY 301



 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 124/274 (45%), Gaps = 30/274 (10%)

Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHI 390
            P+  E+R+++E A +NA R+  +          IL    +KF LP +  RIE  D SH+
Sbjct: 432 PPRGREERQLLEMAAVNARRAAEEAAKAAEGD--ILPSLARKFGLPALS-RIEAVDVSHL 488

Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN 450
            G      MVV  +    K+ YR +     +  + D  A+     +R             
Sbjct: 489 GGKGVRVGMVVFEDGTPQKSDYRAYAFPELEGTSDDYLALATFAAKR------------- 535

Query: 451 FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME-- 508
                   S P WPD++++DGGKGQL A    L +  V     + SIAKG +RS      
Sbjct: 536 ------AASGPPWPDLLLIDGGKGQLEAVSRSLTEAGVAGAFALASIAKGERRSQNEMDD 589

Query: 509 -KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK---AAYSPLDEINGIG 564
             +   +   L L    P L F+QR+RD  H F+I   R+RR +   +  S + E+ G+G
Sbjct: 590 VIYVPGRKNPLSLRSGSPELLFLQRVRDTVHDFSIG--RQRRARNTASLQSTVLELPGVG 647

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           P   RLL ++FG+V  +  +    + +  G+  +
Sbjct: 648 PKTARLLWEAFGSVTAMRAAGAGEIMAKTGLGPR 681


>gi|293364958|ref|ZP_06611675.1| excision endonuclease subunit UvrC [Streptococcus oralis ATCC
           35037]
 gi|291316408|gb|EFE56844.1| excision endonuclease subunit UvrC [Streptococcus oralis ATCC
           35037]
          Length = 448

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 105/453 (23%), Positives = 195/453 (43%), Gaps = 37/453 (8%)

Query: 168 SGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAA 227
                 +     +     E   FL G +  + + +   M  A    ++E A  +RD + A
Sbjct: 1   MAHTICKKDEAYFKSMAQEVSDFLKGQDDKIIDDLKGKMAVAAQSMEFERAAEYRDLIQA 60

Query: 228 LSHIQNHNDSI---YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ 284
           +  ++     +       D F  Y +K   C+Q  F   G+            ++     
Sbjct: 61  IGTLRTKQRVMAKDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDF 120

Query: 285 ILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
           +              P  +L+ ++ +E ++  +   K          P++GEK++++  A
Sbjct: 121 LTYVGQFYQEKSHLVPNEVLIPQDIDEEAVKALVDTKILK-------PQRGEKKQLVNLA 173

Query: 345 LINAH----RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMV 400
           + NA     +       +    Q  +++  +   +P    RIE +DNS+IMG S V  MV
Sbjct: 174 IKNARVSLEQKFNLLEKSVEKTQGAIENLGRLLQIPTPV-RIESFDNSNIMGTSPVSAMV 232

Query: 401 VVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSF 460
           V       K  YRK+ +    V   DD A MR V+ RR+ ++ +                
Sbjct: 233 VFVNGKPSKKDYRKYKIKT--VVGPDDYASMREVIRRRYGRVQREG-------------- 276

Query: 461 PSWPDVVILDGGKGQLSAAQG-VLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALV 519
            + PD++++DGG+GQ++ A+  + ++L ++  I I  + K  K     E  F    E + 
Sbjct: 277 LTPPDLIVIDGGQGQVNIAKQVIQEELGLD--IPIAGLQKNDKHQT-HELLFGDPLEVVE 333

Query: 520 LNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTV 578
           L+      + +QR++DE HRFAIT HR+ R K ++S  LD I G+GP RK+ L++ F ++
Sbjct: 334 LSRNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSL 393

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
             I  +S + +  + G+ + +A  +    +   
Sbjct: 394 AKIKEASVDEIVEV-GVPRAVAEAVQRKLNPQE 425


>gi|330950409|gb|EGH50669.1| excinuclease ABC subunit C [Pseudomonas syringae Cit 7]
          Length = 250

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 99/250 (39%), Positives = 146/250 (58%), Gaps = 3/250 (1%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E EALLLE 
Sbjct: 1   MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
            +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  A+ ++
Sbjct: 61  TLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSAGAIRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  +  FL G 
Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--YNRMDCFSLYHNKN 252
           ++ L +++  +M +A +  D+E A   RD++A L  +Q+          +D  + + N  
Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQDQQSMDGGTGDVDVVAAFVNPG 239

Query: 253 LACIQTCFFH 262
            AC+      
Sbjct: 240 GACVHLISVR 249


>gi|289626299|ref|ZP_06459253.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
          Length = 261

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 104/278 (37%), Positives = 150/278 (53%), Gaps = 19/278 (6%)

Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394
           G + +  + A+ NA ++ T +L+         +   K   L   P R+E YD SH  G +
Sbjct: 1   GTRARWQQMAVTNAEQALTARLANRQHVASRFEALAKVLGLEDPPMRLECYDISHSSGEA 60

Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK 454
            V   VV G  G +K+ YR+FN+    V   DD A M   L RR+S++   E  L     
Sbjct: 61  TVASCVVFGPEGPIKSDYRRFNIEG--VTAGDDYAAMHQALTRRYSRIKAGEGKL----- 113

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
                    PDV+++DGGKGQ+S A+ VL +L V + I ++ +AKG  R AG E  ++  
Sbjct: 114 ---------PDVLLVDGGKGQMSMARDVLNELQVPDLI-LLGVAKGTTRKAGFETLYLND 163

Query: 515 G-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLL 572
                 L    P L+ IQ++RDEAHRFAIT HR RR K    S L+ + G+GP R+R LL
Sbjct: 164 AAHEFTLPGDSPALHLIQQIRDEAHRFAITGHRARRGKTRRTSTLEGVAGVGPTRRRDLL 223

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           + FG ++ +SR+S + +A   GISKK+A  IY + H  
Sbjct: 224 KHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 261


>gi|269963930|ref|ZP_06178241.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831330|gb|EEZ85478.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 358

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 109/376 (28%), Positives = 179/376 (47%), Gaps = 26/376 (6%)

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP--- 298
           MD         +ACI       G+  G+ + F K    ++  ++   FL Q+Y       
Sbjct: 1   MDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEAR 60

Query: 299 -CPENILLSEEAEET-SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
             P  I+L++E       ++ +  +  G KV+      G + + ++ +  NA  + T K+
Sbjct: 61  TIPSRIILNQELGGDIEPIQQALSEVAGRKVQFHSSPTGSRGRYLKLSNTNALTAITTKI 120

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + +++     K   +   +  I  R+E +D SH MG S +   VV    G VK +YR++N
Sbjct: 121 NHKMTINQRFKALREVLGMETIA-RMECFDISHTMGESTIASCVVFNSEGPVKQEYRRYN 179

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M   LERR+S+ +  E+                PD++ +DGGKGQL
Sbjct: 180 I--TGITGGDDYAAMGQALERRYSKQLDVEK---------------IPDIIFIDGGKGQL 222

Query: 477 SAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           + A  ++ +   +   R T+I IAKG  R  G+E      GE   L    P L+ IQ +R
Sbjct: 223 NRAHEIISQYWGDWPKRPTMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIR 282

Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + 
Sbjct: 283 DESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQALLKYMGGLQELKRASVEEIAKVP 342

Query: 594 GISKKIACKIYNHFHK 609
           GIS  +A  I+    +
Sbjct: 343 GISHSLAEIIFQALKQ 358


>gi|239906770|ref|YP_002953511.1| UvrABC system protein C [Desulfovibrio magneticus RS-1]
 gi|239796636|dbj|BAH75625.1| UvrABC system protein C [Desulfovibrio magneticus RS-1]
          Length = 691

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/317 (28%), Positives = 144/317 (45%), Gaps = 5/317 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             +  P  PGVY M    G++LYVGKA NL+ R+ SY  ++   T +   +++++  +  
Sbjct: 5   EPKNFPMSPGVYLMKGARGKILYVGKAKNLRSRLSSYFRNDAGLTVKTAALVAKVEGVDV 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T +E EALLLE+++IK+ +PR+NI+L+DDK++    +  +   P L   R       +
Sbjct: 65  LLTASEKEALLLESSLIKKHRPRYNIVLKDDKNYILFKLDKRSPFPRLAFTRRVERDGAA 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF S  A   T   L R F LR C D    +R RPCL   I +C  PC   +   +Y
Sbjct: 125 YFGPFTSAAAARATWKELGRAFPLRKCGDRAMANRVRPCLYHSIGQCLAPCVLAVDPGEY 184

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V   + FL+G +  +   +   M QA     +E A   RD L A+        ++  
Sbjct: 185 AALVRRVEAFLTGRSAEVLRAVEHEMEQAAESLAFEKAAGLRDLLRAMKKTVEGQATVLT 244

Query: 241 R---MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLK-TDSESTNAQILSYFLRQFYTD 296
           R   +D   L        +   F   G+     TFF     ++      ++  L+ +  +
Sbjct: 245 RLIDIDVVGLAAVPTGVGLCVLFVRQGRLLDRKTFFFPGVTADEARGAAVTAMLQFYRPE 304

Query: 297 KPCPENILLSEEAEETS 313
              P  I++ +      
Sbjct: 305 SFIPPRIVVPDVLTAAE 321



 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 103/238 (43%), Gaps = 24/238 (10%)

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
           +L    K F L  +  RIE  D SH+ G      +VV  E    K+ YR +     +  +
Sbjct: 460 LLPALAKAFGLARLS-RIEAVDVSHLGGKGVRVGLVVFEEGAPRKSDYRSYGFPEAEGSS 518

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            D  A                   L     K+  + P WPD++++DGGKGQL+A +  L 
Sbjct: 519 DDYLA-------------------LAAFAAKRAEAGPPWPDLLLIDGGKGQLAAVERALG 559

Query: 485 KLNVENRITIISIAKGPKRSAGME---KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFA 541
           +        + SIAKG +RS        F   +   L L    P L F+QR+RD  H ++
Sbjct: 560 QAGAGGAFALASIAKGDRRSQNEMEDVIFVPGRKNPLGLRPGSPELLFLQRVRDTVHDYS 619

Query: 542 ITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           I   R  RKK    S L  + GIGP   RLL ++FG+   +  +S E +    G+   
Sbjct: 620 IGRQRLARKKTGLRSDLLALPGIGPKTARLLWEAFGSTAAMRAASVEAVRERTGLGPA 677


>gi|294790861|ref|ZP_06756019.1| excinuclease ABC subunit C [Scardovia inopinata F0304]
 gi|294458758|gb|EFG27111.1| excinuclease ABC subunit C [Scardovia inopinata F0304]
          Length = 775

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 162/303 (53%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y    N    R   M+    ++ +
Sbjct: 42  KTSDIPAQPGVYKWRDANGRVIYVGKAKNLRNRLSNYFQPLNRLHPRTQSMVLIARSLEW 101

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T+  TE+E+L LE   IK   PRFN++ RDDK++PY+ I+   ++P ++  R+ +     
Sbjct: 102 TLVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISIGDEVPRIWVTRNRNKRGTR 161

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +   ++SL   + +R+C  SVF       RPCLL  I +CS PC G IS 
Sbjct: 162 YFGPYAKVWNMRHALDSLLNAYPVRTCTQSVFHKAQVTGRPCLLAYIGKCSAPCVGRISL 221

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           E +     +    L+G    +  +K+  +M QA+   D+E A   RD+++ALS +   N 
Sbjct: 222 EDHRAMCEQVVGILTGRLGPSYAKKLTADMKQASADLDFERAARLRDQISALSSVLEQNS 281

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F L  ++  A +   F   G  RG  ++ ++   +  ++Q+++  + Q 
Sbjct: 282 VVFDTDVDADIFGLASDELEASVHCFFVRAGTIRGERSWSVERVEDIDDSQLMADLISQV 341

Query: 294 YTD 296
           Y+D
Sbjct: 342 YSD 344



 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 116/529 (21%), Positives = 206/529 (38%), Gaps = 50/529 (9%)

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
            GP     A + T +  Q +  L     +  R +    L   +++ S     ++ ++ + 
Sbjct: 239 LGP---SYAKKLTADMKQASADLDFERAARLRDQISA-LSSVLEQNSVVFDTDVDADIFG 294

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
               E +  +                     ED + + +  D ++ +       +     
Sbjct: 295 LASDELEASVHCFFVRAGTIRGERSWSVERVEDIDDSQLMADLISQVYSDLMEENKREEG 354

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
           +          LA  Q       ++R   T   ++  E T    L   +         P 
Sbjct: 355 VSIAVSTSRDALAPSQQVTADDARSRAQATRRRRSRQEETGRDDLLSPIS------AVPR 408

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS 361
            ++L  + +    LE       G  V IT   +GEK+ ++++AL NA +S  +  ++ ++
Sbjct: 409 EVILPVKPDRPEELEEWLTSLRGSAVSITTASRGEKKTLMDRALTNAQQSLARLKASRMT 468

Query: 362 HQ----MILKDFTKKFALPHIPKRIEIYDNSHIMGC-SAVGCMVVVGENGFVKNQYRKFN 416
                   L D  +   L   P RIE YD S+  G    V  MVV  +    K+QYR F 
Sbjct: 469 DIGMRTQALNDIAQALDLAEAPLRIECYDISNASGGGYQVASMVVFEDGMAKKSQYRHFA 528

Query: 417 LHPNDVKTQ-DDCAMMRMVLERRFSQ---------------------------LIKNEEN 448
           +   D +   DD + +   L RRF                               +  + 
Sbjct: 529 IRGADGQGALDDTSALYETLTRRFKHGNVAGDSGQSMEDEKRSQTLLSSQSLDHRQEAQA 588

Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508
                      F   P+++++DGG  Q++AA   L+ L + + + +  +AK  +     E
Sbjct: 589 SGSASAATRRHFAYKPNLIVVDGGLPQVNAAAQALEDLGITD-VHVCGLAKKLE-----E 642

Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLR 567
            +   +   L++  +   +Y +QR+RDE+HRFAIT HRK+R K +  S LD I GIG   
Sbjct: 643 IWLPHEEYPLIMKRQSEGMYLMQRVRDESHRFAITYHRKKRSKGSLRSALDSIEGIGLSY 702

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           ++ LL  FG+VK + +++ + L  + G+  K A  IY   H     + T
Sbjct: 703 QKRLLNHFGSVKAMRQATVQELQEVRGVGAKKAEAIYQSLHPIQDQSDT 751


>gi|289745171|ref|ZP_06504549.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           02_1987]
 gi|289685699|gb|EFD53187.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis
           02_1987]
          Length = 493

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 149/299 (49%), Gaps = 9/299 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   +++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G + + ++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVDAAQH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            + V +   FLSG        + + MN A  + D+E A   RD L+AL         +  
Sbjct: 193 RQIVADFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVVLG 252

Query: 241 ---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSE--STNAQILSYFLRQFY 294
                D  +   ++  A +Q      G+ RG   + ++   E   +  Q++  FL QFY
Sbjct: 253 DGTDADVVAFADDELEAAVQVFHVRGGRVRGQRGWIIEKPGEPGDSGIQLVEQFLTQFY 311


>gi|256026591|ref|ZP_05440425.1| excinuclease ABC subunit C [Fusobacterium sp. D11]
 gi|289764595|ref|ZP_06523973.1| excinuclease ABC subunit C [Fusobacterium sp. D11]
 gi|289716150|gb|EFD80162.1| excinuclease ABC subunit C [Fusobacterium sp. D11]
          Length = 473

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 143/498 (28%), Positives = 239/498 (47%), Gaps = 34/498 (6%)

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
             G YFGP+       +  N L + F +R C   + +   RPCL + +K C+GPC  +  
Sbjct: 4   KSGEYFGPYP--YGAWRLKNILMKLFKIRDCNRDMKKLSPRPCLKYYMKSCTGPCVYKDI 61

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            E+Y + V   K+ L G    L  ++   MNQA+   D+E +II+R+++  L  I++   
Sbjct: 62  KEEYNKNVENLKQVLRGNTSKLINELTTLMNQASQDMDFEKSIIYREQIKELKSIESSQI 121

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
             Y R    D F      + A I       G+  G  +  +   ++ T+  I       +
Sbjct: 122 IQYERELDEDIFVFKTILDKAFICVLNMRDGKILGKSSTAIDLKNKITDN-IYEAIFMSY 180

Query: 294 YTDKPCPENILLSEEAEET--SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
           Y+    P++++L  E E     +++    ++   K       +  ++++++ A  N  R 
Sbjct: 181 YSKHILPKSLVLDAEYENELSVVVKALTNEESKKKEFHFPKIKSRRKELLDMAYKNLERD 240

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                S + + +  +KD      L   P++IE +D S+I G  AV  M V  E    + +
Sbjct: 241 LESYFSKKDTIEKGIKDLHDILELKRFPRKIECFDISNIQGKDAVASMSVSIEGRAARKE 300

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF +   D    DD +MMR V+ERR+S+L   +                +PDV+++DG
Sbjct: 301 YRKFKIRCKDTP--DDFSMMREVIERRYSKLADRD----------------FPDVILIDG 342

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G GQ+++A  VL++L   +   ++S+AK  +     E +   +     L+     L   Q
Sbjct: 343 GLGQINSAGEVLERLGKIHLSELLSLAKRDE-----EIYKYGESVPYSLSKDMEALKIFQ 397

Query: 532 RLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R+RDEAHRF IT HRK R K    S LD+I+GIG +R++ LL  FG++  I ++S + L 
Sbjct: 398 RVRDEAHRFGITYHRKLRSKRIISSELDKIDGIGEVRRKKLLTKFGSISGIKKASIDELK 457

Query: 591 SIEGISKKIACKIYNHFH 608
            I  I +K+A +I N   
Sbjct: 458 EI--IPEKVALEIKNKIR 473


>gi|154487299|ref|ZP_02028706.1| hypothetical protein BIFADO_01144 [Bifidobacterium adolescentis
           L2-32]
 gi|154083817|gb|EDN82862.1| hypothetical protein BIFADO_01144 [Bifidobacterium adolescentis
           L2-32]
          Length = 780

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 161/305 (52%), Gaps = 8/305 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 54  KTSDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYQLHPRTQTMVLTARSLEW 113

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+E+L LE   IK   PRFN++ RDDK++PY+ I+   +IP ++  R        
Sbjct: 114 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERIPRVWVTRSRKRRDTR 173

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  ++++L +TF +R+C+ SVF       RPCLL  I +CS PC   I +
Sbjct: 174 YFGPYAKVWDLRHSLDALLKTFPVRTCSKSVFHKAQLTGRPCLLASIGKCSAPCVNRIGA 233

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +++     +    ++G    +   ++ R+M QA+ + ++E A   RD++  L  +   N 
Sbjct: 234 DEHRRMCEQLVGVMTGRIGKSYIAQLTRDMKQASAELEFEKAARLRDQIQMLGTVVQQNA 293

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F +  ++  A +   F   G  RG   + ++   + ++A++++  + Q 
Sbjct: 294 VVFDSDVDADVFGIASDELEASVHAFFVRSGSIRGERNWSVERVEDVSDAELIADLITQV 353

Query: 294 YTDKP 298
           Y++  
Sbjct: 354 YSETT 358



 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 156/351 (44%), Gaps = 38/351 (10%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E   ++ LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 415 APVPREVIVPIEPSRSAGLEQWLSGLRGAAVTIRVASRGDKKQLMDRANDNAKQALARSK 474

Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ +G    V  MVV  +    K++
Sbjct: 475 MSRISDMGARSDAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 534

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQL-------------------------IKN 445
           YR+F +   D +   DD + +   L RRF                               
Sbjct: 535 YRRFAIRGADGQGALDDLSALYETLTRRFRHGNIAGDSGESMDNERRMATQNDRSDGTNG 594

Query: 446 EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505
            E            F   P++V++DGGK Q+ AA   L    V++ + +  +AK  +   
Sbjct: 595 PETDAVQQNTNRRHFAYKPNLVVVDGGKPQVMAAAKALADCGVDD-VAVCGLAKRLE--- 650

Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIG 564
             E +       ++L  +   +Y +QR+RDE+HRFAIT HR+ R+K A  S LD+I GIG
Sbjct: 651 --EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALDDIPGIG 708

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
              ++ LL  FG+V+ +  +S E    ++GI    A  IY   H +    P
Sbjct: 709 EAYQKRLLNHFGSVRAMREASVEDFEQVKGIGHAKAENIYQALHSSVDIAP 759


>gi|119025857|ref|YP_909702.1| excinuclease ABC subunit C [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765441|dbj|BAF39620.1| excinuclease ABC subunit C [Bifidobacterium adolescentis ATCC
           15703]
          Length = 745

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 161/305 (52%), Gaps = 8/305 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 19  KTSDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYQLHPRTQTMVLTARSLEW 78

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+E+L LE   IK   PRFN++ RDDK++PY+ I+   +IP ++  R        
Sbjct: 79  TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERIPRVWVTRSRKRRDTR 138

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  ++++L +TF +R+C+ +VF       RPCLL  I +CS PC   I +
Sbjct: 139 YFGPYAKVWDLRHSLDALLKTFPVRTCSKNVFHKAQLTGRPCLLASIGKCSAPCVNRIGA 198

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +++     +    ++G    +   ++ R+M QA+ + ++E A   RD++  L  +   N 
Sbjct: 199 DEHRRMCEQLVGVMTGRIGKSYIAQLTRDMKQASAELEFEKAARLRDQIQMLGTVVQQNA 258

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F +  ++  A +   F   G  RG   + ++   + ++A++++  + Q 
Sbjct: 259 VVFDSDVDADVFGIASDELEASVHAFFVRSGLIRGERNWSVERVEDVSDAELIADLITQV 318

Query: 294 YTDKP 298
           Y++  
Sbjct: 319 YSETT 323



 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 156/346 (45%), Gaps = 38/346 (10%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E   ++ LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 380 APVPREVIVPIEPSRSAGLEQWLSGLRGAAVTIRVASRGDKKQLMDRANDNAKQALARSK 439

Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411
            + IS        + D TK   L   P RIE YD S+ +G    V  MVV  +    K++
Sbjct: 440 MSRISDMGARSDAMNDVTKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 499

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQL-------------------------IKN 445
           YR+F +   D +   DD + +   L RRF                               
Sbjct: 500 YRRFAIRGADGQGALDDLSALYETLTRRFRHGNIAGDSGESMDNERRMATQNDRSDGTNG 559

Query: 446 EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505
            E            F   P++V++DGGK Q+ AA   L    V++ + +  +AK  +   
Sbjct: 560 PETDAVQQNTNRRHFAYKPNLVVVDGGKPQVMAAAKALADCGVDD-VAVCGLAKRLE--- 615

Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIG 564
             E +       ++L  +   +Y +QR+RDE+HRFAIT HR+ R+K A  S LD+I GIG
Sbjct: 616 --EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALDDIPGIG 673

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
              ++ LL  FG+V+ +  +S E    ++GI    A  IY   H +
Sbjct: 674 EAYQKRLLNHFGSVRAMREASVEDFEQVKGIGHAKAENIYQALHSS 719


>gi|329946769|ref|ZP_08294181.1| excinuclease ABC, C subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526580|gb|EGF53593.1| excinuclease ABC, C subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 717

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 101/303 (33%), Positives = 152/303 (50%), Gaps = 7/303 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+ LD  GRV+YVGKA NL++R+ SY         R   M++    + +TV 
Sbjct: 13  EIPTSPGVYRFLDGQGRVVYVGKAKNLRQRLSSYFQDLTALHPRTQKMVTTACAVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVE+L LE + IK   PRFN++ +DDKS+PY+ +T     P +   R +      YFG
Sbjct: 73  STEVESLALEYSWIKEFNPRFNVMYKDDKSYPYLAVTMGETYPRVQVVRGARKPGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF  V ++ +T++ L R F +RSC+  VFR      RPCLL  I +CS PC G IS E +
Sbjct: 133 PFVQVWSIRETVDQLLRVFPVRSCSAGVFRRAQASGRPCLLGYIDKCSAPCVGRISPEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F++G       ++   M  A    D+E A   RD   AL  +   N  +  
Sbjct: 193 RALAEDFCAFMAGRTGPYLRQVEFEMKAAAAALDFEKAARLRDDAGALRKVIEGNAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L  ++  A +Q      G+ RG   + +    ++ +A+++   L Q Y   
Sbjct: 253 DATDADVFALVRDELEAAVQVFHVRGGRVRGQRGWVIDLIDDAGDAELIERLLEQVYASL 312

Query: 298 PCP 300
             P
Sbjct: 313 LDP 315



 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 100/338 (29%), Positives = 154/338 (45%), Gaps = 35/338 (10%)

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  IL+ E     + +          KV + VPK+G+K  ++     NA  +     + 
Sbjct: 382 VPREILVPEMPSNAATVRAWLEGLREGKVDLRVPKRGDKAALMGTVRKNAEEALRLHKTR 441

Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                    + L +  +   LP  P R+E YD SH  G   VG MVV  +    K+ YR+
Sbjct: 442 RAGDLTQRALALDELAEALDLPEAPLRVECYDISHTQGTYQVGSMVVFEDGAPRKSDYRR 501

Query: 415 FNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEENLN----------------------F 451
           F +   D     DD A M  VL RRF +LI  +                           
Sbjct: 502 FTVRGPDGNGATDDTAAMHEVLTRRFKRLIAEQGQGEAAIRVAEEVEDAEGVAVASGPID 561

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
               +   F   P +V++DGG  Q++AA+ VL +L+++  + +I +AK  +     E + 
Sbjct: 562 PETGRARRFSYAPGLVVVDGGLPQVNAARAVLDELSID--VPLIGLAKRLE-----EVWV 614

Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570
             +   ++L    P LY +Q LRDE+HRFAIT HRK+R      S LD I G+GP R+  
Sbjct: 615 PGEEFPVILPRTSPALYLLQHLRDESHRFAITHHRKKRSSGMTRSVLDGIPGLGPARQTA 674

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           LL+ FG+VK I ++  + +  ++GI   +A  I  H +
Sbjct: 675 LLREFGSVKRIRQADVDDITRVKGIGPALAGSILAHLN 712


>gi|320531299|ref|ZP_08032275.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136502|gb|EFW28474.1| excinuclease ABC subunit C [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 718

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 151/303 (49%), Gaps = 7/303 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+ LD  GRV+YVGKA NL++R+ SY         R   M++    + +TV 
Sbjct: 13  EIPTSPGVYRFLDGQGRVIYVGKAKNLRQRLSSYFQDLAALHPRTQKMVTTACAVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVE+L LE + IK   PRFN++ +DDKS+PY+ +T     P +   R +      YFG
Sbjct: 73  STEVESLALEYSWIKEFNPRFNVMYKDDKSYPYLAVTMGETHPRVQVVRGARKPGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    ++ +T++ L R F +RSC+  VFR      RPCLL  I +CS PC G I+ E +
Sbjct: 133 PFVQAWSIRETVDQLLRVFPVRSCSAGVFRRAQASGRPCLLGYIDKCSAPCVGRINPEDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F++G       ++   M  A    D+E A   RD   AL  +   N  +  
Sbjct: 193 RALAEDFCAFMAGRTGPYLRQVEAEMKAAAAALDFEKAARLRDDATALRKVIEGNAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L  ++  A +Q      G+ RG   + +    ++ +A+++   L Q Y   
Sbjct: 253 DATDADVFALVRDELEAAVQVFHVRGGRVRGQRGWVVDLIDDAGDAELIERLLEQVYASL 312

Query: 298 PCP 300
             P
Sbjct: 313 LDP 315



 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 100/338 (29%), Positives = 152/338 (44%), Gaps = 35/338 (10%)

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P  IL+ E     + +        G KV + VP++G+K  +++    NA  +     + 
Sbjct: 382 VPREILVPEMPSNAATVRAWLADLRGAKVDLRVPQRGDKAALMDTVRKNAEEALRLHKTR 441

Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                    + L +  +   L   P RIE YD SH  G   VG MVV  +    K  YR+
Sbjct: 442 RAGDLTQRTLALDELAEALDLAEAPLRIECYDISHTQGTYQVGSMVVFEDGAPRKADYRR 501

Query: 415 FNLHPNDVKT-QDDCAMMRMVLERRFSQLIKNEE----------------------NLNF 451
           F +   D     DD A M  VL RRF +LI  +                           
Sbjct: 502 FTVRGQDGNGATDDTAAMHEVLTRRFKRLIAEQGQGEAAARAAEEIEDAEGIAVASGPID 561

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
               +   F   P +V++DGG  Q++AA+ VL +L ++  + +I +AK  +     E + 
Sbjct: 562 PETGKARRFSYAPGLVVVDGGLLQVNAARAVLDELGID--VPLIGLAKRLE-----EVWV 614

Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570
             +   ++L    P LY +Q LRDE+HRFAIT HRK+R      S LD I G+GP R+  
Sbjct: 615 PGEEFPVILPRTSPALYLLQHLRDESHRFAITHHRKKRSAGMTRSVLDGIPGLGPARQAA 674

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           LL+ FG+V  I ++  + +  I+GI   +A  I  H +
Sbjct: 675 LLREFGSVTRIRQAEVDDITRIKGIGPALAGTILAHLN 712


>gi|322411942|gb|EFY02850.1| excinuclease ABC subunit C [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 287

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 9/285 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R++SY   ++ T +   ++S+I +  F 
Sbjct: 8   KLELLPDSPGCYLHKDKEGTIIYVGKAKNLKNRVRSYFRGSHDT-KTELLVSEIADFEFI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT +  EALLLE N+I+   P++NI L+DDKS+P+I IT+    P L   R      G Y
Sbjct: 67  VTESNTEALLLEINLIQENMPKYNIKLKDDKSYPFIKITN-ETFPRLLITRQIKKNDGLY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+       +    L R F  + C + V     + C  + + +C            + 
Sbjct: 126 FGPYPDSYTANEVKKLLDRIFPFKKCKNPVH----KVCFYYHLGQCCAHTICHTDKAYWD 181

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI--- 238
             V + K FL+G +  + + +   M  A+ +  +E A  +RD ++ ++ ++     +   
Sbjct: 182 GLVEDVKHFLNGKDDKIIDGLRAKMLAASEEMAFERAAEYRDLISGIATMRTKQRVMSKD 241

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNA 283
               D F  + +K   C+Q  F   G+            +++   
Sbjct: 242 LQDRDIFGYFVDKGWMCVQVFFVRQGKLIQRDVNLFPYYNDAEED 286


>gi|218663694|ref|ZP_03519624.1| excinuclease ABC subunit C [Rhizobium etli IE4771]
          Length = 301

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 122/205 (59%), Positives = 152/205 (74%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA +L+KR+ +Y     H++RI  M+ Q  N+ F  T
Sbjct: 61  KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 120

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  H+ PA++KHR +   +G YFG
Sbjct: 121 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 180

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           PFAS  AV +TINSLQR F +R+C DSVF  RTRPCLL+QIKRCSGPCT E+S E Y E 
Sbjct: 181 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAEL 240

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQ 208
           V EAK FLSG +  +K  +A  MN+
Sbjct: 241 VQEAKDFLSGKSQKVKSHMAEAMNR 265


>gi|25900609|emb|CAD13168.1| UvrC protein [Mycoplasma agalactiae]
          Length = 526

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 131/577 (22%), Positives = 223/577 (38%), Gaps = 59/577 (10%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +    +  T  EAL
Sbjct: 1   GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127
           LLE  M+ R  P FNILL DD+ +PY+ +        +   R ++        Y+GPF S
Sbjct: 61  LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKANAKDTKNTFYYGPFPS 120

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
               +  +                        L  +    +G       S  ++    + 
Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNKDSNFWVNQFTKI 158

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244
           K+ LS  N+N    +   M+ A     +E A+  RD L  L  ++       ++    D 
Sbjct: 159 KEILSFKNNNYLNDLTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
           F+   ++ L      F+ +G         L      +  + +  F  QFY DK  P+N +
Sbjct: 219 FAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           + EE  +  L   S +K    K+             +       H     +L    S   
Sbjct: 277 VQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            L  +     L      I I+DNS++   + VG  +V       K+ YRKFNL     ++
Sbjct: 337 SLNKYLNLPKLK----NIVIFDNSNVNNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
             D   +R  + + FS    +++                 D++I DGG  Q++ A+  LK
Sbjct: 393 -ADVDYIRQSITKFFSSDKNSKDF----------------DLIITDGGLQQVNEAKKTLK 435

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543
            L +   I +I + K                  + +   D  L+ ++ +++ E  RFA +
Sbjct: 436 FLGL--NIPVIGLVKNEHHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489

Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
             R R+K  +    L  I G+G   ++ LL  F +  
Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYA 526


>gi|227496076|ref|ZP_03926385.1| possible excinuclease ABC subunit C [Actinomyces urogenitalis DSM
           15434]
 gi|226834404|gb|EEH66787.1| possible excinuclease ABC subunit C [Actinomyces urogenitalis DSM
           15434]
          Length = 333

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 155/303 (51%), Gaps = 7/303 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+ LD  GRV+YVGKA NL+ R+ +Y         R   M++    + +TV 
Sbjct: 13  EIPTSPGVYRFLDGEGRVIYVGKAKNLRARLSNYFQDLAALHPRTQKMVTTACAVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVE+L LE + IK   PRFN++ +DDKS+PY+ +T +   P     R +      YFG
Sbjct: 73  ATEVESLALEYSWIKEFNPRFNVMYKDDKSYPYLAVTMRDTYPRAQVVRGARKPGNRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF  V ++ +T++ L R F +RSC+  VF+      RPCLL  I +CS PC G IS+  +
Sbjct: 133 PFVQVWSIRETLDQLLRVFPVRSCSAGVFQRAHASGRPCLLGYIDKCSAPCVGRISAHDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F++G       ++   M  A    D+E A   RD  AAL  +   N  +  
Sbjct: 193 RALAEDLCSFMAGRTGPYLRQVEAEMKAAAAALDFEKAARLRDDAAALRKVIERNAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L  ++  A +Q      G+ RG   + +    ++++A+++   L+Q Y D 
Sbjct: 253 DATDADVFALVRDELTAAVQVFHVRGGRVRGQRGWVIDVVEDASDAELVERLLQQVYADL 312

Query: 298 PCP 300
             P
Sbjct: 313 VEP 315


>gi|311064421|ref|YP_003971146.1| excinuclease ABC subunit C [Bifidobacterium bifidum PRL2010]
 gi|310866740|gb|ADP36109.1| UvrC Excinuclease ABC subunit C [Bifidobacterium bifidum PRL2010]
          Length = 780

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 155/303 (51%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA +L+ R+ +Y         R   M+    ++ +
Sbjct: 51  KTGDIPAQPGVYKWRDGEGRVIYVGKAKSLRNRLANYFQPLYLLHPRTQTMVLTARSLEW 110

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+EAL LE   IK   PRFN+  RDDK++PY+ I+    +P ++  R        
Sbjct: 111 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLAISSGEAVPRVWVTRSRKRRDAR 170

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  + ++++ L RTF +R+C  +VF       RPCLL  I +CS PC G I+ 
Sbjct: 171 YFGPYAKVWELRQSLDKLLRTFPVRTCTTNVFHKAELTGRPCLLASIGKCSAPCIGRIAP 230

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +++     +    ++G    +   ++ R+M  A+ + ++E A   RD +  L  +   N 
Sbjct: 231 KEHRRMCEQLVGVMTGRLGKSYIAQLTRDMKDASAELEFEKAARLRDEIQMLQTVMQQNA 290

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            ++++    D F +  ++  A +       G  RG   + ++   + ++ +++   + Q 
Sbjct: 291 VVFDQDVDADVFGMASDELEASVHAFIVRDGSIRGERNWSVERVEDVSDGELIDDLIMQV 350

Query: 294 YTD 296
           Y+D
Sbjct: 351 YSD 353



 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 96/350 (27%), Positives = 156/350 (44%), Gaps = 44/350 (12%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E    + LE       G  V I V  +GEK+ ++ +A  NA ++  +  
Sbjct: 435 APVPREVIVPVEPARRAELESWLSGLRGAVVTIRVASRGEKKALMNRANENAGQALQRSK 494

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 495 MSRISDMGTRTAAMNDVAKALGLAQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 554

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-------------- 456
           YR+F +  +D K   DD + +   L RRF       ++ +    ++              
Sbjct: 555 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDSGDSMDNERRAESSDTSASTTTA 614

Query: 457 -----------------EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499
                             + F   P++V++DGG  Q+ AA   L    V N + +  +AK
Sbjct: 615 SSPDGIRDAGVVQQNTNRHHFAYIPNLVVVDGGHPQVMAAAKALADCGV-NDVAVCGLAK 673

Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLD 558
             +     E +       ++L  +   +Y +QR+RDE+HRFAIT HR+ R+K A  S LD
Sbjct: 674 RLE-----EVWVPDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALD 728

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+G   ++ LL  FG+V+ +  +S E L +++GI    A  I+   H
Sbjct: 729 GIPGVGETYQKRLLSHFGSVRAMRDASVEELEAVKGIGHAKAEAIHTALH 778


>gi|310287507|ref|YP_003938765.1| Excinuclease ABC subunit C [Bifidobacterium bifidum S17]
 gi|309251443|gb|ADO53191.1| Excinuclease ABC subunit C [Bifidobacterium bifidum S17]
          Length = 780

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 155/303 (51%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA +L+ R+ +Y         R   M+    ++ +
Sbjct: 51  KTGDIPAQPGVYKWRDGEGRVIYVGKAKSLRNRLANYFQPLYLLHPRTQTMVLTARSLEW 110

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+EAL LE   IK   PRFN+  RDDK++PY+ I+    +P ++  R        
Sbjct: 111 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLAISSGEAVPRVWVTRSRKRRDAR 170

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  + ++++ L RTF +R+C  +VF       RPCLL  I +CS PC G I+ 
Sbjct: 171 YFGPYAKVWELRQSLDKLLRTFPVRTCTTNVFHKAELTGRPCLLASIGKCSAPCIGRIAP 230

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +++     +    ++G    +   ++ R+M  A+ + ++E A   RD +  L  +   N 
Sbjct: 231 KEHRRMCEQLVGVMTGRLGKSYIAQLTRDMKDASAELEFEKAARLRDEIQMLQTVMQQNA 290

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            ++++    D F +  ++  A +       G  RG   + ++   + ++ +++   + Q 
Sbjct: 291 VVFDQDVDADVFGMASDELEASVHAFIVRDGSIRGERNWSVERVEDVSDGELIDDLIMQV 350

Query: 294 YTD 296
           Y+D
Sbjct: 351 YSD 353



 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 96/350 (27%), Positives = 154/350 (44%), Gaps = 44/350 (12%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E    + LE       G  V I V  +GEK+ ++ +A  NA ++  +  
Sbjct: 435 APVPREVIVPVEPARRAELESWLSGLRGAVVAIRVASRGEKKALMNRANENAGQALQRSK 494

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 495 MSRISDMGTRTAAMNDVAKALGLAQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 554

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLN-------------------- 450
           YR+F +  +D K   DD + +   L RRF       ++ +                    
Sbjct: 555 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDSGDCMDNERRAESSDTSASTTTA 614

Query: 451 -----------FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499
                             + F   P++V++DGG  Q+ AA   L    V N + +  +AK
Sbjct: 615 SSPDGIRDAGVVQQNTNRHHFAYIPNLVVVDGGHPQVMAAAKALADCGV-NDVAVCGLAK 673

Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLD 558
             +     E +       ++L  +   +Y +QR+RDE+HRFAIT HR+ R+K A  S LD
Sbjct: 674 RLE-----EVWVPDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALD 728

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+G   ++ LL  FG+V+ +  +S E L +++GI    A  I+   H
Sbjct: 729 GIPGVGETYQKRLLSHFGSVRAMRDASVEELEAVKGIGHAKAEAIHTALH 778


>gi|25900601|emb|CAD13164.1| UvrC protein [Mycoplasma agalactiae]
          Length = 525

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 131/576 (22%), Positives = 223/576 (38%), Gaps = 59/576 (10%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +    +  T  EAL
Sbjct: 1   GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127
           LLE  M+ R  P FNILL DD+ +PY+ +        +   R ++        Y+GPF S
Sbjct: 61  LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKANAKDTKNTFYYGPFPS 120

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
               +  +                        L  +    +G       S  ++    + 
Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNKDSNFWVNQFTKI 158

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244
           K+ LS  N+N   ++   M+ A     +E A+  RD L  L  ++       ++    D 
Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
           F+   ++ L      F+ +G         L      +  + +  F  QFY DK  P+N +
Sbjct: 219 FAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           + EE  +  L   + +K    K+             +       H     +L    S   
Sbjct: 277 VQEEILKYDLNLSNDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLN 336

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            L  +     L      I I+DNS+I   + VG  +V       K+ YRKFNL     ++
Sbjct: 337 SLNKYLSLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
             D   +R  + + FS     ++                 D++I DGG  Q++ A+  LK
Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543
            L +   I +I + K                  + +   D  L+ ++ +++ E  RFA +
Sbjct: 436 FLGL--NIPVIGLVKNEYHKTRA--LIDLNLNEIYI--NDLELHNYLAQIQIEVDRFAKS 489

Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578
             R R+K  +    L  I G+G   ++ LL  F + 
Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSY 525


>gi|25900605|emb|CAD13166.1| UvrC protein [Mycoplasma agalactiae]
          Length = 525

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 131/576 (22%), Positives = 223/576 (38%), Gaps = 59/576 (10%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +    +  T  EAL
Sbjct: 1   GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127
           LLE  M+ R  P FNILL DD+ +PY+ +        +   R ++        Y+GPF S
Sbjct: 61  LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKANAKDTKNTFYYGPFPS 120

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
               +  +                        L  +    +G       S  ++    + 
Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNKDSNFWVNQFTKI 158

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244
           K+ LS  N+N   ++   M+ A     +E A+  RD L  L  ++       ++    D 
Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
           F+   ++ L      F+ +G         L      +  + +  F  QFY DK  P+N +
Sbjct: 219 FAYKTDEKLIYATVLFYRYGDLINKVN--LTIPLGISIGESIRVFFEQFYADKILPDNFI 276

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           + EE  +  L   + +K    K+             +       H     +L    S   
Sbjct: 277 VQEEILKYDLNLSNDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLN 336

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            L  +     L      I I+DNS+I   + VG  +V       K+ YRKFNL     ++
Sbjct: 337 SLNKYLSLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
             D   +R  + + FS     ++                 D++I DGG  Q++ A+  LK
Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543
            L +   I +I + K                  + +   D  L+ ++ +++ E  RFA +
Sbjct: 436 FLGL--NIPVIGLVKNEYHKTRA--LIDLNLNEIYI--NDLELHNYLAQIQIEVDRFAKS 489

Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTV 578
             R R+K  +    L  I G+G   ++ LL  F + 
Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSY 525


>gi|229817559|ref|ZP_04447841.1| hypothetical protein BIFANG_02822 [Bifidobacterium angulatum DSM
           20098]
 gi|229785348|gb|EEP21462.1| hypothetical protein BIFANG_02822 [Bifidobacterium angulatum DSM
           20098]
          Length = 768

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 8/304 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 55  KTSDIPAEPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYQLHPRTQTMVLTARSLEW 114

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  +E+E+L LE   IK   PRFN+  +DDK++PY+ ++     P ++  R  +     
Sbjct: 115 TVVGSELESLTLEYTWIKEFDPRFNVQFKDDKTYPYLAVSIGQDYPRVWVTRSRNRRDSR 174

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  ++++L RTF +R+C ++ F       RPCLL  I +CS PC G I  
Sbjct: 175 YFGPYAKVWPMRHSLDALLRTFPVRTCNNNAFHKAELTNRPCLLASIGKCSAPCVGRIGK 234

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            ++   V +    ++G    +   ++ R+M  A+   ++E A   RD +  LS +   N 
Sbjct: 235 AEHRRMVEQLVGVMTGRIGKSYIAQLTRDMKSASADLEFEKAARLRDEIQLLSTVVQSNA 294

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            + +     D F    ++  A     F   G  RG   + ++   +  +A +++  + + 
Sbjct: 295 VVMDDQVDADVFGFATDELEASAHVFFVRAGSIRGERNWSVERVEDIDDADLMADLMVRV 354

Query: 294 YTDK 297
           Y + 
Sbjct: 355 YAES 358



 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 155/351 (44%), Gaps = 41/351 (11%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E      +E       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 420 APVPREVIVPIEPNRREEIEQWLTDLRGGTVSIRVAVRGDKKQLMDRANENASQALQRAK 479

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + +S        + +  +   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 480 MSRVSDMGARTRAMNEVAEALGLEEAPLRIECYDISNTVGGAFQVASMVVFEDAVAKKSE 539

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIK-------------------------- 444
           YR+F +  +D K   DD + +   L RRF                               
Sbjct: 540 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDSGESMEAERAVAGATGGTKAGQD 599

Query: 445 --NEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK 502
             ++E            F   P++V++DGGK Q  AA   LK   V + + +  +AK  +
Sbjct: 600 GLDDEAEVVRQNPDRRHFAYKPNLVVVDGGKPQAMAAAKALKDCGVTD-VAVCGLAKRLE 658

Query: 503 RSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEIN 561
                E +       ++L  +   +Y +QR+RDE+HRFAIT HR+ RRK +  S LD I 
Sbjct: 659 -----EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQMRRKGSLRSALDGIP 713

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           GIG   ++ LL  FG+VK +  +S E   ++ GI    A  +Y+  H   S
Sbjct: 714 GIGEQYQKRLLAQFGSVKAMRSASVEDFEAVRGIGHAKAQALYDALHAGES 764


>gi|25900613|emb|CAD13170.1| UvrC protein [Mycoplasma agalactiae]
          Length = 527

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 135/578 (23%), Positives = 223/578 (38%), Gaps = 59/578 (10%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +    +  T  EAL
Sbjct: 1   GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127
           LLE  M+ R  P FNILL DD+ +PY+ +        +   R  +T       Y+GPF S
Sbjct: 61  LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTLYYGPFPS 120

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
               +  +  LQ      S                      G       S  ++    + 
Sbjct: 121 GYGAKPILKLLQHEALYES----------------------GLLIKNNDSSFWVNQFAKI 158

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244
           K+ LS  N+N   ++   M+ A     +E A+  RD L  L  ++       ++    D 
Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
           F+   ++ L      F+ +G         L      +  + +  F  QFY DK  P+N +
Sbjct: 219 FAYKTDEKLIYATVLFYRYGVLISKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           + EE  +  L   S +K    K+             +       H     +L    S   
Sbjct: 277 VQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            L  +     L      I I+DNS+I   + VG  +V       K+ YRKFNL     ++
Sbjct: 337 SLNKYLNLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKSKSLYRKFNLEALSYRS 392

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
             D   +R  + + FS     ++                 D++I DGG  Q++ A+  LK
Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543
            L +   I +I + K                  + +   D  L+ ++ +++ E  RFA +
Sbjct: 436 VLGI--NIPVIGLVKNEYHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489

Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
             R R+K  +    L  I G+G   ++ LL  F +   
Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYAK 527


>gi|260910772|ref|ZP_05917425.1| excision endonuclease subunit UvrC [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260635116|gb|EEX53153.1| excision endonuclease subunit UvrC [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 456

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 121/486 (24%), Positives = 218/486 (44%), Gaps = 42/486 (8%)

Query: 143 FLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKI 202
                 + +   + + CL + I  C  PC G+ + E Y E + +A++ L G    +++ +
Sbjct: 1   RFPITREGMEMGKYKTCLEYHIHNCDAPCVGKQTWENYQENIRQAREILKGNTREVRKML 60

Query: 203 ARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL-----ACIQ 257
              M +   +  +E A   + R   L +    ++ +   +    ++   +      A I 
Sbjct: 61  YEEMLKKAEELKFEEAEALKKRYILLDNYCAKSEVVSFSIADVDVFSITDDEFNRTAFIN 120

Query: 258 TCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEI 317
                 G    + TF  K   + TN  IL+  + +           ++     E ++ E 
Sbjct: 121 YLHVKNGTVNQSFTFEYKRKLDETNQDILASAIPEIRERFDSKAKEIIVPFEMEWTMREA 180

Query: 318 SFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST------EISHQMILKDFTK 371
            F           VP++G+KR+++E + +N  +    +L        E     ++K+   
Sbjct: 181 VFI----------VPQRGDKRRLLELSEMNGKQYKFDRLKQSEKLNPEQKAVRLMKELQT 230

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
           K  +P +P +IE +DNS+I G  AV   VV       K  YRK+N+    V+  DD A M
Sbjct: 231 KLQMPRMPYQIECFDNSNISGTDAVAGCVVFKAMKPSKKDYRKYNIKT--VEGPDDYASM 288

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           + V+ RR++++I+    L              PD++I DGGKGQ+S  + V+    +   
Sbjct: 289 KEVVRRRYTRIIEEGTAL--------------PDLIITDGGKGQMSVVRDVVVG-ELHLD 333

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
           I I  +AK  +     E  +    + + L+++  + + + R++DE HR+AI+ HR +R K
Sbjct: 334 IPIAGLAKDDRHRT-NELLYGWPPQVVGLDVKSELFHVLTRIQDEVHRYAISFHRDKRSK 392

Query: 552 -AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            A +S LD+I GIG   K  LL+   +VK I  +S + LA+   I    A  ++NH+H+ 
Sbjct: 393 QALHSELDDIKGIGLKTKATLLKELKSVKQIKEASFDVLAA--HIGNAKAQIVFNHWHEQ 450

Query: 611 TSHTPT 616
                T
Sbjct: 451 KPSAAT 456


>gi|325068725|ref|ZP_08127398.1| excinuclease ABC, C subunit [Actinomyces oris K20]
          Length = 718

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 151/303 (49%), Gaps = 7/303 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+ LD  GRV+YVGKA NL++R+ +Y         R   M++    + +TV 
Sbjct: 13  EIPTSPGVYRFLDGQGRVIYVGKAKNLRQRLSNYFQDLAALHPRTQKMVTTACAVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVE+L LE + IK   PRFN++ +DDKS+PY+ +T     P +   R +      YFG
Sbjct: 73  STEVESLALEYSWIKEFNPRFNVMYKDDKSYPYLAVTMGETYPRVQVVRGARKPGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    ++ +T+  L R F +RSC+  VFR      RPCLL  I +CS PC G IS + +
Sbjct: 133 PFVQAWSIRETVEQLLRVFPVRSCSAGVFRRAQASGRPCLLGYIDKCSAPCVGRISPQDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F++G       ++   M  A    D+E A   RD  AAL  +   N  +  
Sbjct: 193 RALAEDFCAFMAGRTGPYLRQVEAEMKAAAAALDFEKAARLRDDAAALRKVIEGNAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L  ++  A +Q      G+ RG   + +    ++ +A+++   L Q Y   
Sbjct: 253 DATDADVFALVRDELEAAVQVFHVRGGRVRGQRGWVVDLIDDAGDAELIERLLEQVYASL 312

Query: 298 PCP 300
             P
Sbjct: 313 VDP 315



 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 99/338 (29%), Positives = 155/338 (45%), Gaps = 35/338 (10%)

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ IL+ E     + +        G KV + VP++G+K  +++    NAH +     + 
Sbjct: 382 VPKEILVPELPSNAATVRTWLAGLRGAKVDLRVPQRGDKAALMDTVRKNAHEALRLHKTR 441

Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                    + L +  +   LP  P R+E YD SH  G   VG MVV  +    K+ YR+
Sbjct: 442 RAGDLTQRALALDELAEALDLPEAPLRVECYDISHTQGTYQVGSMVVFEDGAPRKSDYRR 501

Query: 415 FNLHPNDVKTQDDC-AMMRMVLERRFSQLIKNEENLN----------------------F 451
           F +   D     D  A M  VL RRF +LI  +                           
Sbjct: 502 FTVRGQDGSGAADDTAAMHEVLTRRFKRLIAEQGRGEAAARAAQEIEDVEGIAVVSGPID 561

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
               +   F   P +V++DGG  Q++AA+ VL +L ++  + +I +AK  +     E + 
Sbjct: 562 PETGKTRRFSYAPGLVVVDGGLPQVNAARTVLDELGID--VPLIGLAKRLE-----EVWV 614

Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570
             +   ++L    P LY +Q LRDE+HRFAIT HRK+R      S LD I G+GP R+  
Sbjct: 615 PGEEFPVILPRTSPALYLLQHLRDESHRFAITHHRKKRSAGMTRSVLDGIPGLGPARQAA 674

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           LL+ FG+V  I ++  + +  ++GI   +A  I  H +
Sbjct: 675 LLREFGSVTRIRQADVDDITRVKGIGPALAGTILAHLN 712


>gi|227496077|ref|ZP_03926386.1| possible excinuclease ABC subunit C [Actinomyces urogenitalis DSM
           15434]
 gi|226834375|gb|EEH66758.1| possible excinuclease ABC subunit C [Actinomyces urogenitalis DSM
           15434]
          Length = 332

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 156/334 (46%), Gaps = 35/334 (10%)

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI- 360
            IL+     +   +        G KV++ VP++G+K  +++    NA  +     +    
Sbjct: 1   EILVPVLPPDAEAVAAWLTGLRGAKVELRVPQRGDKAALMDTVRKNAEEALRLHKTRRAG 60

Query: 361 ---SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
                   L++  + F LP  P R+E YD SH  G   VG MVV  +    K+ YR+F +
Sbjct: 61  DLTQRSQALEELAQAFDLPEAPLRVECYDISHTQGTYQVGSMVVFEDGAPRKSDYRRFLI 120

Query: 418 HPNDVKT-QDDCAMMRMVLERRFSQLIKNEE----------------------NLNFHPK 454
              D     DD A M  VL RRF +L+  +                              
Sbjct: 121 RGQDGHGATDDTAAMHEVLTRRFKRLLAEQGQELSQEDAELVGEEGDGVALASGPIDPET 180

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
            +   F   P +V++DGG  Q++AA+ VL +L V+  + ++ +AK  +     E +   +
Sbjct: 181 GRARRFSYAPSLVVVDGGLPQVNAARAVLDELGVD--VPLVGLAKRLE-----EVWVPGE 233

Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQ 573
              ++L    P LY +Q LRDE+HRFAIT HR +R K    S LD+I G+GP R+  LL+
Sbjct: 234 EFPVILPRTSPALYLLQYLRDESHRFAITHHRSKRSKGMTRSVLDDIAGLGPARQAALLK 293

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            FG+VK +  +S E ++ ++GI   +A  +  H 
Sbjct: 294 EFGSVKRLREASVEQISQVKGIGPALAAAVAEHL 327


>gi|25900615|emb|CAD13171.1| UvrC protein [Mycoplasma agalactiae]
          Length = 526

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 131/577 (22%), Positives = 222/577 (38%), Gaps = 59/577 (10%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +    +  T  EAL
Sbjct: 1   GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127
           LLE  M+ R  P FNILL DD+ +PY+ +        +   R ++        Y+GPF S
Sbjct: 61  LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKANAKDTKNTFYYGPFPS 120

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
               +  +                        L  +    +G       S  ++    + 
Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNKDSSFWVNQFTKI 158

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244
           K+ LS  N+N   ++   M+ A     +E A+  RD L  L  ++       ++    D 
Sbjct: 159 KEILSFKNNNYLNELTNKMHNAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
           F+   ++ L      F+ +G         L      +  + +  F  QFY DK  P+N +
Sbjct: 219 FAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFYADKIFPDNFI 276

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           + EE  +  L   + +K    K+             +       H      L    S   
Sbjct: 277 VQEEVLKYDLNLSNDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNHLEKADSMLS 336

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            L  +     L      I I+DNS+I   + VG  +V       K+ YRKFNL     ++
Sbjct: 337 SLNKYLSLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
             D   +R  + + FS     ++                 D++I DGG  Q++ A+  LK
Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543
            L +   I +I + K                  + +   D  L+ ++ +++ E  RFA +
Sbjct: 436 VLGI--NIPVIGLVKNEHHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489

Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
             R R+K  +    L  I G+G   ++ LL  F +  
Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYA 526


>gi|313140289|ref|ZP_07802482.1| nuclease subunit of the excinuclease complex [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132799|gb|EFR50416.1| nuclease subunit of the excinuclease complex [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 794

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA +L+ R+ +Y         R   M+    ++ +
Sbjct: 65  KTGDIPAQPGVYKWRDGEGRVIYVGKAKSLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 124

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+EAL LE   IK   PRFN+  RDDK++PY+ I+    +P ++  R        
Sbjct: 125 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLAISSGEAVPRVWVTRSRKRRDAR 184

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  + ++++ L RTF +R+C  SVF       RPCLL  I +CS PC G I+ 
Sbjct: 185 YFGPYAKVWELRQSLDKLLRTFPVRTCTTSVFHKAELTGRPCLLASIGKCSAPCIGRIAL 244

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +++     +    ++G    +   ++ R+M  A+ + ++E A   RD +  L  +   N 
Sbjct: 245 KEHRRMCEQLVGVMTGRLGKSYIAQLTRDMKDASAELEFEKAARLRDEIQMLQTVMQQNA 304

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            ++++    D F +  ++  A +       G  RG   + ++   + ++ +++   + Q 
Sbjct: 305 VVFDQDVDADVFGMASDELEASVHAFIVRDGSIRGERNWSVERVEDVSDGELIDDLIMQV 364

Query: 294 YTD 296
           Y+D
Sbjct: 365 YSD 367



 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 44/352 (12%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E    + LE       G  V I V  +GEK+ ++++A  NA ++  +  
Sbjct: 449 APVPREVIVPVEPARRAELESWLSGLRGAVVTIRVASRGEKKALMDRANENAGQALQRSK 508

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 509 MSRISDMGTRTAAMNDVAKALGLAQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 568

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-------------- 456
           YR+F +  +D K   DD + +   L RRF       ++ +    ++              
Sbjct: 569 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDSGDSMDNERRAESSDTSASTTTA 628

Query: 457 -----------------EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499
                             + F   P++V++DGG  Q+ AA   L    V N + +  +AK
Sbjct: 629 SSPDGIRDAGVVQQNTNRHHFAYIPNLVVVDGGHPQVMAAAKALADCGV-NDVAVCGLAK 687

Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLD 558
             +     E +       ++L  +   +Y +QR+RDE+HRFAIT HR+ R+K A  S LD
Sbjct: 688 RLE-----EVWVPDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALD 742

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I G+G   ++ LL  FG+V+ +  +S E L +++GI    A  I+   H  
Sbjct: 743 GIPGVGETYQKRLLSHFGSVRAMRDASVEELEAVKGIGHAKAEAIHTALHAE 794


>gi|224283140|ref|ZP_03646462.1| excinuclease ABC subunit C [Bifidobacterium bifidum NCIMB 41171]
          Length = 780

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA +L+ R+ +Y         R   M+    ++ +
Sbjct: 51  KTGDIPAQPGVYKWRDGEGRVIYVGKAKSLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 110

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+EAL LE   IK   PRFN+  RDDK++PY+ I+    +P ++  R        
Sbjct: 111 TVVGTELEALTLEYTWIKEFDPRFNVQFRDDKTYPYLAISSGEAVPRVWVTRSRKRRDAR 170

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  + ++++ L RTF +R+C  SVF       RPCLL  I +CS PC G I+ 
Sbjct: 171 YFGPYAKVWELRQSLDKLLRTFPVRTCTTSVFHKAELTGRPCLLASIGKCSAPCIGRIAL 230

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +++     +    ++G    +   ++ R+M  A+ + ++E A   RD +  L  +   N 
Sbjct: 231 KEHRRMCEQLVGVMTGRLGKSYIAQLTRDMKDASAELEFEKAARLRDEIQMLQTVMQQNA 290

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            ++++    D F +  ++  A +       G  RG   + ++   + ++ +++   + Q 
Sbjct: 291 VVFDQDVDADVFGMASDELEASVHAFIVRDGSIRGERNWSVERVEDVSDGELIDDLIMQV 350

Query: 294 YTD 296
           Y+D
Sbjct: 351 YSD 353



 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 44/352 (12%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E    + LE       G  V I V  +GEK+ ++++A  NA ++  +  
Sbjct: 435 APVPREVIVPVEPARRAELESWLSGLRGAVVTIRVASRGEKKALMDRANENAGQALQRSK 494

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 495 MSRISDMGTRTAAMNDVAKALGLAQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 554

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIKNEENLNFHPKKQ-------------- 456
           YR+F +  +D K   DD + +   L RRF       ++ +    ++              
Sbjct: 555 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDSGDSMDNERRAESSDTSASTTTA 614

Query: 457 -----------------EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499
                             + F   P++V++DGG  Q+ AA   L    V N + +  +AK
Sbjct: 615 SSPDGIRDAGVVQQNTNRHHFAYIPNLVVVDGGHPQVMAAAKALADCGV-NDVAVCGLAK 673

Query: 500 GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLD 558
             +     E +       ++L  +   +Y +QR+RDE+HRFAIT HR+ R+K A  S LD
Sbjct: 674 RLE-----EVWVPDDEYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALD 728

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I G+G   ++ LL  FG+V+ +  +S E L +++GI    A  I+   H  
Sbjct: 729 GIPGVGETYQKRLLSHFGSVRAMRDASVEELEAVKGIGHAKAEAIHTALHAE 780


>gi|25900599|emb|CAD13163.1| UvrC protein [Mycoplasma agalactiae]
 gi|25900607|emb|CAD13167.1| UvrC protein [Mycoplasma agalactiae]
          Length = 526

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 135/577 (23%), Positives = 223/577 (38%), Gaps = 59/577 (10%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +    +  T  EAL
Sbjct: 1   GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127
           LLE  M+ R  P FNILL DD+ +PY+ +        +   R  +T       Y+GPF S
Sbjct: 61  LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTLYYGPFPS 120

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
               +  +  LQ      S                      G       S  ++    + 
Sbjct: 121 GYGAKPILKLLQHEALYES----------------------GLLIKNNDSSFWVNQFAKI 158

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244
           K+ LS  N+N   ++   M+ A     +E A+  RD L  L  ++       ++    D 
Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
           F+   ++ L      F+ +G         L      +  + +  F  QFY DK  P+N +
Sbjct: 219 FAYKTDEKLIYATVLFYRYGVLISKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           + EE  +  L   S +K    K+             +       H     +L    S   
Sbjct: 277 VQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            L  +     L      I I+DNS+I   + VG  +V       K+ YRKFNL     ++
Sbjct: 337 SLNKYLNLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKSKSLYRKFNLEALSYRS 392

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
             D   +R  + + FS     ++                 D++I DGG  Q++ A+  LK
Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543
            L +   I +I + K                  + +   D  L+ ++ +++ E  RFA +
Sbjct: 436 VLGI--NIPVIGLVKNEYHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489

Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
             R R+K  +    L  I G+G   ++ LL  F +  
Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYA 526


>gi|326773403|ref|ZP_08232686.1| excinuclease ABC subunit C [Actinomyces viscosus C505]
 gi|326636633|gb|EGE37536.1| excinuclease ABC subunit C [Actinomyces viscosus C505]
          Length = 718

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 152/303 (50%), Gaps = 7/303 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY+ LD  GRV+YVGKA NL++R+ +Y         R   M++    + +TV 
Sbjct: 13  EIPTSPGVYRFLDGQGRVIYVGKAKNLRQRLSNYFQDLAALHPRTQKMVTTACAVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVE+L LE + IK   PRFN++ +DDKS+PY+ +T     P +   R +      YFG
Sbjct: 73  STEVESLALEYSWIKEFNPRFNVMYKDDKSYPYLAVTMGETYPRVQVVRGARKPGTRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKY 180
           PF    ++ +T+  L R F +RSC+  VFR      RPCLL  I +CS PC G IS++ +
Sbjct: 133 PFVQAWSIRETVEQLLRVFPVRSCSAGVFRRAQASGRPCLLGYIDKCSAPCVGRISAQDH 192

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY- 239
                +   F++G       ++   M  A    D+E A   RD  AAL  +   N  +  
Sbjct: 193 RALAEDFCAFMAGRTGPYLRQVEAEMKAAAAALDFEKAARLRDDAAALRKVIEGNAVVLP 252

Query: 240 --NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D F+L  ++  A +Q      G+ RG   + +    ++ +A+++   L Q Y   
Sbjct: 253 DATDADVFALVRDELEAAVQVFHVRGGRVRGQRGWVVDLIDDAGDAELIERLLEQVYASL 312

Query: 298 PCP 300
             P
Sbjct: 313 VDP 315



 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 97/344 (28%), Positives = 154/344 (44%), Gaps = 35/344 (10%)

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P+ IL+ E     + +        G KV + VP++G+K  +++    NA  +     + 
Sbjct: 382 VPKEILVPELPSNAATVRTWLAGLRGAKVDLRVPQRGDKAALMDTVRKNAQEALRLHKTR 441

Query: 359 EI----SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                    + L +  +   LP  P R+E YD SH  G   VG MVV  +    K+ YR+
Sbjct: 442 RAGDLTQRALALDELAEALDLPEAPLRVECYDISHTQGTYQVGSMVVFEDGAPRKSDYRR 501

Query: 415 FNLHPNDVKTQDDC-AMMRMVLERRFSQLIKNEENLN----------------------F 451
           F +   D     D  A M  VL RRF +LI  +                           
Sbjct: 502 FTVRGQDGSGAADDTAAMHEVLTRRFKRLIAEQGRGEAAARAAQEIEDVEGIAVASGPID 561

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
               +   F   P +V++DGG  Q++AA+ VL +L ++  + +I +AK  +     E + 
Sbjct: 562 PETGKARRFSYAPGLVVVDGGLPQVNAARTVLDELGID--VPLIGLAKRLE-----EVWV 614

Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570
             +   ++L    P LY +Q LRDE+HRFAIT HRK+R      S LD   G+GP R+  
Sbjct: 615 PGEEFPVILPRTSPALYLLQHLRDESHRFAITHHRKKRSAGMTRSVLDGTPGLGPARQAA 674

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           LL+ FG+V  I ++  + +  ++GI   +A  I  H +   +  
Sbjct: 675 LLREFGSVARIRQADVDDITRVKGIGPALAGSILAHLNSPATEQ 718


>gi|88861288|ref|ZP_01135919.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2]
 gi|88816667|gb|EAR26491.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2]
          Length = 396

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 26/414 (6%)

Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--RMDCFSLYHNKNLACIQTCFFHF 263
           M +A+L  ++E A   RD++  L  +Q       N   MD         L  +       
Sbjct: 1   MEKASLALNFELAAKIRDQILLLRKMQEQQSVSGNFAEMDVIGYQTKNGLTAVHLLMIRD 60

Query: 264 GQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSEEAEETSLLEISF 319
            +  G+ TFF K   +S + +ILS F+ Q+Y          + I+L     +T +L  + 
Sbjct: 61  HKILGSNTFFPKIPKDSIDDEILSSFIAQYYLSVGRSSRIAKEIILPFAIADTEVLNAAI 120

Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP 379
            +    KV +   ++GE+ + +E A  NA  S   K S + S            AL    
Sbjct: 121 SQVADKKVHLKAVQRGERAEYLELANKNALNSILTKQSAQDSINKRYAALKSALALD-EI 179

Query: 380 KRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRF 439
            R+E +D SH MG + V   VV    G  K +YR++N+    +   DD A M   L++R+
Sbjct: 180 NRMECFDISHTMGENTVASCVVFDGQGPNKKEYRRYNVKG--ITGGDDYAAMAFALKKRY 237

Query: 440 SQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAK 499
            ++                     PDVV +DGGKGQLS A+       +E +  ++ +AK
Sbjct: 238 GKMTD---------------VTKVPDVVFIDGGKGQLSQAEHFFSTWTLEKQPLLVGVAK 282

Query: 500 GPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPL 557
           G  R AG+E   +  G   + L+     L+ IQ +RDE+HRFAI  HR +R+K    S L
Sbjct: 283 GVSRKAGLETLLIDAGRKTINLSADSIALHLIQHIRDESHRFAIAGHRNKRQKQRNQSVL 342

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           +EI  +G  R++ +L+  G ++ +  +S   L  + GIS+++A KI+NH H  +
Sbjct: 343 EEIPNVGQKRRQAILKFLGGMQGVLGASISQLEKVPGISQELAEKIFNHLHDKS 396


>gi|25900593|emb|CAD13160.1| UvrC protein [Mycoplasma agalactiae PG2]
          Length = 526

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 135/577 (23%), Positives = 223/577 (38%), Gaps = 59/577 (10%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +    +  T  EAL
Sbjct: 1   GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127
           LLE  M+ R  P FNILL DD+ +PY+ +        +   R  +T       Y+GPF S
Sbjct: 61  LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTLYYGPFPS 120

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
               +  +  LQ      S                      G       S  ++    + 
Sbjct: 121 GYGAKPILKLLQHEALYES----------------------GLLIKNNDSSFWVNQFAKI 158

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244
           K+ LS  N+N   ++   M+ A     +E A+  RD L  L  ++       ++    D 
Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
           F+   ++ L      F+ +G         L      +  + +  F  QFY DK  P+N +
Sbjct: 219 FAYKTDEKLIYATVLFYRYGVLINKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           + EE  +  L   S +K    K+             +       H     +L    S   
Sbjct: 277 VQEEILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            L  +     L      I I+DNS+I   + VG  +V       K+ YRKFNL     ++
Sbjct: 337 SLNKYLNLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
             D   +R  + + FS     ++                 D++I DGG  Q++ A+  LK
Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543
            L +   I +I + K                  + +   D  L+ ++ +++ E  RFA +
Sbjct: 436 VLGI--NIPVIGLVKNEYHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489

Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
             R R+K  +    L  I G+G   ++ LL  F +  
Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYA 526


>gi|291456764|ref|ZP_06596154.1| excinuclease ABC subunit C [Bifidobacterium breve DSM 20213]
 gi|291382041|gb|EFE89559.1| excinuclease ABC subunit C [Bifidobacterium breve DSM 20213]
          Length = 805

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 156/304 (51%), Gaps = 8/304 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 56  KTSDIPAKPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEW 115

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+E+L LE   IK   PRFN+  RDDK++PY+ ++   ++P ++  R        
Sbjct: 116 TVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGEQVPRVWVTRSRKRRDTR 175

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  +++ L RTF +R+C  +VF       RPCLL  I +CS PC  +I +
Sbjct: 176 YFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLLASIGKCSAPCVNQIEA 235

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +++     +    ++G        ++ R+M +A+ + ++E A   RD++  L  +   N 
Sbjct: 236 DEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNA 295

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            ++++    D F    ++  A +   +   G  RG   + ++   +  +  +++  L Q 
Sbjct: 296 VVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIADTDLMADLLVQV 355

Query: 294 YTDK 297
           Y+D+
Sbjct: 356 YSDE 359



 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 162/366 (44%), Gaps = 58/366 (15%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  I++  E    + LE     Q G  V I V  +G+K++++++A  NA+++  +  
Sbjct: 446 APVPREIIVPIEPSRRAELESWLTDQRGGAVTIRVASRGDKKQLMDRANENANQALQRSK 505

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 506 MSRISDMGARTQAMNDVAKALGLNQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 565

Query: 412 YRKFNLHPNDVKT-QDDCAMMRMVLERRFS----------------QLIKNEENLNF--- 451
           YR+F++   D +   DD + +   L RRF                 +  K E+       
Sbjct: 566 YRRFSIRGKDGQGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRAAKAEQQQEQSVS 625

Query: 452 --------------------------HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
                                           + F   P++V++DGGK Q+ AA   LK 
Sbjct: 626 DANGTSSTTPAAITDASSFADSSEVVQQNTNRHHFAYKPNLVVVDGGKPQVMAAAKALKD 685

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
             V++ + +  +AK  +     E +       ++L  +   +Y +QR+RDE+HRFAIT H
Sbjct: 686 CGVDD-VAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYH 739

Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R++R+K A  S LDEI GIG   ++ LL  FG+VK +  +S E    ++G+    A  +Y
Sbjct: 740 RQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMRMASVEDFEQVKGVGHAKAEALY 799

Query: 605 NHFHKN 610
              H  
Sbjct: 800 AALHDE 805


>gi|25900595|emb|CAD13161.1| UvrC protein [Mycoplasma agalactiae]
          Length = 526

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 133/577 (23%), Positives = 223/577 (38%), Gaps = 59/577 (10%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +    +  T  EAL
Sbjct: 1   GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127
           LLE  M+ R  P FNILL DD+ +PY+ +        +   R  +T       Y+GPF S
Sbjct: 61  LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTFYYGPFPS 120

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
               +  +                        L  +    +G       S  ++    + 
Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNQDSSFWVNQFAKI 158

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244
           K+ LS  N+N   ++   M+ A     +E A+  RD L  L  ++       ++    D 
Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELAMFLRDGLTYLKKLKESQIIELSQYKNIDV 218

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
           F+   ++ L      F+ +G         L      +  + +  F  QFY DK  P+N +
Sbjct: 219 FAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           + EE  +  L   S +K    K+             +       H     +L    S   
Sbjct: 277 VQEEILKYDLNLSSNYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            L  +     L      I I+DNS+I   + VG  +V       K+ YRKFNL     ++
Sbjct: 337 SLNKYLNLSKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
             D   +R  + + FS     ++                 D++I DGG  Q++ A+  LK
Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543
            L +   I +I + K                  + +   D  L+ ++ +++ E  RFA +
Sbjct: 436 FLGL--NIPVIGLVKNEHHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489

Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
             R R+K  +    L  I G+G   ++ LL  F +  
Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNYFKSYA 526


>gi|25900597|emb|CAD13162.1| UvrC protein [Mycoplasma agalactiae]
 gi|25900603|emb|CAD13165.1| UvrC protein [Mycoplasma agalactiae]
          Length = 526

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 133/577 (23%), Positives = 223/577 (38%), Gaps = 59/577 (10%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +    +  T  EAL
Sbjct: 1   GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127
           LLE  M+ R  P FNILL DD+ +PY+ +        +   R  +T       Y+GPF S
Sbjct: 61  LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTFYYGPFPS 120

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
               +  +                        L  +    +G       S  ++    + 
Sbjct: 121 GYGAKPILKL----------------------LQHEALYENGLLIKNQDSSFWVNQFAKI 158

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244
           K+ LS  N+N   ++   M+ A     +E A+  RD L  L  ++       ++    D 
Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
           F+   ++ L      F+ +G         L      +  + +  F  QFY DK  P+N +
Sbjct: 219 FAYKTDEKLIYATVLFYRYGILINKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           + EE  +  L   S +K    K+             +       H     +L    S   
Sbjct: 277 VQEEILKYDLNLSSNYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            L  +     L      I I+DNS+I   + VG  +V       K+ YRKFNL     ++
Sbjct: 337 SLNKYLNLSKLK----NIVIFDNSNINNINPVGVAIVYTNGIKNKSLYRKFNLEALSYRS 392

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
             D   +R  + + FS     ++                 D++I DGG  Q++ A+  LK
Sbjct: 393 -ADVDYIRQSITKFFSSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543
            L +   I +I + K                  + +   D  L+ ++ +++ E  RFA +
Sbjct: 436 FLGL--NIPVIGLVKNEHHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489

Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
             R R+K  +    L  I G+G   ++ LL  F +  
Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNYFKSYA 526


>gi|25900611|emb|CAD13169.1| UvrC protein [Mycoplasma agalactiae]
          Length = 526

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 133/577 (23%), Positives = 223/577 (38%), Gaps = 59/577 (10%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           GVY   D    VLYVGKA NL+KR+  Y     ++++ + ++S + +    +  T  EAL
Sbjct: 1   GVYLWKDAKQNVLYVGKAKNLRKRLLQYFDGAINSYKTSKLMSLVADFEVYICKTNKEAL 60

Query: 71  LLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFAS 127
           LLE  M+ R  P FNILL DD+ +PY+ +        +   R  +T       Y+GPF S
Sbjct: 61  LLEKAMVDRFNPEFNILLLDDRKYPYLKVQLLKDSLLITLSRKVNTKYTKNTLYYGPFPS 120

Query: 128 VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
               +  +  LQ      S                      G       S  ++    + 
Sbjct: 121 GYGAKPILKLLQHEALYES----------------------GLLIKNNDSSFWVNQFAKI 158

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM---DC 244
           K+ LS  N+N   ++   M+ A     +E A+  RD L  L  ++       ++    D 
Sbjct: 159 KEILSFKNNNYLNELTNKMHTAANNMQFELALFLRDGLTYLKKLKESQIIELSQYKNIDV 218

Query: 245 FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENIL 304
           F+   ++ L      F+ +G         L      +  + +  F  QFY DK  P+N +
Sbjct: 219 FAYKTDEKLIYATVLFYRYGVLISKVN--LTIPLGISIDESIRVFFEQFYADKILPDNFI 276

Query: 305 LSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQM 364
           + E+  +  L   S +K    K+             +       H     +L    S   
Sbjct: 277 VQEKILKYDLNLSSDYKFISPKIGTNKKVLDLALLNLNDYYEKEHLIMQNQLEKADSMLS 336

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            L  +     L      I I+DNS+I   + VG  +V       K+ YRKFNL     ++
Sbjct: 337 SLNKYLNLPKLK----NIVIFDNSNINNINPVGVAIVYTNGIKSKSLYRKFNLEALSYRS 392

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
             D   +R  + + F+     ++                 D++I DGG  Q++ A+  LK
Sbjct: 393 -ADVDYIRQSITKFFNSDKNTKDF----------------DLIITDGGLQQVNEAKKTLK 435

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY-FIQRLRDEAHRFAIT 543
            L +   I +I + K                  + +   D  L+ ++ +++ E  RFA +
Sbjct: 436 VLGI--NIPVIGLVKNEYHKTRA--LIDLNLNEIYV--NDLELHNYLAQIQIEVDRFAKS 489

Query: 544 THRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
             R R+K  +    L  I G+G   ++ LL  F +  
Sbjct: 490 HFRNRQKISSLEGKLRNIKGLGHNMEQKLLNHFKSYA 526


>gi|315302791|ref|ZP_07873557.1| excinuclease ABC subunit C [Listeria ivanovii FSL F6-596]
 gi|313628837|gb|EFR97204.1| excinuclease ABC subunit C [Listeria ivanovii FSL F6-596]
          Length = 388

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 108/413 (26%), Positives = 185/413 (44%), Gaps = 39/413 (9%)

Query: 215 YESAIIHRDRLAALSHIQNHNDSIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCT 271
           +E A   RD++ A+           N     D F    +K   C+Q  F   G+      
Sbjct: 1   FEKAGEFRDQINAIETTMEKQKMTMNDFLDRDVFGYAIDKGWMCVQVFFIRQGKLIERDV 60

Query: 272 FFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITV 331
                 +++    +         T+   P+ I L ++ +  ++  +          KI V
Sbjct: 61  SQFPFYNDADEDFLTFIGQFYQKTNHIPPKEIYLPDDVDSEAVQAVVP------DTKIIV 114

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLS----TEISHQMILKDFTKKFALPHIPKRIEIYDN 387
           P++G K+ +++ A  NA  +  +K       E      ++   +   +P    R+E +DN
Sbjct: 115 PQRGNKKDLVKLAYKNAKIALNEKFMLLERNEERTVGAVERLGEAMGIPTPS-RVEAFDN 173

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447
           S+I G   V  MV   +    KN YRK+ +    V+  DD A MR V+ RR+ +++K   
Sbjct: 174 SNIHGTDPVSAMVTFLDGKPSKNDYRKYKIKT--VEGPDDYATMREVIRRRYWRVLKEG- 230

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL-KKLNVENRITIISIAKGPKRSAG 506
                           PD++++DGGKGQ+ +A+ VL  +L ++  I +  +AK  K    
Sbjct: 231 -------------LPMPDLILIDGGKGQIDSAKDVLTNELGLD--IPVAGLAKDDKHRTS 275

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGP 565
               F    E + L       Y +QR++DE HRFAIT HR+ R K    S LD I G+GP
Sbjct: 276 Q-LLFGDPLEIIPLERNSQEFYLLQRMQDEVHRFAITFHRQLRSKTGFQSILDGIPGVGP 334

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH---FHKNTSHTP 615
            RK+ LL+ FG++K +  +S   +    G+   +A +++ H   F++  ++T 
Sbjct: 335 GRKKKLLKHFGSMKKLKEASISEIKEA-GVPLNVAEEVHKHITAFNEKANNTE 386


>gi|213854703|ref|ZP_03382943.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 331

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 109/343 (31%), Positives = 178/343 (51%), Gaps = 27/343 (7%)

Query: 271 TFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSEEAEETSLLEISFFKQYGYK 326
           ++F K    +   +++  F+ QFY      +  P  ILL     + +LL  S  +  G +
Sbjct: 2   SYFPKVPGGTELGEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRR 61

Query: 327 VKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYD 386
           + +    +G++ + ++ A  NA  +   KLS + +    L        LP I  R+E +D
Sbjct: 62  IHVQTKPRGDRARYLKLARTNAATALVTKLSQQSTITQRLTALATVLKLPAIK-RMECFD 120

Query: 387 NSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNE 446
            SH MG   V   VV   NG ++ +YR++N+    +   DD A M  VL RR+ + I+  
Sbjct: 121 ISHTMGEQTVASCVVFDANGPLRAEYRRYNI--AGITPGDDYAAMNQVLRRRYGKAIEES 178

Query: 447 ENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKR 503
           +                PDV+++DGGKGQL+ A+ V  +L+V   ++R  ++ +AKG  R
Sbjct: 179 K---------------IPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGADR 223

Query: 504 SAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEIN 561
            AG+E  F   +GE   L    P L+ IQ +RDE+H  AI  HRK+R K    S L+ I 
Sbjct: 224 KAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIE 283

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A KI+
Sbjct: 284 GVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 326


>gi|261337408|ref|ZP_05965292.1| excinuclease ABC subunit C [Bifidobacterium gallicum DSM 20093]
 gi|270277793|gb|EFA23647.1| excinuclease ABC subunit C [Bifidobacterium gallicum DSM 20093]
          Length = 841

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 161/303 (53%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
            + Q+P  PGVY+  D  GRV+YVGKA NL+ R+ +Y    +    R   M+    ++ +
Sbjct: 50  KTSQIPAEPGVYKWRDGQGRVIYVGKAKNLRNRLSNYFQPLHQLHPRTQTMVLTARSLEW 109

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+EAL LE   IK   PRFN++ RDDK++PY+ ++   +I   +  R        
Sbjct: 110 TVVGTELEALTLEYTWIKEFDPRFNVVFRDDKTYPYLAVSVGERIARTWVTRSRKRRDTR 169

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  + K++++L RTF +R+C  +VF+      RPCLL  I +CS PC G IS+
Sbjct: 170 YFGPYAKVWDLRKSLDTLLRTFPVRTCTPAVFKKAQLTNRPCLLASIGKCSAPCVGRISA 229

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           + + + V +    L+G    +    + R M QA+   ++E A   RD++  L ++   N 
Sbjct: 230 QDHRQLVSQLVGVLTGRIGQSYIADLTRQMKQASQDLEFEKAARLRDQIGMLRNVAQQNA 289

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            + ++    D F +  ++  A +   F   G  RG   + ++   + ++A +L+  + Q 
Sbjct: 290 VVLDQDVDADVFGIASDELEASVHAFFVRGGSIRGERNWSVERIEDVSDADLLADLIVQA 349

Query: 294 YTD 296
           Y+ 
Sbjct: 350 YSQ 352



 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 97/359 (27%), Positives = 161/359 (44%), Gaps = 48/359 (13%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +L+         LE       G  V I VP++G K+ ++++A  NA ++  +  
Sbjct: 476 APIPREVLVPLLPTRADELERWLSSMRGSAVSIRVPQRGSKKDLMQRAQDNASQALQRSK 535

Query: 357 STEISHQ----MILKDFTKKFALPHIPKRIEIYDNSHIM-GCSAVGCMVVVGENGFVKNQ 411
            + IS        + D  +   L   P RIE YD S+ + G   V  MVV  +    K++
Sbjct: 536 MSRISDMAARTEAMNDVAQALGLAEAPLRIECYDISNTVGGAYQVASMVVFEDAMAKKSE 595

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQ----------------------------- 441
           YR+F +  +D K   DD + +   L RRF                               
Sbjct: 596 YRRFAIRGDDGKGALDDLSALYETLTRRFRHGNIAGDTGESIDNERRVRDQQASQDQNRQ 655

Query: 442 ------LIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495
                 +  ++             F   P+++++DGG  Q+ AA   L    V++ + + 
Sbjct: 656 SDGDDGMQSSDGPSTVQQNTDRRHFAYKPNLIVVDGGYPQVLAAAKALHDCGVDD-VAVC 714

Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAY 554
            +AK  +     E +       ++L  +   +Y +QR+RDE+HRFAIT HR+ RRK A  
Sbjct: 715 GLAKRLE-----EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQARRKGALR 769

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           S LD+I GIGP  ++ LL  FG+V+ + ++S E L +++G+ K  A  I++  H + S 
Sbjct: 770 SVLDDIPGIGPSYQKKLLAHFGSVRAMRQASLEDLEAVKGVGKAKAKSIFDALHAHDSD 828


>gi|238809581|dbj|BAH69371.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 550

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 127/585 (21%), Positives = 228/585 (38%), Gaps = 64/585 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PG+Y   D   +V+YVGKA NL+KR+  Y     ++++ + ++ +I      +
Sbjct: 10  LKNVSTAPGIYLWKDKNDQVIYVGKAKNLRKRMHQYFEGAINSYKTSRLVEEIRAYEVFI 69

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS-- 120
             T  EALLLE   I +  P +NILL DD+ +PY+ +    +   +   R       +  
Sbjct: 70  CKTNKEALLLEKLYIDKYNPEYNILLLDDRRYPYLKVQLSDRGLDISLSRKIGKKNETNK 129

Query: 121 --YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             YFGPF       + +  L+R  F                         G        +
Sbjct: 130 LFYFGPFPIGYGSIQILKLLEREAFYE----------------------KGLKIKNNDPK 167

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS- 237
            + E  ++ K  LS  +++   +I   M +    E +E A   +     L  +       
Sbjct: 168 FWQEKFNKIKSILSFKDNSYINEIKEKMFKEAETEHFELARDLKLSWEYLKKLNEEQIIE 227

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
               + +D F+     N+  +   F+  G         L  D +    + L  F  ++Y 
Sbjct: 228 LKDIHNLDVFAYKTVDNIIYMTILFYRSGLLINKDNQALNIDIDE--IETLEKFFNKYYE 285

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSH--- 352
           +K  P+ IL+ E+                  + I  PK G+K++++E A +N        
Sbjct: 286 NKIKPDEILVEEKINNL-------NLNLDENLNIVTPKIGDKKRVLEIAQLNLEEYFSKE 338

Query: 353 TQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQY 412
              +  +  H +++ +  KK       K I ++DNS++   + VG  +V       KN Y
Sbjct: 339 HLLIKNKNDHALLMLEEFKKLIKIDSLKNIILFDNSNLANSNPVGVAIVYSNGLKNKNLY 398

Query: 413 RKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           RKFN H +    + D   M+  +++ FS     ++                 D++I+DGG
Sbjct: 399 RKFN-HIDIYSREADVEYMKESIKKYFSSADNKKDF----------------DLIIVDGG 441

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQR 532
             Q+  A+ VL  L++  +I I+ + K             +    +       +L F+  
Sbjct: 442 LAQIHEAKKVLFDLDI--KIPIVGLVKDDFHRTRALIDLQENLVKI---KNKDLLNFLAS 496

Query: 533 LRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFG 576
           ++ E  RFA +  R R R       L  I G+G   +  LL +  
Sbjct: 497 MQIEVDRFAKSHLRNRNRITTFEGSLQSIKGLGKCAETKLLNTLK 541


>gi|325523988|gb|EGD02183.1| excinuclease ABC subunit C [Burkholderia sp. TJI49]
          Length = 457

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 103/341 (30%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
            A++L  F+ Q Y     P  +++S       LLE+   +Q G+KV +    QG++R  +
Sbjct: 121 EAEVLDAFIAQHYLGNRVPPVLVVSHAPASRDLLELL-SEQAGHKVSLVRQPQGQRRAWL 179

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTKK---FALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +   +            RIE +D SH MG +    
Sbjct: 180 SMAEQNAQIALARLLSEQGSQQARTRALAETLGFECDDLATLRIECFDISHTMGEATQAS 239

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +     +YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 240 CVVYHHHKMQSGEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEQAAQAAAADDAAGI 297

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           +    +Q  +    P++V++DGGKGQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 298 DGESTRQAEASRLLPNIVLIDGGKGQVEIARQVFTELGLDTSM-LVGVAKGEGRKVGLET 356

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                    L L      L  + ++RDEAHRFAIT  R +R KA   S L+E+ G+G  R
Sbjct: 357 LVFADSRTPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKARQTSRLEELEGVGAKR 416

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S E LAS++GIS  +A +IY   H
Sbjct: 417 RQRLLARFGGLRGVVAASVEELASVDGISHALAEQIYRQLH 457


>gi|330944503|gb|EGH46489.1| excinuclease ABC subunit C [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 213

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 92/211 (43%), Positives = 133/211 (63%), Gaps = 1/211 (0%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D    +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E EALLLE 
Sbjct: 1   MFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQ 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
            +IK  +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  A+ ++
Sbjct: 61  TLIKEWRPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSAGAIRES 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGG 194
           ++ LQ+TF +R C DS F++RTRPCL +QIKRC GPC G +  E Y E V  +  FL G 
Sbjct: 120 LSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGR 179

Query: 195 NHNLKEKIARNMNQATLKEDYESAIIHRDRL 225
           ++ L +++  +M +A +  D+E A   RD++
Sbjct: 180 SNALSDELNASMEKAAMALDFERAAELRDQV 210


>gi|167816741|ref|ZP_02448421.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 91]
          Length = 388

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 52  ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 110

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 111 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 170

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 171 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 228

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 229 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 287

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 288 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 347

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 348 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 388


>gi|167895232|ref|ZP_02482634.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 7894]
          Length = 396

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 60  ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 118

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 119 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 178

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 179 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 236

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 237 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 295

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 296 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 355

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 356 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 396


>gi|167846645|ref|ZP_02472153.1| excinuclease ABC, C subunit [Burkholderia pseudomallei B7210]
          Length = 394

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 58  ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 116

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 117 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 176

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 177 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 234

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 235 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 293

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 294 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 353

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 354 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 394


>gi|167739539|ref|ZP_02412313.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 14]
          Length = 383

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 47  ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 105

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 106 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 165

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 166 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 223

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 224 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 282

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 283 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 342

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 343 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 383


>gi|167903617|ref|ZP_02490822.1| excinuclease ABC, C subunit [Burkholderia pseudomallei NCTC 13177]
          Length = 394

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 58  ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 116

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 117 TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 176

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 177 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 234

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 235 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 293

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 294 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 353

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 354 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 394


>gi|167720547|ref|ZP_02403783.1| excinuclease ABC, C subunit [Burkholderia pseudomallei DM98]
          Length = 366

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 30  ETEVLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWL 88

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 89  TMAEQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 148

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 149 CVVYHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 206

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 207 DGNAVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 265

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 266 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 325

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 326 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 366


>gi|167619247|ref|ZP_02387878.1| excinuclease ABC, C subunit [Burkholderia thailandensis Bt4]
          Length = 397

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/341 (29%), Positives = 169/341 (49%), Gaps = 18/341 (5%)

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKII 341
             ++L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +
Sbjct: 61  ETEVLEAFIAQHYLGNRVPPILVVSHAIANRELIDLLV-EQAGHKVALVRQPQGQKRAWL 119

Query: 342 EQALINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGC 398
             A  NA  +  + LS + S Q   +         +      RIE +D SH MG +    
Sbjct: 120 AMAEQNARLALARLLSEQGSQQARARSLADVLGYESDDLAQLRIECFDISHTMGEATQAS 179

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NL 449
            VV   +    ++YR++N+    +   DD A MR VL RR+ ++++             +
Sbjct: 180 CVVYHHHKMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGI 237

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
           + +      S    P++V++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E 
Sbjct: 238 DGNAVHAAASAGRLPNIVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLET 296

Query: 510 FFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLR 567
                G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R
Sbjct: 297 LIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKR 356

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 357 RQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 397


>gi|212715858|ref|ZP_03323986.1| hypothetical protein BIFCAT_00764 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661225|gb|EEB21800.1| hypothetical protein BIFCAT_00764 [Bifidobacterium catenulatum DSM
           16992]
          Length = 716

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 160/303 (52%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 19  KTSDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYQLHPRTQTMVLTARSLEW 78

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+E+L LE   IK   PRFN++ RDDK++PY+ I+    +P ++  R        
Sbjct: 79  TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSAEHVPRVWVTRSRKRRDTR 138

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  +++ L +TF +R+C+ +V+       RPCLL  I +CS PC G IS+
Sbjct: 139 YFGPYAKVWDLRHSLDRLLKTFPVRTCSQNVYHKAEVTRRPCLLASIGKCSAPCVGRISA 198

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            ++ +   +    L+G    +   ++ R M +A+ + ++E A   RD++  LS +   N 
Sbjct: 199 AEHRKMCEQLVGVLTGRIGKSYIAQLTREMKEASAELEFEKAARLRDQIQMLSTVVEQNA 258

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F +  ++  A +   +   G  RG   + ++   + T+ ++++  + Q 
Sbjct: 259 VVFDSDVDADFFGVESDELEASVHAFYVRAGSIRGERNWSVERVEDVTDEELIADLIVQV 318

Query: 294 YTD 296
           Y++
Sbjct: 319 YSE 321



 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 154/343 (44%), Gaps = 32/343 (9%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E      LE       G  V I    +G K++++++A  NA ++  +  
Sbjct: 380 SPVPREVIVPIEPARREELESWLSGLRGGAVNIRTASRGGKKQLLDRANDNARQAMQRSK 439

Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411
              IS        + D  K   L   P RIE YD S+ +G    V  MVV  +    K++
Sbjct: 440 MNRISDMGARTTAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 499

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLI-------------------KNEENLNF 451
           YR+F +   D +   DD + +   L RRF                       +  E  + 
Sbjct: 500 YRRFAIRGADGQGALDDLSALYETLTRRFRHGNIAGDSGESMDNERRASEQGEQVEKPSV 559

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
                 + F   P++V++DGGK Q+ AA   L+   V++ + +  +AK  +     E + 
Sbjct: 560 QQNVDRHHFAYKPNLVVVDGGKPQVMAAAKALEDCGVDD-VAVCGLAKRLE-----EVWV 613

Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570
                 ++L  +   +Y +QR+RDE+HRFAIT HR+ R+K A  S LD+I G+G   ++ 
Sbjct: 614 PDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALDDIPGVGETYQKR 673

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           LL  FG+V+ +  ++ E    ++G+ K  A  IY   H     
Sbjct: 674 LLNHFGSVRAMREANAEDFEQVKGVGKAKAEAIYQALHARDGQ 716


>gi|225352081|ref|ZP_03743104.1| hypothetical protein BIFPSEUDO_03691 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157328|gb|EEG70667.1| hypothetical protein BIFPSEUDO_03691 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 767

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 161/303 (53%), Gaps = 8/303 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    N+ +
Sbjct: 53  KTSDIPAQPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYQLHPRTQTMVLTARNLEW 112

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+E+L LE   IK   PRFN++ RDDK++PY+ I+   ++P ++  R        
Sbjct: 113 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERVPRVWVTRSRKRRDTR 172

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  +++ L +TF +R+C+ +V+       RPCLL  I +CS PC G IS 
Sbjct: 173 YFGPYAKVWDLRHSLDRLLKTFPVRTCSQNVYHKAEITHRPCLLASIGKCSAPCIGRISV 232

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           E++ +   +    L+G    +   ++ R M +A+ + ++E A   RD++  LS +   N 
Sbjct: 233 EEHRKMCEQLIGVLTGRIGKSYIAQLTREMKEASDELEFEKAARLRDQIQMLSTVGEQNA 292

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F +  ++  A +   +   G  RG   + ++   + T+ ++++  + Q 
Sbjct: 293 VVFDSDVDADFFGVDSDELEASVHAFYVRAGSIRGERNWSVERVEDVTDEELIADLIVQV 352

Query: 294 YTD 296
           Y++
Sbjct: 353 YSE 355



 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 32/346 (9%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E      LE       G  V I V  +G+KR+++++A  NA ++  +  
Sbjct: 414 SPVPREVIVPIEPARREELESWLSGLRGGAVSIRVASRGDKRRLLDRANDNAKQAMQRSK 473

Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ +G    V  MVV  +    K++
Sbjct: 474 MSRISDMGARSTAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 533

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRF----------------SQLIKNEE---NLNF 451
           YR+F +   D +   DD + +   L RRF                 +  ++ +       
Sbjct: 534 YRRFAIRGADGQGALDDLSALYETLTRRFQHGNIAGDSGESMDNERRASEHGDQTHEPTV 593

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
                 + F   P++V++DGGK Q+ AA   L+   V++ + +  +AK  +     E + 
Sbjct: 594 QQNTNRHHFAYKPNLVVVDGGKPQVMAAAKALEDCGVDD-VAVCGLAKRLE-----EVWV 647

Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRL 570
                 ++L  +   +Y +QR+RDE+HRFAIT HR+ R+K A  S LD+I G+G   ++ 
Sbjct: 648 PDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQTRRKGALRSALDDIPGVGEAYQKR 707

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           LL  FG+V+ +  +  E    ++G+ K  A  IY   H +     T
Sbjct: 708 LLSHFGSVRAMREADVEDFEQVKGVGKAKAAAIYQALHAHDGQPST 753


>gi|213857576|ref|ZP_03384547.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 219

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 92/210 (43%), Positives = 134/210 (63%), Gaps = 2/210 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+I ++     P L  HR +   +G YF
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLS-GDTHPRLAMHRGAKHAKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GPF +  AV +T+  LQ+ F +R C +SV+R+R+RPCL +QI RC GPC    +S E+Y 
Sbjct: 130 GPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYT 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATL 211
           + V   + FLSG +  +  ++   M +A+ 
Sbjct: 190 QQVEYVRLFLSGKDDQVLTQLIARMEKASQ 219


>gi|195941240|ref|ZP_03086622.1| UvrC excinuclease ABC subunit C [Escherichia coli O157:H7 str.
           EC4024]
          Length = 318

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 108/330 (32%), Positives = 173/330 (52%), Gaps = 27/330 (8%)

Query: 284 QILSYFLRQFYTD----KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRK 339
           +++  F+ QFY      +  P  ILL     + +LL  S  +  G K+ +    +G++ +
Sbjct: 2   EVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRAR 61

Query: 340 IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
            ++ A  NA  + T KLS + +    L        LP +  R+E +D SH MG   V   
Sbjct: 62  YLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVK-RMECFDISHTMGEQTVASC 120

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           VV   NG ++ +YR++N+    +   DD A M  VL RR+ + I + +            
Sbjct: 121 VVFDANGPLRAEYRRYNI--TGITPGDDYAAMNQVLRRRYGKAIDDSK------------ 166

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKG 515
               PDV+++DGGKGQL+ A+ V  +L+V   +N   ++ +AKG  R AG+E  F   +G
Sbjct: 167 ---IPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEG 223

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQS 574
           E   L    P L+ IQ +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+ 
Sbjct: 224 EGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKY 283

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIY 604
            G ++ +  +S E +A + GIS+ +A KI+
Sbjct: 284 MGGLQGLRNASVEEIAKVPGISQGLAEKIF 313


>gi|308235009|ref|ZP_07665746.1| excinuclease ABC subunit C [Gardnerella vaginalis ATCC 14018]
          Length = 743

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/320 (28%), Positives = 161/320 (50%), Gaps = 8/320 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  G+V+YVGKA +L+ R+ +Y    N    R   M+    ++ +
Sbjct: 60  KTSDIPNQPGVYKWRDEKGKVIYVGKAKSLRNRLSNYFQPLNQLHPRTQSMVLTARSLEW 119

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+EAL LE   IK   PRFN++ +DDK++PY+ ++     P ++  R+ ++    
Sbjct: 120 TVVNTELEALTLEYTWIKEFNPRFNVVFKDDKTYPYLAVSVNDDFPRVWITRNRNSKSTR 179

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  +++SL +TF +R+C  SVF       RPCLL  I +CS PC  ++  
Sbjct: 180 YFGPYAKVWQLRHSLDSLLKTFPVRTCRQSVFVKAHKTGRPCLLAAIGKCSAPCIAKVDR 239

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           + +   V +    L+G    +    + R M +++   D+E+A   RD++     +   N 
Sbjct: 240 KTHRHNVEQLVGVLTGSIGDSYINDLTREMKESSDNLDFENAAKIRDKINIFKIVMQQNS 299

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F    +   AC+   F   G  RG   + ++   + +NA I++  L + 
Sbjct: 300 VVFDENVEADVFGFSGDSLEACVHAFFVREGLLRGEKNWQVERSEDISNADIIANLLMRV 359

Query: 294 YTDKPCPENILLSEEAEETS 313
           Y++     N+   +  +   
Sbjct: 360 YSEYESNNNLQYEDSLKIEQ 379



 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/324 (30%), Positives = 157/324 (48%), Gaps = 18/324 (5%)

Query: 298 PCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           P P  I++  E    +   LE    K  G KV I VP++G+KR ++ QA  NA +S  + 
Sbjct: 426 PIPREIIIPFEISQNQCENLENWLSKLRGSKVSIKVPERGDKRNLMNQANDNAKQSLMRL 485

Query: 356 LSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHI-MGCSAVGCMVVVGENGFVKN 410
            S+ IS        + +  +   +   P RIE YD S+   G   V  MVV  +     +
Sbjct: 486 KSSRISSLDARSSAMNEVAEALGMSESPLRIECYDISNTVNGEYQVASMVVFEDGIAKPS 545

Query: 411 QYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIK---NEENLNFHPKKQEYSFPSWPDV 466
           +YR+F++  +D   + DD + +   + RRF        +++      K +   F   P++
Sbjct: 546 EYRRFSIKGSDGNGKLDDLSALYETISRRFKHTSSGDVDDDYGENLEKSKYKKFAYTPNL 605

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGG+ Q  AAQ  +    +   I +  +AK  +     E +       ++L      
Sbjct: 606 IVVDGGREQARAAQKAMIDCGI-KNIVVCGLAKKLE-----EVWLPNNEYPIILKRSSQG 659

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           LY +QR RDE+HRFAIT HR++R++    S LD I GIG   K+ LL  FG+VK +  +S
Sbjct: 660 LYLLQRARDESHRFAITYHRQKRRRAMLNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDAS 719

Query: 586 PETLASIEGISKKIACKIYNHFHK 609
            + L  + GI +  A  IY   HK
Sbjct: 720 VDDLQKVSGIGQAKAKSIYESLHK 743


>gi|311114686|ref|YP_003985907.1| excision endonuclease subunit UvrC [Gardnerella vaginalis ATCC
           14019]
 gi|310946180|gb|ADP38884.1| excision endonuclease subunit UvrC [Gardnerella vaginalis ATCC
           14019]
          Length = 749

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 91/320 (28%), Positives = 161/320 (50%), Gaps = 8/320 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            +  +P  PGVY+  D  G+V+YVGKA +L+ R+ +Y    N    R   M+    ++ +
Sbjct: 66  KTSDIPNQPGVYKWRDEKGKVIYVGKAKSLRNRLSNYFQPLNQLHPRTQSMVLTARSLEW 125

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+EAL LE   IK   PRFN++ +DDK++PY+ ++     P ++  R+ ++    
Sbjct: 126 TVVNTELEALTLEYTWIKEFNPRFNVVFKDDKTYPYLAVSVNDDFPRVWITRNRNSKSTR 185

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  +++SL +TF +R+C  SVF       RPCLL  I +CS PC  ++  
Sbjct: 186 YFGPYAKVWQLRHSLDSLLKTFPVRTCRQSVFVKAHKTGRPCLLAAIGKCSAPCIAKVDR 245

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           + +   V +    L+G    +    + R M +++   D+E+A   RD++     +   N 
Sbjct: 246 KTHRHNVEQLVGVLTGSIGDSYINDLTREMKESSDNLDFENAAKIRDKINIFKIVMQQNS 305

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F    +   AC+   F   G  RG   + ++   + +NA I++  L + 
Sbjct: 306 VVFDENVEADVFGFSGDSLEACVHAFFVREGLLRGEKNWQVERSEDISNADIIANLLMRV 365

Query: 294 YTDKPCPENILLSEEAEETS 313
           Y++     N+   +  +   
Sbjct: 366 YSEYESNNNLQYEDSLKIEQ 385



 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/324 (30%), Positives = 157/324 (48%), Gaps = 18/324 (5%)

Query: 298 PCPENILLSEEA--EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
           P P  I++  E    +   LE    K  G KV I VP++G+KR ++ QA  NA +S  + 
Sbjct: 432 PIPREIIIPFEISQNQCENLENWLSKLRGSKVSIKVPERGDKRNLMNQANDNAKQSLMRL 491

Query: 356 LSTEIS----HQMILKDFTKKFALPHIPKRIEIYDNSHI-MGCSAVGCMVVVGENGFVKN 410
            S+ IS        + +  +   +   P RIE YD S+   G   V  MVV  +     +
Sbjct: 492 KSSRISSLDARSSAMNEVAEALGMSESPLRIECYDISNTVNGEYQVASMVVFEDGIAKPS 551

Query: 411 QYRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQLIK---NEENLNFHPKKQEYSFPSWPDV 466
           +YR+F++  +D   + DD + +   + RRF        +++      K +   F   P++
Sbjct: 552 EYRRFSIKGSDGNGKLDDLSALYETISRRFKHTSSGDVDDDYGENLEKSKYKKFAYTPNL 611

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGG+ Q  AAQ  +    +   I +  +AK  +     E +       ++L      
Sbjct: 612 IVVDGGREQARAAQKAMIDCGI-KNIVVCGLAKKLE-----EVWLPNNEYPIILKRSSQG 665

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           LY +QR RDE+HRFAIT HR++R++    S LD I GIG   K+ LL  FG+VK +  +S
Sbjct: 666 LYLLQRARDESHRFAITYHRQKRRRAMLNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDAS 725

Query: 586 PETLASIEGISKKIACKIYNHFHK 609
            + L  + GI +  A  IY   HK
Sbjct: 726 VDDLQKVSGIGQAKAKSIYESLHK 749


>gi|254992859|ref|ZP_05275049.1| excinuclease ABC subunit C [Listeria monocytogenes FSL J2-064]
          Length = 223

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/217 (35%), Positives = 120/217 (55%), Gaps = 6/217 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+        + CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLP----NKVCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHR 222
           E   FL+GG   +K  + + M +A    ++E A   R
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQEAAENMEFEKAGEFR 223


>gi|254994507|ref|ZP_05276697.1| excinuclease ABC subunit C [Listeria monocytogenes FSL J2-064]
          Length = 355

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 170/373 (45%), Gaps = 33/373 (8%)

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F    +K   C+Q  F   G+            +++    +          +   P
Sbjct: 6   DRDVFGYAIDKGWMCVQVFFIRQGKLIERDVSQFPFYNDADEDFLTFIGQFYQKANHIPP 65

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS--- 357
           + I L ++ +  ++  +          KI VP++G K+ +++ A  NA  +  +K     
Sbjct: 66  KEIYLPDDVDSEAVQAVVP------DTKIIVPQRGNKKDLVKLAYKNAKIALNEKFMLLE 119

Query: 358 -TEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             E      ++   +   +P    R+E +DNS+I G   V  MV   +    KN YRK+ 
Sbjct: 120 RNEERTVGAVERLGEAMGIPTPS-RVEAFDNSNIHGTDPVSAMVTFLDGKPSKNDYRKYK 178

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    V+  DD A MR V+ RR+ +++K E                 PD++++DGGKGQ+
Sbjct: 179 IKT--VEGPDDYATMREVIRRRYWRVLKEE--------------LPMPDLILIDGGKGQI 222

Query: 477 SAAQGVL-KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
            +A+ VL  +L ++  I +  +AK  K        F    E + L       Y +QR++D
Sbjct: 223 DSAKDVLTNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIVPLERNSQEFYLLQRMQD 279

Query: 536 EAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E HRFAIT HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +    G
Sbjct: 280 EVHRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASVEEIKEA-G 338

Query: 595 ISKKIACKIYNHF 607
           +   +A +++ H 
Sbjct: 339 VPLNVAEEVHKHI 351


>gi|171742955|ref|ZP_02918762.1| hypothetical protein BIFDEN_02077 [Bifidobacterium dentium ATCC
           27678]
 gi|283456023|ref|YP_003360587.1| excinuclease ABC subunit C [Bifidobacterium dentium Bd1]
 gi|171278569|gb|EDT46230.1| hypothetical protein BIFDEN_02077 [Bifidobacterium dentium ATCC
           27678]
 gi|283102657|gb|ADB09763.1| Excinuclease ABC subunit C [Bifidobacterium dentium Bd1]
          Length = 772

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 89/315 (28%), Positives = 158/315 (50%), Gaps = 8/315 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 51  KPSDIPARPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQTMVLTARSLEW 110

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+E+L LE   IK   PRFN++ RDDK++PY+ I+   ++P ++  R        
Sbjct: 111 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERVPRVWITRSRKRRDTR 170

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  +++ L +TF +R+C+ SV+       RPCLL  I +CS PC G I  
Sbjct: 171 YFGPYAKVWDLRHSLDRLLKTFPVRTCSQSVYHKAEVTNRPCLLASIGKCSAPCVGRIGV 230

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +++     +    L+G    +   ++ R M  A+ + ++E A   RD++  L  +   N 
Sbjct: 231 DEHRAMSEQLVGVLTGRIGKSYIAQLTREMKAASAELEFEQAARLRDQIQMLQTVIEQNA 290

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F +  ++  A +   F   G  RG   + ++   +  + ++++  + Q 
Sbjct: 291 VVFDSDVDADIFGIDSDELEASVHAFFVRAGSIRGERNWSVERVEDIGDEELIADLIMQV 350

Query: 294 YTDKPCPENILLSEE 308
           Y++      + +  E
Sbjct: 351 YSEATGEAGLNIEHE 365



 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 97/348 (27%), Positives = 159/348 (45%), Gaps = 37/348 (10%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 418 APVPREVVVPIEPARREDLERWLSGLRGSAVTIRVASRGDKKQLMDRASDNARQAMQRSK 477

Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ +G    V  MVV  +    K++
Sbjct: 478 MSRISDMGARTTAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 537

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQ---------LIKNEE-------------- 447
           YR+F +   D +   DD   +   L RRF            + NE+              
Sbjct: 538 YRRFAIRGADGQGALDDLNALYETLTRRFRHGNIAGDTGESMDNEQREARTSRTCENTDP 597

Query: 448 -NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506
            N+          F   P++V++DGG+ Q+ AA   L+   V++ + +  +AK  +    
Sbjct: 598 GNVPVRQNTDRRHFAYKPNLVVVDGGRPQVMAAARALEDCGVDD-VAVCGLAKRLE---- 652

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565
            E +       ++L  +   +Y +QR+RDE+HRFAIT HR+ R+K A  S LD+I GIG 
Sbjct: 653 -EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRRTRRKGALRSVLDDIPGIGE 711

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
             ++ LL  FG+V+ +  +S E    ++GI +  A  IY+  H     
Sbjct: 712 SYQKRLLNHFGSVRAMREASVEDFEQVKGIGRAKAESIYHALHAQDQD 759


>gi|167825147|ref|ZP_02456618.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 9]
 gi|167911866|ref|ZP_02498957.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 112]
          Length = 334

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 101/338 (29%), Positives = 168/338 (49%), Gaps = 18/338 (5%)

Query: 285 ILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
           +L  F+ Q Y     P  +++S       L+++   +Q G+KV +    QG+KR  +  A
Sbjct: 1   MLEAFIAQHYLGNRVPPVLVVSHAPANRELIDLLV-EQAGHKVAVVRQPQGQKRAWLTMA 59

Query: 345 LINAHRSHTQKLSTEISHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401
             NA  +  + LS + S Q   +         +      RIE +D SH MG +     VV
Sbjct: 60  EQNARLALARLLSEQGSQQARTRSLADVLGYESDDLAQLRIECFDISHTMGEATQASCVV 119

Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE---------NLNFH 452
              +    ++YR++N+    +   DD A MR VL RR+ ++++             ++ +
Sbjct: 120 YHHHRMQSSEYRRYNI--AGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGIDGN 177

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
                 S    P+VV++DGG+GQ+  A+ V  +L ++  + ++ +AKG  R  G+E    
Sbjct: 178 AVHAAASAGRLPNVVLIDGGRGQVEIARQVFSELGLDISM-LVGVAKGEGRKVGLETLIF 236

Query: 513 KKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRL 570
             G   L L      L  + ++RDEAHRFAIT  R +R K    S L+E+ G+G  R++ 
Sbjct: 237 ADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKRRQR 296

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           LL  FG ++ +  +S + LAS+EGIS+ +A +IY   H
Sbjct: 297 LLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH 334


>gi|309800821|ref|ZP_07694953.1| putative excinuclease ABC subunit C [Bifidobacterium dentium
           JCVIHMP022]
 gi|308222357|gb|EFO78637.1| putative excinuclease ABC subunit C [Bifidobacterium dentium
           JCVIHMP022]
          Length = 399

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 157/315 (49%), Gaps = 8/315 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 51  KPSDIPARPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQTMVLTARSLEW 110

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+E+L LE   IK   PRFN++ RDDK++PY+ I+   ++P ++  R        
Sbjct: 111 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERVPRVWITRSRKRRDTR 170

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  +++ L +TF +R+C+ SV+       RPCLL  I +CS PC G I  
Sbjct: 171 YFGPYAKVWDLRHSLDRLLKTFPVRTCSQSVYHKAEVTNRPCLLASIGKCSAPCVGRIGV 230

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +++     +    L+G    +   ++ R M   + + ++E A   RD++  L  +   N 
Sbjct: 231 DEHRAMSEQLVGVLTGRIGKSYIAQLTREMKATSAELEFEQAARLRDQIQMLQTVIEQNA 290

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F +  ++  A +   F   G  RG   + ++   +  + ++++  + Q 
Sbjct: 291 VVFDSDVDADIFGIDSDELEASVHAFFVRAGSIRGERNWSVERVEDIGDEELIADLIMQV 350

Query: 294 YTDKPCPENILLSEE 308
           Y++      + +  E
Sbjct: 351 YSEATGEAGLNIEHE 365


>gi|306822764|ref|ZP_07456142.1| excision endonuclease subunit UvrC [Bifidobacterium dentium ATCC
           27679]
 gi|304554309|gb|EFM42218.1| excision endonuclease subunit UvrC [Bifidobacterium dentium ATCC
           27679]
          Length = 772

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 157/315 (49%), Gaps = 8/315 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
               +P  PGVY+  D  GRV+YVGKA NL+ R+ +Y         R   M+    ++ +
Sbjct: 51  KPSDIPARPGVYKWRDGEGRVIYVGKAKNLRNRLANYFQPLYQLHPRTQTMVLTARSLEW 110

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           TV  TE+E+L LE   IK   PRFN++ RDDK++PY+ I+   ++P ++  R        
Sbjct: 111 TVVGTELESLTLEYTWIKEFDPRFNVVFRDDKTYPYLAISSGERVPRVWITRSRKRRDTR 170

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISS 177
           YFGP+A V  +  +++ L +TF +R+C+ SV+       RPCLL  I +CS PC G I  
Sbjct: 171 YFGPYAKVWDLRHSLDRLLKTFPVRTCSQSVYHKAEVTNRPCLLASIGKCSAPCVGRIGV 230

Query: 178 EKYMEFVHEAKKFLSGG-NHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +++     +    L+G    +   ++ R M   + + ++E A   RD++  L  +   N 
Sbjct: 231 DEHRAMSEQLVGVLTGRIGKSYIAQLTREMKATSAELEFEQAARLRDQIQMLQTVIEQNA 290

Query: 237 SIYNRM---DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            +++     D F +  ++  A +   F   G  RG   + ++   +  + ++++  + Q 
Sbjct: 291 VVFDSDVDADIFGIDSDELEASVHAFFVRAGSIRGERNWSVERVEDIGDEELIADLIMQV 350

Query: 294 YTDKPCPENILLSEE 308
           Y++      + +  E
Sbjct: 351 YSEATGEAGLNIEHE 365



 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 97/348 (27%), Positives = 160/348 (45%), Gaps = 37/348 (10%)

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
            P P  +++  E      LE       G  V I V  +G+K++++++A  NA ++  +  
Sbjct: 418 APVPREVVVPIEPARREDLERWLSGLRGSAVTIRVASRGDKKQLMDRASDNARQAMQRSK 477

Query: 357 STEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQ 411
            + IS        + D  K   L   P RIE YD S+ +G    V  MVV  +    K++
Sbjct: 478 MSRISDMGARTTAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSE 537

Query: 412 YRKFNLHPNDVKTQ-DDCAMMRMVLERRFSQ---------LIKNEE-------------- 447
           YR+F +   D +   DD + +   L RRF            + NE+              
Sbjct: 538 YRRFAIRGADGQGALDDLSALYETLTRRFRHGNIAGDTGESMDNEQREARISRTCENTDP 597

Query: 448 -NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAG 506
            N+          F   P++V++DGG+ Q+ AA   L+   V++ + +  +AK  +    
Sbjct: 598 GNVPIRQNTDRRHFAYKPNLVVVDGGRPQVMAAARALEDCGVDD-VAVCGLAKRLE---- 652

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGP 565
            E +       ++L  +   +Y +QR+RDE+HRFAIT HR+ R+K A  S LD+I GIG 
Sbjct: 653 -EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRRTRRKGALRSVLDDIPGIGE 711

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
             ++ LL  FG+V+ +  +S E    ++GI +  A  IY+  H     
Sbjct: 712 SYQKRLLNHFGSVRAMREASVEDFEQVKGIGRAKAESIYHALHAQDQD 759


>gi|323223339|gb|EGA07675.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
          Length = 297

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 164/310 (52%), Gaps = 23/310 (7%)

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   KLS +
Sbjct: 1   PGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALITKLSQQ 60

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++N+  
Sbjct: 61  STITQRLTALAAVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNI-- 117

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQL+ A
Sbjct: 118 AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQLAQA 162

Query: 480 QGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRD 535
           + V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ +RD
Sbjct: 163 KAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 222

Query: 536 EAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           E+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A + G
Sbjct: 223 ESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 282

Query: 595 ISKKIACKIY 604
           IS+ +A KI+
Sbjct: 283 ISQGLAEKIF 292


>gi|153216996|ref|ZP_01950760.1| UvrABC system protein C [Vibrio cholerae 1587]
 gi|124113978|gb|EAY32798.1| UvrABC system protein C [Vibrio cholerae 1587]
          Length = 254

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 97/255 (38%), Positives = 146/255 (57%), Gaps = 5/255 (1%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TVT TE EAL+LE 
Sbjct: 1   MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
           N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YFGP+    AV +T
Sbjct: 61  NYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRET 119

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSG 193
           ++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y E VH  + FL G
Sbjct: 120 LHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQG 179

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHN 250
            ++ +   +   M QA+ +  +E A   RD++ A+  +Q       +    +D       
Sbjct: 180 KDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQE 239

Query: 251 KNLACIQTCFFHFGQ 265
             +ACI       G+
Sbjct: 240 NGIACIHILMIRQGK 254


>gi|330813705|ref|YP_004357944.1| excinuclease ABC subunit C [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486800|gb|AEA81205.1| excinuclease ABC subunit C [Candidatus Pelagibacter sp. IMCC9063]
          Length = 259

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 121/271 (44%), Positives = 164/271 (60%), Gaps = 15/271 (5%)

Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402
            A+ NA  S  +K+     +   L    +KF L  +P  IEIYDNSH  G +A+G  V  
Sbjct: 1   MAVKNAKESLQRKIFDSDQNNNSLTLLREKFNLGFVPTLIEIYDNSHTQGTNAIGSFVSF 60

Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462
           G+ GF+KN+YRKF++   ++   DD  MM  V+ERRFS+L+K  E  N            
Sbjct: 61  GKEGFLKNRYRKFDIKNKNINPGDDYGMMNEVIERRFSKLVKQSEGDN------------ 108

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            PD++++DGGKGQ S  +  L +L    ++ II+IAKG  R+ G E F       + L  
Sbjct: 109 VPDLLLIDGGKGQYSVVRSKLDQLGFH-QLPIIAIAKGKNRNDGNETFIYNNK-IIKLEK 166

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
            +P+L+F+QRLRDEAHRFAI THRK+RKK+   SPLDEI GIG  RK+ LL  FG+ K I
Sbjct: 167 NNPLLFFMQRLRDEAHRFAIFTHRKKRKKSFLVSPLDEIPGIGRNRKKTLLNHFGSAKTI 226

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             +S E L  ++GIS+ IA KIYN+FH N +
Sbjct: 227 EGASLEDLKKVDGISELIAKKIYNYFHLNKN 257


>gi|88861508|ref|ZP_01136125.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2]
 gi|88816492|gb|EAR26330.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2]
          Length = 194

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 87/185 (47%), Positives = 123/185 (66%), Gaps = 1/185 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD    V+YVGKA NL+KR+ SY  +N    +   ++  I+ I  T+
Sbjct: 8   LKTLSSEPGVYRMLDKDDHVIYVGKAKNLKKRVSSYFRANIPESKTRALVKNIHQIEVTL 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EALLLE N+IK+  PR+NILLRDDKS+PYIL+T +H+ P +  HR S   +G YF
Sbjct: 68  TNTETEALLLENNLIKQYMPRYNILLRDDKSYPYILVT-EHRHPRIAFHRGSRKQKGDYF 126

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S  AV +++  +Q+ F +R C D+ +R R+RPCL +Q+KRCS PC  ++S E+Y +
Sbjct: 127 GPFPSSGAVSESLRLMQKIFPVRQCEDAYYRARSRPCLQYQLKRCSAPCVDKVSDEEYQQ 186

Query: 183 FVHEA 187
            V   
Sbjct: 187 EVQFV 191


>gi|218512762|ref|ZP_03509602.1| excinuclease ABC subunit C [Rhizobium etli 8C-3]
          Length = 231

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/165 (61%), Positives = 126/165 (76%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P  PGVY+M +  G VLYVGKA +L+KR+ +Y     H++RI  M+ Q  N+ F  T
Sbjct: 61  KRLPNSPGVYRMFNAEGDVLYVGKARSLKKRVGNYAVGRVHSNRIAQMVRQTANMEFVTT 120

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EALLLEAN+IKRL+PRFN+LLRDDKSFPYILIT  H+ PA++KHR +   +G YFG
Sbjct: 121 RTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITGDHRAPAIFKHRGARARKGDYFG 180

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCS 168
           PFAS  AV +TINSLQR F +R+C DSVF  RTRPCLL+QIKRCS
Sbjct: 181 PFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCS 225


>gi|299821361|ref|ZP_07053249.1| excision endonuclease subunit UvrC [Listeria grayi DSM 20601]
 gi|299817026|gb|EFI84262.1| excision endonuclease subunit UvrC [Listeria grayi DSM 20601]
          Length = 402

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/368 (26%), Positives = 166/368 (45%), Gaps = 18/368 (4%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D  G +LY+GK+  L+KR++SY +      +   ++  IN++ + VT +
Sbjct: 50  LPEAPGCYIYKDENGEILYIGKSKCLKKRVRSYFNKT-QIGKTARLVRLINDLEYIVTDS 108

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE ++I   KP FNI L+D  S+PYI IT+  K P +    +    +  YFGP+
Sbjct: 109 EKEALLLEMSLIHTYKPPFNIQLKDGTSYPYIKITN-EKNPIIEIVMEIKQDKAKYFGPY 167

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  +  +T+  LQR + L  C   +     RPCL +Q+  C GPC  E++ E Y + + 
Sbjct: 168 PNRYSARQTMELLQRLYPLCRCEGKL----GRPCLYYQMGLCIGPCDHEVTPEMYQKQIT 223

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM--- 242
           +  +FL G    +K+++   M +      +E A   RD + A+         I+      
Sbjct: 224 KITQFLEGKASKVKQQLKVEMKRQIEALHFERAAELRDIILAIEETVEKQHIIFGDFSSR 283

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D                F   G   G     L  D + +  + +  F +Q   +   P+ 
Sbjct: 284 DIVGYSERNGYRSFHVFFVRNGAINGRKWGILSPDQQQSMEEAIIAFYQQ--PNNMLPKE 341

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISH 362
           +L+  + +++ L       +    + I VPK+G+K + +  A  N+  +           
Sbjct: 342 LLIPADLDQSYL-------KTALGIPIIVPKRGKKLEQVHLANENSSSALHAHAHLLEKF 394

Query: 363 QMILKDFT 370
              L++  
Sbjct: 395 PNGLREAK 402


>gi|112945797|gb|ABI26404.1| UvrC [Lactobacillus reuteri]
          Length = 314

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 145/308 (47%), Gaps = 9/308 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M +I  +++YVGKA NL+ R++SY   ++HT ++  M+S++ +    VT T
Sbjct: 13  LPDKPGCYLMKNINDQIIYVGKAKNLKNRVRSYF-KSSHTGKVAKMVSEVADFETIVTST 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             E+ LLE  +I++ +P FNI L+    +PYI IT+  + P +          G YFGP+
Sbjct: 72  NKESFLLEITLIQKHQPYFNIKLKKGTGYPYIKITN-ERDPQIKIVSKIKKDGGYYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A E+T++ +Q+ + LR C         RPCL + + +C G C  ++   +Y E + 
Sbjct: 131 PNVYAAEETMHFIQKVYPLRRCNGYQ----GRPCLYYHMGQCLGACFKDVPKSEYEEQIK 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RM 242
           + K FLSG    +K ++ + M  A    ++E A   RD+L  +         I N     
Sbjct: 187 KIKSFLSGNTATVKRQLTKKMQLAAENMEFERAAEIRDQLHYIEVTVEKQKIISNDKTPR 246

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D F+ Y +K    IQ  F    +              +               +   P  
Sbjct: 247 DLFNFYMDKGWLSIQIFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPRE 306

Query: 303 ILLSEEAE 310
           ILL++   
Sbjct: 307 ILLAKGLP 314


>gi|297171377|gb|ADI22381.1| nuclease subunit of the excinuclease complex [uncultured nuHF2
           cluster bacterium HF0500_02A10]
          Length = 418

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 127/439 (28%), Positives = 203/439 (46%), Gaps = 36/439 (8%)

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--- 239
            ++E  K L G    +++++ + M+ A+   ++E A   RD +  L  + +         
Sbjct: 1   MINEILKVLGGETEYVRDRVQKQMSDASRDLEFERAAHFRDIITVLDGMAHQQLVEDLRG 60

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           N  D   +  + ++          G   G  T      SE  +  +L     ++Y     
Sbjct: 61  NDYDLIGIARDGDIGVGVVMKIRRGVLLGRDTIRFSEISECNDGSLLDMLTSRYYLGGSK 120

Query: 297 ---KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHT 353
                 P+ IL+  + E   +L+   F + GYKV I +PK+G KR++ E A  NA  +  
Sbjct: 121 QPHSDFPKEILVPVDFENKDILKEVLFYKDGYKVDIRIPKRGIKRRLCELATDNARHALE 180

Query: 354 QKLSTEISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
            +L+T           L D + K      P+ I  +D SHI G   VG  VV       K
Sbjct: 181 DRLTTTRQFHDRADEVLYDLSDKLXXXXXPRFIACFDVSHIQGSETVGSAVVFENAEPKK 240

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVIL 469
           ++YR+  +  +     DD   M  V+ R FS  ++N                  PD+V++
Sbjct: 241 SEYRRMRIRGDW--GNDDYRSMAEVVSRYFSYRLENG--------------LPLPDLVLI 284

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           DGGKGQL +A   L +L V + + +IS+AK  +       F +   E L    RD  L+ 
Sbjct: 285 DGGKGQLRSAHDSLNELGVTD-MPMISLAKREEL-----VFRLGTREPLRFKRRDNALHV 338

Query: 530 IQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           +QR+RDEAHRFA+T +RK RR +   S L EI GIGP +++LLL  FG+V+ I  ++ E 
Sbjct: 339 LQRIRDEAHRFAVTYNRKLRRNRTVSSDLSEIPGIGPEKQKLLLLRFGSVRAIKSANVEE 398

Query: 589 LASIEGISKKIACKIYNHF 607
           +A I G+   +A +I  + 
Sbjct: 399 IAEISGLGLVLADRIITYL 417


>gi|330752515|emb|CBL87463.1| excinuclease ABC, C subunit [uncultured Sphingobacteria bacterium]
          Length = 348

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 152/313 (48%), Gaps = 9/313 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D   ++LYVGKA  L+KR++SY      + R+  ++ +I +I FT   +
Sbjct: 16  IPNKPGVYEFYDANQKILYVGKAKKLKKRVQSYFQKEQTSARLKLLVKKITSIEFTTVES 75

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           + EA LLE N+IK  +P++NI L+DDKS+PYI+I +   IP LY  R        YFGP+
Sbjct: 76  DQEAFLLENNLIKEHQPKYNIQLKDDKSYPYIVIRN-EPIPRLYFTRRKVQDGSEYFGPY 134

Query: 126 ASVDAVEKTINSLQRTFFLRSCA-----DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
             V  V   +N  +    LR+C      D + + + + CL + I  C  PCTGE S+ +Y
Sbjct: 135 TGVKHVRAIVNLAKELHPLRTCKLDLSPDKISQGKYKVCLEYHIGNCLAPCTGEQSASEY 194

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI-- 238
            E +   +K L G   N+ + +    NQAT + ++E A  ++ ++  +   +  +     
Sbjct: 195 NEGIDTIRKILEGKTSNIIDALIERRNQATQELNFEQAHYYQKKIEKIQEFRMPSLVENL 254

Query: 239 -YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
              + D + + H ++ + I            +    +       + ++L   +R+F   +
Sbjct: 255 GIEQADVYQILHKEHGSAIHHIKIREYSIIFSTINQVIPKLHEDDEELLLQAIRKFTMAQ 314

Query: 298 PCPENILLSEEAE 310
           P      +    +
Sbjct: 315 PLEAIPPIIAPID 327


>gi|283770207|ref|ZP_06343099.1| UvrABC system protein C [Staphylococcus aureus subsp. aureus H19]
 gi|283460354|gb|EFC07444.1| UvrABC system protein C [Staphylococcus aureus subsp. aureus H19]
          Length = 400

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 109/428 (25%), Positives = 184/428 (42%), Gaps = 37/428 (8%)

Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR---MDCFSL 247
           ++G +  + + +   M  A+   D+E A  +RD +  + ++ N    + +     D F  
Sbjct: 1   MNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGY 60

Query: 248 YHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSE 307
             +K   CIQ  F   G      T  +                         P+ + +  
Sbjct: 61  SVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKEVHVPR 120

Query: 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL----STEISHQ 363
             ++  +  +   K       I  P +G K+++++ A  NA  S   K       E    
Sbjct: 121 NLDKEMIQSVVDTK-------IVHPARGPKKEMVDLAAHNAKVSLNNKFELISRDESRTI 173

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             +++   +  +   P RIE +DNS+I G   V  MV   +    K  YRK+ +    VK
Sbjct: 174 KAIEELGTQMGI-QTPIRIEAFDNSNIQGVDPVSAMVTFIDGKPDKKNYRKYKIKT--VK 230

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV- 482
             DD   MR V+ RR+S+++                    PD++I+DGGKG ++    V 
Sbjct: 231 GPDDYKSMREVVRRRYSRVLNEG--------------LPLPDLIIVDGGKGHMNGVIDVL 276

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
             +L ++  I +  + K  K     E  +    E + L       Y + R++DE HRFAI
Sbjct: 277 QNELGLD--IPVAGLQKNDKHQTS-ELLYGASAEIVPLKKNSQAFYLLHRIQDEVHRFAI 333

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR+ R+K    S LD+I+GIG  RK LLL+SFG++K +  ++ E   +I GI + +A 
Sbjct: 334 TFHRQTRQKTGLKSILDDIDGIGSKRKTLLLRSFGSIKKMKEATLEDFKNI-GIPENVAK 392

Query: 602 KIYNHFHK 609
            ++   HK
Sbjct: 393 NLHEQLHK 400


>gi|237800462|ref|ZP_04588923.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023321|gb|EGI03378.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 218

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 96/235 (40%), Positives = 133/235 (56%), Gaps = 19/235 (8%)

Query: 378 IPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLER 437
            P R+E YD SH  G + V   VV G  G +K+ YR+FN+    V   DD A M   L R
Sbjct: 1   PPMRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VTAGDDYAAMHQALTR 58

Query: 438 RFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI 497
           R+S++   E  L              PDV+++DGGKGQ+S A+ VL +L V + I ++ +
Sbjct: 59  RYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVLNELQVPDLI-LLGV 103

Query: 498 AKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-S 555
           AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAIT HR RR K    S
Sbjct: 104 AKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAITGHRARRGKTRRTS 163

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A  IY + H  
Sbjct: 164 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 218


>gi|269967057|ref|ZP_06181125.1| UvrABC system protein C [Vibrio alginolyticus 40B]
 gi|269828316|gb|EEZ82582.1| UvrABC system protein C [Vibrio alginolyticus 40B]
          Length = 211

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 112/171 (65%), Gaps = 1/171 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY      + +   ++S I  I  TV
Sbjct: 11  LKTVTHQPGVYRMYNAEAVVIYVGKAKDLKKRLSSYFRKKVDSEKTRALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI I+  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYFPKYNVLLRDDKSYPYIFIS-GHKHPRLSIHRGAKKRKGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
           GP+    AV +T++ LQ+ F +R C D+V+ +RTRPCL++QI RC+GPC  
Sbjct: 130 GPYPDSGAVRETLHLLQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVN 180


>gi|153217668|ref|ZP_01951349.1| excinuclease ABC, subunit C [Vibrio cholerae 1587]
 gi|124113385|gb|EAY32205.1| excinuclease ABC, subunit C [Vibrio cholerae 1587]
          Length = 298

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 99/316 (31%), Positives = 156/316 (49%), Gaps = 22/316 (6%)

Query: 298 PCPENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
             P  I+L+    EET  L+ +  +  G KV   V   G + + ++ A  NA  + T K+
Sbjct: 1   SIPARIILNRGLTEETEALQTAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKI 60

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
           + +++     K   ++  +  I  R+E +D SH MG S +   VV  + G +K +YR++N
Sbjct: 61  NHKMTINQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYN 119

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +    +   DD A M  VLERR+S+ +                    PD++ +DGGKGQL
Sbjct: 120 I--TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQL 162

Query: 477 SAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           + A  ++     +      II IAKG  R  G+E      G+   L    P L+ IQ +R
Sbjct: 163 NRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIR 222

Query: 535 DEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           DE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + 
Sbjct: 223 DESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVP 282

Query: 594 GISKKIACKIYNHFHK 609
           GIS  +A  IY    +
Sbjct: 283 GISHALAENIYQALKQ 298


>gi|121591833|ref|ZP_01679013.1| UvrABC system protein C [Vibrio cholerae 2740-80]
 gi|121546301|gb|EAX56586.1| UvrABC system protein C [Vibrio cholerae 2740-80]
          Length = 213

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 88/204 (43%), Positives = 129/204 (63%), Gaps = 2/204 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TV
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYM 181
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189

Query: 182 EFVHEAKKFLSGGNHNLKEKIARN 205
           E VH  + FL G ++ +   + R 
Sbjct: 190 EIVHYLRLFLQGKDNQVLSILVRK 213


>gi|16802887|ref|NP_464372.1| hypothetical protein lmo0846 [Listeria monocytogenes EGD-e]
 gi|47094852|ref|ZP_00232466.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224503185|ref|ZP_03671492.1| hypothetical protein LmonFR_11803 [Listeria monocytogenes FSL
           R2-561]
 gi|254832189|ref|ZP_05236844.1| hypothetical protein Lmon1_12614 [Listeria monocytogenes 10403S]
 gi|254898982|ref|ZP_05258906.1| hypothetical protein LmonJ_04175 [Listeria monocytogenes J0161]
 gi|254911530|ref|ZP_05261542.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes J2818]
 gi|254935856|ref|ZP_05267553.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes F6900]
 gi|284801175|ref|YP_003413040.1| hypothetical protein LM5578_0925 [Listeria monocytogenes 08-5578]
 gi|284994317|ref|YP_003416085.1| hypothetical protein LM5923_0879 [Listeria monocytogenes 08-5923]
 gi|16410234|emb|CAC98924.1| lmo0846 [Listeria monocytogenes EGD-e]
 gi|47016734|gb|EAL07653.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258608444|gb|EEW21052.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes F6900]
 gi|284056737|gb|ADB67678.1| hypothetical protein LM5578_0925 [Listeria monocytogenes 08-5578]
 gi|284059784|gb|ADB70723.1| hypothetical protein LM5923_0879 [Listeria monocytogenes 08-5923]
 gi|293589476|gb|EFF97810.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes J2818]
          Length = 366

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K+K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E T  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQV--EKTLQEELATFLNQFYEDPNNIQP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ +++ L E         +     P++G K+K ++ A+ NA  ++      + 
Sbjct: 304 KELLIAEKIDKSLLNE-------PLRKACLFPQKGSKKKQVDLAIENAKSAYIAYAKMKE 356


>gi|315302789|ref|ZP_07873556.1| excinuclease ABC subunit C [Listeria ivanovii FSL F6-596]
 gi|313628846|gb|EFR97212.1| excinuclease ABC subunit C [Listeria ivanovii FSL F6-596]
          Length = 210

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 114/204 (55%), Gaps = 6/204 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            VEALLLE N+IK+  PRFNI L+DDK++P+I IT+  + P L   R     +G YFGP+
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIKITN-ERHPRLIITRQVKKDKGKYFGPY 130

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +V A  +    L R + LR C+    +     CL + + +C  PC  ++ + KY E   
Sbjct: 131 PNVYAANEVKRILDRLYPLRKCSTLPNQ----VCLYYHLGQCLAPCVFDVEASKYKEMQD 186

Query: 186 EAKKFLSGGNHNLKEKIARNMNQA 209
           E   FL+GG   +K  + + M  A
Sbjct: 187 EIVAFLNGGYKTVKNDLMKKMQLA 210


>gi|254827789|ref|ZP_05232476.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes FSL N3-165]
 gi|258600170|gb|EEW13495.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes FSL N3-165]
          Length = 366

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 175/360 (48%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C   +     RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDGKL----GRPCLYYHLGLCLGPCQAEIEPAVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K+K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E T  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQV--EKTLQEELATFLNQFYEDPNNIQP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ +++ L E         +     P++G K+K ++ A+ NA  ++      + 
Sbjct: 304 KELLIAEKIDKSLLNE-------PLRKACLFPQKGSKKKQVDLAIENAKSAYIAYAKMKE 356


>gi|313609880|gb|EFR85295.1| UvrABC system protein C [Listeria monocytogenes FSL F2-208]
          Length = 366

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 105/360 (29%), Positives = 172/360 (47%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKAKLQEDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E +  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIQP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L+SE+ ++  L E         +     P++G K+K IE A+ NA  ++      + 
Sbjct: 304 KELLISEKLDKKLLNE-------PLRKACLFPQKGGKKKQIELAIENAKSAYIAYAKMKE 356


>gi|257892935|ref|ZP_05672588.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,408]
 gi|257829314|gb|EEV55921.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,408]
          Length = 336

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 101/356 (28%), Positives = 169/356 (47%), Gaps = 32/356 (8%)

Query: 260 FFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISF 319
           F   G+            +E+    +          +   P+ +L+ +  ++ S+  +  
Sbjct: 8   FVRQGKLIERDVSMFPFYNEAEEDFLTYIGQFYQENEHFIPKEVLIPDTIDKPSVEALLD 67

Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINA----HRSHTQKLSTEISHQMILKDFTKKFAL 375
            K       +  PK+GEK+K++E A  NA    +         +      ++       +
Sbjct: 68  TK-------VLQPKRGEKKKLVELANKNASVALNERFDLIARKQERTIGAVERLGNAMNI 120

Query: 376 PHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL 435
           P    RIE +DNS+IMG + V  MVV  +    + +YRK+ +    V   DD A MR V+
Sbjct: 121 PTP-IRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIKT--VNGPDDYASMREVI 177

Query: 436 ERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITII 495
            RR+S++I+                   PD++++DGGKGQ+  A+ VL +  +   I I 
Sbjct: 178 YRRYSRVIREG--------------LPLPDLILIDGGKGQVDVAKDVL-ENQLGIDIPIA 222

Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY- 554
            +AK  K     E  F      + L    P  + +QR++DE HRFAIT HR+ R K ++ 
Sbjct: 223 GMAKNDKHKT-NELLFGTDLAVVPLERNSPEFFLLQRVQDEVHRFAITFHRQLRSKNSFA 281

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           S LDEI G+GP RK++LL+ F ++K I+ ++ E L  I G+ K +A  +++  H+ 
Sbjct: 282 SRLDEIEGLGPKRKKMLLKEFKSLKNITAATIEELQEI-GLPKNVAQNVFDKLHQE 336


>gi|46907077|ref|YP_013466.1| excinuclease ABC subunit C [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|46880344|gb|AAT03643.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes
           serotype 4b str. F2365]
          Length = 366

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 102/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K+K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E +  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIRP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ +++ L E         +     P++G K+K ++ A+ NA  ++      + 
Sbjct: 304 KELLIAEKIDKSLLNEQL-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356


>gi|254852337|ref|ZP_05241685.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes FSL R2-503]
 gi|254993069|ref|ZP_05275259.1| excinuclease ABC, chain C (UvrC) [Listeria monocytogenes FSL
           J2-064]
 gi|300765790|ref|ZP_07075765.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes
           FSL N1-017]
 gi|258605644|gb|EEW18252.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes FSL R2-503]
 gi|300513484|gb|EFK40556.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes
           FSL N1-017]
          Length = 366

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 102/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPVVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K+K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E +  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIRP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ +++ L E         +     P++G K+K ++ A+ NA  ++      + 
Sbjct: 304 KELLIAEKIDKSLLNEQL-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356


>gi|217965061|ref|YP_002350739.1| UvrABC system protein C (Protein UvrC) (Excinuclease ABC subunit C)
           [Listeria monocytogenes HCC23]
 gi|217334331|gb|ACK40125.1| UvrABC system protein C (Protein UvrC) (Excinuclease ABC subunit C)
           [Listeria monocytogenes HCC23]
 gi|307570379|emb|CAR83558.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes
           L99]
          Length = 366

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 104/360 (28%), Positives = 172/360 (47%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKAKLQEDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E +  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIQP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ ++  L E         +     P++G K+K IE A+ NA  ++      + 
Sbjct: 304 KELLIAEKLDKKLLNE-------PLRKACLFPQKGGKKKQIELAIENAKSAYIAYAKMKE 356


>gi|224500427|ref|ZP_03668776.1| hypothetical protein LmonF1_12474 [Listeria monocytogenes Finland
           1988]
          Length = 366

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 173/360 (48%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI  +   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRELELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K+K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E T  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQV--EKTLQEELATFLNQFYEDPNNIQP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ +++ L E         +     P++G K+K ++ A+ NA  ++      + 
Sbjct: 304 KELLIAEKIDKSLLNE-------PLRKACLFPQKGSKKKQVDLAIENAKSAYIAYAKMKE 356


>gi|290892962|ref|ZP_06555952.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes FSL J2-071]
 gi|290557538|gb|EFD91062.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes FSL J2-071]
          Length = 366

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 104/360 (28%), Positives = 172/360 (47%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEIVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKAKLQEDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E +  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIQP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ ++  L E         +     P++G K+K IE A+ NA  ++      + 
Sbjct: 304 KELLIAEKLDKKLLNE-------PLRKACLFPQKGGKKKQIELAIENAKSAYIAYAKMKE 356


>gi|153820511|ref|ZP_01973178.1| UvrABC system protein C [Vibrio cholerae NCTC 8457]
 gi|126508944|gb|EAZ71538.1| UvrABC system protein C [Vibrio cholerae NCTC 8457]
          Length = 181

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 1/170 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M +    V+YVGKA +L+KR+ SY   N  + +   ++S I  I  TV
Sbjct: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYF 129

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT 172
           GP+    AV +T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC 
Sbjct: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCV 179


>gi|255017864|ref|ZP_05289990.1| hypothetical protein LmonF_09265 [Listeria monocytogenes FSL
           F2-515]
          Length = 326

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/316 (30%), Positives = 157/316 (49%), Gaps = 13/316 (4%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K+K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E T  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQV--EKTLQEELATFLNQFYEDPNNIQP 303

Query: 301 ENILLSEEAEETSLLE 316
           + +L++E+ +++ L E
Sbjct: 304 KELLIAEKIDKSLLNE 319


>gi|254823886|ref|ZP_05228887.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes FSL J1-194]
 gi|293593111|gb|EFG00872.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes FSL J1-194]
          Length = 366

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 101/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   +    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRNENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K+K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E +  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYEDPNNIRP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ +++ L E         +     P++G K+K ++ A+ NA  ++      + 
Sbjct: 304 KELLIAEKIDKSLLNEQL-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356


>gi|116872259|ref|YP_849040.1| excinuclease ABC, subunit C [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741137|emb|CAK20257.1| excinuclease ABC, subunit C [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 366

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 106/360 (29%), Positives = 172/360 (47%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYKDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    ++      YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEAKQDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +Q+ F L  C         RPCL + +  C GPC  EI    Y   +H
Sbjct: 130 PGRYSARQTVDLIQKLFPLCRCDG----KPGRPCLYYHLGLCLGPCLREIDPAVYKAQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G    +K+KI   M +AT K ++E A   RD+L A++        I+      
Sbjct: 186 KISRFLEGDVKPVKKKIQAIMQEATDKLEFERAAEQRDKLHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G      +   E +  + L++F+ QFY D     P
Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGRKWHVFQV--EKSLQEDLAHFINQFYEDPNNIQP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ ++ SL E         +     P++G K+K I  A  NA  ++      + 
Sbjct: 304 KELLIAEKLDKLSLAE-------PLRKACVFPQKGGKKKQINLANENAKSTYIAYAKMKE 356


>gi|46204773|ref|ZP_00049515.2| COG0322: Nuclease subunit of the excinuclease complex
           [Magnetospirillum magnetotacticum MS-1]
          Length = 234

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 104/235 (44%), Positives = 133/235 (56%), Gaps = 23/235 (9%)

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPK---- 454
           M+V G  GF+K  YR FN+   ++   DD  MMR VL RRF +L K         +    
Sbjct: 1   MIVAGPTGFMKTHYRTFNIKSEELTPGDDFGMMREVLTRRFKRLAKEAPRTPKEAEVGEP 60

Query: 455 -----------------KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISI 497
                                +FP+WPD+V++DGG GQL AA+  L ++ V + + ++ I
Sbjct: 61  QAAAEGQAVPPATEALPDDPDAFPAWPDLVLIDGGAGQLEAARASLAEIGVID-VPLVGI 119

Query: 498 AKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSP 556
           AKG  R AG E FFV       L  RDP+LYF+QRLRDEAHRFAI THR RRK+    +P
Sbjct: 120 AKGRDRDAGRETFFVPGRTPFKLPPRDPVLYFVQRLRDEAHRFAIGTHRARRKREMTRNP 179

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           LDEI GIGP RKR LL  FGTVK I R++ E LA   G++   A  +Y+ FH N 
Sbjct: 180 LDEIAGIGPTRKRALLHHFGTVKAIQRAALEDLAKAPGVNAATARAVYDFFHANA 234


>gi|332311252|gb|EGJ24347.1| Excinuclease ABC, subunit C [Listeria monocytogenes str. Scott A]
          Length = 366

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K+K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E +  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYKDPNNIRP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ +++ L E         +     P++G K+K ++ A+ NA  ++      + 
Sbjct: 304 KELLIAEKIDKSLLNEQI-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356


>gi|47092053|ref|ZP_00229846.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes
           str. 4b H7858]
 gi|47019493|gb|EAL10233.1| excinuclease ABC subunit C domain protein [Listeria monocytogenes
           str. 4b H7858]
          Length = 366

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPVVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K+K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E +  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYKDPNNIRP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ +++ L E         +     P++G K+K ++ A+ NA  ++      + 
Sbjct: 304 KELLIAEKIDKSLLNEQL-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356


>gi|226223464|ref|YP_002757571.1| excinuclease ABC, chain C (UvrC) [Listeria monocytogenes Clip81459]
 gi|254931227|ref|ZP_05264586.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes HPB2262]
 gi|225875926|emb|CAS04630.1| Putative excinuclease ABC, chain C (UvrC) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293582775|gb|EFF94807.1| excinuclease ABC subunit C domain-containing protein [Listeria
           monocytogenes HPB2262]
          Length = 366

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/360 (28%), Positives = 174/360 (48%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T++ +++ F L  C         RPCL + +  C GPC  EI    Y + +H
Sbjct: 130 PGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIDPAVYKKQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   N+K+K+  +M  AT   ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+     +   E +  + L+ FL QFY D     P
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVFQI--EKSLQEDLAKFLNQFYKDPNNIRP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ +++ L E         +     P++G K+K ++ A+ NA  ++      + 
Sbjct: 304 KELLIAEKIDKSLLNEQL-------RKACLFPQKGGKKKQVDLAIENAKSAYIAYAKMKE 356


>gi|226324327|ref|ZP_03799845.1| hypothetical protein COPCOM_02108 [Coprococcus comes ATCC 27758]
 gi|225206775|gb|EEG89129.1| hypothetical protein COPCOM_02108 [Coprococcus comes ATCC 27758]
          Length = 223

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 3/207 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRF 60
             +++P  PGVY M      ++YVGKA +L+ R++ Y   + +   +I  M++ I    +
Sbjct: 11  ELKKLPGKPGVYLMHGEKDEIIYVGKAISLKNRVRQYFQPSRNRGAKIDQMVTHITRFEY 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            VT +E+EAL+LE N+IK  +P++N +L DDKS+P+I +T     P +   R     +  
Sbjct: 71  IVTDSELEALVLECNLIKEHRPKYNTMLMDDKSYPFIKVTTGEAYPRIMMARQMKKDKSK 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           YFGP+ SV AV+ TI  +++ + LRSC   + R   + R CL   IK+C  PC G IS E
Sbjct: 131 YFGPYTSVTAVKDTIELIRKLYRLRSCNRILPRDIGKERCCLYHHIKQCDAPCQGYISQE 190

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARN 205
           KY E V E  KFL G    + + + + 
Sbjct: 191 KYRESVDEVLKFLGGNYDKILKDLEKK 217


>gi|332978175|gb|EGK14909.1| excinuclease ABC subunit C [Desmospora sp. 8437]
          Length = 240

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 6/232 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y M ++   ++Y+GKA +L+ R++SY   + H  +   ++S+I +  + VT +
Sbjct: 12  LPEKPGCYLMKNLRDEIIYIGKAKSLKNRVRSYFTGS-HDGKTQLLVSEIEDFEYIVTES 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
             EAL+LEA +IKR +P +N+L++DDKS+PYI +T +   P L   R        YFGP+
Sbjct: 71  ATEALILEAVLIKRHRPHYNVLMKDDKSYPYIRLT-RETHPRLEVTRKVKKDGSRYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +  A ++T   L + + LR C         R CL + + +C  PC  ++   +Y E V 
Sbjct: 130 PNAQAAQQTKKLLDKLYPLRKCRTLP----KRVCLYYHLGQCLAPCEFDVDPSQYEEMVR 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E  +FL+GG   ++  + R M+ A  + ++E A   RD +  +  +    + 
Sbjct: 186 EISRFLNGGFQEVQRDLERKMHLAAEELNFERARELRDLIQHIEAVMVKQNI 237


>gi|313624520|gb|EFR94517.1| UvrABC system protein C [Listeria innocua FSL J1-023]
          Length = 366

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/360 (27%), Positives = 172/360 (47%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKQDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T+  +++ + L  C         RPCL + +  C GPC  EI    Y + + 
Sbjct: 130 PGRFSARQTVELIEKLYPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIQ 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G    +K ++ ++M  AT K ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKGVKGRLTKDMEAATEKLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   G+         E++  + L+ F+ QFY D     P
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVF--PIENSLQEDLADFINQFYEDPNNIQP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ ++ +L E         +   + P++G K+K +  A+ NA  ++      + 
Sbjct: 304 KELLIAEKIDKIALKE-------PLRKASSFPQKGGKKKQLNLAIENAKSTYAAYAKMKE 356


>gi|313634163|gb|EFS00820.1| UvrABC system protein C [Listeria seeligeri FSL N1-067]
 gi|313638786|gb|EFS03870.1| UvrABC system protein C [Listeria seeligeri FSL S4-171]
          Length = 366

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/360 (27%), Positives = 166/360 (46%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y   D    +LY+GK+  L+ R+KSY        +   ++ QI ++   +T +
Sbjct: 12  LPDAPGCYIYKDENNEILYIGKSKCLKNRVKSYFTGK-QIGKTARLVRQIRDLELIITSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++ +S+PYI IT+  K P +    ++      YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGQSYPYIKITN-EKNPHIEVVFEAKQDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T+  +++ F L  C         RPCL + +  C GPC  EI    Y   + 
Sbjct: 130 PGRYSARQTVELIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYQAQIQ 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   ++K K+  +M  AT K  +E A   RD + A++        I+      
Sbjct: 186 KITRFLEGNVKDVKTKLTLDMQAATEKLQFERAAELRDTIQAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   GT     +     +  + L+ F+ QFY D     P
Sbjct: 246 DIIGCYEQDNYLSVFVFFVRNGAINGTKWHVFEIQK--SLQEDLADFINQFYQDPNNIQP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L+SE+  + SL           +  I+ P++G K+  I  A+ NA  ++      + 
Sbjct: 304 KELLISEKLAKMSL-------SVPLQKAISFPQKGGKKHQINLAVENAKSTYIAYAKMKE 356


>gi|329770493|ref|ZP_08261871.1| hypothetical protein HMPREF0433_01635 [Gemella sanguinis M325]
 gi|328836242|gb|EGF85911.1| hypothetical protein HMPREF0433_01635 [Gemella sanguinis M325]
          Length = 331

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 101/331 (30%), Positives = 158/331 (47%), Gaps = 13/331 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PG Y   D  G ++YVGKA NL+ R+KSY     H  +   ++S+I ++ + 
Sbjct: 8   KLEFLPDSPGCYIYRDNIGEIIYVGKAKNLKNRVKSYFTGT-HNKKTQVLVSKIEDLEYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGS 120
           +  +E EAL+LE N+IK+ +P FNI L+DDKS+PY++IT +   P L   R      +  
Sbjct: 67  IVNSEKEALILENNLIKKYRPYFNIRLKDDKSYPYLMITKEEN-PRLLMTRKYKKSNKNI 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+  + +  +    L + + LR C         RPC+ +QI  C GPC  ++  E+Y
Sbjct: 126 YFGPYVDIKSANEVKKILDKVYPLRRCNPIE----KRPCMYYQIGECIGPCARKVPQEEY 181

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN---DS 237
            E +++ K FLSG    + E + + M +     ++E+A      + ++          DS
Sbjct: 182 RERINKIKSFLSGDTSEILEDLNKKMKEHIQNLEFEAAQQIHSFIKSIEISIQKQVITDS 241

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                D     +NK   CIQ      G        +   +   T  QIL  +L Q+YT  
Sbjct: 242 KNIDRDYIGFSYNKEYICIQIFLSRMGNIIERKVEYF--NLYDTPEQILYSYLIQYYTLN 299

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVK 328
             P+ I +    +   L EI FFK    K  
Sbjct: 300 KLPKEIYVDG-LDIDLLNEIFFFKSNFSKAW 329


>gi|16799913|ref|NP_470181.1| hypothetical protein lin0839 [Listeria innocua Clip11262]
 gi|16413290|emb|CAC96071.1| lin0839 [Listeria innocua Clip11262]
          Length = 366

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/358 (27%), Positives = 165/358 (46%), Gaps = 16/358 (4%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKQDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T+  +++ + L  C         RPCL + +  C GPC  EI    Y + + 
Sbjct: 130 PGRFSARQTVELIEKLYPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIQ 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G    +K K+ ++M  AT K ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKGVKGKLTKDMEAATEKLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D    Y   N   +   F   G   G+         E++  + L+ F+ QFY D     N
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVF--PIENSLQEDLANFINQFYED----PN 299

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
            +  +E      ++    K+   K      K G+K+++   A+ NA  ++      + 
Sbjct: 300 NIQPKELLIAEKIDKITLKEPLRKASSFPQKGGKKKQL-NLAIENAKSTYAAYAKMKE 356


>gi|289434114|ref|YP_003463986.1| excinuclease ABC subunit C domain protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170358|emb|CBH26898.1| excinuclease ABC subunit C domain protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 366

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 100/360 (27%), Positives = 167/360 (46%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y   D    +LY+GK+  L+ R+KSY        +   ++ QI ++   +T +
Sbjct: 12  LPDAPGCYIYKDENNEILYIGKSKCLKNRVKSYFTGK-QIGKTARLVRQIRDLELIITSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++ +S+PYI IT+  K P +    ++      YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGQSYPYIKITN-EKNPHIEVVFEAKQDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T+  +++ F L  C         RPCL + +  C GPC  EI    Y   +H
Sbjct: 130 PGRYSARQTVELIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYQAQIH 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G   ++K K+  +M  AT K  +E A   RD + A++        I+      
Sbjct: 186 KITRFLEGNVKDVKTKLTLDMQAATEKLQFERAAELRDTIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   GT     +     +  + L+ F+ QFY D     P
Sbjct: 246 DIIGCYEQDNYLGVFVFFVRNGAINGTKWHVFEIQK--SLQEDLADFINQFYQDPNNIQP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L+SE+  + SL           +  I+ P++G K+  I  A+ NA  ++      + 
Sbjct: 304 KELLISEKLAKMSL-------SVPLQKAISFPQKGGKKHQINLAVENAKSTYIAYAKMKE 356


>gi|313619848|gb|EFR91430.1| UvrABC system protein C [Listeria innocua FSL S4-378]
          Length = 366

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 97/358 (27%), Positives = 166/358 (46%), Gaps = 16/358 (4%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKQDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T+  +++ + L  C         RPCL + +  C GPC  EI    Y + + 
Sbjct: 130 PGRFSARQTVELIEKLYPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIQ 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G    +K K+ ++M  AT K ++E A   RD++ A++        I+      
Sbjct: 186 KISRFLEGDVKGVKGKLIKDMEAATEKLEFERAAELRDKIHAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
           D    Y   N   +   F   G   G+         E++  + L++F+ QFY D     N
Sbjct: 246 DIIGCYEQDNHLSVFVFFVRNGAINGSKWHVF--PIENSLQEDLAHFINQFYED----PN 299

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
            +  +E      ++    K+   K      K G+K+++   A+ NA  ++      + 
Sbjct: 300 NIQPKELLIAEKIDKITLKEPLRKASSFPQKGGKKKQL-NLAIENAKSTYAAYAKMKE 356


>gi|312880085|ref|ZP_07739885.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260]
 gi|310783376|gb|EFQ23774.1| excinuclease ABC, C subunit [Aminomonas paucivorans DSM 12260]
          Length = 488

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 120/236 (50%), Gaps = 3/236 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
              Q+P+ PGVY M D  GRV+YVGKA +L+KR+ SY       + R+  ++  I ++  
Sbjct: 9   QVRQLPDRPGVYLMHDREGRVIYVGKAKSLRKRVSSYFRHGGFASPRLRKLVESIEDLST 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T +E EAL+LEA +IK+ +P FN+ L+  + +PY+ IT     P L   R        
Sbjct: 69  IRTGSEAEALILEARLIKQYQPFFNVELKLGERYPYLKIT-DEPFPRLVVTRYRGQDGAL 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT-RPCLLFQIKRCSGPCTGEISSEK 179
           Y GP+  V  +   +  ++R F LR+C      + + RPC+   + RC  PC G  + ++
Sbjct: 128 YLGPYVRVSELRTLLRFIERFFPLRTCKAPCDPNPSRRPCMNHALGRCLAPCAGLCTEQE 187

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           Y E V +    L G   +L E++   MNQA     +E A   RD + A+  I    
Sbjct: 188 YRERVADVALLLQGKGTDLVERLRCRMNQAARNLAFEEAARLRDTIRAIWRIGRQQ 243



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 129/303 (42%), Gaps = 18/303 (5%)

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369
           + T L+E    +       +   +    R  I        +        E      L   
Sbjct: 202 KGTDLVERLRCRMNQAARNLAFEEAARLRDTIRAIWRIGRQQPRVAAPGEDEPWQALLRV 261

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429
            +   LP +P RIE YD SH  G   VG  VV  +     + YR+F+L  ++    DD  
Sbjct: 262 QEALGLPTLPWRIEGYDISHTAGGQEVGVRVVFEQGRPNPSLYRRFHL--DESLGGDDFR 319

Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
            +R  L RRF +        N   K         P +V++DGG  QL  A+  L+   V 
Sbjct: 320 ALRETLSRRFRK--------NPGGKPALGEDDPRPQLVLIDGGPIQLEFARETLEGQGVF 371

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR 549
               ++++AK  +     E F   +   L L   D  L  +Q++RDEAHRFA+T+HR RR
Sbjct: 372 T--PLVALAKREE-----ELFLPGRANPLRLPREDLALRLLQQVRDEAHRFAVTSHRSRR 424

Query: 550 KKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            +    S L+ I GIG  +   LL  FG+ K I+R +PE LA   GI   +A +I     
Sbjct: 425 DRLLRASRLESIPGIGKGKAAQLLSRFGSTKAIARMAPEDLARTPGIGTVLAQRILTALK 484

Query: 609 KNT 611
           +  
Sbjct: 485 EEQ 487


>gi|315302220|ref|ZP_07873137.1| UvrABC system protein C [Listeria ivanovii FSL F6-596]
 gi|313629410|gb|EFR97626.1| UvrABC system protein C [Listeria ivanovii FSL F6-596]
          Length = 366

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 97/360 (26%), Positives = 165/360 (45%), Gaps = 20/360 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY        +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYKDENQEILYIGKSKCLKNRVKSYFTGK-QVGKTARLVRQIRDLELIITSS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FN  L++  S+PYI IT+  K P +    ++      YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNRQLKEGPSYPYIKITN-EKNPHIEVVVETKADGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
               +  +T   +++ + L  C         RPCL + +  C GPC  EI+   Y   + 
Sbjct: 130 PGRYSARQTAMLIEKLYPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIAPAVYQAQIQ 185

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRM 242
           +  +FL G    +K K+ ++M  AT K  +E A   RD + A++        I+      
Sbjct: 186 KITRFLEGDVKAVKTKLTQDMQVATEKLQFERAAELRDTIQAINETIEKQHIIFPGLKNR 245

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--KPCP 300
           D    Y   N   +   F   G   GT     +     +  + L+ F+ QFY D     P
Sbjct: 246 DLIGCYEQDNHLSVFVFFVRNGAINGTKWHVFEIQK--SLQEDLADFINQFYQDPNNIQP 303

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
           + +L++E+ ++ SL           +   + P++G K+K I  A+ NA  ++      + 
Sbjct: 304 KELLIAEKIDKMSLSASL-------QKVTSFPQKGGKKKQINLAVENAKSTYIAYAKMKE 356


>gi|260186359|ref|ZP_05763833.1| excinuclease ABC subunit C [Mycobacterium tuberculosis CPHL_A]
 gi|289447016|ref|ZP_06436760.1| excinuclease ABC uvrC [Mycobacterium tuberculosis CPHL_A]
 gi|289419974|gb|EFD17175.1| excinuclease ABC uvrC [Mycobacterium tuberculosis CPHL_A]
          Length = 208

 Score =  240 bits (611), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 74/196 (37%), Positives = 108/196 (55%), Gaps = 4/196 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   +++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TEVEAL LE   IK   PRFN+  RDDKS+P + +T   + P L  +R        YFG
Sbjct: 73  GTEVEALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFG 132

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR---TRPCLLFQIKRCSGPCTGEISSEKY 180
           P++   A+ +T++ L R F  R+C+  VF+      RPCLL  I +CS PC G + + ++
Sbjct: 133 PYSHAWAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVDAAQH 192

Query: 181 MEFVHEAKKFLSGGNH 196
            + V +   FLSG   
Sbjct: 193 RQIVADFCDFLSGKTD 208


>gi|294101992|ref|YP_003553850.1| excinuclease ABC, C subunit [Aminobacterium colombiense DSM 12261]
 gi|293616972|gb|ADE57126.1| excinuclease ABC, C subunit [Aminobacterium colombiense DSM 12261]
          Length = 491

 Score =  240 bits (611), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 87/244 (35%), Positives = 126/244 (51%), Gaps = 3/244 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY M D  G+V+YVGKA +L+KR+ SY       + R+  ++  I +I    T
Sbjct: 12  NLPLRPGVYIMRDEEGKVIYVGKAKSLRKRVSSYFRHEGFASPRLRKLVESIADISVIRT 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EAL++E+ +IK+ KP FNI L+ ++ +PYI IT     P L   R       +Y G
Sbjct: 72  ETEAEALIVESRLIKKYKPFFNIDLKMNERYPYIKIT-DDAFPRLVITRHKDDDGATYLG 130

Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           PF S   V   +   +R F LRSC  +     + RPCL + + RC  PC    S  +Y E
Sbjct: 131 PFISAKDVRALLRVAERYFPLRSCKAEVKPDKKKRPCLNYSLGRCLAPCAALCSETEYRE 190

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V +    L+G +  L E+I + M +A    D+E A  HRD ++A+  +     S   R 
Sbjct: 191 RVDDVILLLTGQSSELVERIRKRMEEAAHSLDFEKAARHRDAISAIWRLSRQRISSSLRE 250

Query: 243 DCFS 246
           D  S
Sbjct: 251 DIDS 254



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 144/309 (46%), Gaps = 27/309 (8%)

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS--HQMILKDF 369
           + L+E    +       +   K    R  I      + +  +  L  +I       L   
Sbjct: 204 SELVERIRKRMEEAAHSLDFEKAARHRDAISAIWRLSRQRISSSLREDIDSETWEALNKL 263

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCA 429
                +  +P RI+ +D SH+ G    G +VV  +     + YR+F +    V+  DD  
Sbjct: 264 QCLLHMDTLPWRIDGFDISHMAGHETYGVVVVFEQGVSNPSLYRRFKVRT--VEGIDDFR 321

Query: 430 MMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE 489
            +  V++RR+S++++N E L              P ++++DGG  QL  A+  L +L +E
Sbjct: 322 SIEEVVKRRYSKMLENNEPL--------------PQLILIDGGPIQLEFAKKALSELKME 367

Query: 490 NRITIISIAKGPKRSAGMEKFFVKKGEA-LVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
            +I  IS+AK        E  +  + E  + L+  DP+L  +QR+RDE+HRFAI +HR+ 
Sbjct: 368 -KIPAISLAKRE------ELIYHNEKEPPIRLDWTDPVLRLLQRVRDESHRFAIKSHRRG 420

Query: 549 RKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R      S L+EI G+G      LL SFG+VK I+  +PE L  ++GI   +A  I   F
Sbjct: 421 RGMVLTRSVLEEIPGVGKHMAASLLSSFGSVKKIAVLTPEELMQVKGIGPVLAKNIAAFF 480

Query: 608 HKNTSHTPT 616
               + + T
Sbjct: 481 RGEDNESET 489


>gi|23010825|ref|ZP_00051384.1| COG0322: Nuclease subunit of the excinuclease complex
           [Magnetospirillum magnetotacticum MS-1]
          Length = 209

 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 86/154 (55%), Positives = 112/154 (72%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY+M D  G VLYVGKA NL+ R+ SY     H++RI  MI+Q   + F  T 
Sbjct: 55  TLPTSPGVYRMFDAKGDVLYVGKAKNLKARVGSYARGQAHSNRIARMIAQTAAMEFVTTA 114

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLEAN+IK+LKPRFN+L+RDDKSFPYIL+T     P + KHR +   +G+Y+GP
Sbjct: 115 TETEALLLEANLIKQLKPRFNVLMRDDKSFPYILLTADGPAPQIVKHRGARRRKGNYYGP 174

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP 158
           FASV AV +T+N+LQR F +R+C+DS + +RTRP
Sbjct: 175 FASVWAVNRTVNALQRAFLMRTCSDSYYENRTRP 208


>gi|309800898|ref|ZP_07695030.1| putative excinuclease ABC subunit C [Bifidobacterium dentium
           JCVIHMP022]
 gi|308222434|gb|EFO78714.1| putative excinuclease ABC subunit C [Bifidobacterium dentium
           JCVIHMP022]
          Length = 353

 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 96/345 (27%), Positives = 159/345 (46%), Gaps = 37/345 (10%)

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE 359
           P  +++  E      LE       G  V I V  +G+K++++++A  NA ++  +   + 
Sbjct: 2   PREVVVPIEPARREDLERWLSGLRGSAVTIRVASRGDKKQLMDRASDNARQAMQRSKMSR 61

Query: 360 ISHQMI----LKDFTKKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQYRK 414
           IS        + D  K   L   P RIE YD S+ +G    V  MVV  +    K++YR+
Sbjct: 62  ISDMGARTTAMNDVAKALGLEQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSEYRR 121

Query: 415 FNLHPNDVKTQ-DDCAMMRMVLERRFSQ---------LIKNEE---------------NL 449
           F +   D +   DD + +   L RRF            + NE+               N+
Sbjct: 122 FAIRGADGQGALDDLSALYETLTRRFRHGNIAGDTGESMDNEQREARISRTCENTDPGNV 181

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                     F   P++V++DGG+ Q+ AA   L+   V++ + +  +AK  +     E 
Sbjct: 182 PIRQNTDRRHFAYKPNLVVVDGGRPQVMAAARALEDCGVDD-VAVCGLAKRLE-----EV 235

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRK 568
           +       ++L  +   +Y +QR+RDE+HRFAIT HR+ R+K A  S LD+I GIG   +
Sbjct: 236 WVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRRTRRKGALRSVLDDIPGIGESYQ 295

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           + LL  FG+V+ +  +S E    ++GI +  A  IY+  H     
Sbjct: 296 KRLLNHFGSVRAMREASVEDFEQVKGIGRAKAESIYHALHAQDQD 340


>gi|332978117|gb|EGK14853.1| excinuclease ABC subunit C [Desmospora sp. 8437]
          Length = 364

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/379 (27%), Positives = 173/379 (45%), Gaps = 32/379 (8%)

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D F    +K + C+Q  F   G+             E    +    ++ QFY +KP  
Sbjct: 8   DRDVFGYAADKGMMCVQIFFVRQGKLIERDVSIFPHYGEE--REDFLSYVTQFYHEKPV- 64

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
               L +E      ++      +   V + +P++G K++++E A  NA  +  ++     
Sbjct: 65  ----LPKEINLPEAVDAGLLGDWLTGVHVHIPQRGMKKRLVEMANENARIALEERFKLLE 120

Query: 361 SHQMILKDFTK---KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNL 417
             Q    +      +      P+RIE +DNS+I G   V  MVV  +    K +YRKF +
Sbjct: 121 RDQGRTVEAIHRLGEAMGIGSPRRIEAFDNSNIQGTDPVSAMVVFTDGVPDKKEYRKFKI 180

Query: 418 HPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLS 477
               V+  DD   MR V+ RR+++++K                   PD+V++DGG+GQ+S
Sbjct: 181 RS--VQGPDDYETMREVIRRRYTRVLKEN--------------LPLPDLVLVDGGRGQMS 224

Query: 478 AAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           AA  VL+ +L +   I +  + K  +        F      + L       Y +QR+++E
Sbjct: 225 AAIDVLENELGL--FIPVAGLVKNERHKTAG-LLFGDPPSEVELRRGSREFYLLQRIQEE 281

Query: 537 AHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            HRFAIT HR+ R K    S LDEI G+G  RK++L + FG+++ + + S E      GI
Sbjct: 282 VHRFAITFHRQTRGKTMTRSLLDEIPGVGKKRKQILYKHFGSLERMRQGSVEEYREA-GI 340

Query: 596 SKKIACKIYNHFHKNTSHT 614
             ++A KI +H  +  + +
Sbjct: 341 GDQLARKILDHLRRKDADS 359


>gi|257469477|ref|ZP_05633569.1| excinuclease ABC subunit C [Fusobacterium ulcerans ATCC 49185]
 gi|317063721|ref|ZP_07928206.1| excision endonuclease subunit UvrC [Fusobacterium ulcerans ATCC
           49185]
 gi|313689397|gb|EFS26232.1| excision endonuclease subunit UvrC [Fusobacterium ulcerans ATCC
           49185]
          Length = 336

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 160/318 (50%), Gaps = 11/318 (3%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +    +PE PGVY M    G+++YVGKA NL+ R+ SY +  + + +   ++  I +I F
Sbjct: 8   IKKIDIPENPGVYLMK-KNGKIIYVGKAKNLKNRVSSYFNREHESEKTKELVKNIEDIEF 66

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK---HRDSSTI 117
            +  +E++A +LE N+IK+  P++NI L+D+K++PYI I+ +   P +      R     
Sbjct: 67  IICNSEIDAFVLENNLIKKYSPKYNIALKDEKTYPYIKIS-RETFPNIKMIRTTRALDNK 125

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
            G YFGP+           ++ + F +R C   + +   RPCL + +K C GPCT +   
Sbjct: 126 TGMYFGPYPQGG--WNLKKNIVKIFKIRDCNRDMNKVYARPCLKYFMKMCPGPCTYKNIK 183

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           E+Y E V  AK+ L G   ++ E++ + M +A+    +E AI++R+++  + +  N+  +
Sbjct: 184 EEYNELVEGAKQLLKGQGRSVIEELKKKMEKASEDMKFEEAIMYREQIKEIENTVNNQIT 243

Query: 238 IYN---RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
            Y      D F++    N   I       G+  G  +  +    +     IL   +  FY
Sbjct: 244 EYGKELDEDIFNIKEENNRVFICVLNVRDGKILGKISTNIDLK-DKIYENILEVVVMAFY 302

Query: 295 TDKPCPENILLSEEAEET 312
              P P+NI+ S E E  
Sbjct: 303 NKHPIPQNIVFSSEYENE 320


>gi|325106964|ref|YP_004268032.1| excinuclease ABC C subunit domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324967232|gb|ADY58010.1| excinuclease ABC C subunit domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 496

 Score =  236 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 129/254 (50%), Gaps = 6/254 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
                P  PGVY M D   RV+YVGKA NL+ R  SY   +     R   ++ +I +I  
Sbjct: 68  KVRTFPTTPGVYLMKDAEDRVIYVGKAVNLRSRAGSYFLSAAAEERRTADLVREIADIDH 127

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TEV+ALLLEA +IK ++PRFN  L+DDK+FPY+ IT +   P +   R   T    
Sbjct: 128 ITTETEVDALLLEARLIKDIQPRFNTELKDDKTFPYLEITTREDFPRVEFTRTPQTRGTK 187

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
            +GPF S   + +TI  LQ+ F  R+C     AD       RPCLL  IK+C+ PC   I
Sbjct: 188 LYGPFTSASQLRETITVLQKIFRFRTCGLDIEADDEKWKWYRPCLLASIKQCTAPCNLRI 247

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y + + + + FL G    L  ++ + M  A  +  +E A   RD++A+L  ++   
Sbjct: 248 SKEDYKKDIQKLRMFLDGNRTRLFREMEKEMKTAAKELQFEKAANLRDQIASLKSLELRG 307

Query: 236 DSIYNRMDCFSLYH 249
           +   ++        
Sbjct: 308 EIDTHQQPEVFFID 321



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 22/191 (11%)

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             +    K   LP +P+RIE  D +H+ G   V  +V   +    K+ YR+F +    V 
Sbjct: 324 KGMTGLKKILNLPDLPRRIEGMDIAHLQGGETVASLVQFIDGLPFKHGYRRFKIRT--VD 381

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A MR V+ RR   L +  E              S+PD++++DGGKGQL+AA   +
Sbjct: 382 GVDDFASMREVVSRRMRGLQQRGE--------------SFPDLLLIDGGKGQLNAALQAM 427

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           + + V+  +T I +AK  +     E +   + E   ++     L  +Q +RDEAHRFA  
Sbjct: 428 RAIGVDPPMT-IGLAKREE-----EIYLPGESEPKRVSRDSFGLRLLQYVRDEAHRFAQH 481

Query: 544 THRKRRKKAAY 554
            H   R+K+ +
Sbjct: 482 YHHLLRRKSTF 492


>gi|153877572|ref|ZP_02004286.1| UvrABC system protein C [Beggiatoa sp. PS]
 gi|152065964|gb|EDN65714.1| UvrABC system protein C [Beggiatoa sp. PS]
          Length = 217

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 16/203 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PGVY MLD AG VLYVGKA +L+KRI  Y   +N + +   +++QI NI  TVT 
Sbjct: 15  TVPKKPGVYCMLDSAGTVLYVGKARHLKKRIAGYFTKSNQSPKNRALVAQIANIEVTVTH 74

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--------- 115
           TE EALLLE  +IK  +PR+NILLRDDKS+PYI ++  H  P L  +R  +         
Sbjct: 75  TESEALLLENTLIKTHQPRYNILLRDDKSYPYIYLS-DHPFPRLSLYRGKNPPQSSARSK 133

Query: 116 ------TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169
                 + +  YFGP+  V AV +T+N LQ+ F +R C +S FR+R+RPCL +QIKRC+ 
Sbjct: 134 KNPTGESKRARYFGPYPYVQAVHETLNLLQKLFPIRQCRESFFRNRSRPCLQYQIKRCTA 193

Query: 170 PCTGEISSEKYMEFVHEAKKFLS 192
           PC G I  + Y E V +      
Sbjct: 194 PCVGLIDEDSYHEEVQKCGIVFR 216


>gi|153872318|ref|ZP_02001248.1| UvrABC system protein C [Beggiatoa sp. PS]
 gi|152071220|gb|EDN68756.1| UvrABC system protein C [Beggiatoa sp. PS]
          Length = 277

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/253 (36%), Positives = 138/253 (54%), Gaps = 24/253 (9%)

Query: 379 PKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERR 438
           P+R+E +D SH  G + V   VV    G   ++YR+FN+   ++   DD A M+  L RR
Sbjct: 25  PQRLECFDISHTQGEATVASCVVFDTEGPRNSEYRRFNI--ENITPGDDYAAMQQALNRR 82

Query: 439 F---SQLIKNEENLNFHPKKQEYSFPS-----WPDVVILDGGKGQLSAAQGVLKKLNVEN 490
           +         E  +    ++   S P       PD++++DGG GQ++ A+ VL KL +  
Sbjct: 83  YQGNRWKGTGEREIREIGEQALDSMPQQAQNLLPDILLVDGGIGQVNVAKTVLNKLQLT- 141

Query: 491 RITIISIAKGPKRSAGMEKFFVKKGE------------ALVLNMRDPILYFIQRLRDEAH 538
            I II +AKGP R  G+E   + + E            +  L    P L+ IQ++RDEAH
Sbjct: 142 HIRIIGVAKGPGRKPGLETLILSEDETCFPASGSSSPVSFTLPKDSPALHLIQQIRDEAH 201

Query: 539 RFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RFAI  HRKRR KA + S L+EI+GIG  R++ LL  FG ++ +SR+  E LA++ GI +
Sbjct: 202 RFAIVGHRKRRAKARHTSILEEIDGIGLKRRQRLLSYFGGLQGVSRAGVEDLATVPGIER 261

Query: 598 KIACKIYNHFHKN 610
            +A KIY+ F   
Sbjct: 262 PLAQKIYDFFQAE 274


>gi|262366021|gb|ACY62578.1| excinuclease ABC subunit C [Yersinia pestis D182038]
          Length = 245

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/262 (34%), Positives = 143/262 (54%), Gaps = 23/262 (8%)

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
              +LS + +    +K+  K   L     R+E +D SH MG   V   VV   NG V+++
Sbjct: 1   MITRLSQQSTIHQRMKELAKVLKLD-EINRMECFDISHTMGEQTVASCVVFDANGPVRSE 59

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YR++N+  + +   DD A M  VL+RR+ + + +++                PDV+ +DG
Sbjct: 60  YRRYNI--SGITPGDDYAAMAQVLKRRYGKALDDQK---------------IPDVIFIDG 102

Query: 472 GKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPIL 527
           GKGQLS A  V   LNV   + +  ++ +AKG  R AG+E  F+  +GE   L    P L
Sbjct: 103 GKGQLSQAFDVFASLNVPWDKQKPLLVGVAKGSDRKAGLETLFLASEGEGFSLPPDSPAL 162

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           + IQ +RD++H  AIT HR+RR K    S L+ I G+GP R+++LL+  G ++ +  +S 
Sbjct: 163 HLIQHIRDDSHNHAITGHRQRRSKVKNTSALEMIEGVGPKRRQVLLKYMGGLQPLFNASV 222

Query: 587 ETLASIEGISKKIACKIYNHFH 608
           E +A + GIS+ +A KI+N   
Sbjct: 223 EEIAKVPGISQALAEKIHNALK 244


>gi|222837839|gb|EEE76204.1| predicted protein [Populus trichocarpa]
          Length = 267

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 89/272 (32%), Positives = 134/272 (49%), Gaps = 11/272 (4%)

Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSHIMGCSAVGCM 399
            A  NA     + L+ E S Q   +   +   L         IE +D SH  G +     
Sbjct: 1   MAQKNADIQMARLLAEEGSQQARTRALVEALDLACENLDELTIECFDISHTAGEATQASC 60

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           VV   +    ++YR+FN+    +   DD A MR VL RR+S++ + +             
Sbjct: 61  VVFHHHKMQSSEYRRFNIEG--ITGGDDYAAMRQVLTRRYSRVAEAQREAGGAELT--GK 116

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-L 518
            P  PD+V++DGGKGQ+S A+ V ++L ++    I+ + KG  R  G+E+     G   +
Sbjct: 117 QPQLPDLVLVDGGKGQVSMAREVFEQLGLDVS-RIVGVEKGEGRKVGLEELVFADGREKI 175

Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS--PLDEINGIGPLRKRLLLQSFG 576
            L      L  + ++RDEAHRFAIT  R  R K       L+EI G+GP ++  LLQ FG
Sbjct: 176 YLGYDSAALMLVAQIRDEAHRFAITGMRAARAKVRVGGGKLEEIPGVGPKKRARLLQRFG 235

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            V+ +S ++ E L S++GIS  +A  IY   H
Sbjct: 236 GVRGVSEATVEDLCSVDGISAALAEDIYRALH 267


>gi|296124345|ref|YP_003632123.1| excinuclease ABC subunit C [Planctomyces limnophilus DSM 3776]
 gi|296016685|gb|ADG69924.1| excinuclease ABC C subunit domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 465

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/247 (35%), Positives = 126/247 (51%), Gaps = 6/247 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
             +  P  PGVY M D  GRV+YVGKA NL+ R  SY         R   +I +I++I F
Sbjct: 38  KVKTFPTTPGVYLMKDARGRVIYVGKAVNLRSRAGSYFTKQAAIDRRTADLIPEIHDIDF 97

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
               +EV+ALLLE+ +IK ++PRFN  L+DDK+FPY+ IT +   P +   R   +    
Sbjct: 98  LHADSEVDALLLESRLIKDIQPRFNSDLKDDKTFPYLQITTREPFPRIEFTRRPKSRGVK 157

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH-----RTRPCLLFQIKRCSGPCTGEI 175
            FGPF S   +   I  LQ+ F  R+C+  +  +       RPCLL  + +C+ PC   I
Sbjct: 158 LFGPFTSARKLRGAIAVLQKIFRFRNCSLDIDPNEEKWRWFRPCLLASLGQCTAPCNLRI 217

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y   V     FL G    L + + R M +A+ +  +E A   RD++ AL  +Q   
Sbjct: 218 SKEDYRRDVRRLIMFLEGKKERLLKVMNREMLEASKELKFEKAARLRDQIKALMTLQERG 277

Query: 236 DSIYNRM 242
           D   +  
Sbjct: 278 DLASHAQ 284



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 22/191 (11%)

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             L    K F L  +P+RIE  D +H+ G   V  +V   +    K  Y++F +    V 
Sbjct: 294 KGLLGLKKVFGLSTLPRRIEGVDIAHLQGGETVASLVQFIDGVPFKQGYKRFKIRT--VD 351

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A MR V+ RRF +L +  EN              +PD++++DGGKGQL AA   L
Sbjct: 352 GVDDFASMREVVSRRFRRLDQEGEN--------------FPDILLIDGGKGQLGAAMEAL 397

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           K + V     +IS+AK  +     E F   + E  VL+     L  +Q +RDE+HRFA  
Sbjct: 398 KSIEV-KLPLVISLAKREE-----EIFLPGESEPKVLSRHSYALRLLQSVRDESHRFAQQ 451

Query: 544 THRKRRKKAAY 554
            H   R+K+ +
Sbjct: 452 YHHLLRRKSTF 462


>gi|289523036|ref|ZP_06439890.1| excinuclease ABC subunit C [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503579|gb|EFD24743.1| excinuclease ABC subunit C [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 504

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 78/240 (32%), Positives = 126/240 (52%), Gaps = 4/240 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60
               +P  PGVY       ++LYVGKA +L+KR+ SY   N   + R+  ++  I +I F
Sbjct: 18  KVRNLPNRPGVYIFHGEEDKILYVGKAKSLKKRVSSYFRHNGFASPRLRKLVELIRDISF 77

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE EAL++EA +IK  +P FNI L+  + +PYI IT +   P +   R  +    +
Sbjct: 78  IRTETEAEALIVEARLIKHYQPFFNIELKMGERYPYIKIT-RDPYPKVEITRHKADDGST 136

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSE 178
           Y GP+  V  + + +  ++R F LR+C+ ++     ++RPCL + + +C GPC G  +  
Sbjct: 137 YIGPYTRVKELRQVLRLMERYFPLRNCSLNLKEAPVQSRPCLRYNMGKCLGPCAGLCTQR 196

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y E V +   FL G    L E + + MN+A     +E A  +RD + A+  +     S 
Sbjct: 197 EYQELVDDVILFLRGQTSALVESLRKKMNEAVESLAFEKAAFYRDAIRAIWRLSRQQISF 256



 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 124/266 (46%), Gaps = 23/266 (8%)

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
             S   +   +      L+   +   +     RIE  D SH+ G    G  VV  +    
Sbjct: 253 QISFALRDPLDKEIWKALERLQEVLGIAFPFWRIEGCDISHLSGRETYGVFVVFEQGMPN 312

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
            + YR++ +    V+  DD   +  ++ RR+S L++                   P +++
Sbjct: 313 PSLYRRYVIKT--VEGIDDFRSIEEIVRRRYSSLLE--------------KNMPLPQLLL 356

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGG  QLS A   L +L +EN I  +++AK  +     E +       L L + DP L 
Sbjct: 357 VDGGALQLSFALKALNELGIEN-IYAVALAKEEE-----ELYLPDSRRPLKLPLDDPGLN 410

Query: 529 FIQRLRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            ++++RDEAHRFA+++H  +  K+ + S L++I G+G  R   LL +FG+V  I+  +PE
Sbjct: 411 LLRKIRDEAHRFALSSHNNKFNKRYSRSALEDIPGVGKRRAAALLAAFGSVSHIASKTPE 470

Query: 588 TLASIEGISKKIACKIYNHFHKNTSH 613
            L  ++ I  ++A  I  +   +  +
Sbjct: 471 ELEKVDNIGPRLAKHILMYLKGDNDN 496


>gi|297171123|gb|ADI22134.1| nuclease subunit of the excinuclease complex [uncultured
           myxobacterium HF0200_19H16]
          Length = 379

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 105/397 (26%), Positives = 170/397 (42%), Gaps = 30/397 (7%)

Query: 229 SHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288
              Q      +   D   +Y       I       G+  G   +        T   I  +
Sbjct: 1   MERQAVASPDFVDRDVIGIYREGPAVEIHVMRTRQGRLIGAKRYSYSDLETPTTDIISDF 60

Query: 289 FLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
             + +  +   P  IL+         L +   +    K+K+  P++G K++++  A  NA
Sbjct: 61  VSQYYSHENEAPTEILVPTPVVFGGSLGVLLGETQNKKIKLFTPQRGTKKRLLTLANKNA 120

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
            ++ T K   E   +  L+   KK  L + P+ +E YD SH  G   V   V   +    
Sbjct: 121 KQAFTDKKRQEGEAKTTLERLQKKLRLRNEPRHLECYDISHFQGTHIVASAVAFVDGIPD 180

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K+ YR F +       QDD   M  V+ RR  + ++                 + PD+++
Sbjct: 181 KSLYRHFKIRSTQ--EQDDFQSMYEVISRRTRRGLEE---------------SNLPDLMV 223

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAK--------GPKRSAGMEKFFVKKGEALVL 520
           +DGGKGQLS+A+  L    V+  + +IS+AK           + +    F     + +VL
Sbjct: 224 IDGGKGQLSSARAALDDHGVDW-VDLISLAKSRIKTRNQQDVQRSSERVFVHGIKDPIVL 282

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVK 579
                 L+ + R RDEAHRFAI   RK+R+K +  S L++I GIGP +++ LL   G+ K
Sbjct: 283 QANSSELFLLMRARDEAHRFAIEFQRKKRRKASTQSALEKIPGIGPKKRKQLLAKLGSAK 342

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
            + ++S E L S+ G   K+A  I  +F  N    PT
Sbjct: 343 RVEQASLEELQSVVG--PKLAESIRKYF-SNFPQAPT 376


>gi|295110873|emb|CBL27623.1| excinuclease ABC, C subunit [Synergistetes bacterium SGP1]
          Length = 523

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 89/299 (29%), Positives = 127/299 (42%), Gaps = 8/299 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63
            +PE PGVY M D  G V+YVGKA  L++R+ SY   SN  + R+  ++S + +I    T
Sbjct: 43  SLPERPGVYIMRDAEGTVIYVGKAIKLRRRVSSYFRHSNFASPRLRKLVSLVEDISVIRT 102

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EAL++EA +I+R  P FN+ L+ +  +PYI +T     P L   R        Y G
Sbjct: 103 ETEAEALIVEARLIRRYSPFFNVDLKMNDRYPYIRVT-DEAFPRLEITRVKRDDGAVYLG 161

Query: 124 PFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           PF S   +   +   +R F LR C  D       RPC+ + +    G C G  +  +Y E
Sbjct: 162 PFVSAGNIRSLMRLAERYFPLRVCRADLKPDPGKRPCIEYSLGHSMGACAGLCTQAEYRE 221

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V +    L G    L E++ R M+ A  + D+E A   RD + AL  I     S   + 
Sbjct: 222 RVGDVILLLEGNTRELIERLHRRMDAAARRMDFEEAAHCRDTMRALWRISRQRVSSALQE 281

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
           D  S         +          R         D   T           F   +P P 
Sbjct: 282 DLDS-----ETWHVLNQTQRAFGLRTIPWRMDAFDISHTAGHDTYGCCVVFEQGRPNPS 335



 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 136/315 (43%), Gaps = 27/315 (8%)

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTE--IS 361
           +L  E     L+E    +      ++   +    R  +      + +  +  L  +    
Sbjct: 227 ILLLEGNTRELIERLHRRMDAAARRMDFEEAAHCRDTMRALWRISRQRVSSALQEDLDSE 286

Query: 362 HQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND 421
              +L    + F L  IP R++ +D SH  G    GC VV  +     + YR+F +    
Sbjct: 287 TWHVLNQTQRAFGLRTIPWRMDAFDISHTAGHDTYGCCVVFEQGRPNPSLYRRFRIRGLA 346

Query: 422 VKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG 481
               DD A +   + RR+  ++   E                P + ++DGG  QL  A  
Sbjct: 347 EGEVDDFASIEETVRRRYRHVLDQSE--------------PMPQMALIDGGPVQLEFAMR 392

Query: 482 VLKKLNVENRITIISIAKGPKRSAGMEKFFVKK--GEALVLNMRDPILYFIQRLRDEAHR 539
            L +L +E  + ++++A+        E  F+     + + L+   P+L  +QR+RDE HR
Sbjct: 393 ALAELEME--LPLVALAERE------ELLFLPNRPDDPIRLDRSSPVLQLMQRMRDEVHR 444

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FAITTHR+ R  +   S L++I GIG  R   LL  FG+ + I+  S + LA   G+   
Sbjct: 445 FAITTHRRARNARMKRSSLEDIPGIGRARASQLLVRFGSTERIAALSTDELAGAPGVGPV 504

Query: 599 IACKIYNHFHKNTSH 613
           +A KI  H + + + 
Sbjct: 505 LARKILEHLNGSDAQ 519


>gi|218709936|ref|YP_002417557.1| putative excinuclease ABC subunit C [Vibrio splendidus LGP32]
 gi|218322955|emb|CAV19132.1| putative excinuclease ABC subunit C [Vibrio splendidus LGP32]
          Length = 246

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 137/262 (52%), Gaps = 21/262 (8%)

Query: 351 SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKN 410
           + T K++ +++     K+  +  ++  I  R+E +D SH MG S +   VV  + G VK 
Sbjct: 3   AITTKINHKMTINQRFKELQEVLSMDVIK-RMECFDISHTMGESTIASCVVYNQEGPVKP 61

Query: 411 QYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILD 470
           +YR++N+    +   DD A M   LERR+S+ +  ++                PD++ +D
Sbjct: 62  EYRRYNI--TGITGGDDYAAMAQALERRYSKQLDVDK---------------IPDIIFID 104

Query: 471 GGKGQLSAAQGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           GGKGQL+ A  ++ +   +   R  ++ IAKG  R  G+E     +GE   L    P L+
Sbjct: 105 GGKGQLNRAHEIISQYWGDWPFRPRMMGIAKGVTRKPGLETLVTLEGEEFNLPSDAPALH 164

Query: 529 FIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            IQ +RDE+H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R++ E
Sbjct: 165 LIQHIRDESHNHAIAGHRAKRGKTRRTSALEGIEGVGPKRRQSLLKYMGGLQELKRATVE 224

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            +A + GIS  +A  IY    +
Sbjct: 225 EIAKVPGISHSLAENIYQALKQ 246


>gi|330723482|gb|AEC45852.1| excinuclease ABC subunit C [Mycoplasma hyorhinis MCLD]
          Length = 561

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 125/595 (21%), Positives = 219/595 (36%), Gaps = 61/595 (10%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  +  P+  GVY+ LD    VLYVGKA N+  R+K Y   + ++++   +I+Q ++I F
Sbjct: 8   IEKKDFPKTFGVYKFLDEYKNVLYVGKAENIYNRMKQYAAGHINSYKTHSLINQTDDIEF 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T ++  AL+LE   IK  KP FNILL+DD ++PYI I        +      +  +  
Sbjct: 68  FITNSKANALILEDKWIKLYKPNFNILLKDDHTYPYIEINKNLD---IKLAYKIANKRNF 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF                                  L  ++K  +G     +S E+ 
Sbjct: 125 YFGPFVKKSDAWNLTRF----------------------LESKVKYENGLPINSLSPEEK 162

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            + +   KK L   N +  ++I         +E+Y  A   +    ALS +Q   +S   
Sbjct: 163 NQKLEICKKILKLKNASFLKQILEEEALFVQQENYVRANELKQIRQALSDLQQQKESITL 222

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                +D   +   +    I   F+  G         L         +    FL+ +Y +
Sbjct: 223 ANNKDVDFIFVAQYQEFVFISLLFYRNGSLFSYKNLNLSLIFNLE--ETFIMFLKNYYKN 280

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ I+L    E              +     +    +  K  +              
Sbjct: 281 NLIPDQIVLDNLWETLDFKSELSSLNITFSNNKKLDLIMQMAK--DNNQFFVQERLKILQ 338

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             +    ++L+  ++   +     +I I DNSH    + V  ++            R FN
Sbjct: 339 KEQQKENIVLEKLSQDLKVAKAD-KIMIIDNSHSNLQNIVTGVIFFINGVHQSKFNRFFN 397

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  N    + D   +   +++ FS                       PD++ +DG + Q+
Sbjct: 398 VSKNL---KSDIDFIYESIKKYFS-----------------IKSFLKPDLIFVDGAQQQI 437

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
             AQ  LK+ N+   + +  I K          + + +    V N+      F+  ++ +
Sbjct: 438 KKAQQALKESNIY--VPLFGIVKNKNHKTH---YVLDQNLQKVENISQESFNFLSNMQIQ 492

Query: 537 AHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
              FA   HR +  K   S  LD++N I    +  LL  F T K I  ++ E L 
Sbjct: 493 VDEFAKIKHRNKNIKILTSSFLDQLN-IDKKTQDKLLTYFKTYKKIKEATEEELK 546


>gi|304372929|ref|YP_003856138.1| Excinuclease ABC subunit C [Mycoplasma hyorhinis HUB-1]
 gi|304309120|gb|ADM21600.1| Excinuclease ABC subunit C [Mycoplasma hyorhinis HUB-1]
          Length = 561

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 126/595 (21%), Positives = 219/595 (36%), Gaps = 61/595 (10%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  +  P+  GVY+ LD    VLYVGKA N+  R+K Y   + ++++   +I+Q ++I F
Sbjct: 8   IEKKDFPKTFGVYKFLDEYKNVLYVGKAENIYNRMKQYAAGHINSYKTHSLINQTDDIEF 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +T ++  AL+LE   IK  KP FNILL+DD ++PYI I        +      +  +  
Sbjct: 68  FITNSKANALILEDKWIKLYKPNFNILLKDDHTYPYIEINKNLD---IKLAYKIANKRNF 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGPF                                  L  ++K  +G     +S E+ 
Sbjct: 125 YFGPFVKKSDAWNLTRF----------------------LESKVKYENGLPINSLSPEEK 162

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS--- 237
            + +   KK L   N +  ++I         +E+Y  A   +    ALS +Q   +S   
Sbjct: 163 NQKLEICKKILKLKNASFLKQILEEEALFVQQENYVRANELKQIRQALSDLQQQKESITL 222

Query: 238 -IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
                +D   +   +    I   F+  G         L         +    FL+ +Y +
Sbjct: 223 ANNKDVDFIFVAQYQEFVFISLLFYRNGSLFSYKNLNLSLIFNLE--ETFIMFLKNYYKN 280

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P+ I+L    E              +     +    +  K  +              
Sbjct: 281 NLIPDQIVLDNLWETLDFKSELSSLNITFSNNKKLDLIMQMAK--DNNQFFVQERLKILQ 338

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             +    ++L+  ++   +     +I I DNSH    + V  ++            R FN
Sbjct: 339 KEQQKENIVLEKLSQDLKVAKAD-KIMIIDNSHSNLQNIVTGVIFFINGVHQSKFNRFFN 397

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
           +  N    + D   M   +++ FS                       PD++ +DG + Q+
Sbjct: 398 VSKNL---KSDIDFMYESIKKYFS-----------------IKSFLKPDLIFVDGAQQQI 437

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
             AQ  LK+ N+   + +  I K          + + +    V N+      F+  ++ +
Sbjct: 438 KKAQQALKESNIY--VPLFGIVKNKNHKTH---YVLDQNLQKVENISQESFNFLFNMQIQ 492

Query: 537 AHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
              FA   HR +  K   S  LD++N I    +  LL  F T K I  ++ E L 
Sbjct: 493 VDEFAKIKHRNKNIKILTSSFLDQLN-IDKKTQDKLLTYFKTYKKIKEATEEELK 546


>gi|301629963|ref|XP_002944101.1| PREDICTED: uvrABC system protein C-like [Xenopus (Silurana)
           tropicalis]
          Length = 267

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 85/272 (31%), Positives = 129/272 (47%), Gaps = 11/272 (4%)

Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKR---IEIYDNSHIMGCSAVGCM 399
            A  NA     + L+ E S Q   +   +   L         IE +D SH  G +     
Sbjct: 1   MAQQNADIQLARLLAEEGSQQARTRALAEVLDLSVENLDGLVIECFDISHTAGEATQASC 60

Query: 400 VVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS 459
           VV   +    ++Y +F      +   DD A MR VL+RR+  + + +        +   +
Sbjct: 61  VVFHHHKMQSSEYPRF--KIEGITGGDDYAAMRQVLQRRYRPVAEAQREAGGAEPQANKA 118

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA-L 518
               PD+V++DGGKGQ++ A+ V  +L ++    I  + KG  R  G+E+     G   +
Sbjct: 119 --RLPDLVLIDGGKGQVAMARAVFSELGLDLS-RIAGVEKGEGRKLGLEELVFADGREKV 175

Query: 519 VLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFG 576
            L      L  + ++RDEAHRFAIT  R  R K     S L++I GIGP ++  LLQ FG
Sbjct: 176 YLGRDSAALMLVAQVRDEAHRFAITGMRAARAKVRVGGSRLEDIPGIGPRKRARLLQRFG 235

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            V+ +  +S E LA++EGIS  +A  IY    
Sbjct: 236 GVRGVQDASVEDLATVEGISLALADTIYRALR 267


>gi|32474585|ref|NP_867579.1| excinuclease ABC subunit C [Rhodopirellula baltica SH 1]
 gi|32445124|emb|CAD75126.1| excinuclease ABC subunit C [Rhodopirellula baltica SH 1]
          Length = 474

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 128/254 (50%), Gaps = 6/254 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +  P+ PGVY M D AG V+YVGKA NL+ R  SY   + +   R    I  I +I F
Sbjct: 48  KVKTFPQSPGVYLMKDSAGVVIYVGKAKNLRSRASSYFLKAASEDARTADWIGDIADIDF 107

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T +EV+ALL+E+ +IK ++PR N  L+DDKSFPY++IT + + P +   R+  +    
Sbjct: 108 VETESEVDALLMESRLIKDIQPRNNKELKDDKSFPYLMITTREEFPRVEVTREPPSKGVK 167

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEI 175
            +GPF S  A+   I  +QR F  R+C+  +          RPCLL  I +C+ PC   I
Sbjct: 168 LYGPFTSAGALRGAIQVMQRIFKFRTCSLDISESDERWQWFRPCLLASINQCTAPCNFRI 227

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y   +   + FL GG   L  ++   M  A+   D+E A + RD +  +  ++   
Sbjct: 228 SKEDYRRDIKRLQTFLDGGKTKLLREMRGEMKAASKALDFERAAVLRDEINMIERLEERG 287

Query: 236 DSIYNRMDCFSLYH 249
           +   +         
Sbjct: 288 ELDTHAQPEVFYID 301



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 25/198 (12%)

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
             Q  L    K   L   P+ IE  D +H+ G   V  +V   +    K  YR+F +   
Sbjct: 301 DPQKGLAGLKKVLGLSETPRVIEGVDIAHLGGNETVASLVQFIDGLPFKPGYRRFRI--Q 358

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           +VK  DD   +  V+ RRF  L   +E              S+PDV+++DGGKGQL+AA 
Sbjct: 359 EVKGIDDFRSIYEVVSRRFRGLSDRQE--------------SFPDVLLIDGGKGQLNAAM 404

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
              +  +++   T+IS+AK  +     E F     E L L+     L  +Q +RDE+HRF
Sbjct: 405 AAFRDQDIQ-PPTVISLAKRDE-----EIFRPGISEPLKLSKNAFALRLLQYVRDESHRF 458

Query: 541 AITTHRKRRKKAAYSPLD 558
           A   H   R K   S L+
Sbjct: 459 AQHYHHILRSK---SSLE 473


>gi|157827480|ref|YP_001496544.1| excinuclease ABC subunit C [Rickettsia bellii OSU 85-389]
 gi|157802784|gb|ABV79507.1| Excinuclease ABC subunit C [Rickettsia bellii OSU 85-389]
          Length = 356

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 114/337 (33%), Positives = 173/337 (51%), Gaps = 3/337 (0%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PG+Y M +    ++Y+GKA NL+KR+ +Y   NN   RI  M+ Q+  + + VT +
Sbjct: 13  VPTLPGIYLMYNSDKEIIYIGKAKNLKKRL-NYYSKNNLRGRIARMVHQVYLVEYKVTIS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EA LLE  +IK+ +PRFNILLR DKS  YI +   H  P L K    ++     FGPF
Sbjct: 72  ESEAFLLETQLIKQHQPRFNILLRRDKSASYIKLRSDHDFPTLVKCYLDNSTGNKLFGPF 131

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            S   ++  I  LQ+ F LR+C+DS F  R RPCL ++I +C  PCTG IS E Y E + 
Sbjct: 132 TSGHQIDLIITELQKIFKLRTCSDSDFAFRKRPCLEYEIGKCFAPCTGNISKEDYAELIE 191

Query: 186 EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCF 245
           +   FLS     L  K+A  M   +    +E A + RDR+  +   +      Y  +   
Sbjct: 192 QINDFLSSNIEKLLGKLALKMQALSDHSHFEKAALIRDRINLIKLSKLRIGKQYEGIIDA 251

Query: 246 SLYHNKNLACIQTCF--FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
            +   ++ +  Q     +  GQ  G   +    +  +T A++L  F+ QFY  +   + I
Sbjct: 252 DVIVIRDDSRFQIKVLLYRGGQKWGEQNYSPIYNQTNTKAEVLESFIGQFYQTRKPAKEI 311

Query: 304 LLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340
           +++   + +  +  S  K Y  K K  VPK+G K +I
Sbjct: 312 IINVPIQNSEPIISSLKKLYNIKTKFIVPKRGSKAQI 348


>gi|154505836|ref|ZP_02042574.1| hypothetical protein RUMGNA_03377 [Ruminococcus gnavus ATCC 29149]
 gi|153793854|gb|EDN76274.1| hypothetical protein RUMGNA_03377 [Ruminococcus gnavus ATCC 29149]
          Length = 261

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 14/255 (5%)

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
              E      +++  K   +  I  R+E YD S+  G  +VG MVV       +N YRKF
Sbjct: 20  KREEGRTIGAVREIEKLIGISDIR-RMEAYDISNTNGFESVGSMVVYERGKPKRNDYRKF 78

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
            +    ++  DD   MR VL RRF+  +K ++       K+   F S+PD++++DGGKGQ
Sbjct: 79  KIKG--IEGADDYGSMREVLTRRFTHGLKEQKE-----SKEIGGFSSFPDLILMDGGKGQ 131

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           ++ A  VL  L +   I +  + K              + + + ++        I R++D
Sbjct: 132 VNVALQVLGDLRL--NIPVCGMVKDDYHRTRG---LYYENQEIAIDKNSEAFRLITRIQD 186

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI  HR  R K   +S LD+I GIGP R++ L+++F ++  I  +S E LA I  
Sbjct: 187 EAHRFAIEYHRSLRSKGQVHSILDDIEGIGPARRKALMRNFMSLDAIKAASVEELAQIPS 246

Query: 595 ISKKIACKIYNHFHK 609
           +++K A  +Y  FHK
Sbjct: 247 MNEKAAESVYKFFHK 261


>gi|327541275|gb|EGF27818.1| excinuclease ABC subunit C [Rhodopirellula baltica WH47]
          Length = 474

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 128/254 (50%), Gaps = 6/254 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +  P+ PGVY M D AG V+YVGKA NL+ R  SY   + +   R    I  I +I F
Sbjct: 48  KVKTFPQSPGVYLMKDSAGVVIYVGKAKNLRSRASSYFLKAASEDARTADWIGDIADIDF 107

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T +EV+ALL+E+ +IK ++PR N  L+DDKSFPY++IT + + P +   R+  +    
Sbjct: 108 VETESEVDALLMESRLIKDIQPRNNKELKDDKSFPYLMITTREEFPRVEVTREPPSKGVK 167

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEI 175
            +GPF S  A+   I  +QR F  R+C+  +          RPCLL  I +C+ PC   I
Sbjct: 168 LYGPFTSAGALRGAIQVMQRIFKFRTCSLDISESDERWQWFRPCLLASINQCTAPCNFRI 227

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y   +   + FL GG   L  ++   M  A+   D+E A + RD +  +  ++   
Sbjct: 228 SKEDYRRDIKRLQTFLDGGKTKLLREMRGEMKAASKALDFERAAVLRDEINMIERLEERG 287

Query: 236 DSIYNRMDCFSLYH 249
           +   +         
Sbjct: 288 ELDTHAQPEVFYID 301



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 25/198 (12%)

Query: 361 SHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN 420
             Q  L    K   L   P+ IE  D +H+ G   V  +V   +    K  YR+F +   
Sbjct: 301 DPQKGLAGLKKVLGLSETPRVIEGVDIAHLGGNETVASLVQFIDGLPFKPGYRRFRI--Q 358

Query: 421 DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQ 480
           +VK  DD   +  V+ RRF  L   +E              S+PDV+++DGGKGQL+AA 
Sbjct: 359 EVKGIDDFRSIYEVVSRRFRGLSDRQE--------------SFPDVLLIDGGKGQLNAAM 404

Query: 481 GVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
              +  +++   T+IS+AK  +     E F     E L L+     L  +Q +RDE+HRF
Sbjct: 405 AAFRDQDIQ-PPTVISLAKRDE-----EIFRPGISEPLKLSKNAFALRLLQYVRDESHRF 458

Query: 541 AITTHRKRRKKAAYSPLD 558
           A   H   R K   S L+
Sbjct: 459 AQHYHHILRSK---SSLE 473


>gi|149173854|ref|ZP_01852483.1| excinuclease ABC subunit C [Planctomyces maris DSM 8797]
 gi|148847384|gb|EDL61718.1| excinuclease ABC subunit C [Planctomyces maris DSM 8797]
          Length = 458

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/254 (34%), Positives = 128/254 (50%), Gaps = 6/254 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
              Q P  PGVY M D   RV+YVGKA NL+ R  SY   +     R   ++++I +I +
Sbjct: 32  KVRQFPTTPGVYLMKDAQARVIYVGKAVNLKSRASSYFNQAAAVERRTAELVTEIADIDY 91

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TEV+ALLLEA +IK ++PRFN  L+DDK+FPY+ IT +   P +   R   +    
Sbjct: 92  LETETEVDALLLEARLIKDIRPRFNSELKDDKTFPYLEITTREDFPRVEFTRTPKSKGTK 151

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEI 175
            +GPF +   +  TI  LQ+ F  R+C+  +          RPCLL  I +C+ PC   I
Sbjct: 152 LYGPFTNAKQLRGTITVLQKIFRFRNCSLDIEEGDEKWRWFRPCLLHSINQCTAPCNLRI 211

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E Y + +++ K FL G    L  ++ + M  A+  + YE A   RD +  L  I+   
Sbjct: 212 SKEDYRKDINKLKLFLDGKKDRLLNEMRKEMLAASEAKLYEKAARLRDEIQLLESIKLRG 271

Query: 236 DSIYNRMDCFSLYH 249
           +   +         
Sbjct: 272 NLEDHAQPEVFYID 285



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 22/241 (9%)

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
             + +           +     + E + +    L      H Q     I  +  ++   K
Sbjct: 236 NEMRKEMLAASEAKLYEKAARLRDEIQLLESIKLRGNLEDHAQPEVFYIDPKKGMQGLKK 295

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
            F LP +P+RIE  D +H+ G   V  +V   +    K+ Y++F +    VK  DD A +
Sbjct: 296 VFGLPELPRRIEGVDIAHLQGGETVASLVQFIDGLPFKHGYKRFKIRT--VKGIDDFASI 353

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
           R V+ RR  +L +  E              ++PD++++DGGKGQL+AA   +++L VE  
Sbjct: 354 REVVSRRIRRLHQEGE--------------TFPDILLIDGGKGQLNAAMTAMRELGVEPP 399

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
            T IS+AK  +     E +   + E   L+     L  +Q +RDE+HRFA   H   RKK
Sbjct: 400 FT-ISLAKREE-----EVYVPGETEPRRLSRHSYGLRLLQYVRDESHRFAQHYHHLLRKK 453

Query: 552 A 552
           +
Sbjct: 454 S 454


>gi|195927400|pdb|3C65|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvrc 5'
           Endonuclease Domain
          Length = 226

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/235 (33%), Positives = 124/235 (52%), Gaps = 22/235 (9%)

Query: 377 HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436
             P+RIE +DNS+I G   V  +VV  +    K +YRK+ +    V   +D    R V+ 
Sbjct: 12  PAPRRIEAFDNSNIYGADPVSALVVFLDGKPAKKEYRKYKVKT--VAGPNDYETXREVVR 69

Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITII 495
           RR+++++K                   PD++I+DGGKG LSA + VL+ +L ++  + + 
Sbjct: 70  RRYTRVLKEG--------------LPLPDLIIIDGGKGHLSAVRDVLENELGLD--VPLA 113

Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-Y 554
            +AK  K     E       + + L+ +    Y +QR++DE HRFA+  HRK R+K   +
Sbjct: 114 GLAKDEKHRTS-ELLAGDPPDVVPLDRQSQEFYLLQRIQDEVHRFAVXFHRKTRQKTMFH 172

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           S LD+I G+G  RK+ LL  FG+VK +  ++ E L     I + +A KIY   H+
Sbjct: 173 SVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIPRAVAEKIYEKLHE 226


>gi|283770206|ref|ZP_06343098.1| GIY-YIG catalytic domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283460353|gb|EFC07443.1| GIY-YIG catalytic domain-containing protein [Staphylococcus aureus
           subsp. aureus H19]
          Length = 197

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 6/184 (3%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
            PG Y M D   +V+YVGKA  L+ R++SY     H  + T ++ +I +  F VT +E E
Sbjct: 2   EPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGA-HDAKTTRLVGEIRHFEFIVTSSETE 60

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASV 128
           +LLLE N+IK+ +PR+NILL+DDKS+P+I IT K K P L   R      G YFGP+ + 
Sbjct: 61  SLLLELNLIKQYQPRYNILLKDDKSYPFIKIT-KEKYPRLLVTRTVKQGTGKYFGPYPNA 119

Query: 129 DAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAK 188
            + ++T   L R +  R       +   + CL + I +C GPC  ++   KY +   E  
Sbjct: 120 YSAQETKKLLDRIYPYRK----CDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTKEIT 175

Query: 189 KFLS 192
            FL 
Sbjct: 176 DFLE 179


>gi|260655865|ref|ZP_05861334.1| excinuclease ABC, C subunit [Jonquetella anthropi E3_33 E1]
 gi|260629481|gb|EEX47675.1| excinuclease ABC, C subunit [Jonquetella anthropi E3_33 E1]
          Length = 496

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 134/254 (52%), Gaps = 4/254 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61
            +++P  PGVY M D  G+++YVGKA NL++R+ SY +  +    R+  +++ + +I   
Sbjct: 8   LKKLPNRPGVYLMHDERGKIIYVGKAKNLKRRVSSYFNHKDFAIPRLRKLVATVCDITTI 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T ++ EA ++E+ +IK  +P FN+ L+    +P+ ++T     P L   R    I+G Y
Sbjct: 68  RTASDAEAYIVESRLIKAYQPFFNVELKMGTRYPWAVVT-DEPFPRLVVTRR-RDIKGRY 125

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKY 180
           FGPF S  A++  ++ +++ F LRSC   + R + +RPCL + I +C  PC G  ++ +Y
Sbjct: 126 FGPFISAGALKDVLHIIEKAFPLRSCKYDLTRTKLSRPCLDYGIGKCDAPCVGLCTAREY 185

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E V +    LSG   +L  ++   M +   + ++E+A + RD + +L  +     +   
Sbjct: 186 GERVDDVILLLSGQTADLIARLRARMEECASRLEFEAAGVARDAIRSLWRMTRSQVTGTL 245

Query: 241 RMDCFSLYHNKNLA 254
             D          A
Sbjct: 246 SDDLDEDSWTAMKA 259



 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 26/251 (10%)

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +      +K   +   LP +P RI+ +D SH  G    G  VV  +     + YR+F + 
Sbjct: 250 DEDSWTAMKALQELVGLPTVPWRIDGFDISHHAGYETYGVSVVFEQGYPNPSLYRRFKIR 309

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V   DD   +   + R++   ++ E                 P + ++DGG  QL+ 
Sbjct: 310 T--VDWIDDFRSIEETVTRKYRMALRAE--------------APLPQLAMIDGGPQQLAF 353

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEA 537
           A+  L +L +   +  +++A         E  +       + L   DP L  +QR+RDEA
Sbjct: 354 ARKALAELEL--NLPTVALA------EEEELIYTAPDAAPIRLPRNDPALRLLQRVRDEA 405

Query: 538 HRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           HRFAIT+HR+    + + S L++I GIG     LLL +FG+V+ ++  S E L+S++GI 
Sbjct: 406 HRFAITSHRRASTARFSRSALEDIPGIGKHTSALLLSAFGSVRRVAGLSEEELSSVKGIG 465

Query: 597 KKIACKIYNHF 607
              A +I    
Sbjct: 466 PVTARRIKEAL 476


>gi|309805714|ref|ZP_07699754.1| putative excinuclease ABC subunit C [Lactobacillus iners LactinV
           09V1-c]
 gi|308164967|gb|EFO67210.1| putative excinuclease ABC subunit C [Lactobacillus iners LactinV
           09V1-c]
          Length = 237

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 6/235 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +P+CPG Y M D+ G+V+YVGK+ NL+ R++SY  S     R   ++  IN+    
Sbjct: 9   KLKLLPDCPGCYLMKDLNGKVIYVGKSKNLKNRVRSYFKSKQVGRR-AELVRDINDFEII 67

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  ++ EA LLE  +IK+ +P +N+ L++   +P+I IT+  + P +         +G Y
Sbjct: 68  VVSSDKEAFLLEITLIKKYQPYYNVQLKNGGGYPFIEITN-ERDPEVKLTSIIKKDKGYY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ +V A + T+  +Q+ + LR C+  +     RPCL + + +C G C  E+SS+KY 
Sbjct: 127 FGPYPNVYAAQATLKFIQKMWPLRRCSGKL----GRPCLYYNMGQCLGSCFKEVSSDKYD 182

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
             + + K FL+G     K ++ + M  A+   ++E A  +RD+L+ +        
Sbjct: 183 HQIKQIKCFLNGDITKAKTELIKKMQIASDNLEFERAGEYRDQLSYIEQTVEKQK 237


>gi|269836971|ref|YP_003319199.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
           20745]
 gi|269786234|gb|ACZ38377.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
           20745]
          Length = 658

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 3/225 (1%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY M     RV+YVGKA +L+ R+ SY      +T ++  ++  I  I    T 
Sbjct: 294 IPHAPGVYLMYGARERVIYVGKAKDLRNRVSSYYSQPLGYTRKMDGLLESIERIEVVETG 353

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           +E+EALLLEA  I+R +P++N  +R+++++PYI I   +  P +   R  +     YFGP
Sbjct: 354 SELEALLLEAQFIRRYRPQYNTQMRNNEAYPYIKIDIGNPWPRVTLTRQRADDGAVYFGP 413

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVF--RHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           F    +  +T++ +   F LR+CA S    R    PCL   + +C GPCTG +  + Y +
Sbjct: 414 FRVARSARETVDLINEVFPLRTCARSFRTARSYGSPCLRLSLGQCLGPCTGMVDRDAYRQ 473

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAA 227
            V +   FL GG   +  ++ + +     + D+E A   RDR+  
Sbjct: 474 AVQDVIGFLRGGRDEVMARLHQELVACAERLDFERASRLRDRIRR 518


>gi|281356792|ref|ZP_06243283.1| excinuclease ABC, C subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316919|gb|EFB00942.1| excinuclease ABC, C subunit [Victivallis vadensis ATCC BAA-548]
          Length = 505

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 143/297 (48%), Gaps = 24/297 (8%)

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK 372
           ++ E         + +     +     +              +L         ++   + 
Sbjct: 230 AIREKMTAAAMEQRFEKAAHLRDVLTNLEAVFGKRNRIFERPELPGTAPGMAAVRALGEA 289

Query: 373 FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMR 432
             L  +P RI  +D S+I+G  AV  +V   E    ++ YR+F +    V   DD AMM 
Sbjct: 290 LGLEKLPSRIIGFDISNILGKLAVASLVAFKEGRPDRDNYRRFKIRT--VHQSDDFAMMH 347

Query: 433 MVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRI 492
            VL R F +L++ +  L              PD+V++DGGKGQLS+A   L ++     +
Sbjct: 348 EVLVRHFGRLLEEKRPL--------------PDLVMVDGGKGQLSSAIDALVEIGCP-PL 392

Query: 493 TIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA 552
            +I +AK  +     E +   + E +VL+  +P L  +Q LRDEAHRFAIT HR+ R K 
Sbjct: 393 PVIGLAKRNE-----EIYLPGRSEPVVLDRHNPALRMLQALRDEAHRFAITYHRELRNKR 447

Query: 553 A-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA-SIEGISKKIACKIYNHF 607
              S LDEI GIG  RK+ LL++FG+++ + +++P+ +A  + GI + +A KI    
Sbjct: 448 IEQSRLDEIQGIGDTRKKQLLRAFGSLRALKKATPDEIAEKVPGIGEALAEKILAAL 504



 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/238 (34%), Positives = 122/238 (51%), Gaps = 4/238 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN---HTHRITHMISQINNIR 59
             ++P  PGVY   D  G+V+YVGKA NL++R+ SY   +       ++  +I+ I++  
Sbjct: 28  PSEIPAKPGVYVYRDRFGKVIYVGKAANLRRRMSSYFQPSRVVRADAKLRSLINSISDWS 87

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119
           + V  TE EAL+LE+ +IK   P +N+L+RDDK +  + I    K P L   R       
Sbjct: 88  YEVVRTEDEALILESRLIKDFAPHYNVLMRDDKRYLLLKIDWHEKFPTLKLARLKKNDGA 147

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSE 178
            YFGPF    A++ T+  L   F LR+C DS     TR  CL   +K C  PCTG ++ E
Sbjct: 148 QYFGPFPKGGALKMTLEFLLAHFGLRACRDSEPDEETRKRCLKRIVKDCCAPCTGAVTPE 207

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +Y E V +A   L+G    L   I   M  A +++ +E A   RD L  L  +    +
Sbjct: 208 EYRERVEQAVAVLNGDIAELTAAIREKMTAAAMEQRFEKAAHLRDVLTNLEAVFGKRN 265


>gi|87310709|ref|ZP_01092836.1| excinuclease ABC subunit C [Blastopirellula marina DSM 3645]
 gi|87286466|gb|EAQ78373.1| excinuclease ABC subunit C [Blastopirellula marina DSM 3645]
          Length = 458

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 131/254 (51%), Gaps = 6/254 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
              + P  PGVY M DI GRV+YVGKA NL+ R  SY ++      R  + + +I +  F
Sbjct: 32  KVRKFPTTPGVYLMKDIQGRVIYVGKAKNLRSRASSYFNAEAAVDVRTGYWVKEIADADF 91

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T +EV+ALL+EA ++K ++P+FN  L+DDKSFPY++I+ +   P +   R+       
Sbjct: 92  VETDSEVDALLMEARLVKDIQPKFNKDLKDDKSFPYLMISQREDFPRVEFTREPQEKNAK 151

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEI 175
            +GPFA+  A+   I  LQR F  R+C+  +  +       RPCLL  I +C+ PC   I
Sbjct: 152 LYGPFANAGALRGAIQVLQRIFKFRTCSLDIDENDERWRWFRPCLLASIDQCTAPCNLRI 211

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S E+Y + +   + FL G    L +++   M +A+ +  +E A   RD +  L  +    
Sbjct: 212 SKEEYRKDIRRLQMFLEGNRDRLLKQLREEMLEASKELQFEKAAKLRDEIDMLERLDERG 271

Query: 236 DSIYNRMDCFSLYH 249
           +   +         
Sbjct: 272 ELETHAQPEVFYID 285



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 102/243 (41%), Gaps = 22/243 (9%)

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
             L E         + +     + E   +          +H Q     I  +  L    K
Sbjct: 236 KQLREEMLEASKELQFEKAAKLRDEIDMLERLDERGELETHAQPEVFYIDPKKGLAGLRK 295

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
              LP  P+ IE  D +H+ G   V  +V   +    K  YR++ +    VK  DD   +
Sbjct: 296 VLQLPTTPRSIEGVDIAHLQGGETVASLVQFLDGLPFKPGYRRYKIQG--VKGIDDFRSI 353

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
             V+ RRF +L  + E               +PDV+++DGGKGQL+AA    + L +E  
Sbjct: 354 HEVVARRFKKLHADGE--------------VFPDVLLIDGGKGQLNAALAAFRDLQIE-P 398

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
            T+IS+AK  +     E F   + E L L+     L  +Q +RDEAHRFA   H   RKK
Sbjct: 399 PTLISLAKREE-----EIFRPGQSEPLRLSRHAYALRLLQYVRDEAHRFAQHYHHILRKK 453

Query: 552 AAY 554
             +
Sbjct: 454 NTF 456


>gi|283777905|ref|YP_003368660.1| excinuclease ABC C subunit domain-containing protein [Pirellula
           staleyi DSM 6068]
 gi|283436358|gb|ADB14800.1| excinuclease ABC C subunit domain protein [Pirellula staleyi DSM
           6068]
          Length = 493

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 124/254 (48%), Gaps = 6/254 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
              + P  PG+Y M D AGRV+YVGKA NL+ R  SY        +R    + +I +I +
Sbjct: 67  KVREFPRTPGIYLMKDDAGRVIYVGKAKNLRSRAGSYFLRGAKEEYRTAIWVDEICDIDY 126

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
               +EV+ALL+EA +IK ++P+ N  L+DDK+FPY++I+ +   P +   R  +     
Sbjct: 127 VECESEVDALLMEARLIKDIQPKHNKELKDDKTFPYLMISTREDFPRVEVTRQPADRGVK 186

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT-----RPCLLFQIKRCSGPCTGEI 175
            FGPFAS  ++   +  LQR F  R+C+  +          RPCLL  I++C+ PC   I
Sbjct: 187 LFGPFASAGSLRGAVQVLQRIFKFRTCSLDIEDGDDRWRWFRPCLLASIQQCTAPCNLRI 246

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S ++Y   +     FL GG   L +++   M  A+    +E A   RD +  L  +    
Sbjct: 247 SKDEYRRDIDRLITFLEGGKTRLLKQLTLEMQAASKALQFEVAARLRDEIKMLETLDRRG 306

Query: 236 DSIYNRMDCFSLYH 249
               +         
Sbjct: 307 SIDVHAQPEVFYID 320



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 97/226 (42%), Gaps = 25/226 (11%)

Query: 334 QGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGC 393
           + E + +       +   H Q     I     L    K   L   P+ IE  D +H+ G 
Sbjct: 293 RDEIKMLETLDRRGSIDVHAQPEVFYIDPTKGLAGLKKVLGLAEQPRTIEGMDIAHLGGG 352

Query: 394 SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453
             V  +V   +    K  YR++ +    V   DD   M  V+ RR+ + +   E      
Sbjct: 353 ETVASVVQFLDGLPFKAGYRRYRIVG--VDGIDDFRSMHEVVSRRYRKRVDEGE------ 404

Query: 454 KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK 513
                    +PD++++DGGKGQL+AA    +  ++    T+IS+AK  +     E F   
Sbjct: 405 --------PFPDILLIDGGKGQLNAAMAAFRDQDI-KPPTVISLAKQEE-----EIFLPG 450

Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDE 559
           + E++ L+     L  +Q +RDEAHRFA   H   R+K   S LD 
Sbjct: 451 ERESIKLSRHAFALRLLQYVRDEAHRFAQHYHHILRRK---SQLDG 493


>gi|223936896|ref|ZP_03628805.1| excinuclease ABC C subunit domain protein [bacterium Ellin514]
 gi|223894465|gb|EEF60917.1| excinuclease ABC C subunit domain protein [bacterium Ellin514]
          Length = 559

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 119/237 (50%), Gaps = 4/237 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH---THRITHMISQINNI 58
              ++P  PG+Y M D  G V+YVGKA +L+KR+  Y H +       +   +   I ++
Sbjct: 10  KLNELPHKPGIYLMKDRFGTVIYVGKARDLRKRVSQYFHPSRKMGWDLKFKALTEAIYDL 69

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
              V  +E EALLLE  +IK   PR+NI  +DDK F  + +     IP     R      
Sbjct: 70  DVHVVRSEPEALLLEGKLIKEFHPRYNISFKDDKRFLMLKVNLNDPIPRFTLTRFKQDDG 129

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISS 177
             YFGPFA   A++ T+  ++R F LR C       R  + CL   +K C+ PC G ++ 
Sbjct: 130 ARYFGPFAHSSALKNTLTMIRRQFHLRGCRPLTPNERDYKHCLYGNLKHCTAPCIGNVTR 189

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           E+Y+  V  A  FLSG    ++E++A  M +A   +DYE A + RD ++ L      
Sbjct: 190 EQYLAQVQAACDFLSGQGEEMQEQLAEEMKKAAAAQDYERAAMLRDAISDLRQTTKK 246



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 133/288 (46%), Gaps = 31/288 (10%)

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
                 L   I  Q  L +  +   L   P RIE +D S+I G  AV  +V        +
Sbjct: 251 ERLPYNLPLAIEPQRDLAELGQVLDLAGPPMRIEGFDISNISGTFAVSSLVSFKNGRPDR 310

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS------- 462
           + YRKF +    V  Q+D A M   + RR+S+L++  +      +    +          
Sbjct: 311 SNYRKFKMKS--VVGQNDFACMAETIRRRYSRLLREGKEARKAMEAASANAVPQPSENAS 368

Query: 463 --------------WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508
                          PD++++DGGKGQL+AA   L+KL +  +I II +AK  +     E
Sbjct: 369 EVQPALPGSPLPSNLPDLILIDGGKGQLNAACEELEKLGLS-QIPIIGLAKEFE-----E 422

Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLR 567
            +   + E L L+     L  +QR+RDE+HR A T + + R KK + S LDE   IG  R
Sbjct: 423 IYRPGQSEPLRLSHASGALKLLQRVRDESHRLANTYNAELRLKKISESILDEFPNIGQRR 482

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           K  LL+ FG+V+ +  ++ E +A + G   K+A  +     +  S TP
Sbjct: 483 KADLLKKFGSVQRLRIATVEQIAEVPGFGGKMAADLKAFL-EARSSTP 529


>gi|111657554|ref|ZP_01408294.1| hypothetical protein SpneT_02001255 [Streptococcus pneumoniae
           TIGR4]
 gi|148988984|ref|ZP_01820384.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP6-BS73]
 gi|147925481|gb|EDK76558.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP6-BS73]
          Length = 243

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 22/241 (9%)

Query: 377 HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLE 436
             P RIE +DNS+IMG S V  MVV       K  YRK+ +    V   DD A MR V+ 
Sbjct: 5   PTPVRIESFDNSNIMGTSPVSAMVVFVNGKPSKKDYRKYKIKT--VVGPDDYASMREVIR 62

Query: 437 RRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQG-VLKKLNVENRITII 495
           RR+ ++ +                 + PD++++DGG+GQ++ A+  + ++L ++  I I 
Sbjct: 63  RRYGRVQREA--------------LTPPDLIVIDGGQGQVNIAKQVIQEELGLD--IPIA 106

Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS 555
            + K  K     E  F    E + L+      + +QR++DE HRFAIT HR+ R K ++S
Sbjct: 107 GLQKNDKHQT-HELLFGDPLEVVDLSRNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFS 165

Query: 556 P-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             LD I+G+GP RK+ L++ F ++  I  +S + +  + G+ + +A  +    +      
Sbjct: 166 SQLDGIDGLGPKRKQNLMKHFKSLTKIKEASVDEIVEV-GVPRVVAEAVQRKLNPQGEAL 224

Query: 615 P 615
           P
Sbjct: 225 P 225


>gi|189218734|ref|YP_001939375.1| excinuclease ABC subunit C [Methylacidiphilum infernorum V4]
 gi|189185592|gb|ACD82777.1| Excinuclease ABC subunit C [Methylacidiphilum infernorum V4]
          Length = 486

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH---THRITHMISQINNI 58
               +P  PGVY   D   RV+YVGKA +L KR+  Y H +       ++  ++    ++
Sbjct: 8   KIRDLPHKPGVYLFKDRFNRVIYVGKAVDLHKRVSQYFHPSRRLRADRKLNALVEAAVDL 67

Query: 59  RFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
            + V  +E EA+LLE  +IK  +PR+N+  RDDK F  + +      P     R      
Sbjct: 68  EYYVVHSEAEAVLLEGRLIKEFRPRYNVSFRDDKRFLLVKVDLSEPFPRFQVTRLKKQDN 127

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISS 177
             YFGPFAS  A+  T+N +++ F LRSC+  +   +  + CL   IK CS PC  +IS 
Sbjct: 128 ARYFGPFASSSALRTTLNLMKKKFGLRSCSALIPSEKDYKHCLDHIIKNCSAPCIAKISQ 187

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223
            +Y+E V  A  FL G +  + ++I   M +A   +D+E A   R+
Sbjct: 188 AEYLERVKMACAFLEGKSKEMIDEIRLKMEEAAQAQDFEKAAELRN 233



 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 148/301 (49%), Gaps = 25/301 (8%)

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH--RSHTQKLSTEISHQMILK 367
           +   +++    K           K  E R ++E         R   ++L    S    L+
Sbjct: 204 KSKEMIDEIRLKMEEAAQAQDFEKAAELRNLLEALEETTRPARRFVKQLPKVSSPLEDLE 263

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           +     ALP +P  IE +D S+I     V  MV   E    ++ YR++ +    V  QDD
Sbjct: 264 ELQAVLALPQVPHLIECFDISNISSTHKVASMVTFREGKADRSSYRRYRIKT--VAGQDD 321

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M+ V+ RR+ +++                    PD++++DGGKGQLS+A   L  L 
Sbjct: 322 FACMQEVIRRRYKRVLDEG--------------GRLPDLIVVDGGKGQLSSALKALHSLQ 367

Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547
           + N + +I +AK  +     E +     + LVL+ R   L  +QR+RDEAHR A + H+ 
Sbjct: 368 L-NDLCVIGLAKENE-----EIYREALPDPLVLDKRSKALRLLQRIRDEAHRVANSYHQL 421

Query: 548 R-RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
             +K+   S LD+  GI   RK+LL+++FG+++ I +SS E +A+++GI KK+A +I + 
Sbjct: 422 LLKKRMRESILDDCPGISENRKKLLIRAFGSIEKIKKSSVEEIAAVKGIGKKLAEQILSF 481

Query: 607 F 607
            
Sbjct: 482 L 482


>gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 684

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
             PE PGVY M D  G+V+YVGKA  L+ R+ SY      +T ++  ++  +  I   V 
Sbjct: 325 NFPEKPGVYLMRDEHGQVIYVGKAKCLKDRLGSYYSQPLGYTRKMDGLLQNVREIETRVL 384

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EALL+E+ +IK L+P +N+ LR+ + +P+I I  +H  P +Y  R+ +     YFG
Sbjct: 385 GSELEALLVESRLIKELQPMYNVQLRNYELYPFIKIDVQHAFPRVYATREIAADGARYFG 444

Query: 124 PFASVDAVEKTINSLQRTFFLRSCAD--SVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           PF S   V+ TI  +Q+ F +R+C          + PCL   + RC  PC G +  ++Y 
Sbjct: 445 PFRSRRVVDATIELMQKIFPVRTCTRSLPPAAKASDPCLRHHLGRCPAPCRGGVDEDEYR 504

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223
           + + +   FL G   +L +++ R M +A  + ++E A   RD
Sbjct: 505 KIIEQVCAFLGGEREDLFDRLRRQMFEAAQQLNFERAAWLRD 546


>gi|149198118|ref|ZP_01875165.1| excinuclease ABC subunit C [Lentisphaera araneosa HTCC2155]
 gi|149138720|gb|EDM27126.1| excinuclease ABC subunit C [Lentisphaera araneosa HTCC2155]
          Length = 486

 Score =  219 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 24/245 (9%)

Query: 368 DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD 427
           D  K+  L   P  IE +DNS+  G  AV  MV   +       YR F +    V+  DD
Sbjct: 264 DLKKRLELDITPSVIECFDNSNFQGTHAVASMVRFVDGKPDNKSYRHFKIKT--VEGPDD 321

Query: 428 CAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLN 487
            A M+ ++ RR+S+L++ +  L              PD++++DGGKGQLS+A   + +L 
Sbjct: 322 FASMKEIVYRRYSRLLREKRPL--------------PDLILIDGGKGQLSSALQSIDELG 367

Query: 488 VENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547
           ++  I    +AK  +       F     E  +L      L  +Q LRDE+HRFAI  HR+
Sbjct: 368 ID-HIPTYGLAKKHEL-----LFTRNDSEGKILPRTSAGLKMLQHLRDESHRFAINFHRQ 421

Query: 548 RRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS-IEGISKKIACKIYN 605
            R+K    S LD+I GIG  RK  LL  FG+V+ I ++SP+ +A  + G+ +K A  I  
Sbjct: 422 LRRKQVANSLLDDIPGIGKKRKMTLLNHFGSVREIRKASPQDIAEAVPGLGEKSAHMILE 481

Query: 606 HFHKN 610
           +  KN
Sbjct: 482 YLKKN 486



 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 4/242 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH---THRITHMISQINNIR 59
             ++   PGVY   D   +V+YVGKA +L+KR+ +Y  ++       ++  +I+ I    
Sbjct: 9   PRKISSDPGVYVFRDRFAKVIYVGKAKSLRKRLATYFQASRLATADPKLRSLINSIAFYE 68

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG 119
                +E EALLLE+  IK   P +NIL+RDDK+F  + +T     P +   R       
Sbjct: 69  TYEVKSESEALLLESRFIKEYSPHYNILMRDDKNFYLVKVTINEPYPRILLTRVRKDDGA 128

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSE 178
           +YFGPF    A+  T+  L R F LR+C   +     R  C    ++ CS PC   ++ E
Sbjct: 129 AYFGPFPCSSAIRSTVEFLTRYFKLRTCTSRIPDLSDRKHCKEQILRNCSAPCDQSVTQE 188

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y E V +  K L G   ++ +++   M     K  +E A  +RD +  L          
Sbjct: 189 QYRESVGDMIKVLEGQIADIVDELNEAMQNYVEKLQFEKAATYRDIITNLKSALKQRRKF 248

Query: 239 YN 240
            N
Sbjct: 249 VN 250


>gi|320103466|ref|YP_004179057.1| excinuclease ABC subunit C domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319750748|gb|ADV62508.1| excinuclease ABC C subunit domain protein [Isosphaera pallida ATCC
           43644]
          Length = 550

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 116/251 (46%), Gaps = 6/251 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTVT 63
             P  PGVY M D  GRV+Y+GKA NL+ R+ SY         RI   I ++  + +   
Sbjct: 127 DFPTGPGVYLMKDARGRVVYIGKAKNLRSRVGSYFQKAAEGDPRIRDWIGEVAQVDYLEA 186

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             EV+A+L+EA +IK ++PR N  L+DDKSFPY+ IT     P +   R  +      +G
Sbjct: 187 KGEVDAMLMEARLIKDIQPRHNKELKDDKSFPYLQITTHEDFPRVNFTRSPAAKGVKLYG 246

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----TRPCLLFQIKRCSGPCTGEISSE 178
           PF     +   I  LQ+ F  R+C+  +  +       RPCLL  I++CS PC   I   
Sbjct: 247 PFPRAGQLRGAIRLLQQVFQFRTCSLDIRENDPRWRWFRPCLLHAIRQCSAPCNLRIDKA 306

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E +   K  L G    +  ++   M +A     +E A   RD L AL ++    D  
Sbjct: 307 SYREDIRRLKLVLDGKLDEVVAELQAEMKEAGRNLLFEKAARIRDTLKALQNLNLRGDLN 366

Query: 239 YNRMDCFSLYH 249
            +         
Sbjct: 367 THAQPEVFHID 377



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 100/243 (41%), Gaps = 24/243 (9%)

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK 372
            L             +     +   + +    L     +H Q     I  +  L    K 
Sbjct: 329 ELQAEMKEAGRNLLFEKAARIRDTLKALQNLNLRGDLNTHAQPEVFHIDPKRGLIGLRKV 388

Query: 373 FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMR 432
             L   P+RI+  D +H+ G   VG +V   +    K  YR++ +    VK  DD A +R
Sbjct: 389 LELDRTPRRIDGVDIAHLGGDQTVGSLVTFVDGLPFKPGYRRYRI--QSVKGIDDYASIR 446

Query: 433 MVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRI 492
            V+ RR   L + EE               +PD+ ++DGGKGQL+AA    + L+ E   
Sbjct: 447 EVVSRRILGLREREE--------------PFPDIFLIDGGKGQLNAALAAFRALD-EPPP 491

Query: 493 TIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
           T+IS+AK        E      + E L+L+ R   L  +Q +RDEAHRFA   H   R K
Sbjct: 492 TLISLAKRE------EIIHRPGEAEPLILSRRSFALRLLQSVRDEAHRFAQHYHHLLRGK 545

Query: 552 AAY 554
              
Sbjct: 546 KLR 548


>gi|322411941|gb|EFY02849.1| excinuclease ABC subunit C [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 304

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 151/317 (47%), Gaps = 32/317 (10%)

Query: 296 DKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RS 351
               P+ + + E  +E  +  I   K          PK+GEK++++  A  NA     + 
Sbjct: 9   QHFIPKEVFIPEAIDEELVAAIVPTKIIK-------PKRGEKKQLVALATKNARVSLQQK 61

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
                         + +      +     RIE +DNS+I G S V  MVV  +    K  
Sbjct: 62  FDLLEKDIKKTSGAIDNLGHLLGIDKPV-RIEAFDNSNIQGTSPVAAMVVFLDGKPNKKD 120

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDG 471
           YRKF +    V  QDD A MR V+ RR+S++                     PD++I+DG
Sbjct: 121 YRKFKIKT--VVGQDDYASMREVIFRRYSRVKHEG--------------LVAPDLIIIDG 164

Query: 472 GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQ 531
           G GQ++AA+ V++   +   I I  + K  K     E  F K  E + L       + + 
Sbjct: 165 GLGQVNAAREVIED-RLGLTIPIAGLQKNDKHQT-HELLFGKPLEVVPLPRNSEEFFLLH 222

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           R++DE HRFAIT HR+ R K ++S  LD+I G+GP RK++LL+ F T+  I+ +SP+ + 
Sbjct: 223 RIQDEVHRFAITFHRQVRSKNSFSSKLDKIPGLGPKRKQILLKHFKTMTAIAAASPDEIH 282

Query: 591 SIEGISKKIACKIYNHF 607
           S+ GI + +A  ++ H 
Sbjct: 283 SL-GIPRAVASAVHQHL 298


>gi|330752514|emb|CBL87462.1| UvrABC system protein C [uncultured Sphingobacteria bacterium]
          Length = 242

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 92/267 (34%), Positives = 135/267 (50%), Gaps = 26/267 (9%)

Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402
               N      +  +        L+   K   L  +PK IE +DNS+I G + V   VV 
Sbjct: 1   MMKKNLMEHKFKSKTKVNQDH--LEQIQKDLRLTSLPKHIECFDNSNIQGSNPVASCVVF 58

Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462
                 K+ YR FN+    V   DD A MR +++RR++  IK  E L             
Sbjct: 59  INGRPAKSAYRHFNVKT--VDGPDDYASMREIVKRRYTGQIKKGEAL------------- 103

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
            PD++++DGGKGQL+AA   LK++ +   + +I IAK  +     E F+      L+LN 
Sbjct: 104 -PDLIVIDGGKGQLNAAVEALKEVGIYQEVAVIGIAKQLE-----ELFYPNDPLPLMLNK 157

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
           R P L  IQ++R+EAHRFAIT HRK+R +    + L+ I+GIG      LL+SFG+V+ I
Sbjct: 158 RSPALKLIQQIRNEAHRFAITFHRKKRSQHFTRTSLEVIDGIGEKTAIQLLRSFGSVEAI 217

Query: 582 SRSSPETLASIEGISKKIACKIYNHFH 608
             ++ E +A +  I +K A  I    H
Sbjct: 218 RNATMEDIALV--IGQKKAQLIKAGLH 242


>gi|189485476|ref|YP_001956417.1| excinuclease ABC subunit C [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287435|dbj|BAG13956.1| excinuclease ABC subunit C [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 432

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 127/252 (50%), Gaps = 7/252 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E +P+ PGVY M D  G ++Y+GKA +L+ R+ SY +++ ++ +   +I+ +  I + 
Sbjct: 8   KLENIPKLPGVYIMRDGVGSIIYIGKAKSLKNRVSSYFNADINS-KAASIITAMRKIDYI 66

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +  +E EAL++E  +I +++P FN + +DDKS+PYI  +     P L   R        Y
Sbjct: 67  LCTSEREALIIERQLINKVQPYFNSMWKDDKSYPYIKFSIDEDFPRLALTRKKLKDGALY 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS------VFRHRTRPCLLFQIKRCSGPCTGEI 175
           FGP+  V  ++K +  L + F +R C             + + CL +  + C+GPC G+I
Sbjct: 127 FGPYPQVFYIKKFVRWLVKLFKIRPCKMDLSEESLPEEKKVKSCLYYHTEMCTGPCLGKI 186

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
            S+ Y + + + + FL+G    L++     M   +    YE A   RDRL AL ++    
Sbjct: 187 MSKDYKKKIKDIELFLNGKFKKLEDDWKTQMFDLSENMRYEEAKEIRDRLYALQNMSERV 246

Query: 236 DSIYNRMDCFSL 247
                  D  + 
Sbjct: 247 IISEITQDEINN 258



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 28/247 (11%)

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI-----SHQM 364
           +   L +    + +     +   +  E R  +      + R    +++ +          
Sbjct: 205 KFKKLEDDWKTQMFDLSENMRYEEAKEIRDRLYALQNMSERVIISEITQDEINNSVKRAN 264

Query: 365 ILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKT 424
            + +      L H P  IE +DNS+I G +AV  MV        K  YR+F +    V  
Sbjct: 265 SINELKNVLRLKHQPAVIEGFDNSNIQGTNAVASMVRFQNGIADKKNYRRFKIKT--VAG 322

Query: 425 QDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLK 484
            DD A M+ V+ RR+S LI+  E L              PD++++DGGKGQL AA   L+
Sbjct: 323 ADDFASMKEVVFRRYSSLIRKNEKL--------------PDLILIDGGKGQLGAAVSALE 368

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
           +L  +++I IIS+AK  +     E F   K  A++L+     L  +Q +RDEAHRFA++ 
Sbjct: 369 EL--QSQIPIISLAKKNE-----EIFLPSKDSAMLLSRHSAALRLLQSVRDEAHRFAVSY 421

Query: 545 HRKRRKK 551
           HRK R K
Sbjct: 422 HRKLRAK 428


>gi|221632241|ref|YP_002521462.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM
           5159]
 gi|221156344|gb|ACM05471.1| DNA polymerase III, epsilon subunit [Thermomicrobium roseum DSM
           5159]
          Length = 693

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVTCT 65
           PE PGVY M D  GRVLYVGKA NL++R++SY      +T ++  ++  +  I   VT +
Sbjct: 290 PELPGVYLMRDALGRVLYVGKARNLRQRVRSYFSQPLGYTRKMDGLLESVAEIETVVTGS 349

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E+EALLLE+  ++R KP +N  LR+ +++PY+ +      P L   R        Y GPF
Sbjct: 350 ELEALLLESQFVQRYKPPYNTQLRNHEAYPYVKVELGRPWPRLMLARQRDDDDAVYVGPF 409

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVF--RHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
            S  A    +  L +   LR+C  S    R   RPCL   + RC GPCTG ++ ++Y   
Sbjct: 410 RSTAAARSVVELLHQLLPLRTCHRSFRDARSYGRPCLQLTLGRCIGPCTGCVTPDEYRAL 469

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223
           V  A ++LSG    + E+  + +  A  + D+E A   RD
Sbjct: 470 VDCALRYLSGETSVVVERAQQLLADAVERLDFERAARLRD 509


>gi|171910789|ref|ZP_02926259.1| excinuclease ABC subunit C [Verrucomicrobium spinosum DSM 4136]
          Length = 530

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 4/230 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH---RITHMISQINNIRFT 61
            +P  PG+Y M D   RV+YVGKA +L+KR+ SY   +       +   +I  I +    
Sbjct: 16  DVPHLPGIYVMRDRLNRVIYVGKARDLRKRLSSYFMPSRARKADLKTRALIDSIWDFETQ 75

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +   E EALLLE  +IK  +P++NI  RDDK F  + +      P     R        Y
Sbjct: 76  LVRNEPEALLLEGRLIKDFRPKYNISFRDDKRFLLVKVQMAEPFPRFTLTRLKKDDGARY 135

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCAD-SVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           FGPFA   A+  T+N + R F LR C   +      + C    IK+CS PC G ++ E+Y
Sbjct: 136 FGPFAHSGALRTTLNWMNREFGLRVCRPLNPDEDDYKHCNNDIIKKCSAPCIGRVTQEEY 195

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
              +  A +FL G + +L   +   M +A  + D+E A   RD +     
Sbjct: 196 RARIDRACEFLEGKSRDLVTALEEEMKKAAARLDFEKAAELRDMIEDFKK 245



 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 30/283 (10%)

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
            R    ++S+ I     + +  +   L   P  +E +D ++I     V  MV        
Sbjct: 254 ERGARTRISSTIDPMRDVAELQEYLGLEEPPLVMECFDIANIGTAHCVASMVRFKNGAPD 313

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL------------------- 449
              YR++ +    V  Q+D A M  V+ RR+S+++                         
Sbjct: 314 NANYRRYRIRI--VSGQNDFAAMSEVVRRRYSRILLEGRAALGEDAADVSQENPLEAMRR 371

Query: 450 --NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
                PK     F + P+++I+DGGKGQLS+A   L++L +   + II +AK  +     
Sbjct: 372 LEEEKPKGVGPKFVTLPNLIIVDGGKGQLSSATKELQRLGLH-EVPIIGLAKENE----- 425

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPL 566
           E +     + L++      L  +QR+RDEAHR+A   H+    +    S LD+  G+   
Sbjct: 426 EVYRPDVEQPLLIPHDRGALKLLQRIRDEAHRWANGYHQLLLGRRVEESILDDCPGVSQT 485

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           RK  LL+ FG+V  + +++ E +A ++GI K +A +I     +
Sbjct: 486 RKANLLRHFGSVTRLRKATVEEIAKVQGIGKGLAEEIERFLRE 528


>gi|254707070|ref|ZP_05168898.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10]
          Length = 156

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 82/154 (53%), Positives = 110/154 (71%), Gaps = 1/154 (0%)

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
              +FP+WPDV+++DGG+GQ+ A + +L ++ + + +T I IAKG  R AG E+FF++  
Sbjct: 1   NPDAFPAWPDVILIDGGQGQVGAVRQILGEMGISDLVTAIGIAKGVDREAGRERFFMEGK 60

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQS 574
           +   L  RDP+LYFIQRLRDEAHRFAI THR RRKK    +PLDEI GIGP RKR LL  
Sbjct: 61  QPFTLPPRDPVLYFIQRLRDEAHRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHH 120

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           FGT K +SR++ E L  I+GIS+ +A  I++HF 
Sbjct: 121 FGTAKAVSRAAVEDLMQIDGISEAMARAIHDHFR 154


>gi|94270461|ref|ZP_01291750.1| Helix-hairpin-helix motif [delta proteobacterium MLMS-1]
 gi|93450790|gb|EAT01838.1| Helix-hairpin-helix motif [delta proteobacterium MLMS-1]
          Length = 303

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 20/279 (7%)

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIM 391
           P++G+K+ ++  A  NA +   +    E   + +     +   L   P R+E  D S++ 
Sbjct: 41  PRRGDKKALVGMAHDNAAQVLAEHGRQEQQWEQLATAIQQAMQLVQPPTRLECLDISNLG 100

Query: 392 GCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNF 451
           G  AVG ++          +YR+F +   D    DD AMMR VL R  S+  + +   + 
Sbjct: 101 GQQAVGSLISFNSGVKEPGRYRRFKIRTRDTP--DDYAMMREVLWRHLSRGWQQQSLPDL 158

Query: 452 HPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVE-NRITIISIAKGPKRSAGMEKF 510
                                 GQL  AQ V+ +L +  ++  + +IAK  +   G   F
Sbjct: 159 LLLDGGK---------------GQLGVAQAVVAELGLAADKPALAAIAKERE-GEGERIF 202

Query: 511 FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKR 569
              +   L L    P+L F+ RLRDEAHRF IT HRK R  +   S LD I G+GP RK 
Sbjct: 203 LPGRKNPLKLAPNSPVLLFMMRLRDEAHRFGITHHRKLRSQQQLASGLDRIPGVGPARKA 262

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            LL++ G+++ +  +S   LA++ GI  ++A  I++H  
Sbjct: 263 ALLKTLGSLEAVRGASRAELAAVSGIGPELAAVIHDHLR 301


>gi|148927598|ref|ZP_01811067.1| excinuclease ABC, C subunit domain protein [candidate division TM7
           genomosp. GTL1]
 gi|147887056|gb|EDK72555.1| excinuclease ABC, C subunit domain protein [candidate division TM7
           genomosp. GTL1]
          Length = 440

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 5/234 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60
             + +P  PGVY   D  G+++YVGKA  L+ R++ Y   N  H  +   ++++I +  +
Sbjct: 11  KLKTLPRSPGVYFHKDARGKIIYVGKAAILKNRVRQYFQKNRPHDIKTEALVAEIADTDW 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           T   TE++AL LE+ MIKR KPR+N+LL DDKS  ++ I  +   P +   R        
Sbjct: 71  TTVETEIDALFLESEMIKRYKPRYNVLLCDDKSQLFVRINMQDVYPYVSFTRWPQDDSAE 130

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GP+ +  AV+K +  L+R F   +          R CL + +  C G    +ISS  Y
Sbjct: 131 YYGPYYNGWAVKKALRYLRRAFPYSTHETMP----KRVCLQYHLGLCPGVEEQKISSADY 186

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
              + +  ++L G    L   I + M  A  ++DYE A   R++L  L  +   
Sbjct: 187 KVTLRKLIRYLKGERKALVRDIEQEMKTAAARKDYELAAKKRNQLRDLKELGRQ 240



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 87/214 (40%), Gaps = 29/214 (13%)

Query: 313 SLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKK 372
            + +           ++   K+ + R + E          + +   +IS    L    + 
Sbjct: 207 DIEQEMKTAAARKDYELAAKKRNQLRDLKELGR---QVIFSDREFLDISKDEALVGLQQL 263

Query: 373 FALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMR 432
             L  IP RIE YD SH+ G + V  MVV       K QYRKF +    +   +D A M 
Sbjct: 264 LGLKKIPYRIEGYDISHMSGTNNVASMVVATNGLADKAQYRKFKM---QLPGNNDFAHMH 320

Query: 433 MVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRI 492
            V+ RRFS                 ++    PD++++DGGKGQL AA   L++  V   I
Sbjct: 321 EVISRRFS---------------GRHTSWPTPDLLLIDGGKGQLQAALKALEEKGVS--I 363

Query: 493 TIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDP 525
             + +AK  +     E   VK+      L+ R P
Sbjct: 364 PAVGLAKRLE-----EIIVVKEPLTEASLSSRSP 392


>gi|193213751|ref|YP_001994950.1| hypothetical protein Ctha_0031 [Chloroherpeton thalassium ATCC
           35110]
 gi|193087228|gb|ACF12503.1| DNA polymerase III, epsilon subunit [Chloroherpeton thalassium ATCC
           35110]
          Length = 578

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 85/345 (24%), Positives = 152/345 (44%), Gaps = 5/345 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVT 63
           + P   GVY M      VLY+GK+ NL+ R+ SY + N + + ++  +   +  I +T+T
Sbjct: 227 KFPTKSGVYLMKSAKDEVLYIGKSKNLKSRVSSYFNQNIDRSEKVVELTHHVRKIDYTLT 286

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+EALLLE+ +IK+ KPRFN LL+  +S+P++  + +H+ P L    D       YFG
Sbjct: 287 GSELEALLLESKLIKQYKPRFNTLLKRYRSYPFLTFS-EHEFPKLEIALDVEDGDKEYFG 345

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC-TGEISSEKYME 182
           PF S++ ++  +  L+R F +R C+D  F  R R C+ F + RC  PC   +   E Y++
Sbjct: 346 PFPSLELLQHVVEILERYFKVRKCSDHDF-SRARFCIYFDLDRCFAPCKHPKHYKEAYIK 404

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH-IQNHNDSIYNR 241
            + + + FLSG N  +   + R M     +  +E A   + ++ +L       +D + + 
Sbjct: 405 ELDQIRAFLSGKNPEIINVMIREMKALASENLFEEAADLKQKIHSLQKVFFRQSDIVNSV 464

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
            +   +    +      C  +            +        + L   +   Y +     
Sbjct: 465 NENNVIAILPSENFSDCCKEYVLLFVRFGRLIDQKKVFEDETESLVPVIASVYHNGHSSP 524

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
                EE +E  +L    ++         V       +I E    
Sbjct: 525 TPCRKEEIDEMQILSNWIYQNKDSLHCFYVKDALTTEQIHETLQK 569


>gi|255605151|ref|XP_002538349.1| conserved hypothetical protein [Ricinus communis]
 gi|223512620|gb|EEF24033.1| conserved hypothetical protein [Ricinus communis]
          Length = 171

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 82/180 (45%), Positives = 120/180 (66%), Gaps = 11/180 (6%)

Query: 431 MRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVEN 490
           M+ VL+RRFS+L+K E+  +   +         PD+V++DGGKGQL AA  ++  L V++
Sbjct: 1   MKEVLKRRFSRLVKEEKEGDDANR---------PDLVLVDGGKGQLDAALEIMADLGVDD 51

Query: 491 RITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550
            IT+I +AKGP R AG+E+FF+      +L  + P+LY++QRLRDEAHRFAI  HR RR 
Sbjct: 52  -ITVIGVAKGPDRDAGLERFFIPGQTPFMLEPKSPVLYYLQRLRDEAHRFAIGAHRTRRS 110

Query: 551 -KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
                +PLDEI G+GP RK+ LL +FG+ K + R+S E L  ++G+S+ +A +I+  F K
Sbjct: 111 MDLKKNPLDEIEGVGPGRKKALLHAFGSAKGVGRASVEDLVKVDGVSQALAERIHAFFRK 170


>gi|288574957|ref|ZP_06393314.1| excinuclease ABC, C subunit [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570698|gb|EFC92255.1| excinuclease ABC, C subunit [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 489

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 6/242 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--SNNHTHRITHMISQINNIRFTV 62
             P  PGVY M D  G ++YVGKA +L+KR+ SY    S   + R+  +++ I +I    
Sbjct: 14  TFPNRPGVYLMHDSDGEIIYVGKAKSLKKRVSSYFRHASGYASSRLRKLVASIEDISTIR 73

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL++E+ +IK++ P FN+ L+ ++ +PY+ +T     P L         +G + 
Sbjct: 74  TETEAEALIVESRLIKKIMPFFNVDLKMNERYPYVYVT-DDDFPRLEVT--LRKGEGLHI 130

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181
           GP+ S   + + +  ++R F LR+C     +   TRPCL   + +C  PC G  S  +Y 
Sbjct: 131 GPYVSAGELRRVLRLIERYFPLRTCRHDFSKVHLTRPCLRHSLGKCLAPCVGLCSKGEYG 190

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + + +    L G    + +++ + M++   +  +E A   RD L AL        S    
Sbjct: 191 DVLDDVVLLLRGQTLEVTDRLRKRMDRRAREMRFEEAARLRDTLRALWRFSRQKVSATLS 250

Query: 242 MD 243
            D
Sbjct: 251 AD 252



 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 24/250 (9%)

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           +     +L D  +   LP +P RI+ +D SH  G    G +VV  +     + YR+F + 
Sbjct: 254 DEDTWQVLCDLQEIVGLPTVPWRIDGFDISHSSGHETYGVVVVFEQGLPNPSLYRRFGIR 313

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
              V+  DD   M+  + RR+ + ++ E                 P ++++DGG  QL  
Sbjct: 314 E--VQGIDDFRSMKETVTRRYRKCLEGE--------------APLPQLILIDGGPEQLRF 357

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
           A   L +L +   I ++S+AK  +       F +   E + L   DP L  +QR+RDE+H
Sbjct: 358 ASEALSELGLS--IPVMSLAKREEL-----VFTLDSEEPIELERNDPALRLLQRVRDESH 410

Query: 539 RFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           R+AITTHR +R+ +   S L+EI GIG  R   LL  FG+V+ I+R     L  + GI +
Sbjct: 411 RYAITTHRGKRQERLRRSALEEIPGIGKRRAAALLARFGSVQQIARLGESALMEVPGIGE 470

Query: 598 KIACKIYNHF 607
             A  I  H 
Sbjct: 471 SHARNILRHL 480


>gi|196228132|ref|ZP_03126999.1| excinuclease ABC C subunit domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196227535|gb|EDY22038.1| excinuclease ABC C subunit domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 627

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 110/241 (45%), Gaps = 7/241 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH---THRITHMISQINNIRFT 61
            +P  PGVY M D   RV+YVGKA NL+KR+  Y   +       +   ++  I +  + 
Sbjct: 16  DVPHKPGVYLMRDRFHRVIYVGKARNLRKRVGQYFTPSRAMRADLKTRALLDAIWDFEWH 75

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +  +E EALLLE  +IK  +PR+NI  RDDK F  + +  + + P     R  +     Y
Sbjct: 76  LVGSEPEALLLEGRLIKEFRPRYNISFRDDKRFLLVKVDMREEWPRFRLTRMKNDESAKY 135

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPFA   A+ +T+  +++ F + +        R      +Q+       T     E+Y 
Sbjct: 136 FGPFAHAGALRQTLAFMRKKFGVLTFGRGNPSERELKSSTYQVPMKLADTT----MEQYR 191

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           E V  A +FL+G +  L E + + M +A    D+E A   R+ L  L             
Sbjct: 192 ERVDRACEFLAGQSKELLEALEQEMKKAAAALDFEKAAELRNMLDDLRKTTKPMARYTRD 251

Query: 242 M 242
           M
Sbjct: 252 M 252



 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 112/267 (41%), Gaps = 60/267 (22%)

Query: 366 LKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ 425
           L        L   P+R+E +D S+I     V  MV   +       YR+F +    V+ Q
Sbjct: 268 LAALGDALGLGGPPRRMECFDISNISTTHIVASMVCFVDGRPANYLYRRFRIKT--VEGQ 325

Query: 426 DDCAMMRMVLERRFSQLIKN-------------------------------EENLNFHPK 454
           DD A M  V+ RR+++++                                 +       +
Sbjct: 326 DDFASMGEVVRRRYTRVLHEAAVGASRAPSSKAESEEHIDYAPQFSQEKLRDAVARVGDE 385

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
            +    P  P ++I+DGGKGQLSAA   L++L +E  + II +AK  +     E +   +
Sbjct: 386 PETPGVPRLPSLIIVDGGKGQLSAACRELQRLRLE-EVPIIGLAKEFE-----EIYRPGR 439

Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRK-----------RRKKAAYSPLDEINGI 563
            + L L      L  +QR+RDEA                     +R + A S LD+  G+
Sbjct: 440 PQPLQLPHDSGALQLLQRIRDEA---------APLCQWLSPVLMKR-RIAESILDDCPGV 489

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLA 590
              RK+LLLQ FG+V  + R++ E +A
Sbjct: 490 SQHRKQLLLQKFGSVARLRRATAEQIA 516


>gi|255523097|ref|ZP_05390069.1| Excinuclease ABC C subunit domain protein [Clostridium
           carboxidivorans P7]
 gi|255513212|gb|EET89480.1| Excinuclease ABC C subunit domain protein [Clostridium
           carboxidivorans P7]
          Length = 366

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 71/321 (22%), Positives = 145/321 (45%), Gaps = 7/321 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGK+ NL+ R+ SY  +S +H+ ++  ++  + +  +
Sbjct: 6   KVKKLPFSPGVYLMKDSLDTIIYVGKSKNLRNRVGSYFINSKSHSPKVIKLVKNLKDFDY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQG 119
            +T TE EALLLE  +I+ +KP +N  +++ K + YI I    K P +    +++     
Sbjct: 66  ILTDTEFEALLLECKLIREIKPIYNRQMKNTKGYCYIKINMNEKYPDIEIVSETNNSDGN 125

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGP+ + + +EK +  ++    +     +    +   C+ +    C G CT     + 
Sbjct: 126 LYFGPYTNKNTIEKGLYGIKEHSKIL---CTNSSRKASGCIKYSRNLCIGMCTANPPKKH 182

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   V +  K L+G +  + E++ + MN A    D+E A  +RD + A+ H+ +    I 
Sbjct: 183 YFALVEKVIKLLNGTDFTILEEMDQEMNNAAENFDFERAAKYRDYIRAIKHLISTAKIIA 242

Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                 ++   + L   +  FF   + +   +  + +           L   +  ++ + 
Sbjct: 243 FTEANKNIALVEFLNDKEIKFFLIRYNKVIFSEKYKISDFGVDEIKNKLKSNIISYFGNA 302

Query: 298 PCPENILLSEEAEETSLLEIS 318
                 +   E +E  ++   
Sbjct: 303 LKTSVNIGKNEIDEAHIIYNY 323


>gi|298710910|emb|CBJ49263.1| excinuclease ABC subunit C [Ectocarpus siliculosus]
          Length = 890

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 22/243 (9%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH---------------SNNHTHRITHM 51
           P+ PG Y      GR LY+GK+ NL  R++SY                   + + RI  M
Sbjct: 26  PDEPGCYIFESGDGRKLYIGKSVNLSSRVQSYFSSSSSAGNGAEHAVRPGRSLSRRIAVM 85

Query: 52  ISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYK 110
              +  I + VT +  EALLLEA++I++ +P FN+LL+DDK  +PY+ +T     P +  
Sbjct: 86  TDLVERIDYIVTASGAEALLLEASLIRQHQPPFNVLLKDDKQNYPYVCVTWSEPYPRVLI 145

Query: 111 HRDSSTIQG----SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKR 166
            RD     G     Y+GPF     V+ T+  ++R   LR  A  ++  + +PCL + +  
Sbjct: 146 TRDKPRRGGGSEDRYYGPFVDAGQVKSTVALVRRVLPLRERARPLY--KDKPCLNYDMGI 203

Query: 167 CSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226
           C GPC G +S E Y E V  A+    G    L   +   M   +  E +E A   + ++ 
Sbjct: 204 CPGPCQGLVSEEDYAETVRLAEMVFRGEGSQLLSTLQGRMESESRAERFERAGEIKAQMT 263

Query: 227 ALS 229
            + 
Sbjct: 264 LVR 266



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 30/144 (20%)

Query: 487 NVENRITIISIAKGPKRSAGMEKFFVKKGEALV--LN--MRDPILYFIQRLRDEAHRFAI 542
               R+T +S+AK  +     E +     E L   L      P +  ++++RDEAHRFA+
Sbjct: 752 GGGRRVTFVSLAKKEE-----EVYVPGSSEPLAAALEAGPSSPGVMVLRQVRDEAHRFAV 806

Query: 543 TTHRKRRKKAAY-------------SP--------LDEINGIGPLRKRLLLQSFGTVKMI 581
             HRK R    +             S            I G+    +  L  +FG+++  
Sbjct: 807 AYHRKLRGNDMFLPGRGTVATEETDSVNGGGGQQDFAAIAGLSSKARHELTITFGSLEGA 866

Query: 582 SRSSPETLASIEGISKKIACKIYN 605
             +    L  I GI   +A +I  
Sbjct: 867 RIAGEAELRRIPGIGPVLAKRILA 890



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 335 GEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCS 394
           GE+  +   AL NA     + L    S    L    +   L   P RIE YD SH  G +
Sbjct: 497 GERHHLCVMALKNAELEAKRLLRGGESIARGLSQLARMLGLGSNPARIEGYDVSHTGGGN 556

Query: 395 AVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD--DCAMMRMVLERRFSQLIKNEENLNFH 452
           AV  +V   +       +R++ +    ++     D A +R V+ RRFS         +  
Sbjct: 557 AVASLVCFLDGKASPKDHRRYRIRSPGIRKGHSDDYASLREVIARRFS-----PPTPSLR 611

Query: 453 PKKQEYSFPSWPDVVILDGGKGQL 476
             +        P++V++DGGKGQL
Sbjct: 612 SPRPPSQANPVPELVLIDGGKGQL 635


>gi|150019333|ref|YP_001311587.1| excinuclease ABC subunit C [Clostridium beijerinckii NCIMB 8052]
 gi|149905798|gb|ABR36631.1| Excinuclease ABC, C subunit domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 366

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 79/349 (22%), Positives = 161/349 (46%), Gaps = 6/349 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             +++P  PGVY M D    V+YVGK+ NL+ R+ SY  +S +H+ +I  ++  + +  +
Sbjct: 8   KVKKLPSSPGVYLMKDSLNNVIYVGKSKNLKSRVGSYFINSKSHSPKILKLVQNLKDFEY 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK-HRDSSTIQG 119
            +T TE EA LLE  +IK++KP +N L+++ KS+ YI I    K P +   H  + T   
Sbjct: 68  KITDTEFEAFLLECELIKKIKPAYNRLMKNPKSYSYIKIVLNEKYPNIEISHESNETDGN 127

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGP++  +  EK +  ++    ++    S+ + +T  C  + +  C G C      E+
Sbjct: 128 IYFGPYSRKNIAEKGLYGIKEYCKIQ---CSINQRKTSSCFNYSLGLCIGMCLDTTPREE 184

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y+  +++    L+G +  + +++   MN A+ K D+E+A  +RD +++++++      I 
Sbjct: 185 YLNILNKIINLLNGNDKIILQEMEHIMNSASEKFDFETAAKYRDYISSVNYLLEKIKIIK 244

Query: 240 NRMDCFSLYHNKN-LACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
                 ++   +         F   G        ++  + +    + +      FY +  
Sbjct: 245 FTKKNRNIALLEYLDNDRVKFFLIRGNKILFSEKYILKNFDLEAFKGILKDNILFYFNNG 304

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
                +  EE +E+ ++      +      I +P++          + N
Sbjct: 305 DVPIEIGKEEIDESQIIYTYLKNKSNSCKHIIIPEEWLSVPNNYINIHN 353


>gi|240047734|ref|YP_002961122.1| Excinuclease ABC subunit C [Mycoplasma conjunctivae HRC/581]
 gi|239985306|emb|CAT05319.1| Excinuclease ABC subunit C [Mycoplasma conjunctivae]
          Length = 514

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 104/561 (18%), Positives = 201/561 (35%), Gaps = 64/561 (11%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+  GVY+  D   R+LYVGK+ N+ +RI  Y   + ++++   ++ +  +I++T+  
Sbjct: 12  NLPKQAGVYRFYDDQKRLLYVGKSKNIYERIHQYATGSINSYKTGKLLQETVDIQYTIVA 71

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF-- 122
            E EAL+LE  +I   +P++NI L+DDK +PYI I   +K+ ++            YF  
Sbjct: 72  NETEALVLEKRLISLYQPKYNIELKDDKGYPYIQIRKDNKLISIDIVYKIKR-GHKYFSY 130

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF    A  +    L+        A   F ++ +    F + +        I+  +   
Sbjct: 131 GPFLKRSAAFEIKKLLESELLYEKGAKITFENQEQVDDAFNLSKDILQKRKWINYYEQKM 190

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
                                            +        L  ++H   + D   +  
Sbjct: 191 NFAIENMQYE---------------------IAQKYFESITVLKQMAHQYQNVDLNSDEN 229

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPEN 302
             F  + +     +   F  +             D   +    ++ F+  +Y +   P+ 
Sbjct: 230 LDFMYFDSVGKNNLVITFLFYRNGYMLSHRTFFVDILFSLENTITSFVNNYYKNNFLPQY 289

Query: 303 ILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN----AHRSHTQKLST 358
           + ++            F     + + I + +     +I+E A IN      +    KL  
Sbjct: 290 VFVT------EESSRFFENHLDFHIPIKIARSKSHLQILENAKINNNDFIKKDLRIKLEQ 343

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLH 418
           E +   ILK    +  L      I + DNSHI        ++        K   R FN  
Sbjct: 344 ENNLNNILKQMRYELNLEKND-IILLIDNSHIANQLPTTGVIYFLNGLHSKKYNRFFNYT 402

Query: 419 PNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSA 478
            +    + D   +   L++ FS                       PDV+ +DGG  Q++ 
Sbjct: 403 GS---KKGDVNYLEQGLKKHFS-----------------VKNALIPDVIFVDGGIAQINT 442

Query: 479 AQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAH 538
            + +L   ++  +I +  + K  +     +    K G  L ++    +   I  +++E  
Sbjct: 443 VETILLAKSL--KIPLFGLVKNSRHKT--DHILDKFGNKLEISQN--VFNLIANMQEEVD 496

Query: 539 RFAITTHRKRRKKAAYSPLDE 559
            F+ +   K R K     L +
Sbjct: 497 IFSKS---KLRNKIIKKILTQ 514


>gi|254672091|emb|CBA04766.1| hypothetical protein NMW_0307 [Neisseria meningitidis alpha275]
          Length = 141

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/143 (46%), Positives = 91/143 (63%), Gaps = 4/143 (2%)

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK-KGEALVLNMRDPI 526
           ++DGGKGQ+  A  V ++L +   I ++ IAKGP+R AGME+  +   GE   L    P 
Sbjct: 1   MIDGGKGQIGVAVSVWEELGLH--IPLVGIAKGPERKAGMEELILPFTGEIFRLPPNSPA 58

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           L+ +Q +RDE+HRFAIT HRK+R KA   S L EI GIG  R++ LL  FG ++ +  +S
Sbjct: 59  LHLLQTVRDESHRFAITGHRKKRDKARVTSSLSEIPGIGSKRRQALLTRFGGLRGVIAAS 118

Query: 586 PETLASIEGISKKIACKIYNHFH 608
            E L  +EGISK +A  IYNH H
Sbjct: 119 REDLEKVEGISKALAETIYNHLH 141


>gi|269792621|ref|YP_003317525.1| excinuclease ABC, C subunit [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100256|gb|ACZ19243.1| excinuclease ABC, C subunit [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 479

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 120/236 (50%), Gaps = 5/236 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63
            +PE PGVY M D  G V+YVGKA  L++R+ SY    N  + R+  ++  +++I    T
Sbjct: 12  SLPERPGVYIMRDRDGNVIYVGKAKALRRRVMSYFRHGNFASPRLRKLVETVHDISVMRT 71

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EAL+LEA +I++LKP FN+ L+  + +PYI +T + + P +   R     +G + G
Sbjct: 72  ATEAEALILEARLIRQLKPFFNVELKMSERYPYIRVT-QERFPRVMVTR-VRKGEGLFIG 129

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSV-FRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           P+  V  + + +  L R F LR C+  +   +  RPC+   I +C  PC G      Y  
Sbjct: 130 PYVKVRELRELLRLLDRFFPLRKCSFPIEPPYDRRPCIYHAIGKCLAPCAGLCDEGTYRR 189

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKE-DYESAIIHRDRLAALSHIQNHNDS 237
            V EA   L G   +L E++ R M  A      +E A   RD + A+  +      
Sbjct: 190 MVAEAVMLLQGRGADLVERLKRRMEDAAYNRLAFEEAAHIRDMIRAIWRVGRQAPM 245



 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 79/277 (28%), Positives = 133/277 (48%), Gaps = 27/277 (9%)

Query: 336 EKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395
             R +I        ++   ++  E     +L    ++  LP +P RIE YD SH +G   
Sbjct: 228 HIRDMIRAIWRVGRQAPMAQVGDED-PLPMLWALQERLKLPQLPWRIEGYDISHHLGSDT 286

Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455
           VG  VV  +    K  YR++N+        DD   +  V+ RRF                
Sbjct: 287 VGSRVVFEQGRPNKALYRRYNIEGTLG---DDFRALEQVMRRRF---------------T 328

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG 515
              S    P+++++DGG+ QL  A   L  + V   + + S+AKG +     E +   + 
Sbjct: 329 GSGSGDLMPNLILIDGGRVQLEFALRALDDMGV--NVPMASLAKGEE-----EIYLPGRV 381

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP-LDEINGIGPLRKRLLLQS 574
           + L L+  D  L  +Q +RDEAHRFA+++HR RR +      L++I G+G  +   LL  
Sbjct: 382 DPLRLDRSDGALRMLQMVRDEAHRFAVSSHRDRRGRRMRRTRLEDIPGVGKAKASQLLSR 441

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           FG+V+ ++ +S + LAS+ GI +++A +I +H  +  
Sbjct: 442 FGSVRNVASASLDELASMRGIGERLAKRISDHLKEED 478


>gi|282857765|ref|ZP_06266974.1| excinuclease ABC, C subunit [Pyramidobacter piscolens W5455]
 gi|282584435|gb|EFB89794.1| excinuclease ABC, C subunit [Pyramidobacter piscolens W5455]
          Length = 575

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 126/241 (52%), Gaps = 4/241 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY M D  G+V+YVGKA  L++R+ SY +  +    R+  ++  + +I F  T
Sbjct: 16  TLPLKPGVYLMHDETGKVIYVGKAKKLKRRVSSYFNHRDFAIPRLRKLVQTVQDISFIRT 75

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE EA ++E+ +IK ++P FN+ L+    +P+I++T   K P +          G  FG
Sbjct: 76  ETESEAFIVESRLIKAIQPFFNVELKMGSRYPFIVVT-AEKFPRVLVTHTRPK-TGRVFG 133

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182
           P+ S  A+   +N ++  F  R+C+ ++ + +  RPC+++ I +C GPC G+ + ++Y E
Sbjct: 134 PYTSAGAMRSMLNMIKNFFPARNCSMNLEKEKLARPCIMYDIGKCLGPCAGKCTEKEYGE 193

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V +    LSG   +L  ++   M +   +  +E A   RD +  L        S+    
Sbjct: 194 TVDDILMLLSGQTADLVARLRPRMERLAKEMRFEEAAKARDTIRDLWKFSRQKLSVTLAD 253

Query: 243 D 243
           D
Sbjct: 254 D 254



 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 81/280 (28%), Positives = 127/280 (45%), Gaps = 27/280 (9%)

Query: 338 RKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVG 397
           R + + +      S T     +      +        LP +P RI+ +D SH  G    G
Sbjct: 237 RDLWKFSRQ--KLSVTLADDLDEDTWFAMTRLRDLCGLPVVPWRIDGFDISHSAGRETYG 294

Query: 398 CMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQE 457
             VV  +    ++ YR++ +    V+  DD   MR  + RR+  +I+             
Sbjct: 295 VAVVFEQGYPNQSLYRRYAIKT--VEGIDDFRSMRETVLRRYRGMIE------------- 339

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
            S    P ++++DGG  QL+ A+  L +  V   I  I++AK  +       F       
Sbjct: 340 -SQLPLPQLILIDGGPEQLAFARQALAE--VPVAIRTIALAKRDEL-----IFTEPDKPP 391

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFG 576
           L L+  DP L  +QR+RDE+HRFAITTHR++R  + + S L+++ GIG  +  LLL +FG
Sbjct: 392 LRLDWNDPALRLLQRVRDESHRFAITTHRRKRVSRLSRSALEDVPGIGKHKAALLLSTFG 451

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKN-TSHTP 615
           +V+ I+  S E L    GI    A KI     +      P
Sbjct: 452 SVQRIAALSAEELQKAPGIGPVQAAKILGFLTETPEPEAP 491


>gi|187250616|ref|YP_001875098.1| excinuclease ABC C subunit domain-containing protein
           [Elusimicrobium minutum Pei191]
 gi|186970776|gb|ACC97761.1| Excinuclease ABC C subunit domain protein [Elusimicrobium minutum
           Pei191]
          Length = 437

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 118/243 (48%), Gaps = 13/243 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR---ITHMISQINNIRFTV 62
           +P+ PGVY M    G VLY+GKA NL  R++ Y   +N   R   +  ++  +  I + V
Sbjct: 8   LPKSPGVYIMRSGLGEVLYIGKAKNLAARVRQYFLESNLHSRGWLLPSLLPLVAKIDYIV 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E +AL+LE+ +IK+ KP FN   +DDKS+PYI I+     P     R+     G Y+
Sbjct: 68  AASERDALVLESRLIKKYKPFFNTDGKDDKSYPYIKIS-DEDFPRGLLTRN-KKGPGEYY 125

Query: 123 GPFASVDAVEKTINS--------LQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE 174
           GP  +  A++  +          L+   +  S +  +   + R C+ F   +C  PC G+
Sbjct: 126 GPHPNAFAIKSLLRFLWTSGFAPLRPCKWNFSLSKPLDERKIRTCVYFHTGQCPAPCAGK 185

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           IS + Y + V   + F  G    +K  +A+ M  A+   DYESA  +RD L  L  +   
Sbjct: 186 ISYKDYQKIVQRFRDFAEGNFGKMKHGLAKAMKMASKNMDYESAARYRDFLNTLERMSER 245

Query: 235 NDS 237
              
Sbjct: 246 ILV 248



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 25/194 (12%)

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN-DVKTQ 425
           K   +      +P+ IE +D S + G  AVG MV   +       YR+F +         
Sbjct: 267 KRLGEVLGFAKVPRHIETFDTSGLYGRYAVGSMVCYIDGKKHHAHYRRFKIKSVLPGTGN 326

Query: 426 DDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKK 485
           DD  MM  ++ RR + L K              +  + PD++++DGGKGQL  A+   ++
Sbjct: 327 DDFLMMTEIVGRRLAALKK--------------AGGALPDLMVIDGGKGQLGMAEAAAQR 372

Query: 486 LNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
             V  ++  IS+AK  +     E F   + E++ L + DP L  +  +RDE HRF IT H
Sbjct: 373 AGV--KMKFISLAKREE-----EIFVTGRSESIKLPIGDPALNLLMEMRDEVHRFGITYH 425

Query: 546 RKRRKKAAYSPLDE 559
           R  R K     L++
Sbjct: 426 RHLRDKNL---LED 436


>gi|294055836|ref|YP_003549494.1| excinuclease ABC C subunit domain protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615169|gb|ADE55324.1| excinuclease ABC C subunit domain protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 490

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 115/254 (45%), Gaps = 5/254 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH----THRITHMISQINN 57
              ++P  PGVY M D  G+++YVGKA +L+KR+ +Y  ++        ++  MI  I++
Sbjct: 12  QLRRLPHKPGVYLMKDRLGQIIYVGKAKDLKKRVSTYFQASRKLMIAQPKVRAMIDLIHD 71

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
               +  +E EALLLE+ +IK+ KPR+N +L DDK +  + +  +  +P     R+    
Sbjct: 72  FDTILVKSEAEALLLESQLIKKHKPRYNTVLTDDKRYLLVRVDLREALPRFRLTRNRVDS 131

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFF-LRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
           Q  +FGPFA    +  T+  L+R F  L S A  +     R  L    +        E++
Sbjct: 132 QSRHFGPFAHSGHLRTTLAELRRKFGILLSDAKPIDLGNGRWRLYDDARAEIYEHPNEVT 191

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            E Y E +  A +FL G       ++   M  A    DYE A   RD + AL        
Sbjct: 192 VEDYRERMEAACEFLEGKARAWLAELKEQMLAAAEARDYEKAASVRDMIEALERTAERTR 251

Query: 237 SIYNRMDCFSLYHN 250
                +     +  
Sbjct: 252 KFERNLTGTHNHRQ 265



 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/341 (24%), Positives = 144/341 (42%), Gaps = 27/341 (7%)

Query: 271 TFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKIT 330
            + L  D+ +   +  +    + Y ++       L  E +  + L     +         
Sbjct: 172 RWRLYDDARAEIYEHPNEVTVEDYRERMEAACEFL--EGKARAWLAELKEQMLAAAEARD 229

Query: 331 VPKQGEKRKIIEQALINAHR--SHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNS 388
             K    R +IE     A R     + L+   +H+ ++K   ++  LP +P  +E +D S
Sbjct: 230 YEKAASVRDMIEALERTAERTRKFERNLTGTHNHRQVVKRLKEQLQLPSLPDHMECFDIS 289

Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN 448
           HI G   V  MV        +  YR++ +        DD   M  V+ RR+ +L    + 
Sbjct: 290 HISGSFCVASMVRFQHGRPDRRNYRRYKIKS--FVGNDDFRAMEEVVGRRYRRLHDEGKA 347

Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508
                         +PD+V++DGG GQ++AA        +E   ++I +AK  +      
Sbjct: 348 --------------FPDLVVIDGGAGQVTAALKAFLAQGLE-PPSLIGLAKKEET----- 387

Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLR 567
             F    E L L+  DP L  +Q +RDEAH FA + + + R +    S LD+  G+GP +
Sbjct: 388 IIFSDGREPLNLSHHDPALRLLQHIRDEAHHFANSFNAELRSQRLRESILDDFKGLGPTK 447

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +  LL+ FG++  + ++  E +  +EGI  K A  +     
Sbjct: 448 RMALLKHFGSLDKLRKADAEAITQVEGIGPKTAKGLVEFLQ 488


>gi|89893975|ref|YP_517462.1| hypothetical protein DSY1229 [Desulfitobacterium hafniense Y51]
 gi|219668351|ref|YP_002458786.1| excinuclease ABC C subunit domain protein [Desulfitobacterium
           hafniense DCB-2]
 gi|89333423|dbj|BAE83018.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538611|gb|ACL20350.1| Excinuclease ABC C subunit domain protein [Desulfitobacterium
           hafniense DCB-2]
          Length = 376

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/346 (24%), Positives = 150/346 (43%), Gaps = 2/346 (0%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
             + +PE PGVY M D  G ++YVGKA NL+ R+  Y +   +   ++  MI +I +  +
Sbjct: 10  KLKDLPEQPGVYLMQDSLGNIIYVGKAKNLKNRVSQYFYKQKDRDPKVEEMILRIADWEY 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            +  TE++ALL E  +IK +KP +N  +++ + + YI I      P L   ++     G 
Sbjct: 70  RIVDTELDALLEECRLIKEIKPHYNRQMKNHQKYVYIKI-PDESFPRLDIVQEREAGGGI 128

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF+S   VE  +  L   F +R C+          CL  Q+  C G CTG++SSE+Y
Sbjct: 129 YYGPFSSRHRVETAVEGLSDIFLIRKCSAPGRSKGGNGCLYRQLGTCVGVCTGKVSSEEY 188

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            E +    + +  G+    ++++  M +A    ++E A  +R+ L  L +IQ     +  
Sbjct: 189 RERLDGVCQAIEAGDKGAMKELSSRMARAVEGLNFEMAARYREYLLGLRYIQGRQKFLKG 248

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
                SL   + L   +     F                  + +     + Q   D+P  
Sbjct: 249 TYRNKSLLALEQLDTEKKTVKVFLIKGNRVVTSRVLTWLDEDLKQFLREITQALADQPGC 308

Query: 301 ENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
              L  +E +E  +L+    K     + IT     +   + +    
Sbjct: 309 SRQLTQQEVDEAQILDSYLRKDRVISIPITQKALKQGAFVEDMLKR 354


>gi|168701441|ref|ZP_02733718.1| excinuclease ABC subunit C [Gemmata obscuriglobus UQM 2246]
          Length = 448

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 117/247 (47%), Gaps = 6/247 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60
              + P   GVY M D A  V+YVGKA NL+ R  SY      +  RI   +  + ++ +
Sbjct: 22  KVREFPTSSGVYLMKDAAANVIYVGKAKNLRNRASSYFSKEAVNDPRIKDWMPLVRDVDY 81

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T   ++A+  EA MIK L+P+FN  L+DDK+FPY+ I  + + P +   R        
Sbjct: 82  IETTDAIQAVFTEARMIKDLRPKFNKDLKDDKTFPYLQIRTREEFPRVEITRKPRRKGVR 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC-----ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
            +GPF S   +   ++ LQR    R+C     +        RPCLL  I+RC+GPC   +
Sbjct: 142 LYGPFTSTKPLRIAVDVLQRLLQFRTCTLDIKSGEDRWKWFRPCLLHSIRRCTGPCNFRV 201

Query: 176 SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
           S + Y   + +    L G    L  ++ + M  A  + ++E A   RD + A+  +    
Sbjct: 202 SRDDYRAQIKKLIFILEGKTAKLVRRMEKQMRAAADELNFEKARRIRDEITAVQKLDMRG 261

Query: 236 DSIYNRM 242
           D+  +  
Sbjct: 262 DAAKDVQ 268



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 22/189 (11%)

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             L    K   L   P+ IE  D +H+ G   V  +V   +    K  YR+F +    V 
Sbjct: 278 KGLVGLRKVLGLETTPRTIEGMDIAHLSGQDTVASLVSFLDGIPFKPGYRRFKIKS--VA 335

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A MR V+ RRF +L   +E               +PD++++DGGKGQL+AA    
Sbjct: 336 GVDDFASMREVVTRRFRRLRDEDE--------------VFPDILLIDGGKGQLNAAVEAF 381

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           + L +     +IS+AK  +     E F     E++ L+     L  +Q +RDE+HRFA  
Sbjct: 382 QALGIT-PPCLISLAKQEE-----EIFRPGVEESIKLSRHSAALRLLQYVRDESHRFAQH 435

Query: 544 THRKRRKKA 552
            H   R+K 
Sbjct: 436 YHHMLRRKR 444


>gi|257484568|ref|ZP_05638609.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 166

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/181 (40%), Positives = 104/181 (57%), Gaps = 17/181 (9%)

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
              L RR+S++   E  L              PDV+++DGGKGQ+S A+ VL +L V + 
Sbjct: 1   HQALTRRYSRIKAGEGKL--------------PDVLLVDGGKGQMSMARDVLNELQVPDL 46

Query: 492 ITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK 550
           I ++ +AKG  R AG E  ++        L    P L+ IQ++RDEAHRFAIT HR RR 
Sbjct: 47  I-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQIRDEAHRFAITGHRARRG 105

Query: 551 KAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A  IY + H 
Sbjct: 106 KTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHS 165

Query: 610 N 610
            
Sbjct: 166 E 166


>gi|182412978|ref|YP_001818044.1| excinuclease ABC subunit C [Opitutus terrae PB90-1]
 gi|177840192|gb|ACB74444.1| excinuclease ABC C subunit domain protein [Opitutus terrae PB90-1]
          Length = 510

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 5/238 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT----HRITHMISQINN 57
              Q+P+ PGVY M D  GR+LYVGKA +L+KR+ SY            +I  +I  I++
Sbjct: 12  KVRQLPDKPGVYLMKDRLGRILYVGKARSLKKRVSSYFQQGRARTVMQPKIRALIPLIHD 71

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
                  +E EALLLE  +IK+ +PR+N    DDK F  + +  + ++P     R     
Sbjct: 72  FDTIEVKSEPEALLLEGKLIKQWRPRYNTDFTDDKRFLLVRVDLREELPRFRLTRLKKDD 131

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEIS 176
              YFGPFA    + KT+  ++R F +     +  +       L   +++        ++
Sbjct: 132 GSRYFGPFAHSGLLRKTLAQMRRQFGILLGDGTPHKLADGTWQLYDDVRQEIYGGMLHVT 191

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
            E Y   V +A  FL G +    E +   M +A  K+ +E A   RD + AL      
Sbjct: 192 PEAYRRRVDDACAFLEGKSREWLETLRAEMAEAATKQLFEKAAELRDVIFALEETLAK 249



 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 119/254 (46%), Gaps = 25/254 (9%)

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             L+   +  A P     IE +D SHI G   V  MV        K+ YR+F +      
Sbjct: 266 EALRALGEALARPPPR-TIECFDISHISGTFVVASMVHFANGRPDKDNYRRFQIKS--FI 322

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD   M  V+ RR+ +L +                 S+PD+V++DGG+GQ+ AA    
Sbjct: 323 GNDDFRAMEEVVGRRYRRLAEEGR--------------SFPDLVVIDGGRGQIGAAIKAF 368

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
              ++   + II +AK  +       FFV +   L L +  P L  +QR+RDEAHRFA T
Sbjct: 369 VAADLTPPV-IIGLAKKHET-----IFFVDERPPLNLPLNHPGLNLLQRVRDEAHRFANT 422

Query: 544 THRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            +   R KK   S LD+  G+GP+R+  LL  FG++  +  +S E +  +EG   K+A +
Sbjct: 423 YNAVLRSKKIRESVLDDFAGLGPVRRAALLAHFGSIDRLRAASIEEIGEVEGFGPKLAAE 482

Query: 603 IYNHF-HKNTSHTP 615
           ++     K     P
Sbjct: 483 LHAFLARKPEPVAP 496


>gi|163784243|ref|ZP_02179165.1| repair excision nuclease subunit C [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880485|gb|EDP74067.1| repair excision nuclease subunit C [Hydrogenivirga sp. 128-5-R1-1]
          Length = 347

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 153/346 (44%), Gaps = 7/346 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             ++ PE  GVY   +   + +Y+GKA NL+ R+K ++ +  + ++   +  +   + + 
Sbjct: 5   KIKEAPEKSGVYIFKNKN-KYIYIGKAKNLKNRLKGHLQALKYDYKEQKIFEESTQLEWI 63

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           +T ++ EA +LE  +IK+ KP++N++L+    +P ++IT+    P +   R    I G Y
Sbjct: 64  ITSSDYEAFILENALIKQYKPKYNVMLKSGSGYPMLVITNDE-YPTVKISRKYGEIDGEY 122

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF            + + F LR+C       R   C  + +  CS PC  +IS + YM
Sbjct: 123 FGPFIPAKTARAMKQLIHKVFKLRTC--DPMPKRNIACFDYHLGLCSAPCVNKISKKDYM 180

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
             V  AK FLSG    +  ++   + +   K  +E A + RD+++AL ++      +   
Sbjct: 181 LDVKSAKAFLSGDAGKVIYQLYDRIEEYMKKMLFEKAAVVRDQISALENLIKKQKVVGIP 240

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
                +++                NR      LK  +      I+S  +  +      P 
Sbjct: 241 EKEADIFYIN---YPDIYITVIRTNRIIGMDKLKVSNIEDEENIVSLIISYYKQGNFIPG 297

Query: 302 NILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN 347
            ++++++ E+   L+       G ++K+      E    I+Q + +
Sbjct: 298 KVVINKQLEDIENLQKWLSNVAGKEIKVETQIIPEVEAFIKQNIKH 343


>gi|149192493|ref|ZP_01870679.1| excinuclease ABC subunit C [Vibrio shilonii AK1]
 gi|148833674|gb|EDL50725.1| excinuclease ABC subunit C [Vibrio shilonii AK1]
          Length = 142

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 1/131 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D    V+YVGKA +L+KR+ SY      + +   ++S I  I  TV
Sbjct: 12  LKTVTNQPGVYRMYDAESVVIYVGKAKDLKKRLTSYFRKRVDSEKTRALVSNIAKIDVTV 71

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T TE EAL+LE N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YF
Sbjct: 72  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-GHKHPRLSMHRGARRKKGEYF 130

Query: 123 GPFASVDAVEK 133
           GP+    AV +
Sbjct: 131 GPYPDSGAVRQ 141


>gi|218506228|ref|ZP_03504106.1| excinuclease ABC subunit C [Rhizobium etli Brasil 5]
          Length = 195

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 116/192 (60%), Positives = 140/192 (72%)

Query: 33  KRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDK 92
           KR+ +Y     H++RI  M+ Q  N+ F  T TE EALLLEAN+IKRL+PRFN+LLRDDK
Sbjct: 1   KRVGNYAVGRVHSNRIAQMVRQTANMEFVTTRTETEALLLEANLIKRLRPRFNVLLRDDK 60

Query: 93  SFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVF 152
           SFPYILIT  H+ PA++KHR +   +G YFGPFAS  AV +TINSLQR F +R+C DSVF
Sbjct: 61  SFPYILITGDHRAPAIFKHRGARARKGDYFGPFASAGAVGRTINSLQRAFLIRTCTDSVF 120

Query: 153 RHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLK 212
             RTRPCLL+QIKRCSGPCT E+S E Y E V EAK FLSG +  +K  +A  MNQA   
Sbjct: 121 ETRTRPCLLYQIKRCSGPCTHEVSDEGYAELVQEAKDFLSGKSQKVKSHMAEAMNQAAED 180

Query: 213 EDYESAIIHRDR 224
            D+E A I+RDR
Sbjct: 181 LDFERAAIYRDR 192


>gi|15896707|ref|NP_350056.1| excinuclease ABC subunit C [Clostridium acetobutylicum ATCC 824]
 gi|15026559|gb|AAK81396.1|AE007844_6 Excinuclease ABC, subunit C (uvrC) [Clostridium acetobutylicum ATCC
           824]
 gi|325510873|gb|ADZ22509.1| Excinuclease ABC, subunit C [Clostridium acetobutylicum EA 2018]
          Length = 373

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 123/238 (51%), Gaps = 5/238 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
              ++P  PGVY M D    ++YVGK+ NL+ R++SY  +S +H+ ++  ++  + +  +
Sbjct: 6   KIRKLPSAPGVYLMKDSLNTIIYVGKSKNLRSRVQSYFVNSKSHSSKVLKLVKNLKDFDY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-G 119
            VT TE EALLLE  +IKR+KP +N  ++  K + YI I    K P++    +   +   
Sbjct: 66  IVTDTEFEALLLECKLIKRIKPIYNRQMKSPKGYCYIKIKLDEKYPSVEIKSNDERVGES 125

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGP+ S   VEK +  ++    +     +    +   CL +    C G CT   S E 
Sbjct: 126 LYFGPYTSKSTVEKALYGIKEHMKIL---CTNSSKKASGCLKYSTGLCLGMCTANPSFEY 182

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
           Y   + +  + LSG +  +  ++ + MN A+   D+E+A  +RD + +++++ +    
Sbjct: 183 YSSLIEKIIELLSGKDITIVGEMEKKMNIASNNFDFENAAKYRDFIKSINYLTSTAKI 240


>gi|319652381|ref|ZP_08006497.1| hypothetical protein HMPREF1013_03110 [Bacillus sp. 2_A_57_CT2]
 gi|317395843|gb|EFV76565.1| hypothetical protein HMPREF1013_03110 [Bacillus sp. 2_A_57_CT2]
          Length = 359

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 129/281 (45%), Gaps = 5/281 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRFTV 62
           + +P  PGVY + D  G+ LYVGKA NL+ R++SY  ++ H + +I  ++  + +  + +
Sbjct: 2   KNLPLTPGVYLLKDSQGQTLYVGKAKNLKNRVQSYFRNSKHLSPKIKKLVKHLRDFDYIL 61

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQGSY 121
           T TE EA +LE  +IK +KP +N +++  +SF YI ++       +    +        Y
Sbjct: 62  TDTEFEAFMLECQLIKSIKPLYNRMMKSPQSFIYISVSLTGNHRKIDIAYNLIENDGKVY 121

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGPF S   VE+ +  L+  F L     S    +   CL + +  C G C G  + ++Y 
Sbjct: 122 FGPFTSRSNVERALQGLKECFKL---NCSNLTGKNSACLNYSLGSCIGRCLGGPAEQQYN 178

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
           + +     FL G + ++ E + + M  A+   D+E+A  +RD   A+S +      I   
Sbjct: 179 DILDRFIGFLKGTDMSILEDMNQMMLNASEAFDFEAASAYRDHTQAVSSMLKKEKVIEFT 238

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTN 282
            +  ++   + L       F   +     +          +
Sbjct: 239 EENHNIVAIERLTDSTIKLFLIKRTDILFSHSYAAAGNIED 279


>gi|309805704|ref|ZP_07699744.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 09V1-c]
 gi|308164957|gb|EFO67200.1| excinuclease ABC, C subunit [Lactobacillus iners LactinV 09V1-c]
          Length = 367

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 161/385 (41%), Gaps = 37/385 (9%)

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT--DKP 298
           + D F+ Y ++    IQ  F    +     T                 F+ QFY   ++ 
Sbjct: 7   QRDIFNFYVSQGWISIQILFIRQSKLMRRETKIFNLTDIDKAKDEFESFIVQFYNAKNRL 66

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH----RSHTQ 354
            P  IL+ +    +SL  +   +          P +G+K+ +++ A  N+          
Sbjct: 67  FPNEILVPKGVNASSLAAVLKVRVKT-------PSRGQKKALLDMAYENSKIKLDEKIRL 119

Query: 355 KLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                +  +   ++      LP+   RIE +D+SHI G   V  +VV  +    K++YRK
Sbjct: 120 LELNNLKTKGAQEEIFNALGLPYGS-RIESFDHSHIQGTDPVSALVVFIDGMPAKHEYRK 178

Query: 415 FNLHPN--DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGG 472
           F L          D+    R V+ RR+S+++K                   P+++++DGG
Sbjct: 179 FKLKGEIEHQNGADEVKNTREVVRRRYSRMLKEH--------------LVLPNLILMDGG 224

Query: 473 KGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKF----FVKKGEALVLNMRDPILY 528
           K Q+ A   VL+   +   I +  + K          F      ++   + L+ +    Y
Sbjct: 225 KIQVDACLDVLRN-ELNVNIPVAGMVKDNCHRTNHLIFGDPTVGEELRTIPLDSKSQAFY 283

Query: 529 FIQRLRDEAHRFAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            I R++DE HRFAIT HR    K +  S LDEI GIGP  +  LL++FG++K I  +S E
Sbjct: 284 LITRIQDEVHRFAITFHRNLHNKNSLASKLDEIKGIGPRSRNKLLKNFGSLKKIREASIE 343

Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612
            L  I G++   A  +      + +
Sbjct: 344 DLKGI-GLTLTQAQSVKLVLENSQN 367


>gi|23428534|gb|AAL11448.1| uvrC-like protein [Serratia plymuthica]
          Length = 137

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 57/126 (45%), Positives = 76/126 (60%), Gaps = 1/126 (0%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M D  G V+YVGKA +L+KR+ SY      + +   ++  I  I  TVT 
Sbjct: 13  TVTSQPGVYRMYDATGTVIYVGKAKDLKKRLASYFRLQVGSRKTETLVKNIAQIDVTVTH 72

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE EALLLE N IK  +PR+N+LLRDDKS+P I ++     P L  HR +   +G YFGP
Sbjct: 73  TETEALLLEHNYIKLYQPRYNVLLRDDKSYPLIFLS-ADSHPRLAVHRGAKHAKGEYFGP 131

Query: 125 FASVDA 130
           F +  A
Sbjct: 132 FPNSYA 137


>gi|161221615|gb|ABX60171.1| exonuclease [Halomonas anticariensis]
          Length = 178

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 2/159 (1%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+MLD  G   Y+GKA  L+ R+ SY     +T +   ++++I +I  T+T +E 
Sbjct: 13  AAPGVYRMLDDRGDTPYIGKAKRLKSRLASYFRGALNT-KTQALVARIADIEVTLTRSET 71

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-DSSTIQGSYFGPFA 126
           EALL+E  +IK L+P +NILLRDDKS+P++ ++D+H  PAL   R  +    G Y GP+ 
Sbjct: 72  EALLMEQALIKELRPPYNILLRDDKSYPFVFVSDRHPYPALEHKRARNRRSDGRYLGPYP 131

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIK 165
           S  AV +T++ +Q+ F +R+C DSVF +RTRPCL FQI+
Sbjct: 132 SSGAVRETLSLMQKIFRIRNCEDSVFGNRTRPCLXFQIE 170


>gi|315453015|ref|YP_004073285.1| excinuclease ABC subunit C [Helicobacter felis ATCC 49179]
 gi|315132067|emb|CBY82695.1| excinuclease ABC subunit C [Helicobacter felis ATCC 49179]
          Length = 419

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 117/249 (46%), Gaps = 14/249 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMIS 53
             E +PE  GVY   D   ++LY+GKA NL+KRI SY          +  +  R+  M+S
Sbjct: 5   QLEHLPESCGVYLYWDATEKLLYIGKAKNLKKRILSYFTLQAGRAVPNPRNNARVRDMVS 64

Query: 54  QINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD 113
           +I  + + +T +E EALLLE  +IK+ +PR+NILL+D K++PY+        P L+  R 
Sbjct: 65  KIARVEWRLTPSEHEALLLEDRLIKQYQPRYNILLKDSKTYPYVCFDPTLPYPVLHLQRH 124

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                   FGPF+     ++ + S+     L      V       C+ ++IKRC  PC G
Sbjct: 125 PRKH-LRCFGPFS--LGAKEILESVLDFIPLVQSPSCV--RGKHACVFYEIKRCLAPCEG 179

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +IS + Y   + E    L      L  ++   M     +E +E A I RDR + + ++  
Sbjct: 180 KISPQDYALLLQEGVALLENL-PALSVRLQARMRALASQERFEEAAIWRDRWSKIQNLLE 238

Query: 234 HNDSIYNRM 242
                    
Sbjct: 239 RLAYPLEEC 247



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 31/188 (16%)

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           +       L     R+E++D SH      VG MVV  E  + K  YR++      ++ +D
Sbjct: 249 RALQILLGLKTPVTRVEVFDVSHHAKSHCVGGMVVFSEGKWEKRAYRRY-----VLQGKD 303

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           + + MR +LERR  +L                     PD+ ++DGG+ Q+  A  VL+  
Sbjct: 304 EYSQMRELLERRVQRLQ------------------HPPDLWLIDGGRAQVRIALQVLQSA 345

Query: 487 NVENRITIISIAK----GPKRSAGMEK--FFVKKGEALVLNMRDPILYFIQRLRDEAHRF 540
              + + ++ IAK    G  R +  +       +   L L   DP L F+QRLRDEAHR+
Sbjct: 346 G--HSVEVLGIAKAKFKGRTRRSLGDVPDVIYTRDRVLHLKANDPCLQFLQRLRDEAHRY 403

Query: 541 AITTHRKR 548
           AIT HR +
Sbjct: 404 AITFHRTK 411


>gi|261404343|ref|YP_003240584.1| Excinuclease ABC subunit C domain-containing protein [Paenibacillus
           sp. Y412MC10]
 gi|261280806|gb|ACX62777.1| Excinuclease ABC C subunit domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 368

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 138/305 (45%), Gaps = 7/305 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60
             +++P  PGVY M D  G V+YVGK+ +L+KR++SY ++N  H+ ++  ++  + ++  
Sbjct: 4   KIQELPLSPGVYLMRDSRGTVIYVGKSKSLKKRVQSYFYNNKSHSPKVKRLVQHVKDLEH 63

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS---STI 117
            VT TE EA +LE  +I+ +KP +N  +++   + YI++  K     L         +  
Sbjct: 64  IVTDTEFEAFMLECRLIQDIKPMYNRKMKNPLGYSYIVLRQKRDWRWLEITDTLDEGTHE 123

Query: 118 QGSYFGPFA-SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
              +FGP+  S  ++E  +  ++    +             PCL + I  C G C G  S
Sbjct: 124 PSRFFGPYTASRHSLEHAVQKVKECCKIACNHAPAASSANTPCLNYSIGLCLGKCLGGES 183

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           + ++ E +      L G +  L +++ R M  A  + D+E A  +RD + A++ + +  D
Sbjct: 184 ARQFDEVMDRFIALLQGDDRRLYDEMERTMLGAAERFDFEQAAKYRDGMEAVNLLLSKRD 243

Query: 237 SIYNRMDCFSLYHNK--NLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY 294
            I    +  S+   +  N   I+           +    + T ++  + +     L   Y
Sbjct: 244 VIEFAEENHSIVVYEYLNEDTIKLFLIKGNVVLHSERCSVATTADIESLRQRVKALILSY 303

Query: 295 TDKPC 299
             +  
Sbjct: 304 FTRDP 308


>gi|153831516|ref|ZP_01984183.1| UvrABC system protein C [Vibrio cholerae 623-39]
 gi|148873002|gb|EDL71137.1| UvrABC system protein C [Vibrio cholerae 623-39]
          Length = 178

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 95/193 (49%), Gaps = 18/193 (9%)

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
             +   DD A M  VLERR+S+ +                    PD++ +DGGKGQL+ A
Sbjct: 1   TGITGGDDYAAMAQVLERRYSKQLD---------------SSKIPDIIFIDGGKGQLNRA 45

Query: 480 QGVLKKL--NVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEA 537
             ++     +      II IAKG  R  G+E      G+   L    P L+ IQ +RDE+
Sbjct: 46  YEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDES 105

Query: 538 HRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           H  AI  HR +R K    S L+ I G+GP R++ LL+  G ++ + R+S E +A + GIS
Sbjct: 106 HNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGIS 165

Query: 597 KKIACKIYNHFHK 609
             +A  IY    +
Sbjct: 166 HALAENIYQALKQ 178


>gi|329930147|ref|ZP_08283765.1| GIY-YIG catalytic domain protein [Paenibacillus sp. HGF5]
 gi|328935304|gb|EGG31783.1| GIY-YIG catalytic domain protein [Paenibacillus sp. HGF5]
          Length = 368

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 124/255 (48%), Gaps = 5/255 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRF 60
             +++P  PGVY M D  G V+YVGK+ +L+KR++SY ++N  H+ ++  ++  + ++  
Sbjct: 4   KIQELPLSPGVYLMRDSRGTVIYVGKSKSLKKRVQSYFYNNKSHSPKVKRLVQHVKDLEH 63

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST---I 117
            VT TE EA +LE  +I+ +KP +N  +++   + YI++  K     L            
Sbjct: 64  IVTDTEFEAFMLECRLIQDIKPMYNRKMKNPLGYSYIVLRQKRDWRWLEFTDTLDEGGPD 123

Query: 118 QGSYFGPFA-SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
           +   FGP+  S  ++E  +  ++    +             PCL + I  C G C G  +
Sbjct: 124 RSRCFGPYTASRHSLEHAVQKVKECCKIACNHTPAASSANTPCLNYSIGLCLGKCLGGET 183

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           + ++ E +      L G + +L +++ R M  A  + D+E A  +RD + A++ + +   
Sbjct: 184 ARQFDEIMDRFIALLQGDDRSLYDEMERTMLGAAERFDFEQAAKYRDGMEAVNLLLSKRH 243

Query: 237 SIYNRMDCFSLYHNK 251
            I    +  S+   +
Sbjct: 244 VIEFAEENHSIVVYE 258


>gi|294507448|ref|YP_003571506.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8]
 gi|294343776|emb|CBH24554.1| DNA polymerase III epsilon subunit [Salinibacter ruber M8]
          Length = 563

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 9/345 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
            +P+ PGVY M + +G  LY+GKA  L  R++S+  +   +  R   M+ ++ ++ +T T
Sbjct: 211 DVPDEPGVYVMKNRSGTPLYIGKAKRLPDRLRSHFTAVESSGARKRKMLQKVRSVDWTTT 270

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EA+LLE+  IK  KPR+N   R   + P+I +   H+ P +   R        Y+G
Sbjct: 271 ATELEAILLESRRIKAEKPRYNRAQRRYYNRPFIRLDTAHEYPTVSWTRRLEADGAEYYG 330

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P  + +  E  ++ + R F LR C D       R CL   + RC+ PC  + + E Y   
Sbjct: 331 PVRNTEQAEMVVDVVGRFFQLRECDDERLHLGQR-CLYADMDRCTVPCETKDA-EAYATV 388

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           V   + FL+G + ++   +   M +A+   ++E A   RD L  L  I          + 
Sbjct: 389 VERVRAFLTGQDQSVLGTMWDRMQRASDNLNFEKAAELRDTLEQLERILEKQRVAAAPVR 448

Query: 244 CFSLYHNKNLAC----IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
             +             +      FG+   +         E      L    R  +  +  
Sbjct: 449 QHNAALVHQAPDRAGRVDVMLVRFGRFEESIACAAPPSPEE--RDSLLERCRSVFDVEAD 506

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
           P       +A E  LL    +        +    +     + +  
Sbjct: 507 PPETFSKRDATEIRLLSHWVYAHRDELTAVRWTPRTSPADLADAI 551


>gi|219854880|ref|YP_002472002.1| hypothetical protein CKR_1537 [Clostridium kluyveri NBRC 12016]
 gi|219568604|dbj|BAH06588.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 363

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 165/351 (47%), Gaps = 9/351 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGK+ NL+ RI SY   S +HT ++  ++  + +  +
Sbjct: 8   KIKELPSSPGVYLMKDSLNSIIYVGKSKNLKNRIASYFQNSKSHTPKVLKLVKNLRDFDY 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQG 119
            +T TE EA +LE  +IK++KP +N  +++ +++ YI I    K P +    +       
Sbjct: 68  ILTDTEFEAFMLECKLIKQIKPIYNKQMKNTQAYCYIKI--NQKYPDIKISNEYVKNDGN 125

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGP+ S + VE+ I  ++    +     + F+  +  CL + +  C G C      ++
Sbjct: 126 LYFGPYPSRNTVERGIQGIKECCKIF--CSNNFKKASY-CLNYSLDLCLGMCLDSTVEKQ 182

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   + +    L+G + ++ +++   MN+A+ K ++E+A  +RD +++++++ N  +   
Sbjct: 183 YSTILDKIINLLNGTDKSILKEMEYTMNKASDKFNFENAAKYRDYISSVNYLLNRANICK 242

Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                 ++   ++L      FF     +   +  ++L+          +   +  ++ +K
Sbjct: 243 FVKKNKNIAFLEHLEHNNIKFFLIKGNKVIFSKKYYLENIDFQKLKSSVKSNILFYFNNK 302

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
              ++I L +E  + S +  S+ +         V        + + ++  A
Sbjct: 303 AIKKSIELHKEKMDESQIIYSYLRSKSINRTYVVISSKWLNNLNDTSIDKA 353


>gi|153954277|ref|YP_001395042.1| UvrABC-related protein, protein C [Clostridium kluyveri DSM 555]
 gi|146347158|gb|EDK33694.1| UvrABC-related protein, protein C [Clostridium kluyveri DSM 555]
          Length = 361

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 165/351 (47%), Gaps = 9/351 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             +++P  PGVY M D    ++YVGK+ NL+ RI SY   S +HT ++  ++  + +  +
Sbjct: 6   KIKELPSSPGVYLMKDSLNSIIYVGKSKNLKNRIASYFQNSKSHTPKVLKLVKNLRDFDY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQG 119
            +T TE EA +LE  +IK++KP +N  +++ +++ YI I    K P +    +       
Sbjct: 66  ILTDTEFEAFMLECKLIKQIKPIYNKQMKNTQAYCYIKI--NQKYPDIKISNEYVKNDGN 123

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGP+ S + VE+ I  ++    +     + F+  +  CL + +  C G C      ++
Sbjct: 124 LYFGPYPSRNTVERGIQGIKECCKIF--CSNNFKKASY-CLNYSLDLCLGMCLDSTVEKQ 180

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           Y   + +    L+G + ++ +++   MN+A+ K ++E+A  +RD +++++++ N  +   
Sbjct: 181 YSTILDKIINLLNGTDKSILKEMEYTMNKASDKFNFENAAKYRDYISSVNYLLNRANICK 240

Query: 240 NRMDCFSLYHNKNLACIQTCFF--HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
                 ++   ++L      FF     +   +  ++L+          +   +  ++ +K
Sbjct: 241 FVKKNKNIAFLEHLEHNNIKFFLIKGNKVIFSKKYYLENIDFQKLKSSVKSNILFYFNNK 300

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
              ++I L +E  + S +  S+ +         V        + + ++  A
Sbjct: 301 AIKKSIELHKEKMDESQIIYSYLRSKSINRTYVVISSKWLNNLNDTSIDKA 351


>gi|167957060|ref|ZP_02544134.1| excinuclease ABC subunit C [candidate division TM7 single-cell
           isolate TM7c]
          Length = 534

 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 8/236 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
             + +P  PGVY     +G ++Y+GKA  L+ R++ Y  S+     +   ++++I +  +
Sbjct: 8   KLKTLPRSPGVYFHKSASGEIIYIGKAAVLKNRVRQYFQSSKDFDAKTRALVAEIYDTDW 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T +E++AL LE+ MIKR  PR+NILLRDDKS  ++ I  K + P +   R+ +     
Sbjct: 68  IETESEIDALFLESEMIKRYMPRYNILLRDDKSQTFVRIDMKSEWPTVSFTRNPADDGAE 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y GPF +  A++K++  L+R F   +      + +    L    +   G          Y
Sbjct: 128 YIGPFYNGFALKKSLRYLRRVFPYLTRQRRPGQSKLDEDLGLSPRLSDGSV-------AY 180

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
              + +   ++ G    +  ++ R+M  A    D+E A   R++L+A+  +Q    
Sbjct: 181 KASLRKLISYIKGNRKAIAAELERDMKTAAGLHDFERAADLRNKLSAMRELQRRVC 236



 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 93/454 (20%), Positives = 152/454 (33%), Gaps = 84/454 (18%)

Query: 217 SAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT 276
              +  D  +    +    +   +  +    ++N         +        T       
Sbjct: 101 QTFVRIDMKSEWPTVSFTRNPADDGAEYIGPFYNGFALKKSLRYLRRVFPYLTRQRRPGQ 160

Query: 277 DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336
                +  +           K     ++   +    ++                  +  +
Sbjct: 161 SKLDEDLGLSPRLSDGSVAYKASLRKLISYIKGNRKAIAAELERDMKTAAGLHDFERAAD 220

Query: 337 KRK-IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395
            R  +     +        K   +IS    L D  K   L +IP RIE YD SH+ G   
Sbjct: 221 LRNKLSAMRELQRRVCFGDKEFLDISKDKALADLAKLLGLKNIPVRIEGYDISHMSGRQV 280

Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455
           V  MVV       + +YRKF +   +    DD   +   + RR S              +
Sbjct: 281 VSSMVVFTNGASDRAEYRKFKVSEKN----DDTGNIYQTIFRRLS--------------E 322

Query: 456 QEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPK----RSAG----- 506
           +       PD++++DGGKGQL+AA     +  V   + I+SIAK  +       G     
Sbjct: 323 RHLKGWGRPDLLLIDGGKGQLAAAIRARDERGVA--VPIVSIAKREEELLVHKTGSQIDI 380

Query: 507 -----------MEKFFVKKGEALVLN---------MRDPIL------------------- 527
                       +    + GE  V+N              L                   
Sbjct: 381 AFIEQFRSQLRTDVMVYEDGEVYVVNLHPGQRNAGSHSKNLRAADDSLVMSVQDQVSNSD 440

Query: 528 ------------YFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQS 574
                          QR+RDE+HRFA++ H   +RK A  S LD+I+GIGP  KR LL+ 
Sbjct: 441 NINTLFASTDIIKLFQRIRDESHRFAVSYHSTLKRKNATKSILDDIHGIGPKTKRKLLRH 500

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           FG++  I ++S E ++ I   +  +A KI N   
Sbjct: 501 FGSLGNIKKASIEDISKIT--NDSLAKKIKNSLR 532


>gi|161986630|ref|YP_445565.2| hypothetical protein SRU_1441 [Salinibacter ruber DSM 13855]
          Length = 563

 Score =  199 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 9/345 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
            +P+ PGVY M + +G  LY+GKA  L  R++S+  +   +  R   M+ ++ ++ +T T
Sbjct: 211 DVPDEPGVYVMKNRSGTPLYIGKAKRLPDRLRSHFTAVESSGARKRKMLQKVRSVDWTTT 270

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EA+LLE+  IK  KPR+N   R   + P+I +   H+ P +   R        Y+G
Sbjct: 271 ATELEAILLESRRIKAEKPRYNRAQRRYYNRPFIRLDTAHEYPTVSWTRRLEADGAEYYG 330

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P  + +  E  ++ + R F LR C D       R CL   + RC+ PC  + + E Y   
Sbjct: 331 PVRNTEQAEMVVDVVGRFFQLRECDDERLHLGQR-CLYADMDRCTVPCETKDA-EAYATV 388

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           V   + FL+G + ++   +   M +A+   ++E A   RD L  L  I          + 
Sbjct: 389 VERVRAFLTGQDQSVLGTMRDRMQRASDNLNFEKAAELRDTLEQLERILEKQRVAAAPVR 448

Query: 244 CFSLYHNKNLAC----IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
             +             +      FG+   +         E      L    R  +  +  
Sbjct: 449 QHNAALVHQAPDRAGRVDVMLVRFGRFEESIACAAPPSPEE--RDSLLERCRSVFDVEAD 506

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
           P       +A E  LL    +        +    +     + +  
Sbjct: 507 PPETFSKRDATEIRLLSHWVYAHRDELTAVRWTPRTSPADLADAI 551


>gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
 gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
          Length = 572

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 2/229 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +PE PGVY   D  GRVLYVG + +++ R++SY  ++    R++ M+    ++   V
Sbjct: 214 ADGLPEAPGVYLFKDGQGRVLYVGTSVSIRTRVRSYFTASEKRRRMSEMVRIAESVTPIV 273

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +EA + E  +IK  KPR+N   R  +   ++ +T     P L   RD +     Y 
Sbjct: 274 CATPLEAEVRELRLIKEHKPRYNRKSRHPERSWWVKLTV-EPFPRLSIVRDVADDDTRYI 332

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEKYM 181
           GPFAS  + +  + ++     LR C + +   + R  C L  + RC  PCTG  S E Y 
Sbjct: 333 GPFASRGSADDAVAAVHEVLPLRQCLERLSATKPRSACALADMGRCGAPCTGAQSVEDYA 392

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
             V EA   L+G   +        M+    +E +E A I RDR+ +L  
Sbjct: 393 AVVAEAVALLAGDASSAVSTWRERMDHLAEQERFEDAGIVRDRMLSLVR 441


>gi|83757883|gb|ABC45996.1| exonuclease family [Salinibacter ruber DSM 13855]
          Length = 538

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 9/345 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
            +P+ PGVY M + +G  LY+GKA  L  R++S+  +   +  R   M+ ++ ++ +T T
Sbjct: 186 DVPDEPGVYVMKNRSGTPLYIGKAKRLPDRLRSHFTAVESSGARKRKMLQKVRSVDWTTT 245

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EA+LLE+  IK  KPR+N   R   + P+I +   H+ P +   R        Y+G
Sbjct: 246 ATELEAILLESRRIKAEKPRYNRAQRRYYNRPFIRLDTAHEYPTVSWTRRLEADGAEYYG 305

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P  + +  E  ++ + R F LR C D       R CL   + RC+ PC  + + E Y   
Sbjct: 306 PVRNTEQAEMVVDVVGRFFQLRECDDERLHLGQR-CLYADMDRCTVPCETKDA-EAYATV 363

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           V   + FL+G + ++   +   M +A+   ++E A   RD L  L  I          + 
Sbjct: 364 VERVRAFLTGQDQSVLGTMRDRMQRASDNLNFEKAAELRDTLEQLERILEKQRVAAAPVR 423

Query: 244 CFSLYHNKNLAC----IQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
             +             +      FG+   +         E      L    R  +  +  
Sbjct: 424 QHNAALVHQAPDRAGRVDVMLVRFGRFEESIACAAPPSPEE--RDSLLERCRSVFDVEAD 481

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQA 344
           P       +A E  LL    +        +    +     + +  
Sbjct: 482 PPETFSKRDATEIRLLSHWVYAHRDELTAVRWTPRTSPADLADAI 526


>gi|37521011|ref|NP_924388.1| excinuclease ABC subunit C [Gloeobacter violaceus PCC 7421]
 gi|35212007|dbj|BAC89383.1| excinuclease ABC subunit C [Gloeobacter violaceus PCC 7421]
          Length = 370

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 145/336 (43%), Gaps = 10/336 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61
            E +P+ PGVY+ +D  GR+LY+GK+ +L+ R++SY+     H+ +   +  +   +   
Sbjct: 12  LEDLPDAPGVYRFVDCDGRLLYIGKSVHLRTRVRSYLRRDGGHSRQTERLKFEAQAVEVL 71

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
            T +E+ ALLLE  +I+   P FN   +  + +P++ ++ +   P L+  R  +     Y
Sbjct: 72  CTGSELAALLLEGRLIREYLPPFNQAQKRYRQYPFLRLSVQEDYPRLHLTRVLAGDGAEY 131

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +GP++    V    + L  +  LR+C D  F      CLL Q+ +C GPC       +Y 
Sbjct: 132 YGPYSQARFVSWMADLLSASLGLRTCRD--FSAIYHGCLLDQLGKCLGPCRTGALVAQYR 189

Query: 182 EFVHEAKKFLSGGNH--NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           E V   +  L G +    +     R M  A  +ED+E A   RDR  AL++   H   + 
Sbjct: 190 ERVERLRALLRGEDTGSGIIVDFERQMLNAAQREDFEQAARWRDRRQALANFVTHQGHLR 249

Query: 240 NRMDCFSLYHNKNL----ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYT 295
            R+   ++            +Q  +   G+     +F      E   A++       +  
Sbjct: 250 ERVSLDAVAVYPGAPRSPTSVQLFWIRQGKLTLQQSFAGDLPQERLRAELAHTLAGHYSE 309

Query: 296 DKPC-PENILLSEEAEETSLLEISFFKQYGYKVKIT 330
             P  P   L  ++ +E  ++    ++       + 
Sbjct: 310 GLPPAPLFALPQQDLDEVQMVSGWLYRHRTDDTLLW 345


>gi|39938919|ref|NP_950685.1| nuclease subunit of the excinuclease complex [Onion yellows
           phytoplasma OY-M]
 gi|39722028|dbj|BAD04518.1| nuclease subunit of the excinuclease complex [Onion yellows
           phytoplasma OY-M]
          Length = 461

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/489 (23%), Positives = 200/489 (40%), Gaps = 40/489 (8%)

Query: 51  MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110
           +I +  +  + +T  E EAL+LEAN+IK+  P++N  L DDK++PYI IT K K P L  
Sbjct: 2   LIEETQDFFYIITNNEQEALILEANLIKKHTPKYNFKLLDDKTYPYIEIT-KEKHPQLKI 60

Query: 111 HRDSSTIQGS-YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169
            R      G   FGP+ ++   ++      +   L            +PCL F I +C G
Sbjct: 61  SRFKQIPPGKIIFGPYPNLKNTKE----TLKLLHLLYPLRRCPLASKKPCLHFHINQCLG 116

Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229
            C     +  Y   +    KFL G   ++ +K+   M  A+ K  YE A  +RD + A+ 
Sbjct: 117 AC--AGKTINYKPNIEAITKFLKGNIKDILKKLHHLMQTASEKMFYEKAQEYRDIIYAIK 174

Query: 230 HIQNHN---DSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQIL 286
                    +      D F+   N++   IQ      G    +              + +
Sbjct: 175 QTTKKQLIINQKLKNCDIFAYSFNQDQISIQILKMRQGNIVDSYHSVFSYVGFV--WENI 232

Query: 287 SYFLRQFYTDKPCPENILLSEEAEETSLLEISFFK---QYGYKVKITVPKQGEKRKIIEQ 343
             +L  +Y     P+ I+  +  +ET L ++   +   +   + K+ +  +G+K+K+   
Sbjct: 233 LTYLNCYYQKNLKPDIIITGKSQDETILQQMITNQTLLEQILQTKVNIAHKGDKKKLYLL 292

Query: 344 ALINAHRSHTQKLSTEISHQMILKDF--TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401
           AL NA            S    +++             KRI+++DNS + G + V   +V
Sbjct: 293 ALKNAQNDLANNNLIYQSKDQKIQESLDKLAIIFNKDIKRIDVFDNSQLFGQAFVAARIV 352

Query: 402 VGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP 461
                F K  YR F++        ++       L R +++  + + +             
Sbjct: 353 FNHFEFDKKLYRTFHIKGKF---PNEYQAFEETLTRCYNKDKEVKNDS------------ 397

Query: 462 SWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLN 521
             PD++++DG  GQL  +Q  LKKL  E  I + ++ K  K         V   E L+L 
Sbjct: 398 --PDLILVDGSLGQLRQSQKTLKKLGYE--IPLGALQKNNKHQL---THLVTLQEKLMLE 450

Query: 522 MRDPILYFI 530
               + YF+
Sbjct: 451 QSPNLFYFL 459


>gi|126031198|pdb|2NRT|A Chain A, Crystal Structure Of The C-Terminal Half Of Uvrc
 gi|126031199|pdb|2NRV|A Chain A, Crystal Structure Of The C-Terminal Half Of Uvrc
 gi|126031200|pdb|2NRV|B Chain B, Crystal Structure Of The C-Terminal Half Of Uvrc
 gi|126031201|pdb|2NRW|A Chain A, Crystal Structure Of The C Terminal Half Of Uvrc
 gi|126031202|pdb|2NRX|A Chain A, Crystal Structure Of The C-Terminal Half Of Uvrc, In The
           Presence Of Sulfate Molecules
 gi|126031203|pdb|2NRX|B Chain B, Crystal Structure Of The C-Terminal Half Of Uvrc, In The
           Presence Of Sulfate Molecules
 gi|126031204|pdb|2NRZ|A Chain A, Crystal Structure Of The C-Terminal Half Of Uvrc Bound To
           Its Catalytic Divalent Cation
 gi|126031205|pdb|2NRZ|B Chain B, Crystal Structure Of The C-Terminal Half Of Uvrc Bound To
           Its Catalytic Divalent Cation
          Length = 220

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 125/245 (51%), Gaps = 33/245 (13%)

Query: 364 MILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVK 423
             L++  K   +   P RIE  D SH+ G   V  +VV  +    K  YR++ +  +   
Sbjct: 7   EALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKGDYRRYKIEQDH-- 64

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD   +R V++RR+S+                      P+++ +DGG GQ++AA   L
Sbjct: 65  -PDDYESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAIEAL 104

Query: 484 KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAIT 543
           K++  +    ++ +AK  +         V +   + L    P+L  + ++RDE HRFA++
Sbjct: 105 KEIGKDC--PVVGLAKKEET-------VVFENREIHLPHDHPVLRLLVQIRDETHRFAVS 155

Query: 544 THRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            HRKRR+K +  S LD + GIGP+RK+ L++ FG+++ I  +S E +A + G S +IA +
Sbjct: 156 YHRKRREKESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG-STEIARR 214

Query: 603 IYNHF 607
           + +  
Sbjct: 215 VLDIL 219


>gi|495213|gb|AAA65232.1| DNA repair enzyme [Pseudomonas syringae]
          Length = 150

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 81/126 (64%), Gaps = 1/126 (0%)

Query: 21  RVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRL 80
            +LYVGKA NL+KR+ SY     H  +   ++S+I  I  T+T  E EALLLE  +IK  
Sbjct: 26  TLLYVGKAKNLKKRLASYFRKTGHAPKTGALVSRIAQIETTITGNETEALLLEQTLIKEW 85

Query: 81  KPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQR 140
           +P +NILLRDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  A+ ++++ LQ+
Sbjct: 86  RPPYNILLRDDKSYPYVFLSDN-AFPRLSIHRGTKKAKGRYFGPYPSAGAIRESLSLLQK 144

Query: 141 TFFLRS 146
           TF +R 
Sbjct: 145 TFQVRQ 150


>gi|225155774|ref|ZP_03724262.1| excinuclease ABC C subunit domain protein [Opitutaceae bacterium
           TAV2]
 gi|224803568|gb|EEG21803.1| excinuclease ABC C subunit domain protein [Opitutaceae bacterium
           TAV2]
          Length = 540

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 23/250 (9%)

Query: 360 ISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHP 419
            +    ++   +   LP  P+ +E +D SHI G   V  MV   +    KN YR+F +  
Sbjct: 296 ATDTAAMRALGEALGLPAPPRTLECFDISHISGTFVVASMVHFADGRPDKNNYRRFQIKS 355

Query: 420 NDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAA 479
                 DD   M  V+ RR+ +L +  +               +PD++++DGG+GQ++AA
Sbjct: 356 --FIGNDDFRAMEEVVGRRYRRLREEGK--------------PFPDLIVIDGGRGQIAAA 399

Query: 480 QGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHR 539
                 ++      +I +AK  +        F  +   L L +  P L  +QRLRDEAHR
Sbjct: 400 LKAFAIIDAP-PPPLIGLAKKHET-----IIFPDERAPLNLPLTHPALSLLQRLRDEAHR 453

Query: 540 FAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           FA T +   R  K   S LD+ +G+G +R+  LL  FG +  +  ++   +  + G   K
Sbjct: 454 FANTYNADLRSRKIRESVLDDFDGLGEVRRAALLAHFGDIDRLRAATEAQIREVSGFGPK 513

Query: 599 IACKIYNHFH 608
           +A +++   H
Sbjct: 514 LAAELHAWLH 523



 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 5/170 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN----HTHRITHMISQINN 57
               +P+ PGVY M D  GR++YVGKA +L+KR+ SY   +        +I  +I  I +
Sbjct: 12  KVRHLPDKPGVYLMRDRLGRIIYVGKAKSLKKRVSSYFMPSRAARELHPKIRALIQLIAD 71

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
                  +E EALLLE  +IK  +P++N    DDK F  + +     +P     R     
Sbjct: 72  FDTIEVKSEPEALLLEGRLIKEWRPKYNTDFTDDKRFLLVRVDPMEPLPKFRLTRIRKDT 131

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKR 166
           +  YFGPFA    + KT+  ++R F +     +  R    R  L   +++
Sbjct: 132 RSRYFGPFAHSGLLRKTLAQMRRQFGILLGDATPRRLDDGRWQLYDDVRQ 181


>gi|156308349|ref|XP_001617653.1| hypothetical protein NEMVEDRAFT_v1g225912 [Nematostella vectensis]
 gi|156195035|gb|EDO25553.1| predicted protein [Nematostella vectensis]
          Length = 201

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 24/223 (10%)

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
           + G   V   VV       K +YR +N+    V   DD A M  V+ RR+ +L+   E L
Sbjct: 1   MQGTHPVAACVVFKNGKPSKKEYRHYNIKT--VVGPDDFASMEEVVFRRYKRLLSENEPL 58

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                         P ++++DGGKGQLS+A   L  L +  +I II IAK  +     E 
Sbjct: 59  --------------PQLIVIDGGKGQLSSALKSLDVLGLRGKIAIIGIAKRLE-----EI 99

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRK 568
           ++      L L+ +   L  IQ+LR+EAHRF IT HR +R K+   S L++I  IG    
Sbjct: 100 YYPGDAVPLYLDKKSETLKIIQQLRNEAHRFGITFHRNKRSKSAIQSELEQIPTIGKQTI 159

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
             LL+ F + K + ++S E L +   I    A  I+ +F+   
Sbjct: 160 TTLLRKFKSAKRVKKASFEELEA--EIGHARANIIFKYFNPKE 200


>gi|260910774|ref|ZP_05917426.1| excision endonuclease subunit UvrC [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260635096|gb|EEX53134.1| excision endonuclease subunit UvrC [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 149

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 49/124 (39%), Positives = 79/124 (63%), Gaps = 1/124 (0%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG YQ  D    ++YVGKA +L+ R+ SY H      +   ++S+I +I +TV  
Sbjct: 19  SLPEKPGSYQFYDEQHTIIYVGKAKSLKSRVSSYFHKEVDRFKTKVLVSKIFDISYTVVN 78

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE +ALLLE ++IK+  PR+N+LL+D K++P I +T+    P ++K R  +   G+Y+GP
Sbjct: 79  TEEDALLLENSLIKKYNPRYNVLLKDGKTYPSICVTN-ELYPRIFKTRTINKRLGTYYGP 137

Query: 125 FASV 128
           ++ V
Sbjct: 138 YSHV 141


>gi|322807518|emb|CBZ05093.1| nuclease subunit of the excinuclease complex [Clostridium botulinum
           H04402 065]
          Length = 365

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 153/348 (43%), Gaps = 7/348 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
            ++ +P+ PG+Y M D    ++YVGK+ NL+KR+ SY   +N+ T ++  ++  I + ++
Sbjct: 6   KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKSNNITSKVEKLVKNIKDFQY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EALLLE N IK +KP++N L+++ + + YI I  + K P +    +       
Sbjct: 66  ICTDTELEALLLECNFIKHIKPQYNRLMKNHERYVYIQINIEDKYPIIKVVSEIIDDDSL 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF S + + K I  L     L  C +  +      C+ + I +C GPC   ISS++Y
Sbjct: 126 YYGPFISYNRILKFIEGLNEILPLIKCNN--YLKHKSTCINYAIGKCEGPCIESISSKQY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238
            ++V +   F  G    +   + + M + +   ++E A I ++ +   S +     +   
Sbjct: 184 KKYVDKVISFFHGEKDLIIS-LEKAMIEYSQTLEFEKAKIFKEYIDVFSSVFQEYKHIIP 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            N  + F +         +  F +        T  +   S+    +       +FY    
Sbjct: 243 LNNYNKFIIIDATRKNIFKVIFINNHNIEYIDTITIDNISKENLEEYFKNIYLRFYLINH 302

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
             ++  +  + E    + I F      K  I     G+   + +    
Sbjct: 303 NNKSKNIVNK-EFIDYVHIIFSYINMKKEDIVYSNIGQDDNVCDLGEK 349


>gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 605

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 108/237 (45%), Gaps = 5/237 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ MP  PGVY   D  G VLYVGK+ +L+ R++SY  ++    RI  M+     +R  V
Sbjct: 238 ADGMPSAPGVYLFEDARGEVLYVGKSNDLRARVRSYFTASETRRRIREMVGLAERVRPIV 297

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +EA + E  +I   KPR+N   +  +   ++ +T     P L   RD    Q  Y 
Sbjct: 298 CATALEAEVRELRLIAEHKPRYNRRSKFPERTLWLKLTVGETFPRLSIVRDCRDEQAVYL 357

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH-----RTRPCLLFQIKRCSGPCTGEISS 177
           GPF S+   E+   +L     LR C   +        R R C L QI RC  PC G  S+
Sbjct: 358 GPFGSLRQAEEARAALHEAVPLRQCTQRLTPRLIAHGRARTCALGQIGRCGAPCEGRQSA 417

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           + Y+  V  A+  + G    +       +++  ++  YE A   RDRLAA       
Sbjct: 418 DVYLRHVETARSIMEGDVRPVVAAARVRIDRLAVQLRYEEAAAQRDRLAAFVRAAAR 474


>gi|311032789|ref|ZP_07710879.1| Excinuclease ABC C subunit domain protein [Bacillus sp. m3-13]
          Length = 354

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 5/239 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             +++P  PGVY M D  G+V+YVGK+  L++R++SY   S+ H++++  ++  I ++  
Sbjct: 6   KIKEIPATPGVYLMKDSLGQVIYVGKSKRLRQRVQSYFRESSAHSNKVRKLVKHIRDLEI 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE EALLLE  +I+ ++P++N  ++  ++F Y+ I    K+  L            
Sbjct: 66  IETDTEFEALLLEWQLIQEIRPQYNRQMKTPEAFLYLTIRKVGKLYRLRPTTQPLRGGDG 125

Query: 121 Y-FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           + FGP+ S    +    ++Q    +     S       PCL + +  C G C G  +  +
Sbjct: 126 WSFGPYTS---RKTVSFAIQGLKDVYRLNCSNPAINGSPCLNYSLGLCRGICLGGKAVGE 182

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           Y   V +    L+G +  L E + + M Q     D+E A  +R+ + +L  +    D +
Sbjct: 183 YNAIVEQLIALLNGESAELLEDMQQEMGQLAADLDFERAARYRNCIQSLQALLQKEDVM 241


>gi|71902387|ref|ZP_00684351.1| Excinuclease ABC, C subunit, N-terminal [Xylella fastidiosa Ann-1]
 gi|71727875|gb|EAO30112.1| Excinuclease ABC, C subunit, N-terminal [Xylella fastidiosa Ann-1]
          Length = 147

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 1/126 (0%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +   PGVY+M      +LYVGKA  L+KR+ SY +      R+T M++Q+  +  T+T 
Sbjct: 23  HLSTAPGVYRMYAADDTLLYVGKAGALRKRVASYFNGTPKNTRLTAMLAQVVRMDVTITR 82

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            E EALLLE  +IK L PR+N+LLRDDKS+PY+L+T +   P +  HR    + G YFGP
Sbjct: 83  NEAEALLLENQLIKSLAPRYNVLLRDDKSYPYVLLT-REVWPRIALHRGPQIVPGRYFGP 141

Query: 125 FASVDA 130
           +  V A
Sbjct: 142 YPGVTA 147


>gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM
           43833]
 gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM
           43833]
          Length = 574

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 2/235 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY   D  G  LYVGK+ NL+ R++SY  ++    RI  MI     +R  V
Sbjct: 214 AEGVPAAPGVYVFEDAKGEALYVGKSTNLRNRVRSYFTASEARPRIREMIGIAERVRTIV 273

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +EA + E  +I   KPR+N   R  +   ++ +T     P L   R+     G+Y 
Sbjct: 274 CATALEAEIRELRLIAATKPRYNRRSRFPERAVWLKLT-DEPFPRLSIVREVKDDGGAYL 332

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181
           GPF S  A +    +L  T  LR C + +     RP C L +I +C  PC G  S E+Y 
Sbjct: 333 GPFGSARAADDARTALHETLPLRRCTERLGPRARRPACALAEIGKCGAPCEGRESREEYA 392

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                A++ +      +   +   M +   ++ +E A + RDRLAA         
Sbjct: 393 RHAALARRAMEQDAGMVFSAMEARMRRLADQQRFEEAAVERDRLAAFIRAAARMQ 447


>gi|187735731|ref|YP_001877843.1| excinuclease ABC C subunit domain protein [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425783|gb|ACD05062.1| excinuclease ABC C subunit domain protein [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 498

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNN---HTHRITHMISQINNIRFTVTCTEVEALL 71
           M D  G  +YVGKA +L +R+ +Y          H+   +I+ I +  +  T  + EA L
Sbjct: 1   MKDARGNTIYVGKAKDLHRRLGNYFSPTGATLSNHKTRALINAIASFDYFETRNDQEAFL 60

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAV 131
           LE+ +IK+ +P +NI ++DDK +P + I    K+P     R        YFGPF    A+
Sbjct: 61  LESKLIKQYRPHYNIQMKDDKRYPLLKIPKGEKLPRFQLARVRKDDGARYFGPFVHSQAL 120

Query: 132 EKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKF 190
             T   L R F LR+C   +   H  R C    I+ CS PC G IS   Y     +A + 
Sbjct: 121 YATQEWLNRHFRLRTCKTKNPGIHDFRHCHADVIRNCSAPCIGRISINDYNRNFDQAVRL 180

Query: 191 LSGGNHNLK-EKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           L G       +++   M +A  K D+E A   RD    L  +  
Sbjct: 181 LEGTGRKSTLDELTGEMMEAADKLDFERAAYLRDIRDNLVKVLE 224



 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 132/277 (47%), Gaps = 21/277 (7%)

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
           R  T  L   +  +  +K+      L   P  +E +D S++     V  MV         
Sbjct: 230 RKRTPDLPGTVHPEEDMKELGVALGLESPPTIMECFDISNVSSNHIVASMVRFTNGRPDN 289

Query: 410 NQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP------------KKQE 457
             YR++ +    V  Q+D A M  V+ RR+S+++   + +                  + 
Sbjct: 290 KAYRRYRIRT--VDGQNDFASMSEVIRRRYSRILAESDAVASRQADMTLYQWLKKLSAEG 347

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
            +    PD+V++DGGKGQLS+A   L+ + +   + I+ +AK  +     E FF  + + 
Sbjct: 348 KAPIKVPDLVVVDGGKGQLSSALADLEAIGL-GDMPIVGLAKQRE-----EIFFPHQSQP 401

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLLLQSFG 576
           L L      L  +QR+RDEAHRFA   +    RK+   S LD+  G+   +KRLLL+ F 
Sbjct: 402 LCLPHSTGALKLMQRIRDEAHRFANGYNELLYRKRMRESALDDAPGMSASKKRLLLEKFK 461

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +V  I ++ P ++A+I GIS+  A  + N+ + +++ 
Sbjct: 462 SVTAIKKADPASIAAIRGISETWARTLLNYLNSSSNS 498


>gi|315282011|ref|ZP_07870517.1| excinuclease ABC subunit C [Listeria marthii FSL S4-120]
 gi|313614338|gb|EFR87976.1| excinuclease ABC subunit C [Listeria marthii FSL S4-120]
          Length = 181

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 23/197 (11%)

Query: 424 TQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVL 483
             DD A MR V+ RR+ +++K                   PD++++DGGKGQ+ +A+ VL
Sbjct: 1   GPDDYATMREVIRRRYWRVLKEG--------------LPMPDLILIDGGKGQIDSAKDVL 46

Query: 484 -KKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
             +L ++  I +  +AK  K        F    E + L       Y +QR++DE HRFAI
Sbjct: 47  TNELGLD--IPVAGLAKDDKHRTSQ-LLFGDPLEIIPLERNSQEFYLLQRMQDEVHRFAI 103

Query: 543 TTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           T HR+ R K    S LD I G+GP RK+ LL+ FG++K +  +S E +    G+   +A 
Sbjct: 104 TFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLKEASIEEIKEA-GVPLNVAE 162

Query: 602 KIYNH---FHKNTSHTP 615
           +++ H   F++   +T 
Sbjct: 163 EVHKHITAFNEKAKNTE 179


>gi|302874100|ref|YP_003842733.1| Excinuclease ABC C subunit domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689642|ref|ZP_07632088.1| Excinuclease ABC C subunit domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576957|gb|ADL50969.1| Excinuclease ABC C subunit domain protein [Clostridium
           cellulovorans 743B]
          Length = 364

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 150/328 (45%), Gaps = 11/328 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRF 60
             + +P  PGVY M D    ++Y+GK+ NL+ R+ SY   S NH+ ++  ++  + +  +
Sbjct: 6   KIKGLPSVPGVYLMKDSLENIIYIGKSKNLKNRVSSYFQNSKNHSSKVIRLVQNLKDFDY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG- 119
            +T TE EA +LE  +IK +KP +N L++   S+ YI +        +    ++      
Sbjct: 66  IITDTEFEAFILECKLIKEIKPPYNRLMKSPMSYSYIQVALGDNCLDISLKSEAVKDDNC 125

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            YFGP+ S + VE+ I  ++    +   A +    +   C+ + +K C G C  ++S  +
Sbjct: 126 IYFGPYTSRNIVERGILGIKNHLKI---ACTNNSRKGSACINYSLKLCMGMCMNKVSQNQ 182

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS-- 237
           Y+E  ++  + L+G + ++ E++   MN A    D+E+A  +RD ++++++I +  ++  
Sbjct: 183 YIEIYNKILQLLNGSDKSIIEEMNLVMNNAAESFDFETAAKYRDYISSINYILDKKNTVE 242

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
             N+    +     + +  +       +   +  F L           +   +  ++ ++
Sbjct: 243 FMNKNRNIAFIEYLDDSFAKIFLIKGNRIVFSEKFNLNHCHSYELKATIKNNILFYFKEE 302

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGY 325
              E      E  + +L E      Y  
Sbjct: 303 LLQE----PWEINKENLDEAQIIHSYIK 326


>gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B]
 gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus
           11B]
          Length = 566

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 108/233 (46%), Gaps = 2/233 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E++P  PGVY   D  GRVLYVGKA +L++R++SY  +     RI  M+    ++   V
Sbjct: 220 AERLPHAPGVYLFRDRQGRVLYVGKAKDLRQRVRSYFTAAETRGRIVDMLRVAEDVTPIV 279

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             TE+EA + E  +I   KP +N   +  +   ++ +T   + P L           +Y 
Sbjct: 280 CATELEAEIREVRLIAEHKPAYNRRSKFPERTWWVKLT-DERFPRLAVVHTVRNDAATYL 338

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF   ++    + +LQ  F +R C D    R R  PC  F++ RC  PCTG  S + Y 
Sbjct: 339 GPFNVRESALLAVEALQDAFPIRRCPDRLGPRTRRPPCAWFELGRCGAPCTGAQSPDAYR 398

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
             V    + ++     +     R +      + YE A+  RDRL A  H    
Sbjct: 399 SVVAAVHRAMTSDPSEVVAAALRRITPLAAAQRYEEAVPIRDRLVAYLHAVGR 451


>gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
 gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
          Length = 565

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 8/221 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++PE PGVY   D  GR+LYVGKA NLQ R++ ++ +   H  R+  M+S+I  I + VT
Sbjct: 209 RLPEAPGVYLFRDEHGRLLYVGKARNLQARVRQHLTAVEAHPPRLRQMVSEIRQIEWHVT 268

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE+EALL E+ +IK+ +PR+N L R  ++ P++ +      P L            Y+G
Sbjct: 269 ATELEALLEESRLIKQHQPRYNRLQRRYRTRPFLRLALHETPPVLSLTPVLLDDGAEYYG 328

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P        + + +LQ  F L      +       C L   + C+  C    +     E 
Sbjct: 329 PLPGRRQGRRALEALQEIFRLPRQNAHLVLMGR--CPLAGGELCTNACADGEA-----EA 381

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
           V   ++ L GG  +    +   M  A  + ++E+A  +RD+
Sbjct: 382 VACVRRLLRGGCTHPLSWLETQMRAAAARLEFEAAARYRDQ 422


>gi|330885591|gb|EGH19740.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 138

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 60/139 (43%), Positives = 85/139 (61%), Gaps = 3/139 (2%)

Query: 474 GQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-EALVLNMRDPILYFIQR 532
           GQ+S A+ VL +L V + I ++ +AKG  R AG E  ++        L    P L+ IQ+
Sbjct: 1   GQMSMARDVLNELQVPDLI-LLGVAKGTTRKAGFETLYLNDAAHEFTLPGDSPALHLIQQ 59

Query: 533 LRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +RDEAHRFAIT HR RR K    S L+ + G+GP R+R LL+ FG ++ +SR+S + +A 
Sbjct: 60  IRDEAHRFAITGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAK 119

Query: 592 IEGISKKIACKIYNHFHKN 610
             GISKK+A  IY + H  
Sbjct: 120 APGISKKLAESIYANLHSE 138


>gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836]
 gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836]
          Length = 602

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 118/264 (44%), Gaps = 5/264 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY   D  G VLYVGK+ +L+ R++SY  ++    RI  MI   + +R   
Sbjct: 233 AESLPHAPGVYLFTDDRGEVLYVGKSKDLRTRVRSYFTASETRTRIGEMIGIASGVRGIE 292

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +EA + E  +I   KPR+N   +  +   ++ +T     P L   +        Y 
Sbjct: 293 CGTSLEAEVRELRLIAEHKPRYNRRSKFPERQHWLKVTV-EPFPRLSLVKQVRDDDAGYL 351

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH-RTRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF+S    E+ + +L   F +R C D + R  R  PC+L ++ RC  PC G I  + Y 
Sbjct: 352 GPFSSRKTAERAMAALHEAFPIRQCTDRMSRTPRMSPCVLAEMGRCVAPCDGRIDIDGYA 411

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH---IQNHNDSI 238
           EFV   +  L      + E + R ++  +  E +E A +HRDRL A            S+
Sbjct: 412 EFVAGLRTALVADPGPVVEALTRRIDLLSADERFEDAAVHRDRLGAFVRSSARMQRMASV 471

Query: 239 YNRMDCFSLYHNKNLACIQTCFFH 262
               +  +    ++          
Sbjct: 472 TGCAEICAARRTEDGGWELHVIRR 495


>gi|213615666|ref|ZP_03371492.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 155

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 60/150 (40%), Positives = 93/150 (62%), Gaps = 5/150 (3%)

Query: 460 FPSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKG 515
               PDV+++DGGKGQL+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +G
Sbjct: 1   ESKIPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEG 60

Query: 516 EALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQS 574
           E   L    P L+ IQ +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+ 
Sbjct: 61  EGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKY 120

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIY 604
            G ++ +  +S E +A + GIS+ +A KI+
Sbjct: 121 MGGLQGLRNASVEEIAKVPGISQGLAEKIF 150


>gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM
           43043]
 gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM
           43043]
          Length = 590

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 4/265 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY   D  GRVLYVG + +++ R++SY  +     R+  M+   + +   V
Sbjct: 214 ADALPHAPGVYLFKDGDGRVLYVGTSRDIRSRVRSYFTAAEQRSRMADMVRLAHAVTPVV 273

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +EA + E  +I   +PRFN   ++ +   ++ +T   + P L   R      G + 
Sbjct: 274 CQTPLEAQVRELRLIDEHQPRFNRRSKNARRQLWVKLT-SERFPRLSIVRQVRDEGGHHI 332

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF S    +  ++++     LR C   +       C L ++ RC  PCTG  S + Y  
Sbjct: 333 GPFRSRVTAQAAVDAVHEIVPLRQCTQRIT-GTESACALAELGRCGSPCTGAQSRDDYAR 391

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSIYN 240
            V +     SG      +K+   + +   +E +E A   RDR   L     ++   +   
Sbjct: 392 VVADCAALFSGDARGGGDKLRSRLAELAAQERFEDAARVRDRFLHLVRGAARSQRLTPLM 451

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQ 265
           +               +      G+
Sbjct: 452 QARELVAARRGESDGWEIVCIRQGR 476


>gi|187776876|ref|ZP_02993349.1| hypothetical protein CLOSPO_00415 [Clostridium sporogenes ATCC
           15579]
 gi|187775535|gb|EDU39337.1| hypothetical protein CLOSPO_00415 [Clostridium sporogenes ATCC
           15579]
          Length = 365

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 154/371 (41%), Gaps = 15/371 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
            ++ +P+ PG+Y M D    ++YVGK+ NL+KR+ SY   +N+ T ++  ++  I + ++
Sbjct: 6   KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKSNNITSKVEKLVKNIKDFQY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EALLLE   IK +KP++N L+++ + + YI I  + K P +    +       
Sbjct: 66  ICTDTELEALLLECTFIKHIKPQYNRLMKNHERYVYIQINIEDKYPIIKVVSEIIDDDLL 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF S + + K I  L     L  C +  +      C+ + I +C GPC   ISS++Y
Sbjct: 126 YYGPFISYNRILKFIEGLNEILPLIKCNN--YLKHKSTCINYAIGKCEGPCIESISSKQY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238
            ++V +   F  G    +   + + M + +   ++E A I ++ +   S +     +   
Sbjct: 184 KKYVDKVISFFQGEKDLII-LLEKAMIEHSQTLEFEKAKIFKEYIDVFSSVFQEYKHIIP 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            N  + F +         +  F +        T  +   S+    +        FY    
Sbjct: 243 LNNYNKFIIIDATRKNIFKVIFINNHNIEYIDTITIDNISKENLEEYFKNIYLGFY---- 298

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
                L++   +  +++   F             K+ +      +   N      + L  
Sbjct: 299 -----LINYNNKSKNIVNKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLGEKSLKW 353

Query: 359 EISHQMILKDF 369
                  L  F
Sbjct: 354 SNYMIDKLNKF 364


>gi|261314539|ref|ZP_05953736.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10]
 gi|261303565|gb|EEY07062.1| excinuclease ABC subunit C [Brucella pinnipedialis M163/99/10]
          Length = 136

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/134 (52%), Positives = 93/134 (69%), Gaps = 1/134 (0%)

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           + A + +L ++ + + +T I IAKG  R AG E+FF++  +   L  RDP+LYFIQRLRD
Sbjct: 1   MGAVRQILGEMGISDLVTAIGIAKGVDREAGRERFFMEGKQPFTLPPRDPVLYFIQRLRD 60

Query: 536 EAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           EAHRFAI THR RRKK    +PLDEI GIGP RKR LL  FGT K +SR++ E L  I+G
Sbjct: 61  EAHRFAIGTHRARRKKEMVRNPLDEIAGIGPTRKRALLHHFGTAKAVSRAAVEDLMQIDG 120

Query: 595 ISKKIACKIYNHFH 608
           IS+ +A  I++HF 
Sbjct: 121 ISEAMARAIHDHFR 134


>gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547]
 gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus
           sedentarius DSM 20547]
          Length = 584

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY+ LD AG VLYVG A N+++R+  Y  ++    R+  M+     +   V  
Sbjct: 223 DLPEAPGVYRFLDAAGEVLYVGTAVNIRRRVSQYFTASETRRRMGDMVRLAERVVPIVCP 282

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           T +EA + E  +I   +PR+N       S PY+ +T     P L   R  S    ++ GP
Sbjct: 283 TALEASVRELRLIAEHRPRYNRAGLKGASLPYVRLT-DEPFPRLSVVRAVSDDAATHIGP 341

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFR----HRTRPCLLFQIKRCSGPCTGEISSEKY 180
           F S  A ++ + +L     LR C   +        T  C L  + RC  PCTG +S  +Y
Sbjct: 342 FPSASAAKEAVQALHSALPLRQCTSRITEASAARATTACALADLGRCGAPCTGAMSRSEY 401

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223
            E    A+  L+  +    + +A  M++    E YE A + RD
Sbjct: 402 AEVTTRARAALATDHREAWQALAARMDELAGAERYEEARVLRD 444


>gi|88861541|ref|ZP_01136144.1| excinuclease ABC, C subunit [Pseudoalteromonas tunicata D2]
 gi|88816458|gb|EAR26310.1| excinuclease ABC, C subunit [Pseudoalteromonas tunicata D2]
          Length = 256

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 85/260 (32%), Positives = 134/260 (51%), Gaps = 24/260 (9%)

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
              + +K   +     +L D   K  L  IP  IE +D S+I G + V  MV+  +    
Sbjct: 14  KNLYNEKKERKTKKLSVLIDLKNKLNLKKIPFHIECFDISNIQGKNTVASMVLFKDGYPN 73

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
           K +YRK+ +    V   DD   MR V+ RR++++I+    L              PD++I
Sbjct: 74  KKEYRKYKIRS--VDKPDDFESMREVVSRRYTRIIREGNPL--------------PDLII 117

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGGKGQLS+A  +LK+L V N+I II IAK  +     E +F      ++L  +   L 
Sbjct: 118 IDGGKGQLSSACDILKELKVYNKINIIGIAKKLE-----EIYFPNDSIPVLLGKKSEQLK 172

Query: 529 FIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            IQ +R+EAHRFAI  H++ R      S L+EI GIG   +  L+++FG+++ I ++  +
Sbjct: 173 LIQNIRNEAHRFAINYHKQLRSNTFIQSELEEIYGIGDKTRGKLIRAFGSIENIKKADRK 232

Query: 588 TLASIEGISKKIACKIYNHF 607
            L  + G  K+   KI  ++
Sbjct: 233 DLIKLVG--KEKTEKIIRYY 250


>gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 580

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 126/339 (37%), Gaps = 4/339 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY   D   RVLY+G + +L+ R+++Y  ++    R+  M+     ++   
Sbjct: 239 AEDLPHAPGVYLFKDSQDRVLYIGTSKDLRTRVRTYFTASETRSRMGEMVGLAATVQGIE 298

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +EA + E  +I   KP +N   R  +   ++ +T +   P L   +        Y 
Sbjct: 299 CATALEAGVRELRLIGEHKPPYNRRSRRPEKMHFVKLT-QEPWPRLSLVKRVLDDDADYL 357

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF S    E  + +L  TF +R C+D      R  PC+L ++ RC  PC   + +E Y 
Sbjct: 358 GPFGSKKVAENALQALHDTFPIRQCSDRLPLLPRKTPCVLAELHRCLSPCDQSVPAETYA 417

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIY 239
             V   ++ +      + E I   +     +E +E A +HRDRL +           S  
Sbjct: 418 TLVSRVRESILHRPDEVVETITERLTGLAEQERFEEAAVHRDRLTSYLRAAARTQRLSAL 477

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPC 299
            R+   +    ++           G+         + ++ +  A +            P 
Sbjct: 478 TRLPDLTAIRREDDGRWAVHVVRHGRLAAAGVIPREANAHAYVADLQLSAETVLDAPGPV 537

Query: 300 PENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKR 338
           P       E     L        +             +R
Sbjct: 538 PAASAEETELVLRWLESPGVRLAHIEGEWTCPIDGAGRR 576


>gi|257469478|ref|ZP_05633570.1| excinuclease ABC subunit C [Fusobacterium ulcerans ATCC 49185]
          Length = 260

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 136/283 (48%), Gaps = 26/283 (9%)

Query: 328 KITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDN 387
                 +  +++++E   +N  R        +   +  L       +L   P++IE +D 
Sbjct: 2   FFFPKIKSRRKELLEMGELNLIRDIENHYRKKSVIEEGLYKIYTTLSLKRYPRKIECFDI 61

Query: 388 SHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEE 447
           S+I G  AV  M V  E    K  YRKF +   D    DD AMMR V+ RR+ +L +NE 
Sbjct: 62  SNIQGKDAVASMSVSVEGKASKQDYRKFKITCKDTP--DDFAMMREVITRRYGKLPENE- 118

Query: 448 NLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGM 507
                          +PDV+++DGG GQ++AA  V ++L  +    ++S+AK  +     
Sbjct: 119 ---------------FPDVILIDGGLGQINAAGEVFRELGKDGISDLLSLAKRDE----- 158

Query: 508 EKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPL 566
           E +   +    V +     L   QR+RDEAHRF IT HRK R K    S LDE+ GIG  
Sbjct: 159 EVYKYGENIPYVFSKDQEALKIFQRVRDEAHRFGITYHRKLRSKRVLSSELDEVEGIGEK 218

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           RK +LL+ FG+V  I++   E+L+    + + +A  I     K
Sbjct: 219 RKAVLLKEFGSVSKIAKEDIESLSRF--VPRNVAENILEKLRK 259


>gi|119717352|ref|YP_924317.1| hypothetical protein Noca_3128 [Nocardioides sp. JS614]
 gi|119538013|gb|ABL82630.1| DNA polymerase III, epsilon subunit [Nocardioides sp. JS614]
          Length = 601

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 106/238 (44%), Gaps = 5/238 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY   D   +VLYVG + +L+ R++SY  ++    R+  M+     +    
Sbjct: 225 AEGLPHAPGVYLFRDEQAQVLYVGTSRDLRTRVRSYFTASETRSRMGEMVGIATVVDAIE 284

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +EA + E  +I   KP++N   R+     +I +T +   P L   R        Y 
Sbjct: 285 CATALEAEVRELRLIAEHKPKYNRRSRNPSKVHFIKLT-REPWPRLSLVRRVLDDDADYL 343

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH----RTRPCLLFQIKRCSGPCTGEISSE 178
           GPF+S    EK + +L  TF +R C D +          PC+L ++ RC  PC G +   
Sbjct: 344 GPFSSKKTAEKCLAALHETFPVRQCTDRLPGDPAAAGRAPCVLAEMGRCLAPCDGSVDHA 403

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            Y   VH+ +  L      + E I   M      E +E A +HRDRLAA         
Sbjct: 404 TYAAVVHQLRDTLLRRPDEVVETINAKMGALAADERFEEAGVHRDRLAAFVRAAARTQ 461


>gi|973304|gb|AAC44002.1| exinuclease ABC subunit C [Rhodobacter sphaeroides]
          Length = 128

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/129 (46%), Positives = 85/129 (65%), Gaps = 2/129 (1%)

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           L++L V++ +  I +AKG  R AG E+F         L M DP+LYF+QRLRDEAHR+AI
Sbjct: 1   LQELGVDD-VPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAHRWAI 59

Query: 543 TTHRKRRKKAAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
             HR +R KA   +PLDEI G+G  RKR LL  FG+ K ++R+    L ++EGIS+ +A 
Sbjct: 60  GAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVPDLCAVEGISETMAQ 119

Query: 602 KIYNHFHKN 610
            I+++FH +
Sbjct: 120 SIHDYFHGS 128


>gi|218459312|ref|ZP_03499403.1| excinuclease ABC subunit C [Rhizobium etli Kim 5]
          Length = 124

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 87/122 (71%), Gaps = 1/122 (0%)

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
           +  I IAKG  R AG E+FF    E+  L  RDP+LYFIQR+RDEAHRFAI +HR RRKK
Sbjct: 2   VMAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPVLYFIQRMRDEAHRFAIGSHRARRKK 61

Query: 552 -AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
               +PLDEI GIGP RKR LLQ FGT K +SR++   L ++EGIS+ +A ++YNHFH +
Sbjct: 62  EMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAALSDLMAVEGISEAVAKQVYNHFHDD 121

Query: 611 TS 612
            +
Sbjct: 122 AA 123


>gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 574

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 110/266 (41%), Gaps = 4/266 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY   D  G  LYVGK+ NL+ R++SY  +     RI  MI  +  +R   
Sbjct: 214 ADGVPTGPGVYVFEDERGDPLYVGKSTNLRNRVRSYFTAGETRPRIREMIGIVERVRPIA 273

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +EA + E  +I   KPR+N   R  +   ++ +T     P L   R+       Y 
Sbjct: 274 CATALEAEVRELRLIGSAKPRYNRRSRFPEKMVWLKLT-DEPFPRLSIVREVKDDDAGYL 332

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVF-RHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF S  A E    +L     LR C + +  R R   C L  + RC  PC G  S+E+Y 
Sbjct: 333 GPFTSTRAAEDARTALHEAVPLRQCTEKITSRTRRSACALAGLGRCGAPCEGRQSAEEYG 392

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SIY 239
                A++ +      +   +   M +  L++ YE A   RDRLA+           S  
Sbjct: 393 LHTAAARRAMELDVTPVFSAVQARMERLALEQRYEEAAADRDRLASYVRASARMQRLSAL 452

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQ 265
             +              Q     +G+
Sbjct: 453 TSIPQMVAASPAAGGGWQIHVIRYGR 478


>gi|213422192|ref|ZP_03355258.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 311

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 95/319 (29%), Positives = 158/319 (49%), Gaps = 26/319 (8%)

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD--- 296
           + +D   +  +  +AC+   F   G+  G+ ++F K    +   +++  F+ QFY     
Sbjct: 9   DDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQ 68

Query: 297 -KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQK 355
            +  P  ILL     + +LL  S  +  G ++ +    +G++ + ++ A  NA  +   K
Sbjct: 69  MRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGDRARYLKLARTNAATALVTK 128

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
           LS + +    L        LP I  R+E +D SH MG   V   VV   NG ++ +YR++
Sbjct: 129 LSQQSTITQRLTALATVLKLPAIK-RMECFDISHTMGEQTVASCVVFDANGPLRAEYRRY 187

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
           N+    +   DD A M  VL RR+ + I+  +                PDV+++DGGKGQ
Sbjct: 188 NI--AGITPGDDYAAMNQVLRRRYGKAIEESK---------------IPDVILIDGGKGQ 230

Query: 476 LSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQ 531
           L+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ
Sbjct: 231 LAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQ 290

Query: 532 RLRDEAHRFAITTHRKRRK 550
            +RDE+H  AI  HRK+R+
Sbjct: 291 HIRDESHDHAIGGHRKKRR 309


>gi|170759080|ref|YP_001788524.1| GIY-YIG domain-containing protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406069|gb|ACA54480.1| GIY-YIG domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 365

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 152/371 (40%), Gaps = 15/371 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            ++ +P+ PG+Y M D    ++YVGK+ NL+KR+ SY    NN T +I  +I  I + ++
Sbjct: 6   KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKQNNATSKIEKLIKNIKDFQY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EALLLE   IK +KP++N L+++ + + YI I  K + P +    +       
Sbjct: 66  ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYTYIQINIKDQYPIIKVAPEIKDDNSL 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF + + + K +  L     L  C +  +      C+ + I +C GPC   ISS++Y
Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKQY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238
            +++ +   F  G    +   + + M +     ++E A I +D +   + +     +   
Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSVFQEYKHIVR 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
            N  + F +         +  F          T  + + S+ +  +         Y    
Sbjct: 243 LNNYNKFIIVDITRKNISKVIFIDNHNIEYIDTINIDSMSKKSLEE---------YFKNI 293

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
                L+S   E  +++   F             K+ +      +   N      + L  
Sbjct: 294 YLRFCLISHNKETKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEESLKW 353

Query: 359 EISHQMILKDF 369
                  L  F
Sbjct: 354 SNYIIDKLNKF 364


>gi|317063722|ref|ZP_07928207.1| excinuclease ABC subunit C [Fusobacterium ulcerans ATCC 49185]
 gi|313689398|gb|EFS26233.1| excinuclease ABC subunit C [Fusobacterium ulcerans ATCC 49185]
          Length = 244

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 88/268 (32%), Positives = 129/268 (48%), Gaps = 26/268 (9%)

Query: 343 QALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVV 402
              +N  R        +   +  L       +L   P++IE +D S+I G  AV  M V 
Sbjct: 1   MGELNLIRDIENHYRKKSVIEEGLYKIYTTLSLKRYPRKIECFDISNIQGKDAVASMSVS 60

Query: 403 GENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPS 462
            E    K  YRKF +   D    DD AMMR V+ RR+ +L +NE                
Sbjct: 61  VEGKASKQDYRKFKITCKDTP--DDFAMMREVITRRYGKLPENE---------------- 102

Query: 463 WPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNM 522
           +PDV+++DGG GQ++AA  V ++L  +    ++S+AK  +     E +   +    V + 
Sbjct: 103 FPDVILIDGGLGQINAAGEVFRELGKDGISDLLSLAKRDE-----EVYKYGENIPYVFSK 157

Query: 523 RDPILYFIQRLRDEAHRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMI 581
               L   QR+RDEAHRF IT HRK R K    S LDE+ GIG  RK +LL+ FG+V  I
Sbjct: 158 DQEALKIFQRVRDEAHRFGITYHRKLRSKRVLSSELDEVEGIGEKRKAVLLKEFGSVSKI 217

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHK 609
           ++   E+L+    + + +A  I     K
Sbjct: 218 AKEDIESLSRF--VPRNVAENILEKLRK 243


>gi|88861289|ref|ZP_01135920.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2]
 gi|88816668|gb|EAR26492.1| excinuclease ABC subunit C [Pseudoalteromonas tunicata D2]
          Length = 115

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/109 (48%), Positives = 74/109 (67%), Gaps = 1/109 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+MLD    V+YVGKA NL+KR+ SY  +N    +   ++  I+ I  T+
Sbjct: 8   LKTLSSEPGVYRMLDKDDHVIYVGKAKNLKKRVSSYFRANIPESKTRALVKNIHQIEVTL 67

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKH 111
           T TE EALLLE N+IK+  PR+NILLRDDKS+PYIL+T +H+ P +  +
Sbjct: 68  TNTETEALLLENNLIKQYMPRYNILLRDDKSYPYILVT-EHRHPRIAFY 115


>gi|289809921|ref|ZP_06540550.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 147

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 89/142 (62%), Gaps = 5/142 (3%)

Query: 468 ILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMR 523
           ++DGGKGQL+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +GE   L   
Sbjct: 1   MIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPD 60

Query: 524 DPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
            P L+ IQ +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ + 
Sbjct: 61  SPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLR 120

Query: 583 RSSPETLASIEGISKKIACKIY 604
            +S E +A + GIS+ +A KI+
Sbjct: 121 NASVEEIAKVPGISQGLAEKIF 142


>gi|226950632|ref|YP_002805723.1| GIY-YIG domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226841645|gb|ACO84311.1| GIY-YIG domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 365

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 79/350 (22%), Positives = 154/350 (44%), Gaps = 8/350 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            ++ +P+ PG+Y M D    ++YVGK+ NL+KR+ SY    NN T +I  +I  I + ++
Sbjct: 6   KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVCSYFIKQNNATSKIEKLIKNIKDFQY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EALLLE   IK +KP++N L+++ + + YI I  K + P +    +       
Sbjct: 66  ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVASEIKDDNYL 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF + + + K +  L     L  C +  +      C+ + I +C GPC   ISS+ Y
Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKHY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238
            +++ +   F +G    +   + + M +     ++E A + +D +   + +     +   
Sbjct: 184 KKYIDKVISFFNGEKDLII-LLEKYMREYCETLEFEKAKLFKDYIDVFNSVFQEYKHIVR 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296
            N  + F +         +  F +        T  +   S+    +       +FY  + 
Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDIMSKKNLEEYFKDIYLRFYLISH 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
               +NI+  E  +   ++      +    V   + +      + E++L 
Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEKSLK 352


>gi|168179147|ref|ZP_02613811.1| GIY-YIG domain protein [Clostridium botulinum NCTC 2916]
 gi|182670128|gb|EDT82104.1| GIY-YIG domain protein [Clostridium botulinum NCTC 2916]
          Length = 365

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 154/350 (44%), Gaps = 8/350 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            ++ +P+ PG+Y M D    ++YVGK+ NL+KR+ SY    NN T +I  +I  I + ++
Sbjct: 6   KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVCSYFIKQNNATSKIEKLIKNIKDFQY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EALLLE   IK +KP++N L+++ + + YI I  K + P +    +       
Sbjct: 66  ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVASEIKDDNYL 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF + + + K +  L     L  C +  +      C+ + I +C GPC   ISS++Y
Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKQY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238
            +++ +   F  G    +   + + M +     ++E A I +D +   + +     +   
Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSVFQEYKHIVR 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296
            N  + F +         +  F +        T  +   S+    +       +FY  + 
Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDIMSKKNLEEYFKDIYLRFYLISH 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
               +NI+  E  +   ++      +    V   + +      + E++L 
Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIKQDDNVCDLEEKSLK 352


>gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
           15272]
 gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
           15272]
          Length = 569

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 2/229 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++++P   GVY   D A  VLYVG + +L++R+++Y   +    R+  M+     I   V
Sbjct: 227 ADKVPNAAGVYLFRDRADDVLYVGTSADLRRRVRTYFTRSETRSRMGEMVMLAERIETVV 286

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +EA + E  +I   +P +N   +D     ++ +T +   P +            Y 
Sbjct: 287 CATALEARVRELRLIAHHRPPYNRRSKDPARTTWVKLT-QEPWPRISLVPQVRDDGADYI 345

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEKYM 181
           GPF S     +  +++  TF +R C D + R   R PC+L ++ RC  PC G    E Y 
Sbjct: 346 GPFRSRAEAVEATHAVHDTFAIRQCTDRMGRTSRRSPCVLAEMDRCLSPCDGSADPEVYA 405

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
             V   +  L+     + ++I   M      E +E A + RDRL AL  
Sbjct: 406 IEVGRVRSALTADPVEVVDRIGDRMRDLAADERFEDAALWRDRLQALVR 454


>gi|148381152|ref|YP_001255693.1| GIY-YIG domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932775|ref|YP_001385527.1| GIY-YIG domain-containing protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936066|ref|YP_001388933.1| GIY-YIG domain-containing protein [Clostridium botulinum A str.
           Hall]
 gi|148290636|emb|CAL84765.1| putative nuclease [Clostridium botulinum A str. ATCC 3502]
 gi|152928819|gb|ABS34319.1| GIY-YIG domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931980|gb|ABS37479.1| GIY-YIG domain protein [Clostridium botulinum A str. Hall]
          Length = 365

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 154/350 (44%), Gaps = 8/350 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            ++ +P+ PG+Y M D    ++YVGK+ NL+KR+ SY    NN T +I  +I  I + ++
Sbjct: 6   KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKQNNATSKIEKLIKNIKDFQY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EALLLE   IK +KP++N L+++ + + YI I  K + P +    +       
Sbjct: 66  ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVASEIKDDNYL 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF + + + K +  L     L  C +  +      C+ + I +C GPC   ISS++Y
Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKQY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238
            +++ +   F  G    +   + + M +     ++E A I +D +   + +     +   
Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSVFQEYKHIVR 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296
            N  + F +         +  F +        T  +   S+    +       +FY  + 
Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDIMSKKNLEEYFKDIYLRFYLISH 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
               +NI+  E  +   ++      +    V   + +      + E++L 
Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEKSLK 352


>gi|254445701|ref|ZP_05059177.1| UvrC Helix-hairpin-helix N-terminal domain family [Verrucomicrobiae
           bacterium DG1235]
 gi|198260009|gb|EDY84317.1| UvrC Helix-hairpin-helix N-terminal domain family [Verrucomicrobiae
           bacterium DG1235]
          Length = 472

 Score =  186 bits (472), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 129/300 (43%), Gaps = 25/300 (8%)

Query: 312 TSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTK 371
             L E    +      +     +     +             + L    S +  LK   K
Sbjct: 193 DELKEEMAREATERNYEKAAALRDIVFALEASLKKTRK--FERDLPVRESAEETLKLLQK 250

Query: 372 KFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
           + ++  +PK IE +D SHI G   V  M+   +    K  YR+F +     K  DD   M
Sbjct: 251 ELSMELVPKTIECFDISHISGTFVVASMIQFVDGRPNKAGYRRFKIKS--FKGNDDFRSM 308

Query: 432 RMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENR 491
             V+ RR+ +L K  +               +P+++++DGG+GQ+ AA       ++E  
Sbjct: 309 EEVVGRRYRRLHKEGKA--------------FPELIVIDGGRGQVGAAVKSFLMQDLE-P 353

Query: 492 ITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKK 551
             +I +AK  +        F  +   L L ++   L  +QR RDEAHRFA T +   R K
Sbjct: 354 PELIGLAKKHET-----IIFPDERPPLRLPLKHAGLQLLQRCRDEAHRFANTFNADLRSK 408

Query: 552 AAY-SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
               S LD+  G+GP ++  LL  FG+++ +  +S   L S++GI  + A ++     ++
Sbjct: 409 RIRESILDDFTGLGPKKRNSLLDEFGSIERLKSASITELRSVDGIGLETATRLKIFLDEH 468



 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 4/226 (1%)

Query: 13  YQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN---HTHRITHMISQINNIRFTVTCTEVEA 69
           Y M D  G V+YVGKA +L+KR+ SY  ++    H  +I  ++  I +  +    +E EA
Sbjct: 2   YLMKDRLGSVIYVGKAKDLKKRVSSYFQASKKFTHQPKIRALVQMIRDFEYIEVKSEPEA 61

Query: 70  LLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVD 129
           LLLE  +IK+ KP++N    DDK F  + +    ++P     R        YFGPFA  +
Sbjct: 62  LLLEGKLIKKWKPKYNTDFVDDKRFLLVRVDVTRELPRFALARFKKEDGARYFGPFAHAN 121

Query: 130 AVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC-TGEISSEKYMEFVHEAK 188
            + KT+  ++R F +     +  R       L+   R         ++ E+Y E V EA 
Sbjct: 122 HIRKTLTEMRRRFGILLGDATPKREEDGQFRLYDDVRSEIYGHENVVTVEEYQERVEEAC 181

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
           +FL G +    +++   M +   + +YE A   RD + AL      
Sbjct: 182 EFLQGKSREWLDELKEEMAREATERNYEKAAALRDIVFALEASLKK 227


>gi|153938533|ref|YP_001392555.1| GIY-YIG domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152934429|gb|ABS39927.1| GIY-YIG domain protein [Clostridium botulinum F str. Langeland]
 gi|295320541|gb|ADG00919.1| GIY-YIG domain protein [Clostridium botulinum F str. 230613]
          Length = 365

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 154/350 (44%), Gaps = 8/350 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            ++ +P+ PG+Y M D    ++YVGK+ NL+KR+ SY    NN T +I  +I  I + ++
Sbjct: 6   KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKQNNATSKIEKLIKNIKDFQY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EALLLE   IK +KP++N L+++ + + YI I  K + P +    +       
Sbjct: 66  ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVASEIKDDNYL 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF + + + K +  L     L  C +  +      C+ + I +C GPC   ISS++Y
Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKQY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238
            +++ +   F  G    +   + + M +     ++E A I +D +   + I     +   
Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSIFQEYRHIVR 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296
            N  + F +         +  F +        T  +   S+    +       +FY  + 
Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDIMSKKNLEEYFKDIYLRFYLISH 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
               +NI+  E  +   ++      +    V   + +      + E++L 
Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEKSLK 352


>gi|168183520|ref|ZP_02618184.1| GIY-YIG domain protein [Clostridium botulinum Bf]
 gi|237796659|ref|YP_002864211.1| GIY-YIG domain-containing protein [Clostridium botulinum Ba4 str.
           657]
 gi|182673340|gb|EDT85301.1| GIY-YIG domain protein [Clostridium botulinum Bf]
 gi|229262167|gb|ACQ53200.1| GIY-YIG domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 365

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 156/350 (44%), Gaps = 8/350 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            ++ +P+ PG+Y M D    ++YVGK+ NL+KR+ SY    NN T +I  +I  I + ++
Sbjct: 6   KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKQNNATSKIEKLIKNIKDFQY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EALLLE   IK +KP++N L+++ + + YI I  K + P +    +       
Sbjct: 66  ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVAPEIKDDNFL 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF + + + K +  L     L  C + +    T  C+ + I +C GPC   ISS++Y
Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNNHLKHKST--CINYAIGKCKGPCIENISSKQY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238
            +++ +   F  G    +   + + M +     ++E A I +D +   + +     +   
Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSVFQEYKHIVR 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296
            N  + F +         +  F +        T  + + S+    +       +FY  + 
Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDSMSKKNLEEYFKDIYLRFYLISH 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
               +NI+  E  +   ++      +    V   + +      + E++L 
Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEKSLK 352


>gi|170756897|ref|YP_001782843.1| GIY-YIG domain-containing protein [Clostridium botulinum B1 str.
           Okra]
 gi|169122109|gb|ACA45945.1| GIY-YIG domain protein [Clostridium botulinum B1 str. Okra]
          Length = 365

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 154/350 (44%), Gaps = 8/350 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRF 60
            ++ +P+ PG+Y M D    ++YVGK+ NL+KR+ SY    NN T +I  +I  I + ++
Sbjct: 6   KAKLLPQSPGIYIMRDSLSNIIYVGKSKNLRKRVYSYFIKQNNATSKIEKLIKNIKDFQY 65

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE+EALLLE   IK +KP++N L+++ + + YI I  K + P +    +       
Sbjct: 66  ICTDTELEALLLECTFIKCIKPQYNRLMKNHERYIYIQINIKDQYPIIKVAWEIKDDNYL 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+GPF + + + K +  L     L  C +  +      C+ + I +C GPC   ISS++Y
Sbjct: 126 YYGPFINYNRILKFVEGLNEILPLIKCNN--YLKHKSTCINYAIGKCKGPCIENISSKQY 183

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN--HNDSI 238
            +++ +   F  G    +   + + M +     ++E A I +D +   + +     +   
Sbjct: 184 KKYIDKVISFFQGEKDLII-LLEKYMREYCETLEFEKAKIFKDYIDVFNSVFQEYRHIVR 242

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFY--TD 296
            N  + F +         +  F +        T  +   S+    +       +FY  + 
Sbjct: 243 LNNYNKFIIVDITRKNISKVIFINNHNIEYIDTINIDIMSKKNLEEYFKDIYLRFYLISH 302

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALI 346
               +NI+  E  +   ++      +    V   + +      + E++L 
Sbjct: 303 NKESKNIVSKEFIDYVHIIFSYINMKKEDIVYSNIEQDDNVCDLEEKSLK 352


>gi|309812650|ref|ZP_07706394.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
 gi|308433345|gb|EFP57233.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
          Length = 608

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 105/262 (40%), Gaps = 5/262 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY   +  G+ LYVG + NL+ R++SY  ++     +  M+     +    
Sbjct: 223 ADGLPAEPGVYVFENEDGKPLYVGTSGNLRTRVRSYFTASEKRREMGLMVDLAARVTPIP 282

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +EA + E  +I   +PRFN      +   ++ IT   K P L   R+    + +Y 
Sbjct: 283 CATSLEAHVREIRLIAEHRPRFNRRSSRPEKIAWLKIT-DEKFPRLSVVREQRADEATYL 341

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF ++ A     +++     +R C   +       C+L ++ RC  PC G I+   Y++
Sbjct: 342 GPFRTMVAARLARDAVHDVRRIRQCTTPIRAKGGTACVLAEMDRCDAPCIGGITQRDYLD 401

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAI----IHRDRLAALSHIQNHNDSI 238
            V   ++ L     ++   +   + +   +E +E A        + L  L   Q     +
Sbjct: 402 LVSRLRQELLNEPGSIVNDVEARLARLAGQERFEEARAGRDALIELLRGLDRHQRRAPIV 461

Query: 239 YNRMDCFSLYHNKNLACIQTCF 260
            N     +              
Sbjct: 462 NNPHLMAARPRRGGGWEFAVIR 483


>gi|326791317|ref|YP_004309138.1| excinuclease ABC C subunit domain protein [Clostridium lentocellum
           DSM 5427]
 gi|326542081|gb|ADZ83940.1| Excinuclease ABC C subunit domain protein [Clostridium lentocellum
           DSM 5427]
          Length = 355

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 6/237 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
            ++ +   PGVY M D  G V+YVGK+ +L+ R+ SY  S  H   RI  M++ I+    
Sbjct: 9   QAKNLSLTPGVYLMKDREGYVIYVGKSKHLKNRVSSYFGSLKHVKPRIKRMVAAIDTFEC 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++AL+LE  +IK+ KP +N LL+++K + YI +  +  + ++    +     G 
Sbjct: 69  KYTDTELDALILECVLIKQYKPLYNRLLKNEKKYRYIHVGIEESLGSVTAVYEKGN-TGL 127

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFGP+     +   + +L+  F L SC           CL +++KRC GPC      E  
Sbjct: 128 YFGPYDQSADLLTAVEALRNYFRLPSCKQG---EGVEGCLTYKLKRCVGPCQDSNREEHQ 184

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
                    FL G N          M +A+ + D+  AII+R    AL  +    ++
Sbjct: 185 KALKS-LVLFLEGENQLPLVFYETAMKEASEQLDFNKAIIYRQNWYALKRLGYRQEA 240


>gi|71893421|ref|YP_278867.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae J]
 gi|72080408|ref|YP_287466.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae 7448]
 gi|71851548|gb|AAZ44156.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae J]
 gi|71913532|gb|AAZ53443.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae 7448]
          Length = 505

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 96/541 (17%), Positives = 194/541 (35%), Gaps = 70/541 (12%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P   GVY+  D    +LYVGKA NL+ R+  Y     ++++   +I +   I++ +   
Sbjct: 2   LPNQVGVYRFYDEKNTLLYVGKAKNLKSRMNQYAKGATNSYKTEVLIRKTKEIKYDILQN 61

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQGSYF 122
           E EAL+LE  +I + +P +NI L+DD+++PYI +  + K+         R   +    ++
Sbjct: 62  ETEALILEKKIISKFQPIYNIKLKDDQNYPYIKLELEKKLNIELVYKISRSKKSKNIFFY 121

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +  +       L+     +     V        L  +   C               
Sbjct: 122 GPFLNKSSALVLKKILENIVLYKKGQQIVQSEPE--ILNQKFFLCKKILQE--------- 170

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD-----RLAALSHIQNHNDS 237
                          L     + + +A     +E A  +       +   +       ++
Sbjct: 171 -------------QKLISFCEQKLEKAKKNNQFELANEYHKALIALKKTKIEQQNIELNN 217

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           + N    +     +N   I   F+  G       F +      T  ++L  FL  +Y   
Sbjct: 218 LKNIDFLYYSEIGENNLVISFAFYRNGVFLSNKNFIIDIILNYT--EVLINFLNNYYKIN 275

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ +++     + +       +    K+ I + K  + + I+     N     +    
Sbjct: 276 IYPDELVVKNFWPKNA-------EFLDPKINIKIGKSLKYKHILNTLAKNHQDFISHNFD 328

Query: 358 TEISHQMILK---DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            EI  ++  +   +  K        ++I   D S++        ++      + +N  R 
Sbjct: 329 QEIKKKIKNQKILELVKTSLKIENVEKIMAIDCSNLESNYPTTGIIFYINGIYERNYNRF 388

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           FN         +        + + F + IKN + L              PD++++DGG  
Sbjct: 389 FNYRGTKKGDTN-------YMRQGFEKYIKNPKFLK-------------PDLILVDGGIQ 428

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++    +L+K + E  I I  + K  +     EK     G+ + L     +L F   ++
Sbjct: 429 QINLIIEILRKNHFE--IPIFGMVKNKRHKT--EKIIDLNGKKINLAQ--EVLNFFALIQ 482

Query: 535 D 535
           +
Sbjct: 483 E 483


>gi|322378909|ref|ZP_08053325.1| excinuclease ABC subunit C [Helicobacter suis HS1]
 gi|321148651|gb|EFX43135.1| excinuclease ABC subunit C [Helicobacter suis HS1]
          Length = 422

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 14/240 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQIN 56
            +P   G+Y   D   R+LYVGKA NLQKRI SY          +  ++ R+  M++QI 
Sbjct: 13  NLPTHSGIYLYFDTKHRLLYVGKAKNLQKRILSYFKIKDGQVLPNPKNSLRVQRMVAQIA 72

Query: 57  NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116
           +I+      E EALLLE   IK  +P++NILL+DDK++PYI +      P     R    
Sbjct: 73  SIQTQFAANEEEALLLENQTIKAYQPKYNILLKDDKTYPYICVDLTKPYPFFALARKV-K 131

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
              + FGPF+S       + SL     L            + C+ ++++RC  PC G+I+
Sbjct: 132 PGYTGFGPFSSG--ARDILESLLEFVPLVQSK--SCLQGKKACIFYEMRRCKAPCEGKIT 187

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            + Y   V +A   L+  +  +   I + M    L+E +E A I+RD L  +  +   ++
Sbjct: 188 QQDYALLVEQALALLTDKSKLV-ALIEQRMRTLALQERFEEAAIYRDHLQKIQALLKRSE 246



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 31/204 (15%)

Query: 356 LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKF 415
             +E S + ++      F L  +P+RIEI+D SH      VG MVV     ++KN YR++
Sbjct: 243 KRSEQSEERLIHALQTLFKLQKLPQRIEIFDASHHAQTHCVGGMVVFSHGKWLKNAYRRY 302

Query: 416 NLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQ 475
                 ++ +D+ A MR +LERR   L +                   PD+ +LDGG+ Q
Sbjct: 303 -----LLQGKDEYAQMREMLERRLKNLKE------------------MPDLWLLDGGRAQ 339

Query: 476 LSAAQGVLKKLNVENRITIISIAK-----GPKRSAGM-EKFFVKKGEALVLNMRDPILYF 529
           +  A+ +LK    +  I ++ IAK       KR+ G  E    +  +   L  +D  L F
Sbjct: 340 VCLAEDILKAAGFD--IKVLGIAKAKVRGKAKRARGDVEDVIYESNQTWHLKAQDSCLQF 397

Query: 530 IQRLRDEAHRFAITTHRKRRKKAA 553
           +Q+LRDEAHRFAI+ HR R+ KA 
Sbjct: 398 LQKLRDEAHRFAISYHRLRKLKAL 421


>gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX]
 gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 590

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/277 (26%), Positives = 119/277 (42%), Gaps = 3/277 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +PE PGVY   D +G  LYVGK+ NL+ R++SY  +     RI  M+ +   ++  V
Sbjct: 244 ADGIPEAPGVYVFEDASGDPLYVGKSVNLRARVRSYFTAAEQRGRIKEMVGRAVRVQPIV 303

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T VEA + E  +I   KP +N   R  +  P+++IT   + P L   R          
Sbjct: 304 CATAVEAEVRELRLIAARKPPYNRRSRHPERAPWLVIT-AEEFPRLAVVRQVGDNYLGAL 362

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF+S        ++L + F +R C   +   R    C L ++ RC  PCTG  S+ +Y 
Sbjct: 363 GPFSSSRTALLARDALHQAFPVRQCTHRITPPRPDAACALAEMGRCGAPCTGAQSAAEYA 422

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND-SIYN 240
             V    + ++G    +   +   ++    +  YE A +HRDRL+A              
Sbjct: 423 AHVQAVAQAMTGDVSAVVAALTARIDTLARELRYEEAALHRDRLSAFLAAAVRTQRVRAL 482

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTD 277
                 +      A  + C   +G+  G+       D
Sbjct: 483 SAVPHLVAARPAGADWEVCVVRYGRLAGSARLRPGAD 519


>gi|312601035|gb|ADQ90290.1| Excinuclease ABC subunit C [Mycoplasma hyopneumoniae 168]
          Length = 516

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/541 (17%), Positives = 194/541 (35%), Gaps = 70/541 (12%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P   GVY+  D    +LYVGKA NL+ R+  Y     ++++   +I +   I++ +   
Sbjct: 13  LPNQVGVYRFYDEKNTLLYVGKAKNLKSRMNQYAKGATNSYKTEVLIRKTKEIKYDILQN 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQGSYF 122
           E EAL+LE  +I + +P +NI L+DD+++PYI +  + K+         R   +    ++
Sbjct: 73  ETEALILEKKIISKFQPIYNIKLKDDQNYPYIKLELEKKLNIELVYKISRSKKSKNIFFY 132

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +  +       L+     +     V        L  +   C               
Sbjct: 133 GPFLNKSSALVLKKILENIVLYKKGQQIVQSEPE--ILNQKFFLCKKILQE--------- 181

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD-----RLAALSHIQNHNDS 237
                          L     + + +A     +E A  +       +   +       ++
Sbjct: 182 -------------QKLISFCEQKLEKAKKNNQFELANEYHKALIALKKTKIEQQNIELNN 228

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           + N    +     +N   I   F+  G       F +      T  ++L  FL  +Y   
Sbjct: 229 LKNIDFLYYSEIGENNLVISFAFYRNGVFLSNKNFIIDIILNYT--EVLINFLNNYYKIN 286

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLS 357
             P+ +++     + +       +    K+ I + K  + + I+     N     +    
Sbjct: 287 IYPDELVVKNFWPKNA-------EFLDPKINIKIGKSLKYKHILNTLAKNHQDFISHNFD 339

Query: 358 TEISHQMILK---DFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
            EI  ++  +   +  K        ++I   D S++        ++      + +N  R 
Sbjct: 340 QEIKKKIKNQKILELVKTSLKIENVEKIMAIDCSNLESNYPTTGIIFYINGIYERNYNRF 399

Query: 415 FNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKG 474
           FN         +        + + F + IKN + L              PD++++DGG  
Sbjct: 400 FNYRGTKKGDTN-------YMRQGFEKYIKNPKFLK-------------PDLILVDGGIQ 439

Query: 475 QLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534
           Q++    +L+K + E  I I  + K  +     EK     G+ + L     +L F   ++
Sbjct: 440 QINLIIEILRKNHFE--IPIFGMVKNKRHKT--EKIIDLNGKKINLAQ--EVLNFFALIQ 493

Query: 535 D 535
           +
Sbjct: 494 E 494


>gi|167949185|ref|ZP_02536259.1| Excinuclease ABC subunit C [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 221

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/219 (37%), Positives = 110/219 (50%), Gaps = 26/219 (11%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMIS-------------QINNIRFT 61
           M+    +VLYVGK                       ++              QI  I  T
Sbjct: 1   MIGTDDKVLYVGK-------------GEESEAAGEQLLHPRSQSAHPAAWFVQIERIEVT 47

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT TE EAL+LE N+IK LKPR+N+LLRDDKS+PYI ++     PAL   R S    G Y
Sbjct: 48  VTHTEAEALILENNLIKSLKPRYNVLLRDDKSYPYIHLSTDQSFPALSFRRGSRKGGGRY 107

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           FGP+ S  +  +T+  LQ+ F +R C +  FR+R+R CL +QIKRCS PC G IS   Y 
Sbjct: 108 FGPYPSAGSTRETLQLLQKLFPVRQCEEGFFRNRSRACLQYQIKRCSAPCVGLISETDYR 167

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAII 220
           E V  A+ FL G    + + +   M  A+    +E A  
Sbjct: 168 EDVRHAELFLDGKTSTVVDALVARMEAASAALAFEQAAP 206


>gi|332670685|ref|YP_004453693.1| DNA polymerase III subunit epsilon [Cellulomonas fimi ATCC 484]
 gi|332339723|gb|AEE46306.1| DNA polymerase III, epsilon subunit [Cellulomonas fimi ATCC 484]
          Length = 620

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 6/233 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           ++ +P+ PGVY        VLYVG +  +L++R++SY  S     R+T M+   + +   
Sbjct: 237 ADGLPDAPGVYLFRGPNDEVLYVGTSTTSLRQRVRSYFTSAEKRRRMTEMVRIAHRVDPV 296

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
           V  T +EA + E  +I    PR+N   R  +  P++ +T     P L   R+       +
Sbjct: 297 VCATPLEARVRELRLIAEHSPRYNRRSRFPERMPWVRLT-SEPYPRLSVVREVREEDGAA 355

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVF---RHRTRPCLLFQIKRCSGPCTGEISS 177
           Y GPF S  A +  +++L  +F +R C   +          C+L ++ RC  PC G    
Sbjct: 356 YIGPFGSTAAAQLALDALHESFPVRQCTRRLPLVAPAGATACVLAELGRCGAPCLGRQGP 415

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
           + Y E V   +  ++G    +    A  +     +E +E A   RDRLAA   
Sbjct: 416 DAYREVVDRVRTAMTGDPAGVVAAHAERIAWLVGQERFEEAATVRDRLAAFLR 468


>gi|315932394|gb|EFV11337.1| GIY-YIG catalytic domain protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 147

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 7/123 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-------SNNHTHRITHMISQ 54
             + +P   GVYQ  +  G++LYVGKA NL+ R+KSY         +  ++ RI  MI +
Sbjct: 9   ELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEE 68

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDS 114
             ++ F  T +E +AL+LE + IK+L P++NILLRDDK++PYI +  + + P     R  
Sbjct: 69  TVHLEFITTNSEADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKL 128

Query: 115 STI 117
              
Sbjct: 129 VKK 131


>gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 572

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 6/234 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P   GVY        VLYVG A +L++R++ Y  +     RI  M+     I   V
Sbjct: 219 ADALPNASGVYLFRGPNEEVLYVGTATDLRRRVRQYFTAGEKRSRIKEMVGLAERIDHVV 278

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  ++   +PR+N   +  +   ++++T     P L   R       +  
Sbjct: 279 CAHPLEAEVRELRLLAAHQPRYNRRSKFPQRAWWVVLT-DEPFPRLSVVRTPRP---TAL 334

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKY 180
           GPFAS  A  + +++LQ    +R C + +     R RPC L++++RC+ PC G  S+E Y
Sbjct: 335 GPFASRRAAAEAVDALQEATKVRRCTERIPARDPRGRPCALYELQRCAAPCAGLQSAEDY 394

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
              V      ++G    +  ++   + + +  + +E A +HRDRLAAL    + 
Sbjct: 395 APEVIAISDVVAGLGTGVLHRLRAELERLSRAQRFEDAAVHRDRLAALVRSLDR 448


>gi|255023886|ref|ZP_05295872.1| excinuclease ABC, chain C (UvrC) [Listeria monocytogenes FSL
           J1-208]
          Length = 144

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 77/135 (57%), Gaps = 2/135 (1%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 ASVDAVEKTINSLQR 140
               +  +T++ +++
Sbjct: 130 PGRFSARQTVDLIEK 144


>gi|169838012|ref|ZP_02871200.1| Excinuclease ABC subunit C [candidate division TM7 single-cell
           isolate TM7a]
          Length = 133

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/117 (42%), Positives = 77/117 (65%), Gaps = 2/117 (1%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIR 59
           +  + +P  PGVY M +  G+++YVGKA NLQ R+KSY  + N+H  +   ++  I +I 
Sbjct: 18  VKYKDIPTNPGVYLMKNERGKIIYVGKAKNLQNRVKSYFTNINSHNQKTLELVKNIRDIE 77

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116
           F +  +EVEAL+LE N+IK+ KP++NILL+D+K++PYI  T K K P +   R +  
Sbjct: 78  FFICKSEVEALILENNLIKKNKPKYNILLKDEKTYPYIKFT-KEKFPKVEIVRSTKN 133


>gi|253577599|ref|ZP_04854910.1| UvrABC system protein C [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843017|gb|EES71054.1| UvrABC system protein C [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 363

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/282 (23%), Positives = 123/282 (43%), Gaps = 2/282 (0%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQINNIRF 60
               +P  PGVY M D AG V+YVGK+ NLQ+R++SY H++ H + ++  +   + ++  
Sbjct: 9   QLRTLPAAPGVYLMKDAAGGVIYVGKSKNLQQRVRSYFHASRHRSKKVERLAHNVKDLEI 68

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-G 119
             T TE EAL+LE  +I+ LKP +N  ++    + Y++I D   I  L            
Sbjct: 69  LRTDTEFEALMLECRLIRELKPMYNKKMKSPHGYVYLVIRDTDGIWDLEVVDVPEAPGIR 128

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
             +GP+++     +      R     +C+         PCL   +  C G C G  + E 
Sbjct: 129 QVYGPYSASRHSVEAAVRSVREALRIACSRPRSAPTGVPCLNHSLGLCLGACLGGEAVEL 188

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
               ++     L G + +L+E++   M   + + D+E+A   RD L A+       +   
Sbjct: 189 NNCVMNRFAALLDGSDSSLREELEGRMRDFSERVDFEAAAKLRDALHAIDLFARQEEIAG 248

Query: 240 NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281
                 +    +  +  +  +F   +N    +  ++    S+
Sbjct: 249 FVEQNGNFVVLERWSERKAKWFILRRNTILYSRKVEISEGSS 290


>gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 560

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 2/277 (0%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY  +D A RVLYVG + +++ R+ SY ++     R+  M++   +IR  V  
Sbjct: 212 DVPHAPGVYMFVDGADRVLYVGSSRDMRSRVTSYFNAAESRGRMAEMVTAAQSIRVIVCP 271

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           TE+EA + E  +I  L+P +N L +      ++ +T+  K P L   R   + Q    GP
Sbjct: 272 TELEARVREVRLIDELQPPYNRLSKGASRETWLKLTN-EKYPRLSIVRTPPSQQDLALGP 330

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFV 184
           F    +     + L+R + L+ C     R   RPC   ++ +C GPC+G   SE Y+  +
Sbjct: 331 FRKNASARAAKDLLERIYPLKRCTAKPERADFRPCPAGEMGKCGGPCSGITRSEDYVRGI 390

Query: 185 HEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN-RMD 243
                 L G           ++ Q  ++E YE A   RD   ++    +  +   +   +
Sbjct: 391 APVVALLEGTPQAFVGHTMTHLKQLAVQERYEEAATARDVAISVLRAGSRGEQNGSVEKN 450

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSES 280
                               G    T      T+ + 
Sbjct: 451 EHLAAAMVTDHGFDVAIIRRGLLGATEHVPWGTNLQD 487


>gi|229820392|ref|YP_002881918.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM
           12333]
 gi|229566305|gb|ACQ80156.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM
           12333]
          Length = 590

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 114/269 (42%), Gaps = 7/269 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVYQ L   GRVLYVG A NL+ R++SY  ++    RI  M+     +   V
Sbjct: 226 ADGLPAAPGVYQFLGPQGRVLYVGTATNLRTRVRSYFTASEKRARIGEMLRIAERVHPIV 285

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRD-SSTIQGSY 121
             T +EA + E  +I    P +N   R  +  P+I +T     P L   R+   +  G+ 
Sbjct: 286 CATPLEAAVRELRLIAEHSPPYNRRSRAPEREPWIRLT-DEAYPRLSVVREVPRSHAGAA 344

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCA---DSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
            GPF +    +  + +L   F LR C+     V R    PC+L ++ RC  PC G I   
Sbjct: 345 IGPFRTRRLAQLALEALHGAFPLRQCSPRLPRVPRADASPCVLAELGRCGAPCVGRIDEP 404

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y   V + +  L+G    +   +   +      E YE A   RDRL AL         +
Sbjct: 405 GYDTVVADVRAVLAGDVEPVVATVRSRIAALAGSERYEDAARERDRLTALLRGSARAARL 464

Query: 239 YNRMDCFSL--YHNKNLACIQTCFFHFGQ 265
               D   +      +    +     +G+
Sbjct: 465 GGLADASHVLAARRTDDGGWELVCARYGR 493


>gi|325921648|ref|ZP_08183485.1| UvrC Helix-hairpin-helix [Xanthomonas gardneri ATCC 19865]
 gi|325547882|gb|EGD18899.1| UvrC Helix-hairpin-helix [Xanthomonas gardneri ATCC 19865]
          Length = 143

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 2/125 (1%)

Query: 485 KLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITT 544
            L +EN + ++ +AKG +R AG E   +  G  L      P L FIQ++RDEAHRFAIT 
Sbjct: 7   DLGIEN-VLLVGVAKGEERRAGHEALVMADGRELRPGAASPALQFIQQVRDEAHRFAITG 65

Query: 545 HRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           HR RR+KA   S L++I GIGP R+  LL+ FG +  +  +    +A ++G++  +A +I
Sbjct: 66  HRGRRQKARMTSKLEDIPGIGPRRRASLLKHFGGLVGLKAAGEAEIARVDGVNAALAARI 125

Query: 604 YNHFH 608
           Y + H
Sbjct: 126 YANLH 130


>gi|168823338|ref|ZP_02835338.1| anaerobic glycerol-3-phosphate dehydrogenase subunit A [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205340448|gb|EDZ27212.1| anaerobic glycerol-3-phosphate dehydrogenase subunit A [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
          Length = 364

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 2/118 (1%)

Query: 489 ENRITIISIAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRK 547
           ++R  ++ +AKG  R AG+E  F   +GE   L    P L+ IQ +RDE+H  AI  HRK
Sbjct: 242 KHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRK 301

Query: 548 RRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           +R K    S L+ I G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A KI+
Sbjct: 302 KRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 359


>gi|54020325|ref|YP_115584.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae 232]
 gi|53987498|gb|AAV27699.1| excinuclease ABC subunit C [Mycoplasma hyopneumoniae 232]
          Length = 516

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 93/539 (17%), Positives = 192/539 (35%), Gaps = 66/539 (12%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P   GVY+  D    +LYVGKA NL+ R+  Y     ++++   +I +   I++ +   
Sbjct: 13  LPNQVGVYRFYDEKNTLLYVGKAKNLKSRMNQYAKGATNSYKTEVLIRKTKEIKYDILQN 72

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQGSYF 122
           E EAL+LE  +I + +P +NI L+DD+++PYI +  + K+         R   +    ++
Sbjct: 73  ETEALILEKKIISKFQPIYNIKLKDDQNYPYIKLELEKKLNIELVYKISRSKKSKNIFFY 132

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +  +       L+     +     V        L  +   C               
Sbjct: 133 GPFLNKSSALVLKKILENIVLYKKGQQIVQSEPE--ILNQKFFLCKKILQE--------- 181

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD-----RLAALSHIQNHNDS 237
                          L     + + +A     +E A  +       +   +       ++
Sbjct: 182 -------------QKLISFCEQKLEKAKKNNQFELANEYHKALIALKKTKIEQQNIELNN 228

Query: 238 IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK 297
           + N    +     +N   I   F+  G       F +      T  ++L  FL  +Y   
Sbjct: 229 LKNIDFLYYSEIGENNLVISFAFYRNGVFLSNKNFIIDIILNYT--EVLINFLNNYYKIN 286

Query: 298 PCPENILL-SEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
             P+ +++ +   +    L+     + G  +K         +   +    N  +   +K+
Sbjct: 287 IYPDELVVKNFWPKNAEFLDPKINIKIGKSLKYKHILNTLAKNHQDFISHNFDQEIQKKI 346

Query: 357 STEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFN 416
             +      +    K        ++I   D S++        ++      + +N  R FN
Sbjct: 347 KNQK-----ILGLVKASLKIENVEKIMAIDCSNLESNYPTTGIIFYINGIYERNYNRFFN 401

Query: 417 LHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
                    +        + + F + IKN + L              PD++++DGG  Q+
Sbjct: 402 YRGTKKGDTN-------YMRQGFEKYIKNPKFLK-------------PDLILVDGGIQQI 441

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRD 535
           +    +L+K + E  I I  + K  +     EK     G+ + ++    +L F   +++
Sbjct: 442 NLIIEILRKNHFE--IPIFGMVKNKRHKT--EKIIDLNGKKINVSQD--VLNFFALIQE 494


>gi|308811182|ref|XP_003082899.1| excinuclease ABC subunit B (ISS) [Ostreococcus tauri]
 gi|116054777|emb|CAL56854.1| excinuclease ABC subunit B (ISS) [Ostreococcus tauri]
          Length = 1294

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/599 (22%), Positives = 222/599 (37%), Gaps = 101/599 (16%)

Query: 5    QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN--NHTHRITHMISQINNIRFTV 62
             MP   GVY+ LD  G+VLY+GKA NL+ R   Y+       + R   +++    +   +
Sbjct: 724  DMPAKTGVYRWLDADGKVLYIGKAKNLRSRTGHYLSPALIQASPRHRKLLASARTLDAVL 783

Query: 63   T-CTEVEALLLEANMIKRLKPRFNILLRDDKSFP-----YILITDKHKIPALYKHR---- 112
            T   E +AL LEA +I+R +P  NILL+D    P      I++T K+    L+  R    
Sbjct: 784  TPGGEADALALEARLIQRERPALNILLKDA---PKPESARIVLTSKNSDGRLFIARFQNE 840

Query: 113  -DSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
             D S ++  +  P  + +A  +T+  L+R   LR  +   FR R          + +   
Sbjct: 841  FDPSKVERVWTLP--TREAAIRTMAFLERALDLRGVS---FRSRFGETAAIAQWKFAVDI 895

Query: 172  TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231
               +   KY + + + +           E  A    + + +E+ E     R  LAAL   
Sbjct: 896  ASMVLDAKYDDAIAKLELHG--------ELAAALEIRVSAQEEAERGQGSRGSLAALLQA 947

Query: 232  QNHNDSIYNRMDCFSLYHNKNLACIQ-TCFFHFGQNRGTCTFFLKTDS--------ESTN 282
             +   + +  MD  +   +    C         G         +   +        E+T 
Sbjct: 948  DS--SAKHWNMDIIAAASSGGGTCAVKIVKVRDGVIVDVLGSSVDVPNATADDDIAEATL 1005

Query: 283  AQILSYFLRQFYTDKPC--PENILLSEEA-EETSLLEISFFKQYGYKVKITVPKQGEKRK 339
            A+       Q Y  +    P+ + +     E   L         G   +  V   G  ++
Sbjct: 1006 AEAAQLVAEQMYASETSDRPDVVYIPHVVAEPVQLRAALKSLGIGGSSRSKVLHHGSAKE 1065

Query: 340  ------IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGC 393
                  + + AL NA  S     S  I+            AL   PK IE  D SH+ G 
Sbjct: 1066 GSLLQALADVALENADESARATASKSIAALR----LKDAIALSASPKSIEGVDVSHLAGQ 1121

Query: 394  SAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHP 453
            +AV   V          +++++ L    V   DD   +   +  R S             
Sbjct: 1122 NAVTSFVRFEGGSPAPLKHKRYEL-SEAVTPSDDYGGIAESITARLS------------- 1167

Query: 454  KKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV--------------------ENRIT 493
                 S  + PDV+++DGG GQL+AA   + +  V                       + 
Sbjct: 1168 -----SKGALPDVLMIDGGAGQLTAAANAILEAGVVISNMVGEDDRPLDLANSKPRRTVA 1222

Query: 494  IISIAKGPKRSAGMEKFFV----KKGEALVLNMRDP---ILYFIQRLRDEAHRFAITTH 545
            + ++AKG  RS+G E  ++      G  + + + D     L  ++ +RD AH  A+  H
Sbjct: 1223 LCALAKG--RSSGEEALWIPALSPAGRCVGVRVDDAHVDALRLLRAVRDSAHAVALGAH 1279


>gi|289640817|ref|ZP_06472988.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289509393|gb|EFD30321.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 629

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 3/233 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY   D   R LYVG + +++ R++SY  +     R+T M++    +    
Sbjct: 287 ADDLPTGPGVYIFRDSTDRPLYVGTSRSVRARVRSYFTAGEPRQRMTAMVASAERVDAIA 346

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I   KP +N   R+ +   Y+ IT     P L + R ++   G+Y 
Sbjct: 347 CAHALEAQVREVRLIAEHKPPYNRRSRNPERAVYLKIT-DEPYPRLSRVR-AARDDGTYL 404

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF S+ A +    ++     LR CA     R  T  C L ++ RC  PC G  S ++Y 
Sbjct: 405 GPFPSMAAADLAAAAIHEAIPLRQCATRLSPRRPTAACALVELGRCGAPCDGRESPQEYA 464

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
             V  A   ++     + +     +     ++ YE A + RDRL A  H    
Sbjct: 465 RHVAAAVTAITADPQVVVDAARARIAALAAEQRYEDAAVVRDRLLAFLHASQR 517


>gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233]
 gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM
           44233]
          Length = 613

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 3/236 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++++P  PGVY        VLYVG + NL +R++SY  +  +  RI  M++    +    
Sbjct: 243 ADRLPAAPGVYLFRGPREEVLYVGTSRNLAQRVRSYFTAAENRPRINQMVALAERVDHVE 302

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I   +P +N   R      ++ +T     P L   R       +  
Sbjct: 303 CAHALEAHIREQRLIAVHQPPYNRRSRRPGGVCWVTLT-DEAFPRLSIVRQPPRGSPACL 361

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKY 180
           GPF +  A +  + +LQ    +R C   + RH     PC+L ++ RC  PC G      Y
Sbjct: 362 GPFPNRVAAQVAVEALQDVVPIRQCTTRIRRHSPDGTPCVLAELGRCGSPCDGRQDELSY 421

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
              V    + + G +  L + +   +   +    ++ A + RDRL+AL+   +   
Sbjct: 422 AREVARIVELVDGRSDQLLQLLRTRLLGLSADGRFDQAAVARDRLSALAAALDRRQ 477


>gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 584

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 6/232 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +PE PGVY        VLYVG + N++KR++SY  +     RIT M+   + +   V
Sbjct: 227 ADGLPEAPGVYLFKGPGDEVLYVGTSTNIRKRVRSYFTAAEKRRRITEMVRIAHEVTPVV 286

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +EA + E  +I   +PR+N   +  +   ++ +T     P L   RD       + 
Sbjct: 287 CATPLEAAVRELRLITEHEPRYNRRSKHPERHTWVRLT-DEPYPRLSVVRDV-RPGAPHI 344

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS---VFRHRTRPCLLFQIKRCSGPCTGEI-SSE 178
           GPF S    +  +++L     LR C      V R    PC L  + RCS PC   +   +
Sbjct: 345 GPFGSRRVAQDAVDALHDALPLRQCTLRLAAVSRTPGSPCALAGMGRCSAPCVAVVAPDD 404

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
            Y      A + L+G   ++ + +A  + +   ++ +E A +   RL A   
Sbjct: 405 AYAAVAKTAAEVLTGDPSSVVQALAARIGRLAAEQRFEEAGVVTGRLRAYVQ 456


>gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c]
 gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c]
          Length = 615

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 102/235 (43%), Gaps = 2/235 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY   D  GRVLYVGK+ +++ R+++Y  ++    R+  M++    +    
Sbjct: 246 ADDLPTGPGVYIFRDATGRVLYVGKSASVRARVRTYFTASETRSRMAEMVAAAERVDAIA 305

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I   KP +N   R  +   ++ +T     P L K R      G+Y 
Sbjct: 306 CAHALEAEVRELRLIAEHKPPYNRRSRFPERVVFLRLT-DEPFPRLSKVRQVRADAGTYL 364

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181
           GPF  V   E   + L     LR C   +    T P C L  + +C  PC G  S E Y 
Sbjct: 365 GPFGGVGGAELAGDGLLDAVALRRCGGRLSPRVTSPACALADLGKCGAPCDGRQSVESYG 424

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           + V  A++ ++G    +       +     +  +E A + RDR+ A         
Sbjct: 425 DVVAAAREAMTGDPALVVAAARARIAGLAEQTRFEEAALVRDRMVAFVRAAARQQ 479


>gi|255028308|ref|ZP_05300259.1| excinuclease ABC subunit C [Listeria monocytogenes LO28]
          Length = 135

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
           E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +       YFGP+
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKRDGAHYFGPY 129

Query: 126 A 126
            
Sbjct: 130 P 130


>gi|296129915|ref|YP_003637165.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM
           20109]
 gi|296021730|gb|ADG74966.1| DNA polymerase III, epsilon subunit [Cellulomonas flavigena DSM
           20109]
          Length = 631

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 6/232 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           ++ +P+ PGVY        VLYVG +  +L++R++SY  S     R+  M+     +   
Sbjct: 258 ADGLPDAPGVYLFRGPRDEVLYVGVSTTSLRRRVRSYFTSAEKRGRMQEMVRLAVRVDPV 317

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           V  T +EA + E  +I    PR+N   R  +  P++ +T     P L   R+    +   
Sbjct: 318 VCATPLEARVRELRLIAEHAPRYNRRSRAPERMPWVRLT-DEPFPRLSVVREVREGRAH- 375

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADS---VFRHRTRPCLLFQIKRCSGPCTGEISSE 178
            GPFAS    ++ +++L  TF +R C      V       C+L ++ RC  PCTG     
Sbjct: 376 IGPFASRALAQQAVDALHATFPVRQCTGRLPVVPSADAHACVLAEVGRCGAPCTGGQDVA 435

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
            Y       +  ++G   ++ +  A  +     +E +E A   RDRL +   
Sbjct: 436 AYAPVAAAVRDAMTGDPRDVAQAHAVRIRTLAAQERFEEAATVRDRLTSYVR 487


>gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a]
 gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
          Length = 580

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 3/233 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY   D  GR LYVG + +++ R+++Y  ++    R+  M++    +    
Sbjct: 215 ADGLPTGPGVYIFRDADGRALYVGTSRSVRSRVRTYFTASEPRTRMAEMVALAERVDAIG 274

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I   KP +N   R  +   Y+ +T     P L + R ++  + +Y 
Sbjct: 275 CAHALEAEVRELRLIAEHKPPYNRRSRFPERTVYLKLT-DEPFPRLSRVR-AARDEATYL 332

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181
           GPFAS    +   ++L     LR C   +     RP C L  + RC  PC G      Y 
Sbjct: 333 GPFASTRGADDAADALLAAVPLRQCTGRLSPRARRPACALADLGRCGAPCDGREDVAAYA 392

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
             V  A+  ++G    +     R +++   +  YE A +HRDR+ +       
Sbjct: 393 RHVAAARAAITGDPGPVIAASTRRIDRLAGERRYEEAAVHRDRMVSFVRAAAR 445


>gi|329121129|ref|ZP_08249760.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965]
 gi|327471291|gb|EGF16745.1| excinuclease ABC subunit C [Dialister micraerophilus DSM 19965]
          Length = 188

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 47/104 (45%), Positives = 72/104 (69%), Gaps = 1/104 (0%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
             E +P  PGVY+  D  G+V+YVGKA NL+ R+KSY+ ++ N + ++  MI    ++  
Sbjct: 11  KLENLPSSPGVYRWKDKNGKVIYVGKAVNLKNRVKSYVRNDKNKSPKVISMIKHAEDLDI 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK 104
           T+T  E+EAL+LE N+IK L+P++NI LRDDK++PY+ +T   K
Sbjct: 71  TITKNELEALILECNLIKELQPKYNISLRDDKTYPYLKVTVNEK 114


>gi|213616217|ref|ZP_03372043.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 356

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 104/356 (29%), Positives = 176/356 (49%), Gaps = 11/356 (3%)

Query: 96  YILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR 155
           Y  ++     P L  HR +   +G YFGPF +  AV +T+  LQ+ F +R C +SV+R+R
Sbjct: 5   YFFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR 63

Query: 156 TRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214
           +RPCL +QI RC GPC    +S E+Y + V   + FLSG +  +  ++   M +A+    
Sbjct: 64  SRPCLQYQIGRCLGPCVAGLVSEEEYTQQVEYVRLFLSGKDDQVLTQLIARMEKASQDLA 123

Query: 215 YESAIIHRDRLAALSHIQNHNDSIY--NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTF 272
           +E A   RD++ A+  +          + +D   +  +  +AC+   F   G+  G+ ++
Sbjct: 124 FEEAARIRDQIQAVRRVTEKQFVSNAGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSY 183

Query: 273 FLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSEEAEETSLLEISFFKQYGYKVK 328
           F K    +   +++  F+ QFY      +  P  ILL     + +LL  S  +  G ++ 
Sbjct: 184 FPKVPGGTELGEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRRIH 243

Query: 329 ITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNS 388
           +    +G++ + ++ A  NA  +   KLS + +    L        LP I  R+E +D S
Sbjct: 244 VQTKPRGDRARYLKLARTNAATALVTKLSQQSTITQRLTALATVLKLPAIK-RMECFDIS 302

Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIK 444
           H MG   V   VV   NG ++ +YR++N+    +   DD A M  VL RR+ + I+
Sbjct: 303 HTMGEQTVASCVVFDANGPLRAEYRRYNI--AGITPGDDYAAMNQVLRRRYGKAIE 356


>gi|297184003|gb|ADI20123.1| nuclease subunit of the excinuclease complex [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 139

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/116 (49%), Positives = 79/116 (68%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+ML+  G VLYVGKA NL++R+ +Y     H+ RI  MIS  +++ F  
Sbjct: 23  LKTLDGSPGVYRMLNQDGEVLYVGKARNLKRRVSNYAKLTGHSARIGRMISNTSSMMFLT 82

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ 118
           T TE EALLLE N+IK+LKPR+N+LLRDDKSFP I+I+   + P + KHR   + +
Sbjct: 83  TQTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNIMISRALEFPKIAKHRGRRSKR 138


>gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM
           43017]
 gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Saccharomonospora viridis DSM 43017]
          Length = 570

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 6/234 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PGVY     +  VLYVG A NL++R++ Y  ++++  RI  M++    +      
Sbjct: 213 HLPERPGVYLFRGPSDEVLYVGTARNLRRRVRQYFTASDNRGRIREMVALAERVDAVECS 272

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
             +EA + E  ++   +P +N   R+     ++++T     P L   R          GP
Sbjct: 273 HALEAAVRELRLLAAYRPPYNRRSRNPSKVWWVVLT-DEPFPRLSVVRQP-RDGA--LGP 328

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKYME 182
           F S ++     ++L     LR+C   +         C+L ++  C  PC G  ++E Y  
Sbjct: 329 FTSRNSARAVADTLADLARLRTCTRRIPATGAAGPSCVLAELGSCGAPCIGAQTAEDYRL 388

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            V      + G +  L  +    ++  +  + +E A   RD L A+    +   
Sbjct: 389 SVRLVSDLIDGVDTALLRRGHEQLDALSAIQHFERAARRRDELVAVLRAVDKRH 442


>gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
 gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
          Length = 565

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 3/235 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY   D A R LYVG + +++ R+++Y  ++    R+  M++    +    
Sbjct: 223 ADDLPTGPGVYVFRDGADRPLYVGTSRSVRSRVRTYFTASEPRSRMAQMVALAERVDAIG 282

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I   KP FN   R  +   Y+ +T     P L + R       +Y 
Sbjct: 283 CAHALEAEVRELRLIAEHKPPFNRRSRHPERAVYLRLT-DELFPRLSRVRSVG-DGVTYL 340

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF S  A ++   +L     LR C+  +   R T  C L ++ RC  PC G     +Y 
Sbjct: 341 GPFGSTQAAQEAEIALLAAVPLRQCSARLSPSRPTAACALAELGRCGAPCDGRQGVAEYA 400

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           E V  A++ +SG    ++E +  ++ +   ++ YE A   RDRLA          
Sbjct: 401 EVVGAAREAMSGDPGAVQESLEAHIARLAAEQRYEQAAEVRDRLAGYLRTAARRQ 455


>gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM
           43160]
 gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM
           43160]
          Length = 609

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 2/235 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY         LYVG + +L+ R++SY  +     R+T M++    +    
Sbjct: 233 ADAVPHGPGVYLFRGPRDEPLYVGTSTDLRSRVRSYFTAGEQRSRMTEMVALSQRVDAIP 292

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
              ++EA + E  +I   KPR+N   R  +   ++ +T +   P L   R      G + 
Sbjct: 293 CAHDLEAAVRELRLIAEHKPRYNRRSRFPERALWVRLT-EEPFPRLSVVRRVRPGAGVFL 351

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF    A +  + ++  +  LR C      R     C L  + RC  PCTG  S E+Y 
Sbjct: 352 GPFPDRRAADAAVAAVHESLPLRQCTGRLSVRVLGTACALAGMGRCGAPCTGAQSVEEYG 411

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                 +  ++   H L   +   + +   +E YE A + RDR A L        
Sbjct: 412 GIAAVLRTAVAADPHALLAPLLARVERLAAEERYEDAAVLRDRAATLVRAVRRRQ 466


>gi|323948206|gb|EGB44194.1| GIY-YIG catalytic domain-containing protein [Escherichia coli H120]
          Length = 109

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 48/94 (51%), Positives = 65/94 (69%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI  I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY 96
           T TE EALLLE N IK  +PR+N+LLRDDKS+P+
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSYPF 104


>gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440]
 gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440]
          Length = 607

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 95/236 (40%), Gaps = 3/236 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY       R LYVG + ++  R++SY  +     RI+ M++    +    
Sbjct: 249 AEGLPHSPGVYLFRGADNRPLYVGTSIDIATRVRSYFTAAEKRARISEMLAAAERVEAVE 308

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I    P +N   +  +   ++ +T     P L   R+ +    +Y 
Sbjct: 309 CAHSLEAEVRELRLIGTHAPPYNRRSKFPERVVWLKLT-DEAYPRLSVVRNLAPGDEAYL 367

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181
           GPF S  A E           LR C   +   +  P C + ++ RC  PC   I+  +Y 
Sbjct: 368 GPFTSRRAAELAAAGFHDAMPLRQCTHRLSVRKVTPACAVAELGRCPAPCEHRITPTEYA 427

Query: 182 EFVHEAKKFLSGGNHN-LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +      +   G +   + + +   +   +  + YE A + R RL A+        
Sbjct: 428 DRATTPFRRACGDDPQGVVDALLGRIETLSAGQRYEEAAVVRSRLTAVLRAITRMQ 483


>gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205]
 gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205]
          Length = 585

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 3/236 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY       R LYVG + ++  R++SY  +     RI+ M++    +    
Sbjct: 227 AEGLPRTPGVYLFRGADDRPLYVGTSVDIATRVRSYFTAAEKRARISEMLAAAVRVEAVE 286

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I    P +N   +  +   ++ +T     P L   R  +    +Y 
Sbjct: 287 CAHSLEAEVRELRLIGAHAPPYNRRSKFPERVVWLKLT-DEAYPRLSVVRKLTPGDEAYL 345

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKY- 180
           GPF S  A E           LR C   +      P C L ++ RC  PC   I+ ++Y 
Sbjct: 346 GPFTSRRAAELAAAGFHDAMPLRQCTHRLSVRTVTPACALAELGRCPAPCEHRITPDEYA 405

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
              V   +    G    + + +   +   +  + YE A + R RL A+        
Sbjct: 406 NRAVTPFRTACRGDPQGVVDALLGRIETLSTGQRYEEAAVVRSRLTAVLRATTRMQ 461


>gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
 gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
          Length = 567

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 6/232 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY        VLYVG A +L++R+++Y   + +  RI  M++    +   V  
Sbjct: 218 DLPSAPGVYLFKGPKDEVLYVGTAKDLRRRVRTYFTGSENRSRIREMVALAERVDHVVCA 277

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
             +EA + E  +I   +P +N   ++     +I +T     P L   R          GP
Sbjct: 278 HALEAEVRELRLIAAHRPAYNRRSKNRHQGWWIGLT-DEAFPRLSVVRLPRPG---VLGP 333

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKYME 182
           F +      T ++L     LR+C   +        PC+L ++ RC  PC G  S  +Y  
Sbjct: 334 FRNQADARTTADTLAGASGLRTCTQRISPRSANGTPCVLAELGRCGAPCAGRQSVAEYGP 393

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
            V      ++G +       A ++ +      YE A  HRD LA L      
Sbjct: 394 AVESVSGLIAGLDGGPLHTAAAHVERLAEGRHYEQAARHRDELAGLIRALGR 445


>gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3]
 gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3]
          Length = 584

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 3/233 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY   D   R LYVG + +++ R+++Y  ++    R+  M++    +    
Sbjct: 224 ADGLPTGPGVYIFRDADERALYVGTSRSVRSRVRTYFTASEPRTRMAAMVALAERVDAIG 283

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I   KP +N   R  +   Y+ +T     P L + R ++    +Y 
Sbjct: 284 CAHALEAEVRELRLIAEYKPPYNRRSRFPERSVYLKLT-DEPFPRLSRVR-AARDDATYL 341

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF SV A +    +L     LR C+     R R   C L  + RC  PC G      Y 
Sbjct: 342 GPFGSVRAADAAAEALLAAVPLRQCSGRLSPRVRRSACTLADLGRCGAPCDGREDVASYG 401

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
             V  A+  ++G    +     R +++   +  YE A + RDR+ A       
Sbjct: 402 RHVAAARAAITGDPGRVIAASTRRIDRLAAERRYEEAAVQRDRMIAFVRAAAR 454


>gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 595

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 24/251 (9%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +PE PGVY   D  G  LYVGK+ NL++R+++Y  +     RI  M   +  +   V
Sbjct: 223 AEDLPEEPGVYVFTDARGESLYVGKSKNLRRRVRTYFTAAESRQRIREMAGLVAGVTPIV 282

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             +E+EA + E  +I   KP +N   R+ +   ++ +T     P L   R  S    ++ 
Sbjct: 283 CSSELEASVRELRIIAERKPPYNRRSRNPERASWVRLT-ADAFPRLSVVRAVSGDGAAHI 341

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-----------------------TRPC 159
           GP+AS    E+   +L   F LR CA +    +                       T PC
Sbjct: 342 GPYASPREAERAREALLHVFPLRQCAHTFRPPKAVAGGSGGGTRVAPQVVTSGARWTGPC 401

Query: 160 LLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAI 219
           ++ Q+ RC  PC G  S  +Y      A+  ++G    + +     + +      YE A 
Sbjct: 402 VVAQLGRCGAPCDGSESEAEYAVHAEAARVAMTGDPAAVVDAYTARIGELAADLRYEEAA 461

Query: 220 IHRDRLAALSH 230
             RDRL A   
Sbjct: 462 HLRDRLTAFLR 472


>gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
 gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
          Length = 584

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 124/363 (34%), Gaps = 8/363 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY       R LYVG + ++  R++SY  +     RI+ M++    +    
Sbjct: 226 ADGLPRSPGVYIFRAADDRPLYVGTSRDIATRVRSYFTAAEKRARISEMLAAAERVEALE 285

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I    P +N   +  +   ++ +TD    P L   R+ S    +Y 
Sbjct: 286 CAHSLEAEVRELRLIGAHAPPYNRRSKYPERVVWLKLTDG-PYPRLSVVREISPDDRAYL 344

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF+S  A E           LR C      R  T  C L ++ RC  PC   I+ ++Y 
Sbjct: 345 GPFSSRRAAELAAAGFHDAVPLRQCTHRLSLRTVTPACALAELGRCLAPCEHRITPQEYD 404

Query: 182 EFVHEAKKFL-SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND--SI 238
                      +G    + + +   +      + YE A + R RLAA+          + 
Sbjct: 405 AVAVTPFAEATTGDVKPVVDALLARIEALAAGQRYEEAAVLRSRLAAVLRATVRMQRLAA 464

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +   +          +      G+  G            T A + +          P
Sbjct: 465 LTGIAEVAAARPAEHGGWELALVRHGRLAGAGVSPPGVHPRPTLATMRATAETVSAGHGP 524

Query: 299 CPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
            P       E  E  L  +   +    ++                 L  A  + + +L +
Sbjct: 525 VPAAT---PEESERILSWLERPETRLVEMSAGWASPVSGAGRFRDLLTKAENAASHQLWS 581

Query: 359 EIS 361
           E S
Sbjct: 582 ERS 584


>gi|218507012|ref|ZP_03504890.1| excinuclease ABC subunit C [Rhizobium etli Brasil 5]
          Length = 204

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 96/201 (47%), Positives = 128/201 (63%), Gaps = 8/201 (3%)

Query: 352 HTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQ 411
             +KL+   S   +L+ F + F L + P+RIEIYDNSHIMG +AVG MVV G  GFVKNQ
Sbjct: 1   MGRKLAETASQSRLLEGFKETFGLAYAPQRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQ 60

Query: 412 YRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYS-----FPSWPDV 466
           YRKFN+   D+   DD  MM+ V+ RRFS+LIK E   +   +          FP+WPDV
Sbjct: 61  YRKFNIKSTDITPGDDFGMMKEVMTRRFSRLIKEEGIPDRTAQATATDAADMPFPAWPDV 120

Query: 467 VILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPI 526
           +++DGG+GQ++A + +L +L + + +  I IAKG  R AG E+FF    E+  L  RDP+
Sbjct: 121 ILIDGGQGQMTAVRAILAELGITDSVMAIGIAKGVDRDAGRERFFPPGRESFTLPPRDPV 180

Query: 527 LYFIQRLRDEAH---RFAITT 544
           LYFIQR+RDEAH   R A T 
Sbjct: 181 LYFIQRMRDEAHSLSRLARTG 201


>gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 572

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 6/232 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY        VLYVG A +L++R+++Y   +    RI  M++    +      
Sbjct: 222 DLPSRPGVYLFKGPRDEVLYVGTARDLRRRVRTYFTGSESRGRIREMVALAERVDAIECA 281

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
             +EA + E  +I   +P +N   ++     +I +T     P L   R          GP
Sbjct: 282 HSLEAEIRELRLIAAHRPAYNRRSKNPHHGWWISLT-DEAFPRLSVVRLPR---AGTLGP 337

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKYME 182
           F S         +L     LR+C   +        PC+L ++ RC  PC G  +  +Y  
Sbjct: 338 FRSQADARTAAETLADASGLRTCTQRISATSASGTPCVLAELGRCGAPCAGRQTVAEYSP 397

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
            V  A+  ++G +       A  + + + +  YE A  HRD LA L      
Sbjct: 398 AVDAARGLIAGHDGRPLHLAAARLEEMSARRHYEQAARHRDELAGLVRAVGR 449


>gi|226324329|ref|ZP_03799847.1| hypothetical protein COPCOM_02110 [Coprococcus comes ATCC 27758]
 gi|225206777|gb|EEG89131.1| hypothetical protein COPCOM_02110 [Coprococcus comes ATCC 27758]
          Length = 152

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 6/147 (4%)

Query: 468 ILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPIL 527
           ++DGGKGQ++ A  VL +L++   I +  + K              +   + ++      
Sbjct: 1   MMDGGKGQVNIALEVLDELHIS--IPVCGMVKDDHHRTRG---LYYQNIEIPIDHNSEGF 55

Query: 528 YFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             I R++DEAHRFAI  HRK R +   +S LD+I GIGP R++ L+++F ++  I  +  
Sbjct: 56  RLITRVQDEAHRFAIEFHRKLRSQGQVHSILDDIPGIGPARRKALMRTFASLDEIKNAEV 115

Query: 587 ETLASIEGISKKIACKIYNHFHKNTSH 613
           E L  I  + +K A  +YN F  +   
Sbjct: 116 EDLKKIPSMDEKSAKNVYNFFRGSEKE 142


>gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4]
 gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4]
          Length = 588

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 6/236 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +  +P  PGVY     +  VLYVG A +L++R+++Y   +    R+  M++    I    
Sbjct: 218 ASHLPHAPGVYLFRGPSDEVLYVGTATDLRRRVRNYFTGSETRGRMKEMVALTTRIDHVE 277

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  ++    P +N   +  K   +I +T     P L   R  +       
Sbjct: 278 CAHALEAGVRELRLLAAHTPPYNRRSKYPKRGWWITLT-AEAFPRLSVVRTPAADS---L 333

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKY 180
           GPF S        + L     LR+C   + + R     C   ++ RC     G  + + Y
Sbjct: 334 GPFRSRSTAVDVADVLAEYCILRTCTSRIPKGREHGAQCPPRELGRCPASVHGRNTEDAY 393

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                  + FL G +     ++   + +    E +E+A   RDR A +        
Sbjct: 394 RPGPELFRLFLRGADDAPLHRMRARVEELAAGELFENAARLRDRTAEVVLALRRMQ 449


>gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1]
          Length = 597

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 139/381 (36%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ +PE PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 225 AKDLPEGPGVYWFCLDKPAPAQPEVLYVGKSVNIRRRVSQYFTTSETRRRMDEMVRIATG 284

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T +EA + E  +I   +PR+N   R      ++ +T     P     R +   
Sbjct: 285 VKARECSTRLEAGVRELRLIDAHQPRYNRRSRRQGLVWWVTLT-SEAHPRPSVVRRADRG 343

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    +   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 344 SQPLWGPFTSRRAATRAAIVVAEAFGLRQCSGALLRHPDG-CPLAEMGRCSAPC--LDPD 400

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V   +  ++G   +L + +A+ + Q +  E +E A    +    +         
Sbjct: 401 VDYSTIVDRVRLAMTGDVRDLTDLLAKRIAQLSTAERFEEAAEFTNDAKEVLRATRRRSR 460

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L TD       + +         
Sbjct: 461 LVSLASCPQIVAARRDGAFWEIHVIRHGRLAGAGRCRLGTDPMPVIGAVCATA-----ES 515

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P + L +   EE  L+   F +     V I           +    + A  +     
Sbjct: 516 VCPPPSGLPACTIEEAELVASWFEEPGVRLVDIIGEWSWPAHCWMGTYDLAARVAALHHP 575

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 576 GHNESDKTDGQDRQTRSQLAP 596


>gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2]
 gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3]
 gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08]
          Length = 598

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 139/381 (36%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ +PE PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 226 AKDLPEGPGVYWFCLDKPAPAQPEVLYVGKSVNIRRRVSQYFTTSETRRRMDEMVRIATG 285

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T +EA + E  +I   +PR+N   R      ++ +T     P     R +   
Sbjct: 286 VKARECSTRLEAGVRELRLIDAHQPRYNRRSRRQGLVWWVTLT-SEAHPRPSVVRRADRG 344

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    +   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 345 SQPLWGPFTSRRAATRAAIVVAEAFGLRQCSGALLRHPDG-CPLAEMGRCSAPC--LDPD 401

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V   +  ++G   +L + +A+ + Q +  E +E A    +    +         
Sbjct: 402 VDYSTIVDRVRLAMTGDVRDLTDLLAKRIAQLSTAERFEEAAEFTNDAKEVLRATRRRSR 461

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L TD       + +         
Sbjct: 462 LVSLASCPQIVAARRDGAFWEIHVIRHGRLAGAGRCRLGTDPMPVIGAVCATA-----ES 516

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P + L +   EE  L+   F +     V I           +    + A  +     
Sbjct: 517 VCPPPSGLPACTIEEAELVASWFEEPGVRLVDIIGEWSWPAHCWMGTYDLAARVAALHHP 576

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 577 GHNESDKTDGQDRQTRSQLAP 597


>gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM
           20162]
 gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM
           20162]
          Length = 610

 Score =  169 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 100/270 (37%), Gaps = 9/270 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +PE PGVY        VLYVG + NL++R++SY  S     RI  M+     +    
Sbjct: 217 ADPLPERPGVYLFRGPGDEVLYVGTSRNLRRRVRSYFTSGETRGRIKEMVGLAERVDHVE 276

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA   E  +I    P +N   +  K   +I +T     P L   R +        
Sbjct: 277 CAHALEAAARELRLIAAHTPPYNRRSKYPKRGWWICLTV-EPFPRLAVKRSAPA-GSVCL 334

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLL-----FQIKRCSGPCTGEISS 177
           GP  S        + +  T  LR+C   +       C L       +  C G  +    +
Sbjct: 335 GPIRSRTEAADLADLIAETCGLRTCTTRLRPGGAHACALGPDGTRPVGGCHGSVSAPEPA 394

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y      A   L+G +  + + +   ++    +E +ESA   RDR A L  I   + S
Sbjct: 395 SLYRPRADRAAAMLTGRSSAVFDALQARLDSLVEREFFESAARLRDRTAQLVDITLRSHS 454

Query: 238 --IYNRMDCFSLYHNKNLACIQTCFFHFGQ 265
              +  +   S+ H       +      G+
Sbjct: 455 LAAFAEVPELSIAHPDGAGGWELSIVRHGR 484


>gi|164688403|ref|ZP_02212431.1| hypothetical protein CLOBAR_02048 [Clostridium bartlettii DSM
           16795]
 gi|164602816|gb|EDQ96281.1| hypothetical protein CLOBAR_02048 [Clostridium bartlettii DSM
           16795]
          Length = 351

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 134/315 (42%), Gaps = 12/315 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRFTVT 63
            +PE PG+Y M D   R+LYVGK+  L+KR+KSY  +S N + +I  MI  I++I    T
Sbjct: 32  NLPEEPGIYFMKDKEDRLLYVGKSKCLKKRVKSYFLNSTNRSRKIERMIKNISHIDIIKT 91

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            TE +AL LE   I RLKP +N LL+  + + YI +    K   + K  +     G YFG
Sbjct: 92  DTEFDALFLECQNIHRLKPMYNTLLKSYEKYKYICL--DEKDHNIIKISNEIEEDGIYFG 149

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           P++    ++     + + + L  C       R   C+ + + +C GPC  +I      + 
Sbjct: 150 PYSFKRKLDIIKEIIIKVYRLPIC------KRQNKCIRYDLDKCIGPCRKQIDDNIKHDI 203

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMD 243
           V   K  L+G ++ + E + + MN       +E A   +  +   S I      + N   
Sbjct: 204 VKNIKDNLNGKSNFVIESLNKEMNAKAKDLKFEEAAKIKGEIDLFSSIVRKQKYLQNLNR 263

Query: 244 CFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENI 303
               + N      +  +    + +       +     +  + L   ++         ++ 
Sbjct: 264 DIVFWINMKNYKYKVYYIRCAKIKYEKVIDARYP---SQIENLKTSIQDLIVQNKEEKDA 320

Query: 304 LLSEEAEETSLLEIS 318
           L  +E +  +++   
Sbjct: 321 LRKDEIDYINIINEY 335


>gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1]
 gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 588

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 6/234 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY     +  VLYVG A +L++R+++Y   +    R+  M++    I      
Sbjct: 220 HLPHAPGVYLFRGPSDEVLYVGTATDLRRRVRNYFTGSETRGRMKEMVALTTRIDHVECA 279

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
             +EA + E  ++    P +N   +  K   +I +T     P L   R  +       GP
Sbjct: 280 HALEAGVRELRLLAAHTPPYNRRSKYPKRGWWITLTV-EAFPRLSVVRTPTADS---LGP 335

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKYME 182
           F S        + L     LR+C   + + R     C   ++  C        + + Y  
Sbjct: 336 FRSRSTAVDLADVLAEYCILRTCTSRIPKGREHGPQCPPRELAGCPASVHDRATEDAYRP 395

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                ++FL G +     ++   + +    E +E+A   RDR A +        
Sbjct: 396 GPELFRQFLRGLDDAPLHRMRAQVEELAAGELFENAARLRDRTAEVVLALRRMQ 449


>gi|213618593|ref|ZP_03372419.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 102

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 64/92 (69%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11  LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSF 94
           T TE EALLLE N IK  +PR+N+LLRDDKS+
Sbjct: 71  THTETEALLLEHNYIKLYQPRYNVLLRDDKSY 102


>gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec]
 gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec]
          Length = 603

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 3/235 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY   D  GR LYVG + +++ R+++Y  ++    R+  M++    +    
Sbjct: 223 ADDLPTGPGVYVFRDGTGRPLYVGTSRSVRSRVRTYFTASEPRTRMAEMVAIAERVDAIE 282

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I   KP +N   R  +   Y+ +T     P L + R       +  
Sbjct: 283 CAHALEAEVRELRLIAEYKPPYNRRSRFPERAVYLRLT-DEPFPRLSRVRSVG-DGVTSL 340

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF S  A E    +L     LR C+     R  T  C L ++ RC  PC G     +Y 
Sbjct: 341 GPFGSAAAAESAATALLEAIPLRQCSTRLSPRRPTAACALAELGRCGAPCDGREGVAEYG 400

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           + V  A+  ++     + + + R + + +  + YE A   RDRLAA         
Sbjct: 401 QHVATARGAMTADPRPVVDVLERRIARLSADQRYEEAAGVRDRLAAYVRAVARMQ 455


>gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827]
 gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827]
          Length = 578

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 7/265 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY     +  VLYVG A +L++R++ Y  ++   HR+  M++    + +    
Sbjct: 227 DLPSAPGVYLFRGPSEEVLYVGTASDLRRRVRQYFTASETRHRLREMVALAVRVDWVECA 286

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
             +EA + E  +I   +P +N   ++  S+ ++ +T     P L   R +        GP
Sbjct: 287 HPLEAQVRELRLIAAHRPAYNRRSKNTASW-WLALT-DEAFPRLSVVRTAREGA---LGP 341

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKYME 182
           F +  A +    +L     LR+CA  +        PC L ++ RC  PC G    + Y +
Sbjct: 342 FPTRRAADAAAEALLEAVPLRACAQRIPARGASGTPCALLEMGRCKAPCAGLQEVDDYAD 401

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V  A+  ++G +       A  + +  L+E +E A + RDRLA L    +    +    
Sbjct: 402 AVARARALIAGESTEALGGAAARLGELALEERFEEAALRRDRLAGLVRALDRGQRLAALA 461

Query: 243 DCFSLYHNKNLACIQTCFFHFGQNR 267
               L   +        F      R
Sbjct: 462 AVEELVAARPDGAGGWWFAVVRHGR 486


>gi|255027104|ref|ZP_05299090.1| hypothetical protein LmonocytFSL_13633 [Listeria monocytogenes FSL
           J2-003]
          Length = 305

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 146/309 (47%), Gaps = 19/309 (6%)

Query: 57  NIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST 116
           ++   +T +E EALLLE  +I++ +P FNI L++  S+PYI IT+  K P +    +   
Sbjct: 1   DLELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYIKITN-EKNPHIEVVFEVKR 59

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
               YFGP+    +  +T++ +++ F L  C         RPCL + +  C GPC  EI 
Sbjct: 60  DGAHYFGPYPGRFSARQTVDLIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCQAEIE 115

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
              Y + +H+  +FL G   N+K+K+  +M  AT   ++E A   RD++ A++       
Sbjct: 116 PAVYKKQIHKISRFLEGDVKNVKDKLLGDMLTATENLEFERAAELRDKIHAINETIEKQH 175

Query: 237 SIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQF 293
            I+      D    Y   N   +   F   G   G+     +   E T  + L+ FL QF
Sbjct: 176 IIFPGLKNRDIIGCYEQDNYLSVFVFFVRNGAINGSKWHVFQV--EKTLQEELATFLNQF 233

Query: 294 YTD--KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRS 351
           Y D     P+ +L++E+ +++ L E         +     P++G K+K ++ A+ NA  +
Sbjct: 234 YEDPNNIQPKELLIAEKIDKSLLNE-------PLRKACLFPQKGSKKKQVDLAIENAKSA 286

Query: 352 HTQKLSTEI 360
           +      + 
Sbjct: 287 YIAYAKMKE 295


>gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [Mycobacterium smegmatis str. MC2
           155]
 gi|118173188|gb|ABK74084.1| DNA polymerase III, epsilon subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 672

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 95/265 (35%), Gaps = 7/265 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY     +  VLYVG A +L++R++ Y    +   R+  M S    +    
Sbjct: 277 ADGLPNRPGVYLFRGPSDEVLYVGTAVDLRRRVRQYFTGADPRARMKEMASLATRVDHVE 336

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
              ++EA + E  ++    P +N   +  K + ++ +T     P L   RD    +    
Sbjct: 337 CAHDLEAGVRELRLLAAHAPPYNRRSKAPKRWWWVALT-DEPFPRLSAVRDPRHRKA--I 393

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF++     +T + L R   +R+C           C   ++  C    T    +++Y  
Sbjct: 394 GPFSARSDAVETADLLARFTGVRTCTSRFGATGIHRCPERELSPCPA--TQSAGADEYAA 451

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSIYN 240
               A   + G +  +   +  ++ +      YE A   RD  A       +        
Sbjct: 452 AARRAADLIDGADSAVLADVLMHIEKLAADSRYEKAARVRDHAAVAIDTLWRGQRLQTLT 511

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQ 265
            +                    +GQ
Sbjct: 512 SLPELVAARRDGNGGWHFAVVRYGQ 536


>gi|167816742|ref|ZP_02448422.1| excinuclease ABC, C subunit [Burkholderia pseudomallei 91]
          Length = 256

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 111/209 (53%), Gaps = 4/209 (1%)

Query: 73  EANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVE 132
           E N+IK L PR+NIL RDDKS+PY+ +T  H+ P +  +R +   +  YFGPF S  AV 
Sbjct: 1   ENNLIKALAPRYNILFRDDKSYPYLKLT-GHRFPRMAYYRGAVDKKNQYFGPFPSAWAVR 59

Query: 133 KTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLS 192
           ++I  LQR F LR+C DSVF +RTRPCLL QI RCS PC G I  E Y   V  A +FL 
Sbjct: 60  ESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDVDNASRFLL 119

Query: 193 GGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYH 249
           G    +  ++ R M+    +  +E A   R+++++L+ + +           +D  ++  
Sbjct: 120 GRQGEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSDVDILAVVA 179

Query: 250 NKNLACIQTCFFHFGQNRGTCTFFLKTDS 278
                C+       G++ G   +F     
Sbjct: 180 QGGRVCVNLAMVRGGRHLGDKAYFPAHVE 208


>gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4]
 gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus
           erythropolis PR4]
          Length = 586

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 93/234 (39%), Gaps = 6/234 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY     +   LY+G A +L++R+++Y   +    R+  M++    +      
Sbjct: 237 NLPRSPGVYLFRGPSDEALYIGTATDLRRRVRNYFTGSETRGRMKEMVALATRVDHVECA 296

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
             +EA + E  ++    P +N   +  K   +I +T     P L   R  +       GP
Sbjct: 297 HALEAGVRELRLLSAHAPPYNRRSKFPKRGWWITLT-DEAFPRLSVVRTPTADS---IGP 352

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKYME 182
           F S     +  +++     LR+C   + R       C   ++  C      E++++ Y  
Sbjct: 353 FTSRGDAVEVADTVAEFSRLRTCTKRLGRGAVHGPDCPARELGACPASWAPELTAQDYAA 412

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                + F  G N    +++   +++ +    +E+A   RDR  A+S       
Sbjct: 413 APETVRGFFRGTNDAPLQQMQARIDELSEHALFENAARLRDRTVAVSTAVRRTQ 466


>gi|270684462|ref|ZP_06222837.1| UvrABC system, protein C [Haemophilus influenzae HK1212]
 gi|270316201|gb|EFA28168.1| UvrABC system, protein C [Haemophilus influenzae HK1212]
          Length = 118

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 2/118 (1%)

Query: 495 ISIAKGPKRSAGMEKFFVKKGE-ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA- 552
           I +AKG  R AG E   + K E  + L      L+ IQ +RDE+H  AI+ HRK+R+KA 
Sbjct: 1   IGVAKGVDRRAGQEVLIISKQEREIHLPDDSLALHLIQHIRDESHNHAISGHRKKRQKAF 60

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
             S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ GIS K+A +I+     +
Sbjct: 61  TQSGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPGISLKLAERIFETLKND 118


>gi|4584815|emb|CAB40816.1| excinuclease ABC, subunit C [Listeria monocytogenes]
          Length = 104

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 1/93 (1%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P+ PG Y M D  G ++YVGKA  L+ R +SY    + + +   ++ +I +  + VT +
Sbjct: 13  LPDQPGCYLMKDRQGTIIYVGKAKILKNRERSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYIL 98
            VEALLLE N+IK+  PRFNI L+DDK++P+I 
Sbjct: 72  NVEALLLEINLIKKHDPRFNIRLKDDKTYPFIK 104


>gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC
           27029]
 gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 584

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 3/236 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P+ PGVY       R LYVG + ++  R++SY  +     RI+ M++    +    
Sbjct: 226 ADGLPKVPGVYIFRAADDRPLYVGTSGDIATRVRSYFTAAEKRARISEMLAAAERVEAVE 285

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I    P +N   +  +   ++ +T     P L   RD +    +Y 
Sbjct: 286 CAHSLEAEVRELRLIAAHAPPYNRRSKYPERQVWLKLT-DEAYPRLSIVRDIAPTDTAYL 344

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181
           GPF S  A E           LR C   + R  T P C L ++ RC  PC   I+ E+Y 
Sbjct: 345 GPFRSRQAAELAAAGFHDAVPLRQCTHRLSRRTTMPACALAELGRCPAPCEHRITPEEYD 404

Query: 182 EFVHEAKKFLSGGNH-NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +      +  +  +   + + +   +   +  E YE A + R RL A+        
Sbjct: 405 DAAATPFRTATSDDPGVVVDALLARIEVLSAAERYEEAAVVRGRLVAVLRAAVRMQ 460


>gi|153831517|ref|ZP_01984184.1| UvrABC system protein C [Vibrio cholerae 623-39]
 gi|148873001|gb|EDL71136.1| UvrABC system protein C [Vibrio cholerae 623-39]
          Length = 264

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 126/229 (55%), Gaps = 5/229 (2%)

Query: 74  ANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
            N IK+  P++N+LLRDDKS+PYI ++  HK P L  HR +   +G YFGP+    AV +
Sbjct: 1   HNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRE 59

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGE-ISSEKYMEFVHEAKKFLS 192
           T++ +Q+ F +R C D+V+ +RTRPCL++QI RC+GPC    IS + Y E VH  + FL 
Sbjct: 60  TLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQ 119

Query: 193 GGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYH 249
           G ++ +   +   M QA+ +  +E A   RD++ A+  +Q       +    +D      
Sbjct: 120 GKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQ 179

Query: 250 NKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP 298
              +ACI       G+  G+ + F K  S+++  ++   FL Q+Y    
Sbjct: 180 ENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 228


>gi|91205184|ref|YP_537539.1| excinuclease ABC subunit C [Rickettsia bellii RML369-C]
 gi|91068728|gb|ABE04450.1| Excinuclease ABC subunit C [Rickettsia bellii RML369-C]
          Length = 307

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 98/298 (32%), Positives = 148/298 (49%), Gaps = 2/298 (0%)

Query: 45  THRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK 104
             RI  M+ Q+  + + VT +E EA LLE  +IK+ +PRFNILLR DKS  YI +   H 
Sbjct: 2   RGRIARMVHQVYLVEYKVTISESEAFLLETQLIKQHQPRFNILLRRDKSASYIKLRSDHD 61

Query: 105 IPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQI 164
            P L K    ++     FGPF S   ++  I  LQ+ F LR+C+DS F  R RPCL ++I
Sbjct: 62  FPTLVKCYLDNSTGNKLFGPFTSGHQIDLIITELQKIFKLRTCSDSDFAFRKRPCLEYEI 121

Query: 165 KRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
            +C  PCTG IS E Y E + +   FLS     L  K+A  M   +    +E A + RDR
Sbjct: 122 GKCFAPCTGNISKEDYAELIEQINDFLSSNIEKLLGKLALKMQALSDHSHFEKAALIRDR 181

Query: 225 LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCF--FHFGQNRGTCTFFLKTDSESTN 282
           +  +   +      Y  +    +   ++ +  Q     +  GQ  G   +    +  +T 
Sbjct: 182 INLIKLSKLRIGKQYEGIIDADVIVIRDDSRFQIKVLLYRGGQKWGEQNYSPIYNQTNTK 241

Query: 283 AQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKI 340
           A++L  F+ QFY  +   + I+++   + +  +  S  K Y  K K  VPK+G K +I
Sbjct: 242 AEVLESFIGQFYQTRKPAKEIIINVPIQNSEPIISSLKKLYNIKTKFIVPKRGSKAQI 299


>gi|61680598|pdb|1YD6|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease
          Domain Of Uvrc From Bacillus Caldotenax
 gi|61680599|pdb|1YD6|B Chain B, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease
          Domain Of Uvrc From Bacillus Caldotenax
 gi|61680600|pdb|1YD6|C Chain C, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease
          Domain Of Uvrc From Bacillus Caldotenax
 gi|61680601|pdb|1YD6|D Chain D, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease
          Domain Of Uvrc From Bacillus Caldotenax
          Length = 99

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 60/89 (67%), Gaps = 1/89 (1%)

Query: 6  MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
          +PE PG Y M D  G V+YVGKA +L++R++SY     H  +   ++ +I +  + VT +
Sbjct: 12 LPEQPGCYLMKDKHGTVIYVGKAKSLKERVRSYFTGT-HDGKTQRLVEEIADFEYIVTSS 70

Query: 66 EVEALLLEANMIKRLKPRFNILLRDDKSF 94
            EAL+LE N+IK+  P++N++L+DDKS+
Sbjct: 71 NAEALILEMNLIKKHDPKYNVMLKDDKSY 99


>gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5]
 gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5]
          Length = 584

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 3/236 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P+ PGVY       R LYVG + ++  R++SY  +     RI+ M++    +    
Sbjct: 226 ADGLPKVPGVYIFRAADDRPLYVGTSGDIATRVRSYFTAAEKRARISEMLAAAERVEAVE 285

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I    P +N   +  +   ++ +T     P L   R  +    +Y 
Sbjct: 286 CAHSLEAEVRELRLIAAHAPPYNRRSKYPERQVWLKLT-DEAYPRLSIVRALAPTDTAYL 344

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181
           GPF S  A E           LR C   + R  T P C L ++ RC  PC  +I+ E+Y 
Sbjct: 345 GPFRSRQAAELAAAGFHDAVPLRQCTHRLSRRTTMPACALAELGRCPAPCEHKITPEEYD 404

Query: 182 EFVHEAKKFLSGGNH-NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           +      +  +  +   + + +   +   +    YE A + R RL A+        
Sbjct: 405 DAAATPFRTATSDDPGVVVDALLARIEVLSAARRYEEAAVVRGRLVAVLRAAVRMQ 460


>gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
           SK121]
 gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
           SK121]
          Length = 608

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 92/234 (39%), Gaps = 6/234 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY     +   LY+G A +L++R+++Y   +    R+  M++    +      
Sbjct: 259 NLPRSPGVYLFRGPSDEALYIGTATDLRRRVRNYFTGSETRGRMKEMVALATRVDHVECA 318

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
             +EA + E  ++    P +N   +  K   +I +T     P L   R  +       GP
Sbjct: 319 HALEAGVRELRLLSAHAPPYNRRSKFPKRGWWITLT-DEAFPRLSVVRTPTADS---IGP 374

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKYME 182
           F S        +++     LR+C   + R       C   ++  C    T EI++  Y  
Sbjct: 375 FTSRADAVDVADTVAEFSRLRTCTKRLGRGAVHGPDCPARELGACPASWTPEINAADYAA 434

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                + F  G N    +++   +++ +    +E+A   RDR  A++       
Sbjct: 435 APEAVRGFFRGTNDAPLQQMQARIDELSAHALFENAARLRDRTVAVATAVRRTQ 488


>gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941]
 gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 560

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 92/195 (47%), Gaps = 8/195 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P   GVY  LD  G VLYVGKA NL+ R+++Y +  +   ++  ++ ++  +RF  
Sbjct: 223 AEGLPASCGVYYFLDGGGGVLYVGKAKNLRARVRTYFNGGDGRRKVRRLVEEVAAVRFRT 282

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG--S 120
           T TE+EALLLEA  I+RL PR+N   R++    YI        P   +        G   
Sbjct: 283 TGTELEALLLEAREIRRLSPRYNTAGREEGGRWYIGFPRGEPYPVPERVSGEEAGDGFLL 342

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
             GP+ S   V+  + +L R F L             PCL  Q+ RC  PC G  S E  
Sbjct: 343 LLGPYRSAGMVDACVEALGRIFPL-----RRCSGEGGPCLYGQMGRC-APCMGMESGEYA 396

Query: 181 MEFVHEAKKFLSGGN 195
            E V      L G +
Sbjct: 397 REVVGGVAALLRGED 411


>gi|282854298|ref|ZP_06263635.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139]
 gi|282583751|gb|EFB89131.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J139]
          Length = 633

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ +PE  GVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 261 AKDLPEKSGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 320

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 321 VKARECSTQLEAGVRELRLIDAHQPRYNRRSRRQGSVWWVTLT-HEAHPRLAVVQRAHHD 379

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 380 SQPPWGPFTSRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LDPH 436

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++    +L +++A+ + + +  E +E A    +    +         
Sbjct: 437 IDYSTIVGFARLAMTDDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 496

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L TD       + +         
Sbjct: 497 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGTDPMPVIDAVCATA-----ET 551

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
                  L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 552 VSASPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTNDLAARVAALHHP 611

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 612 GHNESDEADSQDRQARPQLAQ 632


>gi|314966430|gb|EFT10529.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA2]
 gi|315091670|gb|EFT63646.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA4]
 gi|327327874|gb|EGE69650.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL103PA1]
          Length = 590

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ +PE  GVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 218 AKDLPERSGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 277

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 278 VKARECSTQLEAGVRELRLIDAHQPRYNRRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 336

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 337 SQPPWGPFTSRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LDPH 393

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++    +L +++A+ + + +  E +E A    +    +         
Sbjct: 394 IDYSTIVGFARLAMTDDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 453

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L TD       + +         
Sbjct: 454 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGTDPMPVIDAVCATA-----ET 508

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
                  L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 509 VSASPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTNDLAARVAALHHP 568

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 569 GHNESDEADSQDRQARPQLAQ 589


>gi|314981011|gb|EFT25105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA3]
 gi|315093023|gb|EFT64999.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL060PA1]
          Length = 597

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ +PE  GVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 225 AKDLPERSGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 284

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 285 VKARECSTQLEAGVRELRLIDAHQPRYNRRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 343

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 344 SQPPWGPFTSRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LDPH 400

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++    +L +++A+ + + +  E +E A    +    +         
Sbjct: 401 IDYSTIVGFARLAMTDDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 460

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L TD       + +         
Sbjct: 461 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGTDPMPVIDAVCATA-----ET 515

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
                  L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 516 VSASPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTNDLAARVAALHHP 575

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 576 GHNESDEADSQDRQARPQLAQ 596


>gi|50842208|ref|YP_055435.1| hypothetical protein PPA0720 [Propionibacterium acnes KPA171202]
 gi|50839810|gb|AAT82477.1| DNA polymerase III epsilon subunit (3'-5' exonuclease)
           [Propionibacterium acnes KPA171202]
 gi|314923288|gb|EFS87119.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL001PA1]
 gi|315107037|gb|EFT79013.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA1]
          Length = 633

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ +PE  GVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 261 AKDLPERSGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 320

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 321 VKARECSTQLEAGVRELRLIDAHQPRYNRRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 379

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 380 SQPPWGPFTSRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LDPH 436

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++    +L +++A+ + + +  E +E A    +    +         
Sbjct: 437 IDYSTIVGFARLAMTDDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 496

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L TD       + +         
Sbjct: 497 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGTDPMPVIDAVCATA-----ET 551

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
                  L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 552 VSASPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTNDLAARVAALHHP 611

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 612 GHNESDEADSQDRQARPQLAQ 632


>gi|315103201|gb|EFT75177.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA2]
          Length = 658

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ +PE  GVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 286 AKDLPERSGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 345

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 346 VKARECSTQLEAGVRELRLIDAHQPRYNRRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 404

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 405 SQPPWGPFTSRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LDPH 461

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++    +L +++A+ + + +  E +E A    +    +         
Sbjct: 462 IDYSTIVGFARLAMTDDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 521

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L TD       + +         
Sbjct: 522 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGTDPMPVIDAVCATA-----ET 576

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
                  L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 577 VSASPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTNDLAARVAALHHP 636

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 637 GHNESDEADSQDRQARPQLAQ 657


>gi|145642358|ref|ZP_01797920.1| excinuclease ABC subunit C [Haemophilus influenzae R3021]
 gi|145272959|gb|EDK12843.1| excinuclease ABC subunit C [Haemophilus influenzae 22.4-21]
          Length = 116

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 2/116 (1%)

Query: 497 IAKGPKRSAGMEKFFV-KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AY 554
           +AKG  R AG E   + K+   + L      L+ IQ +RDE+H +AI+ HRK+R+KA   
Sbjct: 1   MAKGVDRRAGQEVLIISKQDREIHLPDDSLALHLIQHIRDESHNYAISGHRKKRQKAFTQ 60

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           S L+ I G+G  R++ LL+  G ++ + +++ + +AS+ GIS K+A  I+     +
Sbjct: 61  SGLETIEGVGAKRRQALLKYLGGLQGVKKATLDEIASVPGISLKLAETIFETLKND 116


>gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM
           44728]
 gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 578

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 93/229 (40%), Gaps = 3/229 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY   D   R LYVG + +L  R++ Y  +     ++  M+     +    
Sbjct: 221 AEGLPHAPGVYVFRDAEDRPLYVGTSVDLAARVRGYFSAGETRGKMRDMLRLAERVEAIE 280

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I   KP FN   +  +   ++ +T     P L   R       ++ 
Sbjct: 281 CAHRLEAGVREVRLIGATKPPFNRRSKYPERVLWLRLT-AEAYPRLSVARTPPEAGSAWL 339

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF S  + E   +++     LR C   +   + +  C L ++  C  PC   I  ++Y 
Sbjct: 340 GPFTSQRSAEYARDAVHDALPLRQCRTRLSPRKVSSACALAEMG-CPAPCQLSIGVDEYG 398

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
           +      + ++     + + +   + Q +    +E A   R RLAA   
Sbjct: 399 KIAAGFAEAVAADPAAIVDPLLARIAQLSDAHRFEEAAEARSRLAAFLR 447


>gi|226229247|ref|YP_002763353.1| putative exonuclease [Gemmatimonas aurantiaca T-27]
 gi|226092438|dbj|BAH40883.1| putative exonuclease [Gemmatimonas aurantiaca T-27]
          Length = 363

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/350 (22%), Positives = 131/350 (37%), Gaps = 38/350 (10%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+M+   G V+YVG++  L+ R+ SY  +    ++   ++     I +  T TE 
Sbjct: 7   NRPGVYRMIGPTGGVIYVGQSRVLRTRLLSYFRAKGRRNKAARILRHAFQIEWEYTNTEF 66

Query: 68  EALLLEANMIKRLKPRFNILL-RDDKSFPYILITDKHKIPALYKH-RDSSTIQGSYFGPF 125
            ALL E  +IK+ +P FN ++  DD    Y+ +T    +P L    R       + FGPF
Sbjct: 67  GALLRELRLIKQYRPHFNSMMVLDDWPRAYVALTGG-NVPGLRVVARSDDPAAVALFGPF 125

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSV-------------------------------FRH 154
             V  + + + +L  T  LR C                                    R 
Sbjct: 126 RRVQQLREAVRALAETMSLRDCTLEEGSLRTPRRTSRAATLWFAGDPDAPTGKVVASGRS 185

Query: 155 RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214
           R   CL   +  C+GPC G   +  Y     + + F  G       ++   M  A  +  
Sbjct: 186 RAPGCLRHDLGTCAGPCIGAGDAVDYRAAAADVRAFFEGRGDVPVRRLEAAMQHAADELA 245

Query: 215 YESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL-YHNKNLACIQTCFFHFGQNRGTCTFF 273
           +E A + RDRL  +  +       +  +D  +  YH    A      + +   RGT    
Sbjct: 246 FERARVLRDRLILVRWLFERLQHFHANVDRLTFRYHAVGHAD---HEWVYLIRRGTVRAE 302

Query: 274 LKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQY 323
           L+     T  +     + + Y         + + + +E  L+   F ++ 
Sbjct: 303 LRAPQTETEHEAFRALVARIYDGPDLSGADIPTHDLDEFFLVASWFRRRP 352


>gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1]
 gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2]
 gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1]
 gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1]
 gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1]
 gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1]
 gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1]
 gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1]
 gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL096PA2]
 gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1]
 gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2]
 gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266]
          Length = 587

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 215 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 274

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 275 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 333

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 334 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 390

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 391 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 450

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 451 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 505

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 506 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 565

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 566 GHNESDETDSQDRQARPQLTP 586


>gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
 gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Propionibacterium acnes SK137]
 gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
 gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Propionibacterium acnes SK137]
 gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1]
 gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2]
 gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1]
 gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1]
 gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3]
 gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1]
 gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1]
 gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2]
 gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2]
 gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1]
 gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2]
          Length = 584

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 387

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 563 GHNESDETDSQDRQARPQLTP 583


>gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
 gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
          Length = 584

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 387

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 563 GHNESDETDSQDRQARPQLTP 583


>gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL096PA3]
          Length = 584

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 387

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 563 GHNESDETDSQDRQARPQLTP 583


>gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1]
          Length = 584

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 387

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 563 GHNESDETDSQDRQARPQLTP 583


>gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1]
 gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1]
 gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1]
 gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1]
 gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1]
 gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1]
 gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3]
 gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1]
 gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL099PA1]
          Length = 590

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 218 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 277

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 278 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 336

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 337 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 393

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 394 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 453

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 454 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 508

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 509 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 568

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 569 GHNESDETDSQDRQARPQLTP 589


>gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2]
          Length = 587

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 215 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 274

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 275 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 333

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 334 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 390

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 391 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 450

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 451 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIEAVCATA-----ET 505

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 506 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 565

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 566 GHNESDETDSQDRQARPQLTP 586


>gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1]
 gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4]
 gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2]
 gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1]
 gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2]
 gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
           acnes HL097PA1]
 gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2]
 gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2]
          Length = 597

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 225 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 284

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 285 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 343

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 344 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 400

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 401 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 460

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 461 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 515

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 516 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 575

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 576 GHNESDETDSQDRQARPQLTP 596


>gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3]
          Length = 604

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 232 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 291

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 292 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 350

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 351 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 407

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 408 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 467

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 468 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIEAVCATA-----ET 522

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 523 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 582

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 583 GHNESDETDSQDRQARPQLTP 603


>gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2]
 gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1]
 gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3]
          Length = 604

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 232 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 291

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 292 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 350

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 351 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 407

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 408 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 467

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 468 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 522

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 523 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 582

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 583 GHNESDETDSQDRQARPQLTP 603


>gi|329770494|ref|ZP_08261872.1| hypothetical protein HMPREF0433_01636 [Gemella sanguinis M325]
 gi|328836243|gb|EGF85912.1| hypothetical protein HMPREF0433_01636 [Gemella sanguinis M325]
          Length = 267

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 123/280 (43%), Gaps = 27/280 (9%)

Query: 332 PKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILK---DFTKKFALPHIPKRIEIYDNS 388
           PK+G  +KI++  + NA+      L  E      L+   +   +         I+ +DNS
Sbjct: 11  PKRGNHKKILDTVVENANYFLNNNLELEELKSRKLQVTLNNIAEKLGVKSINSIDAFDNS 70

Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEEN 448
           +IMG  AV   V           YRKF +        +D   M+ VL R +     N E 
Sbjct: 71  NIMGVDAVSVKVNFTNGKKNTYNYRKFKIKETV--GINDIETMKEVLYRNYKNKKTNTE- 127

Query: 449 LNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGME 508
                            ++I+DGGK  L+AA  ++ K    N I II +AK  K     E
Sbjct: 128 -----------------LIIVDGGKNHLNAAIEIVHKKLGLNYIKIIGLAKNDKHIT--E 168

Query: 509 KFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLR 567
                  E +          F+++++DE HRFAIT HR  + K  + S LD I GIG +R
Sbjct: 169 YIITDDYEIIEFPKTSAEYLFLKQIQDEVHRFAITYHRATKTKNMFNSSLDNIEGIGKVR 228

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           K +LL+SF +++ I  +  E L ++ GI K    K+ N  
Sbjct: 229 KNILLKSFASIEEIKNAPEEKLIAL-GIPKNAIIKLKNEL 267


>gi|315932393|gb|EFV11336.1| uvrB/uvrC motif family protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 405

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 110/425 (25%), Positives = 183/425 (43%), Gaps = 39/425 (9%)

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHN 250
               L + + + M      E+YE A   RD++  +  ++   +         + F+L   
Sbjct: 6   NPSILIKNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLEVKVEIDIAKLEDFEVFALAFE 65

Query: 251 KNLACIQTCFFHFGQNR--GTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP--ENILLS 306
            ++          G+     +    +K D +    +I    + + ++         I + 
Sbjct: 66  NSMLSTLRFVVQNGKIISVNSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVY 125

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMIL 366
           EE E+  LLE    +++  K+ I +PK GEKR+I + A  NA  +       +     I 
Sbjct: 126 EEFEDRMLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQNALLNIE--KEQKNHDFTIQ 183

Query: 367 KDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
           K+    F L ++P  IEI+DNSH+ G + VG MV    N + K++YRKF+L       ++
Sbjct: 184 KELKSYFELENLPNDIEIFDNSHLQGVANVGAMVTYSANSWDKSKYRKFHLK-----HKN 238

Query: 427 DCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKL 486
           D   MR VL R                +  ++     PD+ ++DGGK  L  A+ ++   
Sbjct: 239 DYDQMREVLMR----------------RALDFDKIPPPDLWLIDGGKALLDLAKEIIVSS 282

Query: 487 NVENRITIISI----AKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
                I  IS     AK  +   G             L++ D  L F+Q+LRDEAHRFAI
Sbjct: 283 GANVDILAISKEKIDAKAHRAKGGARDKIHSLKGEFSLSINDKKLQFLQKLRDEAHRFAI 342

Query: 543 TTHRKRRKKAAY--SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + H+  +KK     S L  + G+     + LL  +G  + I ++  + LA + G  KK+A
Sbjct: 343 SFHQNTKKKQDLNSSKLVNL-GLSSGVIQKLLAYYGNFESIYKADFKDLAMLVG--KKVA 399

Query: 601 CKIYN 605
            KI  
Sbjct: 400 QKIKE 404


>gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152]
 gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152]
          Length = 598

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 4/201 (1%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY     +  VLY+G A NL++R+++Y   +    R+  M++    +   V   
Sbjct: 224 LPTAPGVYLFRGPSDEVLYIGTAVNLRRRVRTYFTGSETRGRMKEMVALATRVDHVVCAH 283

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EA + E  ++    P +N   +  K   +I +T     P L   R  +       GPF
Sbjct: 284 GLEAGVRELRLLVAHAPPYNRRSKFPKRVWWITLT-DEAFPRLAVVRTPTPDA---LGPF 339

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            S         +L     LR+C   + R     C    +  C        ++ +Y     
Sbjct: 340 TSRQDAVDVAATLAEHAGLRTCTTRLARSAVHDCPPSVVGGCPAARETPCTAAEYAPAPA 399

Query: 186 EAKKFLSGGNHNLKEKIARNM 206
             +  ++G    +   +   +
Sbjct: 400 AVRDLVAGRCDTVLHTMRARI 420


>gi|152967191|ref|YP_001362975.1| hypothetical protein Krad_3247 [Kineococcus radiotolerans SRS30216]
 gi|151361708|gb|ABS04711.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 601

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 100/240 (41%), Gaps = 12/240 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVYQ  D AGRVLYVG + ++ +R+ SY  ++    R+T M+   + +   V  T
Sbjct: 229 LPSAPGVYQFRDAAGRVLYVGTSVDVHRRVSSYFTASETRPRMTEMVRLASTVVPVVCQT 288

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI---QGSYF 122
            +EA + E  +I    P +N   +  +   ++ +T     P L   +           Y 
Sbjct: 289 PLEARVRELRLIAEHAPPYNRRSKAPEKVTWVKLTT-DAWPRLSLVKQVRDDVAAGAEYL 347

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT----RPCLLFQIKRCSGPC----TGE 174
           GPF S    E  + +L  T  LR C   + R  T      C+L +I RC  PC     G 
Sbjct: 348 GPFRSTRTAELAVEALHETHPLRQCTRRIPRTPTGEGPGACVLAEIGRCGAPCLGTGRGG 407

Query: 175 ISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
             +E Y   V E +  L         +    + +   ++ YE A   RDRL A       
Sbjct: 408 QDAESYAAVVAEVRAALRSDATTALTRGRERLRELAGQQRYEEAATTRDRLEAFLTAAER 467


>gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3]
          Length = 584

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ R     C L ++ RCS PC      
Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRQPDG-CPLAEMGRCSAPC--LNPY 387

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 563 GHNESDETDSQDRQARPQLTP 583


>gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2]
          Length = 604

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 232 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 291

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 292 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 350

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ R     C L ++ RCS PC      
Sbjct: 351 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRQPDG-CPLAEMGRCSAPC--LNPY 407

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 408 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 467

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 468 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 522

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 523 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 582

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 583 GHNESDETDSQDRQARPQLTP 603


>gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2]
          Length = 597

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 225 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 284

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 285 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 343

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ R     C L ++ RCS PC      
Sbjct: 344 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRQPDG-CPLAEMGRCSAPC--LNPY 400

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 401 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 460

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 461 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 515

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 516 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 575

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 576 GHNESDETDSQDRQARPQLTP 596


>gi|108761215|ref|YP_634259.1| GIY-YIG catalytic domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108465095|gb|ABF90280.1| GIY-YIG catalytic domain protein [Myxococcus xanthus DK 1622]
          Length = 404

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 13/233 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PGVY+ML  +  VLYVGK+  ++ R+ SY  +  H  +   +I+  + I +  T +E 
Sbjct: 61  NRPGVYRMLGPSDEVLYVGKSVRVRTRLLSYFRAEAH-EKAAEIIAHAHRIVWEYTPSEF 119

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFAS 127
            ALL E  +IK  +P +N+  + D+   +I +T +  +P L     +S+ +G Y+GPF  
Sbjct: 120 AALLHEFRLIKSQRPLYNVEHKRDRGHCFIHLT-REPVPRLRVVSRASSERGDYYGPFHG 178

Query: 128 VDAVEKTINSLQRTFFLRSCADSV----------FRHRTRP-CLLFQIKRCSGPCTGEIS 176
             A+   + ++     LR CA             F  +  P C+  Q+ RC  PC G  +
Sbjct: 179 RSAMSDVVRAVSDLLELRDCAADTPMRLADQGQLFPLKQEPLCMRGQLSRCLAPCAGGCT 238

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229
             +Y   V +A+ FL G +      +   M  A  +  +E A   RDR   L 
Sbjct: 239 RAEYDARVAQARAFLEGTSDTPLTLLRERMALAARRLLFEYAAELRDRAERLE 291


>gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2]
          Length = 584

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 212 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 271

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 272 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 330

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ R+    C L ++ RCS PC      
Sbjct: 331 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRYPDG-CPLAEMGRCSAPC--LNPY 387

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 388 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 447

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 448 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 502

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 503 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 562

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 563 GHNESDETDSQDRQARPQLTP 583


>gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2]
          Length = 590

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 218 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 277

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 278 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 336

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ R+    C L ++ RCS PC      
Sbjct: 337 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRYPDG-CPLAEMGRCSAPC--LNPY 393

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 394 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 453

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 454 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 508

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 509 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 568

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 569 GHNESDETDSQDRQARPQLTP 589


>gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1]
          Length = 597

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD        VLYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 225 AKDLTEGPGVYWFCLDKPAPAHPEVLYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 284

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 285 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 343

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 344 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 400

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 401 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 460

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 461 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCCLGIDPMPIIDAVCATA-----ET 515

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 516 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 575

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 576 GHNESDETDSQDRQARPQLTP 596


>gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 470

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 5/173 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +PE PGVY         LY+GK+ N++ R+ S+   ++ + +   +  ++ +I +  
Sbjct: 194 LDDIPEGPGVYLFYGDNQLPLYIGKSINIRSRVLSHFSGDHASTKEMRISQEVKHIEWIE 253

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI-PALYKHRDSSTIQ--- 118
           T  E  AL+LE+ ++K  +P +N  LR ++      +   H   P L   R+        
Sbjct: 254 TAGEFSALMLESRLVKERQPIYNRRLRRERQLCSWRLAASHDARPLLTLVREEEIDPPEL 313

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
           G  FG F S     + +  +     L             PC   Q+++C G C
Sbjct: 314 GQLFGTFRSKRQAVEVLRQIAENHALCP-KVLGLESGKGPCFSHQLRKCKGVC 365


>gi|119866029|gb|ABM05485.1| excinuclease ABC subunit C [Rhodiola fastigiata]
          Length = 133

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 7/138 (5%)

Query: 455 KQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKK 514
            Q       PD+V++DGGKGQL+AA   L  L ++  + I S+AK  +     E F + +
Sbjct: 2   SQVDKQKPLPDLVLIDGGKGQLNAAAETLNALGLQ-SLPIASLAKREE-----EIFLLGQ 55

Query: 515 GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRK-KAAYSPLDEINGIGPLRKRLLLQ 573
            ++L L  R P L  +Q+ RDEAHRFAIT  RKRR  +   S L  I G+G  ++R LL 
Sbjct: 56  SDSLRLPRRSPALRMLQQARDEAHRFAITFRRKRRAVRTITSELLRIPGVGESKRRALLI 115

Query: 574 SFGTVKMISRSSPETLAS 591
           +FG+++ +  ++P+ LAS
Sbjct: 116 AFGSIQAVREATPDQLAS 133


>gi|158319409|ref|YP_001511916.1| excinuclease ABC subunit C [Alkaliphilus oremlandii OhILAs]
 gi|158139608|gb|ABW17920.1| Excinuclease ABC C subunit domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 338

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 15/233 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + MP  PG+YQM DI G ++YVGK+ +L+ R++SY +  + + +I  M+  I +I + 
Sbjct: 11  KIDHMPLKPGIYQMKDIEGNIIYVGKSKSLRSRVRSYFYGEHESEKINRMVFHIEDIHYI 70

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT T +EA +LE  +IK+L+P +N   ++D+ + Y+ I                  +G Y
Sbjct: 71  VTDTHLEAQILECALIKKLQPIYNQQFKNDQRYMYLKI---EAYNRFKPLSAVYEKEGHY 127

Query: 122 -FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
             GPF + + +  T+   Q  + L                 ++      P + E    + 
Sbjct: 128 CLGPFRNKNVLFDTVQFFQNIYPLCKNDHG-----------YEFIYKIFPESIEKEGFEI 176

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
                               ++   MN   L+  +E A ++RD +  ++++ +
Sbjct: 177 NRNSLIEIFSNKDCMEGFITELQTQMNGFALELRFEMATMYRDMIHHMNYLYH 229


>gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 473

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 5/173 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +PE PGVY         LY+GK+ N++ R+ S+   ++ + +   +  ++ +I +  
Sbjct: 194 LDDIPEGPGVYLFYGDNQLPLYIGKSINIRSRVLSHFSGDHASTKEMRISQEVKHIEWIE 253

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI-PALYKHRDSSTIQ--- 118
           T  E  AL+LE+ ++K  +P +N  LR ++      +   +   P L   R+        
Sbjct: 254 TAGEFGALMLESRLVKERQPIYNRRLRRERQLCSWRLAASYDARPLLTLVREEEIDPPEL 313

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
           G  FG F S     + +  +     L             PC   Q+++C G C
Sbjct: 314 GQLFGTFRSKRQAVEVLRQIAENHALCPKVLG-LESGKGPCFSHQLRKCKGVC 365


>gi|257416271|ref|ZP_05593265.1| excinuclease subunit ABC [Enterococcus faecalis AR01/DG]
 gi|257158099|gb|EEU88059.1| excinuclease subunit ABC [Enterococcus faecalis ARO1/DG]
          Length = 320

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +S+ H+ +   ++ QI +   
Sbjct: 8   KARQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSHQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGQEPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|257079194|ref|ZP_05573555.1| predicted protein [Enterococcus faecalis JH1]
 gi|294779407|ref|ZP_06744808.1| GIY-YIG catalytic domain protein [Enterococcus faecalis PC1.1]
 gi|256987224|gb|EEU74526.1| predicted protein [Enterococcus faecalis JH1]
 gi|294453536|gb|EFG21937.1| GIY-YIG catalytic domain protein [Enterococcus faecalis PC1.1]
          Length = 320

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKQIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|257422383|ref|ZP_05599373.1| endo/excinuclease amino terminal domain-containing protein
           [Enterococcus faecalis X98]
 gi|257164207|gb|EEU94167.1| endo/excinuclease amino terminal domain-containing protein
           [Enterococcus faecalis X98]
 gi|315156100|gb|EFU00117.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0043]
          Length = 320

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDNIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|29376299|ref|NP_815453.1| endo/excinuclease amino terminal domain-containing protein
           [Enterococcus faecalis V583]
 gi|227518938|ref|ZP_03948987.1| excision endonuclease subunit UvrC [Enterococcus faecalis TX0104]
 gi|227553557|ref|ZP_03983606.1| excision endonuclease subunit UvrC [Enterococcus faecalis HH22]
 gi|256959157|ref|ZP_05563328.1| predicted protein [Enterococcus faecalis DS5]
 gi|256961748|ref|ZP_05565919.1| predicted protein [Enterococcus faecalis Merz96]
 gi|256964944|ref|ZP_05569115.1| predicted protein [Enterococcus faecalis HIP11704]
 gi|257085006|ref|ZP_05579367.1| endo/excinuclease [Enterococcus faecalis Fly1]
 gi|293383455|ref|ZP_06629368.1| endo/excinuclease amino domain protein [Enterococcus faecalis R712]
 gi|293388891|ref|ZP_06633376.1| endo/excinuclease amino domain protein [Enterococcus faecalis S613]
 gi|307273040|ref|ZP_07554286.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0855]
 gi|312907716|ref|ZP_07766707.1| GIY-YIG catalytic domain protein [Enterococcus faecalis DAPTO 512]
 gi|312910334|ref|ZP_07769181.1| GIY-YIG catalytic domain protein [Enterococcus faecalis DAPTO 516]
 gi|29343762|gb|AAO81523.1| endo/excinuclease amino terminal domain protein [Enterococcus
           faecalis V583]
 gi|227073627|gb|EEI11590.1| excision endonuclease subunit UvrC [Enterococcus faecalis TX0104]
 gi|227177314|gb|EEI58286.1| excision endonuclease subunit UvrC [Enterococcus faecalis HH22]
 gi|256949653|gb|EEU66285.1| predicted protein [Enterococcus faecalis DS5]
 gi|256952244|gb|EEU68876.1| predicted protein [Enterococcus faecalis Merz96]
 gi|256955440|gb|EEU72072.1| predicted protein [Enterococcus faecalis HIP11704]
 gi|256993036|gb|EEU80338.1| endo/excinuclease [Enterococcus faecalis Fly1]
 gi|291079246|gb|EFE16610.1| endo/excinuclease amino domain protein [Enterococcus faecalis R712]
 gi|291081672|gb|EFE18635.1| endo/excinuclease amino domain protein [Enterococcus faecalis S613]
 gi|306510025|gb|EFM79049.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0855]
 gi|310626744|gb|EFQ10027.1| GIY-YIG catalytic domain protein [Enterococcus faecalis DAPTO 512]
 gi|311289607|gb|EFQ68163.1| GIY-YIG catalytic domain protein [Enterococcus faecalis DAPTO 516]
 gi|315037160|gb|EFT49092.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0027]
 gi|315576041|gb|EFU88232.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0309B]
 gi|315580616|gb|EFU92807.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0309A]
 gi|327535314|gb|AEA94148.1| endo/excinuclease amino domain protein [Enterococcus faecalis
           OG1RF]
          Length = 320

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|256762736|ref|ZP_05503316.1| predicted protein [Enterococcus faecalis T3]
 gi|257090065|ref|ZP_05584426.1| predicted protein [Enterococcus faecalis CH188]
 gi|307269562|ref|ZP_07550901.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX4248]
 gi|307289289|ref|ZP_07569245.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0109]
 gi|312903499|ref|ZP_07762679.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0635]
 gi|256683987|gb|EEU23682.1| predicted protein [Enterococcus faecalis T3]
 gi|256998877|gb|EEU85397.1| predicted protein [Enterococcus faecalis CH188]
 gi|306499998|gb|EFM69359.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0109]
 gi|306514182|gb|EFM82758.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX4248]
 gi|310633375|gb|EFQ16658.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0635]
 gi|315147446|gb|EFT91462.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX4244]
 gi|315162434|gb|EFU06451.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0645]
 gi|315163903|gb|EFU07920.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX1302]
 gi|315167289|gb|EFU11306.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX1341]
 gi|315577805|gb|EFU89996.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0630]
          Length = 320

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|255975669|ref|ZP_05426255.1| predicted protein [Enterococcus faecalis T2]
 gi|307277886|ref|ZP_07558970.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0860]
 gi|255968541|gb|EET99163.1| predicted protein [Enterococcus faecalis T2]
 gi|306505283|gb|EFM74469.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0860]
          Length = 320

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKKN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|297171376|gb|ADI22380.1| nuclease subunit of the excinuclease complex [uncultured nuHF2
           cluster bacterium HF0500_02A10]
          Length = 134

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 51  MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110
           MI QI  +   V  +E E+L+LEAN+IK  KPRFNI LRDDK +PYI +T +   P ++ 
Sbjct: 1   MIRQIVEVDTIVVGSETESLILEANLIKEHKPRFNIQLRDDKRYPYIKVTIQEAFPRVFV 60

Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCA-DSVFRHRTRPCLLFQIKRCSG 169
            R        YFGP+ SV  +   +  ++R + +RSC  D       RPCL + I    G
Sbjct: 61  TRRLEDDGSQYFGPYTSVGLMRDALEVVKRLYTVRSCRYDLPKESPERPCLDYHIGPLLG 120

Query: 170 PCTG 173
               
Sbjct: 121 SLCR 124


>gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1]
          Length = 597

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD         LYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 225 AKDLTEGPGVYWFCLDKPAPAHPEALYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 284

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 285 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAHRD 343

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 344 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 400

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 401 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 460

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 461 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 515

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 516 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 575

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 576 GHNESDETDSQDRQARPQLTP 596


>gi|257883027|ref|ZP_05662680.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,502]
 gi|257818685|gb|EEV46013.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,502]
          Length = 301

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M D  G+V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 5   KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ IT+K            +     
Sbjct: 65  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L             ++    +
Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 164

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A + +  +  +++      
Sbjct: 165 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220


>gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247]
 gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM
           43247]
          Length = 595

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 9/239 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++++P  PGVY     +  VLYVG A +L++R++SY   ++   RI  M+   + +    
Sbjct: 232 ADKIPARPGVYLFRGPSDEVLYVGTAVDLRRRVRSYFTGSDPRRRIGEMVRLAHRVDHVE 291

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  ++    P +N   +      ++++T   + P L   R  S       
Sbjct: 292 CSHGLEAAVRELRLLGAHAPAYNRKSKQPHRGWWVVLT-AERFPRLKVSRSPSADT---I 347

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLL-----FQIKRCSGPCTGEISS 177
           GP  +        + +     LR+C           C L       +  C        + 
Sbjct: 348 GPVGNRTTAATIADVISAAAGLRTCTGRAGADGYHWCRLPEPGAATVGLCHASSRRPQTL 407

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
             Y+  V  A   +SG +  L   +A  +  A+  + +E+A  HRDRLA          
Sbjct: 408 TDYLPRVTAAAALMSGADDALLTALADRVVAASAAQMFETAARHRDRLALTIDALARCQ 466


>gi|257419472|ref|ZP_05596466.1| predicted protein [Enterococcus faecalis T11]
 gi|257161300|gb|EEU91260.1| predicted protein [Enterococcus faecalis T11]
          Length = 320

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M  A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQDAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|312901845|ref|ZP_07761110.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0470]
 gi|311291038|gb|EFQ69594.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0470]
          Length = 320

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    +      L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNHLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1]
          Length = 587

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 141/381 (37%), Gaps = 15/381 (3%)

Query: 3   SEQMPECPGVYQM-LDI----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
           ++ + E PGVY   LD         LYVGK+ N+++R+  Y  ++    R+  M+     
Sbjct: 215 AKDLTEGPGVYWFCLDKPAPAHPEALYVGKSVNIRRRVSQYFTASETRRRMDEMVRIATG 274

Query: 58  IRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI 117
           ++     T++EA + E  +I   +PR+N   R   S  ++ +T     P L   + +   
Sbjct: 275 VKARECSTQLEAGVRELRLIDAHQPRYNHRSRRQGSVWWVTLT-HEAHPRLAVVQRAPRD 333

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +GPF S  A  +    L   F LR C+ ++ RH    C L ++ RCS PC      
Sbjct: 334 SQPPWGPFISRQAATRAAIILAEAFGLRQCSGAMSRHPDG-CPLAEMGRCSAPC--LNPY 390

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDS 237
             Y   V  A+  ++G   +L +++A+ + + +  E +E A    +    +         
Sbjct: 391 VDYSTIVGFARLAMTGDVRDLTDRLAQRIARLSAAERFEEAAEFTEDAQEVLRATRRRSR 450

Query: 238 IYNRMDC-FSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTD 296
           + +   C   +   ++ A  +      G+  G     L  D       + +         
Sbjct: 451 LVSLASCPEIVAARRDGASWEIHVIRHGRLAGAGRCRLGIDPMPIIDAVCATA-----ET 505

Query: 297 KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKL 356
              P   L +   EE  L+   F +     V +           ++   + A  +     
Sbjct: 506 VSAPPAGLPACTIEEAELVASWFEEPGVRLVDVIGEWSWPAHCWMDTDDLAARVAALHHP 565

Query: 357 STEISHQMILKDFTKKFALPH 377
               S +   +D   +  L  
Sbjct: 566 GHNESDETDSQDRQARPQLTP 586


>gi|261208993|ref|ZP_05923398.1| excinuclease ABC [Enterococcus faecium TC 6]
 gi|294614993|ref|ZP_06694882.1| excinuclease ABC, C subunit [Enterococcus faecium E1636]
 gi|294619083|ref|ZP_06698578.1| excinuclease ABC, C subunit [Enterococcus faecium E1679]
 gi|260077032|gb|EEW64754.1| excinuclease ABC [Enterococcus faecium TC 6]
 gi|291592124|gb|EFF23744.1| excinuclease ABC, C subunit [Enterococcus faecium E1636]
 gi|291594744|gb|EFF26126.1| excinuclease ABC, C subunit [Enterococcus faecium E1679]
          Length = 321

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 114/304 (37%), Gaps = 21/304 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M D  G+V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 5   KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ IT+K            +     
Sbjct: 65  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L             ++    +
Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRAQLPDLQEMTF 164

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
            +   E +    G N  L   + +       + ++E A + +  +  +++         +
Sbjct: 165 EQKKKELQGLFQGQNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQEQKH 224

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
            +   SL  +  LA  ++   H+    G     +   ++ +               +   
Sbjct: 225 FLRTPSLTFSMPLAADESQKKHYLVCYGQLAETMIASADVSPDFYYEKKEAHLSLKRQLS 284

Query: 301 ENIL 304
           +  +
Sbjct: 285 KEEI 288


>gi|329571851|gb|EGG53529.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX1467]
          Length = 245

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|258614415|ref|ZP_05712185.1| endo/excinuclease amino terminal domain-containing protein
           [Enterococcus faecium DO]
          Length = 336

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M D  G+V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 20  KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 79

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ IT+K            +     
Sbjct: 80  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 132

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L             ++    +
Sbjct: 133 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 179

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A + +  +  +++      
Sbjct: 180 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 235


>gi|229549829|ref|ZP_04438554.1| excision endonuclease subunit UvrC [Enterococcus faecalis ATCC
           29200]
 gi|255972556|ref|ZP_05423142.1| predicted protein [Enterococcus faecalis T1]
 gi|312951680|ref|ZP_07770575.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0102]
 gi|229305098|gb|EEN71094.1| excision endonuclease subunit UvrC [Enterococcus faecalis ATCC
           29200]
 gi|255963574|gb|EET96050.1| predicted protein [Enterococcus faecalis T1]
 gi|310630397|gb|EFQ13680.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0102]
 gi|315152299|gb|EFT96315.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0031]
 gi|315158259|gb|EFU02276.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0312]
 gi|323480908|gb|ADX80347.1| excision endonuclease subunit UvrC [Enterococcus faecalis 62]
          Length = 320

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKKN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|229545638|ref|ZP_04434363.1| excision endonuclease subunit UvrC [Enterococcus faecalis TX1322]
 gi|256619244|ref|ZP_05476090.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|256853304|ref|ZP_05558674.1| endo/excinuclease amino terminal domain-containing protein
           [Enterococcus faecalis T8]
 gi|300860859|ref|ZP_07106946.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|307275789|ref|ZP_07556928.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX2134]
 gi|307291812|ref|ZP_07571683.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0411]
 gi|229309206|gb|EEN75193.1| excision endonuclease subunit UvrC [Enterococcus faecalis TX1322]
 gi|256598771|gb|EEU17947.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|256711763|gb|EEU26801.1| endo/excinuclease amino terminal domain-containing protein
           [Enterococcus faecalis T8]
 gi|300849898|gb|EFK77648.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|306497078|gb|EFM66624.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0411]
 gi|306507481|gb|EFM76612.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX2134]
 gi|315031990|gb|EFT43922.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0017]
 gi|315144989|gb|EFT89005.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX2141]
 gi|315174808|gb|EFU18825.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX1346]
          Length = 320

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 589

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 109/314 (34%), Gaps = 9/314 (2%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             PG+Y+ +  AG VLYVG + NL+ R++ Y  +     R+  M           T T +
Sbjct: 246 RSPGIYRFIGPAGDVLYVGSSSNLRARVRQYFTAAETRKRMAEMTDLAERAEVDETPTVL 305

Query: 68  EALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFGPFA 126
           EA +LE   I    P +N   R   + P++ +T     P L      +     +  GPF 
Sbjct: 306 EARILELRQIAEFDPPYNRRSRRPDNRPWLTLT-DEAHPRLKVTASLAMEDAAAALGPFG 364

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRH---RTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
           S  A  +    +     LR+C   +      R  PC L  + RCS PC      +     
Sbjct: 365 SRKAARQAAELVADDARLRTCTTRLPAKPSGRKAPCHLHAMGRCSAPCALPGDPDG--PS 422

Query: 184 VHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN--R 241
           +  A   L G    L E+  + +      E +E A + RDRL  +       + I     
Sbjct: 423 LAAASSILGGDLDGLWERSMQRLASLAAAERFEQAAVERDRLRCVIDAARRRERILPLLA 482

Query: 242 MDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPE 301
                     +         H+G+   T       D     A++++   +      P   
Sbjct: 483 ARQIVGARRDDDGSWDVAVIHWGRLAATGRCPGNADPRELAAELVASASQTDRPAAPGDV 542

Query: 302 NILLSEEAEETSLL 315
             +   E     L 
Sbjct: 543 ASIEETELLAAWLW 556


>gi|257082375|ref|ZP_05576736.1| predicted protein [Enterococcus faecalis E1Sol]
 gi|256990405|gb|EEU77707.1| predicted protein [Enterococcus faecalis E1Sol]
          Length = 320

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +S+ H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSHQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|315169641|gb|EFU13658.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX1342]
          Length = 320

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I + +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIHQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|69245723|ref|ZP_00603589.1| Excinuclease ABC, C subunit, N-terminal [Enterococcus faecium DO]
 gi|257880226|ref|ZP_05659879.1| excinuclease ABC [Enterococcus faecium 1,230,933]
 gi|257891390|ref|ZP_05671043.1| excinuclease ABC [Enterococcus faecium 1,231,410]
 gi|260560476|ref|ZP_05832650.1| excinuclease ABC [Enterococcus faecium C68]
 gi|293563295|ref|ZP_06677745.1| endo/excinuclease amino domain protein [Enterococcus faecium E1162]
 gi|294621378|ref|ZP_06700550.1| endo/excinuclease amino domain protein [Enterococcus faecium U0317]
 gi|314939232|ref|ZP_07846486.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133a04]
 gi|314942050|ref|ZP_07848908.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133C]
 gi|314951231|ref|ZP_07854286.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133A]
 gi|314991654|ref|ZP_07857124.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133B]
 gi|314996780|ref|ZP_07861793.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133a01]
 gi|68195616|gb|EAN10056.1| Excinuclease ABC, C subunit, N-terminal [Enterococcus faecium DO]
 gi|257814454|gb|EEV43212.1| excinuclease ABC [Enterococcus faecium 1,230,933]
 gi|257827750|gb|EEV54376.1| excinuclease ABC [Enterococcus faecium 1,231,410]
 gi|260073478|gb|EEW61806.1| excinuclease ABC [Enterococcus faecium C68]
 gi|291599025|gb|EFF30070.1| endo/excinuclease amino domain protein [Enterococcus faecium U0317]
 gi|291604747|gb|EFF34231.1| endo/excinuclease amino domain protein [Enterococcus faecium E1162]
 gi|313589075|gb|EFR67920.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133a01]
 gi|313593745|gb|EFR72590.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133B]
 gi|313596583|gb|EFR75428.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133A]
 gi|313599176|gb|EFR78021.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133C]
 gi|313641483|gb|EFS06063.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0133a04]
          Length = 321

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M D  G+V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 5   KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ IT+K            +     
Sbjct: 65  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L             ++    +
Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 164

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A + +  +  +++      
Sbjct: 165 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220


>gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 462

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 5/182 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +PE PGVY         LY+GK+ NL+ R+ S+ +S++   R   +  +I +I +  T
Sbjct: 195 DDIPEAPGVYIFYGENDLPLYIGKSVNLRNRVLSHFNSDHARARGMRITQEIKHIEWIET 254

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK-HKIPALYKHRD---SSTIQG 119
             E  ALLLEA +IK  +P  N  LR ++      +     + P L        +  + G
Sbjct: 255 AGEFGALLLEARLIKERQPIHNRQLRREQQLCSWHLAPSATQHPLLTLVAQDEMTQDLLG 314

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
             +G + +     + +  L     L             PC  +Q+KRC G C  +   E 
Sbjct: 315 ELYGTYRTKRQAIEALRQLALVHGLCPQYLG-LESGNGPCFSYQLKRCKGVCCHQEPPEM 373

Query: 180 YM 181
           + 
Sbjct: 374 HY 375


>gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 586

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 6/209 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +  +P   GVY        VLYVG + +L++R++SY  +     R+  M+S    +   V
Sbjct: 230 ARDVPSAAGVYLFRGARDEVLYVGTSGDLRRRVRSYFTAAERRRRMRDMVSLAERVDTIV 289

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I   +PR+N   R+     ++ +      P L              
Sbjct: 290 CAHALEAGVRELRLIAAHRPRYNRRSRNPGRAWWV-VPTDEAFPRLSVVTTPRAPA---L 345

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHR--TRPCLLFQIKRCSGPCTGEISSEKY 180
           GPF S     + + +L     LRSC   +        PC+L ++ RC  PC G  S  +Y
Sbjct: 346 GPFGSRRGATEAVETLLDALPLRSCTQRIPARSPAASPCVLHELGRCRAPCAGLQSVAEY 405

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQA 209
              VH  +  ++G +     ++A  +   
Sbjct: 406 APGVHALQGLVAGADDAPLRRLADRVEAL 434


>gi|314948377|ref|ZP_07851766.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0082]
 gi|313645169|gb|EFS09749.1| GIY-YIG catalytic domain protein [Enterococcus faecium TX0082]
          Length = 321

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M D  G+V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 5   KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMILHITDFDF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ IT+K            +     
Sbjct: 65  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L             ++    +
Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 164

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A + +  +  +++      
Sbjct: 165 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220


>gi|257087035|ref|ZP_05581396.1| excinuclease ABC [Enterococcus faecalis D6]
 gi|256995065|gb|EEU82367.1| excinuclease ABC [Enterococcus faecalis D6]
 gi|315027906|gb|EFT39838.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX2137]
          Length = 320

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  PGVY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +   K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEVAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|293556680|ref|ZP_06675244.1| endo/excinuclease amino domain protein [Enterococcus faecium E1039]
 gi|291601142|gb|EFF31430.1| endo/excinuclease amino domain protein [Enterococcus faecium E1039]
          Length = 321

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M D  G+V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 5   KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ IT+K            +     
Sbjct: 65  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L             ++    +
Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRAQLPDLQEMTF 164

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A + +  +  +++      
Sbjct: 165 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220


>gi|293569290|ref|ZP_06680588.1| endo/excinuclease amino domain protein [Enterococcus faecium E1071]
 gi|291587996|gb|EFF19846.1| endo/excinuclease amino domain protein [Enterococcus faecium E1071]
          Length = 321

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M D  G+V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 5   KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ IT+K            +     
Sbjct: 65  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L             ++    +
Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRAQLPDLQEMTF 164

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A +    +  +++      
Sbjct: 165 EQKKKELQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLHKDIELVTYFIRRIQ 220


>gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 481

 Score =  156 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 8/180 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P+ PGVY M       LY+GK+ +L++R+  +  +++   +   +   + +I +  T
Sbjct: 210 DEIPDTPGVYLMYGDGALPLYIGKSIHLRRRVLDHFRNDHREQKEMRLAQAVQHIDWIET 269

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDK---SFPYILITDKHKIPALYKHRDSSTIQGS 120
             E+ ALLLE+ +IK L P FN  LR  +   ++ ++      + P L   R    I GS
Sbjct: 270 PGELSALLLESRLIKTLSPLFNRKLRRTRDLCTWHWVF--GNVQPPRLL--RGDDVIPGS 325

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF      ++ +  L     L        +  + PC   QIKRC G C G+ S  ++
Sbjct: 326 CYGPFRHATQAKQVLRELAAKHGLCDIRLG-LQSGSGPCFAHQIKRCRGVCVGQESPMQH 384


>gi|257869161|ref|ZP_05648814.1| excinuclease ABC [Enterococcus gallinarum EG2]
 gi|257803325|gb|EEV32147.1| excinuclease ABC [Enterococcus gallinarum EG2]
          Length = 318

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 94/234 (40%), Gaps = 21/234 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
            +  +P+ PG+Y M D  G +LYVGKA  L++R+ SY   N  HT++I  ++  + +   
Sbjct: 13  KANALPQKPGIYLMKDSHGGILYVGKAKQLKQRVSSYFRKNTQHTNKILRLVHNVVDFET 72

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
               TE++ALLLE  +I++ +P +N  + +  ++ YI     +        R +   + +
Sbjct: 73  IFVDTELDALLLECQLIQQHRPIYNRQMTNFLNYQYIRFDAGN------IVRTNEAAEDA 126

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
             GPF     + + I  L  T+ L S                            + +   
Sbjct: 127 -IGPFRRSKQLPEIIEILTETYQLPSVNPYKLLS-------------LSKQLPLMQTIPL 172

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
            E ++E K F    +  +   + + ++    +  +E A     +   L      
Sbjct: 173 EEKLNELKLFFRAESKTIFRYLDQRLHYFAEQLLFEQAGQLLYQKKLLQSFYRE 226


>gi|302561257|ref|ZP_07313599.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000]
 gi|302478875|gb|EFL41968.1| excinuclease ABC, C subunit [Streptomyces griseoflavus Tu4000]
          Length = 139

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 1/87 (1%)

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS-PLDEINGIGPLRKRLLLQSFG 576
           +VL      LY +QR+RDEAHRFAIT  R +R K   S PLD++ G+G  RK+ L++ FG
Sbjct: 1   MVLPRTSEGLYLLQRVRDEAHRFAITYQRAKRAKRFRSGPLDDVPGLGETRKQALIKHFG 60

Query: 577 TVKMISRSSPETLASIEGISKKIACKI 603
           +VK +  ++ + +  + GI +K A  I
Sbjct: 61  SVKKLRSATIDQICDVPGIGRKTAETI 87


>gi|260219588|emb|CBA26433.1| hypothetical protein Csp_E35210 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 377

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 5/187 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+ PGVY         LYVGK+  L+ R+ S+  ++    R   ++ +I  I +  T 
Sbjct: 100 DIPDTPGVYLFYGEGSIPLYVGKSVTLRTRVMSHFQASTKVAREMRILQEIRRIEWRETA 159

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI-PALYKHR---DSSTIQGS 120
            E+ ALLLE+ +IK L+P  N LLR +K      + D     P L   R    ++   G 
Sbjct: 160 GELGALLLESRLIKELQPIHNRLLRREKQLTSWKLHDDPAARPLLQLVRLDQVNAADMGQ 219

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +G + S       + +L  T  L   A          C   QI RC G C G      +
Sbjct: 220 LYGAYRSKRQAMDALRTLCETHQLCPNALG-LESGKGACFASQIGRCKGVCAGREVPALH 278

Query: 181 MEFVHEA 187
              +  A
Sbjct: 279 RVRLQMA 285


>gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
 gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
          Length = 604

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 3/217 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P+ PG+Y       R LYVG + ++  R++SY  +     R++ M++    +    
Sbjct: 246 ADGLPKVPGIYIFRAADDRPLYVGTSGDIATRVRSYFTAAEKRARMSEMLAAAERVEAIE 305

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I    P +N   +  +   ++ +TD    P L   R  +     Y 
Sbjct: 306 CAHSLEAEVRELRLIGAHAPPYNRRSKFPERMVWLKLTDG-PYPRLSVVRSLADGDEVYL 364

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           GPF S  A E           LR C      R  T  C L ++ RC  PC   I+  +Y 
Sbjct: 365 GPFGSQRAAELAAAGFHDALPLRQCTHRLSLRTVTPACALAELGRCPAPCEHRITPGEYA 424

Query: 182 EFVHEAKKFLSGGNH-NLKEKIARNMNQATLKEDYES 217
           +      +  +  +   + + +   +      + YE 
Sbjct: 425 DRAVAPFRAATATDPGAVVDALLARIGALAADQRYEE 461


>gi|257897035|ref|ZP_05676688.1| excinuclease ABC [Enterococcus faecium Com12]
 gi|257833600|gb|EEV60021.1| excinuclease ABC [Enterococcus faecium Com12]
          Length = 351

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M +  G V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 35  KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 94

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ I++K            +     
Sbjct: 95  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 147

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L              +    +
Sbjct: 148 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPYLQEMTF 194

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A + +  +  +++      
Sbjct: 195 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 250


>gi|227550562|ref|ZP_03980611.1| excision endonuclease subunit UvrC [Enterococcus faecium TX1330]
 gi|227180270|gb|EEI61242.1| excision endonuclease subunit UvrC [Enterococcus faecium TX1330]
          Length = 326

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M +  G V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 10  KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ I++K            +     
Sbjct: 70  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 122

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L              +    +
Sbjct: 123 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPYLQEMTF 169

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A + +  +  +++      
Sbjct: 170 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 225


>gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 597

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 8/227 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVYQ +     VLY+G + N+ KR++SY  +     RI  M+     +    
Sbjct: 244 ADDLPAGPGVYQFIGPNDEVLYIGTSSNVYKRVRSYFTAAEKRKRIGEMVDLATRVDAIP 303

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSY 121
           T T +EA +LE  +I+ ++P +N   +    + ++ +TD+H  P L     ++  + G+ 
Sbjct: 304 THTVLEAQILEIRLIRDIQPPYNRRSKPRSRY-WVTLTDEH-HPRLSITNVATFGELGNI 361

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCAD--SVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            GPF            +     +R+C         R   C L +   CS PC    +   
Sbjct: 362 LGPFNRKRHALGAGELIAGYSGIRTCTQILPAVPARISGCHLAEFGACSAPCV---TGRV 418

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226
             + + + +  L G   +L E     M      E +ESA   R+RL 
Sbjct: 419 QEDSLTKVRTVLHGDLDDLYEATLEKMQHLASAERFESATDQRERLY 465


>gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1]
          Length = 403

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 6/171 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++++P  PGVY        VLYVG + +L +R++SY  +     R+  M++Q   +   V
Sbjct: 224 AKRVPSEPGVYLFRGAGDEVLYVGTSGDLHRRVRSYFTAGERRRRVRDMVAQAERVDTVV 283

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  +I   +PR+N   R+     ++  T     P L              
Sbjct: 284 CAHALEASVRELRLIAAHRPRYNRRSRNPGRAWWVAPT-AETFPRLSVVASPREGA---L 339

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPC 171
           GPF+S  A    +++      LR C   +        PC L ++ RC+ PC
Sbjct: 340 GPFSSQRAATAVLDAALDAVPLRRCTIRIPARNPSGTPCALHELGRCAAPC 390


>gi|293378728|ref|ZP_06624886.1| GIY-YIG catalytic domain protein [Enterococcus faecium PC4.1]
 gi|292642656|gb|EFF60808.1| GIY-YIG catalytic domain protein [Enterococcus faecium PC4.1]
          Length = 321

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 94/236 (39%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M +  G V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 5   KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ I++K            +     
Sbjct: 65  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L             ++    +
Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 164

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A + +  +  +++      
Sbjct: 165 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220


>gi|257875502|ref|ZP_05655155.1| excinuclease ABC [Enterococcus casseliflavus EC20]
 gi|257809668|gb|EEV38488.1| excinuclease ABC [Enterococcus casseliflavus EC20]
          Length = 321

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 21/234 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
            +  +PE PGVY M D    VLYVGKA +L++R+ SY   N  H +++  ++  + +   
Sbjct: 19  KANALPEKPGVYLMKDQHNEVLYVGKAKSLKQRVVSYFRKNQQHANKVLRLVYNVVDFET 78

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I+   P +N  +    ++ ++ +T+          +        
Sbjct: 79  IETDTELDALLLECRLIQAFHPIYNRQMNHSANYCFVDLTNH----TFTITQTPQIGS-- 132

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +      L  TF L +  +          L  Q+ +       E   E  
Sbjct: 133 -YGPFRQTKKLPALFQLLSETFQLPTVNELTLLT-----LRKQLPQMDAYPLEEKWRE-- 184

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
                    F +G   +    + + +        +E A + + ++         
Sbjct: 185 ------IGCFFAGKKTDCFSLLKKRLAYLIDHLLFEQASVLQRQIHLAQSFYQE 232


>gi|257898976|ref|ZP_05678629.1| excinuclease ABC [Enterococcus faecium Com15]
 gi|257836888|gb|EEV61962.1| excinuclease ABC [Enterococcus faecium Com15]
          Length = 326

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 94/236 (39%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M +  G V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 10  KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 69

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ I++K            +     
Sbjct: 70  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 122

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L             ++    +
Sbjct: 123 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 169

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A + +  +  +++      
Sbjct: 170 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 225


>gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 648

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 9/267 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY     +G VLYVG A +L++R+  Y    +   R+  M++    +    
Sbjct: 243 AEGLPRRPGVYLFRGPSGEVLYVGTAVDLRRRVGQYFTGADPRGRMKEMVNLATAVDHVE 302

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  ++    P +N   R    + ++ +T     P L   R     +    
Sbjct: 303 CAHALEAGVRELRLLAAHAPPYNRRSRFPHRWWWVALT-DEAFPRLAVVRAPRHDRAV-- 359

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKY 180
           GPF S      T   L R   LR+C   + R       C   ++  C       I++ +Y
Sbjct: 360 GPFRSRADAADTAALLARFTGLRTCTARLGRTVLHGPACAEAEVSPCPAA--RNITATQY 417

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSI 238
              V      + G ++         +     +  +E+A   RDR A       +      
Sbjct: 418 AAAVARVAALIDGMDNAALSAAVDQVTALAERRRFENAARLRDRTATAVEILWRGQRLRT 477

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQ 265
              +                     GQ
Sbjct: 478 LATLPELIAAAPDGEGGYHLAVVRHGQ 504


>gi|315281518|ref|ZP_07870130.1| UvrABC system protein C [Listeria marthii FSL S4-120]
 gi|313614847|gb|EFR88379.1| UvrABC system protein C [Listeria marthii FSL S4-120]
          Length = 108

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 1/97 (1%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +PE PG Y   D    +LY+GK+  L+ R+KSY HS     +   ++ QI ++   +T +
Sbjct: 12  LPESPGCYIYRDENNEILYIGKSKCLKNRVKSYFHSK-QIGKTARLVRQIRDLELIITTS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK 102
           E EALLLE  +I++ +P FNI L++  S+PYI IT++
Sbjct: 71  EKEALLLEMILIQKYQPPFNIQLKEGPSYPYIKITNE 107


>gi|293570995|ref|ZP_06682038.1| endo/excinuclease amino domain protein [Enterococcus faecium E980]
 gi|291608921|gb|EFF38200.1| endo/excinuclease amino domain protein [Enterococcus faecium E980]
          Length = 321

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 94/236 (39%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M +  G V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 5   KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ I++K            +     
Sbjct: 65  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L             ++    +
Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 164

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A + +  +  +++      
Sbjct: 165 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 220


>gi|257865875|ref|ZP_05645528.1| excinuclease ABC [Enterococcus casseliflavus EC30]
 gi|257872209|ref|ZP_05651862.1| excinuclease ABC [Enterococcus casseliflavus EC10]
 gi|257799809|gb|EEV28861.1| excinuclease ABC [Enterococcus casseliflavus EC30]
 gi|257806373|gb|EEV35195.1| excinuclease ABC [Enterococcus casseliflavus EC10]
          Length = 321

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 89/234 (38%), Gaps = 21/234 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
            +  +PE PGVY M D    VLYVGKA +L++R+ SY   N  H +++  ++  + +   
Sbjct: 19  KANALPEKPGVYLMKDQHNEVLYVGKAKSLKQRVVSYFRKNQQHANKVLRLVYNVVDFET 78

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I+   P +N  +    ++ ++ +T+          +        
Sbjct: 79  IETDTELDALLLECRLIQAFHPIYNRQMNHSANYCFVDLTNH----TFTITQTPQIGS-- 132

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +      L  TF L +  +          L  Q+ +       +   E  
Sbjct: 133 -YGPFRQTKKLPALFQLLSETFQLPTVNELTLLT-----LRKQLPQMDAYPLEQKWRE-- 184

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
                    F +G   +    + + +        +E A + +  +         
Sbjct: 185 ------IGCFFAGKKTDCFSLLKKRLAYLIDHLLFEQASVLQREIHLAQSFYQE 232


>gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97]
 gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 645

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY     +G VLYVG A +L++R+  Y +  +   R+T M+   ++I    
Sbjct: 243 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 302

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118
               +EA + E  M+    P +N   +    FPY    + +T     P L   R     +
Sbjct: 303 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 357

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176
               GPF S     +T   L R   LR+C   + R       C   ++  C      +++
Sbjct: 358 VV--GPFRSRSKAAETTALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 413

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
           + +Y E V  A   + G ++       + + +   +  YESA   RD 
Sbjct: 414 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 461


>gi|257893613|ref|ZP_05673266.1| excinuclease ABC [Enterococcus faecium 1,231,408]
 gi|257829992|gb|EEV56599.1| excinuclease ABC [Enterococcus faecium 1,231,408]
          Length = 182

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M D  G+V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 5   KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ IT+K            +     
Sbjct: 65  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD 149
            +GPF     +   +  ++ T+ +   ++
Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPWLSE 146


>gi|218753913|ref|ZP_03532709.1| hypothetical protein MtubG1_10964 [Mycobacterium tuberculosis GM
           1503]
          Length = 493

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY     +G VLYVG A +L++R+  Y +  +   R+T M+   ++I    
Sbjct: 235 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 294

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118
               +EA + E  M+    P +N   +    FPY    + +T     P L   R     +
Sbjct: 295 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 349

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176
               GPF S     +T   L R   LR+C   + R       C   ++  C      +++
Sbjct: 350 VV--GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 405

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
           + +Y E V  A   + G ++       + + +   +  YESA   RD 
Sbjct: 406 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 453


>gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551]
 gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
           SUMu001]
 gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
           SUMu002]
 gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
           SUMu005]
 gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
           SUMu007]
 gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
           SUMu008]
 gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
           SUMu011]
 gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
           SUMu012]
 gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
           SUMu006]
 gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
           SUMu009]
 gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
           SUMu011]
 gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
           SUMu012]
          Length = 637

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY     +G VLYVG A +L++R+  Y +  +   R+T M+   ++I    
Sbjct: 235 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 294

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118
               +EA + E  M+    P +N   +    FPY    + +T     P L   R     +
Sbjct: 295 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 349

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176
               GPF S     +T   L R   LR+C   + R       C   ++  C      +++
Sbjct: 350 VV--GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 405

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
           + +Y E V  A   + G ++       + + +   +  YESA   RD 
Sbjct: 406 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 453


>gi|260205487|ref|ZP_05772978.1| hypothetical protein MtubK8_14429 [Mycobacterium tuberculosis K85]
 gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 645

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY     +G VLYVG A +L++R+  Y +  +   R+T M+   ++I    
Sbjct: 243 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 302

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118
               +EA + E  M+    P +N   +    FPY    + +T     P L   R     +
Sbjct: 303 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 357

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176
               GPF S     +T   L R   LR+C   + R       C   ++  C      +++
Sbjct: 358 VV--GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 413

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
           + +Y E V  A   + G ++       + + +   +  YESA   RD 
Sbjct: 414 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 461


>gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 647

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY     +G VLYVG A +L++R+  Y +  +   R+T M+   ++I    
Sbjct: 245 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 304

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118
               +EA + E  M+    P +N   +    FPY    + +T     P L   R     +
Sbjct: 305 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 359

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176
               GPF S     +T   L R   LR+C   + R       C   ++  C      +++
Sbjct: 360 VV--GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 415

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
           + +Y E V  A   + G ++       + + +   +  YESA   RD 
Sbjct: 416 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 463


>gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycobacterium tuberculosis H37Rv]
 gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
 gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11]
 gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403581|ref|ZP_03415762.1| hypothetical protein Mtub0_07840 [Mycobacterium tuberculosis
           02_1987]
 gi|215411916|ref|ZP_03420690.1| hypothetical protein Mtub9_11341 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427566|ref|ZP_03425485.1| hypothetical protein MtubT9_14751 [Mycobacterium tuberculosis T92]
 gi|215431125|ref|ZP_03429044.1| hypothetical protein MtubE_10707 [Mycobacterium tuberculosis
           EAS054]
 gi|215446420|ref|ZP_03433172.1| hypothetical protein MtubT_10948 [Mycobacterium tuberculosis T85]
 gi|219558170|ref|ZP_03537246.1| hypothetical protein MtubT1_13062 [Mycobacterium tuberculosis T17]
 gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN
           1435]
 gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187187|ref|ZP_05764661.1| hypothetical protein MtubCP_14313 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201308|ref|ZP_05768799.1| hypothetical protein MtubT4_14636 [Mycobacterium tuberculosis T46]
 gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554022|ref|ZP_06443232.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           02_1987]
 gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210]
 gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN
           4207]
 gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN
           R506]
 gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1722908|sp|Q10384|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247
 gi|1237044|emb|CAA94260.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
 gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438654|gb|EFD21147.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
           02_1987]
 gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148]
 gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 645

 Score =  153 bits (387), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY     +G VLYVG A +L++R+  Y +  +   R+T M+   ++I    
Sbjct: 243 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 302

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY----ILITDKHKIPALYKHRDSSTIQ 118
               +EA + E  M+    P +N   +    FPY    + +T     P L   R     +
Sbjct: 303 CAHPLEAGVRELRMLSTHAPPYNRRSK----FPYRWWWVALT-DEAFPRLSVIRAPRHDR 357

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176
               GPF S     +T   L R   LR+C   + R       C   ++  C      +++
Sbjct: 358 VV--GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAA--RDVT 413

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
           + +Y E V  A   + G ++       + + +   +  YESA   RD 
Sbjct: 414 AAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDH 461


>gi|289565195|ref|ZP_06445647.1| excinuclease ABC [Enterococcus faecium D344SRF]
 gi|289163016|gb|EFD10864.1| excinuclease ABC [Enterococcus faecium D344SRF]
          Length = 182

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M D  G+V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 5   KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIHHITDFDF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ IT+K            +     
Sbjct: 65  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD 149
            +GPF     +   +  ++ T+ +   ++
Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPWLSE 146


>gi|257885272|ref|ZP_05664925.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,501]
 gi|257821124|gb|EEV48258.1| excinuclease ABC subunit C [Enterococcus faecium 1,231,501]
          Length = 182

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M D  G+V+YVGKA  L+ R+ SY   +  H+ ++  MI  I +  F
Sbjct: 5   KMKTLPMLPGVYLMKDRDGKVIYVGKAKRLKNRVSSYFHQNKQHSKKVLRMIYHITDFDF 64

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+  +P +N  +    ++ Y+ IT+K            +     
Sbjct: 65  VVVDTELDALLLECQLIQHYRPFYNRQMNYFSNYNYVHITNKG----FVLTDTPT---AR 117

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCAD 149
            +GPF     +   +  ++ T+ +   ++
Sbjct: 118 TYGPFRLYKKMPSILRIMEETYQMPWLSE 146


>gi|315029517|gb|EFT41449.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX4000]
          Length = 320

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            + Q+P  P VY M D    ++YVGKA  L+ R+ SY  +SN H+ +   ++ QI +   
Sbjct: 8   KAHQLPLTPSVYLMKDATDTIIYVGKAKKLKNRVSSYFINSNQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    + +    L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNRLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2]
          Length = 581

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 122/287 (42%), Gaps = 9/287 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY  LD   RVLY+GK+ N+ +R++ Y +++ +  R+  MI+    +    
Sbjct: 226 AKGVPAEPGVYMFLDGTRRVLYIGKSGNMARRVRGYFNASENRGRMAEMITAAQEVSCLP 285

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS---TIQG 119
               +EA + E  +I  L P +N   ++ +   +I+++   + P L   R ++       
Sbjct: 286 CAHALEAEVREIRLIGELAPPYNRRSKNPERNSWIVLS-DEEYPRLSVVRANTALEKSPA 344

Query: 120 SYFGPFAS---VDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
           +  GPF S     AV++ +++L       +   +      RPC+  Q+ +C GPC G + 
Sbjct: 345 TPLGPFRSRKTAQAVKELLDTLYPVKRCTAKITASNLASHRPCVSSQVGQCGGPCAGVLD 404

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            + Y++ +    + ++G   +L+    + M++   +  YE+A   RD + +        +
Sbjct: 405 RQAYLDDIAALFEVMAGDFTSLRSLCTQRMSRLADEARYETAAEVRDAMRSALSCAARAE 464

Query: 237 S--IYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281
           S      +     +       I       G+             + +
Sbjct: 465 SVQALRAVPEILAHAPGPEGGIDLAVIRHGKLAAASHVRGSQAIDES 511


>gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
 gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707]
          Length = 577

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 17/229 (7%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +  +P  PGVY     +  VLYVG A +L++R+++Y   +    R+  M++    +    
Sbjct: 223 ASHLPRSPGVYLFRGPSDEVLYVGTASDLRRRVRNYFTGSETRGRMKEMVALATRVDHVE 282

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP----YILITDKHKIPALYKHRDSSTIQ 118
               +EA + E  ++    P +N   +    FP    ++ +T     P L   R  +   
Sbjct: 283 CAHPLEAGVRELRLLSAHVPPYNRRSK----FPMRGWWVTLT-DEAFPRLSVVRTPTADA 337

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176
               GPF S         ++     LR+C   + + +     C    I  C         
Sbjct: 338 ---LGPFRSRTDATDAAATVAEFCGLRTCTTRIGKGQRHGPKCPPRDIGGCPAIA---DD 391

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225
            E Y      A+  + G +     +    + +    E +ESA   RDR+
Sbjct: 392 EEGYRVAPETARALIRGEDDAPLRRARARIEELAAAELFESAARLRDRV 440


>gi|315149843|gb|EFT93859.1| GIY-YIG catalytic domain protein [Enterococcus faecalis TX0012]
          Length = 320

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
            S Q+   PGVY M D    ++YVGKA  L+ R+ SY  +S+ H+ +   ++ QI +   
Sbjct: 8   KSHQLSLTPGVYLMKDATDTIIYVGKAKKLKNRVSSYFINSHQHSRKTMRLVKQIIDFDV 67

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I++ +PR+N  +   + + Y+ +    +   L     +   + +
Sbjct: 68  LHTDTELDALLLECQLIQQYRPRYNRQMNAYEQYSYVSVAVNER--QLEIKLLNIPTKEN 125

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            FGP++    +      L   + L                    ++ S   T     E +
Sbjct: 126 CFGPYSIRRKLNHLKIILDSIYDLVPTNYWH----------QTFQKESAIPTELFQQELF 175

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                    F         ++IA+ M +A  K+ +E A   ++    L+   N N 
Sbjct: 176 --------DFFHNQGREPIKRIAQQMQEAAEKQAFEKAAKLKEDWLFLTRFANQNQ 223


>gi|289569437|ref|ZP_06449664.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis T17]
 gi|289543191|gb|EFD46839.1| excinuclease ABC subunit C uvrC [Mycobacterium tuberculosis T17]
          Length = 116

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
            +P  PGVY+  D  GRV+YVGKA +L+ R+ SY     +   R   +++    + +TV 
Sbjct: 13  SIPVEPGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVV 72

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDD 91
            TEVEAL LE   IK   PRFN+  RDD
Sbjct: 73  GTEVEALQLEYTWIKEFDPRFNVRYRDD 100


>gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Mycobacterium avium 104]
 gi|118167809|gb|ABK68706.1| DNA polymerase III, epsilon subunit [Mycobacterium avium 104]
          Length = 643

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 97/265 (36%), Gaps = 5/265 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY     +G VLY+G A +L++R+  Y    +   R+  M++    +    
Sbjct: 243 AEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRRVAQYFTGADPRGRMKEMVALAGAVDHVE 302

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  ++    P +N   R  + + ++ +T     P L   R     +    
Sbjct: 303 CAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALT-DEAFPRLAVVRAPRHDRAV-- 359

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +      T   L R   LR+C + + R      L  + +    P    +++ +Y  
Sbjct: 360 GPFRARADAADTAELLARFAGLRTCTNRLGRAALHGPLCPEAEVAPCPAARGVTATQYAA 419

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSIYN 240
            V      + G +++        +     +  +ESA   RDR A       +     +  
Sbjct: 420 AVARVAALIDGADNSALAAAVDQVAALAERRHFESAARLRDRTATAVEVLWRGQRLRVLA 479

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQ 265
            +              Q     +G+
Sbjct: 480 SLPELVAAAPDGQGGYQLAVVRYGR 504


>gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_09919 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 648

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 97/265 (36%), Gaps = 5/265 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY     +G VLY+G A +L++R+  Y    +   R+  M++    +    
Sbjct: 248 AEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRRVAQYFTGADPRGRMKEMVALAGAVDHVE 307

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  ++    P +N   R  + + ++ +T     P L   R     +    
Sbjct: 308 CAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALT-DEAFPRLAVVRAPRHDRAV-- 364

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +      T   L R   LR+C + + R      L  + +    P    +++ +Y  
Sbjct: 365 GPFRARADAADTAELLARFAGLRTCTNRLGRAALHGPLCPEAEVAPCPAARGVTATQYAA 424

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSIYN 240
            V      + G +++        +     +  +ESA   RDR A       +     +  
Sbjct: 425 AVARVAALIDGADNSALAAAVDQVAALAERRHFESAARLRDRTATAVEVLWRGQRLRVLA 484

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQ 265
            +              Q     +G+
Sbjct: 485 SLPELVAAAPDGQGGYQLAVVRYGR 509


>gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
 gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S]
          Length = 577

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 17/229 (7%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +  +P  PGVY     +  VLYVG A +L++R+++Y   +    R+  M++    +    
Sbjct: 223 ASHLPRSPGVYLFRGPSDEVLYVGTASDLRRRVRNYFTGSETRGRMKEMVALATRVDHVE 282

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP----YILITDKHKIPALYKHRDSSTIQ 118
               +EA + E  ++    P +N   +    FP    ++ +T     P L   R  +   
Sbjct: 283 CAHPLEAGVRELRLLSAHVPPYNRRSK----FPMRGWWVTLT-DEVFPRLSVVRTPTADA 337

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEIS 176
               GPF S         ++     LR+C   + + +     C    I  C         
Sbjct: 338 ---LGPFRSRTDATDAAAAVAEFCGLRTCTTRIGKGQRHGPKCPPRDIGGCPAIA---DD 391

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225
            E Y      A+  + G +     +    + +    E +ESA   RDR+
Sbjct: 392 EEGYRVAPETARALIRGEDDAPLRRARARIEELAAAELFESAARLRDRV 440


>gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 457

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 100/266 (37%), Gaps = 11/266 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E++P   GVY   D    ++YVGK+ N++KR+  +    N   +   M  ++ ++ + +
Sbjct: 190 LEELPSETGVYYFHDENSEIIYVGKSRNIRKRVNQHFT--NDNPKSREMQKKVASVSYEL 247

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSY 121
           T  E+ ALL E   IK LKPR+N  L+ D  S      TD      L   R + T +   
Sbjct: 248 TGNELIALLKENQEIKELKPRYNRALKRDIFSHALYQFTDDDGYINLKIGRANKTKKN-- 305

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
              F+S+ + + ++      F L           T  C  + IK C G C GE     Y 
Sbjct: 306 ITTFSSLRSAKNSLEKWVTEFELCERLAG-LHGGTGNCFAYTIKSCHGACIGEEPPISYN 364

Query: 182 EFVHEAKKFLSGGNHNL-----KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
           E V++     S  N N+       ++           D++            +     + 
Sbjct: 365 ERVNKLIDRHSYNNQNMLLIGRGREVDEKSALLIEDGDFKGTGYFNLNHQINNLDIIRSI 424

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFFH 262
                 +  + +  ++    +  F  
Sbjct: 425 ITPMDNNRDAQHIIQSFLRKKHHFKI 450


>gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 643

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 5/265 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVY     +G VLY+G A +L++R+  Y    +   R+  M++    +    
Sbjct: 243 AEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRRVAQYFTGADPRGRMKEMVALAGAVDHVE 302

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  ++    P +N   R  + + ++ +T     P L   R     +    
Sbjct: 303 CAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALT-DEAYPRLAVVRAPRHDRAV-- 359

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           GPF +      T   L R   LR+C + + R      L  + +    P    +++ +Y  
Sbjct: 360 GPFRARADAADTAELLARFAGLRTCTNRLGRAALHGPLCPEAEVAPCPAARGVTATQYAA 419

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH--IQNHNDSIYN 240
            V      + G +++        +     +  +ESA   RDR A       +        
Sbjct: 420 AVARVAALIDGADNSALAAAVDQVAALAERRHFESAARLRDRTATAVETLWRGQRLRALA 479

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQ 265
            +              Q     +G+
Sbjct: 480 SLPELVAAAPDGQGGYQLAVVRYGR 504


>gi|257888587|ref|ZP_05668240.1| excinuclease ABC [Enterococcus faecium 1,141,733]
 gi|257824641|gb|EEV51573.1| excinuclease ABC [Enterococcus faecium 1,141,733]
          Length = 351

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 93/236 (39%), Gaps = 21/236 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM-HSNNHTHRITHMISQINNIRF 60
             + +P  PGVY M +  G V+YVGKA  L+ RI SY   +  H+ ++  MI  I +  F
Sbjct: 35  KIKNLPMLPGVYLMKNQEGMVIYVGKAKRLKNRISSYFHQNKQHSKKVLRMIHHITDFDF 94

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
            V  TE++ALLLE  +I+   P +N  +    ++ Y+ I++K            +     
Sbjct: 95  VVVDTELDALLLECQLIQHYHPFYNRQMNYFSNYNYVHISNKG----FVLTDTPT---AR 147

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +   +  ++ T+ +               L             ++    +
Sbjct: 148 TYGPFRLYKKMPSILRIMEETYQMPW-------------LSEISLLALRVQLPDLQEMTF 194

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            +   E +    G N  L   + +       + ++E A + +  +  +++      
Sbjct: 195 EQKKKEIQGLFQGRNKKLLTYLKKRQQHFIYQLNFEKAGMLQKDIELVTYFIRRIQ 250


>gi|160879816|ref|YP_001558784.1| excinuclease ABC subunit C [Clostridium phytofermentans ISDg]
 gi|160428482|gb|ABX42045.1| Excinuclease ABC C subunit domain protein [Clostridium
           phytofermentans ISDg]
          Length = 323

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 3/150 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +Q+P+ PG+Y+MLD  G ++Y+GK+  LQKR++SY        ++T M+  + +I + 
Sbjct: 10  KLKQIPKLPGIYKMLDSRGVIIYIGKSKCLQKRVQSYFVKTPKWDKVTRMVPMVKDIEYV 69

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
           VT T +EA LLE ++IK  KPRFN  +++D ++ +I + D +K  +L    + +      
Sbjct: 70  VTDTHLEARLLECSLIKEYKPRFNAQMKNDLNYFFIKVEDYNKYNSLSVMEERTD---HC 126

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSV 151
           +GPF S   + + +  L+  + +    D  
Sbjct: 127 YGPFRSKFTISEFLVKLKNIYPITRNGDQY 156


>gi|325569884|ref|ZP_08145878.1| excision endonuclease subunit UvrC [Enterococcus casseliflavus ATCC
           12755]
 gi|325157007|gb|EGC69175.1| excision endonuclease subunit UvrC [Enterococcus casseliflavus ATCC
           12755]
          Length = 310

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 89/234 (38%), Gaps = 21/234 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRF 60
            +  +PE PGVY M D    VLYVGKA +L++R+ SY   N  H +++  ++  + +   
Sbjct: 11  KANALPERPGVYLMKDQHNEVLYVGKAKSLKQRVVSYFRKNQQHANKVLRLVYNVVDFET 70

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
             T TE++ALLLE  +I+   P +N  +    ++ ++ +T+     +    +        
Sbjct: 71  IETDTELDALLLECRLIQAFHPIYNRQMNHSANYCFVDLTNH----SFTITQTPQIGS-- 124

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +GPF     +      L  TF L +  +                        ++ +   
Sbjct: 125 -YGPFRQTKKLPVLFQLLSETFQLPTVNELTLLT-------------LRKQLPQMEAYSL 170

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNH 234
            E   E   F +G   +    + + +        +E A + +  +         
Sbjct: 171 EEKWREIGCFFAGKKTDCFSLLKKRLAYLIDHLLFEQASVLQREIHLAESFYQE 224


>gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 469

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 5/182 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +PE PGVY         LY+GK+  L+ R+ S+  +++   R   +  ++  + +  T
Sbjct: 195 DDIPEAPGVYLFYGEGEVPLYIGKSVRLRSRVLSHFQADHRDARELRLAQEVRRVEWRET 254

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKH-KIPALYKHRDSSTIQG--- 119
             E  ALLLE  +IK L+P  N  LR ++      + +     P L   R          
Sbjct: 255 AGEFGALLLEMRLIKELQPLLNRQLRRERQLCAWRLAEDPVARPLLTLMRGDELDPRFFP 314

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
             +G + S     + + +L +   L   A  +   + R C   QI +C G C G  S+E+
Sbjct: 315 QLYGCYRSKRQAVEALRALVQRHALCPQAVGLESGKGR-CFAQQIGQCKGVCCGLESAER 373

Query: 180 YM 181
           + 
Sbjct: 374 HH 375


>gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_02987 [Mycobacterium kansasii ATCC
           12478]
          Length = 680

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PG+Y     +G VLYVG A +L++R+  Y +  +   RI  M++    +    
Sbjct: 257 ADGLPHRPGIYVFRGPSGEVLYVGTAVDLRRRVSQYFNGADPRGRIKEMVNLATGVDHVE 316

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  M+    P +N   R    + +++++ +   P L   R      G   
Sbjct: 317 CAHPLEAGVRELRMLAAHAPPYNRRSRFPHRWWWVVLS-EEAFPRLAVVRAPRH--GRVI 373

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PCLLFQIKRCSGPCTGEISSEKY 180
           GP+ S     +T   L R   +R+C   + R       C   ++  C       +++++Y
Sbjct: 374 GPYRSRADAAETATLLARFTGIRTCTKRLARSAVHGPACPELEVSPCPAA--RNLTAQRY 431

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225
            E V  A   + G ++         +     +  YESA   RD +
Sbjct: 432 AEAVQRATDLIDGRDNTALAAAIHQVTVLAERHRYESAARLRDHI 476


>gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M]
 gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 674

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PG+Y     +G VLYVG A +L++R+  Y +  +   R+  M++    +    
Sbjct: 257 ADGLPHRPGIYLFRGPSGEVLYVGTAVDLRRRVSQYFNGADSRGRMKEMVALAGAVDHVE 316

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  M+    P +N   R    + ++ +T     P L   R     +    
Sbjct: 317 CAHALEAGVRELRMLAAHAPPYNRRSRFPHRWWWVTLT-DEAFPRLSVVRAPRHDRVV-- 373

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH--RTRPCLLFQIKRCSGPCTGEISSEKY 180
           GPF S     +T   L R   +R+C   + R       C   ++  C    T  +++E Y
Sbjct: 374 GPFRSRTDATETAALLARFTGVRTCTKRLARSALHGPACPELEVSACPA--TRNVTAEGY 431

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRL 225
            +    A   + G ++         ++    +  YESA   RD +
Sbjct: 432 ADAAKRAADLIEGVDNTALTAAVHQVSDLAERHRYESAARLRDHI 476


>gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS]
 gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
          Length = 630

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 7/224 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY        VLY+G A +L++R+  Y    +   R+  M S    +    
Sbjct: 227 ADGLPHRPGVYLFRGPGDEVLYIGTAVDLRRRVGQYFTGADPRARMKEMASLATRVDHVE 286

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
              E+EA + E  ++    P +N   +  + + ++++T     P     R          
Sbjct: 287 CAHELEAGVRELRLLAAHAPPYNRRSKFPQRWWWVVLT-DEPFPRFSVVRAPRHGSAV-- 343

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKY 180
           GPF +     +T   L R   +R+C   + R       C   ++  C  P   +I +  Y
Sbjct: 344 GPFRARTDAVQTAELLARFTGVRTCTARLARAARHGAACAERELSPCPAP--RDIDAAAY 401

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
                 A   + G +      +   +        YESA   RD 
Sbjct: 402 APAHRRAADLIEGRDDAALAAVVDGIAALAAVNRYESAARLRDH 445


>gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS]
 gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS]
 gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 630

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 7/224 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY        VLY+G A +L++R+  Y    +   R+  M S    +    
Sbjct: 227 ADGLPHRPGVYLFRGPGDEVLYIGTAVDLRRRVGQYFTGADPRARMKEMASLATRVDHVE 286

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
              E+EA + E  ++    P +N   +  + + ++++T     P     R          
Sbjct: 287 CAHELEAGVRELRLLAAHAPPYNRRSKFPQRWWWVVLT-DEPFPRFSVVRAPRHGSAV-- 343

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISSEKY 180
           GPF +     +T   L R   +R+C   + R       C   ++  C  P   +I +  Y
Sbjct: 344 GPFRARTDAVQTAELLARFTGVRTCTARLARAARHGAACAERELSPCPAP--RDIDAAAY 401

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
                 A   + G +      +   +        YESA   RD 
Sbjct: 402 APAHRRAADLIEGRDDAALAAVVDGIAALAAVNRYESAARLRDH 445


>gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 453

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 5/195 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E +PE PGVY         +Y+GKA ++++R+ S+   ++ + +   +  Q+  I +  
Sbjct: 193 LEDLPESPGVYLFYGDNDLPIYIGKAKDIRQRVLSHFSGDHSSAKEMALSQQLRRIDWIE 252

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLR-DDKSFPYILITDKHKI--PALYKHRDSSTI-Q 118
           T  E+ ALL E+ ++K L P  N  LR +D    + L+ +      P L    D      
Sbjct: 253 TAGEIGALLKESRLVKTLMPTANRQLRKNDDVCTWTLVDEGEGWLRPQLALAADLDFDIH 312

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISS 177
            + +G F S       + +L  +  L      + + +  +PC  +QIKRC G C G+   
Sbjct: 313 TACYGLFKSTREANDVLRALVESHHLCDVLTGLDKAKPGKPCFGYQIKRCKGACIGKEPL 372

Query: 178 EKYMEFVHEAKKFLS 192
            K+   +  A   + 
Sbjct: 373 AKHTMRLMTALTSMK 387


>gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and
           Excinuclease ABC, C subunit [Thiomonas sp. 3As]
          Length = 469

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 5/182 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +PE  GVY         LY+GK+  L+ R+ S+  +++   R   +  ++  + +  T
Sbjct: 195 DDIPEASGVYLFYGEGEVPLYIGKSVRLRARVLSHFQADHRDARELRLAQEVRRVEWRET 254

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKH-KIPALYKHRDSSTIQG--- 119
             E  ALLLE  +IK L+P  N  LR ++      +       P L   R          
Sbjct: 255 AGEFGALLLEMRLIKELQPLLNRQLRRERQLCAWRLAKDPVARPLLTLVRGDELDPRFFP 314

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
             +G + S     + + +L +   L   A  +   + R C   QI +C G C G  S+E+
Sbjct: 315 QLYGCYRSKRQAVEALRALAQRHALCPQALGLESGKGR-CFAQQIGQCKGVCCGLESAER 373

Query: 180 YM 181
           + 
Sbjct: 374 HH 375


>gi|82703123|ref|YP_412689.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82411188|gb|ABB75297.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 463

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 5/183 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +Q+P+ PGVY      G  LY+GK+  L+ R+ S+   ++ +     +  ++  + +  
Sbjct: 195 LDQIPDRPGVYFFYGKNGLPLYIGKSVTLRSRVMSHFSGDHASFSDMRIAQEVERVEWME 254

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILI-TDKHKIPALYKHRD---SSTIQ 118
           T  E+ ALLLE+ +IK   P  N  LR  ++   + +  D ++ P +    +      + 
Sbjct: 255 TAGELGALLLESRLIKEHHPIHNKRLRRSRTLFSLKLGDDSYEAPLVNIVTEEDIHPEVF 314

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G  +G F S       +  + R   L         +    C   Q+KRC+G C G+   +
Sbjct: 315 GDLYGLFRSKTKAVDALREVVRENRLCPRVVG-LENGKGACFAHQLKRCNGVCAGKEVPQ 373

Query: 179 KYM 181
            + 
Sbjct: 374 LHY 376


>gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family
           [Sanguibacter keddieii DSM 10542]
 gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Sanguibacter keddieii DSM 10542]
          Length = 616

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 11/236 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ MP  PGVY  +     VLYVG + +++ R++SY  +     R+T MI     +R   
Sbjct: 256 ADGMPSGPGVYMFVGPQDEVLYVGTSTDVRTRVRSYFTAAEKRGRMTEMIRLAVTVRAVP 315

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR-DSSTIQGSY 121
             T +EA + E  +I    PR+N   +  +   ++ ++     P L   R  ++ +    
Sbjct: 316 CATALEARVRELRLITEHAPRYNRRSKHPERMHWVRVS-SEAYPRLTVVRDGTAALGEPV 374

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT---RPCLLFQIKRCSGPCTGEI--- 175
            GPF S     + + +LQ    +R C   +    +     C+L ++ RCS PC       
Sbjct: 375 VGPFVSRARATEAVEALQSAHQVRQCTKKLPALPSATASACVLAEMGRCSAPCVRPSSRP 434

Query: 176 ---SSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAAL 228
                + Y + V    + +      +   +AR + +   ++ +E A   RDRL A 
Sbjct: 435 TTAPDDDYADVVAGLVRSMEHDPSPVVAALARRIAEHVEQQRFEDAGTDRDRLEAF 490


>gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK]
 gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
          Length = 617

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY     +  VLYVG A +L++R+  Y +  +   R+  M S    +      
Sbjct: 221 SLPRSPGVYLFRGPSAEVLYVGTAVDLRRRVGQYFNGADPRTRMKEMASLATAVDHVECA 280

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            ++EA + E  ++    P +N   +    + ++ +T     P     R   T      GP
Sbjct: 281 HDLEAGVRELRLLAAHAPPYNRRSKFPHRWWWVTLT-DEPFPRFSTVRTPRTDSAV--GP 337

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKYME 182
           F S          + R   +R+C + + R       C   ++  C      +  ++ Y  
Sbjct: 338 FRSRAEAFDAAALMARFTGVRTCTNRLGRKAFHGPTCPEREVSPCPA--VRDADAQTYAA 395

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
            V +A+  + G +         ++     +  YE+A   RD 
Sbjct: 396 AVADARALIDGRDGRPLAAALSHIADLAERNRYETAARLRDH 437


>gi|325497101|gb|EGC94960.1| nucleotide excision repair endonuclease [Escherichia fergusonii
           ECD227]
          Length = 295

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  ELPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + ++     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLKLDNQ----RVEVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E 
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESQET 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L       +  I      A  ++  E    H           N  D   
Sbjct: 202 HELRLQQSLERLRVVCWPWQGAI------ALKEQHPEMTQFHIIHNWLWLGAVNSLDEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLVRTPAGFDHDGY 269


>gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family
           [Mycobacterium sp. Spyr1]
 gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Mycobacterium sp. Spyr1]
          Length = 617

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY     +  VLYVG A +L++R+  Y +  +   R+  M S    +      
Sbjct: 221 SLPRSPGVYLFRGPSAEVLYVGTAVDLRRRVGQYFNGADPRTRMKEMASLATAVDHVECA 280

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
            ++EA + E  ++    P +N   +    + ++ +T     P     R   T      GP
Sbjct: 281 HDLEAGVRELRLLAAHAPPYNRRSKFPHRWWWVTLT-DEPFPRFSTVRTPRTDSAV--GP 337

Query: 125 FASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP--CLLFQIKRCSGPCTGEISSEKYME 182
           F S          + R   +R+C + + R       C   ++  C      +  ++ Y  
Sbjct: 338 FRSRADAFDAAALMARFTGVRTCTNRLGRKAFHGPTCPEREVSPCPA--VRDADAQTYAA 395

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
            V +A+  + G +         ++     +  YE+A   RD 
Sbjct: 396 AVADARALIDGRDGRPLAAALSHIADLAERNRYETAARLRDH 437


>gi|296102788|ref|YP_003612934.1| nucleotide excision repair endonuclease [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057247|gb|ADF61985.1| nucleotide excision repair endonuclease [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 292

 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 9/182 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E++P+ PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I + 
Sbjct: 28  LEELPKQPGVYIFHGESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWY 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-S 120
            T  E+ ALLLEA +IK  +P FN  LR ++    + IT     P +   RD       +
Sbjct: 84  PTAGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQITAGK--PQVVYARDVDFSHAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            +G FA+  A  + + +L     L      +    R R C    +KRC+G C G+ S E 
Sbjct: 142 LYGLFANKRAALQALQTLADEQQLCYSLLGLEATTRGRACFRSALKRCAGACCGKESVED 201

Query: 180 YM 181
           + 
Sbjct: 202 HH 203


>gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977]
 gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium
           abscessus]
          Length = 600

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 96/270 (35%), Gaps = 10/270 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ MP  PGVY     +G VLYVG A NL++R++ Y    +   R+  M++    +   +
Sbjct: 222 ADAMPYAPGVYLFRGPSGEVLYVGTAVNLRRRVQQYFTGADPRGRMREMVTIATAVDHVI 281

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA + E  ++    P +N   R    + ++++T +   P     R ++       
Sbjct: 282 CAHPLEAAVRELRLLGAHAPPYNRKSRFPHRWWWVVLT-EEPFPRFSVVRTTN--GRPTL 338

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR--PC---LLFQIKRCSGPCTGEISS 177
           GPF +          L R   +R+C + +         C             P    + +
Sbjct: 339 GPFRARGDATTAALVLARFTGVRTCTNRIGAGGRHGSACDGQSYPHDTASPCPAAAGVDA 398

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND- 236
             Y + +      L G +    + +   + +   +  YE+A   RD   AL  +      
Sbjct: 399 TVYRDGLAPMLAVLDGTHGQPLQAMCDRVAELGAQRRYETAARQRDATTALIEVLARQHR 458

Query: 237 -SIYNRMDCFSLYHNKNLACIQTCFFHFGQ 265
                R++             Q      GQ
Sbjct: 459 LHALARIEELIAARPDGEGGWQIAVVRHGQ 488


>gi|190147125|gb|ACE62928.1| UvrC [Serratia marcescens]
          Length = 98

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 52/86 (60%)

Query: 5  QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +   PGVY+M D  G V+YVGKA +L+KR+ SY      + +   ++  I  I  TVT 
Sbjct: 13 TVTSQPGVYRMYDATGTVIYVGKAKDLKKRLASYFRQQVSSRKTETLVKNIAQIDVTVTH 72

Query: 65 TEVEALLLEANMIKRLKPRFNILLRD 90
          TE EALLLE N  K   PR+N+LLRD
Sbjct: 73 TETEALLLEHNYFKLYNPRYNVLLRD 98


>gi|257094710|ref|YP_003168351.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047234|gb|ACV36422.1| Exonuclease RNase T and DNA polymerase III [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 469

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 10/198 (5%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +PE PGVY        +LYVGK+ NL++R++++  S+   ++   +  ++  +R+  
Sbjct: 194 LDDLPESPGVYLFYGDNDALLYVGKSVNLRQRVRAHFASDLREYKEMRLSQEVRRLRWQE 253

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDK---SFPYILITDKHKIPALYKHRDSSTI-- 117
           T  E+ ALLLE+ +IK  +P  N  LR      ++  + +        L      +    
Sbjct: 254 TVGELGALLLESRLIKECQPIHNHRLRRSSDLCTWQLVQVAPGDC--RLRLVSGQTADFV 311

Query: 118 -QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGE 174
                FG FA+      ++  +     L      + +     RPC   Q+K C G C G+
Sbjct: 312 RSNDLFGLFANRREATDSLRKVAAANGLCPIILGLEKPAGPGRPCFSHQVKHCRGACVGK 371

Query: 175 ISSEKYMEFVHEAKKFLS 192
            +   + + +  A   L 
Sbjct: 372 EAIGVHSDRMLSALMKLK 389


>gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 470

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 6/175 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E +PE PGVY        +LYVGK+ NL++R+ S+  ++   ++   +  Q+  + +  
Sbjct: 199 LEDLPESPGVYLFYGENDVLLYVGKSVNLRQRVFSHFAADTREYKAMQLTQQVRRVEWRE 258

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD--KHKIPALYKHRDSSTIQ-- 118
           T  E+ ALLLE+ +IK   P  N  LR         + +        +    D       
Sbjct: 259 TVGELGALLLESRLIKEGAPAHNRRLRRASELCAWRLDEVAPGDFRPVLVTADDPDFGRD 318

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPC 171
           G  FGPF+S       +  +     L      + +      PC  FQ+++C G C
Sbjct: 319 GDLFGPFSSRRQATLALRKIADAHQLCPVVLGLEKPARPDSPCFAFQVQKCRGAC 373


>gi|238894282|ref|YP_002919016.1| nucleotide excision repair endonuclease [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546598|dbj|BAH62949.1| endonuclease in nucleotide excision repair [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 287

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 11/182 (6%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVYQ    +    LY+GK+ NL+ R+ S++     T     M+ Q   I + 
Sbjct: 28  LEALPKLPGVYQFYGDSDTMPLYIGKSVNLRSRVLSHLR----TPEEAAMLRQSRRITWQ 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFP-YILITDKHKIPALYKHRDSS-TIQG 119
            T  E+ ALLLEA +IK  +P FN  LR +K    ++        P +   R+   + Q 
Sbjct: 84  RTAGELGALLLEARLIKEQQPLFNKRLRRNKQLCAWL---LADDRPQIVYAREVDFSHQQ 140

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             +G FA+  A  + + SL     L           R R C    + RC+G C G+ S E
Sbjct: 141 HLYGLFANRRAALQMLQSLADEQRLCYGLLGLEPLSRGRACFRSALGRCAGACCGKESVE 200

Query: 179 KY 180
            +
Sbjct: 201 AH 202


>gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
 gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
          Length = 457

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 18/265 (6%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E++P   GVY M D  G ++YVGK+ N++KR+  +  S   + +   M +++  +    T
Sbjct: 191 EELPSSTGVYYMHDDDGEIIYVGKSKNIRKRLNQHFTS--ESVKSREMQNEVYAVTHEAT 248

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDD-------KSFPYILITDKHKIPALYKHRDSST 116
             E+ ALL E   IK+LKP++N  L+         +++      D +    LY  ++ + 
Sbjct: 249 GNELVALLKENQEIKKLKPKYNRALKRSVFNYGLYQTY------DDNGYLKLYYSKNQTK 302

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
              +    F + +     ++ +   F L     +   +    C  + IK+C G C  E S
Sbjct: 303 K--TPITTFTNKNQARSFMDRIIEEFGLC-LNLTSISNSDSACFNYSIKKCFGACVSEES 359

Query: 177 SEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
            E Y + +       S  N N+                 E+ +        L+H  +H D
Sbjct: 360 VEVYNKRIQAIIDKYSFSNQNMIVVDRGRETSEKSALLIENGVFMGVGYFDLNHQISHPD 419

Query: 237 SIYNRMDCFSLYHNKNLACIQTCFF 261
            I + +       +           
Sbjct: 420 IIRSIITPMENDRDAQHIIQSYMRR 444


>gi|295096129|emb|CBK85219.1| Excinuclease Cho [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 301

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 9/186 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I + 
Sbjct: 37  LEALPKQPGVYFFHGDSDTMPLYIGKSVNIRSRVMSHLRTPDE----ASMLRQSRRITWI 92

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
            T  E+ ALLLEA +IK  +P FN  LR ++    + I      P +   R+   + + +
Sbjct: 93  ETAGELGALLLEARLIKEQQPLFNKRLRRNRQLCSLQINAGK--PQIVYAREVDFSHEPN 150

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            +G FA+  A  +T+ SL     L      +    R R C    +KRC+G C G+ S E+
Sbjct: 151 LYGLFANKRAALQTLQSLADELQLCYGLLGLEATTRGRACFRSALKRCAGACCGKESVEE 210

Query: 180 YMEFVH 185
           +     
Sbjct: 211 HHARFM 216


>gi|89901349|ref|YP_523820.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89346086|gb|ABD70289.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 476

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 5/181 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE  GVY         LY+GK+  L+ R+ ++  + +   R   M  +I  I +  T 
Sbjct: 196 DIPESVGVYIFYGEGPLPLYIGKSIKLRSRVLAHFQAASRAPREMRMAQEIRRIEWLETA 255

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKH-KIPALYKHRD---SSTIQGS 120
            E+ ALLLEA ++K  +P +N  LR + +     + D     P L   R         G 
Sbjct: 256 GEIGALLLEARLVKERQPAYNRRLRRESTLCAWRLADDPLARPLLSLVRGEALQPQEFGQ 315

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            +G + S +    ++  L  +  L   A  +   + R C   QI RC G C GE S E++
Sbjct: 316 MYGVYRSKNQALSSLRELADSQGLCLQALGLESGKGR-CFAHQIGRCQGVCCGEESPERH 374

Query: 181 M 181
            
Sbjct: 375 H 375


>gi|152969781|ref|YP_001334890.1| nucleotide excision repair endonuclease [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|330012506|ref|ZP_08307404.1| endonuclease cho [Klebsiella sp. MS 92-3]
 gi|150954630|gb|ABR76660.1| endonuclease in nucleotide excision repair [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|328533799|gb|EGF60482.1| endonuclease cho [Klebsiella sp. MS 92-3]
          Length = 287

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 11/182 (6%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVYQ    +    LY+GK+ NL+ R+ S++     T     M+ Q   I + 
Sbjct: 28  LEALPKLPGVYQFHGDSDTMPLYIGKSVNLRSRVLSHLR----TPEEAAMLRQSRRITWQ 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFP-YILITDKHKIPALYKHRDSS-TIQG 119
            T  E+ ALLLEA +IK  +P FN  LR +K    ++        P +   R+   + Q 
Sbjct: 84  RTAGELGALLLEARLIKEQQPLFNKRLRRNKQLCAWL---LADDRPQIVYAREVDFSHQQ 140

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             +G FA+  A  + + SL     L           R R C    + RC+G C G+ S E
Sbjct: 141 HLYGLFANRRAALQMLQSLADEQRLCYGLLGLEPLSRGRACFRSALGRCAGACCGKESVE 200

Query: 179 KY 180
            +
Sbjct: 201 AH 202


>gi|218548690|ref|YP_002382481.1| nucleotide excision repair endonuclease [Escherichia fergusonii
           ATCC 35469]
 gi|218356231|emb|CAQ88848.1| endonuclease of nucleotide excision repair [Escherichia fergusonii
           ATCC 35469]
          Length = 295

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  ELPTRPGVYLFHGKSDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + ++                     
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLKLDNQ----RTEVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  +  + + ++     L           R R C    +KRC+G C G+ S E 
Sbjct: 142 LFGLFANRRSALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESQET 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L       +  I      A  ++  E    H           N  D   
Sbjct: 202 HELRLQQSLERLRVVCWPWQGAI------ALKEQHPEMTQFHIIHNWLWLGAVNSLDEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLVRTPAGFDHDGY 269


>gi|288549537|ref|ZP_06390716.1| excinuclease cho [Enterobacter cancerogenus ATCC 35316]
 gi|288318306|gb|EFC57244.1| excinuclease cho [Enterobacter cancerogenus ATCC 35316]
          Length = 301

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 9/182 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I + 
Sbjct: 37  LEALPKQPGVYFFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRITWI 92

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
            T  E+ ALLLEA +IK  +P FN  LR ++    I +      P +   R+   + + +
Sbjct: 93  QTAGELGALLLEARLIKEQQPLFNKRLRRNRQLCSIQVQAGK--PQVVYAREVDFSQEPN 150

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            +G FA+  A  +T+ +L     L      +    R R C    +KRC+G C G+ S E 
Sbjct: 151 LYGLFANKRAALQTVQTLADELQLCYGLLGLEATTRGRACFRSALKRCAGACCGKESVEA 210

Query: 180 YM 181
           + 
Sbjct: 211 HH 212


>gi|262043052|ref|ZP_06016194.1| excinuclease cho [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259039604|gb|EEW40733.1| excinuclease cho [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 270

 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 11/182 (6%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVYQ    +    LY+GK+ NL+ R+ S++     T     M+ Q   I + 
Sbjct: 28  LEALPKLPGVYQFHGDSDTMPLYIGKSVNLRSRVLSHLR----TPEEAAMLRQSRRITWQ 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFP-YILITDKHKIPALYKHRDSS-TIQG 119
            T  E+ ALLLEA +IK  +P FN  LR +K    ++        P +   R+   + Q 
Sbjct: 84  RTAGELGALLLEARLIKEQQPLFNKRLRRNKQLCAWL---LADDRPQIVYAREVDFSHQQ 140

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSE 178
             +G FA+  A  + + SL     L           R R C    + RC+G C G+ S E
Sbjct: 141 HLYGLFANRRAALQMLQSLADEQRLCYGLLGLEPLSRGRACFRSALGRCAGACCGKESVE 200

Query: 179 KY 180
            +
Sbjct: 201 AH 202


>gi|226227841|ref|YP_002761947.1| putative exonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091032|dbj|BAH39477.1| putative exonuclease [Gemmatimonas aurantiaca T-27]
          Length = 366

 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 26/245 (10%)

Query: 13  YQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLL 72
           Y M    G VLYVGK+  ++ R+ SY       HR   M+ +  +I +    +E  ALL 
Sbjct: 2   YLMRGGRGDVLYVGKSTQVRTRLLSYFRLPWPEHRHARMLRETAHIEWEPHPSEFAALLR 61

Query: 73  EANMIKRLKPRFNILLRD--DKSFPYILITDKHKI-PALYKHR----DSSTIQGSYFGPF 125
           E  +I+   PR+N+      DK   + +IT    + P L   R      S       GPF
Sbjct: 62  EVRLIRAHLPRYNVRSARPLDK---WWVITIAKGLTPRLRVQRASAAARSRDVAQIIGPF 118

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRH----------------RTRPCLLFQIKRCSG 169
           AS   +   +  L     LR C+D +  H                RT  C  ++ +RC G
Sbjct: 119 ASRRPLVDALRVLNDALGLRDCSDRIRMHVRDVAELFEEHHPAMQRTPACHRYETRRCLG 178

Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229
           PC G  S  +Y   +  AK  L G + + ++ + R M  A+    YE A   RDRL AL 
Sbjct: 179 PCVGATSEYEYRTQLTRAKAVLEGRDDSPQQHLVREMAVASAALSYERAGWLRDRLTALQ 238

Query: 230 HIQNH 234
            +++ 
Sbjct: 239 DLESQ 243


>gi|332530365|ref|ZP_08406310.1| excinuclease [Hylemonella gracilis ATCC 19624]
 gi|332040176|gb|EGI76557.1| excinuclease [Hylemonella gracilis ATCC 19624]
          Length = 261

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 97/240 (40%), Gaps = 12/240 (5%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P   GVY         LY+GK+ +++ R+ S++ + +       M++Q   I F  T  
Sbjct: 5   LPRRSGVYFFWGSGTLPLYIGKSVDIRSRVLSHIRAEDE----AEMMAQTQRIDFIETAG 60

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK--IPALYKHRDSSTIQGS-YF 122
           E+ ALLLEA++IK+L P +NI LR  K+   I + +     IP +    D+        +
Sbjct: 61  EMGALLLEAHLIKKLCPLYNIRLRRQKTLCSIRLDESGSVLIPEIVSGHDTEIAGADNLY 120

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           G F SV A ++ +  L +   L      + +   R C   Q+K C G C G+     + +
Sbjct: 121 GLFGSVHAAKEKLRELAQQHRLCMGLLGLEKISRRGCFGLQLKTCLGACVGKEDRSAHDQ 180

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            +  A       +H ++            + D  +          L    +  ++     
Sbjct: 181 RLRSAL-----QDHKVQAWPYAGAVDLVEQTDGWTQRHRIQGWRFLGTWCSKTNTFTAHE 235


>gi|324113489|gb|EGC07464.1| GIY-G catalytic domain-containing protein [Escherichia fergusonii
           B253]
          Length = 295

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  ELPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + ++                     
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLKLDNQ----RTEVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  +  + + ++     L           R R C    +KRC+G C G+ S E 
Sbjct: 142 LFGLFANRRSALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESQET 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L       +  I      A  ++  E    H           N  D   
Sbjct: 202 HELRLRQSLERLRVVCWPWQGAI------ALKEQHPEMTQFHIIHNWLWLGAVNSLDEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|327393688|dbj|BAK11110.1| exconuclease Cho [Pantoea ananatis AJ13355]
          Length = 287

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 15/220 (6%)

Query: 6   MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY     +    LY+GK+ NL+ R+ S+  + +       M+ Q   + +  T 
Sbjct: 31  LPNQPGVYTFHGDSETLPLYIGKSVNLRSRVMSHFRTPDE----AKMLRQSRRVSWIPTA 86

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFG 123
            ++ ALLLEA MIK  +P FN  LR ++    + IT + K P +   RD    Q  + FG
Sbjct: 87  GDLGALLLEAQMIKTQQPLFNKRLRKNRQLCSLRITPEGK-PDVVYARDVDFSQSPNLFG 145

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
            + S  A  + +  L   + L      +     +R C    ++RC+G C G+     + +
Sbjct: 146 LYRSRFAALERLKQLADEYQLCHGLLGLEAVSASRGCFRSALRRCAGACCGKEPVSDHQD 205

Query: 183 F-------VHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215
                   V        G    ++E              Y
Sbjct: 206 RLLSALESVRVFCWPWQGAVALVEEGKHMTQIHVIDHWFY 245


>gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 466

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 5/194 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P+ PG Y         LY+GK+ +L+ R+  +        +   +  QI +I +  T
Sbjct: 200 DSIPDTPGCYIFYGDNKTPLYIGKSISLRNRVMGHFQGALTQRKEMKLSLQIRDIDWIET 259

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK---IPALYKHRD-SSTIQG 119
             E+ AL+LE+ +IK   P  NI LR  K      + +      +P L  H   +  +Q 
Sbjct: 260 SGELGALILESRLIKERMPSMNIKLRRSKDLCGWSLVEDESGVLLPQLVTHHQLAPGLQE 319

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH-RTRPCLLFQIKRCSGPCTGEISSE 178
           + +G F S       + ++ +   L      + +    + C  +Q+K+C G C       
Sbjct: 320 NLYGLFYSKREAHSYLKAIAKKHHLCEALLGLEKRVEGKSCFGYQVKQCGGACLNLTPIT 379

Query: 179 KYMEFVHEAKKFLS 192
            +   +    +   
Sbjct: 380 LHNLQLKTVLELFK 393


>gi|291617233|ref|YP_003519975.1| Cho [Pantoea ananatis LMG 20103]
 gi|291152263|gb|ADD76847.1| Cho [Pantoea ananatis LMG 20103]
          Length = 287

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 15/220 (6%)

Query: 6   MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY     +    LY+GK+ NL+ R+ S+  + +       M+ Q   + +  T 
Sbjct: 31  LPNQPGVYTFHGDSETLPLYIGKSVNLRSRVMSHFRTPDE----AKMLRQSRRVSWIPTA 86

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFG 123
            ++ ALLLEA MIK  +P FN  LR ++    + IT + K P +   RD    Q  + FG
Sbjct: 87  GDLGALLLEAQMIKTQQPLFNKRLRKNRQLCSLRITPEGK-PDVVYARDVDFSQSPNLFG 145

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
            + S  A  + +  L   + L      +     +R C    ++RC+G C G+     + +
Sbjct: 146 LYRSRFAALERLKQLADEYQLCHGLLGLEAVSASRGCFRSALRRCAGACCGKEPVSDHQD 205

Query: 183 F-------VHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215
                   V        G    ++E              Y
Sbjct: 206 RLLSALESVRVFCWPWQGAVALVEEGKHMTQIHVIDHWFY 245


>gi|206579748|ref|YP_002239041.1| excinuclease cho [Klebsiella pneumoniae 342]
 gi|290512907|ref|ZP_06552271.1| nucleotide excision repair endonuclease [Klebsiella sp. 1_1_55]
 gi|206568806|gb|ACI10582.1| excinuclease cho [Klebsiella pneumoniae 342]
 gi|289774520|gb|EFD82524.1| nucleotide excision repair endonuclease [Klebsiella sp. 1_1_55]
          Length = 287

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 9/181 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVYQ    +    LY+GK+ NL+ R+ S++     T     M+ Q   I + 
Sbjct: 28  LEALPKLPGVYQFHGDSDTMPLYIGKSVNLRSRVLSHLR----TPEEAAMLRQSRRITWQ 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
            T  E+ ALLLEA +IK  +P FN  LR +K      + D    P +   R+   + Q  
Sbjct: 84  RTAGELGALLLEARLIKEQQPLFNKRLRRNKQLCAWRLADHR--PQIVYAREVDFSHQQH 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            +G FA+  A  + + SL     L           R R C    + RC+G C G+ S E 
Sbjct: 142 LYGLFANRRAALQMLQSLADEQRLCYGLLGLEPLSRGRACFRSALGRCAGACCGKESVEA 201

Query: 180 Y 180
           +
Sbjct: 202 H 202


>gi|288935945|ref|YP_003440004.1| excinuclease ABC C subunit domain protein [Klebsiella variicola
           At-22]
 gi|288890654|gb|ADC58972.1| Excinuclease ABC C subunit domain protein [Klebsiella variicola
           At-22]
          Length = 287

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 9/181 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVYQ    +    LY+GK+ NL+ R+ S++     T     M+ Q   I + 
Sbjct: 28  LEALPKLPGVYQFHGDSDTMPLYIGKSVNLRSRVLSHLR----TPEEAAMLRQSRRITWQ 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
            T  E+ ALLLEA +IK  +P FN  LR +K      + D    P +   R+   + Q  
Sbjct: 84  RTAGELGALLLEARLIKEQQPLFNKRLRRNKQLCAWRLADHR--PQIVYAREVDFSHQQH 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            +G FA+  A  + + SL     L           R R C    + RC+G C G+ S E 
Sbjct: 142 LYGLFANRRAALQMLQSLADEQRLCYGLLGLEPLSRGRACFRSALGRCAGACCGKESVEA 201

Query: 180 Y 180
           +
Sbjct: 202 H 202


>gi|313619291|gb|EFR91030.1| excinuclease ABC subunit C [Listeria innocua FSL S4-378]
          Length = 88

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 6  MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
          +P+ PG Y M D  G ++YVGKA  L+ R++SY    + + +   ++ +I +  + VT +
Sbjct: 13 LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFSGTHDS-KTQRLVQEIVDFEYIVTSS 71

Query: 66 EVEALLLEANMIKRLKP 82
           VEALLLE N+IK+  P
Sbjct: 72 NVEALLLEINLIKKHDP 88


>gi|171060928|ref|YP_001793277.1| excinuclease ABC subunit C [Leptothrix cholodnii SP-6]
 gi|170778373|gb|ACB36512.1| Excinuclease ABC C subunit domain protein [Leptothrix cholodnii
           SP-6]
          Length = 275

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 77/193 (39%), Gaps = 7/193 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
               +P  PGVY     +   LY+GK+ N++ R+ S++           M+ Q   + + 
Sbjct: 7   DLRALPSAPGVYLFHGESALPLYIGKSVNIRSRVLSHLREPGE----ARMLLQTRRVTWI 62

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK--IPALYKHRDSS-TIQ 118
            T  E+ ALLLE+ +IK  +P +N  LR  +               PAL   RD    + 
Sbjct: 63  RTAGEIGALLLESRLIKAQQPLYNKQLRRSRELCSWRFCGSQPAVAPALVYSRDVDFAVT 122

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
              FG F S  A +  +    +   L   A  +     R C   Q+ RC G C G  S+ 
Sbjct: 123 DGLFGLFRSAHAAKDFLIDTAQAHRLCLVALGLEPATRRGCFGLQLGRCDGVCVGRESAA 182

Query: 179 KYMEFVHEAKKFL 191
            +   V +A    
Sbjct: 183 SHALRVAQALAQC 195


>gi|193068957|ref|ZP_03049916.1| excinuclease cho [Escherichia coli E110019]
 gi|192957752|gb|EDV88196.1| excinuclease cho [Escherichia coli E110019]
          Length = 295

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 96/254 (37%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + S      L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQSCADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|317047851|ref|YP_004115499.1| excinuclease ABC subunit C domain-containing protein [Pantoea sp.
           At-9b]
 gi|316949468|gb|ADU68943.1| Excinuclease ABC C subunit domain protein [Pantoea sp. At-9b]
          Length = 286

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 9/190 (4%)

Query: 6   MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY     +    LY+GK+ NL+ R+ S+  + +       M+ Q   I +  T 
Sbjct: 31  LPNQPGVYVFHGESDNLPLYIGKSVNLRSRVMSHFRTPDE----ASMLRQARRISWIPTA 86

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFG 123
            ++ A LLEA MIK  +P FN  LR ++    + +     +P +   RD   +   + +G
Sbjct: 87  GDLGAQLLEAQMIKTQQPLFNKRLRKNRQLCSLQL--NDTVPQVVYARDLDFSRTANLYG 144

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEKYME 182
            F S  A  + + S+     L      +   R  R C    +KRC+G C G    E + +
Sbjct: 145 LFRSRHAALEKLKSIADEQRLCHGLLGLENLRSGRGCFRAALKRCAGACCGNEPPEAHQQ 204

Query: 183 FVHEAKKFLS 192
            + +A   L 
Sbjct: 205 RLQQALDALR 214


>gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
           CH34]
          Length = 530

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 3/193 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + + +P+ PGVY         LYVGK+ +L++RI+++   ++   R   +   +  + + 
Sbjct: 222 ALDDVPDRPGVYLFYGDDDVPLYVGKSIHLRQRIRAHFAGDHSNAREMRLSRSVRRVEWR 281

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
            T  E+ ALL EA+++K L+P  N LLR +       + D    P L   R    +   +
Sbjct: 282 ETGGEIGALLSEAHLVKTLRPLHNHLLRQNTELFSWEMLDGLPAPRLRSDRHVDFSRHAA 341

Query: 121 YFGPFASVDAVEKTINSLQRTFFLR--SCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
            +G F S  + +  + SL     L   +        R  PC   Q+ RC+G CTGE S  
Sbjct: 342 LYGAFPSRASAQARLRSLADEHRLCLATLMLEGTTRRGSPCFARQLHRCAGACTGEESQT 401

Query: 179 KYMEFVHEAKKFL 191
            + E   EA   +
Sbjct: 402 AHRERTVEAMASM 414


>gi|218512457|ref|ZP_03509297.1| excinuclease ABC subunit C [Rhizobium etli 8C-3]
          Length = 89

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/87 (60%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKK-AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS 585
           LYFIQR+RDEAHRFAI +HR RRKK    +PLDEI GIGP RKR LLQ FGT K +SR++
Sbjct: 2   LYFIQRMRDEAHRFAIGSHRARRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRAA 61

Query: 586 PETLASIEGISKKIACKIYNHFHKNTS 612
              L ++EGIS+ +A ++YNHFH + +
Sbjct: 62  LSDLMAVEGISEAVARQVYNHFHDDAA 88


>gi|82776817|ref|YP_403166.1| nucleotide excision repair endonuclease [Shigella dysenteriae
           Sd197]
 gi|81240965|gb|ABB61675.1| putative excinuclease subunit [Shigella dysenteriae Sd197]
          Length = 288

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R++S++   +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVRSHLRPPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + S+     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 Y 180
           +
Sbjct: 202 H 202


>gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 475

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 31/215 (14%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY   D A  +LYVGK+  L++R+  + ++     R   ++ QI  + +  
Sbjct: 197 LDALPDRPGVYLCYDEADSLLYVGKSIRLRERVWDHFYAATSQQREMRLVQQIRRLEWIE 256

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYI----------LIT-----DKHKIPA 107
           T TE+ ALLLEA +IK  +P              I          L T      +   P 
Sbjct: 257 TPTELSALLLEARLIKERQP--------------ILNRRLRRRENLFTIAWEGIERGSPR 302

Query: 108 LYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRC 167
           +   RD     G  +G FA+     +++  L R   L   A  + +  + PC   Q+K+C
Sbjct: 303 IVPLRDC--DGGELYGSFANAYRARQSLRRLARRHGLCLKALGLEKPTSGPCFAHQLKQC 360

Query: 168 SGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKI 202
            G C G  S   +   +  A + L   +      +
Sbjct: 361 RGACCGAESRLLHDLRLSAALRHLRIEHWPWDGPM 395


>gi|301026471|ref|ZP_07189903.1| GIY-YIG catalytic domain protein [Escherichia coli MS 69-1]
 gi|300395537|gb|EFJ79075.1| GIY-YIG catalytic domain protein [Escherichia coli MS 69-1]
          Length = 295

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L             N   A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------NGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|293410057|ref|ZP_06653633.1| nucleotide excision repair endonuclease [Escherichia coli B354]
 gi|291470525|gb|EFF13009.1| nucleotide excision repair endonuclease [Escherichia coli B354]
          Length = 295

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L             N   A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------NGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRAPAGFDHDGY 269


>gi|168749441|ref|ZP_02774463.1| excinuclease cho [Escherichia coli O157:H7 str. EC4113]
 gi|168756745|ref|ZP_02781752.1| excinuclease cho [Escherichia coli O157:H7 str. EC4401]
 gi|168770505|ref|ZP_02795512.1| excinuclease cho [Escherichia coli O157:H7 str. EC4486]
 gi|168774956|ref|ZP_02799963.1| excinuclease cho [Escherichia coli O157:H7 str. EC4196]
 gi|168782159|ref|ZP_02807166.1| excinuclease cho [Escherichia coli O157:H7 str. EC4076]
 gi|195937425|ref|ZP_03082807.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7
           str. EC4024]
 gi|208810455|ref|ZP_03252331.1| excinuclease cho [Escherichia coli O157:H7 str. EC4206]
 gi|208817044|ref|ZP_03258164.1| excinuclease cho [Escherichia coli O157:H7 str. EC4045]
 gi|208821282|ref|ZP_03261602.1| excinuclease cho [Escherichia coli O157:H7 str. EC4042]
 gi|209400159|ref|YP_002270810.1| excinuclease cho [Escherichia coli O157:H7 str. EC4115]
 gi|254793359|ref|YP_003078196.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7
           str. TW14359]
 gi|187769464|gb|EDU33308.1| excinuclease cho [Escherichia coli O157:H7 str. EC4196]
 gi|188016228|gb|EDU54350.1| excinuclease cho [Escherichia coli O157:H7 str. EC4113]
 gi|189000303|gb|EDU69289.1| excinuclease cho [Escherichia coli O157:H7 str. EC4076]
 gi|189356142|gb|EDU74561.1| excinuclease cho [Escherichia coli O157:H7 str. EC4401]
 gi|189360647|gb|EDU79066.1| excinuclease cho [Escherichia coli O157:H7 str. EC4486]
 gi|208724971|gb|EDZ74678.1| excinuclease cho [Escherichia coli O157:H7 str. EC4206]
 gi|208731387|gb|EDZ80076.1| excinuclease cho [Escherichia coli O157:H7 str. EC4045]
 gi|208741405|gb|EDZ89087.1| excinuclease cho [Escherichia coli O157:H7 str. EC4042]
 gi|209161559|gb|ACI38992.1| excinuclease cho [Escherichia coli O157:H7 str. EC4115]
 gi|209768636|gb|ACI82630.1| putative excinuclease subunit [Escherichia coli]
 gi|254592759|gb|ACT72120.1| endonuclease of nucleotide excision repair [Escherichia coli
           O157:H7 str. TW14359]
          Length = 295

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + S+     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSQEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|82543856|ref|YP_407803.1| nucleotide excision repair endonuclease [Shigella boydii Sb227]
 gi|187732908|ref|YP_001880533.1| nucleotide excision repair endonuclease [Shigella boydii CDC
           3083-94]
 gi|81245267|gb|ABB65975.1| putative excinuclease subunit [Shigella boydii Sb227]
 gi|187429900|gb|ACD09174.1| excinuclease cho [Shigella boydii CDC 3083-94]
 gi|320173592|gb|EFW48785.1| nucleotide excision repair endonuclease [Shigella dysenteriae CDC
           74-1112]
          Length = 295

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|218705239|ref|YP_002412758.1| nucleotide excision repair endonuclease [Escherichia coli UMN026]
 gi|293405239|ref|ZP_06649231.1| nucleotide excision repair endonuclease [Escherichia coli FVEC1412]
 gi|298380882|ref|ZP_06990481.1| excinuclease cho [Escherichia coli FVEC1302]
 gi|218432336|emb|CAR13226.1| endonuclease of nucleotide excision repair [Escherichia coli
           UMN026]
 gi|291427447|gb|EFF00474.1| nucleotide excision repair endonuclease [Escherichia coli FVEC1412]
 gi|298278324|gb|EFI19838.1| excinuclease cho [Escherichia coli FVEC1302]
          Length = 295

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|157156765|ref|YP_001463037.1| nucleotide excision repair endonuclease [Escherichia coli E24377A]
 gi|191169568|ref|ZP_03031292.1| excinuclease cho [Escherichia coli B7A]
 gi|260855606|ref|YP_003229497.1| endonuclease [Escherichia coli O26:H11 str. 11368]
 gi|260868266|ref|YP_003234668.1| endonuclease [Escherichia coli O111:H- str. 11128]
 gi|300924787|ref|ZP_07140728.1| GIY-YIG catalytic domain protein [Escherichia coli MS 182-1]
 gi|301327475|ref|ZP_07220709.1| GIY-YIG catalytic domain protein [Escherichia coli MS 78-1]
 gi|309793514|ref|ZP_07687941.1| GIY-YIG catalytic domain protein [Escherichia coli MS 145-7]
 gi|157078795|gb|ABV18503.1| excinuclease cho [Escherichia coli E24377A]
 gi|190900390|gb|EDV60215.1| excinuclease cho [Escherichia coli B7A]
 gi|257754255|dbj|BAI25757.1| endonuclease [Escherichia coli O26:H11 str. 11368]
 gi|257764622|dbj|BAI36117.1| endonuclease [Escherichia coli O111:H- str. 11128]
 gi|300419040|gb|EFK02351.1| GIY-YIG catalytic domain protein [Escherichia coli MS 182-1]
 gi|300845952|gb|EFK73712.1| GIY-YIG catalytic domain protein [Escherichia coli MS 78-1]
 gi|308123101|gb|EFO60363.1| GIY-YIG catalytic domain protein [Escherichia coli MS 145-7]
          Length = 295

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + S+     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 623

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 17/224 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY     A  VLY+G A +L +R+  Y + ++   R+  M+S    +       
Sbjct: 256 LPRRPGVYLFRGPADEVLYIGTAVDLHRRVSGYFNGSDGRARMAEMVSLAVRVDHVECAH 315

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPF 125
            +EA + E N++   KP +N   R+ +   +I +T   + P L   R          GP 
Sbjct: 316 ALEAGVAELNLLGVHKPSYNRRSRNPQRGWWIALT-AERFPRLRVTRSP---GPESLGPV 371

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKR-------------CSGPCT 172
           AS        + +     LR+C   + +     C                    C     
Sbjct: 372 ASRAVAADVADVIAGAAGLRTCTAELRKASHHWCEGSAQADRLPDPLVAAVPGVCRAASD 431

Query: 173 GEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYE 216
              +   Y+  V   ++ +SG +  L   +   +   + +  +E
Sbjct: 432 RPQTVTDYLCRVEAVRELISGRSDALVVALHERVASLSQQHRFE 475


>gi|331673288|ref|ZP_08374056.1| excinuclease cho [Escherichia coli TA280]
 gi|331069486|gb|EGI40873.1| excinuclease cho [Escherichia coli TA280]
          Length = 295

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + +A + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQALERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|284921660|emb|CBG34732.1| excinuclease Cho [Escherichia coli 042]
          Length = 295

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L             N   A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------NGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 462

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 1/212 (0%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P   GVY         LY+GKA NL++R+ S+   ++ + +   +  QI  I +  T
Sbjct: 199 DDLPSTHGVYLFFGEGALPLYIGKANNLRRRVLSHFSGDHLSAKELELSQQIRRIEWIDT 258

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             E+ ALL EA ++K++ P  N  LR   +     +  + +I  +      +  +   FG
Sbjct: 259 AGELGALLKEAMLVKQMSPSHNRQLRRSSAACLWRLDAQSQITLVKTDDLLAADEAELFG 318

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           PFA+       + ++     L      + +    +PC   Q+ +C G C    S   +  
Sbjct: 319 PFATHRKATTALTAIATARQLCLVLLGLEKVAAGKPCFASQVGQCKGACCARESLASHTA 378

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214
            +  A +            I      A    D
Sbjct: 379 RLRMALETSRLHPWPYAGPIGIREEAALHVID 410


>gi|16129695|ref|NP_416255.1| endonuclease of nucleotide excision repair [Escherichia coli str.
           K-12 substr. MG1655]
 gi|74311940|ref|YP_310359.1| nucleotide excision repair endonuclease [Shigella sonnei Ss046]
 gi|89108580|ref|AP_002360.1| endonuclease of nucleotide excision repair [Escherichia coli str.
           K-12 substr. W3110]
 gi|157161201|ref|YP_001458519.1| nucleotide excision repair endonuclease [Escherichia coli HS]
 gi|170019912|ref|YP_001724866.1| nucleotide excision repair endonuclease [Escherichia coli ATCC
           8739]
 gi|170081398|ref|YP_001730718.1| endonuclease of nucleotide excision repair [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188495567|ref|ZP_03002837.1| excinuclease cho [Escherichia coli 53638]
 gi|194438478|ref|ZP_03070567.1| excinuclease cho [Escherichia coli 101-1]
 gi|238900955|ref|YP_002926751.1| endonuclease of nucleotide excision repair [Escherichia coli
           BW2952]
 gi|253773305|ref|YP_003036136.1| nucleotide excision repair endonuclease [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161800|ref|YP_003044908.1| nucleotide excision repair endonuclease [Escherichia coli B str.
           REL606]
 gi|256022596|ref|ZP_05436461.1| nucleotide excision repair endonuclease [Escherichia sp. 4_1_40B]
 gi|300951344|ref|ZP_07165187.1| GIY-YIG catalytic domain protein [Escherichia coli MS 116-1]
 gi|300958634|ref|ZP_07170758.1| GIY-YIG catalytic domain protein [Escherichia coli MS 175-1]
 gi|301025328|ref|ZP_07188891.1| GIY-YIG catalytic domain protein [Escherichia coli MS 196-1]
 gi|301647935|ref|ZP_07247711.1| GIY-YIG catalytic domain protein [Escherichia coli MS 146-1]
 gi|307138399|ref|ZP_07497755.1| nucleotide excision repair endonuclease [Escherichia coli H736]
 gi|331642341|ref|ZP_08343476.1| excinuclease cho [Escherichia coli H736]
 gi|20178186|sp|P76213|CHO_ECOLI RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho;
           AltName: Full=UvrC homolog protein
 gi|1788037|gb|AAC74811.1| endonuclease of nucleotide excision repair [Escherichia coli str.
           K-12 substr. MG1655]
 gi|73855417|gb|AAZ88124.1| putative excinuclease subunit [Shigella sonnei Ss046]
 gi|85675098|dbj|BAE76514.1| endonuclease of nucleotide excision repair [Escherichia coli str.
           K12 substr. W3110]
 gi|157066881|gb|ABV06136.1| excinuclease cho [Escherichia coli HS]
 gi|169754840|gb|ACA77539.1| Excinuclease ABC C subunit domain protein [Escherichia coli ATCC
           8739]
 gi|169889233|gb|ACB02940.1| endonuclease of nucleotide excision repair [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188490766|gb|EDU65869.1| excinuclease cho [Escherichia coli 53638]
 gi|194422488|gb|EDX38486.1| excinuclease cho [Escherichia coli 101-1]
 gi|238861029|gb|ACR63027.1| endonuclease of nucleotide excision repair [Escherichia coli
           BW2952]
 gi|242377462|emb|CAQ32215.1| endonuclease of nucleotide excision repair [Escherichia coli
           BL21(DE3)]
 gi|253324349|gb|ACT28951.1| Excinuclease ABC C subunit domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973701|gb|ACT39372.1| endonuclease of nucleotide excision repair [Escherichia coli B str.
           REL606]
 gi|253977895|gb|ACT43565.1| endonuclease of nucleotide excision repair [Escherichia coli
           BL21(DE3)]
 gi|260449137|gb|ACX39559.1| Excinuclease ABC C subunit domain protein [Escherichia coli DH1]
 gi|299880126|gb|EFI88337.1| GIY-YIG catalytic domain protein [Escherichia coli MS 196-1]
 gi|300314685|gb|EFJ64469.1| GIY-YIG catalytic domain protein [Escherichia coli MS 175-1]
 gi|300449407|gb|EFK13027.1| GIY-YIG catalytic domain protein [Escherichia coli MS 116-1]
 gi|301073958|gb|EFK88764.1| GIY-YIG catalytic domain protein [Escherichia coli MS 146-1]
 gi|309701963|emb|CBJ01277.1| excinuclease Cho [Escherichia coli ETEC H10407]
 gi|315136382|dbj|BAJ43541.1| nucleotide excision repair endonuclease [Escherichia coli DH1]
 gi|323936998|gb|EGB33278.1| GIY-YIG catalytic domain-containing protein [Escherichia coli
           E1520]
 gi|323940594|gb|EGB36785.1| GIY-G catalytic domain-containing protein [Escherichia coli E482]
 gi|323962051|gb|EGB57648.1| GIY-G catalytic domain-containing protein [Escherichia coli H489]
 gi|323974016|gb|EGB69187.1| GIY-G catalytic domain-containing protein [Escherichia coli TA007]
 gi|331039139|gb|EGI11359.1| excinuclease cho [Escherichia coli H736]
          Length = 295

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|293415058|ref|ZP_06657701.1| excinuclease cho [Escherichia coli B185]
 gi|291432706|gb|EFF05685.1| excinuclease cho [Escherichia coli B185]
          Length = 295

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSQAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +      + N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGVVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|209919102|ref|YP_002293186.1| nucleotide excision repair endonuclease [Escherichia coli SE11]
 gi|307310687|ref|ZP_07590333.1| Excinuclease ABC C subunit domain protein [Escherichia coli W]
 gi|209912361|dbj|BAG77435.1| excinuclease [Escherichia coli SE11]
 gi|306908865|gb|EFN39361.1| Excinuclease ABC C subunit domain protein [Escherichia coli W]
 gi|315061044|gb|ADT75371.1| endonuclease of nucleotide excision repair [Escherichia coli W]
 gi|323378383|gb|ADX50651.1| Excinuclease ABC C subunit domain protein [Escherichia coli KO11]
 gi|324016496|gb|EGB85715.1| GIY-YIG catalytic domain protein [Escherichia coli MS 117-3]
          Length = 295

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + S+     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|15802152|ref|NP_288174.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7
           EDL933]
 gi|15831701|ref|NP_310474.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7
           str. Sakai]
 gi|168762193|ref|ZP_02787200.1| excinuclease cho [Escherichia coli O157:H7 str. EC4501]
 gi|168788140|ref|ZP_02813147.1| excinuclease cho [Escherichia coli O157:H7 str. EC869]
 gi|168800076|ref|ZP_02825083.1| excinuclease cho [Escherichia coli O157:H7 str. EC508]
 gi|193065778|ref|ZP_03046841.1| excinuclease cho [Escherichia coli E22]
 gi|194428498|ref|ZP_03061037.1| excinuclease cho [Escherichia coli B171]
 gi|217328708|ref|ZP_03444789.1| excinuclease cho [Escherichia coli O157:H7 str. TW14588]
 gi|218695299|ref|YP_002402966.1| nucleotide excision repair endonuclease [Escherichia coli 55989]
 gi|256018066|ref|ZP_05431931.1| nucleotide excision repair endonuclease [Shigella sp. D9]
 gi|260844091|ref|YP_003221869.1| endonuclease [Escherichia coli O103:H2 str. 12009]
 gi|261227767|ref|ZP_05942048.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261258068|ref|ZP_05950601.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7
           str. FRIK966]
 gi|291282920|ref|YP_003499738.1| Excinuclease cho [Escherichia coli O55:H7 str. CB9615]
 gi|293446113|ref|ZP_06662535.1| hypothetical protein ECCG_00261 [Escherichia coli B088]
 gi|332279106|ref|ZP_08391519.1| nucleotide excision repair endonuclease [Shigella sp. D9]
 gi|20178210|sp|Q8XDZ7|CHO_ECO57 RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho;
           AltName: Full=UvrC homolog protein
 gi|12515760|gb|AAG56727.1|AE005397_4 putative excinuclease subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|13361914|dbj|BAB35870.1| putative excinuclease subunit [Escherichia coli O157:H7 str. Sakai]
 gi|189367474|gb|EDU85890.1| excinuclease cho [Escherichia coli O157:H7 str. EC4501]
 gi|189372076|gb|EDU90492.1| excinuclease cho [Escherichia coli O157:H7 str. EC869]
 gi|189377548|gb|EDU95964.1| excinuclease cho [Escherichia coli O157:H7 str. EC508]
 gi|192926550|gb|EDV81181.1| excinuclease cho [Escherichia coli E22]
 gi|194413376|gb|EDX29659.1| excinuclease cho [Escherichia coli B171]
 gi|209768628|gb|ACI82626.1| putative excinuclease subunit [Escherichia coli]
 gi|209768630|gb|ACI82627.1| putative excinuclease subunit [Escherichia coli]
 gi|209768632|gb|ACI82628.1| putative excinuclease subunit [Escherichia coli]
 gi|209768634|gb|ACI82629.1| putative excinuclease subunit [Escherichia coli]
 gi|217318055|gb|EEC26482.1| excinuclease cho [Escherichia coli O157:H7 str. TW14588]
 gi|218352031|emb|CAU97768.1| endonuclease of nucleotide excision repair [Escherichia coli 55989]
 gi|257759238|dbj|BAI30735.1| endonuclease [Escherichia coli O103:H2 str. 12009]
 gi|290762793|gb|ADD56754.1| Excinuclease cho [Escherichia coli O55:H7 str. CB9615]
 gi|291322943|gb|EFE62371.1| hypothetical protein ECCG_00261 [Escherichia coli B088]
 gi|320641589|gb|EFX10977.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7
           str. G5101]
 gi|320646948|gb|EFX15781.1| nucleotide excision repair endonuclease [Escherichia coli O157:H-
           str. 493-89]
 gi|320652230|gb|EFX20528.1| nucleotide excision repair endonuclease [Escherichia coli O157:H-
           str. H 2687]
 gi|320657831|gb|EFX25593.1| nucleotide excision repair endonuclease [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320658406|gb|EFX26100.1| nucleotide excision repair endonuclease [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668303|gb|EFX35130.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7
           str. LSU-61]
 gi|323948132|gb|EGB44122.1| GIY-YIG catalytic domain-containing protein [Escherichia coli H120]
 gi|324119226|gb|EGC13114.1| GIY-G catalytic domain-containing protein [Escherichia coli E1167]
 gi|332101458|gb|EGJ04804.1| nucleotide excision repair endonuclease [Shigella sp. D9]
          Length = 295

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + S+     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|331653142|ref|ZP_08354147.1| excinuclease cho [Escherichia coli M718]
 gi|331049240|gb|EGI21312.1| excinuclease cho [Escherichia coli M718]
          Length = 295

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSQAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|323968509|gb|EGB63915.1| GIY-G catalytic domain-containing protein [Escherichia coli M863]
 gi|327252858|gb|EGE64512.1| hypothetical protein ECSTEC7V_2103 [Escherichia coli STEC_7v]
          Length = 295

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 95/254 (37%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S + 
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDD 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + +A   L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQALARLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 MLIRTPAGFDHDGY 269


>gi|325103921|ref|YP_004273575.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
 gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
          Length = 459

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 3/154 (1%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           EQ+PE PGVY   D  G+++YVGKA N++KR+ S+   NN + R    I  I++I F  T
Sbjct: 197 EQLPERPGVYFFRDKHGKLIYVGKAINIRKRVHSHFTGNNTSQRRQLFIKNISHIDFEET 256

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRD-DKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
            TE+ ALL E + IK+  P +N  L+  +  F  I   D      L   R     +   +
Sbjct: 257 GTELMALLKECHYIKQHWPEYNRALKQYEPKFGLIDYVDNSGFIRLCICRLPVGSRALCY 316

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT 156
             F +V    + +  L   F L S     +R R 
Sbjct: 317 --FDNVVEATQCLLGLIDRFGLDSRLCVFYRDRK 348


>gi|30062992|ref|NP_837163.1| nucleotide excision repair endonuclease [Shigella flexneri 2a str.
           2457T]
 gi|56479913|ref|NP_707370.2| nucleotide excision repair endonuclease [Shigella flexneri 2a str.
           301]
 gi|29429141|sp|P59361|CHO_SHIFL RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho;
           AltName: Full=UvrC homolog protein
 gi|30041241|gb|AAP16970.1| putative excinuclease subunit [Shigella flexneri 2a str. 2457T]
 gi|56383464|gb|AAN43077.2| putative excinuclease subunit [Shigella flexneri 2a str. 301]
 gi|281600896|gb|ADA73880.1| Excinuclease cho [Shigella flexneri 2002017]
 gi|313649234|gb|EFS13668.1| excinuclease cho [Shigella flexneri 2a str. 2457T]
 gi|332762516|gb|EGJ92781.1| hypothetical protein SF434370_0102 [Shigella flexneri 4343-70]
          Length = 295

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + S+     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|170683911|ref|YP_001743508.1| nucleotide excision repair endonuclease [Escherichia coli SMS-3-5]
 gi|170521629|gb|ACB19807.1| excinuclease cho [Escherichia coli SMS-3-5]
          Length = 295

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S + 
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDD 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 MLIRTPAGFDHDGY 269


>gi|218554307|ref|YP_002387220.1| nucleotide excision repair endonuclease [Escherichia coli IAI1]
 gi|331677618|ref|ZP_08378293.1| excinuclease cho [Escherichia coli H591]
 gi|218361075|emb|CAQ98658.1| endonuclease of nucleotide excision repair [Escherichia coli IAI1]
 gi|331074078|gb|EGI45398.1| excinuclease cho [Escherichia coli H591]
          Length = 295

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + S+     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588]
 gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM
           2588]
          Length = 456

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 12/192 (6%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY   D  G+V+YVGKA N++KR+ S+   N+   +    +  I +I   VT T
Sbjct: 194 LPGTPGVYYFHDQKGKVVYVGKAKNIRKRVNSHFTGNSAGRKRQEFLRNIYSISHEVTGT 253

Query: 66  EVEALLLEANMIKRLKPRFN-----ILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           E+ A +LE+  IKRL P +N     I  +    + +    D+     L    +      +
Sbjct: 254 ELMAHILESVEIKRLWPVYNYSQKYIEFK----YGFYCFEDQEGYLRLVI--EKRRKYSA 307

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
               F  +    + +  L R F L        +     C       C G C  + +SE Y
Sbjct: 308 PLHSFPLLVQGHQMLRGLIREFDLCPRL-CFLQKGQGACSPIPDHTCRGACEKKETSETY 366

Query: 181 MEFVHEAKKFLS 192
              V  A   + 
Sbjct: 367 NLRVKAAIIHMQ 378


>gi|332090670|gb|EGI95765.1| hypothetical protein SB521682_1925 [Shigella boydii 5216-82]
          Length = 295

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPSRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|281178812|dbj|BAI55142.1| excinuclease [Escherichia coli SE15]
          Length = 295

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 96/254 (37%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRASN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + +A + L                 A  ++  E    H  +        N      
Sbjct: 202 HALRLRQALERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRAPAGFDHDGY 269


>gi|237731248|ref|ZP_04561729.1| nucleotide excision repair endonuclease [Citrobacter sp. 30_2]
 gi|226906787|gb|EEH92705.1| nucleotide excision repair endonuclease [Citrobacter sp. 30_2]
          Length = 295

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 97/251 (38%), Gaps = 15/251 (5%)

Query: 6   MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY     +    LY+GK+ N++ R+ +++ + +       M+ Q   I +  T 
Sbjct: 31  LPTAPGVYLFHSESDTMPLYIGKSVNIRSRVLAHLRTADE----AAMLRQAKRISWICTA 86

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFG 123
            E+ ALLLEA +IK  +P FN  LR ++    + +TD+     +   RD       + FG
Sbjct: 87  GEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLTDRTV--QVVYARDIDFSHAPNLFG 144

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
            FA+  A  + + SL     L           R R C    +KRC+G C G+ S E +  
Sbjct: 145 LFANRRAALQALQSLADEQQLCYGLLGLEPLSRGRVCFRSALKRCAGACCGKESHEAHHL 204

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            +  A + +          I      A  +   E    H           +  D      
Sbjct: 205 RLLAALERVRVICWPWSNAI------ALQETGAEMTQYHIINNWLWLGAVSTLDEAATLA 258

Query: 243 DCFSLYHNKNL 253
              + + +   
Sbjct: 259 RMPAGFDHDGY 269


>gi|323978077|gb|EGB73163.1| GIY-G catalytic domain-containing protein [Escherichia coli
           TW10509]
          Length = 295

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 96/254 (37%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S + 
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESPDD 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + +A + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQALERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 MLIRTPAGFDHDGY 269


>gi|306815008|ref|ZP_07449164.1| nucleotide excision repair endonuclease [Escherichia coli NC101]
 gi|305851656|gb|EFM52109.1| nucleotide excision repair endonuclease [Escherichia coli NC101]
          Length = 295

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 95/254 (37%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S + 
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDA 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +     ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRFRQSLERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 MLIRTPAGFDHDGY 269


>gi|218699692|ref|YP_002407321.1| nucleotide excision repair endonuclease [Escherichia coli IAI39]
 gi|218369678|emb|CAR17447.1| endonuclease of nucleotide excision repair [Escherichia coli IAI39]
          Length = 295

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 96/254 (37%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + S+     L           R R C    +KRC+G C G+ S + 
Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDD 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 MLIRTPAGFDHDGY 269


>gi|26247994|ref|NP_754034.1| nucleotide excision repair endonuclease [Escherichia coli CFT073]
 gi|91210956|ref|YP_540942.1| nucleotide excision repair endonuclease [Escherichia coli UTI89]
 gi|117623913|ref|YP_852826.1| nucleotide excision repair endonuclease [Escherichia coli APEC O1]
 gi|218558609|ref|YP_002391522.1| nucleotide excision repair endonuclease [Escherichia coli S88]
 gi|218689682|ref|YP_002397894.1| nucleotide excision repair endonuclease [Escherichia coli ED1a]
 gi|237705691|ref|ZP_04536172.1| nucleotide excision repair endonuclease [Escherichia sp. 3_2_53FAA]
 gi|331647233|ref|ZP_08348327.1| excinuclease cho [Escherichia coli M605]
 gi|29427411|sp|P59439|CHO_ECOL6 RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho;
           AltName: Full=UvrC homolog protein
 gi|26108397|gb|AAN80599.1|AE016761_174 Hypothetical protein ydjQ [Escherichia coli CFT073]
 gi|91072530|gb|ABE07411.1| hypothetical protein YdjQ [Escherichia coli UTI89]
 gi|115513037|gb|ABJ01112.1| endonuclease of nucleotide excision repair [Escherichia coli APEC
           O1]
 gi|218365378|emb|CAR03101.1| endonuclease of nucleotide excision repair [Escherichia coli S88]
 gi|218427246|emb|CAR08136.2| endonuclease of nucleotide excision repair [Escherichia coli ED1a]
 gi|222033494|emb|CAP76235.1| excinuclease cho [Escherichia coli LF82]
 gi|226900448|gb|EEH86707.1| nucleotide excision repair endonuclease [Escherichia sp. 3_2_53FAA]
 gi|294489710|gb|ADE88466.1| excinuclease cho [Escherichia coli IHE3034]
 gi|307553760|gb|ADN46535.1| excinuclease Cho [Escherichia coli ABU 83972]
 gi|307626774|gb|ADN71078.1| nucleotide excision repair endonuclease [Escherichia coli UM146]
 gi|312946341|gb|ADR27168.1| nucleotide excision repair endonuclease [Escherichia coli O83:H1
           str. NRG 857C]
 gi|323952247|gb|EGB48120.1| GIY-G catalytic domain-containing protein [Escherichia coli H252]
 gi|323956567|gb|EGB52306.1| GIY-G catalytic domain-containing protein [Escherichia coli H263]
 gi|331044016|gb|EGI16152.1| excinuclease cho [Escherichia coli M605]
          Length = 295

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 95/254 (37%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S + 
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDD 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N      
Sbjct: 202 HALRLRQSLERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRAPAGFDHDGY 269


>gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
 gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
          Length = 532

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 5/183 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + E +P  PGVY         LYVGK+ +L++RI ++   +    +   +   +  + + 
Sbjct: 220 ALEDVPASPGVYIFYGDQDVPLYVGKSVHLRQRIGAHFSGDYRYGKDMRLARLVRRVEWR 279

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGS 120
            T  E  ALLLEA ++K ++P  N +LR +   + +  +  +  +P L   RD+   +  
Sbjct: 280 ETGGETGALLLEAQLVKAMQPVHNQMLRRNTRLYAW-ELPQQLPVPRLRSDRDTDFCRHR 338

Query: 121 -YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISS 177
             FG F S  A E  + +L     L     S+ +   R  PC   Q+ RC+G C G  S 
Sbjct: 339 DLFGVFGSRGAAEARLRALAEEHGLCMATLSLEKTTRRGSPCFARQVHRCAGACVGAESP 398

Query: 178 EKY 180
            ++
Sbjct: 399 REH 401


>gi|146311359|ref|YP_001176433.1| nucleotide excision repair endonuclease [Enterobacter sp. 638]
 gi|145318235|gb|ABP60382.1| Excinuclease Cho [Enterobacter sp. 638]
          Length = 292

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I + 
Sbjct: 28  LEALPKQPGVYFFHGESDAMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRITWM 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-S 120
            T  E+ ALLLEA +IK  +P FN  LR ++    + IT     P +   RD        
Sbjct: 84  QTAGELGALLLEARLIKEQQPLFNKRLRRNRQLCSLQITGGK--PQVVYARDVDFSHAPG 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
             G FA+  A  + + +L     L      +    R R C  F +KRC+G C G+ S E+
Sbjct: 142 LHGLFANRRAALQALQTLADAQQLCYGVLGLESLTRGRACFRFALKRCAGACCGKESIEE 201

Query: 180 Y 180
           +
Sbjct: 202 H 202


>gi|289677234|ref|ZP_06498124.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae FF5]
          Length = 111

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 3/112 (2%)

Query: 458 YSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKG-E 516
                 PDV+++DGGKGQ+S A+ VL +L V + I ++ +AKG  R AG E  ++     
Sbjct: 1   AGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLI-LLGVAKGTTRKAGFETLYLNDSAH 59

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY-SPLDEINGIGPLR 567
              L    P L+ IQ++RDEAHRFAIT HR RR K    S L+ + G+GP R
Sbjct: 60  EFTLPGDSPALHLIQQIRDEAHRFAITGHRARRGKTRRTSTLEGVAGVGPPR 111


>gi|194433473|ref|ZP_03065751.1| excinuclease cho [Shigella dysenteriae 1012]
 gi|194418236|gb|EDX34327.1| excinuclease cho [Shigella dysenteriae 1012]
          Length = 295

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----ADMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|215486958|ref|YP_002329389.1| nucleotide excision repair endonuclease [Escherichia coli O127:H6
           str. E2348/69]
 gi|215265030|emb|CAS09417.1| endonuclease of nucleotide excision repair [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 295

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFATRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + +A + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HARRLRQALERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|161503590|ref|YP_001570702.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864937|gb|ABX21560.1| hypothetical protein SARI_01669 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 302

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 39  ELPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 94

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 95  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ SL     L          +R R C  F +KRC+G C G+ S + 
Sbjct: 151 LFGLFANRRAALQSLQSLADEQKLCYGLLGLEPLNRGRACFRFALKRCAGACCGQESPQA 210

Query: 180 YM 181
           + 
Sbjct: 211 HF 212


>gi|197250160|ref|YP_002146727.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197213863|gb|ACH51260.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 293

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  ELPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201

Query: 180 YM 181
           + 
Sbjct: 202 HF 203


>gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 528

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 11/202 (5%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P   GVY   D  G +LYVGK+ +++ R+ S+   ++   +   + +++ +I F 
Sbjct: 212 DIKKLPASAGVYYFYDANGALLYVGKSIHIRNRVMSHFSQDHSNPKDLQINNKLAHIDFE 271

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYK--HRDSSTIQ 118
            T +++ A + E+N IK L P +N  LR  K  + Y    D++    +        S   
Sbjct: 272 KTPSDLGAQIRESNQIKALYPLYNRRLRKTKKLYQYRCDEDRNGYQRIAIEAVELDSDSA 331

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLR--------SCADSVFRHRTRPCLLFQIKRCSGP 170
              FG F S     K I  L   +FL         S A +      +PC   Q+K+C G 
Sbjct: 332 DERFGLFRSPRQASKQIEKLADHYFLCHKLLGLESSTATTSVATNQKPCFRAQLKKCFGA 391

Query: 171 CTGEISSEKYMEFVHEAKKFLS 192
           C G  S E Y E V  A K   
Sbjct: 392 CHGAESPENYNERVSAALKTYQ 413


>gi|110641861|ref|YP_669591.1| nucleotide excision repair endonuclease [Escherichia coli 536]
 gi|191171622|ref|ZP_03033169.1| excinuclease cho [Escherichia coli F11]
 gi|110343453|gb|ABG69690.1| hypothetical protein YdjQ [Escherichia coli 536]
 gi|190907952|gb|EDV67544.1| excinuclease cho [Escherichia coli F11]
          Length = 295

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 94/254 (37%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + ++     L             R C    +KRC+G C G+ S + 
Sbjct: 142 LFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSHGRACFRSALKRCAGACCGKESHDD 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N      
Sbjct: 202 HALRLRQSLERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRAPAGFDHDGY 269


>gi|213622036|ref|ZP_03374819.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 280

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201

Query: 180 YM 181
           + 
Sbjct: 202 HF 203


>gi|16760586|ref|NP_456203.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141653|ref|NP_804995.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162967|ref|ZP_03348677.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|238910873|ref|ZP_04654710.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16502882|emb|CAD02045.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137281|gb|AAO68844.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|322655747|gb|EFY52049.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|323257183|gb|EGA40886.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
          Length = 302

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 39  EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 94

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 95  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 210

Query: 180 YM 181
           + 
Sbjct: 211 HF 212


>gi|213024849|ref|ZP_03339296.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 89

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 522 MRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKM 580
              P L+ IQ +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ 
Sbjct: 1   PDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQG 60

Query: 581 ISRSSPETLASIEGISKKIACKIY 604
           +  +S E +A + GIS+ +A KI+
Sbjct: 61  LRNASVEEIAKVPGISQGLAEKIF 84


>gi|194469267|ref|ZP_03075251.1| excinuclease cho [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194736134|ref|YP_002114328.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195873223|ref|ZP_02697225.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197301132|ref|ZP_02664035.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204927461|ref|ZP_03218662.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205358673|ref|ZP_02658284.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205360706|ref|ZP_02685847.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|213028192|ref|ZP_03342639.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213427492|ref|ZP_03360242.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213852611|ref|ZP_03382143.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|20178217|sp|Q8Z6G5|CHO_SALTI RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho;
           AltName: Full=UvrC homolog protein
 gi|194455631|gb|EDX44470.1| excinuclease cho [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194711636|gb|ACF90857.1| excinuclease cho [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195634227|gb|EDX52579.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197288257|gb|EDY27642.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204322803|gb|EDZ07999.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205332752|gb|EDZ19516.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205347602|gb|EDZ34233.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|322616697|gb|EFY13606.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620045|gb|EFY16918.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622355|gb|EFY19200.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627879|gb|EFY24669.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633023|gb|EFY29766.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636731|gb|EFY33434.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641243|gb|EFY37884.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645232|gb|EFY41761.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650174|gb|EFY46588.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322660073|gb|EFY56312.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665360|gb|EFY61548.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669653|gb|EFY65800.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673544|gb|EFY69646.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677470|gb|EFY73534.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679865|gb|EFY75904.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687337|gb|EFY83309.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192455|gb|EFZ77685.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198690|gb|EFZ83791.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204118|gb|EFZ89132.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208737|gb|EFZ93675.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210250|gb|EFZ95149.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217712|gb|EGA02427.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220267|gb|EGA04722.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223633|gb|EGA07945.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229515|gb|EGA13638.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232738|gb|EGA16834.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240223|gb|EGA24267.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242789|gb|EGA26810.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249105|gb|EGA33024.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323263414|gb|EGA46945.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267091|gb|EGA50576.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271585|gb|EGA55006.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 293

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201

Query: 180 YM 181
           + 
Sbjct: 202 HF 203


>gi|194448654|ref|YP_002045316.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205359344|ref|ZP_02669350.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194406958|gb|ACF67177.1| excinuclease cho [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205336710|gb|EDZ23474.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 293

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYSLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201

Query: 180 YM 181
           + 
Sbjct: 202 HF 203


>gi|326623563|gb|EGE29908.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 302

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 39  ELPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 94

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 95  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRSCFRFALKRCAGACCGQETPQA 210

Query: 180 YM 181
           + 
Sbjct: 211 HF 212


>gi|194443792|ref|YP_002040568.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194402455|gb|ACF62677.1| excinuclease cho [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 293

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  ELPAFPGVYVFYSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201

Query: 180 YM 181
           + 
Sbjct: 202 HF 203


>gi|198245824|ref|YP_002215816.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197940340|gb|ACH77673.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 293

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           ++P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  ELPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRSCFRFALKRCAGACCGQETPQA 201

Query: 180 YM 181
           + 
Sbjct: 202 HF 203


>gi|16764660|ref|NP_460275.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62179900|ref|YP_216317.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|197262254|ref|ZP_03162328.1| excinuclease cho [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|16419827|gb|AAL20234.1| putative nuclease subunit of the excinuclease complex [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|62127533|gb|AAX65236.1| putative nuclease subunit of the excinuclease complex [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|197240509|gb|EDY23129.1| excinuclease cho [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|261246518|emb|CBG24328.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993183|gb|ACY88068.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157846|emb|CBW17340.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|322714367|gb|EFZ05938.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323129580|gb|ADX17010.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988197|gb|AEF07180.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 302

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 39  EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 94

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 95  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 210

Query: 180 YM 181
           + 
Sbjct: 211 HF 212


>gi|188533988|ref|YP_001907785.1| nucleotide excision repair endonuclease [Erwinia tasmaniensis
           Et1/99]
 gi|188029030|emb|CAO96898.1| Excinuclease cho [Erwinia tasmaniensis Et1/99]
          Length = 289

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 9/183 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I F 
Sbjct: 28  LESLPKLPGVYVFHGESETMPLYIGKSVNIRSRVLSHLRTADE----ARMLRQATRISFI 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
            T  E+ ALLLEA MIK  +P FN  LR ++    + IT     P +   +D   +    
Sbjct: 84  PTAGELGALLLEAQMIKLQQPLFNKRLRKNRQLCSLQITAGT--PQVVYAKDVDFSSTAG 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEK 179
            +G +A   A  +T+  +     L      + + R    C  F +KRC+G C G  S  +
Sbjct: 142 LYGLYAHRRAALETLQKIADEQRLCYPLLGLEKLRSGGACFRFALKRCAGACCGNESEHE 201

Query: 180 YME 182
           + +
Sbjct: 202 HQQ 204


>gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16]
 gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16]
          Length = 528

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 5/175 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + E +P  PGVY         LY+GK+ +L++RI ++   +    +   +   +  + + 
Sbjct: 217 ALEDVPAAPGVYIFYGDQDVPLYIGKSVHLRQRIGAHFSGDYRYGKDMRLARLVRRVEWR 276

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGS 120
            T  E  ALLLEA ++K ++P  N LLR +   + +  +  +  +P L   RD+   +  
Sbjct: 277 ETGGETGALLLEARLVKAMQPVHNQLLRRNARLYAW-ELPQQLPVPRLRSDRDTDFCRHR 335

Query: 121 -YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCT 172
             FG F S  A E  + +L +   L     S+ +   R  PC   Q+ RC+G C 
Sbjct: 336 DLFGVFGSRGAAEARLRALAQEHGLCLATLSLEKTTRRGSPCFARQVHRCAGACV 390


>gi|283785035|ref|YP_003364900.1| excinuclease Cho [Citrobacter rodentium ICC168]
 gi|282948489|emb|CBG88078.1| excinuclease Cho [Citrobacter rodentium ICC168]
          Length = 295

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I + 
Sbjct: 28  LEALPSVPGVYLFHGESEAMPLYIGKSVNIRSRVLSHLRTADE----AAMLRQSRRISWI 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-S 120
            T  E+ ALLLEA +IK  +P FN  LR ++    + + +      +   R+       +
Sbjct: 84  CTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALRLANGQV--EVVYAREVDFSHAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + +L     L           R R C    +KRC+G C G  S + 
Sbjct: 142 LFGLFANRRAALQALQTLADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGRESPDD 201

Query: 180 Y 180
           +
Sbjct: 202 H 202


>gi|161614288|ref|YP_001588253.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205357735|ref|ZP_02572972.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|20178223|sp|Q8ZPU6|CHO_SALTY RecName: Full=Excinuclease cho; AltName: Full=Endonuclease cho;
           AltName: Full=UvrC homolog protein
 gi|161363652|gb|ABX67420.1| hypothetical protein SPAB_02033 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205329729|gb|EDZ16493.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|312912295|dbj|BAJ36269.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223937|gb|EFX49000.1| Excinuclease cho excinuclease ABC alternative C subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
          Length = 293

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201

Query: 180 YM 181
           + 
Sbjct: 202 HF 203


>gi|291085463|ref|ZP_06571074.1| excinuclease cho [Citrobacter youngae ATCC 29220]
 gi|291071063|gb|EFE09172.1| excinuclease cho [Citrobacter youngae ATCC 29220]
          Length = 262

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 15/247 (6%)

Query: 10  PGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVE 68
           PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ 
Sbjct: 2   PGVYLFHSESDTLPLYIGKSVNIRSRVLSHLRTTDE----AAMLRQSKRISWICTAGEIG 57

Query: 69  ALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFGPFAS 127
           ALLLEA +IK  +P FN  LR ++    + +T   +   +   RD       + FG FA+
Sbjct: 58  ALLLEARLIKEQQPLFNKRLRRNRQLCALQLT--EQTVQVVYSRDIDFSHAPNLFGLFAN 115

Query: 128 VDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
             A  +T+ SL     L           R R C    +KRC+G C G+ S + +   + E
Sbjct: 116 RRAALQTLQSLADEQQLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESPQAHHARLLE 175

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246
           A + +          I      A  +   E    H           +  D         +
Sbjct: 176 ALERVRVICWPWNSAI------ALQETRAEMTQYHIINNWLWLGAVSTLDEAATLARMPA 229

Query: 247 LYHNKNL 253
            + +   
Sbjct: 230 GFDHDGY 236


>gi|168702411|ref|ZP_02734688.1| exinuclease ABC subunit C [Gemmata obscuriglobus UQM 2246]
          Length = 404

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 131/316 (41%), Gaps = 26/316 (8%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + +  P+ PGVY MLD  GR++YVGKA NL+ R+  Y   N+   +   +I Q   + + 
Sbjct: 51  AKKNAPKVPGVYGMLDSRGRLIYVGKAKNLRARLLCYFRENSRDPKAGKIIEQTKRLVWE 110

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFP------YILITDKHKIPALYKHRDSS 115
               E+ ALL E  +I+RL+PR+N+L       P      YI +        +Y     +
Sbjct: 111 QCGDELAALLRELELIQRLRPRYNVL-----GVPGFQRHHYICVGKS-PGAHVYVTAAPT 164

Query: 116 TIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADS-----------VFRHRTRPCLLFQI 164
             +   +GPF      E     L   F LR C  +               R+  CL F++
Sbjct: 165 GKEQGVYGPFVKRHRSEDAARRLNDWFKLRDCPQTVPLTFAEQGALFDPARSAKCLRFEL 224

Query: 165 KRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDR 224
             C+GPC G  + + Y      AK FL G N ++ + +   M  A  +  +E A   RD+
Sbjct: 225 GTCAGPCVGACTRQDYAAGARAAKAFLDGRNRSILQTLQEQMGVAAEELQFEKAASLRDK 284

Query: 225 LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQ 284
           L AL  + +  + +    D  S  +       Q     +          +    ++ +A 
Sbjct: 285 LHALQWLDDRLNLLRTARDRNSFVYPLEGTDGQ---TRWYLIHRGEVQAVSFPPDAESAT 341

Query: 285 ILSYFLRQFYTDKPCP 300
            ++  L   + D+P P
Sbjct: 342 RVASLLGATFADRPAP 357


>gi|207857182|ref|YP_002243833.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206708985|emb|CAR33315.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 302

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 39  EAPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 94

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 95  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 210

Query: 180 YM 181
           + 
Sbjct: 211 HF 212


>gi|200389394|ref|ZP_03216005.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199601839|gb|EDZ00385.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 293

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201

Query: 180 YM 181
           + 
Sbjct: 202 HF 203


>gi|168821953|ref|ZP_02833953.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205341606|gb|EDZ28370.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 302

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 39  EAPALPGVYIFHSESETLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 94

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 95  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 210

Query: 180 YM 181
           + 
Sbjct: 211 HF 212


>gi|304397600|ref|ZP_07379477.1| Excinuclease ABC C subunit domain protein [Pantoea sp. aB]
 gi|304354772|gb|EFM19142.1| Excinuclease ABC C subunit domain protein [Pantoea sp. aB]
          Length = 313

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 16/220 (7%)

Query: 6   MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY     +    LY+GK+ NL+ R+ S+  + +       M+ Q   + +  T 
Sbjct: 35  LPNHPGVYTFHGESESLPLYIGKSVNLRSRVMSHFRTPDE----AKMLRQSRRVSWIPTA 90

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFG 123
            ++ ALLLEA MIK  +P FN  LR ++    + ITD    P +   +D    Q  + FG
Sbjct: 91  GDLGALLLEAQMIKTQQPLFNKRLRKNRQLCSLQITDGK--PNVVYAKDLDFSQSPNLFG 148

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
            + S  A  + +  L   + L      +      R C    ++RC+G C G+     + +
Sbjct: 149 LYRSRFAALERLKQLADEYQLCHGLLGLEALSAGRGCFRSALRRCAGACCGKEPVSDHQD 208

Query: 183 -------FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215
                   V        G    ++E              Y
Sbjct: 209 RLLEALENVRVFCWPWQGAVGLVEEGKEMTQIHVIDHWFY 248


>gi|300716442|ref|YP_003741245.1| Excinuclease cho [Erwinia billingiae Eb661]
 gi|299062278|emb|CAX59395.1| Excinuclease cho [Erwinia billingiae Eb661]
          Length = 287

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 16/243 (6%)

Query: 6   MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY     +    LY+GK+ NL+ R+ S+  + +       M+ Q   + F  T 
Sbjct: 31  LPSLPGVYVFHGESETMPLYIGKSVNLRSRVMSHFRTADE----AKMLRQAKRVTFIPTA 86

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFG 123
            E+ ALLLEA MIK  +P FN  LR ++    + +  +   P +   +D   +     FG
Sbjct: 87  GELGALLLEAQMIKVQQPLFNKRLRKNRQLCSLHMAGEK--PTVVYAKDLDFSHTPDLFG 144

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
            +AS  A  + +  +     L      + +  + R C    + RC+G C G+ S +++ +
Sbjct: 145 LYASRHAALEKLQKIADEQRLCLGVLGLEKLSKGRACFRASLGRCAGACCGKESLDEHQQ 204

Query: 183 FVHEA-------KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHN 235
            +  A            G    +++ I            Y  ++    + + L+      
Sbjct: 205 RLIAALERVRVQCWPWQGAVGVVEQGINHQQIHIINNWFYLGSVEDLAQASELTTTPQGF 264

Query: 236 DSI 238
           DS 
Sbjct: 265 DSD 267


>gi|320086209|emb|CBY95983.1| UvrABC system protein C Protein uvrC; Excinuclease ABC subunit C
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 293

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  EAPALPGVYIFHSESETLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201

Query: 180 YM 181
           + 
Sbjct: 202 HF 203


>gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 469

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 55/86 (63%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E++P  PG+Y   +  G+++YVGKA N++KR+ S+   NN ++R    + +I +I F  +
Sbjct: 203 ERLPAKPGIYIFKNNKGKIIYVGKAINIRKRVLSHFTGNNTSNRRQLFLKEIFDIDFEES 262

Query: 64  CTEVEALLLEANMIKRLKPRFNILLR 89
            TE+ ALL+E  +IK+  P +N  L+
Sbjct: 263 GTELMALLMECQLIKKHWPAYNRALK 288


>gi|325983091|ref|YP_004295493.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
 gi|325532610|gb|ADZ27331.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
          Length = 463

 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 6/196 (3%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +P   GVY     +  VLYVGK+ +L+ R+ ++   ++ + +   +  +I  +  
Sbjct: 195 LDIDTLPATCGVYLFHGDS-AVLYVGKSVSLRSRVFNHFQGDHRSTKEMRIAQEIKQVEH 253

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI-PALYKHRDSSTI-- 117
            +T  E+ ALLLE+ +IK  +P  N  LR ++      ++      P +    DS     
Sbjct: 254 RITGGELGALLLESRLIKDHQPIHNRQLRRERQLCAWQVSSDPNSKPLVTLINDSDIDWR 313

Query: 118 -QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
              + +G F +     + ++ L   + L   A       T  C   Q+K C G C G  S
Sbjct: 314 TANNIYGTFKTKRQAVEVLSKLADEYGLCDKALG-LEKGTGVCFAHQLKHCKGLCAGLES 372

Query: 177 SEKYMEFVHEAKKFLS 192
           +E +   +  A     
Sbjct: 373 TESHWLRLLTALSQYR 388


>gi|270261302|ref|ZP_06189575.1| excinuclease cho [Serratia odorifera 4Rx13]
 gi|270044786|gb|EFA17877.1| excinuclease cho [Serratia odorifera 4Rx13]
          Length = 283

 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 20/245 (8%)

Query: 6   MPECPGVYQMLD-IAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +P+ PGVY          LY+GK+ N++ R+ ++  + +       ++ Q   I F  T 
Sbjct: 26  LPKSPGVYLFHGLSDSMPLYIGKSVNIRSRVMAHFRTQDE----ARLLRQTQRISFHETA 81

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG---SY 121
            E+ ALLLEA +IK+ +P FN  LR  K    + +        +              + 
Sbjct: 82  GELGALLLEAQLIKQQQPLFNKRLRRSKQLCSLHLDGG----QVSIAHAKDIDFAATPNL 137

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKY 180
            G FA+  A  + +  +     L      + +    R C  + +++C+G C G  S  ++
Sbjct: 138 HGLFANRTAALEKLRIIADEQRLCYGKLGIDKLPAGRGCFRYSLRKCAGVCCGVESDLQH 197

Query: 181 M-------EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
                   +         +G     ++              Y  ++    +  +L    +
Sbjct: 198 DQRLAAALQQTRINTWPYAGRVAMEEQGAFLRQYHVIHNWFYLGSVGALQQADSLQRTAS 257

Query: 234 HNDSI 238
           H DS 
Sbjct: 258 HFDSD 262


>gi|56413705|ref|YP_150780.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362628|ref|YP_002142265.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127962|gb|AAV77468.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094105|emb|CAR59605.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 293

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  EAPALPGVYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201

Query: 180 YM 181
           + 
Sbjct: 202 HF 203


>gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
 gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 530

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 89/195 (45%), Gaps = 5/195 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + + +P+  GVY         LY+GK+ +L++RI ++   +    +   +   +  + + 
Sbjct: 219 ALDDVPDTAGVYLFYGDNDAPLYIGKSVHLRQRIGAHFSGDYRLGKDMRLARLVRRVEWR 278

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSS-TIQG 119
            T  E+ ALLLEA+++K ++P  N +LR     + +  +  +  +P L    D+  + +G
Sbjct: 279 ETGGEIGALLLEASLVKTMQPLHNQMLRGSARLYTW-ELPPELPVPRLRSDADTDFSRRG 337

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFR--HRTRPCLLFQIKRCSGPCTGEISS 177
           + +G FAS  A +  +  L     L     ++ +      PC   Q+ RC G C GE +S
Sbjct: 338 NLYGAFASRGAAQAWLRRLADEHRLCQATLTLEKTARAGNPCFARQLHRCEGACVGEEAS 397

Query: 178 EKYMEFVHEAKKFLS 192
             +   +  A     
Sbjct: 398 PSHRARIATAMAEAR 412


>gi|308186631|ref|YP_003930762.1| UvrABC system protein C [Pantoea vagans C9-1]
 gi|308057141|gb|ADO09313.1| UvrABC system protein C [Pantoea vagans C9-1]
          Length = 286

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 16/220 (7%)

Query: 6   MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY     +    LY+GK+ NL+ R+ S+  + +       M+ Q   + +  T 
Sbjct: 31  LPNHPGVYTFHGESESLPLYIGKSVNLRSRVMSHFRTPDE----AKMLRQSRRVSWIPTA 86

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQG-SYFG 123
            ++ ALLLEA MIK  +P FN  LR ++    + ITD    P +   +D    Q  + FG
Sbjct: 87  GDLGALLLEAQMIKTQQPLFNKRLRKNRQLCSLQITDGK--PNVVYAKDLDFSQSPNLFG 144

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
            + S  A  + +  L   + L      +      R C    ++RC+G C G+     + +
Sbjct: 145 LYRSRFAALERLKQLANEYQLCHGLLGLEALSAGRGCFRSALRRCAGACCGKEPVSDHQD 204

Query: 183 -------FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215
                   V        G    ++E              Y
Sbjct: 205 RLLEALENVRVFCWPWQGAVGLVEEGKEMTQIHVIDHWFY 244


>gi|205357233|ref|ZP_02346090.2| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322967|gb|EDZ10806.1| GIY-YIG catalytic domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 293

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----ATMLRQARRIGWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +    R R C  F +KRC+G C G+ + + 
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQA 201

Query: 180 YM 181
           + 
Sbjct: 202 HF 203


>gi|110805451|ref|YP_688971.1| nucleotide excision repair endonuclease [Shigella flexneri 5 str.
           8401]
 gi|110614999|gb|ABF03666.1| putative excinuclease subunit [Shigella flexneri 5 str. 8401]
          Length = 295

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 96/254 (37%), Gaps = 19/254 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+  LLLEA +IK  +P FN  LR ++    + + +K     +               
Sbjct: 86  AGEIGVLLLEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  + + S+     L           R R C    +KRC+G C G+ S E+
Sbjct: 142 LFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           +   + ++ + L                 A  ++  E    H  +        N  +   
Sbjct: 202 HALRLRQSLERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEAT 255

Query: 240 NRMDCFSLYHNKNL 253
             +   + + +   
Sbjct: 256 TLIRTPAGFDHDGY 269


>gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21]
 gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21]
          Length = 463

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 26/203 (12%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E++P+ PGVY   D  G+V+YVGKA N++KR+ ++    N   +  + +  I +I F   
Sbjct: 192 ERLPQTPGVYYFKDQKGKVVYVGKAKNIKKRVSAHFSGQNPNPQRQNFMRSIYDIDFVSC 251

Query: 64  CTEVEALLLEANMIKRLKPRFNILLR------------DDKSFPYILITDKHKIPALYKH 111
            TE+ A LLEA  IKRL P  N  L+            D K +  + I    +       
Sbjct: 252 GTELIAFLLEAVEIKRLWPENNRALKRFEPKYGLYSYEDQKGYIRLAIDKHQRFQQA--- 308

Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
                        F +V      +N L +   L     +  +     CL      C G C
Sbjct: 309 ----------ICSFGNVIEAYNLVNRLIQEHRLC-AKLNGIQKVQGACLNHINGGCLGAC 357

Query: 172 TGEISSEKYMEFVHEAKKFLSGG 194
            GE + + Y E ++ A   L+  
Sbjct: 358 IGEENKDNYNERMYTALDNLAKM 380


>gi|332291057|ref|YP_004429666.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169143|gb|AEE18398.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 458

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P   GVY M ++ G ++Y+GK+ N++KR+  +    N   +   +  Q+  + +  T 
Sbjct: 192 SVPSETGVYFMHNVNGTIIYIGKSKNMKKRLTQHFT--NDNRKSKQIQDQVETVTYQTTG 249

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDK------SFPYILITDKHKIPALYKHRDSSTIQ 118
           TE+ ALL E   IKR KP+FN  LR  K       +     TD      L   R     +
Sbjct: 250 TELIALLKENAEIKRHKPKFNRALRRTKFKVQLTHY-----TDSEGYIHLKTERADGRKE 304

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
                 +++  + +  +  +  ++ L     +++  ++  C  + IK+C+G C G  S E
Sbjct: 305 S--ITTYSNSMSAKANLERIIDSYDLCQ-NKTLYNEKSGNCFNYTIKKCNGACIGGESPE 361

Query: 179 KYME 182
            Y +
Sbjct: 362 SYNQ 365


>gi|310658034|ref|YP_003935755.1| excinuclease ABC subunit C domain-containing protein [Clostridium
           sticklandii DSM 519]
 gi|308824812|emb|CBH20850.1| Excinuclease ABC C subunit domain protein [Clostridium sticklandii]
          Length = 302

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 4/138 (2%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M D    V+Y+GK+ NL+ R+KSY      + +I  M+  + ++ + +T T +EA +LE 
Sbjct: 1   MKDKNDGVVYIGKSKNLKARVKSYFTKGEKSEKIIRMVHNLKDVDWIITDTHMEAQILEC 60

Query: 75  NMIKRLKPRFNILLRDDKSFPYILI-TDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
            +IK+LKP +N+  ++ +++ Y+ + TD  K P L             +GP+     V +
Sbjct: 61  ALIKKLKPIYNVQFKNHQNYFYLNVGTDSRKKPLLIYSEKQPFDS---YGPYRGRSFVNQ 117

Query: 134 TINSLQRTFFLRSCADSV 151
            +  L+  + +   +DS 
Sbjct: 118 LLKQLENIYPITKASDSY 135


>gi|312172246|emb|CBX80503.1| putative excinuclease cho [Erwinia amylovora ATCC BAA-2158]
          Length = 289

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 9/214 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I F 
Sbjct: 28  LEALPKLPGVYVFHGDSETMPLYIGKSVNIRSRVLSHLRTADE----ARMLRQATRISFI 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
            T  E+ ALLLEA MIK  +P FN  LR ++    + I      P +   ++   +    
Sbjct: 84  TTAGELGALLLEARMIKLQQPLFNKRLRKNRQLCALQIAAGS--PQVVYAKEVDFSTTSG 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEK 179
            +G +A+  A  +T+  +     L      + + R+   C  F + RC+G C G  +   
Sbjct: 142 LYGLYANRRAALETLQKIADEQRLCYYLLGLEKMRSGNACFRFALNRCAGACCGTETRAA 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKE 213
           + + +  A + +        E +A    +A   +
Sbjct: 202 HQQRLLSALEAVRVRCWPWPEAVAVLEQRAGQTQ 235


>gi|292488115|ref|YP_003530992.1| putative excinuclease cho [Erwinia amylovora CFBP1430]
 gi|292899326|ref|YP_003538695.1| excinuclease Cho [Erwinia amylovora ATCC 49946]
 gi|291199174|emb|CBJ46288.1| excinuclease Cho [Erwinia amylovora ATCC 49946]
 gi|291553539|emb|CBA20584.1| putative excinuclease cho [Erwinia amylovora CFBP1430]
          Length = 289

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 9/214 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I F 
Sbjct: 28  LEALPKLPGVYVFHGDSETMPLYIGKSVNIRSRVLSHLRTADE----ARMLRQATRISFI 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
            T  E+ ALLLEA MIK  +P FN  LR ++    + I      P +   +D   +    
Sbjct: 84  TTAGELGALLLEARMIKLQQPLFNKRLRKNRQLCALQIAAGS--PQVVYAKDVDFSTTSG 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEK 179
            +G +A+  A  +T+  +     L      + + R+   C  F + RC+G C G  +   
Sbjct: 142 LYGLYANRRAALETLQKIADEQRLCYYLLGLEKMRSGNACFRFALNRCAGACCGTETRAA 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKE 213
           + + +  A + +        + +A    +A   +
Sbjct: 202 HQQRLLSALEAVRVRCWPWPDAVAVLEQRAGQTQ 235


>gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366]
 gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366]
          Length = 456

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 4/192 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P+ PGVY   D  G V+YVGKA N+ KR+ S+   NN   +    +  I++I F 
Sbjct: 191 QIDKLPQVPGVYYFRDQKGIVVYVGKAKNILKRVCSHFTGNNSGKQRQEFLKNIHSIDFE 250

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRD-DKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           +  TE+ A +LEA  IKRL P  N  L+  ++ +   +  D+     L        +   
Sbjct: 251 ICGTELMAFILEAAEIKRLWPENNRALKRYEQKYGLYVFEDQKGYMRLGIDTYKKRVPVL 310

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y   F S+      +  L +   L      + ++R   C      +CSG C G  S+  Y
Sbjct: 311 Y--SFNSLVEGHNLLRRLIKEHKLCEKLCFIQKNRD-ACTGHNEGKCSGACLGIESAASY 367

Query: 181 MEFVHEAKKFLS 192
              V  A ++LS
Sbjct: 368 NVRVKYAIEYLS 379


>gi|1354226|gb|AAB01922.1| 24 kDa protein [Mycoplasma hyopneumoniae]
          Length = 217

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 3/128 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P   GVY+       +LYVGKA NL+ R+  Y     ++++   +I +   I++ +   
Sbjct: 2   LPNQVGVYRFYHEKNTLLYVGKAKNLKSRMNQYAKGATNSYKTEVLIRKTKEIKYDILQN 61

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQGSYF 122
           E EAL+LE  +I + +P +NI L+DD+++PYI +  + K+         R   +    ++
Sbjct: 62  ETEALILEKKIISKFQPIYNIKLKDDQNYPYIKLELEKKLNIELVYKISRSKRSKNIFFY 121

Query: 123 GPFASVDA 130
           GPF +  +
Sbjct: 122 GPFLNKSS 129


>gi|86131767|ref|ZP_01050364.1| exonuclease family protein [Dokdonia donghaensis MED134]
 gi|85817589|gb|EAQ38763.1| exonuclease family protein [Dokdonia donghaensis MED134]
          Length = 400

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 101/262 (38%), Gaps = 6/262 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P   GVY M ++   ++Y+GK+ N++KR+  +    N   +   +  ++ ++ +  T
Sbjct: 132 KSVPSETGVYFMHNVNETIIYIGKSKNMKKRLTQHFT--NDNRKSKKIQDEVESVTYIQT 189

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYI-LITDKHKIPALYKHRDSSTIQGSYF 122
            +E+ ALL E + IK  KP++N  LR  K    +   TD+     L   R     +    
Sbjct: 190 GSELLALLKENDAIKHYKPKYNRALRRTKFKVQLTHFTDQQGYIHLKTERADGRKES--I 247

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
             +++  + + ++  +   + L     + F  ++  C  + I++C+G C  +     Y +
Sbjct: 248 TTYSNTMSAKSSLERIIAAYNLCM-NKTQFNSKSGSCFNYGIEKCNGACVEKEDPASYNK 306

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V +     S  N ++        +        E+           ++  +  D +   +
Sbjct: 307 RVQQFIDKHSYKNKSMIITDRGRKSNERSFVLIENGKFKGIGFYDHNNDISDLDYLNTII 366

Query: 243 DCFSLYHNKNLACIQTCFFHFG 264
           +  S   +              
Sbjct: 367 EPMSDNRDAKHIIQTYTRSRKR 388


>gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
 gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
          Length = 456

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 4/194 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P   GVY   D  G+V+YVGKA N++KR+ S+   NN   +    +  I  + F 
Sbjct: 191 QVDRLPSGSGVYYFKDQKGKVIYVGKAKNIKKRVCSHFSGNNSGRQRQEFLKNIYMVDFE 250

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRD-DKSFPYILITDKHKIPALYKHRDSSTIQGS 120
           V  TE+ A +LEA  IK   P  N  ++  ++ +      D+     L   +    +   
Sbjct: 251 VCGTELMAFILEAAEIKHYWPDNNRAMKRYEQKYAIFTFEDQRGYMRLGIDKYRHNVPAL 310

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y   F ++     T+ +L +   L      + ++R   C       CSG C G+ S+  Y
Sbjct: 311 Y--SFNTILEGHNTLKTLIKEHLLCEKLCYIQKNRI-ACTAQAEGNCSGACIGKESAASY 367

Query: 181 MEFVHEAKKFLSGG 194
              V  A K L   
Sbjct: 368 NVRVKFAIKQLKSM 381


>gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 469

 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 54/86 (62%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E++P  PG+Y   +  G+++YVGKA N++KR+ S+   NN ++R    + +I +I F  +
Sbjct: 203 ERLPAKPGIYIFKNNKGKIIYVGKAINIRKRVLSHFTGNNTSNRRQLFLKEIFDIDFEES 262

Query: 64  CTEVEALLLEANMIKRLKPRFNILLR 89
            TE+ ALL+E  +IK+  P  N  L+
Sbjct: 263 GTELMALLMECQLIKKHWPAHNRALK 288


>gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 460

 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +Q P   GVY M D  G +LY+GK+ N++KR+  +    N   +   M  ++ +I    T
Sbjct: 192 KQAPSETGVYYMHDTHGNILYIGKSKNIKKRLTQHFT--NDNRKSKEMQLKVTSISIEKT 249

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSYF 122
            +E+ ALL E + IKR KPRFN  L+    ++      D+     L   +  +  +    
Sbjct: 250 GSELLALLEENDQIKRHKPRFNRALKRSIFNYQLGSFVDEDGYINLKIEKADARKKA--I 307

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
             F++  + +  + S    F L       F   T  C  + IK C G CT EI+ E+Y 
Sbjct: 308 TTFSNYQSAKNNVASYIEKFNLCQRLSG-FEKSTGACFNYNIKECDGACTQEIAPEEYN 365


>gi|89890222|ref|ZP_01201732.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BBFL7]
 gi|89517137|gb|EAS19794.1| DNA  polymerase III, epsilon subunit [Flavobacteria bacterium
           BBFL7]
          Length = 466

 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 86/199 (43%), Gaps = 8/199 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +Q+PE PGVY   D   +++Y+GKA N++KR+ S+ +S   T +   M  +I++I   
Sbjct: 197 QFDQLPETPGVYLFKDQGHKIIYIGKAINIRKRVLSHFYS--KTSKSYLMCQEIHHIDHI 254

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGS 120
           VT  E+ ALL E+++IK+  P+FN++ +  K ++  +   ++  I         S     
Sbjct: 255 VTGNELVALLQESDLIKKHYPKFNVVQKKPKPAYQILHYKNQLGIIQFAVGLVKSYD--- 311

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSV-FRHRTRPCLLFQIKRCSGPCTGEISSEK 179
            +      +         Q       C     F+ +      +++K C G C  E     
Sbjct: 312 -YSVVTHYNRAHAVEQLEQLCADYNLCPRYCSFKTKDDCTSHYKLKNCKGVCKKEELVSL 370

Query: 180 YMEFVHEAKKFLSGGNHNL 198
           Y     +A   L   N N 
Sbjct: 371 YNLRAQQALDSLHHQNPNY 389


>gi|152061172|dbj|BAF73630.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci]
          Length = 274

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 4/176 (2%)

Query: 89  RDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCA 148
           RDDKS+PY+ ++D    P L  HR +   +G YFGP+ S  A+ ++++ LQ+TF +R C 
Sbjct: 96  RDDKSYPYVFLSDG-NYPRLSIHRGTKKAKGRYFGPYPSAGAIRESLSLLQKTFQVRQCE 154

Query: 149 DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQ 208
           DS F++RTRPCL +QIKRC GPC G +  E Y E V  +  FL G ++ L +++  +M +
Sbjct: 155 DSYFKNRTRPCLQYQIKRCKGPCVGLVEPEVYAEDVRHSVMFLEGRSNALSDELNASMEK 214

Query: 209 ATLKEDYESAIIHRDR---LAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFF 261
           A +  D+E A   RD    +A     Q   D     +D  + + N   AC+     
Sbjct: 215 AAMALDFERAAELRDTGRLVATAYQDQQSMDGGTGDVDVVAAFVNPGGACVHLIQR 270


>gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87]
 gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87]
          Length = 457

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 99/262 (37%), Gaps = 21/262 (8%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P   G+Y + D  G ++Y+GK+ N++KRI  +  +++   R   M  ++ ++ +  
Sbjct: 190 LDDLPAITGIYYLHDEDGEIIYIGKSKNIKKRINQHFTNDH--ARAREMQKEVASVSYES 247

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKS------FPYILITDKHKIPALYKHRDSST 116
           T  E+ ALL E   IK  KP++N  L+  K       + Y   TDK     L   +  +T
Sbjct: 248 TGNELIALLRENQEIKNNKPKYNRALK--KHIFTHGLYHY---TDKDGYINLKISKARAT 302

Query: 117 IQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEIS 176
                   F+S+ + + ++      + L +            C  + IK C G C G  S
Sbjct: 303 KNC--ITTFSSLRSAKSSLARWIEEYELCARISGEHIGSGS-CFNYTIKSCHGACIGHES 359

Query: 177 SEKYMEFVHEAKKFLSGGNHNL-----KEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231
           +E Y   V +  +  S  N N+        +            ++    +          
Sbjct: 360 TEDYNARVMQLIEKYSYINQNMLVIDRGRDVDEKSALLIEAGKFKGVGYYNLNHQINKLD 419

Query: 232 QNHNDSIYNRMDCFSLYHNKNL 253
              +       D  + +  ++ 
Sbjct: 420 IIRSIITPMTNDRDAQHIIQSY 441


>gi|259908591|ref|YP_002648947.1| nucleotide excision repair endonuclease [Erwinia pyrifoliae Ep1/96]
 gi|224964213|emb|CAX55720.1| Excinuclease cho [Erwinia pyrifoliae Ep1/96]
 gi|283478561|emb|CAY74477.1| putative excinuclease cho [Erwinia pyrifoliae DSM 12163]
 gi|310767508|gb|ADP12458.1| nucleotide excision repair endonuclease [Erwinia sp. Ejp617]
          Length = 289

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 101/254 (39%), Gaps = 15/254 (5%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I F 
Sbjct: 28  LEALPKLPGVYVFHGDSETMPLYIGKSVNIRSRVLSHLRTADE----ARMLRQATRISFM 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
            T  E+ ALLLEA MIK  +P FN  LR ++    + I      P +   +D   +    
Sbjct: 84  TTAGELGALLLEARMIKLQQPLFNKRLRKNRQLCALQI--AEGSPLVVYAKDVDFSSTSG 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTR-PCLLFQIKRCSGPCTGEISSEK 179
            +G +A+  A  +T+  +     L      + + R+   C  F + RC+G C G+ +  +
Sbjct: 142 LYGLYANRRAALETLQKIADEQRLCYYLLGLEKMRSGNACFRFALNRCAGACCGKETRAE 201

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY 239
           + + +  A + +        + +      A L++       H           +  +   
Sbjct: 202 HQQRLLSALEAVRLRCWPWPDAV------AVLEQRTGQTQYHIINNWLYLGSVSKLEEAA 255

Query: 240 NRMDCFSLYHNKNL 253
                   + +   
Sbjct: 256 GLCSTTPGFDSDGY 269


>gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 447

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P  PG+Y   +  G+++Y+GKA +L+KR+ S+ +S   T +   M  +  +I F ++ 
Sbjct: 192 KIPNTPGIYYFKNKKGKIIYIGKAVDLKKRVLSHFYS--KTQKSLDMCRETADIDFELSG 249

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDD-KSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
           +E+ ALL+E   IK+  P +N L +   K++     TD+  I  ++   +S     +   
Sbjct: 250 SELVALLMEDAAIKQHYPEYNQLAKRTLKNYAVFSYTDRKGI--IHLAYNSVKNSPNPLK 307

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
            F++V      +  L   F L        +   + C   +I  C+G C    + E+Y   
Sbjct: 308 IFSNVRQCRAYVEELCFLFNLCP-KYCHLQEGVQACNHHKISACNGICRQNETPEEYNLR 366

Query: 184 VHEAKKFLSG 193
           V +A + +  
Sbjct: 367 VDKAIQHIKD 376


>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
 gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
          Length = 488

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 4/217 (1%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE  G+Y+  D  G +LY+GK+ N+++R+ S+   ++   +   +  Q+++I F 
Sbjct: 199 DIDLLPEAAGIYRFYDANGGLLYIGKSVNIRERVLSHFGQDHQHGKELDISQQLHHITFQ 258

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILL-RDDKSFPYILITDKHKIPALYK---HRDSSTI 117
            T ++  A LLE   IK   PRFN    +  K +   L TDK     L            
Sbjct: 259 QTPSDFGAQLLENTEIKHYSPRFNRRQTKTKKLYQLTLTTDKQGYHHLKTEVADMTEINT 318

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
               +G F S    EK +  L  T  L      + + +   C  +Q+K+C G C G+ S+
Sbjct: 319 ITQRYGLFRSRKQAEKKMLELIDTHRLCQKLCGIEKSQRGACFGYQLKKCRGACCGDESA 378

Query: 178 EKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214
           E Y   +  A   L          I    +      D
Sbjct: 379 ETYNLRLQLALAQLKNQQWPWSGPIVVEEHPVHDDWD 415


>gi|205352966|ref|YP_002226767.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272747|emb|CAR37663.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628040|gb|EGE34383.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 302

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 13/182 (7%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PG Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 39  EAPALPGAYVFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 94

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 95  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 150

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG FA+  A  +++ +L     L      +      R C  F +KRC+G C G+ + + 
Sbjct: 151 LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSHGRACFRFALKRCAGACCGQETPQA 210

Query: 180 YM 181
           + 
Sbjct: 211 HF 212


>gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 552

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 24/232 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PG+YQ    A +VLYVG A +L++R++SY  +     ++  M+    ++R   
Sbjct: 220 ADDLPSSPGIYQFRSAADQVLYVGSAVDLRRRVRSYFTAAEKRSKVAQMLDTTVSVRHIA 279

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKI---PALYKHRD-SSTIQ 118
           T T +EA + E  MI  L P  N   R  +  P++ +T        P L       +   
Sbjct: 280 TPTLIEARVRELRMIAELDPPVNRRSRAPRRQPWLHLTGGTGPGVEPRLALTTVLPTEEA 339

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G   GPFAS    ++ + + +    L                    +R  G     + ++
Sbjct: 340 GHAIGPFASRSRGQEALRAAESVLRL--------------------RRWDGHELRRVRTD 379

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
                  EA   LSG    +   +   +   +  E YE A    DRL  L  
Sbjct: 380 DAPAEPEEALACLSGTVDLVAAPLLERIATLSRAERYEEAGTWTDRLRCLLR 431


>gi|297171306|gb|ADI22311.1| nuclease subunit of the excinuclease complex [uncultured
           actinobacterium HF0500_01C15]
          Length = 149

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 7/153 (4%)

Query: 446 EENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSA 505
           +E +     +Q+       D+ ++DGG  QL  A        + + +++ ++AK  +   
Sbjct: 2   KEAVERXFXRQQXEGNPLADLTVVDGGXAQLXXAVAAXDDXGISD-VSVAALAKKRE--- 57

Query: 506 GMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIG 564
             E     + E++  +  +  L+ +QRJ  EAHRFA+  +RK R +      L EI GIG
Sbjct: 58  --EVXXPGQRESVHXDRXNRALHLLQRJXXEAHRFALRYNRKLRSRRTIRXELGEIPGIG 115

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           P R+ +JL+ FG+ + +  +S E +  + G S+
Sbjct: 116 PHRQTVJLRRFGSXQGVREASKEDIXRVPGFSE 148


>gi|293396618|ref|ZP_06640894.1| excinuclease cho [Serratia odorifera DSM 4582]
 gi|291420882|gb|EFE94135.1| excinuclease cho [Serratia odorifera DSM 4582]
          Length = 283

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 17/227 (7%)

Query: 5   QMPECPGVYQMLDI-AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P+ PGVY       G  LY+GK+ N++ R+ ++    +       ++ Q   I FT T
Sbjct: 25  TLPKVPGVYVFHGQRDGMPLYIGKSVNIRSRVMAHFRCKDEG----KLLRQTQRISFTET 80

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALL+EA MIK L+P FN  LR  +    + +        L               
Sbjct: 81  AGELGALLIEAQMIKALQPLFNKRLRRSRQLCSLHLQAS----RLEIVYAKEIDFALTPA 136

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            +G FA+  A  + + ++     L      +      R C    + +C+G C G+ S E+
Sbjct: 137 LYGLFANRTAALEKLRTIADQQQLCYGRLGLEALPPGRACFRHSLHKCAGVCCGKQSEEQ 196

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226
           + + + +A + L           A  +     + D+    I  +   
Sbjct: 197 HQQRLAQALEQLR----IHCWPYAGRVALHEQRGDFNQYHIIHNWFY 239


>gi|312887472|ref|ZP_07747071.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM
           18603]
 gi|311300112|gb|EFQ77182.1| DNA polymerase III, epsilon subunit [Mucilaginibacter paludis DSM
           18603]
          Length = 456

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 8/200 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E +P+ PGVY   D  G+V+YVGKA +L+KR+KS+  +N    +    +  I+ I     
Sbjct: 192 ETLPDAPGVYYFHDAKGKVVYVGKAKSLKKRVKSHFTNNRADLQKQEFLKNIHQITHQTC 251

Query: 64  CTEVEALLLEANMIKRLKPRFNI-LLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
            TE+ A +LE   IKRL P++N    R + ++      D+     L            Y 
Sbjct: 252 GTELLAFILETVEIKRLWPKYNRAQKRHEHTYGLYQYEDQRGYLRLVI-----NKWTKYS 306

Query: 123 GP-FASVDAVEKTINSLQRTFFLRSCADSVF-RHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            P +     +E      Q       C    F +   +PC     K C+   T        
Sbjct: 307 APLYTCNSLLEGYGLLNQLIADFDLCPKLCFIQKNDQPCPRNLTKPCACQVTETPKRYNS 366

Query: 181 MEFVHEAKKFLSGGNHNLKE 200
                      +     +++
Sbjct: 367 RVNKATTHLKAALSTFAIRD 386


>gi|168070128|ref|XP_001786703.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660676|gb|EDQ48483.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 473

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 20/148 (13%)

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY 458
           M+V  +    K +YRKF +    V+  DD   MR V+ RR+S+L+K +            
Sbjct: 1   MIVFTDGRPDKKEYRKFKIKT--VEGPDDYGSMREVIRRRYSRLLKED------------ 46

Query: 459 SFPSWPDVVILDGGKGQLSAAQGVLK-KLNVENRITIISIAKGPKRSAGMEKFFVKKGEA 517
                PD++++DGGKGQ+SAA  VL+ +L +   I +  +AK  K        F    E 
Sbjct: 47  --GRMPDLIVIDGGKGQISAAMDVLENELGLY--IPVCGLAKDEKHKTAQ-LMFGDPPEP 101

Query: 518 LVLNMRDPILYFIQRLRDEAHRFAITTH 545
           + L       Y +QR++DE HRFAIT H
Sbjct: 102 VELKRDSYEFYLLQRVQDEVHRFAITFH 129


>gi|260597615|ref|YP_003210186.1| nucleotide excision repair endonuclease [Cronobacter turicensis
           z3032]
 gi|260216792|emb|CBA30253.1| Excinuclease cho [Cronobacter turicensis z3032]
          Length = 293

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 9/193 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P+ PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I F 
Sbjct: 28  LEDLPKHPGVYVFHGESETMPLYIGKSVNIRSRVLSHLRTPDE----ASMLRQSRRITFI 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
            T  E+ ALLLEA MIK  +P FN  LR ++    +    +   P +   RD   + Q  
Sbjct: 84  RTAGEIGALLLEAQMIKEQQPLFNKRLRRNRQLCSLQFKGEK--PDVVYARDVDFSHQPG 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEK 179
            +G F+S  A   T+ S+     L      +   R  R C    +KRC+G C G+   E 
Sbjct: 142 LYGLFSSRRAALGTLQSIADEQQLCYGLLGLESVRPGRACFRSALKRCAGACCGKEPLEA 201

Query: 180 YMEFVHEAKKFLS 192
           +   + +A + + 
Sbjct: 202 HNARLMDALERMR 214


>gi|156934319|ref|YP_001438235.1| nucleotide excision repair endonuclease [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532573|gb|ABU77399.1| hypothetical protein ESA_02150 [Cronobacter sakazakii ATCC BAA-894]
          Length = 293

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 9/193 (4%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            + +P+ PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I F 
Sbjct: 28  LDDLPKHPGVYVFHGESETMPLYIGKSVNIRSRVLSHLRTPDE----ASMLRQSRRITFI 83

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGS 120
            T  E+ ALLLEA MIK  +P FN  LR ++    +    +   P +   RD   + Q  
Sbjct: 84  RTAGEIGALLLEAQMIKEQQPLFNKRLRRNRQLCSLQFKGEK--PDVVYARDVDFSHQPG 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPCTGEISSEK 179
            +G F+S  A   T+ S+     L      +   R  R C    +KRC+G C G+   E 
Sbjct: 142 LYGLFSSRRAALGTLQSIADEQQLCYGLLGLESVRPGRACFRSALKRCAGACCGKEPLEA 201

Query: 180 YMEFVHEAKKFLS 192
           +   + EA + + 
Sbjct: 202 HNARLMEALERMR 214


>gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
 gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
           16823]
          Length = 458

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 6/199 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E++P  PG+Y+  +   +++Y+GK+ +++KRI+ ++  N  T + + M  +I  I F +
Sbjct: 191 LEEIPNKPGIYKFYNDTNQLIYIGKSKHIKKRIEQHL-KNVKTLKGSIMREEIARIEFEL 249

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK--IPALYKHRDSSTIQGS 120
           T +E+ ALL E+ +IK  KP +N  LR + ++ Y L + + +     LY     +     
Sbjct: 250 TGSELIALLYESELIKIHKPIYNRALRRN-NYSYGLFSFEDQAGFIQLYVD-KINKTSNL 307

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
               F +       I  L   F L           +  C  +QIK+C G C G  +SE Y
Sbjct: 308 PITTFTTKKEANDYIFQLVDEFQLCQ-KLVGLEKSSGSCFGYQIKKCHGACVGAETSESY 366

Query: 181 MEFVHEAKKFLSGGNHNLK 199
              +      L+  + NL 
Sbjct: 367 NLRIQALINQLTFDDDNLF 385


>gi|86144205|ref|ZP_01062541.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Leeuwenhoekiella blandensis MED217]
 gi|85829335|gb|EAQ47801.1| probable DNA-directed DNA polymerase III  (epsilon subunit)
           [Leeuwenhoekiella blandensis MED217]
          Length = 458

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 94/250 (37%), Gaps = 11/250 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P   GVY M +  G V+Y+GK+ N++KR+  +  S++   +   +   +  + +  T 
Sbjct: 192 DLPSTTGVYYMHNANGTVIYIGKSKNIKKRVNQHFTSDH--RKAKKIQEDVETVSYDETG 249

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
           +E+ ALL E   IK +KPR N  LR  K     +   D      L    + +        
Sbjct: 250 SELVALLKENEEIKGIKPRHNRALRRTKFKTQMVQFIDDAGYINLKL--EKANPNTESIT 307

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME- 182
            FA+  + ++ +  +   + L      + +     C  + IK C G C GE + E+Y E 
Sbjct: 308 TFATSHSAKQYLEKMLAEYNLCQSKMGLHQT-NGNCFNYTIKECEGACVGEEAPEQYNER 366

Query: 183 -FVHEAKKFLSGGNHNLKEK---IARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
                +K      N  + ++   +         +  ++    +       +         
Sbjct: 367 VQQFISKHSFENKNFLIIDRGRSVDERSVILIEEGQFKGYGFYNLNFQINNLEILERIIT 426

Query: 239 YNRMDCFSLY 248
               +  + +
Sbjct: 427 PMHDNRDARH 436


>gi|146299725|ref|YP_001194316.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146154143|gb|ABQ04997.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 459

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 51/86 (59%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE PG+Y   + A +V+YVGKA NL+KR+ S+   NN   +  H +  I  I F +  
Sbjct: 197 NLPEKPGIYYFYNQAKKVIYVGKAVNLKKRVTSHFTGNNINPQRQHFLRDIYGISFEICA 256

Query: 65  TEVEALLLEANMIKRLKPRFNILLRD 90
           TE+ ALLLE   IK+L P +N  L+ 
Sbjct: 257 TELMALLLECTEIKKLWPTYNRALKR 282


>gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1]
 gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit
           family [Aromatoleum aromaticum EbN1]
          Length = 478

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 80/217 (36%), Gaps = 5/217 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P+ PGVY         LY+GK+ +L+ R+ ++  +++   R   +  Q+  I + VT
Sbjct: 207 DAIPDAPGVYLFYGENDLPLYIGKSKHLRTRVLAHFGADHRNSREMTLSQQVRRIDWIVT 266

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK-HKIPALYKHRDSSTIQGS-- 120
             E+ ALL EA +IK L P  N  LR  +      +  +            S    G   
Sbjct: 267 AGEIGALLKEAELIKSLLPTMNRKLRRSRELCSWELQPQADGGWRPELVHASDLDFGRQE 326

Query: 121 -YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH-RTRPCLLFQIKRCSGPCTGEISSE 178
             +G F +  A  + +  +     L      + +      C   Q+ RC G C G  S  
Sbjct: 327 HLYGLFRTRRAAIEALRKIAAEQQLCPPLLGLEKPAGDGRCFTHQLHRCKGACAGGESRR 386

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215
            +   +  A   L   +      +      A    D 
Sbjct: 387 LHGARLMLALHDLRVEHWPYPGPVGIREGDAMHVVDS 423


>gi|227111914|ref|ZP_03825570.1| nucleotide excision repair endonuclease [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 281

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 13/186 (6%)

Query: 2   SSEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
             + +P  PGVY     +    LY+GK+ N++ R+ S+M     T +   ++ QI  I F
Sbjct: 20  ELDGLPTAPGVYIFYGDSETLPLYIGKSINIRARVLSHMR----TRKEAKLLRQIRRITF 75

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTI--- 117
             T  E+ ALLLEA MIK+  P FN  LR  +    +          +      +     
Sbjct: 76  IETAGEIGALLLEAQMIKQQVPLFNKRLRRSRQLCSLHFDGT----QIEVVYAKNVDFST 131

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSV-FRHRTRPCLLFQIKRCSGPCTGEIS 176
               +G F+   A    + ++     L      +      R C    +K+C+G C G+ S
Sbjct: 132 TAGLYGLFSHRLAAVNALKTIADEEKLCLGVLGIEHLPAGRACFRHALKKCAGACCGKES 191

Query: 177 SEKYME 182
             ++  
Sbjct: 192 ISEHQN 197


>gi|311031408|ref|ZP_07709498.1| excinuclease ABC subunit C [Bacillus sp. m3-13]
          Length = 85

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 6  MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
          +P+ PG Y M D  G ++YVGKA  L+ R++SY   + H  +   ++++I +  + VT +
Sbjct: 12 LPDQPGCYLMKDRQGTIIYVGKAKVLKNRVRSYFTGS-HDGKTLRLVNEIVDFEYIVTSS 70

Query: 66 EVEALLLEANMIKR 79
           +EAL+LE N+ K+
Sbjct: 71 NIEALILELNLNKK 84


>gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126]
 gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126]
          Length = 465

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 4/190 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E +PE PGVY  L+   +++YVGKA N++KR+ ++   +          SQI+++ + +T
Sbjct: 192 EDLPESPGVYYFLNQKSQIIYVGKAKNIKKRVSNHFGGSKLEVAKQAFQSQIHHVDYYLT 251

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             E+ ALL E++ I++  PR+N   +++   +   L  D+     L   R  +       
Sbjct: 252 GNELIALLHESHEIRKNWPRYNRAQKNNSPGYSIYLYEDRQGYKRLQLGRKQT--GMQSL 309

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
             F +  +    +N + +   +      + +     C  + +  C G C GE S  ++ E
Sbjct: 310 MRFPNHASGFSFLNEVSKKLKICPKFAGI-QSSPGTCFDYSVNLCEGACAGEESVSQHNE 368

Query: 183 FVHEAKKFLS 192
            +        
Sbjct: 369 KIQAFIDHCK 378


>gi|225012865|ref|ZP_03703298.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
 gi|225002987|gb|EEG40964.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
          Length = 458

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 102/257 (39%), Gaps = 10/257 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++P   GVY + +    ++Y+GK+ N++KR+ S++       +   + +++++I F++T
Sbjct: 191 DKLPSEMGVYYLHNSENEIIYIGKSNNIKKRVLSHLTGTQ--RKSIAIQAELSHITFSLT 248

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPY-ILITDKHKIPALYKHRDSSTIQGSYF 122
             E+  LL E N IK + P+FN  +R  + FP  I I +    P L    +   ++  Y 
Sbjct: 249 GGELVTLLKEQNEIKNIAPKFNRAMR-FRIFPMGIRIDNTETYPKLIL--EQVKLEEQYI 305

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
             F +    +  +      F + +   S+ +  T  C    I++C G C G  + E Y  
Sbjct: 306 SVFKNQKVAKTVLFRWADDFGICTHKTSLSKSDT-ACFNHGIQKCDGACIGAETPESY-- 362

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
              + +  L   ++  +  +     +   +  +        R      + +   S     
Sbjct: 363 -QEKIQLLLEDLSYPHEHFLIIERGKKEGESSFVYIENSIFRGYGYHELNHQIKSQNQIE 421

Query: 243 DCFSLYHNKNLACIQTC 259
                  N   A     
Sbjct: 422 ARLIPMENNPDAQKLIR 438


>gi|149372989|ref|ZP_01891945.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354349|gb|EDM42916.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 472

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++P   G+Y   D  G++LYVGKA N++KR+ S+++S   T +  +M ++ +++ F  T 
Sbjct: 201 RLPSTAGIYLFKDKKGKILYVGKAKNIKKRVLSHLYS--KTQKSINMCAETHHLDFVETG 258

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDD-KSFPYILITDKHKIPALYK--HRDSSTIQGSY 121
            E+ ALLLE++ I++  P+FN   +   K+F  I  T++  +  +     R ++    + 
Sbjct: 259 NELSALLLESDYIQQFYPKFNKAQKRPVKTFQIISYTNRIGVEQIALGECRSATNSVYTL 318

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           +    +  A    +  L  T+ L        +    PC  ++I  C G C+G   +  Y 
Sbjct: 319 Y----NKIAGLALLTRLCETYNLCP-KYCALQTTNEPCSHYKITDCYGVCSGNEPAVAYN 373

Query: 182 EFVHEAKKFLSG 193
           + V +A + L  
Sbjct: 374 KRVSKALEALEN 385


>gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC
           13950]
          Length = 323

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVY     +  VLY+G A +L++R+  Y    +   R+  M++    +    
Sbjct: 220 ADGLPHRPGVYLFRGPSDEVLYIGTAVDLRRRVLQYFTGADPRGRMKEMVTLACAVDHVE 279

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA 107
               +EA + E  ++    P +N   R  + + ++ +T     P 
Sbjct: 280 CAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALT-DEAFPR 323


>gi|329296173|ref|ZP_08253509.1| nucleotide excision repair endonuclease [Plautia stali symbiont]
          Length = 286

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 16/218 (7%)

Query: 6   MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +P  PG Y          LY+GK+ NL+ R+ ++  + +       M+ Q   + +  T 
Sbjct: 31  LPNQPGAYTFHGDNDNLPLYIGKSINLRSRVMAHFRTADE----ASMLRQARRVSWIPTA 86

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS-TIQGSYFG 123
            +V A LLEA MIK  +P FN  LR ++    + +      P +   RD   +     +G
Sbjct: 87  GDVGAQLLEAQMIKTQQPLFNKRLRKNRQLCSLQL--GDGAPQVVYARDLDFSSSTDLYG 144

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYME 182
            F S  A  + + SL     L      + R    R C    +KRC+G C G      Y +
Sbjct: 145 LFRSHFAALEKLKSLADELRLCHGLLGLERLQPGRGCFRAALKRCAGACCGAEPLAAYQQ 204

Query: 183 -------FVHEAKKFLSGGNHNLKEKIARNMNQATLKE 213
                   +        G    ++              
Sbjct: 205 RLLARLEQLRVVCWPWQGPVGMVERGTEMTQIHVIAHW 242


>gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
          Length = 486

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 2/192 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+       +LYVGK+ N+ +R+ S+   ++++ R   M   +  + +T 
Sbjct: 202 LQDLPRGPGVYRFYGENDVLLYVGKSTNIAQRVASHFSGDHNSARGVRMSESLRRVEWTE 261

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK-IPALYKHRDSSTIQ-GS 120
           T  E+ ALLLE   IK LKP FN   R  K+   I ++            R+    + G 
Sbjct: 262 TAGELGALLLELKQIKTLKPLFNRRSRAAKNLVSIELSRNEAGYLQARLVREIEPHRLGD 321

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFG F S    E+ ++ +     L +    +      PC    + RC G C    + E+Y
Sbjct: 322 YFGLFRSKRDAERALSGIAAKNELCNRLLGLEPEHEGPCFQRALGRCKGACEELENVERY 381

Query: 181 MEFVHEAKKFLS 192
              V  A   L 
Sbjct: 382 NLRVQIAFHGLR 393


>gi|332293348|ref|YP_004431957.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171434|gb|AEE20689.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 466

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 6/189 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++PE  G+Y   D AG+V+YVGKA N++KR+ S+ +   +  +   +  +   I + VT
Sbjct: 200 QELPETAGIYLFKDRAGKVIYVGKAINIKKRVLSHFYDKKN--KEYLLGQETYQIDYEVT 257

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGSYF 122
             E+ ALLLE+  I++  P+FN   +   S +  I   ++  I  L   +       +  
Sbjct: 258 GNELCALLLESEYIQQYFPKFNRAQKIPTSNYSIISYENRKGIIQLAVAKTKYRHTATQ- 316

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
             F    A E+ +   +             +     C  + +K C G C+   S   Y  
Sbjct: 317 KVFTRAKATERLMELCEMYELCPRF--CGLQATFNECSHYSLKNCKGICSNNESVTDYNL 374

Query: 183 FVHEAKKFL 191
            V EA +  
Sbjct: 375 RVREALQSF 383


>gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 616

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E +P  PGVY     +G  LY+G A NL++R++ Y++ N+    I H++ Q  NI     
Sbjct: 246 ENVPSSPGVYIFRSHSGEPLYIGTAVNLRRRLRQYINGNDKRRLIPHLLPQTRNIDTIEC 305

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYI--LITDKHKIPALYKHRDSSTIQGSY 121
               EA + EA +I + +P FN   ++ + + +I       H +      RD  +     
Sbjct: 306 AHGFEAEVREATLIAKFRPPFNRRSKEPRQYWWISGARPRAHDVSRATISRDPRSPNA-- 363

Query: 122 FGPF 125
            GPF
Sbjct: 364 LGPF 367


>gi|327540726|gb|EGF27295.1| excinuclease ABC subunit C [Rhodopirellula baltica WH47]
          Length = 494

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 80/359 (22%), Positives = 140/359 (38%), Gaps = 23/359 (6%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PG+Y M D  G ++YVGK+ +L+ R+ SY        +   +I     I++    ++
Sbjct: 141 PPVPGIYGMFDRHGELIYVGKSRSLRHRLLSYFGEAARKEKGGRIIENSRAIQWETQPSD 200

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFP-YILITDK--HKIPALYKHRDSSTIQGSYFG 123
             A L E  +I+R  PRFN+     +  P Y+ +  K              +T   +  G
Sbjct: 201 FAAQLRELQLIRRWTPRFNVQGVPHRHRPVYLCLGRKPAETF--FLASSPPATDCVAIEG 258

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSV----------FRHRTRP-CLLFQIKRCSGPCT 172
           PF   + +   +++L +TF LR C+             F    RP CL  +I  C GPC 
Sbjct: 259 PFYGAERMRSVVDALNKTFQLRDCSQQTVFQYQDQLSLFELSPRPGCLRLEIGTCLGPCA 318

Query: 173 GEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQ 232
              S ++Y++ V+ A+ FL G N      +   M  A+  + YE A   RD L +L +  
Sbjct: 319 AACSRDEYVQRVNAAQSFLDGFNDEPLVAVRELMESASANQQYELASRARDTLKSLQYAS 378

Query: 233 NHNDSIYNRMDCFS--LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                + +    FS         AC        G+     +     D        L    
Sbjct: 379 RKLGHLADARRDFSFVYAATGYDACSIWYLVRSGEIIDVASAPKDRDQY-----QLLRPT 433

Query: 291 RQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
            + +       +  +  +   +  +  S+F+++  ++K T   +G  R+    +   A 
Sbjct: 434 LKKWQSLLGSRHQRVRVDQPHSVAVVASWFRKHRGELKQTFQPEGAGRRYHRLSHHRAD 492


>gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 454

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 99/278 (35%), Gaps = 26/278 (9%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITHMISQINNIRFT 61
            E +P   GVY M +  G ++Y+GK+ N++KR+  +    NN + +I     Q+  + F 
Sbjct: 190 LENLPSATGVYYMHNAKGEIIYIGKSKNIKKRVNQHFTGKNNKSKKIQK---QVAAVTFE 246

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDD------KSFP----YILITDKHKIPALYKH 111
            T +E+ ALL E+  IKR +P +N   R +       S+     YI +        + K 
Sbjct: 247 RTGSELVALLKESEEIKRKRPIYNRAQRKNIFQFAMGSYVDENGYIGL-------RIEKA 299

Query: 112 RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
                    +   F ++   +  +  L   F L    + +   +++ C  + IK C G C
Sbjct: 300 DGRKK----HITTFTNMSQAKHVMFKLTEDFKLCQKINELHSSKSQ-CFQYTIKECDGAC 354

Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHI 231
             +     Y + V EA    S  N N+        +        E+         +L++ 
Sbjct: 355 INQEDVTSYNKRVQEAIDRYSYANKNMLIIDKGRHHDERSAILIENGQYKGFGFYSLNYQ 414

Query: 232 QNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGT 269
               + +   +       +                   
Sbjct: 415 ITKREVLEKIITPMQNNRDVQHIIQSHLRRKNRFKIIH 452


>gi|32474695|ref|NP_867689.1| exinuclease ABC subunit C [Rhodopirellula baltica SH 1]
 gi|32445234|emb|CAD75236.1| exinuclease ABC subunit C [Rhodopirellula baltica SH 1]
          Length = 494

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 81/359 (22%), Positives = 140/359 (38%), Gaps = 23/359 (6%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P  PG+Y M D  G ++YVGK+ +L+ R+ SY        +   +I     I++    ++
Sbjct: 141 PPVPGIYGMFDRHGELIYVGKSRSLRHRLLSYFGEAARKEKGGRIIENSRAIQWETQPSD 200

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFP-YILITDK--HKIPALYKHRDSSTIQGSYFG 123
             A L E  +I+R  PRFN+     +  P Y+ +  K              +T   +  G
Sbjct: 201 FAAQLRELQLIRRWTPRFNVQGVPHRHRPVYLCLGRKPAETF--FLASSPPATDCVAIEG 258

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSV----------FRHRTRP-CLLFQIKRCSGPCT 172
           PF   D +   +++L +TF LR C+             F    RP CL  +I  C GPC 
Sbjct: 259 PFYGADRMRSVVDALNKTFQLRDCSQQTVFQYQDQLSLFELSPRPGCLRLEIGTCLGPCA 318

Query: 173 GEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQ 232
              S ++Y++ V+ A+ FL G N      +   M  A+  + YE A   RD L +L +  
Sbjct: 319 AACSRDEYVQRVNAAQSFLDGFNDEPLVAVRELMESASANQQYELASRARDTLKSLQYAS 378

Query: 233 NHNDSIYNRMDCFS--LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
                + +    FS         AC        G+     +     D        L    
Sbjct: 379 RKLGHLADARRDFSFVYAATGYDACSIWYLVRSGEIIDVASAPKDRDQY-----QLLRPT 433

Query: 291 RQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAH 349
            + +       +  +  +   +  +  S+F+++  ++K T   +G  R+    +   A 
Sbjct: 434 LKKWQSLLGSRHQRVRVDQPHSVAVVASWFRKHRGELKQTFQPEGAGRRYHRLSHHRAD 492


>gi|187478089|ref|YP_786113.1| excinuclease [Bordetella avium 197N]
 gi|115422675|emb|CAJ49202.1| excinuclease [Bordetella avium 197N]
          Length = 301

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 8/194 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +  +P   GVY     A   LY+GK+ +++ R  S++     T     M+ Q+  +    
Sbjct: 17  ARTLPRSTGVYLYFGEATLPLYIGKSVDMRGRFLSHLR----TPAEAAMMRQVRRVDCIE 72

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD---KHKIPALY-KHRDSSTIQ 118
           T  E+ ALLLEA++IK+  P FN  LR  +    + +         P +          +
Sbjct: 73  TAGELGALLLEASLIKQRMPLFNQRLRRTRRLHVLRLASLACGGLQPRIEGLTGTPLECE 132

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
            + FG F S  A  + + SL +   L      + R  +R C   Q+ RC G C G    +
Sbjct: 133 AARFGLFKSRSAAVEHLRSLAQAHELCLGLLGIERMGSRGCFGLQLGRCRGVCVGREPRQ 192

Query: 179 KYMEFVHEAKKFLS 192
            + + + EA   L 
Sbjct: 193 THDQRLQEALDALR 206


>gi|317492195|ref|ZP_07950625.1| GIY-YIG catalytic domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919900|gb|EFV41229.1| GIY-YIG catalytic domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 291

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 15/193 (7%)

Query: 6   MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +P  PGVY     +    LY+GK+ N++ R+ S+  + N       ++    +I+     
Sbjct: 35  LPAKPGVYIFHGTSKTMPLYIGKSVNIRSRVMSHFRNKNE----AKLLHLTTHIKHIEMA 90

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA----LYKHRDSSTIQGS 120
            E+ ALL EA +IK  KP FN  LR  K    + +      P     +Y      + +  
Sbjct: 91  GELGALLTEARLIKEQKPLFNKRLRHAKQLCSLSLQ-----PRGVEIVYAGDTHFSHKAQ 145

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            FG F++  +  +T+ ++     L      + R  + R C  + +KRC+G C G+ S E+
Sbjct: 146 LFGLFSNKSSALETLRAVADQQRLCYGVLGLERLAQGRSCFRYSLKRCAGACCGKESLEE 205

Query: 180 YMEFVHEAKKFLS 192
           +   + +A + + 
Sbjct: 206 HQLRLEQAMESIR 218


>gi|323253652|gb|EGA37480.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
          Length = 83

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
           + IQ +RDE+H  AI  HRK+R K    S L+ I G+GP R+++LL+  G ++ +  +S 
Sbjct: 1   HVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASV 60

Query: 587 ETLASIEGISKKIACKIY 604
           E +A + GIS+ +A KI+
Sbjct: 61  EEIAKVPGISQGLAEKIF 78


>gi|21231864|ref|NP_637781.1| nucleotide excision repair endonuclease [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768008|ref|YP_242770.1| nucleotide excision repair endonuclease [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113585|gb|AAM41705.1| excinuclease ABC subunit C homolog [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573340|gb|AAY48750.1| excinuclease ABC subunit C homolog [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 285

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 33/206 (16%)

Query: 2   SSEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
             + +P  PGVY     +    LY+GK+ +L+ R+  +  +         ++ Q  +I+ 
Sbjct: 26  ELDTLPATPGVYLFHGQSSTLPLYIGKSIHLRNRVMDHFRNAAE----ASLLRQTRSIQV 81

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTI 117
                ++ A LLE+ +IK L+P +N  LR              +IP    +  +R   +I
Sbjct: 82  IEMAGDIGAQLLESQLIKTLRPLYNQKLR--------------RIPRQFSIRLYRGEVSI 127

Query: 118 QGS----------YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKR 166
           + S           +G ++S  A ++T+  L     L      + R    RPC    +KR
Sbjct: 128 EHSGEIDPAAAPWLYGLYSSPRAAKETLRRLADQHHLCYGLLGLERLQAGRPCFRAMLKR 187

Query: 167 CSGPCTGEISSEKYMEFVHEAKKFLS 192
           CSG C G    + + E +    + L 
Sbjct: 188 CSGACHGAEPLDAHEERLRSVLQHLE 213


>gi|226945002|ref|YP_002800075.1| nucleotide excision repair endonuclease [Azotobacter vinelandii DJ]
 gi|226719929|gb|ACO79100.1| Excinuclease ABC protein, subunit C [Azotobacter vinelandii DJ]
          Length = 282

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 77/191 (40%), Gaps = 11/191 (5%)

Query: 5   QMPECPGVYQML-DIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            MP+ PGVY    D     LY+GK+ +++ R+ +++     T     ++ Q   I    T
Sbjct: 26  SMPKAPGVYLFYGDSDSLPLYIGKSVDIRARLLAHLR----TPEEARLLRQTRRIEHIRT 81

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS-YF 122
             E+ ALLLE+ +IK L+P +N  LR  +    I + D                +    +
Sbjct: 82  AGEIGALLLESRLIKELQPLYNKRLRCQRRLYSIRLADG----RPEVVEAVPPDREQALY 137

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRH-RTRPCLLFQIKRCSGPCTGEISSEKYM 181
           G F S     + +  +     L      + RH   R C   QI RC+G C G  S E + 
Sbjct: 138 GLFRSRRVAGERLLEMADRHRLCLGLLGLERHEPGRACFRTQIGRCAGACAGRESHEAHA 197

Query: 182 EFVHEAKKFLS 192
             +  A     
Sbjct: 198 ARLLAALTEWQ 208


>gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
 gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
          Length = 453

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 107/248 (43%), Gaps = 6/248 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E +P   G+Y + +  G ++Y+GK+ N++KR+  +      +++   M   +  + F  T
Sbjct: 191 ESLPSKTGIYYIHNEKGDLIYIGKSKNIKKRVNQHFTGT--SNKSKKMQRDVYAVTFEET 248

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGSYF 122
            +E+ ALL E+  IK  KP +N+  R  KS F Y L + K++   +    + +  +    
Sbjct: 249 GSELIALLKESEEIKINKPIYNVAQR--KSIFQYALYSHKNEQGYIAFTIEKADGRKKEI 306

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
             F+++      +  +   + L    + ++  +   C  ++IK C+G C  E   E+Y E
Sbjct: 307 TSFSTLQEGRNFLFKITEKYNLCQKINGLYSTKN-ACFQYKIKECNGACIEEEKPEQYNE 365

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRM 242
            V E  +  S  N+N+                 E+ I        L++  ++ D + N +
Sbjct: 366 RVKEFIEESSFENNNMIILDRGRTFDERSAVLIENGIYKGYCFYELNYQISNIDILKNIL 425

Query: 243 DCFSLYHN 250
                  +
Sbjct: 426 IPMQNNRD 433


>gi|126031195|pdb|2NRR|A Chain A, Crystal Structure Of The C-Terminal Rnaseh Endonuclase
           Domain Of Uvrc
          Length = 159

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 31/189 (16%)

Query: 363 QMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDV 422
              L++  K   +   P RIE  D SH+ G   V  +VV  +    K  YR++ +  +  
Sbjct: 1   MEALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKGDYRRYKIEQDH- 59

Query: 423 KTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGV 482
              DD   +R V++RR+S+                      P+++ +DGG GQ++AA   
Sbjct: 60  --PDDYESIRTVVKRRYSK-------------------HPLPNLLFVDGGIGQVNAAIEA 98

Query: 483 LKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI 542
           LK++  +    ++ +AK  +         V +   + L    P+L  + ++RDE HRFA+
Sbjct: 99  LKEIGKDC--PVVGLAKKEET-------VVFENREIHLPHDHPVLRLLVQIRDETHRFAV 149

Query: 543 TTHRKRRKK 551
           + HRKRR+K
Sbjct: 150 SYHRKRREK 158


>gi|254480459|ref|ZP_05093706.1| GIY-YIG catalytic domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039042|gb|EEB79702.1| GIY-YIG catalytic domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 282

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 4/180 (2%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           MP+CPG+Y+ LD  G  LY+GK+ N++ R+K+++       R   M+S+   I    T  
Sbjct: 1   MPDCPGIYRFLDRNGCALYIGKSINIRSRVKTHLAEARGLSRKHRMLSETKCIDVRPTAG 60

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKI--PALYKHRDSSTIQGSYF 122
           E+ ALLLE + IK+  P FN   R  K  + Y L + + +   P L  +        + +
Sbjct: 61  EIGALLLENDAIKKQAPAFNRRQRSIKKMWSYALTSGRGEFCVPTLQSYSMHKPEILASY 120

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
           G + S    +K +    R   L             PC  FQI RC G C    S+E +  
Sbjct: 121 GAYTSPSRAKKALEQATRDHGLCPRILG-LEAGKGPCFNFQIGRCRGACADFESAESHNR 179


>gi|323186921|gb|EFZ72239.1| hypothetical protein ECRN5871_4803 [Escherichia coli RN587/1]
          Length = 259

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 19/246 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + +++K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLSEK----RVDVVYAKEVDFSRAPNLFGLFANR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
            A  + + ++     L           R R C    +KRC+G C G+ S + +   + ++
Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDDHALRLRQS 173

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
            + L                 A  ++  E    H  +        N        +   + 
Sbjct: 174 LERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAG 227

Query: 248 YHNKNL 253
           + +   
Sbjct: 228 FDHDGY 233


>gi|21243291|ref|NP_642873.1| nucleotide excision repair endonuclease [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108830|gb|AAM37409.1| excinuclease ABC subunit C homolog [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 284

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 13/193 (6%)

Query: 5   QMPECPGVYQMLDIA-GRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P   GVY       G  LY+GK+ NL+ R+  +      T R   ++ Q   I     
Sbjct: 28  TLPTTAGVYLFHGKDSGLPLYIGKSINLRMRVMDHFR----TPREASLLRQTRRISVFEM 83

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             ++ A LLE+ +IK ++P +N  LR       I +        +     +         
Sbjct: 84  AGDLGAQLLESQLIKSMRPLYNQKLRRVPRQFSIRLYCGE----VSIVHSAERDPAVTPW 139

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEK 179
            +G ++S  A ++ +  L     L      + R    RPC    ++RC+G C G  S   
Sbjct: 140 LYGLYSSPRAAKEALRRLADRDRLCYGLLGLERATDGRPCFRAMLERCAGACHGAESLGD 199

Query: 180 YMEFVHEAKKFLS 192
           +   +  A + L 
Sbjct: 200 HETRLRAALQHLE 212


>gi|309788808|ref|ZP_07683403.1| excinuclease cho [Shigella dysenteriae 1617]
 gi|308923079|gb|EFP68591.1| excinuclease cho [Shigella dysenteriae 1617]
          Length = 252

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 13/173 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R++S++   +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTMPLYIGKSVNIRSRVRSHLRPPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + + +K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
            A  + + S+     L           R R C    +KRC+G C G+ S E++
Sbjct: 114 RAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEH 166


>gi|320184221|gb|EFW59036.1| nucleotide excision repair endonuclease [Shigella flexneri CDC
           796-83]
 gi|332096304|gb|EGJ01305.1| hypothetical protein SB359474_1503 [Shigella boydii 3594-74]
          Length = 259

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 92/246 (37%), Gaps = 19/246 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + + +K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
            A  + + ++     L           R R C    +KRC+G C G+ S E++   + ++
Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
            + L                 A  ++  E    H  +        N  +     +   + 
Sbjct: 174 LERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAG 227

Query: 248 YHNKNL 253
           + +   
Sbjct: 228 FDHDGY 233


>gi|323153015|gb|EFZ39284.1| excinuclease cho [Escherichia coli EPECa14]
 gi|323180520|gb|EFZ66065.1| hypothetical protein ECOK1180_0509 [Escherichia coli 1180]
          Length = 259

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 19/246 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + + +K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
            A  + + S+     L           R R C    +KRC+G C G+ S E++   + ++
Sbjct: 114 RAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
            + L                 A  ++  E    H  +        N  +     +   + 
Sbjct: 174 LERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAG 227

Query: 248 YHNKNL 253
           + +   
Sbjct: 228 FDHDGY 233


>gi|312969769|ref|ZP_07783952.1| excinuclease cho [Escherichia coli 1827-70]
 gi|310338054|gb|EFQ03143.1| excinuclease cho [Escherichia coli 1827-70]
 gi|323169376|gb|EFZ55052.1| excinuclease cho [Shigella sonnei 53G]
          Length = 259

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 92/246 (37%), Gaps = 19/246 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + + +K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
            A  + + ++     L           R R C    +KRC+G C G+ S E++   + ++
Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
            + L                 A  ++  E    H  +        N  +     +   + 
Sbjct: 174 LERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAG 227

Query: 248 YHNKNL 253
           + +   
Sbjct: 228 FDHDGY 233


>gi|331683248|ref|ZP_08383849.1| excinuclease cho [Escherichia coli H299]
 gi|331079463|gb|EGI50660.1| excinuclease cho [Escherichia coli H299]
          Length = 259

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 19/246 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + + +K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
            A  + + S+     L           R R C    +KRC+G C G+ S E++   + ++
Sbjct: 114 RAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
            + L             N   A  ++  E    H  +        N  +     +   + 
Sbjct: 174 LERLRVVCWPW------NGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRAPAG 227

Query: 248 YHNKNL 253
           + +   
Sbjct: 228 FDHDGY 233


>gi|323158460|gb|EFZ44476.1| hypothetical protein ECE128010_5226 [Escherichia coli E128010]
 gi|332758631|gb|EGJ88950.1| hypothetical protein SF274771_1818 [Shigella flexneri 2747-71]
 gi|332759197|gb|EGJ89506.1| hypothetical protein SFK671_1868 [Shigella flexneri K-671]
 gi|332767188|gb|EGJ97383.1| endonuclease of nucleotide excision repair [Shigella flexneri
           2930-71]
 gi|333004249|gb|EGK23780.1| hypothetical protein SFK218_2330 [Shigella flexneri K-218]
          Length = 259

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 19/246 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + + +K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
            A  + + S+     L           R R C    +KRC+G C G+ S E++   + ++
Sbjct: 114 RAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
            + L                 A  ++  E    H  +        N  +     +   + 
Sbjct: 174 LERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAG 227

Query: 248 YHNKNL 253
           + +   
Sbjct: 228 FDHDGY 233


>gi|289524518|ref|ZP_06441372.1| excinuclease ABC, C subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502242|gb|EFD23406.1| excinuclease ABC, C subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 258

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 22/195 (11%)

Query: 349 HRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFV 408
             S   +   +      L+   +   + +   RIE  D SH+ G    G  VV  +    
Sbjct: 86  QISFALRDPLDKEIWKALERLQEILGIAYPLWRIEGCDISHLSGRETYGVFVVFEQGMPN 145

Query: 409 KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVI 468
            + YR++ +    V+  DD   +  ++ RR+S LI+                   P +++
Sbjct: 146 PSLYRRYVIKT--VEGIDDFRSIEEIVRRRYSSLIE--------------KNMPLPQLLL 189

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +DGG  QLS A   L +L +EN I  +++AK  +     E +       L L + DP L 
Sbjct: 190 VDGGALQLSFALKALNQLGIEN-IYAVALAKEEE-----ELYLPDSRIPLKLPLDDPGLN 243

Query: 529 FIQRLRDEAHRFAIT 543
            ++R+RDEAHRFA++
Sbjct: 244 LLRRIRDEAHRFALS 258



 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 42/84 (50%)

Query: 155 RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214
           ++RPCL + + +C GPC G  +  +Y E V +   FL G    L E + + MN+A     
Sbjct: 6   QSRPCLRYNMGKCLGPCAGLCTQREYQELVDDVILFLRGQTSALVESLRKKMNEAVESLA 65

Query: 215 YESAIIHRDRLAALSHIQNHNDSI 238
           +E A  +RD + AL  +     S 
Sbjct: 66  FEKAAFYRDAIRALWRLSRQQISF 89


>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
 gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
          Length = 483

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 2/211 (0%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P  PGVY+       +LYVGK+ N+ +R+ S+   ++++ R   M   +  + +T 
Sbjct: 202 LQNLPRGPGVYRFYGENDVLLYVGKSTNIAQRVASHFSGDHNSSRGIRMSESLRRVDWTE 261

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT-DKHKIPALYKHRDSSTIQ-GS 120
           T  E+ ALLLE   IK+LKP FN   R  K+   I +T +           +    + G 
Sbjct: 262 TAGELGALLLELKQIKQLKPLFNRRSRAAKNLVSIELTENSSGYLQARLVWEIEPHRLGD 321

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           YFG F S    EK ++ +     L +    +      PC    + RC G C G     +Y
Sbjct: 322 YFGLFRSKKDAEKALSGIAAKNDLCNKLLGLEPDGDGPCFQRSLGRCKGACDGGEDVVRY 381

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATL 211
                 A   L       K  +    + A  
Sbjct: 382 NLRTQIAFHGLRLKTWPWKGPVGVVEHNART 412


>gi|148927599|ref|ZP_01811068.1| Nuclease subunit of the excinuclease complex-like protein
           [candidate division TM7 genomosp. GTL1]
 gi|147887057|gb|EDK72556.1| Nuclease subunit of the excinuclease complex-like protein
           [candidate division TM7 genomosp. GTL1]
          Length = 108

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 5/109 (4%)

Query: 505 AGMEKFFVKKGE--ALVLNMRDPILYFIQRLRDEAHRFAITTHRK-RRKKAAYSPLDEIN 561
           A ++   ++  +   L L     I+  +QR+RDE+HRFA++ H   +R  A  S LDEI 
Sbjct: 2   ASIDILIIESEDFYTLRLPHDSHIIKLLQRIRDESHRFAVSYHSNLKRTGATKSILDEIP 61

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           GIGP  ++ L+ +FG+V+ +  ++PE LA++ G  +K A  +    H +
Sbjct: 62  GIGPATRKKLVTAFGSVRGVKTAAPEQLAAVLG--EKKAKLVTAWLHNS 108


>gi|300938924|ref|ZP_07153625.1| GIY-YIG catalytic domain protein [Escherichia coli MS 21-1]
 gi|300456123|gb|EFK19616.1| GIY-YIG catalytic domain protein [Escherichia coli MS 21-1]
          Length = 259

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 19/246 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTTPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + + +K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
            A  + + ++     L           R R C    +KRC+G C G+   + +   + ++
Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKEGHDDHALRLRQS 173

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
            + L                 A  ++  E    H  +        N  +     +   + 
Sbjct: 174 LERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATMLIRTPAG 227

Query: 248 YHNKNL 253
           + +   
Sbjct: 228 FDHDGY 233


>gi|289165197|ref|YP_003455335.1| excinuclease abc, subunit c [Legionella longbeachae NSW150]
 gi|288858370|emb|CBJ12238.1| putative excinuclease abc, subunit c [Legionella longbeachae
           NSW150]
          Length = 518

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTVT 63
           ++   PG+Y+ML   G +LY+GKA +L+ R+ SY     N   R   M++Q+ +I     
Sbjct: 219 KLSNKPGIYRMLAEDGTILYIGKATSLKARVNSYFRGTKNRDRRKLEMLTQVWDIETIEC 278

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDD 91
            T +EA LLE++ IK+  P +N+LL+ D
Sbjct: 279 DTPLEAALLESDEIKKWTPPYNVLLKSD 306


>gi|333006846|gb|EGK26343.1| hypothetical protein SFK272_2156 [Shigella flexneri K-272]
 gi|333018763|gb|EGK38056.1| hypothetical protein SFK227_1834 [Shigella flexneri K-227]
          Length = 259

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 93/250 (37%), Gaps = 19/250 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + + +K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
            A  + + S+     L           R R C    +KRC+G C G+ S E++   + ++
Sbjct: 114 RAALQALQSIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQS 173

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
            + L                 A  ++  E    H  +        N  +     +   + 
Sbjct: 174 LERLRVVCWPW------QGAVALKEQPPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAG 227

Query: 248 YHNKNLACIQ 257
           + +     + 
Sbjct: 228 FEHDGYKMLC 237


>gi|227885834|ref|ZP_04003639.1| nucleotide excision repair endonuclease [Escherichia coli 83972]
 gi|227837407|gb|EEJ47873.1| nucleotide excision repair endonuclease [Escherichia coli 83972]
 gi|315290504|gb|EFU49878.1| GIY-YIG catalytic domain protein [Escherichia coli MS 153-1]
 gi|330911545|gb|EGH40055.1| excinuclease cho (excinuclease ABC alternative C subunit)
           [Escherichia coli AA86]
          Length = 259

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 90/246 (36%), Gaps = 19/246 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + + +K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
            A  + + ++     L           R R C    +KRC+G C G+ S + +   + ++
Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDDHALRLRQS 173

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
            + L                 A  ++  E    H  +        N        +   + 
Sbjct: 174 LERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAG 227

Query: 248 YHNKNL 253
           + +   
Sbjct: 228 FDHDGY 233


>gi|320194551|gb|EFW69182.1| nucleotide excision repair endonuclease [Escherichia coli
           WV_060327]
          Length = 259

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 19/246 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + +++K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLSEK----RVDVVYAKEVDFSRAPNLFGLFATR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
            A  + + ++     L           R R C    +KRC+G C G+ S + +   + ++
Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDDHALRLRQS 173

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
            + L                 A  ++  E    H  +        N        +   + 
Sbjct: 174 LERLRVVCWPW------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAG 227

Query: 248 YHNKNL 253
           + +   
Sbjct: 228 FDHDGY 233


>gi|331663221|ref|ZP_08364131.1| excinuclease cho [Escherichia coli TA143]
 gi|331059020|gb|EGI30997.1| excinuclease cho [Escherichia coli TA143]
          Length = 259

 Score =  124 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 19/246 (7%)

Query: 13  YQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
           Y     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALL
Sbjct: 2   YLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALL 57

Query: 72  LEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASV 128
           LEA +IK  +P FN  LR ++    + + +K     +                FG FA+ 
Sbjct: 58  LEARLIKEQQPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRASNLFGLFANR 113

Query: 129 DAVEKTINSLQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEA 187
            A  + + ++     L           R R C    +KRC+G C G+ S E++   + +A
Sbjct: 114 RAALQALQTIADEQKLCYGLLGLEPLSRGRSCFRSALKRCAGACCGKESHEEHALRLRQA 173

Query: 188 KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSL 247
            + L                 A  ++  E    H  +        N  +     +   + 
Sbjct: 174 LERLRVVCWPW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAG 227

Query: 248 YHNKNL 253
           + +   
Sbjct: 228 FDHDGY 233


>gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 457

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 28/207 (13%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PG+Y   D  G+++YVGKA N+QKR+  + +  N + +   +  +  +I + ++
Sbjct: 195 DDLPAKPGIYYFKDKKGKIIYVGKAKNIQKRVLGHFY--NKSKKELDLCRETADIDYELS 252

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +E+ ALL+E   IK   PR+N+  +          T K           +      +  
Sbjct: 253 GSELIALLMEDAAIKHHYPRYNVASKR---------TPK----RFAIFEYADRRGVRHLA 299

Query: 124 ------------PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
                        F ++      +  L   F L        +   + C  F I+ C G C
Sbjct: 300 INDAKIIQDPLIVFYNIRDCRTYLERLCMQFDLCP-KYCHLQENVKECSHFMIQSCQGIC 358

Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNL 198
             E + E Y E V +A       + N+
Sbjct: 359 KSEEAIETYNERVQQAIAHSKESSQNV 385


>gi|319952129|ref|YP_004163396.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319420789|gb|ADV47898.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 457

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 6/179 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PG+Y   +  G+++YVGKA +++KR+ S+ +  + T +   M  + + I F ++
Sbjct: 193 DNLPNTPGIYFFKNAKGKIIYVGKAIDIKKRVLSHFY--DKTTKEIAMCQETSAIDFELS 250

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSST-IQGSYF 122
            +E+ ALL+E++ IK   P +N   +  K  P+ + T + +   ++   ++      S++
Sbjct: 251 GSEIMALLMESDAIKHHYPDYNRAQKK-KVQPFGIFTYEDRNGIMHLAWNTQKMAPNSFY 309

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
             + S  A    +  L +T+ L        +     C  + I  C G C G    E Y 
Sbjct: 310 TLY-SKTASRTFLQELCKTYKLCP-KFCHLQENVPQCSHYDILECEGICRGTEEIEAYN 366


>gi|322830900|ref|YP_004210927.1| Excinuclease ABC C subunit domain protein [Rahnella sp. Y9602]
 gi|321166101|gb|ADW71800.1| Excinuclease ABC C subunit domain protein [Rahnella sp. Y9602]
          Length = 283

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 87/232 (37%), Gaps = 26/232 (11%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P   GVY          LY+GK+ N++ R+ S+  +         ++    +I F 
Sbjct: 23  LENLPNGSGVYIFYGDDNAFPLYIGKSVNIRSRVMSHFRNPAE----AKLLHMTRDIEFI 78

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILI---------TDKHKIPALYKHR 112
            T  EV ALLLE+++IK  +P FN  LR  +    I +         +D           
Sbjct: 79  ETIGEVGALLLESDLIKTRRPLFNKRLRTARKLCSIRLQGLTASIVFSDDVDF------- 131

Query: 113 DSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPC 171
              +     FG F +  +  + I  +     L   A  + +  + R C  F + +C+G C
Sbjct: 132 ---SHSEDLFGLFKTKMSAVEKIRDIADQEKLCYGALGLEKLAKNRACFRFSLGKCAGVC 188

Query: 172 TGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223
            G+ + + +   +  A   L   +     +I     +A    DY        
Sbjct: 189 CGKETPDVHQARLRNALSTLRIRSWPYPGRI-AIAEEANGLTDYHVINHWFY 239


>gi|325925088|ref|ZP_08186508.1| Excinuclease Cho [Xanthomonas perforans 91-118]
 gi|325544504|gb|EGD15867.1| Excinuclease Cho [Xanthomonas perforans 91-118]
          Length = 263

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 13/195 (6%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P   GVY          LY+GK+ NL+ R+  +      T R   ++ Q   I   
Sbjct: 5   LETLPTTAGVYLFHGQDSELPLYIGKSVNLRVRVMDHFR----TPREASLLRQTRRISVF 60

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSY 121
               ++ A LLE+ +IK ++P +N  LR       I +        +     +       
Sbjct: 61  EMAGDLGAQLLESQLIKSMRPLYNQKLRRVPRQFSIRLYCGD----VSIVHSAERDPAVI 116

Query: 122 ---FGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISS 177
              +G ++S  A ++ +  L     L      + R    RPC    +KRC+G C G  S 
Sbjct: 117 PWLYGLYSSPRAAQEALRRLADRDRLCYGLLGLERATDGRPCFRAMLKRCAGACHGAESL 176

Query: 178 EKYMEFVHEAKKFLS 192
             +   +  A + L 
Sbjct: 177 GDHEMRLRAALEHLE 191


>gi|188991134|ref|YP_001903144.1| nucleotide excision repair endonuclease [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732894|emb|CAP51088.1| putative excinuclease [Xanthomonas campestris pv. campestris]
          Length = 256

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 33/202 (16%)

Query: 6   MPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           MP  PGVY     +    LY+GK+ +L+ R+  +  +         ++ Q  +I+     
Sbjct: 1   MPATPGVYLFHGQSSTLPLYIGKSIHLRNRVMDHFRNAAE----ASLLRQTRSIQVIEMA 56

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSSTIQGS- 120
            ++ A LLE+ +IK L+P +N  LR              +IP    +  +R   +I+ S 
Sbjct: 57  GDIGAQLLESQLIKTLRPLYNQKLR--------------RIPRQFSIRLYRGEVSIEHSG 102

Query: 121 ---------YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGP 170
                     +G ++S  A ++T+  L     L      + R    RPC    +KRCSG 
Sbjct: 103 EIDPAAAPWLYGLYSSPRAAKETLRRLADQHHLCYGLLGLERLQAGRPCFRAMLKRCSGA 162

Query: 171 CTGEISSEKYMEFVHEAKKFLS 192
           C G    + + E +    + L 
Sbjct: 163 CHGAEPLDAHEERLRSVLQHLE 184


>gi|213646019|ref|ZP_03376072.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 168

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 12/146 (8%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS--- 120
             E+ ALLLEA +IK  +P FN  LR ++    + ++++     +      S        
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPN 141

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRS 146
            FG FA+  A  +++ +L     L  
Sbjct: 142 LFGLFANRRAALQSLQNLADEQKLCY 167


>gi|86130357|ref|ZP_01048957.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
 gi|85819032|gb|EAQ40191.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
          Length = 466

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 9/213 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +++PE  G+Y   D AG+++YVGKA N++KR+ S+ +   +  +   +  +   I + VT
Sbjct: 200 QELPETAGIYLFKDRAGKIIYVGKAINIKKRVLSHFYDKKN--KEYLLGQETYQIDYEVT 257

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDD-KSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             E+ ALLLE+  I++  P+FN   +    ++  +   ++  I  L   +       +  
Sbjct: 258 GNELCALLLESEYIEQYFPKFNRAQKMPVSTYAIVSYENRKGILQLAVAKSKYRASAT-D 316

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
             +    A E+ +                 +     C  +++K C G C  E +   Y E
Sbjct: 317 KVYTKAKATERLMELCDTYHLCARY--CGLQATFGQCSHYRLKGCKGVCNDEEAVADYNE 374

Query: 183 FVHEAKKFLSGGNHNLKEKIARNMNQATLKEDY 215
            VH+A       N      + +   +   +  +
Sbjct: 375 RVHQALAAYYSENET---YLIKERGRTEDETAF 404


>gi|284098032|ref|ZP_06385862.1| excinuclease ABC subunit C domain protein [Candidatus
          Poribacteria sp. WGA-A3]
 gi|283830580|gb|EFC34737.1| excinuclease ABC subunit C domain protein [Candidatus
          Poribacteria sp. WGA-A3]
          Length = 100

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 5  QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTVT 63
           +P  PGVY     +G++LY+GKA  L+KR++SY+H       +I  +I    ++R+ V 
Sbjct: 11 DVPSDPGVYFFRGTSGQILYIGKAKCLRKRVRSYLHKVKKRPSKIKRLIRWTTDVRYQVC 70

Query: 64 CTEVEALLLEANMIKRLKPRFNILLR 89
           +E EAL LE+ +I+  +P +N  ++
Sbjct: 71 RSEQEALFLESRLIQEYQPSYNTAMK 96


>gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
 gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
          Length = 463

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 16/283 (5%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +PE  GVY   +  G ++Y+GK+ N++KR+ S+   N +  +     SQ+  I + +T
Sbjct: 192 QALPEATGVYYFHNEEGDIIYIGKSINIKKRVGSHFTQNLNNRKSIDFKSQVAGISYELT 251

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK--IPALYKHR---DSSTIQ 118
            +E+ ALLLE++ IKR  P+FN   R  + F  I  T  H+     LY  R   + +   
Sbjct: 252 GSELLALLLESDEIKRHHPKFNRAQRRTRYFWGIY-TRHHRNGYLGLYAARLETEPNKTP 310

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
            +  G   S     + + S  R + L      +++ +T  C  +QIK+C G C GE + E
Sbjct: 311 LTMCG---SGHTAREILYSKVREYQLCMKLCGLYQTKTS-CFDYQIKQCKGACIGEETPE 366

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            Y E V EA    +  +      + +  N+       E +I+  ++ + L       D  
Sbjct: 367 DYNERVEEAIATFNRYSLRTFLVLGKGRNKN------EQSIVVIEKGSYLGFGYVDKDLT 420

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281
               +    Y       +      +G  +      +  + +  
Sbjct: 421 IASFEEAKQYIKPYKDNLDVQKIIYGYLKQHKWSGVMEEKQEE 463


>gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
 gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
          Length = 483

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 2/192 (1%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +++P  PGVY+       +LYVGK+ N+ +R+ S+   ++++ R   +   +  + +T 
Sbjct: 202 LQELPRGPGVYRFYGENDALLYVGKSTNIAQRVASHFSGDHNSTRGVRISESLRRVDWTE 261

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILI-TDKHKIPALYKHRDSSTIQ-GS 120
           T  E+ ALLLE   IK L+P FN   R  K+   I + T+          R+    + G 
Sbjct: 262 TAGELGALLLELKQIKGLRPLFNRRSRAAKNLVSIELTTNAQGYLQARLIREIDPGRLGD 321

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           Y+G F S    E+ + S+     L +    +    + PC    + RC G C G     +Y
Sbjct: 322 YYGLFRSKRDAERALASIAAKNELCNRLLGLEPEHSGPCFQRALGRCQGACEGREDPLRY 381

Query: 181 MEFVHEAKKFLS 192
              +  A   L 
Sbjct: 382 NLRMQIAFHSLR 393


>gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803]
 gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803]
          Length = 507

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 121/291 (41%), Gaps = 19/291 (6%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E++P   GVY   D  GR LY+GKA N++ RIKS+      ++R   ++ +  +I + +T
Sbjct: 197 EKLPITTGVYFFKDKDGRPLYIGKAKNIKSRIKSHFQ--EKSNRKYKLMQETYSIDYELT 254

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDK--SFPYILITDKHK---IPALYKHRDSSTIQ 118
             E+ ALL E+ +I +  P++N   +  K  S PY  +T  H    I     H++     
Sbjct: 255 GNELLALLRESELILKFFPKYN---KAQKKVSRPY-TLTSYHNQKGIEQFALHKNKIA-P 309

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
            S+   +   +A++      +             +   + C  ++I  C G C GE+S E
Sbjct: 310 VSWMKFYTREEAIKFMEFLCEEFQLCP--KYCGLQTGVKICDHYKITNCGGVCKGEVSKE 367

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
           +Y   V +A +++   + +    + +   +      Y    +++ + A   +I   +D  
Sbjct: 368 EYNARVEKAIEYIERYDDSCL-LLEKGRTREEKSFIY----LNKGKYAGYGYIGPSDDFN 422

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYF 289
           +       L   KN +        + + +   T    ++ E     ++ + 
Sbjct: 423 HPEEFKNFLTPAKNSSYADRIVSRYLKIKRNFTKISLSNDEEEPEDLVEHT 473


>gi|305665063|ref|YP_003861350.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88709815|gb|EAR02047.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 461

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 90/195 (46%), Gaps = 4/195 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P  PG+Y   +  G+++YVGKA N++KR+ S+ +  +   +   M  +  +I + ++
Sbjct: 193 DNLPTVPGIYYFKNEKGKIIYVGKAINIKKRVLSHFY--DKATKEIQMCEETTDIDYELS 250

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
            +++ ALL+E+  IK   P +N   + +    Y + T + +   ++   +   +  +   
Sbjct: 251 GSDLVALLMESAAIKHHYPEYNRAQKRNVQR-YGIFTYEDRNGIMHLAFNKIKMAPNPVA 309

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEF 183
              +       +  + ++F L        +     C  ++IK+C G C G  +SE Y   
Sbjct: 310 ILYNTTDCRLYLEEICKSFSLC-AKFCHLQENVTTCSHYRIKQCDGICRGIETSEVYNNK 368

Query: 184 VHEAKKFLSGGNHNL 198
           V+ A  ++   N N 
Sbjct: 369 VNMALSYIKDSNENF 383


>gi|91216470|ref|ZP_01253436.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC
           700755]
 gi|91185264|gb|EAS71641.1| DNA polymerase III, epsilon subunit [Psychroflexus torquis ATCC
           700755]
          Length = 454

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 6/196 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P   GVY   +  G ++YVGK+ +++KR   +  S+    +   +    +++ +  T
Sbjct: 191 DDLPNAVGVYYFSNKEGDIIYVGKSNDIKKRANQHFISDAQ--KSKQIQEYTSSVDYEKT 248

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             E+ ALL E   IK+LKP++N  L+ D  +    +  D +    L   +  S     Y 
Sbjct: 249 GNELMALLKENQSIKKLKPKYNSALKKDLFTHGLYMFEDHNGYFNLTVSKLDSKKD--YV 306

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
             F +    +  +     T+ L      + + +   C  + IK+C G C  E  +  Y  
Sbjct: 307 TSFTNYQQGKAFLERALETYHLCQKLTGLHKTKE-ACFNYTIKKCDGACIKEEDAVSYNS 365

Query: 183 FVHEAKKFLSGGNHNL 198
            V +  +F +  + N+
Sbjct: 366 RVVKLIEFYNYKDKNM 381


>gi|295133359|ref|YP_003584035.1| exonuclease domain-containing protein [Zunongwangia profunda
           SM-A87]
 gi|294981374|gb|ADF51839.1| exonuclease domain-containing protein [Zunongwangia profunda
           SM-A87]
          Length = 475

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 14/194 (7%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E++P   GVY   D  G  LY+GKA N++ RIKS+      ++R   ++    +I + +T
Sbjct: 197 EKLPSTTGVYFFKDKDGIPLYIGKAKNIKSRIKSHFQ--EKSNRKYSLMQATYSIDYELT 254

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDK--SFPYILITDKHK---IPALYKHRDSSTIQ 118
            +E+ ALL E+++I +  P+FN   +  K  S PY  +T  H    I     H++  +  
Sbjct: 255 GSELLALLRESSLILKYFPKFN---KAQKKVSRPY-TLTSYHNQKGIEQFVIHKNKVS-P 309

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
            S+   +   +A++      Q             +     C  ++I  CSG C GEI   
Sbjct: 310 VSWMKFYTREEAIKFLEFLCQEFRLCP--KYCGLQAGVAECSHYKINDCSGMCRGEIEVT 367

Query: 179 KYMEFVHEAKKFLS 192
           +Y + V  A  ++ 
Sbjct: 368 EYNQRVSRAIDYIH 381


>gi|163788571|ref|ZP_02183016.1| DNA polymerase III, epsilon subunit [Flavobacteriales bacterium
           ALC-1]
 gi|159875808|gb|EDP69867.1| DNA polymerase III, epsilon subunit [Flavobacteriales bacterium
           ALC-1]
          Length = 398

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 97/285 (34%), Gaps = 32/285 (11%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS-NNHTHRITHMISQINNIRFTV 62
           +++P   GVY + +  G ++Y+GK+ N++KRI  +  + ++ + +I  ++S +    +  
Sbjct: 132 DELPSETGVYYIHNENGEIIYIGKSKNIKKRITQHFTNTSSKSKKIQKLVSAVT---YEK 188

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLR------------DDKSFPYILITDKHKIPALYK 110
           T +E+ ALL E+  IK  KP FN  LR            D   +  + I           
Sbjct: 189 TGSELAALLKESAEIKANKPIFNRALRRTIFTHALYSFIDANGYINLKID---------- 238

Query: 111 HRDSSTIQGSY-FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169
                          F++  + +  +      + L      ++  ++  C  + +K C G
Sbjct: 239 ----KADGNESPITTFSTRASGKHFMFKNVDDYKLCQKLTGLYDTKSS-CFKYDVKECDG 293

Query: 170 PCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALS 229
            C  E   E Y + +       S  N N+                 E  I        L+
Sbjct: 294 ACIEEELPENYNKRISLFISKYSYENKNMLLIDKGRDVHEKSVFLIEKGIFRGFGFFDLN 353

Query: 230 HIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFL 274
           H  N+ + + + +       +           +            
Sbjct: 354 HQINNKEILESLITPMENNRDTQHIIQSYMRKNRRLKIVELKNNP 398


>gi|88706144|ref|ZP_01103851.1| excinuclease ABC subunit C [Congregibacter litoralis KT71]
 gi|88699538|gb|EAQ96650.1| excinuclease ABC subunit C [Congregibacter litoralis KT71]
          Length = 416

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 4/168 (2%)

Query: 7   PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           P CPGVY+       +LY+GK+ ++  R+ S+        R   M+S ++ I   +T  E
Sbjct: 99  PRCPGVYRFYSEEDTLLYIGKSIDIGTRLNSHFADAREPGRQQRMMSAVHRIDCQLTAGE 158

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK-HKIPALYKHRDSSTIQG--SYFG 123
           V ALL+E   IK   P +N   R  +      + +       +         +   S FG
Sbjct: 159 VGALLIENAAIKAETPLYNRRQRRSRKLWTQRLQEDVEGFLQVIPSDFCPAGERIESVFG 218

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
            F S   ++ ++ SL R   L        R R  PC   Q+ RC G C
Sbjct: 219 LFRSRKHIDNSLRSLARDNGLCLRMLGAERGRG-PCFGHQVGRCHGAC 265


>gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 463

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 8/208 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +PE  GVY   +    V+YVGK+ N+QKRI  +    + T +   +  Q+++I F VT 
Sbjct: 197 SLPEACGVYYFHNDQNEVIYVGKSINIQKRIAEHF--ADKTEKARKLQEQVHDISFEVTG 254

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYI--LITDKHKIPALYKHRDSSTIQGS-- 120
           +E+ AL+ E+  IKRL P  N   R  +SFPY+     ++            +  +    
Sbjct: 255 SELLALIHESFEIKRLLPGINRAQR-TRSFPYMLHAYRNEQGYLCFGIVETVAKTRRKLD 313

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
               F  + + +  ++S +  F L           T PC  + +K+C+G C G  S E Y
Sbjct: 314 IIAEFPKISSAKGRLSSAREKFGLC-EKLLNLSPHTGPCFHYHLKQCTGACVGIESPEMY 372

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQ 208
            E   +AK++L     +    I +   +
Sbjct: 373 NERAQQAKEYLCRIFEHNFFIIDQGREE 400


>gi|254515581|ref|ZP_05127641.1| putative Nuclease subunit Cho of the excinuclease complex [gamma
           proteobacterium NOR5-3]
 gi|219675303|gb|EED31669.1| putative Nuclease subunit Cho of the excinuclease complex [gamma
           proteobacterium NOR5-3]
          Length = 355

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 94/265 (35%), Gaps = 7/265 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + +  P CPGVY+       +LY+GK+ ++  R+KS+        R   M++ ++ +   
Sbjct: 42  ALDAAPRCPGVYRFYSEDDALLYIGKSIDIATRLKSHFADAREPGRQQRMMTAVDRVDCQ 101

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK-HKIPALYKHRDSSTIQG- 119
           +T  EV ALL+E   IK   P +N   R  +      + +       +         +  
Sbjct: 102 LTAGEVGALLIENAAIKAEAPLYNRRQRRSRKLWTQRLQEDLEGFLQVLPSDFCPAGERI 161

Query: 120 -SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
            S FG F S   ++ ++ SL R   L        R R  PC   QI RC G C G+ S +
Sbjct: 162 ESVFGLFRSRRHIDDSLRSLAREHGLCLRMLGAERGRG-PCFQHQIGRCGGACAGKESPQ 220

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
            +   +  A +            +     +  + +  E A   + R         H+ S 
Sbjct: 221 DHNARLLAALEQQRIAAWPFAGPVLLEEERVAVGKSSEQAQALQPRRQF---HLLHHWSY 277

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHF 263
               +                F   
Sbjct: 278 LGTYERRDRARQAAKRDCDLIFDRD 302


>gi|331657777|ref|ZP_08358739.1| excinuclease cho [Escherichia coli TA206]
 gi|331056025|gb|EGI28034.1| excinuclease cho [Escherichia coli TA206]
          Length = 141

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
            +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  DLPTRPGVYLFHGESDTMPLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKS 93
             E+ ALLLEA +IK  +P FN  LR ++ 
Sbjct: 86  AGEIGALLLEARLIKEQQPLFNKRLRRNRQ 115


>gi|61680591|pdb|1YCZ|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease
          Domain Of Uvrc From Thermotoga Maritima
 gi|61680592|pdb|1YD0|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease
          Domain Of Uvrc From Thermotoga Maritima Bound To Its
          Catalytic Divalent Cation: Manganese
 gi|61680593|pdb|1YD1|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease
          Domain Of Uvrc From Thermotoga Maritima Bound To Its
          Catalytic Divalent Cation: Magnesium
          Length = 96

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 7  PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
          PE PGVY   +  G  +Y+GKA  L  R++SY+  N  T ++  +  + + +   V   E
Sbjct: 13 PEEPGVYIFKNK-GVPIYIGKAKRLSNRLRSYL--NPQTEKVFRIGEEADELETIVVMNE 69

Query: 67 VEALLLEANMIKRLKPRFNILLRD 90
           EA +LEAN+IK+ +P++N+ L+D
Sbjct: 70 REAFILEANLIKKYRPKYNVRLKD 93


>gi|332520671|ref|ZP_08397133.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332044024|gb|EGI80219.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 444

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 28/179 (15%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P   G+Y   +  G+V+YVGKA +++KR+ S+ +S     +   M+ +  +I F ++ 
Sbjct: 192 NLPNSTGIYFFKNKKGKVVYVGKAKDIKKRVLSHFYSKAQ--KSLDMVRETAHIDFELSG 249

Query: 65  TEVEALLLEANMIKRLKPRFN-ILLRDDKSFPY-----------ILITDKHKIPALYKHR 112
           +E  ALL+E   IK   P++N +  +  K F             I I +    P      
Sbjct: 250 SEFIALLMEDAAIKHHYPQYNKVAKKSPKGFSLFSYQDRNDIMHIAINNSKATPKPIIT- 308

Query: 113 DSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
                       F S+      +  +   F L        +     C  + IK C+G C
Sbjct: 309 ------------FYSLREARLYLEQICDEFNLCP-KFCHLQENVSTCSHYLIKNCNGIC 354


>gi|260061966|ref|YP_003195046.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
           HTCC2501]
 gi|88783528|gb|EAR14699.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata
           HTCC2501]
          Length = 456

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 16/200 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           Q+PE PG+Y   D  G V+YVGKA ++++R   + +  +   R   +  + + I F ++ 
Sbjct: 194 QLPEAPGIYFFKDSKGNVIYVGKAIDIRQRALGHFYDTSDRER--RLCRETSQIDFELSG 251

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDK------SFPYILITDKHKIPALYKHRDSSTIQ 118
           +++ ALL+EA  IK+  P++N   ++ +      S+P        +   ++   +     
Sbjct: 252 SDLVALLMEAAAIKKYFPKYNRAQKNIRPAFGLFSYP-------DRNGVIHLAFNRLARG 304

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
                 F S       +  L   F L        +     C  F++ +C+G C+G+ + E
Sbjct: 305 QQALRVFFSQTDARLFLEQLCTEFGLC-AKFCHLQEGVATCSHFRVPQCAGICSGKQTVE 363

Query: 179 KYMEFVHEAKKFLSGGNHNL 198
            Y + V +A + L  G ++L
Sbjct: 364 AYNKKVRDALQSLEPGGNHL 383


>gi|213421439|ref|ZP_03354505.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
          Length = 77

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query: 3  SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           + +   PGVY+M D  G V+YVGKA +L+KR+ SY  SN  + +   +++QI +I  TV
Sbjct: 11 LKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQHIDVTV 70

Query: 63 TCTEVEA 69
          T TE EA
Sbjct: 71 THTETEA 77


>gi|119503731|ref|ZP_01625813.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2080]
 gi|119460239|gb|EAW41332.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2080]
          Length = 305

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 14/174 (8%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P   GVY+       +LY+GK+ +++ RI ++        R   ++ Q+ +I  + T  
Sbjct: 20  LPSYSGVYRFFGADEALLYIGKSIDIKSRINAHYQEGRKVGRHQRIMGQVTHIDCSPTAG 79

Query: 66  EVEALLLEANMIKRLKPRFNILLRDDKSFPYILITD-KHKIPA-------LYKHRDSSTI 117
           EV ALL E   IK   P +N   R  K    + +   +H           L   R   + 
Sbjct: 80  EVGALLTENAAIKAETPLYNRRQRRVKKLWTLHLKLSEHGFLQPSAADFLLESDRAVDS- 138

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPC 171
               +G + +   +E T+    R   L      + R R  PC  +Q+ RC G C
Sbjct: 139 ----YGLYQNKRHIESTLQRHARDHGLCLRCMGMDRGRG-PCFQYQLGRCDGAC 187


>gi|300898469|ref|ZP_07116807.1| GIY-YIG catalytic domain protein [Escherichia coli MS 198-1]
 gi|300357854|gb|EFJ73724.1| GIY-YIG catalytic domain protein [Escherichia coli MS 198-1]
          Length = 249

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + ++
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L           R R C    +KRC+G C G+ S E++   + ++ + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N  +     +   + + +   
Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223


>gi|289829378|ref|ZP_06546990.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 140

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 5/99 (5%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30  EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 85

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK 102
             E+ ALLLEA +IK  +P FN  LR ++    + ++++
Sbjct: 86  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ 124


>gi|320181228|gb|EFW56147.1| nucleotide excision repair endonuclease [Shigella boydii ATCC 9905]
          Length = 249

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + ++
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L           R R C    +KRC+G C G+ S E++   + ++ + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N  +     +   + + +   
Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGY 223


>gi|300930781|ref|ZP_07146153.1| GIY-YIG catalytic domain protein [Escherichia coli MS 187-1]
 gi|300461339|gb|EFK24832.1| GIY-YIG catalytic domain protein [Escherichia coli MS 187-1]
          Length = 249

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + ++
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L           R R C    +KRC+G C G+ S E++   + ++ + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N  +     +   + + +   
Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223


>gi|213418218|ref|ZP_03351284.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 114

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 5   QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 22  EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQARRISWICT 77

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT 100
             E+ ALLLEA +IK  +P FN  LR ++    + ++
Sbjct: 78  AGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLS 114


>gi|323186242|gb|EFZ71594.1| hypothetical protein ECOK1357_0395 [Escherichia coli 1357]
          Length = 249

 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + S+
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQSI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L           R R C    +KRC+G C G+ S E++   + ++ + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N  +     +   + + +   
Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGY 223


>gi|300818382|ref|ZP_07098592.1| GIY-YIG catalytic domain protein [Escherichia coli MS 107-1]
 gi|300529022|gb|EFK50084.1| GIY-YIG catalytic domain protein [Escherichia coli MS 107-1]
 gi|320188428|gb|EFW63090.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7
           str. EC1212]
 gi|320197925|gb|EFW72533.1| nucleotide excision repair endonuclease [Escherichia coli EC4100B]
 gi|323175185|gb|EFZ60799.1| hypothetical protein ECLT68_0282 [Escherichia coli LT-68]
 gi|326342108|gb|EGD65889.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7
           str. 1044]
 gi|326343660|gb|EGD67422.1| nucleotide excision repair endonuclease [Escherichia coli O157:H7
           str. 1125]
 gi|333003741|gb|EGK23277.1| hypothetical protein SFVA6_2386 [Shigella flexneri VA-6]
 gi|333018290|gb|EGK37589.1| hypothetical protein SFK304_2085 [Shigella flexneri K-304]
          Length = 249

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + S+
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQSI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L           R R C    +KRC+G C G+ S E++   + ++ + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N  +     +   + + +   
Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223


>gi|300823202|ref|ZP_07103335.1| GIY-YIG catalytic domain protein [Escherichia coli MS 119-7]
 gi|300904598|ref|ZP_07122435.1| GIY-YIG catalytic domain protein [Escherichia coli MS 84-1]
 gi|301303968|ref|ZP_07210086.1| GIY-YIG catalytic domain protein [Escherichia coli MS 124-1]
 gi|331668429|ref|ZP_08369277.1| excinuclease cho [Escherichia coli TA271]
 gi|300403511|gb|EFJ87049.1| GIY-YIG catalytic domain protein [Escherichia coli MS 84-1]
 gi|300524356|gb|EFK45425.1| GIY-YIG catalytic domain protein [Escherichia coli MS 119-7]
 gi|300840765|gb|EFK68525.1| GIY-YIG catalytic domain protein [Escherichia coli MS 124-1]
 gi|315257453|gb|EFU37421.1| GIY-YIG catalytic domain protein [Escherichia coli MS 85-1]
 gi|331063623|gb|EGI35534.1| excinuclease cho [Escherichia coli TA271]
          Length = 249

 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + S+
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQSI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L           R R C    +KRC+G C G+ S E++   + ++ + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N  +     +   + + +   
Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223


>gi|227495992|ref|ZP_03926303.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
           15434]
 gi|226834480|gb|EEH66863.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
           15434]
          Length = 547

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 49/83 (59%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVYQ L  AG+VLYVG A +L++R++SY  +     R+T M+     +R   
Sbjct: 229 AQDLPTSPGVYQFLSAAGQVLYVGSAVDLRRRVRSYFTAAEKRTRVTQMLDTTVQVRAIP 288

Query: 63  TCTEVEALLLEANMIKRLKPRFN 85
           T TEVEA + E  +I  L P  N
Sbjct: 289 TPTEVEARVRELRLIAELDPPVN 311


>gi|300994395|ref|ZP_07180900.1| GIY-YIG catalytic domain protein [Escherichia coli MS 45-1]
 gi|301050920|ref|ZP_07197770.1| GIY-YIG catalytic domain protein [Escherichia coli MS 185-1]
 gi|300297407|gb|EFJ53792.1| GIY-YIG catalytic domain protein [Escherichia coli MS 185-1]
 gi|300406241|gb|EFJ89779.1| GIY-YIG catalytic domain protein [Escherichia coli MS 45-1]
 gi|315286408|gb|EFU45843.1| GIY-YIG catalytic domain protein [Escherichia coli MS 110-3]
 gi|324007101|gb|EGB76320.1| GIY-YIG catalytic domain protein [Escherichia coli MS 57-2]
          Length = 249

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 88/236 (37%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + ++
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L           R R C    +KRC+G C G+ S + +   + ++ + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDDHALRLRQSLERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N        +   + + +   
Sbjct: 174 W------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAGFDHDGY 223


>gi|332086016|gb|EGI91180.1| hypothetical protein SD15574_4005 [Shigella dysenteriae 155-74]
          Length = 249

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSINIRSRVLSHLRTPDE----ADMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + ++
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L           R R C    +KRC+G C G+ S E++   + ++ + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N  +     +   + + +   
Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGY 223


>gi|319954735|ref|YP_004166002.1| excinuclease abc c subunit domain protein [Cellulophaga algicola
           DSM 14237]
 gi|319423395|gb|ADV50504.1| Excinuclease ABC C subunit domain protein [Cellulophaga algicola
           DSM 14237]
          Length = 466

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             +++P+ PG+Y+  +   +V+YVGKA +++KR+ S+  +   T +   + +    I F 
Sbjct: 196 QLDRLPKVPGIYKFQNEDKKVIYVGKAKDIKKRVLSHFTAT--TEKELLLCTATYFIDFE 253

Query: 62  VTCTEVEALLLEANMIKRLKPRFN-ILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS 120
              +E+ ALL EA++I +L P +N I  +   ++  + I +K  I  L   R       +
Sbjct: 254 PMGSELVALLREADLITKLDPYYNYIQKKKHITYLIVPIRNKKGILQLKVERRPFQHTPT 313

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
               F       + +  L   F L      V   +T+ C       C G C  E + E Y
Sbjct: 314 EI--FLKRSLAIERLAQLTEKFELCPSFTGVHNLKTK-CSTISSSSCKGICREEEAIEAY 370

Query: 181 MEFVHEAKKFLSGGNHNL 198
            + V +A   L+  N N 
Sbjct: 371 NDRVTQALDHLNNENENF 388


>gi|312966941|ref|ZP_07781159.1| excinuclease cho [Escherichia coli 2362-75]
 gi|312288405|gb|EFR16307.1| excinuclease cho [Escherichia coli 2362-75]
          Length = 249

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + ++
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFATRRAALQALQTI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L           R R C    +KRC+G C G+ S E++   + +A + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHARRLRQALERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N  +     +   + + +   
Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223


>gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 454

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 7/196 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           EQMP   G+Y M D  G +L++GK+ N++KR+  +   +    +   +  +   I F  T
Sbjct: 191 EQMPSETGLYYMHDKKGEILFIGKSTNIKKRVNQHFTKDG--AKARQLQKETKKITFEKT 248

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSF-PYILITDKHKIPALYKHRDSSTIQGSYF 122
            +E+ ALL E   +++  P++N+  R  + +  Y+   +                     
Sbjct: 249 GSELVALLKENEELRKNHPKYNVNKRPKRLYGLYLC-ANDQGYKYFNIA--VKKKDKECI 305

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
             F S    +  +  +   F L +    +   +  PC       C G C G+ + E Y  
Sbjct: 306 TSFKSYVGAQNFLQKITDEFQLCTKIGDIPSSKI-PCSDQTEGNCHGACIGQENVESYNS 364

Query: 183 FVHEAKKFLSGGNHNL 198
            ++      S    N+
Sbjct: 365 RINTILDKFSLAKKNI 380


>gi|300987591|ref|ZP_07178263.1| GIY-YIG catalytic domain protein [Escherichia coli MS 200-1]
 gi|300306071|gb|EFJ60591.1| GIY-YIG catalytic domain protein [Escherichia coli MS 200-1]
 gi|324011478|gb|EGB80697.1| GIY-YIG catalytic domain protein [Escherichia coli MS 60-1]
          Length = 249

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 87/236 (36%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + ++
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L             R C    +KRC+G C G+ S + +   + ++ + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSHGRACFRSALKRCAGACCGKESHDDHALRLRQSLERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N        +   + + +   
Sbjct: 174 W------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAGFDHDGY 223


>gi|61680594|pdb|1YD2|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease
          Domain Of Uvrc From Thermotoga Maritima: Point Mutant
          Y19f Bound To The Catalytic Divalent Cation
          Length = 96

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 7  PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
          PE PGV+   +  G  +Y+GKA  L  R++SY+  N  T ++  +  + + +   V   E
Sbjct: 13 PEEPGVFIFKNK-GVPIYIGKAKRLSNRLRSYL--NPQTEKVFRIGEEADELETIVVMNE 69

Query: 67 VEALLLEANMIKRLKPRFNILLRD 90
           EA +LEAN+IK+ +P++N+ L+D
Sbjct: 70 REAFILEANLIKKYRPKYNVRLKD 93


>gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 502

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 87/258 (33%), Gaps = 48/258 (18%)

Query: 5   QMPECPGVYQMLDIAG-----------------------------------------RVL 23
            +P+ PGVY      G                                           L
Sbjct: 202 DLPDTPGVYLFYGERGGESSQLGGNDEADAEAEADPLGPGRARTGARDRKRHAPLQDLPL 261

Query: 24  YVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPR 83
           Y+GK+  L+ R+ S+  +++ + R   +  Q+  I +  T  E+ ALL EA ++KRL+P 
Sbjct: 262 YIGKSTRLRSRVLSHFAADHSSDRELSLSQQVRRIEWIATAGEIGALLKEAELVKRLQPT 321

Query: 84  FNILLRDDKSFPYILITDK--HKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
            N  LR ++      +          L     +    G     +G F +       + +L
Sbjct: 322 HNRQLRRNRELCTWRLATDIVGDW-RLELVHAADLDFGRRDDLYGFFRTRREATNRLRAL 380

Query: 139 QRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
            R   L      + +      C  FQ+KRC G C G  S + +   + EA   L   +  
Sbjct: 381 ARDHALCPPLLGLEKPPQGARCFDFQLKRCRGACHGGESPQAHALRLIEALHALKVEHWT 440

Query: 198 LKEKIARNMNQATLKEDY 215
               +     +A    D 
Sbjct: 441 WPGPVGLREGEAIHVVDG 458


>gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
 gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
          Length = 529

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++  P  PGVY         LY+G A +L++R+  Y +  +   +IT M+SQ   +    
Sbjct: 217 ADGAPHTPGVYVFRSRNDDPLYIGTALDLRRRLLQYFNGTDSRRKITEMVSQAERVEIIE 276

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
                 A + EA +I  L+P +N  
Sbjct: 277 CPHGFAAEIREARLISALRPPYNRQ 301


>gi|61680596|pdb|1YD4|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease
          Domain Of Uvrc From Thermotoga Maritima: Point Mutant
          Y29f Bound To Its Catalytic Divalent Cation
          Length = 96

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 7  PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
          PE PGVY   +  G  +++GKA  L  R++SY+  N  T ++  +  + + +   V   E
Sbjct: 13 PEEPGVYIFKNK-GVPIFIGKAKRLSNRLRSYL--NPQTEKVFRIGEEADELETIVVMNE 69

Query: 67 VEALLLEANMIKRLKPRFNILLRD 90
           EA +LEAN+IK+ +P++N+ L+D
Sbjct: 70 REAFILEANLIKKYRPKYNVRLKD 93


>gi|61680595|pdb|1YD3|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease
          Domain Of Uvrc From Thermotoga Maritima: Point Mutant
          Y43f Bound To Its Catalytic Divalent Cation
          Length = 96

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 7  PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
          PE PGVY   +  G  +Y+GKA  L  R++S++  N  T ++  +  + + +   V   E
Sbjct: 13 PEEPGVYIFKNK-GVPIYIGKAKRLSNRLRSFL--NPQTEKVFRIGEEADELETIVVMNE 69

Query: 67 VEALLLEANMIKRLKPRFNILLRD 90
           EA +LEAN+IK+ +P++N+ L+D
Sbjct: 70 REAFILEANLIKKYRPKYNVRLKD 93


>gi|332292966|ref|YP_004431575.1| Excinuclease ABC C subunit domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171052|gb|AEE20307.1| Excinuclease ABC C subunit domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 453

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P+  GVY   +    V+YVGKA +L+KR+ S+  S     +   +  +   + +  T
Sbjct: 194 DHLPKTSGVYYFRNATDEVIYVGKAVDLKKRVISHFKSRLVFEKT--LCKETVAVEYVET 251

Query: 64  CTEVEALLLEANMIKRLKPRFNIL 87
             E+ ALL E+  IK+L P +N  
Sbjct: 252 GNELIALLKESAEIKQLAPTYNSQ 275


>gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 466

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + E +P   GVY       + LY+GKA N++KR+  +   NN   R    ++ I  I F 
Sbjct: 199 NLEHLPTTSGVYFFKSKDNKFLYIGKAINIRKRVNDHFAGNNAGQRRQDFLNDIYTIDFL 258

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLR 89
            T  E+ ALL E   I+R  P++N  L+
Sbjct: 259 ETGNELMALLTEQEYIRRYWPKYNRALK 286


>gi|303288766|ref|XP_003063671.1| exinuclease ABC subunits B and C-containing protein [Micromonas
            pusilla CCMP1545]
 gi|226454739|gb|EEH52044.1| exinuclease ABC subunits B and C-containing protein [Micromonas
            pusilla CCMP1545]
          Length = 1800

 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 11/115 (9%)

Query: 5    QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN--NHTHRITHMISQINNIRFTV 62
             MP   G+Y+ L   G VLYVGKA NL+ R + Y+       + R   + ++  ++   +
Sbjct: 1026 DMPAKTGIYRWLAEDGEVLYVGKAKNLRDRTRGYLSPALLERSPRHRTLAAKARSVDNVL 1085

Query: 63   T-CTEVEALLLEANMIKRLKPRFNILLRDDKSFP-----YILITDKHKIPALYKH 111
            T   E +AL LEA +I+R KP  N+LL   K  P      I+ T   ++P  +  
Sbjct: 1086 TPGGESDALALEARLIERFKPPLNVLL---KHAPRPDAALIVATISDEVPRFFVV 1137



 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 94/294 (31%), Gaps = 77/294 (26%)

Query: 311  ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370
               L   +  +   Y         G    +   A  NA  S  +  +   + + + +   
Sbjct: 1489 PPPLNSKTNKQPRRYVKHGIDLPPGLPTSLASLARANAVESARRTANVVAASRGLARVLR 1548

Query: 371  ---------KKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPN- 420
                        +     + IE  D SH+ G S    +V   +       +R++ L    
Sbjct: 1549 LPIASDAASSSSSSDVAIRTIEGVDVSHLAGSSTAASVVSFVDGRADNAGHRRYELKNTG 1608

Query: 421  ----DVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL 476
                D+   DD A +   +   + ++                     PD++++DGGK QL
Sbjct: 1609 TGGGDIAPGDDPAAIYAAV---YKRV-------------GSVRSKPLPDLLLIDGGKAQL 1652

Query: 477  SAAQGVLKKLNVE-------------------------NRITIISIAKGPKRSAGMEKFF 511
            +AA   L+  NVE                          R+ + S++KG  R +G E  +
Sbjct: 1653 AAAAEALRARNVEIVNLQGVGVGVGGGQDARASGDSTRPRVALASLSKG--RLSGEESVY 1710

Query: 512  VK-----KGEALVLNMR---------------DPILYFIQRLRDEAHRFAITTH 545
            V       G+                      DP +  ++ +RDE+H  A+  H
Sbjct: 1711 VPAAAGENGDGFAAVRVRAGAAEDVAGAKQNLDPGMVLLRLVRDESHAVALGAH 1764


>gi|61680597|pdb|1YD5|A Chain A, Crystal Structure Of The Giy-Yig N-Terminal Endonuclease
          Domain Of Uvrc From Thermotoga Maritima: Point Mutant
          N88a Bound To Its Catalytic Divalent Cation
          Length = 96

 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 7  PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
          PE PGVY   +  G  +Y+GKA  L  R++SY+  N  T ++  +  + + +   V   E
Sbjct: 13 PEEPGVYIFKNK-GVPIYIGKAKRLSNRLRSYL--NPQTEKVFRIGEEADELETIVVMNE 69

Query: 67 VEALLLEANMIKRLKPRFNILLRD 90
           EA +LEAN+IK+ +P++ + L+D
Sbjct: 70 REAFILEANLIKKYRPKYAVRLKD 93


>gi|300917695|ref|ZP_07134344.1| GIY-YIG catalytic domain protein [Escherichia coli MS 115-1]
 gi|300415096|gb|EFJ98406.1| GIY-YIG catalytic domain protein [Escherichia coli MS 115-1]
          Length = 147

 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 12/154 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + S+
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQSI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPC 171
                L           R R C    +KRC+G C
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGAC 147


>gi|146301193|ref|YP_001195784.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146155611|gb|ABQ06465.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 453

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 28/258 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           QMP   GVY +    G ++Y+GK+ N++KR+  +      T +   + +++  I +  T 
Sbjct: 192 QMPAKTGVYYIYKEDGTLIYIGKSQNIKKRVNQHFTG--ITTKSKRIQAEVFTITYDETG 249

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKS-FP-----------YILITDKHKIPALYKHR 112
           +E+ ALL E+  +K  +PR+N   +  KS FP           YI +        L K  
Sbjct: 250 SELIALLKESQEVKVNRPRYNRSQK--KSVFPVALYAEKDSNGYINL-------RLEKAD 300

Query: 113 DSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT 172
                       FAS+   +  +      + L      +++ + + C  ++IK C G C 
Sbjct: 301 GRKKE----ITSFASLQEGKNALFRFTSKYHLCQKLTGLYQTK-KECFQYKIKECDGACI 355

Query: 173 GEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQ 232
           GE++ E Y   V +     S  N ++                 E+ I        L++  
Sbjct: 356 GEVTPEVYNLRVQQFISENSFENKSIVLIDRGRNVNERSAILIENGIYKGYAYYDLNYQI 415

Query: 233 NHNDSIYNRMDCFSLYHN 250
            + D + N +       +
Sbjct: 416 TNIDILKNILVPMQHNRD 433


>gi|315299804|gb|EFU59044.1| GIY-YIG catalytic domain protein [Escherichia coli MS 16-3]
          Length = 249

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 87/236 (36%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ ALLLEA +IK  +
Sbjct: 2   PLYIGKSINIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGALLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                F  FA+  A  + + ++
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFSLFANRRAALQALQTI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L           R R C    +KRC+G C G+ S + +   + ++ + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHDDHALRLRQSLERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N        +   + + +   
Sbjct: 174 W------KGAVALKEQHPEMTQYHIIQNWLWLGAVNSLKEATTLIRAPAGFDHDGY 223


>gi|42521879|ref|NP_967259.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100]
 gi|39574409|emb|CAE77913.1| excinuclease ABC subunit C [Bdellovibrio bacteriovorus HD100]
          Length = 511

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 10/126 (7%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM--HSNNHTHRITHMISQINNIRFTV 62
            +P+ PGVY+ +   G +LYVGKA +L  R+ SY        + ++  M++Q  ++  T 
Sbjct: 195 NLPKVPGVYRYVSQWGEILYVGKATSLHDRVNSYFRGQKGRDSFKL-EMLTQAYDLIVTE 253

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
             T +E+ LLE + IK+  PR+NI L+  +     L+   H   ++              
Sbjct: 254 CRTPLESALLETDEIKKYNPRYNISLKAGERG---LVFFSHDFTSMS----PEQDDQHSI 306

Query: 123 GPFASV 128
           GPF + 
Sbjct: 307 GPFTNA 312


>gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
 gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
          Length = 474

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 73/190 (38%), Gaps = 28/190 (14%)

Query: 2   SSEQMPECPGVYQML--------DIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMIS 53
           + E +PE PGVY           +   R LY+G+A +L+ R+     +     +    I 
Sbjct: 195 AIEGLPEAPGVYLYFASPEAMPGEGRERPLYIGRAGSLRGRVMEQFAAAARGGKEADFIR 254

Query: 54  QINNIRFTVTCTEVEALLLEANMIKRLKPRFNIL---------LRDDKSFPYILITDKHK 104
           ++  + +  T  E+ A LLEA +++  +P  N           LR         I ++ +
Sbjct: 255 RVQRVEWVETAGELGAQLLEAELLRSHRPPHNRQPERGVDAFALR--------HIPNRKR 306

Query: 105 IPALYKHRDSSTIQGSY---FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLL 161
            P L +   + T   ++   +G F S    +  +      + L      +      PC  
Sbjct: 307 APILERVTVADTDPATWDALYGCFRSPREADNLLREFALLYQLCPRRLGLEHGGAGPCSA 366

Query: 162 FQIKRCSGPC 171
              +RC+G C
Sbjct: 367 HLARRCAGVC 376


>gi|332343461|gb|AEE56795.1| endonuclease [Escherichia coli UMNK88]
          Length = 249

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 18/236 (7%)

Query: 22  VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK 81
            LY+GK+ N++ R+ S++ + +       M+ Q   I +  T  E+ A LLEA +IK  +
Sbjct: 2   PLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICTAGEIGAPLLEARLIKEQQ 57

Query: 82  PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINSL 138
           P FN  LR ++    + + +K     +                FG FA+  A  + + ++
Sbjct: 58  PLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTI 113

Query: 139 QRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
                L           R R C    +KRC+G C G+ S E++   + ++ + L      
Sbjct: 114 ADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWP 173

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                      A  ++  E    H  +        N  +     +   + + +   
Sbjct: 174 W------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 223


>gi|207110770|ref|ZP_03244932.1| excinuclease ABC subunit C [Helicobacter pylori HPKX_438_CA4C1]
          Length = 84

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 8/84 (9%)

Query: 4  EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--------SNNHTHRITHMISQI 55
          + +P   GVYQ  D   ++LY+GKA NL+KRIKSY          ++  + R+  M+ QI
Sbjct: 1  KNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSIRNDEITPNHRASLRVQMMVKQI 60

Query: 56 NNIRFTVTCTEVEALLLEANMIKR 79
            +   +   E +AL+LE ++IK+
Sbjct: 61 AFLETILVENEQDALILENSLIKQ 84


>gi|332519635|ref|ZP_08396099.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
 gi|332044194|gb|EGI80388.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
          Length = 398

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 16/200 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           QMP   GVY + +  G ++Y+GK+ N+++RI  +    +   +   +  ++  + +  T 
Sbjct: 133 QMPSITGVYYIHNKDGDIIYIGKSKNIKRRINQHFTGTDSKSKKIQL--KVTTVTYEATG 190

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKS------FPYILITDKHKIPALYKHRDSSTIQ 118
            E+ ALL E   IKR KP  N  L+  KS      +  I  T+ +    +          
Sbjct: 191 NELIALLKENEEIKRNKPILNRALK--KSLFSHGLYKSID-TNGYINLNIEPVDGRKKAI 247

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
            +    F +  + +  +N       L     +        C  ++IK C G C  E ++E
Sbjct: 248 TT----FTNKQSGKAFLNHAAEKHKLC-LKLTGLEKTLSSCFKYEIKECEGACINEENTE 302

Query: 179 KYMEFVHEAKKFLSGGNHNL 198
            Y   V +  K  S  N N+
Sbjct: 303 AYNSKVQKIIKKYSYSNQNM 322


>gi|223939068|ref|ZP_03630952.1| Excinuclease ABC C subunit domain protein [bacterium Ellin514]
 gi|223892228|gb|EEF58705.1| Excinuclease ABC C subunit domain protein [bacterium Ellin514]
          Length = 319

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT--HRITHMISQINNIRFTVT 63
           +P+ PGVY M     RVLYVG++ NL++R+ SY ++       +I  ++  +  I +   
Sbjct: 27  VPKKPGVYIMSGEKDRVLYVGQSKNLRQRLSSYKNAKPDRVPRKIIRLVHSVRAITWQEC 86

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYI---LITDKHKI 105
            +   ALL E  +++ L+P+FN L    K++ +I    I ++   
Sbjct: 87  DSPEAALLKENELLRTLRPKFNKLNTYPKAYGFIGLKRIGNQMDF 131


>gi|229822620|ref|YP_002884146.1| Excinuclease ABC C subunit domain protein [Beutenbergia cavernae
           DSM 12333]
 gi|229568533|gb|ACQ82384.1| Excinuclease ABC C subunit domain protein [Beutenbergia cavernae
           DSM 12333]
          Length = 306

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 11/147 (7%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
           +P  PGVY+  D  GRVLYVG+A  L++R+ SY         +  M+ QI  +   V  +
Sbjct: 11  LPPAPGVYRFRDARGRVLYVGRASELRRRVTSYWGDLRGRGHLRRMVPQIARVEAVVCDS 70

Query: 66  EVEALLLEANMIKRLKPRFNILLRDD--KSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
           E EA  LE N+++  +PR+N   R +  +S  YI +            R         FG
Sbjct: 71  EHEAAFLERNLLEASRPRWN---RTEGVESIVYIRLE------RRAVLRHDPGGAAPVFG 121

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADS 150
           P+   + V    ++L R   L    + 
Sbjct: 122 PYLGGEKVRLAASALNRALSLAYAGER 148


>gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
          Length = 550

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 4/136 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY  +D AG  LYVG A +L+ R+ SY        ++  M+S    +R   T 
Sbjct: 229 DLPTSPGVYHFIDTAGGTLYVGSASSLKSRVGSYYTKAEKRPKVQRMVSLAAGVRPYPTA 288

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           + +EA + E   IK L P +N   R   S  ++ I +  + P +        +  +  GP
Sbjct: 289 SILEARIRELRDIKALAPPYNSASRRQGSQHWV-IAEADR-PRVVSSVTLDDLPNA-LGP 345

Query: 125 F-ASVDAVEKTINSLQ 139
           F     A        +
Sbjct: 346 FGTRAHAQRAAGAIER 361


>gi|291166052|gb|EFE28098.1| excinuclease ABC subunit C [Filifactor alocis ATCC 35896]
          Length = 123

 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAA-YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP 586
             I  +R+E HRFAI  HR  R+K    S LD+I G+G  +K +LL+ F +VK I   + 
Sbjct: 37  LLIYAIREEVHRFAIEYHRSLREKRLSRSKLDDIPGVGTKKKMILLKEFKSVKNIKEKTE 96

Query: 587 ETLASIEGISKKIACKIYNHFHKNTS 612
           E L++I+GI K+ A  I  +F K   
Sbjct: 97  EELSAIKGIDKRTAKNIVEYFDKKNP 122


>gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
 gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
          Length = 465

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 24/238 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVYQ    A +VLYVG A +L++R++SY  +     ++  M+    ++R   
Sbjct: 220 ADALPSGPGVYQFRSAADQVLYVGSAVDLKRRVRSYFTAAEKRRQVAQMLDTTVSVRHIA 279

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILI---TDKHKIPALYKHRDSSTIQ- 118
           T T +EA + E  MI  L P  N   R  +  P++ +   +     P L       T + 
Sbjct: 280 TPTLIEARVRELRMIAELDPPVNRRSRAPRRRPWLHLAQGSGPGAEPRLALTTVLPTEEV 339

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSE 178
           G   GPFAS    ++ + + +    L        R                     +  +
Sbjct: 340 GHAVGPFASRGRGQEALRAAESVLRLGRWDGRELRR--------------------VRHD 379

Query: 179 KYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
                  E    LSG    +   +   +   +  E YE A     RL  L    +  +
Sbjct: 380 DVPAEPAEVLACLSGEVDLVASPLLERIAALSRAERYEEAGTWTGRLRCLLRAVDRAE 437


>gi|150025957|ref|YP_001296783.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149772498|emb|CAL43981.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 453

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 30/197 (15%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH-RITHMISQINNIRFTV 62
           E +P   GVY +    G ++++GK+ N++KR+  +      +  +I     ++  + +  
Sbjct: 191 ESLPNKTGVYYIHKENGTIIFIGKSRNIKKRVNQHFTGITKSALKIQ---QEVFTVTYQE 247

Query: 63  TCTEVEALLLEANMIKRLKPRFNILL------------RDDKSFPYILITDKHKIPALYK 110
           T +E+ ALL E   IKR +P +N +             +D   +  +          L K
Sbjct: 248 TGSELIALLKETEEIKRNRPIYNRISPKTHFPVAIYCEKDANGYLNLK---------LQK 298

Query: 111 HRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGP 170
                    +Y     S+   +  +  +   + L      ++  +T  C   +I  C G 
Sbjct: 299 FDGRKKEITAY----TSLQEGKNNLFRITSQYNLCQKLTGLYETKTH-CFQQKINECDGA 353

Query: 171 CTGEISSEKYMEFVHEA 187
           C G+I+ ++Y + V E 
Sbjct: 354 CIGKITPQEYNKRVQEF 370


>gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
 gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
          Length = 540

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 4/136 (2%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY  +D AG  LYVG A +L+ R+ SY        ++  M+S    +R   T 
Sbjct: 219 DLPTSPGVYHFIDTAGGTLYVGSASSLKSRVGSYYTKAEKRPKVQRMVSLAAGVRPYPTA 278

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           + +EA + E   IK L P +N   R   S  ++ I +  + P +        +  +  GP
Sbjct: 279 SILEARIRELRDIKALVPPYNSASRRQGSLHWV-IAEADR-PRVVSSVTLDDLPNA-LGP 335

Query: 125 F-ASVDAVEKTINSLQ 139
           F     A        +
Sbjct: 336 FGTRAHAQRAAGAIAR 351


>gi|269926472|ref|YP_003323095.1| Excinuclease ABC C subunit domain protein [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790132|gb|ACZ42273.1| Excinuclease ABC C subunit domain protein [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 553

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 2/141 (1%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITH-MISQINNIRFTVTC 64
           +PE PGVY   D  G  +YVG + NL+ R+++Y+       R     +  +++  + +  
Sbjct: 241 VPEWPGVYIFYDSYGTPMYVGSSSNLRSRLRTYLAGQVDITRNMKGFLENVSDFEYVLLA 300

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           T +EA + E  +I RL P++NI     +   ++ I  K  I  L    D+      + GP
Sbjct: 301 THLEAQIEEMALISRLNPKYNIQKMRTRKLWWLRIEKKDNI-KLAVVSDNRKEGAFHLGP 359

Query: 125 FASVDAVEKTINSLQRTFFLR 145
             +   +      +Q    L 
Sbjct: 360 LPNRKLLYDLKIVVQSALTLC 380


>gi|255087270|ref|XP_002505558.1| exinuclease ABC subunits B and C-containing protein [Micromonas sp.
            RCC299]
 gi|226520828|gb|ACO66816.1| exinuclease ABC subunits B and C-containing protein [Micromonas sp.
            RCC299]
          Length = 1672

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 5    QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN--NHTHRITHMISQINNIRFTV 62
             +P   GVY+ L   G VLY+GKA +L+ R + Y+       + R   +     ++   +
Sbjct: 918  DLPAKTGVYRWLAGDGTVLYIGKAKSLRDRTRGYLAPGLLRRSPRHRRLAGLARSVDTVL 977

Query: 63   T-CTEVEALLLEANMIKRLKPRFNILLR 89
            T   E +AL LEA +I   KP  N+LL+
Sbjct: 978  TPGGEADALALEARLIAGTKPPLNVLLK 1005



 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 65/226 (28%), Gaps = 67/226 (29%)

Query: 377  HIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPND----------VKTQD 426
            H  + IE  D SH+ G +    +V   +       + +++L   +              D
Sbjct: 1407 HPIRSIEGVDVSHLAGSATAASVVKFTDGAADPAGHTRYDLDVVNARAPDGTLVGTPGDD 1466

Query: 427  DCAMMRMVLERRF-SQLIKNEENLNFHPKKQEYSF---------------PSWPDVVILD 470
              A+   V  R    + + +  +L                             PD  ++D
Sbjct: 1467 PGAIYAAVARRCAGKRGVVDLPDLLLIDGGVAQLAAAARALADAGVVVVNARAPDGTLVD 1526

Query: 471  GGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVK---------KGEALVLN 521
                + S        L    R+ + S+AKG  R +G E  +V            E     
Sbjct: 1527 RSSEEAS--------LGPARRVALASLAKG--RLSGEEAVYVPMFFSTAATLDDETDTFG 1576

Query: 522  ----------------------MRDPILYFIQRLRDEAHRFAITTH 545
                                     P L  ++ +RDE+H  A+  H
Sbjct: 1577 VAPFARGAHKAWCSSAAKGKDARGGPGLELLRAVRDESHAAALGAH 1622


>gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810]
 gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Brachybacterium faecium DSM 4810]
          Length = 551

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E +P  PGVYQ LD  G VLYVG + N++ R+++Y  +     ++  M+ +  ++R   
Sbjct: 215 AEDVPPVPGVYQFLDAQGAVLYVGTSRNVRSRVRTYFTAAETRRKVLDMLPRAESVRVIE 274

Query: 63  TCTEVEALLLEANMIKRLKPRFNI 86
             T  EA + E  +I R KP  N 
Sbjct: 275 CATATEASIRELRIIGREKPPSNR 298


>gi|89890830|ref|ZP_01202339.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
 gi|89516975|gb|EAS19633.1| DNA  polymerase III [Flavobacteria bacterium BBFL7]
          Length = 453

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 12/178 (6%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFTVTCTE 66
              GV+   +    ++++GK+ N++KR+     S+     +I  ++    ++ F  T  E
Sbjct: 195 STTGVFYFYNQNSELIHLGKSKNIKKRVTQIFTSSQAKQKKIQKLV---TDLSFEKTGNE 251

Query: 67  VEALLLEANMIKRLKPRFNILLRDDKSFP---YILITDKHKIPALYKHRDSSTIQGSYFG 123
           + ALL E   IK+ KP+FN  LR  K+F    Y  I +      L     +      Y  
Sbjct: 252 LIALLKENIEIKKNKPKFNKSLRK-KNFSHGLYSFIDN-DGYLNLKV--KAIGKDMGYIT 307

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
            F+S+ + +  +  +     L              C  + I +C G C    ++E Y 
Sbjct: 308 SFSSLKSGKNFLEKMVSQHQLC-RKLVGLEEIDTNCENYAIDQCHGACIQVENAESYN 364


>gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 525

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 4/130 (3%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P  PGVY  ++  G  LYVG A +L+ R+ SY   +    ++  M+S    +R   T 
Sbjct: 210 DLPPSPGVYHFINTDGDTLYVGSASSLRSRVASYYSRSEKRSKVQRMVSLAAGVRSFPTA 269

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGP 124
           + +EA + E   I  L P +N       S  Y +++D   IP +   R          GP
Sbjct: 270 SVIEARIRELRDISALSPPYNSASMRQGS-QYWVVSDGE-IPRVE-ARIGLGQVARSLGP 326

Query: 125 FAS-VDAVEK 133
           F S   A   
Sbjct: 327 FGSRAHATRA 336


>gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 299

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           ++ +P  PGVYQ    A +VLYVG A +L++R++SY  +     ++  M+    ++R   
Sbjct: 220 ADALPSGPGVYQFRSAADQVLYVGSAVDLKRRVRSYFTAAEKRRQVAQMLDTTVSVRHIA 279

Query: 63  TCTEVEALLLEANMIKRLKP 82
           T T +EA + E  MI  L P
Sbjct: 280 TPTLIEARVRELRMIAELDP 299


>gi|300311587|ref|YP_003775679.1| nuclease subunit of the excinuclease complex protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074372|gb|ADJ63771.1| nuclease subunit of the excinuclease complex protein
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 6/180 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E +P   GVY +     + LYVG++ NL+ R+ +++H          +I +   I    T
Sbjct: 49  EALPSACGVYILRGEGDQALYVGRSVNLRSRVLAHLHHAED----QFLIGRTRRIECLRT 104

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFG 123
             E+ A LLE ++++ L+P  N   R  +    + + ++ +              G  FG
Sbjct: 105 AGELGAALLENSLLRDLRPAHNKKQRAKRGLFTLRLDEQGQPLVAQVADHEFNRAGKLFG 164

Query: 124 PFASVDAVEKTINSLQRTFFLRSCADS--VFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
            + S  A ++ ++ L     L S A            C   QI+RC G CTGE S E++ 
Sbjct: 165 LYTSERAAQEALHKLVEHHGLCSIATGLEQGEGPGMACFGRQIRRCRGACTGEESHEQHQ 224


>gi|226324328|ref|ZP_03799846.1| hypothetical protein COPCOM_02109 [Coprococcus comes ATCC 27758]
 gi|225206776|gb|EEG89130.1| hypothetical protein COPCOM_02109 [Coprococcus comes ATCC 27758]
          Length = 261

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 122/254 (48%), Gaps = 11/254 (4%)

Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN---RMDCFSLYHNKNLACIQTCFFH 262
           M +A+   ++E AI +R+ L ++  I              D  +L      A +Q  F  
Sbjct: 1   MQEASDDLEFEKAIEYRELLHSVKQIAQKQKITDTGGEDRDIVALAREHEDAVVQVFFIR 60

Query: 263 FGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKP-CPENILLSEEAEETSLLEISFFK 321
            G+  G   F+L+      NA+ILS F++QFY   P  P  ++L  E EE  +LE    +
Sbjct: 61  NGRLIGRDHFYLRIAQGDENAEILSSFIKQFYAGTPYIPGELMLPVEPEEREILEAWLGE 120

Query: 322 QYGYKVKITVPKQGEKRKIIEQALINAHRS----HTQKLSTEISHQMILKDFTKKFALPH 377
           + G+KV   +PK+GEK K++E A  NA         +    E      +K+  K   L +
Sbjct: 121 KRGHKVHFRIPKKGEKEKLVELAAKNAKMVLEKDKERIKREEGRTIGAVKEIEKLLGLNN 180

Query: 378 IPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLER 437
           +  R+E YD S+  G ++VG M+V       +N YRKF++    V+  DD A MR VL R
Sbjct: 181 LV-RMEAYDISNTNGFASVGSMIVYERGKPKRNDYRKFHIKG--VQGADDYASMREVLTR 237

Query: 438 RFSQLIKNEENLNF 451
           RF   ++ +++   
Sbjct: 238 RFRHGLEEQKSGKE 251


>gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 476

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 7/186 (3%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P+ PGVY +L   G  LYVG+  NL++++ ++ +++    +  H+   I  + +  
Sbjct: 195 LDSLPDVPGVYLLLGDDGLPLYVGRGANLRRQVLAHFYADKAHGKTLHIAEPIRRVEWRE 254

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDK-HKI--PALYKHRDSS-TIQ 118
           T  E  A+LLE   I+  +PR N           I + +       P +    +   +  
Sbjct: 255 TLGEFGAMLLELQWIRAHRPRHNRRGGPGDELCSIQLGEGADGFVRPRIVLAHELDFSRT 314

Query: 119 GSYFGPFASVDAVEKTINSLQRTFFLRSC---ADSVFRHRTRPCLLFQIKRCSGPCTGEI 175
              +G F       K +  + R   L       + +   +  PC  FQ   C G C G  
Sbjct: 315 ADLYGLFRHPREARKMLQDMARAQGLCQAVLGVEQMTSRKGAPCGGFQAGLCRGACIGRE 374

Query: 176 SSEKYM 181
            + ++ 
Sbjct: 375 PAMQHN 380


>gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 382

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 13/130 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   GVY         LYVG++  +++R++S++     + +   +   +  + +  
Sbjct: 203 LDTAPAGCGVYAFYGEGDAPLYVGRSVRVRQRLRSHLTGERRSSKDMRLAQLVRRVEWRA 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKS------FPY---ILITDKHKIPALYKHRD 113
           T  E+ A+L EA  I  L+P  N L R  KS      +P+   I+  ++     ++    
Sbjct: 263 TGGELGAMLAEAQWIATLRPGHNRLPRVTKSDPANAPWPFEGPIVFEEREDAQRIFHV-- 320

Query: 114 SSTIQGSYFG 123
               +  Y G
Sbjct: 321 --VDRWRYLG 328


>gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 392

 Score = 98.3 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +  P   GVY     +   LYVG++  +++R++S++     + +   +  Q+  + +  T
Sbjct: 204 DTAPAGCGVYAFYGESDAPLYVGRSVRVRQRLRSHLTGERRSSKEMKLAQQVRRVEWRAT 263

Query: 64  CTEVEALLLEANMIKRLKPRFNI 86
             E+ ALL EA +I  L+P  N 
Sbjct: 264 GGEIGALLAEAQLIAALRPPNNR 286


>gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 382

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 13/130 (10%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   GVY         LYVG++  +++R++S++     + +   +   +  + +  
Sbjct: 203 LDTAPAGCGVYAFYGEGDAPLYVGRSVRVRQRLRSHLTGERRSSKDMRLAQLVRRVEWRA 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKS------FPY---ILITDKHKIPALYKHRD 113
           T  E+ A+L EA  I  L+P  N L R  KS      +P+   I+  ++ +   ++    
Sbjct: 263 TGGELGAMLAEAQWIATLRPGHNRLPRVTKSDPADAPWPFQGAIVFEEREEAQRVFHV-- 320

Query: 114 SSTIQGSYFG 123
               +  Y G
Sbjct: 321 --VDRWRYLG 328


>gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
 gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
          Length = 456

 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 12/226 (5%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           ++PE  GVY M++  G V+YVGKA N+++R K++            +  ++ ++++ +T 
Sbjct: 193 KIPEACGVYYMMNEKGNVVYVGKAINIKERFKNHFSGQLLPSLKQKLKEEVVDLKWEITG 252

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKS----FPYILITDKHKIPALYKHRDSSTIQGS 120
           TE  ALLLEA  IKR+ P++N  L+  K+    F Y    D          + +      
Sbjct: 253 TEFLALLLEALEIKRIWPKYNNALKLPKTMWGLFHY---EDNSGFSRFQIAKVTKH---- 305

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
              P  S  + ++    L+           +   R   C       C G C  +     Y
Sbjct: 306 -LRPLESFFSSDEAHAFLKEAIDNFDLCPRLCGIRKAACKPGDYNSCQGECFSQSKPNDY 364

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226
              V E    +      +   I     +      ++  I+ +    
Sbjct: 365 NLRVAELVARIKESQKEILLTIPGKSEEEYAACVFDRGILSKYGFY 410


>gi|256159431|ref|ZP_05457203.1| excinuclease ABC subunit C [Brucella ceti M490/95/1]
 gi|265997863|ref|ZP_06110420.1| UvrABC system protein C [Brucella ceti M490/95/1]
 gi|262552331|gb|EEZ08321.1| UvrABC system protein C [Brucella ceti M490/95/1]
          Length = 134

 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI 55
           +++P  PGVY+M +  G VLYVGKA NL+KR+ +Y     H++RIT MI + 
Sbjct: 81  KRLPNNPGVYRMFNSDGDVLYVGKARNLKKRVSNYARGIGHSNRITRMIRET 132


>gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
 gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
          Length = 547

 Score = 97.5 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 3/149 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           +E + + PGVY   D AG  LYVG + ++++R +SY    ++  R+  M+    ++    
Sbjct: 232 TEALTDGPGVYVFRDEAGGPLYVGSSGSVRRRARSYYSGGDNRGRMRTMVGLAASVESVP 291

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
               +EA  +E  +I  L+P FN   R  +   ++      +       R          
Sbjct: 292 CAHLLEAWTVEEQLIDSLQPPFNRRSRSPRRGWWLS-PPTGRANRPTIVRIPDDPTA--I 348

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSV 151
           GPF   +        L   F  R   +  
Sbjct: 349 GPFRRTEDARAAWEDLLEAFGGRPTPERW 377


>gi|294626592|ref|ZP_06705190.1| excinuclease subunit [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292599159|gb|EFF43298.1| excinuclease subunit [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 287

 Score = 97.1 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 33/183 (18%)

Query: 4   EQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           E +P+  GVY      G   LY+GK+ N++ R+  +      T     ++ Q   +    
Sbjct: 28  EALPKTAGVYIFHGKEGLLPLYIGKSVNVRTRVMDH----CRTPEEASLLRQTTLVSCIS 83

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSST--I 117
              +V A LLEA M+KR  P +N LLR              K+P    +  +R   +   
Sbjct: 84  MAGDVGARLLEAQMVKRQMPLYNKLLR--------------KVPRQFSIRLYRGEVSIVH 129

Query: 118 QGSY--------FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCS 168
              Y        +G ++S  + +K++  +     L      + R    RPC    ++RC+
Sbjct: 130 SAEYDVTSSPMLYGLYSSPQSAQKSLRRIADDHRLCYSLVGLERLPLGRPCFRAMLRRCA 189

Query: 169 GPC 171
           G C
Sbjct: 190 GAC 192


>gi|78046677|ref|YP_362852.1| nucleotide excision repair endonuclease [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035107|emb|CAJ22752.1| Excinuclease subunit [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 287

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 33/183 (18%)

Query: 4   EQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           E +P+  GVY      G   LY+GK+ N++ R+  +      T     ++ Q  ++    
Sbjct: 28  EALPKTAGVYTFHGKEGLLPLYIGKSVNVRTRVMDH----CRTLEEASLLRQTTSVSCIP 83

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPA---LYKHRDSST--I 117
              +  A LLEA M+KR  P +N LLR              K+P    +  +R   +   
Sbjct: 84  MAGDTGARLLEAQMVKRQMPLYNKLLR--------------KVPRQFSIRLYRGEVSIVH 129

Query: 118 QGSY--------FGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCS 168
              Y        +G ++S  + +K++  +     L      + R    RPC    +KRC+
Sbjct: 130 SAEYDVASSPMLYGLYSSPQSAQKSLRRIADDHRLCYALVGLERLPSGRPCFRAMLKRCA 189

Query: 169 GPC 171
           G C
Sbjct: 190 GAC 192


>gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
 gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 395

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 45/93 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   GVY         LYVG++  +++R++S++     + +   +  Q+  + +  
Sbjct: 215 LDTAPAGCGVYAFYGEQDLPLYVGRSVRVRQRLRSHLTGERRSAKDIRLAQQVRRVEWRA 274

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95
           T  E+ A+L EA  I  L+P  N + R  KS P
Sbjct: 275 TGGELGAMLAEAQWIAALRPGHNRVPRVAKSDP 307


>gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 383

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 45/93 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   GVY         LYVG++  +++R++S++     + +   +  Q+  + +  
Sbjct: 203 LDTAPAGCGVYAFYGEQDLPLYVGRSVRVRQRLRSHLTGERRSSKDIRLAQQVRRVEWRA 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95
           T  E+ A+L EA  I  L+P  N + R  KS P
Sbjct: 263 TGGELGAMLAEAQWIATLRPGHNRVPRVAKSDP 295


>gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 383

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 45/93 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   GVY         LYVG++  +++R++S++     + +   +  Q+  + +  
Sbjct: 203 LDTAPAGCGVYAFYGEEDLPLYVGRSVRVRQRLRSHLTGERRSSKDIRLAQQVRRVEWRA 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95
           T  E+ A+L EA  I  L+P  N + R  KS P
Sbjct: 263 TGGELGAMLAEAQWIATLRPGHNRVPRVAKSDP 295


>gi|86143556|ref|ZP_01061941.1| nuclease subunit Cho of the excinuclease complex (UvrC-like
           protein) [Leeuwenhoekiella blandensis MED217]
 gi|85830003|gb|EAQ48464.1| nuclease subunit Cho of the excinuclease complex (UvrC-like
           protein) [Leeuwenhoekiella blandensis MED217]
          Length = 519

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 122/288 (42%), Gaps = 15/288 (5%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E++P   GVY   D  G+ LY+GKA ++QKR+ S+      ++R   ++   ++I + +T
Sbjct: 241 EELPHKAGVYFFKDKNGKPLYIGKAIDIQKRVLSHFR--EKSNRKYELLQNTHSIDYELT 298

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILIT---DKHKIPALYKHRDSSTIQGS 120
            +E+ ALL EA +I +  P++N   ++  S PY  +T   +K+ I     H++      S
Sbjct: 299 GSELLALLREAELILKYYPKYNKAQKNP-SKPY-KLTSYHNKYGIEQFALHKNKIA-PVS 355

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
           +   +   +A++      ++            +     C  ++I  CSG C+GEI+  +Y
Sbjct: 356 WMQFYTREEAIQFMEEVCEKFELCP--KYCALQQGVDTCNHYKIHTCSGACSGEIAVTEY 413

Query: 181 MEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYN 240
              V +A  ++     +    +     +   ++ +    + + R +    +  ++D  +N
Sbjct: 414 NARVSKALDYIHTYEQSC---LLVEQGRNPGEKSF--IYLKQGRFSGYGFVDENSDFNHN 468

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSY 288
                 L   K+ A        +            T +E++   I + 
Sbjct: 469 EDFEHYLIPQKSSAYADRIIRRYLATEKNIVRLPLTTTENSTQDIFAS 516


>gi|312877166|ref|ZP_07737136.1| Excinuclease ABC C subunit domain protein [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|311796066|gb|EFR12425.1| Excinuclease ABC C subunit domain protein [Caldicellulosiruptor
          lactoaceticus 6A]
          Length = 59

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 2  SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH-THRITHMISQ 54
              +P  PGVY M D  G V+YVGKA NL+ R++ Y  ++     +   M+ +
Sbjct: 6  KLSNLPTSPGVYIMKDENGNVIYVGKAVNLRNRVRQYFQNSQDMPPKTKLMVKK 59


>gi|78048313|ref|YP_364488.1| putative excinuclease subunit (fragment) [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78036743|emb|CAJ24436.1| putative excinuclease subunit (fragment) [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 104

 Score = 95.2 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 3   SEQMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            E +P   GVY          LY+GK+ NL+ R+  +      T R   ++ Q   I   
Sbjct: 26  LETLPTTAGVYLFHGQDSELPLYIGKSVNLRVRVMDHFR----TPREASLLRQTRRISVF 81

Query: 62  VTCTEVEALLLEANMIKRLKP 82
               ++ A LLE+ +IK ++P
Sbjct: 82  EMAGDLGAQLLESQLIKSMRP 102


>gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 386

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 45/93 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY         LYVG++  +++R+++++     + +   +  Q+  + +  
Sbjct: 203 LETAPAGCGVYAFYGDDDLPLYVGRSVRVRQRLRAHLTGERRSSKDIRLAQQVRRVEWRA 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95
           T  E+ A+L EA  I  L+P  N + R  KS P
Sbjct: 263 TGGELGAMLAEAQWIAALRPGHNRVPRATKSDP 295


>gi|254495198|ref|ZP_05108122.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85819550|gb|EAQ40707.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 461

 Score = 94.0 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +PE  GVY   + A  ++YVGKA N+++R+ S+ +      +   M  +  ++ +T T
Sbjct: 192 DNLPETFGVYYFKNSAKEIIYVGKANNIKQRVISHFYDKKK--KEREMCLETAHLSYTET 249

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKS----FPYILITDKHKIPALYKHRDSSTIQG 119
            +E+ ALLLE++ IK   P++N   ++  S    F Y     + +   L+   +   +  
Sbjct: 250 GSELLALLLESSEIKTKFPKYNRSQKNSNSAIGLFSY-----EDQKGILHLAFNKLKLTP 304

Query: 120 SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEK 179
           +    F SV      + SL   + L        +   + C  + ++ C+G C  +     
Sbjct: 305 NPIMTFYSVSECRAFLESLCTEYQLCP-KYCHLQTNVKSCFSYHLQNCNGVCIDKEDVAT 363

Query: 180 YM 181
           Y 
Sbjct: 364 YN 365


>gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 423

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 44/93 (47%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   GVY         LYVG++  +++R+++++     + +   +  Q+  + +  
Sbjct: 242 LDTAPAGCGVYAFYGDDDLPLYVGRSVRVRQRLRAHLTGERRSSKDIRLAQQVRRVEWRA 301

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95
           T  E+ A+L EA  I  L+P  N   R  KS P
Sbjct: 302 TGGELGAMLTEAQWIAALRPGHNRAPRVAKSDP 334


>gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 383

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 45/93 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY         LYVG++  +++R+++++     + +   +  Q+  + +  
Sbjct: 203 LETAPAGCGVYAFYGEGDLPLYVGRSVRVRQRLRAHLTGERRSSKDMRLAQQVRRVEWRA 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95
           T  E+ A+L EA  I  L+P  N + R  KS P
Sbjct: 263 TGGELGAMLAEAQWIAALRPGHNRVPRVTKSDP 295


>gi|213021721|ref|ZP_03336168.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 122

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 21/139 (15%)

Query: 399 MVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEY 458
            VV   NG ++ +YR++N+    +   DD A M  VL RR+ + I+  +           
Sbjct: 1   CVVFDANGPLRAEYRRYNI--AGITPGDDYAAMNQVLRRRYGKAIEESK----------- 47

Query: 459 SFPSWPDVVILDGGKGQLSAAQGVLKKLNV---ENRITIISIAKGPKRSAGMEKFFV-KK 514
                PDV+++DGGKGQL+ A+ V  +L+V   ++R  ++ +AKG  R AG+E  F   +
Sbjct: 48  ----IPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLETLFFEPE 103

Query: 515 GEALVLNMRDPILYFIQRL 533
           GE   L    P L+ IQ +
Sbjct: 104 GEGFSLPPDSPALHVIQHI 122


>gi|171911567|ref|ZP_02927037.1| hypothetical protein VspiD_10345 [Verrucomicrobium spinosum DSM
           4136]
          Length = 335

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY--MHSNNHTHRITHMISQINNIRFT 61
           + +P  PGVY   D +G++LYVG+++ L+KR+ SY  +H + H  R+  ++ Q+  I + 
Sbjct: 29  QTVPREPGVYYFRDASGKLLYVGQSHELRKRVGSYRHVHPDRHPRRLVRLVHQVRQIEWE 88

Query: 62  VTCTEVEALLLEANMIKRLKPRFNI 86
           +  +   A+  E  ++  L+P FN 
Sbjct: 89  ICESPEAAIERERVLLLELRPGFNR 113


>gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 456

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 7/197 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P   G++ M +  G ++ + K+ N++KR+  Y  ++ +  R   +  +   + F  T
Sbjct: 191 DDLPSEVGLFYMHNKDGEIILLNKSNNIKKRVNQYFTNSGNRAR--RIQKETRKVTFEKT 248

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPY-ILITDKHK-IPALYKHRDSSTIQGSY 121
             E+ ALL E   + R KP++N   +  K F + +  +   +    L K    +      
Sbjct: 249 GNELIALLKENEELGRNKPKYNPFHKR-KLFTFGVYASLNDQGYLQL-KAEKLTHTIHQR 306

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
              F S+ A E  +++++  F L +  + + + +T  C  +    C G C  +  +E Y 
Sbjct: 307 ITTFNSLIAAENFLHAVRDEFQLCNKINGLSQAKTN-CSKYDEGTCLGACITKEDTETYN 365

Query: 182 EFVHEAKKFLSGGNHNL 198
             V E  +  S    N+
Sbjct: 366 HRVKELIQKYSLTEKNI 382


>gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 449

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 9/224 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             + +PE  GVY   D  G+V+YVGKA N++KR+ S+        +    +  I  + + 
Sbjct: 191 QFDALPETFGVYYFHDHKGKVIYVGKANNIKKRVISHFSGKQQNQKSQQFMQAIYGLSYE 250

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDD-KSFPYILITDKHKIPALYKHRDSSTIQGS 120
           V  +E+ +LLLE++ IK+  P +N + +   K++      D      L            
Sbjct: 251 VCGSELLSLLLESHEIKKYFPVYNSIQKFGEKNYGIYQYEDNAGFIRLSI-----AKVNK 305

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQI-KRCSGPCTGEISSEK 179
              P  S   + +    L                +T PC   ++   C G       + K
Sbjct: 306 LQHPLISFRYISEARTFLLEKVRTFQLCHRRSGLQTAPCSDVELCTACKGTTRSTAYNVK 365

Query: 180 YMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRD 223
               +   +      ++ +K+        A +  +    + +  
Sbjct: 366 MKRALATFEH--PDHSYIIKQPGRTRDEYAVIVVEAGRYLGYAY 407


>gi|27065203|pdb|1KFT|A Chain A, Solution Structure Of The C-Terminal Domain Of Uvrc From
           E- Coli
          Length = 78

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
              S L+ I G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A KI+
Sbjct: 21  MNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 73


>gi|88801444|ref|ZP_01116972.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
 gi|88782102|gb|EAR13279.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
          Length = 462

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 20/189 (10%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
           +  + +PE  GVY   ++A  ++YVGKA N+++R+ S+ +      +   M  +  ++ F
Sbjct: 190 IVIDNLPETFGVYYFKNLAKEIIYVGKANNIKQRVISHFYDKKK--KEQTMCLETADVSF 247

Query: 61  TVTCTEVEALLLEANMIKRLKPRFNILLRDDKS------FPYILITDKHKIPALYKHRDS 114
           T T +E+ ALLLE++ IK + P+FN   R  KS      F Y    D+  I  L  +R  
Sbjct: 248 TKTGSELLALLLESSEIKHIYPKFNRAQR--KSAEAVGLFSY---EDQKGILHLAYNRLK 302

Query: 115 STIQG--SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCT 172
                   Y+    S+      + +L  TF L        +     C  +Q+K C G C 
Sbjct: 303 LAPNALLKYY----SISECRNHLETLCETFELCP-KYCHLQTNVSSCFHYQLKECKGVCC 357

Query: 173 GEISSEKYM 181
            + + E Y 
Sbjct: 358 DKETVESYN 366


>gi|213422191|ref|ZP_03355257.1| UvrC excinuclease ABC subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 76

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 34/51 (66%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
            S L+ I G+GP R+++LL+  G ++ +  +S E +A + GIS+ +A KI+
Sbjct: 21  TSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 71


>gi|315281520|ref|ZP_07870131.1| UvrABC system protein C [Listeria marthii FSL S4-120]
 gi|313614832|gb|EFR88365.1| UvrABC system protein C [Listeria marthii FSL S4-120]
          Length = 252

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 18/252 (7%)

Query: 114 SSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTG 173
                  YFGP+    +  +T+  +++ F L  C         RPCL + +  C GPC  
Sbjct: 4   VKQDGAHYFGPYPGRYSARQTVELIEKLFPLCRCDG----KPGRPCLYYHLGLCLGPCHE 59

Query: 174 EISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           EI    Y   + +  +FL G   ++K+K+   M +A  K ++E A   RD++ A++    
Sbjct: 60  EIEPAIYENQIRKISRFLEGDIKDVKDKLTAEMQEAIEKLEFERAAELRDKMQAINETIE 119

Query: 234 HNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFL 290
               I+      D    Y   N   +   F   G   G+     +   E++    L+ F+
Sbjct: 120 KQHIIFPGLKNRDIIGCYQQDNYLSVFVFFVRNGAINGSKWHVFEI--ETSLQDDLANFI 177

Query: 291 RQFYTD--KPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINA 348
             FY D     P+ +L++E+ ++  L E         +     P++G K+K I+ A+ NA
Sbjct: 178 NHFYEDPNNIQPKELLIAEKIDKKLLQESL-------RKACLFPQKGGKKKQIDLAIENA 230

Query: 349 HRSHTQKLSTEI 360
             ++      + 
Sbjct: 231 KSAYIAYAKMKE 242


>gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 375

 Score = 90.2 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +       LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 203 LDTAPAGCGAYALFGENDEPLYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L EA  I RL+P +N  
Sbjct: 263 TGNELGAMLAEAQWIARLRPSYNRR 287


>gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 475

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
            + ++P  PGVY   D  GRVLYVG A +L  R++SY  ++  T  +  ++ + ++I   
Sbjct: 208 QARRLPHRPGVYYFHDA-GRVLYVGVATDLHDRVRSYFSADTRTS-VRRLLRRASSISAR 265

Query: 62  VTCTEVEALLLEANMIKRLKPRFN 85
               ++   L E   I+ L+P FN
Sbjct: 266 PVPCDIARPLTELAEIQTLRPPFN 289


>gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 442

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +++PE  G++ M +  G+++Y+GK  N++KR+     S   + R  ++      + +  
Sbjct: 190 LDELPEKLGIFYMHNEEGKIIYIGKHKNIKKRVNQLFTS--LSKRDRYLQRHTYKVTYEE 247

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A L E  +I+  KP+ N  
Sbjct: 248 TGNELIATLKEIEVIQLNKPKCNSR 272


>gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 375

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   GVY +       LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 203 LDTAPAGCGVYALFGEGDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDK 92
           T  E+ A+L EA  I RL+P  N     DK
Sbjct: 263 TGNELGAMLAEAQWIARLRPSHNRRPAADK 292


>gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 375

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   GVY +       LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 203 LDTAPAGCGVYALFGEGDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDK 92
           T  E+ A+L EA  I RL+P  N     DK
Sbjct: 263 TGNELGAMLAEAQWIARLRPSHNRRPAADK 292


>gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH]
          Length = 379

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + +   +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDDDAPLYVGRSVRVRQRLRALLTGERRSAKEMRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKS 93
           T  E+ ALL EA+ I  L P FN   R D+S
Sbjct: 263 TGGELGALLAEADWIASLAPSFNR--RSDRS 291


>gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 454

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 108/252 (42%), Gaps = 13/252 (5%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           EQ+P   GVY M D  G ++++G++ +++K++  +    ++  +   +  Q   + F  T
Sbjct: 191 EQLPNDTGVYYMYDKDGDLIFLGRSTDIKKKVNKHFTGVSNVAK--KLQKQTRKVTFEKT 248

Query: 64  CTEVEALLLEANMIKRLKPRFNILLRDDKSFPY-ILIT-DKHKIPALYKHRDSSTIQGSY 121
             ++ A L E   ++R+KP++N  +R  K F Y + I  +K    +L+  + ++T Q   
Sbjct: 249 GNDLIATLKENEELRRVKPKYNSSIRK-KLFNYGVFIKENKDGYLSLFIDKTTTTDQTIG 307

Query: 122 FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYM 181
              F+S  A +  ++   + F L +  + +   +T  C  ++   C+G C  + ++E Y 
Sbjct: 308 T--FSSYIAAKNFVHKTSKEFTLCNKVNYISEAKTN-CGNYEDGTCNGACIKKEATEVYN 364

Query: 182 EFVHEAKKFLSGGNHNL-----KEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236
             V +  +  S    N+       +I           +++    +       +     + 
Sbjct: 365 ARVKQVIETYSLAGKNILIKDKGREIGEYSAILIKNGEFKGYGYYNLNHQINNIHILESI 424

Query: 237 SIYNRMDCFSLY 248
               +    +++
Sbjct: 425 ITNMKSTQNTIH 436


>gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 375

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 43/85 (50%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +     + LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 203 LDTAPAGCGAYALFGEEDQPLYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L+EA  I RL+P +N  
Sbjct: 263 TGNELGAMLVEAQWIARLRPSYNRR 287


>gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 398

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 43/85 (50%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +     + LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 226 LDTAPAGCGAYALFGEEDQPLYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 285

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L+EA  I RL+P +N  
Sbjct: 286 TGNELGAMLVEAQWIARLRPSYNRR 310


>gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786]
          Length = 408

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E+ P   GVY +       LYVG++  +++R+++ +     + +   +   +  + +  
Sbjct: 203 LERAPAGCGVYALFGDNDVPLYVGRSVRVRQRLRALLTGERRSSKEMRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147]
          Length = 405

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E+ P   GVY +       LYVG++  +++R+++ +     + +   +   +  + +  
Sbjct: 203 LERAPAGCGVYALFGDNDVPLYVGRSVRVRQRLRALLTGERRSSKEMRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|329296606|ref|ZP_08253942.1| excinuclease ABC subunit C [Plautia stali symbiont]
          Length = 59

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            S L+ I G+GP R++ LL+  G ++ +  +S + +A + GIS  +A KIY    
Sbjct: 4   TSALESIEGVGPKRRQQLLKYMGGLQPLMNASVDDIAKVPGISFALAEKIYYWLK 58


>gi|323254394|gb|EGA38211.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
          Length = 221

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 51  MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYK 110
           M+ Q   I +  T  E+ ALLLEA +IK  +P FN  LR ++    + ++++     +  
Sbjct: 1   MLRQARRISWICTAGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KIEV 56

Query: 111 HRDSSTIQGS---YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQIKR 166
               S         FG FA+  A  +++ +L     L      +    R R C  F +KR
Sbjct: 57  VSARSVDFSHEPNLFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKR 116

Query: 167 CSGPCTGEISSEKYM 181
           C+G C G+ + + + 
Sbjct: 117 CAGACCGQETPQAHF 131


>gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis
           MSMB43]
          Length = 379

 Score = 87.5 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + +   +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDDDAPLYVGRSVRVRQRLRALLTGERRSAKEMRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4]
 gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264]
          Length = 379

 Score = 87.5 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + +   +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDDDAPLYVGRSVRVRQRLRALLTGERRSAKEMRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
 gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 378

 Score = 87.5 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +       LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 204 LDTAPAGCGAYALFGEEDAPLYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 263

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L EA  I RL+P +N  
Sbjct: 264 TGNELGAMLAEAQWIARLRPSYNRR 288


>gi|94967088|ref|YP_589136.1| UvrB/UvrC protein [Candidatus Koribacter versatilis Ellin345]
 gi|94549138|gb|ABF39062.1| UvrB/UvrC protein [Candidatus Koribacter versatilis Ellin345]
          Length = 413

 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 21/243 (8%)

Query: 14  QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA-LLL 72
            +    G   YV K  NL++R+   + +     +  ++  ++  + +++  ++ EA   L
Sbjct: 28  LLRGAEGTEPYVSKTSNLRRRMVRLLGAPEERTKRLNLRDRVQGLEYSLVASDFEAQFCL 87

Query: 73  EANM--I------KRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSS--TIQGSYF 122
              +  I       RLK RF          P + +  +++ P +           + +Y+
Sbjct: 88  YRTLREIFPSTYTDRLKLRF---------APLVRLILENEYPRVAVTTRIQSLKSKSAYY 138

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRCSGPCTGEISSEKYM 181
           GPFAS  A EK  N     F LR C D +      P C+  ++K C  PC    + E+Y 
Sbjct: 139 GPFASRVAAEKFSNDALDFFLLRRCTDDLNPDPAFPGCIYSEMKMCLAPCFKGCTDERYA 198

Query: 182 EFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNR 241
                 ++F   G  +L  +I  + N A+   ++E A     ++  L  +      +   
Sbjct: 199 AETASVREFFESGGRSLLRQIEIDRNIASENLEFEKAAELHTKIEKLKAVTQQASELVRN 258

Query: 242 MDC 244
           ++ 
Sbjct: 259 IER 261


>gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
 gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
          Length = 375

 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +       LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 203 LDTAPAGCGAYALFGERDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L EA  I RL+P +N  
Sbjct: 263 TGNELGAMLAEAQWIARLRPSYNRR 287


>gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 375

 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +       LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 203 LDTAPAGCGAYALFGERDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L EA  I RL+P +N  
Sbjct: 263 TGNELGAMLAEAQWIARLRPSYNRR 287


>gi|320539164|ref|ZP_08038835.1| putative endonuclease of nucleotide excision repair [Serratia
           symbiotica str. Tucson]
 gi|320030802|gb|EFW12810.1| putative endonuclease of nucleotide excision repair [Serratia
           symbiotica str. Tucson]
          Length = 227

 Score = 86.7 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 71/235 (30%), Gaps = 17/235 (7%)

Query: 38  YMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYI 97
           +  +         ++ Q   I F  T   + ALLLEA +IK+ +P FN  LR  K    +
Sbjct: 3   HFRAQGE----AKLLRQTQRISFITTAGALGALLLEAQLIKQQQPLFNKRLRRSKQLCSL 58

Query: 98  LITDKHKIPALYKHRDSSTIQG---SYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRH 154
            I D      +              + +G FA+       +  +     L      + + 
Sbjct: 59  RIGDG----RVMIVHAKEIDFAVTPNLYGLFANRSTALAKLRVIADEQRLCYGKLGIDKL 114

Query: 155 RTR-PCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKE 213
                C  F + +C+G C G  S +++ + +  A + +      +             + 
Sbjct: 115 PVGAACFRFSLGKCAGACCGAESEQQHGQRLVTALEQIR-----INCWPYTGRVALEEQG 169

Query: 214 DYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRG 268
           D        D    L  + +   +   +        +      +       +   
Sbjct: 170 DSLRQYHVIDNWFYLGSVSSLEQADALQHRASHFDSDGYKILCKPLMAGHYRIIE 224


>gi|213583235|ref|ZP_03365061.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 126

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 49  THMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPAL 108
             M+ Q   I +  T  E+ ALLLEA +IK  +P FN  LR ++    + ++++     +
Sbjct: 4   AAMLRQARRISWICTAGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ----KI 59

Query: 109 YKHRDSSTIQGS---YFGPFASVDAVEKTINSLQRTFFLRSCADSVFR-HRTRPCLLFQI 164
                 S         FG FA+  A  +++ +L     L      +    R R C  F +
Sbjct: 60  EVVSARSVDFSHEPNLFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFAL 119

Query: 165 KRCSGPC 171
           KRC+G C
Sbjct: 120 KRCAGAC 126


>gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 482

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 65/204 (31%), Gaps = 41/204 (20%)

Query: 3   SEQMPECPGVYQML--------DIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQ 54
            E +P+ PG+Y                 L+VG+A +L+ R++ +  +     R   + ++
Sbjct: 196 LEALPDAPGLYLFHAQPEPPPAGARDPALFVGRAQSLRARVREHFGAGARKGRDAELAAR 255

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHK---------- 104
           +  + +  T  E++  L E  +++ L P +N                +            
Sbjct: 256 VKRVEWIETAGELDTSLRENALLRALAPPYNR--------------PQEPAEAAFALRLL 301

Query: 105 --------IPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRT 156
                      +              G F +    +  +  L   + L           +
Sbjct: 302 PRRRRAPIYETVAIAGTDPADWHDLHGVFRNRREADNLLRELALLYRLCPRRLG-LEGGS 360

Query: 157 RPCLLFQIKRCSGPCTGEISSEKY 180
            PC     +RC+G C    + E++
Sbjct: 361 GPCTAHAARRCAGVCARRETPEEH 384


>gi|330903803|gb|EGH34375.1| excinuclease ABC subunit C [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 53

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 35/53 (66%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           + + G+GP R+R LL+ FG ++ +SR+S + +A   GISKK+A  IY + H  
Sbjct: 1   EGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 53


>gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
 gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
          Length = 469

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 22/191 (11%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           + E +P+ PGVY       R+LY+G++ +L+ R+  +            +  Q+  + + 
Sbjct: 195 ALEGVPDAPGVYSFFGENDRLLYIGRSASLRARVMEHFSPGRADS-EAGLARQVRRVEWE 253

Query: 62  VTCTEVEALLLEANMIKRLKPRFNI---------LLRDDKSFPYILITDKHKIPALYKHR 112
            T  E  A L EA++++  +P              LR        L+  + + P   +  
Sbjct: 254 ETAGEFAASLREADLLRARRPLHARPAVGGEDVFGLR--------LVPQRKRAPIFERVP 305

Query: 113 DSSTIQGSY---FGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG 169
             +T   ++    G F +    +  +  L + + L           +  C   + +RC+G
Sbjct: 306 LHATDPAAWEAVHGTFRTRKEADSLLRELAQLYQLCPRRLG-LEGGSGACGAHEARRCAG 364

Query: 170 PCTGEISSEKY 180
            CTG+ S   +
Sbjct: 365 VCTGKESIAAH 375


>gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 398

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 43/85 (50%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +     + LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 226 LDTAPVGCGAYALFGEEDQPLYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 285

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L+EA  I RL+P +N  
Sbjct: 286 TGNELGAMLVEAQWIARLRPSYNRR 310


>gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
          Length = 375

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 43/85 (50%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +     + LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 203 LDTAPVGCGAYALFGEEDQPLYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L+EA  I RL+P +N  
Sbjct: 263 TGNELGAMLVEAQWIARLRPSYNRR 287


>gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
          Length = 375

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 43/85 (50%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +     + LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 203 LDTAPVGCGAYALFGEEDQPLYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L+EA  I RL+P +N  
Sbjct: 263 TGNELGAMLVEAQWIARLRPSYNRR 287


>gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
 gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
          Length = 381

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYTLFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 668]
 gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 668]
          Length = 381

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKS 93
           T  E+ ALL EA+ I  L P FN   R D+S
Sbjct: 263 TGGELGALLAEADWIASLAPSFNR--RSDRS 291


>gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215]
          Length = 346

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112]
          Length = 343

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC
           13177]
          Length = 349

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894]
          Length = 350

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210]
          Length = 348

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9]
          Length = 352

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91]
          Length = 346

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14]
          Length = 323

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98]
          Length = 334

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|254192262|ref|ZP_04898751.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157987457|gb|EDO95233.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 310

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 132 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 191

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 192 TGGELGALLAEADWIASLAPSFNRR 216


>gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243]
 gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243]
          Length = 381

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 1106a]
 gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
 gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106a]
 gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
          Length = 381

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 381

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            E  P   GVY +       LYVG++  +++R+++ +     + + T +   +  + +  
Sbjct: 203 LESAPAGCGVYALFGDGDAPLYVGRSVRVRQRLRALLTGERRSSKETRLAQLVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ ALL EA+ I  L P FN  
Sbjct: 263 TGGELGALLAEADWIASLAPSFNRR 287


>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 375

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +       LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 203 LDTAPAGCGAYALFGEGDEALYVGRSVRVRQRLRALLTGERRSSKEMRIAQQVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L EA  I RL+P +N  
Sbjct: 263 TGNELGAMLAEAQWIARLRPAYNRR 287


>gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49]
          Length = 374

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +   A   LYVG++  +++R+++ +     + +   +  Q+  I +  
Sbjct: 203 LDTAPAGCGAYALFGEADAPLYVGRSVRVRQRLRALLTGERRSAKEMRLAQQVRRIEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L EA  I RL P FN  
Sbjct: 263 TGNELGAMLAEAQWIARLSPSFNRR 287


>gi|11499994|ref|NP_071240.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304]
 gi|2650671|gb|AAB91244.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 208

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L  I GIG  +   LL  FG+++ I+ +S   L  ++GI +K A +IY  F 
Sbjct: 157 LTAIPGIGEKKAEKLLDYFGSIQRIANASIAELKRVDGIGEKKAREIYRFFR 208


>gi|297518898|ref|ZP_06937284.1| nucleotide excision repair endonuclease [Escherichia coli OP50]
          Length = 91

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 5  QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           +P  PGVY     +    LY+GK+ N++ R+ S++ + +       M+ Q   I +  T
Sbjct: 30 DLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDE----AAMLRQSRRISWICT 85

Query: 64 CTEVEA 69
            E+ A
Sbjct: 86 AGEIGA 91


>gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG
           catalytic domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia glumae BGR1]
          Length = 381

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E+ P   G Y +       LYVG++  ++ R+++ +     + R   +  Q+  + + 
Sbjct: 206 DLERAPSGCGAYALFGEGDAPLYVGRSVRVRNRLRALLTGERRSARERRLAEQVRRVEWR 265

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIP 106
            T  E+ A+L EA+ I  L P FN    D +       T     P
Sbjct: 266 ETGGELGAMLAEAHWIAALSPAFNRKAGDAR-----RGTAGEPWP 305


>gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu]
          Length = 375

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 42/85 (49%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +   A   LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 203 LDTAPAGCGAYALFGEADEPLYVGRSVRVRQRLRALLTGERRSSKELRLAQQVRRVEWRG 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A+L EA  I RL+P FN  
Sbjct: 263 TGNELGAMLAEAQWIARLRPTFNRR 287


>gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 375

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 42/90 (46%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +       LYVG++  +++R+++ +     + +   +  Q+  + +  
Sbjct: 203 LDTAPAGCGAYALFGEGDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQQVRRVEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDK 92
           T  E+ A+L EA  I RL+P  N     DK
Sbjct: 263 TGNELGAMLAEAQWIARLRPSHNRRPAADK 292


>gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 375

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            +  P   G Y +       LYVG++  +++R+++ +     + +   +   +  I +  
Sbjct: 203 LDTAPAGCGAYALFGEGDEALYVGRSVRVRQRLRALLTGERRSSKEMRLAQLVRRIEWRE 262

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDK 92
           T  E+ A+L EA  I RL+P  N     DK
Sbjct: 263 TGNELGAMLAEAQWIARLRPSHNRRPAADK 292


>gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 453

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 9/191 (4%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P   G+Y + D  G+++++ K+ N+ KR+  +  S N   R  ++   +  I + +
Sbjct: 190 LDTLPNQLGIYYIYDKKGKLIFLSKSKNIYKRVNEHFTSENK--RDLYIQKHVGEIMYEL 247

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILI--TDKHKIPALYKHRDSSTIQGS 120
           T T + A L EA  +++ KP  N   +  KSFP++L+  T++     L    +       
Sbjct: 248 TGTTLIATLKEAQELQK-KPFLNRK-KKKKSFPFVLVAHTNEKGYIQLSI--EFVNTSQE 303

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKY 180
               F S +     +  L   + L +  +   +  T  C    I +C G C G+   ++Y
Sbjct: 304 NLAIFESKEEGLNLLFELTERYQLCTKLNGFSKAHTY-CYNHSIGQCKGACMGDEPFDEY 362

Query: 181 MEFVHEAKKFL 191
            + V++A +  
Sbjct: 363 NQRVYKALEHY 373


>gi|299135636|ref|ZP_07028820.1| excinuclease ABC [Acidobacterium sp. MP5ACTX8]
 gi|298601760|gb|EFI57914.1| excinuclease ABC [Acidobacterium sp. MP5ACTX8]
          Length = 482

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 82/199 (41%), Gaps = 29/199 (14%)

Query: 47  RITHMISQINNIRFTVTCTEVE-ALLLEA-------------NMIKRLKPRFNILLRDDK 92
           +  ++  ++  I +T T +E E AL+L                +  RL P +        
Sbjct: 75  KRLNLREKVRWIEWTATGSEFESALVLYCASRAVYGAEEARRRL--RLHPPY-------- 124

Query: 93  SFPYILITDKHKIPALYKH-RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSV 151
              ++ +T  H+ P +Y   R S       FGPF S  A E+  +++   F LR C + +
Sbjct: 125 ---FLRVTMTHEHPRVYSTNRLSKRALAETFGPFPSRAAAERYCDAVLDLFKLRRCYEDL 181

Query: 152 FRHRTRP-CLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQAT 210
             +   P C+  ++K+C  PC    S+E+Y        +F +    ++  ++A    +A+
Sbjct: 182 QPYPEHPGCVYGEMKKCMEPCKLACSAEEYAAEAQRVFRFFATSGESMLAEVAALREKAS 241

Query: 211 LKEDYESAIIHRDRLAALS 229
              D+E A     +   + 
Sbjct: 242 AAMDFEEAAALHKQWERVK 260


>gi|256026592|ref|ZP_05440426.1| excinuclease ABC subunit C [Fusobacterium sp. D11]
          Length = 53

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 5  QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMI 52
          ++PE  GVY M     +V+YVGKA NL+KR+ SY +  + + +   ++
Sbjct: 7  EIPESSGVYLMK-KNNKVIYVGKAKNLKKRVSSYFNRVHESEKTNELV 53


>gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 453

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 18/250 (7%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINNIRFT 61
            E +P   G++   +    ++++G++ N+  R+  Y  S N  + +I         I + 
Sbjct: 189 LENLPTKTGLFYFYNRLDDIIFIGRSSNIAYRVNRYFSSKNFESSKIKR---YTKYITYE 245

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKS-FPYILITDKHKIPALYKHRDSSTIQGS 120
           VT +E+ A + E + I   +P  NI +   K+ +    I  K     L   +        
Sbjct: 246 VTGSELLAEIKEVHEINLNQPFLNIKIIKSKTPYGLYFIPSKRSYHRLEIGKGRKAEPIL 305

Query: 121 YFGPFASVDAVEKTINSLQRTFFLRSC---ADSVFRHRTRPCLLFQIKRCSGPCTGEISS 177
            F       A ++T     +   L        ++ +  +  C  +++ +C G C  + + 
Sbjct: 306 TF-------ARKETALEFLQKVTLEYNLCPKINLLQPSSASCFSYEMGQCKGACIRKENP 358

Query: 178 EKYMEFVHEA--KKFLSGGNHNLKEKIARNMNQATLKEDYESAIIH-RDRLAALSHIQNH 234
           + Y E V     +         L +K  +    A    D    + +    L      +  
Sbjct: 359 KTYNERVEALVNRTNYPTETFILSDKGRKTGEHAFFFIDQGKFVGYGYYELHHQIKNRER 418

Query: 235 NDSIYNRMDC 244
              I N  D 
Sbjct: 419 IMKIVNPFDT 428


>gi|322436945|ref|YP_004219157.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX9]
 gi|321164672|gb|ADW70377.1| excinuclease ABC, C subunit [Acidobacterium sp. MP5ACTX9]
          Length = 484

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 97/242 (40%), Gaps = 30/242 (12%)

Query: 5   QMPECPGVYQMLDIAG--RVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           Q+P  PGV+ +          Y+ +A +L++R+   +       R  ++  ++  I + V
Sbjct: 35  QIPTLPGVFALRGERDTDEP-YLTRAADLRRRMTRLLAPPESQSRRLNLSQKVTTIAWCV 93

Query: 63  TCTEVEA-LLLEANM------------IKRLKPRFNILLRDDKSFPYILITDKHKIPALY 109
           T +E E+ L+L   +            +K   P F            +  T +H  P +Y
Sbjct: 94  TGSEFESTLVLYDALAAQFGHPEARRRMKLHTPTF------------LRFTAEHAHPRVY 141

Query: 110 KHRDSSTIQ-GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKRC 167
                S     + +GPF S  A E+  +++   F LR C + +    + P C   ++K+C
Sbjct: 142 STNKLSRRSLDNTYGPFQSRTAAERYCDAVLDLFKLRRCHEDLEVSPSHPGCAYGEMKKC 201

Query: 168 SGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAA 227
             PC    ++++Y       K F      ++   I+ +  +A+   ++E A     +   
Sbjct: 202 MAPCNQTCTADEYAAESAAVKAFFDTHGDSMLAAISADRERASSDMEFEQAAALHTQYTK 261

Query: 228 LS 229
           + 
Sbjct: 262 VK 263


>gi|213418951|ref|ZP_03352017.1| excinuclease ABC subunit C [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 97

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 96  YILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR 155
           +I ++     P L  HR +   +G YFGPF +  AV +T+  LQ+ F +R C +SV+R+R
Sbjct: 6   FIFLS-GDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNR 64

Query: 156 TRPCLLFQIKRCSGPCT 172
           +RPCL +QI RC GPC 
Sbjct: 65  SRPCLQYQIGRCLGPCV 81


>gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9]
 gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis
           HLHK9]
          Length = 493

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 8/175 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +P+ PGV++++   G VL+VGKA NL+  +  Y        +   + +++ ++ +  T
Sbjct: 197 DHLPDVPGVFRLMAADGTVLHVGKAANLRASVLRYFQPRVRNQKEARLAARVASVVWDET 256

Query: 64  CTEVEALLLEANMIKRL-KPRFNILLRDDKSFPYILITDKH-----KIPALYKHRDSSTI 117
             E  A L E  ++ +L  P      R D++     +          +P +      +  
Sbjct: 257 LGEFGAALREVRILGQLPAPLAGGKGRADETALSWRLVADEQGYLGPVP-VPLAEALAGH 315

Query: 118 QGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHR-TRPCLLFQIKRCSGPC 171
            G  FG F +    ++ + +   ++ L      + + R  RPC    + RC G C
Sbjct: 316 AGRCFGVFRNPREAQRLLATFADSYKLCCKRLGLEQSRSGRPCSAHSLGRCRGAC 370


>gi|326791316|ref|YP_004309137.1| excinuclease ABC C subunit domain protein [Clostridium
          lentocellum DSM 5427]
 gi|326542080|gb|ADZ83939.1| Excinuclease ABC C subunit domain protein [Clostridium
          lentocellum DSM 5427]
          Length = 67

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 2  SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTH 46
           ++ +   PGVY M D  G V+YVGK+ +L+ R+ SY  S  H  
Sbjct: 9  QAKNLSLTPGVYLMKDREGYVIYVGKSKHLKNRVSSYFGSLKHVP 53


>gi|292492317|ref|YP_003527756.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4]
 gi|291580912|gb|ADE15369.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4]
          Length = 236

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KRR +     L  + GIGP R R LL  FG+V+ +  +  E L ++ GI K++A  I   
Sbjct: 163 KRRTQLTL--LQGLPGIGPERARQLLAHFGSVEAVLNAHLEELMTVPGIGKEVARGIRWA 220

Query: 607 FHKNTSH 613
            ++  + 
Sbjct: 221 VNERETE 227


>gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Chromobacterium violaceum ATCC 12472]
          Length = 481

 Score = 77.5 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 29/199 (14%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRIT--HMISQINNIR 59
             E MP+  GVY +    GR LYVG+A NL ++   +       H+     +   +  + 
Sbjct: 196 QIEDMPDSAGVYALFGADGRALYVGRAPNLYRKALGHFAERKPGHKSHEVRIDEPVARVE 255

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLR-------------DDKSFPYILITDKHKIP 106
           +     E  A L E   + RL+P  N   R             DD    Y+        P
Sbjct: 256 WRECLGEFGARLQELQWLGRLQPLHNPRARMMGEICTLQVQAGDDG---YVR-------P 305

Query: 107 ALYKHRDSS-TIQGSYFGPFASVDAVEKTINSLQRTFFLRSC---ADSVFRHRTRPCLLF 162
                RD   +     +G F       K +  +     L       + V   +  PC  +
Sbjct: 306 LPVSARDIDFSRTADLYGLFRHAREARKALAQIALAQGLCQSVLGVEQVTSRKGAPCAAY 365

Query: 163 QIKRCSGPCTGEISSEKYM 181
           +I+RC G C G+  ++ + 
Sbjct: 366 RIRRCRGACVGDEGADSHN 384


>gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
 gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
          Length = 442

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +PE  GV+ + +  G+++YVGK  N++ R+   + S   + R  ++      + +  
Sbjct: 190 LDALPETLGVFYIHNKEGKIIYVGKHKNIKGRVNQLLTSP--SKRDRYLQRHTYKVTYEE 247

Query: 63  TCTEVEALLLEANMIKRLKPRFN 85
              E+ A L E  +I+   P+ N
Sbjct: 248 MGNELIATLKELELIQLNNPKCN 270


>gi|320105770|ref|YP_004181360.1| Nuclease subunit of the excinuclease complex [Terriglobus saanensis
           SP1PR4]
 gi|319924291|gb|ADV81366.1| Nuclease subunit of the excinuclease complex [Terriglobus saanensis
           SP1PR4]
          Length = 414

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 115/285 (40%), Gaps = 36/285 (12%)

Query: 5   QMPECPGVYQMLD--IAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           + P   GV+ +       R  Y+ K+ N+++R++  +  +    +  ++  +I  + ++ 
Sbjct: 14  EAPAGCGVFALYGAGEGDRP-YLAKSGNIRRRLQRLLEPSEGQTKRLNLRDRIARVAWSR 72

Query: 63  TCTEVEALLL------------EANMIKRLK--PRFNILLRDDKSFPYILITDKHKIPAL 108
           T ++ E++LL            E    KRLK  P +            +  T +++ P +
Sbjct: 73  TGSDFESVLLLYRASSEAFGRDETR--KRLKLYPPY-----------VVRFTVENRFPRM 119

Query: 109 YKH-RDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLFQIKR 166
           Y   R       + +GPFAS  + E+ ++ +   F LR C + +      P C   ++K+
Sbjct: 120 YVTSRLGRRTLHTSYGPFASRASAERYVDGVNELFHLRRCHEELVPFPEHPGCAYGEMKK 179

Query: 167 CSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLA 226
           CS PC   ++ ++Y         FL+    +L EKIA    +A+   ++E+A    +R  
Sbjct: 180 CSAPCQARVTDDEYRAEADAVLDFLATRGESLLEKIAAEREKASEDMEFEAAAAAHERYV 239

Query: 227 ALSHIQNHNDSIYNRMDCFSLYHN----KNLACIQTCFFHFGQNR 267
            +         +   +D           ++ A +Q      G   
Sbjct: 240 EVKATAALAGELVRPLDKLRGVVFLPAAEDAAVVQVWLMQGGCLH 284


>gi|2661731|emb|CAA64810.1| uvrC-like protein [Pectobacterium carotovorum]
          Length = 51

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 3  SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN 42
           + +   PGVY+M D+   V+YVGKA +L+KR+ SY  S+
Sbjct: 11 LKTVTSQPGVYRMYDVGNTVIYVGKAKDLKKRLASYFRSH 50


>gi|288930501|ref|YP_003434561.1| ERCC4 domain protein [Ferroglobus placidus DSM 10642]
 gi|288892749|gb|ADC64286.1| ERCC4 domain protein [Ferroglobus placidus DSM 10642]
          Length = 213

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L  I GIG  R + LL+ FG ++ I+ +S   L  +EGI +K A +IY+ F 
Sbjct: 157 LTAIPGIGEERAKRLLEKFGNLQRIANASLYELMRVEGIGEKYARRIYDAFR 208


>gi|207110420|ref|ZP_03244582.1| excinuclease ABC subunit C [Helicobacter pylori HPKX_438_CA4C1]
          Length = 105

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 457 EYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR------SAGMEKF 510
           +++    P++ ++DGG+ QL+ A  +LK     + + +I+I+K  +         G +  
Sbjct: 2   DFAKEPPPNLWVIDGGRAQLNIALEILKSSG--SFVEVIAISKEKRDSKAYRAKGGAKDI 59

Query: 511 FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554
                +   L   D  L ++Q+LRDE+HR+AI  HR  + K   
Sbjct: 60  IHTPSDTFKLLPSDKRLQWVQKLRDESHRYAINFHRSTKLKNMK 103


>gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
 gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
          Length = 388

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
             E+ P   G Y +       L+VG++  ++ R+++ +     + +   +  Q+  + + 
Sbjct: 202 DLERAPAGFGAYALFGEGDAPLFVGRSVRVRNRLRALLGGERRSAKERRLAEQVRRVEWR 261

Query: 62  VTCTEVEALLLEANMIKRLKPRFNIL 87
            T  E+ A+L E   I  L P FN  
Sbjct: 262 ETGGELGAMLAETAWIAELSPAFNRK 287


>gi|116626337|ref|YP_828493.1| UvrB/UvrC protein [Candidatus Solibacter usitatus Ellin6076]
 gi|116229499|gb|ABJ88208.1| UvrB/UvrC protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 370

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 113/311 (36%), Gaps = 11/311 (3%)

Query: 47  RITHMISQINNIRFTVTCTEVEALLL--EANMIKRLKP-RFNILLRDDKSFPYILITDKH 103
           R+ ++   +  I + +T +  E+ ++  EA   +R  P R+ + L   +  PY+ +   +
Sbjct: 60  RLLNLRHTVARIEYQLTGSAFESSVVFYEAA--RRHFPERY-LQLMKLRMPPYLKVVLGN 116

Query: 104 KIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRP-CLLF 162
           + P        +   G YFGPF S  + E+        F +R C + +      P C+  
Sbjct: 117 EFPRSQITTQLTRSAGLYFGPFRSRASAERFEGQFLDLFQMRRCQEDLIPTPEHPGCIYG 176

Query: 163 QIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHR 222
           ++  C  PC   +  E+Y   V    +FL     +L E I  + ++ + +  +E A    
Sbjct: 177 EMAMCLRPCQQVVGREEYGHEVDRVVEFLRTDGRSLLESIGHSRDRLSEEMMFEEAARQH 236

Query: 223 DRLAALSHIQNHNDSIYNRMDCF-SLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST 281
            R   +  +    D +   +D    +    +LA      +   +           + +  
Sbjct: 237 KRFEKVQEVLRLRDELVREVDGLNGVAITPSLAHDAVEMWFVREGTWCRPERFGFEVQEG 296

Query: 282 NAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE--KRK 339
               L   LR        P  + + E  E  +LL   ++  +     +      E   RK
Sbjct: 297 KPVSLDRKLRDLLAGVQ-PRKLSVRERQEYLALLARWYYSTWREGEWLNFESYDEIPYRK 355

Query: 340 IIEQALINAHR 350
           ++      A R
Sbjct: 356 LVNAVSRVARR 366


>gi|74151355|dbj|BAE38800.1| unnamed protein product [Mus musculus]
          Length = 221

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 548 RRKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           R+K++  S L       +I G+G ++ RLLLQ F +++ +S +S + L  + G     A 
Sbjct: 148 RKKRSMLSELSLVQTVQQIPGVGKVKARLLLQKFPSIQQLSNASVQELEEVVG--PAAAQ 205

Query: 602 KIYNHFHKNTSHTP 615
           +I+  F +     P
Sbjct: 206 QIHTFFTQPKRQQP 219


>gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
 gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
          Length = 442

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +PE  G++ M +  G+V+Y+GK  N+++++     S   + R  ++      + +  
Sbjct: 190 LDTLPETLGIFYMHNEEGKVIYIGKHKNIKQQVNRLFTSP--SKRDRYLQRHTYRVTYQE 247

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A L     I    P+ N  
Sbjct: 248 TGNELIATLKRLEEIHLNLPKCNRR 272


>gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
 gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
          Length = 442

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +PE  G++ M +  G+V+Y+GK  N+++++     S +   +  ++      + +  
Sbjct: 190 LDTLPETLGIFYMHNEEGKVIYIGKHKNIKQQVNRLFTSPSKRDK--YLQRHTYRVTYQE 247

Query: 63  TCTEVEALLLEANMIKRLKPRFNIL 87
           T  E+ A L     I    P+ N  
Sbjct: 248 TGNELIATLKRLEEIHLNLPKCNRR 272


>gi|255513551|gb|EET89817.1| ERCC4 domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 222

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            I  IGP     LL  FG++K IS ++ E L  ++ I  K A KI+ 
Sbjct: 163 NIPDIGPKIATALLLHFGSIKAISEATIEELCRVDKIGPKKAEKIFK 209


>gi|110597593|ref|ZP_01385878.1| DNA processing protein DprA, putative [Chlorobium ferrooxidans DSM
           13031]
 gi|110340713|gb|EAT59190.1| DNA processing protein DprA, putative [Chlorobium ferrooxidans DSM
           13031]
          Length = 375

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-H 608
           K      L  I GIGP R + L+     +  + ++  E L +I GI + +A +I+++  H
Sbjct: 3   KSMLLLALTLIPGIGPSRIKALINHLPDINDVLQADVEALKTIPGIGEPLARQIHDYLAH 62

Query: 609 KNTSHT 614
             T   
Sbjct: 63  SETRAA 68


>gi|254166800|ref|ZP_04873654.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|289596077|ref|YP_003482773.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|197624410|gb|EDY36971.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|289533864|gb|ADD08211.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
          Length = 221

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L  +  IG    + LL+ FG+++ I+R++   L  +EGI  K A +IY  FH
Sbjct: 169 ALSSLPYIGEKIAKALLEHFGSIEKIARANIVELKKVEGIGDKKARQIYRIFH 221


>gi|239618216|ref|YP_002941538.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
 gi|239507047|gb|ACR80534.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
          Length = 672

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K RK+  +  L    I G+G    R L + F T+  +  ++ + L  + GI  ++A  I 
Sbjct: 501 KSRKRPLHKLLAGLGIPGVGVKLARDLAEHFKTLDALQNATIDQLLEVPGIGLELAKNIV 560

Query: 605 NHFH 608
             F+
Sbjct: 561 EFFN 564


>gi|49240338|gb|AAT58040.1| UvrC [Mycoplasma synoviae]
          Length = 304

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 118/324 (36%), Gaps = 37/324 (11%)

Query: 87  LLRDDKSFPYILITDKHKIPALYKHRDSSTIQ-GSYFGPFASVDAVEKTINSLQRTFFLR 145
           +L DDK +PY+ I  K  +     +R S   +   Y+GP+      +  +  LQR F   
Sbjct: 2   MLLDDKQYPYLNIKIKDSLEIKQTYRVSKNSEFNIYYGPYPQSHLFK-FVKILQRIFLYN 60

Query: 146 SCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARN 205
                                  G    +     ++E  +  K+ L   N++    +   
Sbjct: 61  Q----------------------GLLIKDKPKMYWIEKFNTLKEILKFKNNDFNNLLKEK 98

Query: 206 MNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQ 265
           M  A    ++E+AI ++  L  +S  +       ++   + ++  +        F+    
Sbjct: 99  MLAAADNLNFEAAIEYQKALEFISQFKEKQIIEISKYKNYDVFSFEEKNESIAIFYMLYI 158

Query: 266 NRGTCTFFLKTDSESTNAQI-LSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYG 324
                 F  K      + +  +S FL++FY +K  P+NI+L  + ++ +L      K   
Sbjct: 159 YGVQNIFQRKIIENYDSLENIISNFLKEFYKNKALPDNIILDYKYKDLNLDLDFKSK--- 215

Query: 325 YKVKITVPKQGEKRKIIEQALINAHRSHTQKLST----EISHQMILKDFTKKFALPHIPK 380
               I  P++G    +I+ A  N +  +   L+     E     + K+   +  L     
Sbjct: 216 ----IIFPQKGINHDLIKLANENNNSGYESYLNQKIILEQHKLNLWKNLASELFLD-KLN 270

Query: 381 RIEIYDNSHIMGCSAVGCMVVVGE 404
            I I+DNSH    S +   +    
Sbjct: 271 SIFIFDNSHFNNSSPIASCICYTN 294


>gi|254168497|ref|ZP_04875341.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
 gi|197622552|gb|EDY35123.1| ERCC4 domain protein [Aciduliprofundum boonei T469]
          Length = 221

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L  +  IG    + LL+ FG+++ I+R++   L  +EGI  K A +IY  FH
Sbjct: 169 ALSSLPYIGEKIAKALLEHFGSIEKIARANIVELKKVEGIGNKKARQIYRIFH 221


>gi|225874186|ref|YP_002755645.1| excinuclease ABC, C subunit homolog [Acidobacterium capsulatum ATCC
           51196]
 gi|225791503|gb|ACO31593.1| excinuclease ABC, C subunit homolog [Acidobacterium capsulatum ATCC
           51196]
          Length = 405

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 31/208 (14%)

Query: 41  SNNHTHRITHMISQINNIRFTVTCTEVEALL--------------LEANMIKRLKPRFNI 86
               + R+  + +QI  I +T T +E EALL               E            +
Sbjct: 55  KPEQSKRLQ-LAAQIRRIEYTRTGSEFEALLCLYQASVEAMGERARER-----------M 102

Query: 87  LLRDDKSFPYILITDKHKIPALY-KHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLR 145
            LR      ++ ++ +++ P +Y   R +       FGPF S    E+ +  +   F LR
Sbjct: 103 HLRAP---VFLRMSMQNEFPRVYPATRLTLKAAEDLFGPFPSRWMAERWLEQMLNLFLLR 159

Query: 146 SCA-DSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIAR 204
            C  D         C+  ++++C  PC    +  +Y E       FL+    +L+ ++A 
Sbjct: 160 RCQEDLEPDPAFAGCIYSEMRKCLAPCFEGCTRARYDEEAAAVHDFLATRGESLRARLAA 219

Query: 205 NMNQATLKEDYESAIIHRDRLAALSHIQ 232
               A+   D+E A     R+  +  + 
Sbjct: 220 EREAASEALDFEKAAEVHARVERVDEVM 247


>gi|530455|emb|CAA83786.1| excinuclease ABC (C) [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 169

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 21/175 (12%)

Query: 393 CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFH 452
               G  +V      V N++RK+N+             M    +R   ++ + E+     
Sbjct: 15  SFITGAGIVYXNAKPVXNKFRKYNIDSQYTSDYARMKFMLE--KRFLKRIKEKEQ----- 67

Query: 453 PKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFV 512
                      PD++I+DGG  Q+ AA+ VL KLN+  +I +I ++K             
Sbjct: 68  ----------LPDLIIVDGGIIQIHAAKEVLNKLNL--KINVIGLSKDNNHKTRYLIDIF 115

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLR 567
           +  + + +     +  F+  L+     +A +  RK+        +  I G+G   
Sbjct: 116 E--QTIDIKNFKKLYNFLTSLQIRVDEYAKSGFRKKYHNQLNDQILLIKGVGKKT 168


>gi|91790880|ref|YP_551831.1| ERCC4 [Polaromonas sp. JS666]
 gi|91700760|gb|ABE46933.1| ERCC4 [Polaromonas sp. JS666]
          Length = 217

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + + G GP   + LL  FG+ + +  +S + L +++GI +K A +I    
Sbjct: 161 EGLPGCGPGTAKKLLGHFGSAERVFAASVDELCAVKGIGRKTADQIRELL 210


>gi|255029283|ref|ZP_05301234.1| hypothetical protein LmonL_09458 [Listeria monocytogenes LO28]
          Length = 213

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 14/212 (6%)

Query: 154 HRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKE 213
              RPCL + +  C GPC  EI    Y + +H+  +FL G   N+K+K+  +M  AT   
Sbjct: 1   KPGRPCLYYHLGLCLGPCQAEIEPAVYKKQIHKIXRFLEGDVKNVKDKLLGDMLTATENL 60

Query: 214 DYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLACIQTCFFHFGQNRGTC 270
           ++E A   RD++ A++        I+      D    Y   N   +   F   G   G+ 
Sbjct: 61  EFERAAELRDKIHAINETIEKQHIIFPGLKNRDIIGCYEQDNYLSVFVFFVRNGAINGSK 120

Query: 271 TFFLKTDSESTNAQILSYFLRQFYTD--KPCPENILLSEEAEETSLLEISFFKQYGYKVK 328
               +   E T  + L+ FL QFY D     P+ +L++E+ +++ L E         +  
Sbjct: 121 WHVFQV--EKTLQEELATFLNQFYEDPNNIQPKELLIAEKIDKSLLNE-------PLRKA 171

Query: 329 ITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
              P++G K+K ++ A+ NA  ++      + 
Sbjct: 172 CLFPQKGSKKKQVDLAIENAKSAYIAYAKMKE 203


>gi|307352953|ref|YP_003894004.1| helicase domain-containing protein [Methanoplanus petrolearius DSM
           11571]
 gi|307156186|gb|ADN35566.1| helicase domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 766

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 16/129 (12%)

Query: 477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDE 536
           +A +G L  +++   ITII   K  + +A M      + E+     + P  +        
Sbjct: 647 NAIRGALAAMSIGMGITIIQ-TKDAEDTAEMLYVLAGREESEYGPSKSPHFH-------- 697

Query: 537 AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
                 T  R  R ++    +     IGP   R LL  FG+++ I  ++ E L  + GI 
Sbjct: 698 -----KTY-RSER-ESLEYVISSFPSIGPKNARDLLDHFGSIQDIMNANIEELKVVPGIG 750

Query: 597 KKIACKIYN 605
            KIA  ++ 
Sbjct: 751 DKIAKSVFE 759


>gi|332977611|gb|EGK14379.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)]
          Length = 695

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK   S       I G+G    + L + FG +  +  +S E+L ++  I    A +IY+ 
Sbjct: 528 KKTTLSRFIYAIGIKGVGETTAQNLAKHFGDLPALMDASIESLEAVPDIGTITAEQIYDF 587

Query: 607 FH 608
           F 
Sbjct: 588 FR 589


>gi|157818947|ref|NP_001102805.1| hypothetical protein LOC502320 [Rattus norvegicus]
 gi|149056194|gb|EDM07625.1| similar to RIKEN cDNA C230052I12 (predicted) [Rattus norvegicus]
          Length = 221

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 544 THRKRRKKAAYSPL----DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
             RK+R   + S L     +I G+G ++  LLLQ F +++ +S +S + L  + G  + +
Sbjct: 146 FLRKKRSMLSESSLVQTVQQIPGVGKVKAPLLLQKFPSIQQLSNASTQELEEVVG--RTV 203

Query: 600 ACKIYNHF 607
           A +I+  F
Sbjct: 204 AQQIHTFF 211


>gi|30519993|ref|NP_848758.1| Fanconi anemia-associated protein of 24 kDa [Mus musculus]
 gi|81913153|sp|Q8BHL6|FAP24_MOUSE RecName: Full=Fanconi anemia-associated protein of 24 kDa
 gi|26327417|dbj|BAC27452.1| unnamed protein product [Mus musculus]
 gi|26333665|dbj|BAC30550.1| unnamed protein product [Mus musculus]
 gi|26349711|dbj|BAC38495.1| unnamed protein product [Mus musculus]
 gi|66794596|gb|AAH96687.1| RIKEN cDNA C230052I12 gene [Mus musculus]
 gi|148671072|gb|EDL03019.1| RIKEN cDNA C230052I12 [Mus musculus]
          Length = 221

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 548 RRKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           R+K++  S L       +I G+G ++  LLLQ F +++ +S +S + L  + G     A 
Sbjct: 148 RKKRSMLSELSLVQTVQQIPGVGKVKAPLLLQKFPSIQQLSNASVQELEEVVG--PAAAQ 205

Query: 602 KIYNHFHKNTSHTP 615
           +I+  F +     P
Sbjct: 206 QIHTFFTQPKRQQP 219


>gi|297184143|gb|ADI20262.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 442

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRIT-HMISQINNIR 59
           +  + M    G+Y + +  G  +YVG + +LQ  I  +  ++N   +I   + S+   + 
Sbjct: 188 LQVKNMQNKVGIYYIYNEEGEAIYVGSSKDLQNSINRHFVADN---KIALALQSEATTLE 244

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY--ILITDKH----KIPALYKHRD 113
                 E  A +L  + + + +P +N+  +  K F    I I  K         ++  R 
Sbjct: 245 VEELGNEAVAEVLVRSTLDKHRPVYNVTKK--KHFLNFGIFIDAKKGAEIDHVRIFPVRY 302

Query: 114 SSTIQGSYF-GPFASVDAVEKTI--NSLQRTFFLRSCADSVFRHRTR 157
            +     YF GP +    ++K +    L    FL       +   TR
Sbjct: 303 KAPD--FYFEGPKSIYPWLQKMMMSEGLDPHTFLLDRDREHYNKHTR 347


>gi|124262836|ref|YP_001023306.1| helicase-associated endonuclease for fork-structured DNA
           [Methylibium petroleiphilum PM1]
 gi|124262082|gb|ABM97071.1| helicase-associated endonuclease for fork-structured DNA
           [Methylibium petroleiphilum PM1]
          Length = 216

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + + G+GP R + ++  FG+V     ++ + LA + G+  K A K++   H
Sbjct: 163 EGLPGVGPGRAQAIIAHFGSVHAALVATEQELAGVPGLGAKTAKKVHEVLH 213


>gi|157373515|ref|YP_001472115.1| ERCC4 domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157315889|gb|ABV34987.1| ERCC4 domain protein [Shewanella sediminis HAW-EB3]
          Length = 212

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KRRK      L  +  +GP   R LL+ F +V+ +  +S + L  +EGI ++ A KI   
Sbjct: 150 KRRKNRQLFILQSLPEVGPRLARRLLKHFDSVEAVITASTDELIKVEGIGQERARKIREM 209

Query: 607 F 607
            
Sbjct: 210 L 210


>gi|193084204|gb|ACF09868.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
           II euryarchaeote KM3-136-D10]
          Length = 928

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L+ +  IGP   + LL  F ++++++++    L  + GI    A  I     
Sbjct: 876 LESLPNIGPTTAKRLLDHFKSIEVLTQADEAELCQVTGIGPTSARAILEVLR 927


>gi|327401381|ref|YP_004342220.1| cyclic nucleotide-binding protein [Archaeoglobus veneficus SNP6]
 gi|327316889|gb|AEA47505.1| cyclic nucleotide-binding protein [Archaeoglobus veneficus SNP6]
          Length = 210

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  I GIG  + + LL+ FG+V  +  ++   L  +EGI +K A +IY  
Sbjct: 154 LTAIPGIGVEKAKRLLEKFGSVYRVVNATIPELMRVEGIGEKQAKRIYYF 203


>gi|329896419|ref|ZP_08271518.1| excinuclease ABC subunit C [gamma proteobacterium IMCC3088]
 gi|328921839|gb|EGG29210.1| excinuclease ABC subunit C [gamma proteobacterium IMCC3088]
          Length = 240

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 12/220 (5%)

Query: 55  INNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYIL--ITDKHKIPALYKHR 112
           +  I    T  E+ ALL+E+  +K  +P FN  LR  K   +    + D      + K R
Sbjct: 4   VTRIECQTTADELSALLVESQAVKSEQPLFNRRLRK-KRALWTAELLADNEGY-CVVKPR 61

Query: 113 DSSTIQ--GSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGP 170
               ++  G  +G FA+   ++  + +      L      + R + R C   QIKRC G 
Sbjct: 62  KVEQVEQLGYCYGLFANQTQLKNWLRNHAAEHGLCLHRVGLDRGKGR-CFGRQIKRCDGA 120

Query: 171 CTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSH 230
           C GE S+E Y   + +             + +       +   + ++            +
Sbjct: 121 CCGEQSAEAYNAALLDLFAQFQLVVWPYHQPLWVREWGDSSHSESKAPQGTAQGWHVFHY 180

Query: 231 I-----QNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQ 265
                      +       +    +++   I   F    +
Sbjct: 181 WTYLGSFERPKAGLEADFDWDEVVDRDAYRILLSFLRNDR 220


>gi|78189408|ref|YP_379746.1| SMF protein [Chlorobium chlorochromatii CaD3]
 gi|78171607|gb|ABB28703.1| SMF protein [Chlorobium chlorochromatii CaD3]
          Length = 385

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ GIG  R + LL  +G +  +  ++   L  I GI + +A ++YN FH    +
Sbjct: 9   LSQVPGIGAARIKALLTHWGNLSFLQHATIADLTHINGIGETLATELYNTFHNAAKN 65


>gi|284161344|ref|YP_003399967.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631]
 gi|284011341|gb|ADB57294.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 736

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 62/396 (15%), Positives = 123/396 (31%), Gaps = 32/396 (8%)

Query: 217 SAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKT 276
             +            ++      N  D   +   +  +         GQ        L+ 
Sbjct: 348 EKLKEIVSSQLKEKPESRIIVFTNFRDTAEVISRELQSMGVPAVRFVGQANRENDRGLRQ 407

Query: 277 DSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGE 336
             +    +       +        E  L   E +     E    +    + K    ++ E
Sbjct: 408 REQVEIVERFRAGDIKVLVATSVGEEGLDIPEVDLVVFYEAIPSEIRSIQRKGRTGRKKE 467

Query: 337 KRKIIEQALINAHRSHTQK-LSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSA 395
            R ++         ++    L  E +    L+D    F L    K +E +   ++     
Sbjct: 468 GRIVVLVTKGTRDEAYFYISLRKERAMFERLRDLK--FMLKRTQKSLEEFKVGNLK-DVT 524

Query: 396 VGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKK 455
           V        +  VK  Y K N+   +       +    +  +     + +  +     + 
Sbjct: 525 VYVDSREMRSEVVKKLYEKANVRVGNFNADYVVSDRVAIERKTADDFVDSIIDRRLFDQL 584

Query: 456 QEYSFPSWPDVVILDGGKGQL----SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF 511
            E        V+I++G         +A +G L  + V+  I +I   K P+ +A   +F 
Sbjct: 585 IELKKHYLKPVLIVEGDGIYRRLNPNAIRGALATVIVDFGIPVI-FTKSPEETA---EFI 640

Query: 512 VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLD----EINGIGPLR 567
           V       L     +                + H  + K      ++     I+ IGP+ 
Sbjct: 641 VSLARREQLAKDREV----------------SPHYGKTKMTLKEQMEYVVSSISDIGPVI 684

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            R LL+ F T++ I+++S E L  +  + KK A KI
Sbjct: 685 ARNLLEHFQTIENIAKASVEDLMKVPKVGKKTAEKI 720


>gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 453

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 4/189 (2%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
            + +P   G+Y + D  G++LY+ K+ N++KR+  +        R   +  Q+  + + +
Sbjct: 189 LDGLPNQLGIYYLYDKKGKLLYMSKSKNIRKRVNEHFTGEGK--RDIFLQQQVGKVMYEL 246

Query: 63  TCTEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYF 122
           T T++ A L +    K +   F    +  K+FP+ L++ K K   L    +  T +    
Sbjct: 247 TGTDLIATLKQEEEHKHITVHF-KTKKKKKTFPFALVSHKDKRGYLCLSVELRTPKQEAL 305

Query: 123 GPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYME 182
             F S +     +  +   + L +  +   + RT  C    I +C+G C G+ + E Y +
Sbjct: 306 AIFESQEEGLNLLFEMTERYELCTKLNGFSQARTY-CYNHSIGKCAGACMGDEAVEDYNQ 364

Query: 183 FVHEAKKFL 191
            VH+A +  
Sbjct: 365 RVHQALEHY 373


>gi|167750769|ref|ZP_02422896.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
 gi|167656204|gb|EDS00334.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
          Length = 660

 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I GIG    +LL++ FG+++ +S +SPE ++++E     +A  I+   H+
Sbjct: 509 GIKGIGQKNAQLLMKHFGSIEKLSETSPEEISAVENFGDILANNIFTALHE 559


>gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
 gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
          Length = 684

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 19/149 (12%)

Query: 464 PDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMR 523
           PD   L         ++  +    +  +   + + +G  R    + + ++K + + L+  
Sbjct: 434 PDCPALLREGLIHFCSRDAMNIEGLGEQWITVLLDRGLVR-THADLYRLRKSDLIQLDRM 492

Query: 524 DPIL--YFIQRLRDEAHRFAITTHRKRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTV 578
              L    +  +++              K+ +   L     I  +G    + L + FGT+
Sbjct: 493 GDKLADKLLHNIQE-------------SKRNSLERLLFGLGIRHVGEKAAKTLAEHFGTI 539

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHF 607
             +  +S E L ++  I  K+A  I  +F
Sbjct: 540 DALMSASEEELMAVPDIGPKVAQSIRQYF 568


>gi|269792727|ref|YP_003317631.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100362|gb|ACZ19349.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 673

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I G+G    + L   FG ++ +  +S E LAS+EG+   +A  + + F  +++
Sbjct: 511 GIPGVGERTAQDLADRFGRLEALMDASEEELASVEGVGPVVARSVRDFFRNDST 564


>gi|222099565|ref|YP_002534133.1| DNA ligase [Thermotoga neapolitana DSM 4359]
 gi|254781438|sp|B9K734|DNLJ_THENN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221571955|gb|ACM22767.1| DNA ligase [Thermotoga neapolitana DSM 4359]
          Length = 693

 Score = 67.1 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    ++L + F +++ I+ +S ETL  I GI  +IA  I  +F  
Sbjct: 523 GIPMVGQKTAKILAEHFKSLEAIAEASYETLKDIPGIGPEIARSIVEYFRN 573


>gi|148269959|ref|YP_001244419.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
 gi|170288644|ref|YP_001738882.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
 gi|190359298|sp|A5IKX0|DNLJ_THEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781442|sp|B1LA51|DNLJ_THESQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147735503|gb|ABQ46843.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
 gi|170176147|gb|ACB09199.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
          Length = 688

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    ++L + F +++ I+ +S ETL  I GI  +IA  I  +F  
Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRN 568


>gi|289677235|ref|ZP_06498125.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae FF5]
          Length = 41

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           LL+ FG ++ +SR+S + +A   GISKK+A  IY + H  
Sbjct: 2   LLKHFGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 41


>gi|281412160|ref|YP_003346239.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
 gi|281373263|gb|ADA66825.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
          Length = 688

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    ++L + F +++ I+ +S ETL  I GI  +IA  I  +F  
Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRN 568


>gi|312137159|ref|YP_004004496.1| dead/deah box helicase domain protein [Methanothermus fervidus DSM
           2088]
 gi|311224878|gb|ADP77734.1| DEAD/DEAH box helicase domain protein [Methanothermus fervidus DSM
           2088]
          Length = 730

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            R+K  Y  ++ +  IG +  + LL+ FG+VK +  +S + L  +EGI +KIA  I  
Sbjct: 666 LREKQLY-VIESLPHIGAVNAKKLLRKFGSVKNVINASEKELMKVEGIGEKIAKDIKE 722


>gi|15642875|ref|NP_227916.1| DNA ligase [Thermotoga maritima MSB8]
 gi|7674016|sp|Q9WXV5|DNLJ_THEMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4980590|gb|AAD35194.1|AE001696_8 DNA ligase [Thermotoga maritima MSB8]
          Length = 688

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    ++L + F +++ I+ +S ETL  I GI  +IA  I  +F  
Sbjct: 518 GIPMVGQKTAKILAEHFKSLEAIADASYETLKDIPGIGPEIAKSIVEYFRN 568


>gi|317051097|ref|YP_004112213.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
 gi|316946181|gb|ADU65657.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
          Length = 660

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 30/54 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    +LL + FG+++ + ++S E L ++E + + +A  IY+   +  S
Sbjct: 507 GIRHVGKKTAQLLARHFGSMERLMQASIEELTAVEEVGEIVARSIYSFLREPAS 560


>gi|117927902|ref|YP_872453.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
 gi|166215382|sp|A0LSQ7|DNLJ_ACIC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117648365|gb|ABK52467.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
          Length = 695

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L + FG++  I  +S + LA++EG+ + IA  I + F
Sbjct: 532 SIRHVGPTAARALAREFGSIDAIRNASVDELAAVEGVGRVIAESIRDWF 580


>gi|217077826|ref|YP_002335544.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
 gi|254781437|sp|B7IDX6|DNLJ_THEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217037681|gb|ACJ76203.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
          Length = 665

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA  +PL        I  +G    ++L   F ++K +S++S + L SIEGI  ++A  I 
Sbjct: 499 KAKNTPLYRVIIGLGIPLVGEKTAKILADKFKSIKALSQASYDELTSIEGIGPEVAKNII 558

Query: 605 NHFHKNTS 612
            +F    +
Sbjct: 559 EYFKNEKT 566


>gi|307297347|ref|ZP_07577153.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916607|gb|EFN46989.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 665

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  +PL        I G+G    + L   FG+++ +  +  + L ++ GI +++A  I
Sbjct: 500 QKSRSNPLFKLITGLGIPGVGSKTSKDLANYFGSLRGLVSADEKELRNVSGIGEQLAKDI 559

Query: 604 YNHF 607
             +F
Sbjct: 560 KRYF 563


>gi|84488838|ref|YP_447070.1| Hef nuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372157|gb|ABC56427.1| predicted ERCC4-like helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 752

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + + GIGP+  + LL+ F  VK I  +S   L  +EGI +K A  I +
Sbjct: 697 ESLPGIGPVSAKNLLRHFKNVKNIVNASKNELKDVEGIGEKTATNIID 744


>gi|288561345|ref|YP_003424831.1| Hef nuclease [Methanobrevibacter ruminantium M1]
 gi|288544055|gb|ADC47939.1| Hef nuclease [Methanobrevibacter ruminantium M1]
          Length = 842

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            ++ +  IGP+  + LL+ FG+VK + ++  + L  ++GI KK A  I  
Sbjct: 774 IIESLPNIGPVHAKNLLEHFGSVKAVLQADEKQLQEVDGIGKKTAKSIKE 823


>gi|330984243|gb|EGH82346.1| hypothetical protein PLA107_04349 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 613

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            + GIG      L   FG++  +  +S + +  ++GI  K A +I+   H
Sbjct: 553 SLPGIGAGNATKLFSHFGSIHAVMTASAKEIMGVKGIGPKTAQRIHELIH 602


>gi|21227489|ref|NP_633411.1| Hef nuclease [Methanosarcina mazei Go1]
 gi|20905864|gb|AAM31083.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei
           Go1]
          Length = 864

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I+ IGP   R LL  FG+V+ + R+  E L  ++ I  K A +I    
Sbjct: 810 SISNIGPKAARNLLSYFGSVEAVMRADIEELKKVKQIGPKTAARIREVL 858


>gi|126179364|ref|YP_001047329.1| Hef nuclease [Methanoculleus marisnigri JR1]
 gi|125862158|gb|ABN57347.1| helicase domain protein [Methanoculleus marisnigri JR1]
          Length = 751

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 546 RKRR-KKAAYSP-------LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           RK   KK+  S        L     +G    RLLL+ FG++K I  + PE LA++ GI +
Sbjct: 677 RKVHPKKSYRSVREEQEYALAAFPNVGLKSARLLLEHFGSLKAIVDAEPEELAAVHGIGE 736

Query: 598 KIACKIYN 605
           K A  I++
Sbjct: 737 KTARAIWD 744


>gi|330508988|ref|YP_004385416.1| DEAD/DEAH box helicase domain-containing protein [Methanosaeta
           concilii GP-6]
 gi|328929796|gb|AEB69598.1| DEAD/DEAH box helicase domain protein [Methanosaeta concilii GP-6]
          Length = 762

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           I  +GP   R LL+ FG+++ +  +S E L  ++ +  KIA +I  
Sbjct: 709 IPSVGPSVARKLLRHFGSIEKVIAASKEELQEVDMVGPKIAERIRE 754


>gi|330959841|gb|EGH60101.1| putative DNA-binding protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 233

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN------TSHTP 615
           G GP+  R LL  F +V  ++ +S + L +++GI  K A  I+   H            P
Sbjct: 161 GCGPVAARKLLNHFRSVFRVNNASIDELCAVKGIGPKKAQAIFEGIHYELPEGMSADDQP 220

Query: 616 T 616
           T
Sbjct: 221 T 221


>gi|146344019|ref|YP_001201875.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
 gi|146187831|emb|CAM96160.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
          Length = 233

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN------TSHTP 615
           G GP+  R LL  F +V  ++ +S + L +++GI  K A  I+   H            P
Sbjct: 161 GCGPVAARKLLNHFRSVFRVNNASIDELCAVKGIGPKKAQAIFEGIHYELPEGVSADDQP 220

Query: 616 T 616
           T
Sbjct: 221 T 221


>gi|147905540|ref|NP_001088772.1| hypothetical protein LOC496036 [Xenopus laevis]
 gi|56269183|gb|AAH87430.1| LOC496036 protein [Xenopus laevis]
          Length = 217

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 549 RKKAAY----SPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           RKK+      S L    +I G+G ++   LLQ F +++ +S +S   L S+ G  + IA 
Sbjct: 150 RKKSFQLPDASVLQTVQKIPGVGRVKALQLLQHFPSIQKLSNASVAQLESVLG--RAIAL 207

Query: 602 KIYNHFH 608
            I++ FH
Sbjct: 208 NIHSFFH 214


>gi|154248881|ref|YP_001409706.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
 gi|190359256|sp|A7HJG6|DNLJ_FERNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154152817|gb|ABS60049.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
          Length = 681

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 30/50 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+G    ++L + + +++ +S++  + L+ IEGI + IA  I  +F+
Sbjct: 511 GIPGVGEKIAKVLAKKYKSMEELSKADIKELSEIEGIGEDIAKNIVEYFN 560


>gi|221215451|ref|ZP_03588415.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
 gi|221164635|gb|EED97117.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
          Length = 691

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           KKA ++ L        I  +G    + L + FG++  I  ++ + L  +  +   +A  I
Sbjct: 518 KKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDELLEVNDVGPIVAESI 577

Query: 604 YNHFHKNTSHT 614
           +  F +  + T
Sbjct: 578 HQFFAEEHNRT 588


>gi|325957866|ref|YP_004289332.1| helicase domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329298|gb|ADZ08360.1| helicase domain protein [Methanobacterium sp. AL-21]
          Length = 769

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + +  IGP+  R LL+ F TV+ +  +S E L  ++GI  KIA  I
Sbjct: 700 ESLPNIGPVTARKLLEEFKTVRGVINASEEELKKVDGIGDKIAKNI 745


>gi|20095114|ref|NP_614961.1| Hef nuclease [Methanopyrus kandleri AV19]
 gi|19888409|gb|AAM02891.1| ERCC4-like helicase-nuclease [Methanopyrus kandleri AV19]
          Length = 741

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I G+GP   R LL  FG++  +  +SP  L  ++GI ++ A +I    
Sbjct: 692 IPGVGPELARRLLDEFGSIGDVVNASPSELKRVKGIGERKAREIRRFL 739


>gi|124027340|ref|YP_001012660.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456]
 gi|123978034|gb|ABM80315.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456]
          Length = 243

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +GP   R LL+ FGT++ I+ +S + L S+ GI +K A +IY  F+
Sbjct: 185 VGPTLARRLLERFGTLRRIANASVQELMSVRGIGEKRAREIYLIFN 230


>gi|209522379|ref|ZP_03270993.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
 gi|209497185|gb|EDZ97426.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
          Length = 688

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASLEELLEVNDVGPVVAESIH 576

Query: 605 NHFHKNTSHT 614
             F ++ + T
Sbjct: 577 QFFAEDHNRT 586


>gi|269127766|ref|YP_003301136.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
 gi|268312724|gb|ACY99098.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
          Length = 722

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   R L + FG++  I ++S E LA+++G+   IA  I   F ++
Sbjct: 557 SIRHVGPTAARALAREFGSIDAIMKASEEELAAVDGVGPAIAASIKRWFAED 608


>gi|163750735|ref|ZP_02157971.1| atp-dependent rna helicase, eif-4a family protein [Shewanella
           benthica KT99]
 gi|161329579|gb|EDQ00571.1| atp-dependent rna helicase, eif-4a family protein [Shewanella
           benthica KT99]
          Length = 212

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KR+K      L  +  +GP   + LL  F  ++ I  +    L  +EGI ++ A KI + 
Sbjct: 150 KRKKNRQLFILQSLPQVGPKLAKRLLSHFDNIEAIFTAPAAELRKVEGIGQEKAQKIRDV 209

Query: 607 F 607
            
Sbjct: 210 L 210


>gi|20088995|ref|NP_615070.1| Hef nuclease [Methanosarcina acetivorans C2A]
 gi|19913848|gb|AAM03550.1| helicase [Methanosarcina acetivorans C2A]
          Length = 821

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 549 RKKAAYSPLDE--------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
             K + S L E        I+ IGP   R LL  FG+VK + ++  E L  ++ I  K A
Sbjct: 749 HGKKSASTLSEQQEYLISSISNIGPKAARNLLLHFGSVKAVLQADTEELKKVKLIGPKTA 808

Query: 601 CKIYNHF 607
            +I    
Sbjct: 809 ARIKEVL 815


>gi|116753548|ref|YP_842666.1| Hef nuclease [Methanosaeta thermophila PT]
 gi|116664999|gb|ABK14026.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT]
          Length = 749

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
             S L    G+GP   R LL+ FG+V+ I  +S   L S++ +  K A +I  
Sbjct: 692 LISAL---PGVGPSVARNLLRHFGSVERIMTASEGELMSVDKVGPKTAARIRE 741


>gi|148643247|ref|YP_001273760.1| Hef nuclease [Methanobrevibacter smithii ATCC 35061]
 gi|222445478|ref|ZP_03607993.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349960|ref|ZP_05975377.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
           2374]
 gi|148552264|gb|ABQ87392.1| ERCC4-like helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222435043|gb|EEE42208.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860743|gb|EFC93041.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
           2374]
          Length = 772

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI-------YNHFH 608
            ++ +  IGP+  + LL+ FGTV  I  +S   L  +EGI KK A  I       Y +F 
Sbjct: 704 IIESLPNIGPVNAKNLLEHFGTVANIINASESQLQEVEGIGKKTAANIRKVVDSKYLYFQ 763

Query: 609 KNTSH 613
                
Sbjct: 764 NEIKE 768


>gi|115931315|ref|XP_001181183.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 226

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 547 KRRKKAAYSPLDE----INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           KRR  +  + L      I  +G +R + LLQ FG++K IS++S E L+++ G S   A  
Sbjct: 156 KRRPPSLDTSLLATVQLIPKLGSVRVKALLQKFGSIKNISQASQEELSAVVGASH--AKH 213

Query: 603 IYNHF-HKNTS 612
           I +   HK   
Sbjct: 214 IKSFLTHKTAP 224


>gi|115647907|ref|XP_798494.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 182

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 547 KRRKKAAYSPLDE----INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           KRR  +  + L      I  +G +R + LLQ FG++K IS++S E L+++ G S   A  
Sbjct: 112 KRRPPSLDTSLLATVQLIPKLGSVRVKALLQKFGSIKNISQASQEELSAVVGASH--AKH 169

Query: 603 IYNHF-HKNTS 612
           I +   HK   
Sbjct: 170 IKSFLTHKTAP 180


>gi|315095035|gb|EFT67011.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL060PA1]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|315083671|gb|EFT55647.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA2]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|314966144|gb|EFT10243.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA2]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|314957538|gb|EFT01641.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA1]
          Length = 724

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 563 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 611


>gi|314923733|gb|EFS87564.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL001PA1]
 gi|315104373|gb|EFT76349.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA2]
 gi|327328187|gb|EGE69956.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL103PA1]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|314919398|gb|EFS83229.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA1]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|313836700|gb|EFS74414.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA2]
 gi|314929893|gb|EFS93724.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL044PA1]
 gi|314972321|gb|EFT16418.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA3]
 gi|328907750|gb|EGG27514.1| NAD-dependent DNA ligase LigA [Propionibacterium sp. P08]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|313834239|gb|EFS71953.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL056PA1]
 gi|314924752|gb|EFS88583.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA3]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|313822055|gb|EFS59769.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA1]
 gi|313823710|gb|EFS61424.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA2]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|313793877|gb|EFS41901.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA1]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|313763487|gb|EFS34851.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA1]
 gi|313773641|gb|EFS39607.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL074PA1]
 gi|313801268|gb|EFS42519.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA2]
 gi|313808052|gb|EFS46533.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA2]
 gi|313811476|gb|EFS49190.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA1]
 gi|313813500|gb|EFS51214.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA1]
 gi|313816668|gb|EFS54382.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA1]
 gi|313819621|gb|EFS57335.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA2]
 gi|313826033|gb|EFS63747.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA1]
 gi|313829503|gb|EFS67217.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA2]
 gi|313831217|gb|EFS68931.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL007PA1]
 gi|313840009|gb|EFS77723.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL086PA1]
 gi|314914784|gb|EFS78615.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA4]
 gi|314920694|gb|EFS84525.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA3]
 gi|314930573|gb|EFS94404.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL067PA1]
 gi|314954471|gb|EFS98877.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA1]
 gi|314961961|gb|EFT06062.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA2]
 gi|314963768|gb|EFT07868.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA1]
 gi|314968405|gb|EFT12503.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA1]
 gi|314974093|gb|EFT18189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA1]
 gi|314976617|gb|EFT20712.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL045PA1]
 gi|314978931|gb|EFT23025.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA2]
 gi|314984280|gb|EFT28372.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA1]
 gi|314986627|gb|EFT30719.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA2]
 gi|314990983|gb|EFT35074.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA3]
 gi|315079616|gb|EFT51609.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA2]
 gi|315081153|gb|EFT53129.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL078PA1]
 gi|315087038|gb|EFT59014.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA3]
 gi|315089213|gb|EFT61189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA1]
 gi|315095437|gb|EFT67413.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL038PA1]
 gi|315099114|gb|EFT71090.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA2]
 gi|315100402|gb|EFT72378.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA1]
 gi|315109094|gb|EFT81070.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA2]
 gi|327328505|gb|EGE70267.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA2]
 gi|327329632|gb|EGE71388.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA3]
 gi|327334143|gb|EGE75857.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL097PA1]
 gi|327444292|gb|EGE90946.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA2]
 gi|327444828|gb|EGE91482.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA1]
 gi|327446317|gb|EGE92971.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA2]
 gi|327452096|gb|EGE98750.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL092PA1]
 gi|327454866|gb|EGF01521.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA3]
 gi|327457850|gb|EGF04505.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA2]
 gi|328752459|gb|EGF66075.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL020PA1]
 gi|328755302|gb|EGF68918.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA1]
 gi|328758217|gb|EGF71833.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA2]
 gi|328759940|gb|EGF73524.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL099PA1]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|289428790|ref|ZP_06430473.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
 gi|289158188|gb|EFD06408.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
          Length = 753

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 592 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 640


>gi|282854737|ref|ZP_06264072.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
 gi|282582319|gb|EFB87701.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
 gi|314982008|gb|EFT26101.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA3]
 gi|315090823|gb|EFT62799.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA4]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|289426325|ref|ZP_06428068.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
 gi|295131143|ref|YP_003581806.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
 gi|289153053|gb|EFD01771.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
 gi|291375741|gb|ADD99595.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
 gi|332676019|gb|AEE72835.1| DNA ligase [Propionibacterium acnes 266]
          Length = 753

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 592 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 640


>gi|161621794|ref|YP_056321.2| NAD-dependent DNA ligase LigA [Propionibacterium acnes KPA171202]
 gi|315106904|gb|EFT78880.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA1]
          Length = 740

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 579 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 627


>gi|81611354|sp|Q6A7A2|DNLJ_PROAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50840696|gb|AAT83363.1| DNA ligase [Propionibacterium acnes KPA171202]
          Length = 772

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V+ I  +S E LA ++G+ + IA  +   F
Sbjct: 611 SIRHVGPTAARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWF 659


>gi|156937851|ref|YP_001435647.1| ERCC4 domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156566835|gb|ABU82240.1| ERCC4 domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 246

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            G+GP     LL+ FG+V+ +  +S   L+ +EG+    A +I    
Sbjct: 178 PGVGPKLAEKLLERFGSVRAVFNASVAELSKVEGLGTNKAQEIVKVL 224


>gi|147920338|ref|YP_685889.1| Hef nuclease [uncultured methanogenic archaeon RC-I]
 gi|110621285|emb|CAJ36563.1| putative type III restriction-modification system, restriction
           subunit [uncultured methanogenic archaeon RC-I]
          Length = 792

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +GP+  + LL+ FG+VK I+ +S E L ++E +  K A +I  
Sbjct: 740 VGPVIAKNLLRHFGSVKKIAEASAEELTAVERVGPKTAARIRE 782


>gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4]
 gi|166215568|sp|A4JF81|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4]
          Length = 691

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLDPIMDASIEELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|255658313|ref|ZP_05403722.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
 gi|260849632|gb|EEX69639.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
          Length = 675

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I GIG    R L+  FG++  ++++S E +  +  + +  A  I  +F+
Sbjct: 523 GIPGIGRTAARELMLHFGSIDALAKASEEEILEVRDMGEISAKAIVQYFN 572


>gi|298252820|ref|ZP_06976614.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1]
 gi|297533184|gb|EFH72068.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1]
          Length = 962

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 18/83 (21%)

Query: 550 KKAAYSPLDEI--NG----------------IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            +   S L+EI   G                +GP   RL+  +FG++  IS++S E L  
Sbjct: 757 SETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIEELTQ 816

Query: 592 IEGISKKIACKIYNHFHKNTSHT 614
           I+G+  +IA  +YN F +     
Sbjct: 817 IDGVGPEIAQAVYNWFQQAKDPA 839


>gi|297243530|ref|ZP_06927462.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD]
 gi|296888575|gb|EFH27315.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD]
          Length = 922

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 18/83 (21%)

Query: 550 KKAAYSPLDEI--NG----------------IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            +   S L+EI   G                +GP   RL+  +FG++  IS++S E L  
Sbjct: 717 SETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIEELTQ 776

Query: 592 IEGISKKIACKIYNHFHKNTSHT 614
           I+G+  +IA  +YN F +     
Sbjct: 777 IDGVGPEIAQAVYNWFQQAKDPA 799


>gi|283783245|ref|YP_003373999.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05]
 gi|283441754|gb|ADB14220.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05]
          Length = 962

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 18/83 (21%)

Query: 550 KKAAYSPLDEI--NG----------------IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            +   S L+EI   G                +GP   RL+  +FG++  IS++S E L  
Sbjct: 757 SETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIEELTQ 816

Query: 592 IEGISKKIACKIYNHFHKNTSHT 614
           I+G+  +IA  +YN F +     
Sbjct: 817 IDGVGPEIAQAVYNWFQQAKDPA 839


>gi|291519153|emb|CBK74374.1| DNA ligase, NAD-dependent [Butyrivibrio fibrisolvens 16/4]
          Length = 651

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    + LL  F  ++ I   S E L  +  I +  A  IY++ H
Sbjct: 499 GIPNVGKAAAKALLGQFKDIEKIMELSEEELMQVNDIGEISAKSIYDYLH 548


>gi|325529285|gb|EGD06234.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49]
          Length = 691

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 19/93 (20%)

Query: 536 EAHRFAITTHRKRRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMI 581
           E  RFA     ++  +     L++              I  +G    + L + FG++  I
Sbjct: 501 ELDRFA-----EKSAQNLLDSLEKAKHTTRARFIYGLGIRHVGESTAKDLAKHFGSLDPI 555

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             +S + L  +  +   +A  I+  F +  + T
Sbjct: 556 MNASIDELLEVNDVGPIVAESIHQFFAEEHNRT 588


>gi|149279365|ref|ZP_01885496.1| putative DNA processing Smf-like protein [Pedobacter sp. BAL39]
 gi|149229891|gb|EDM35279.1| putative DNA processing Smf-like protein [Pedobacter sp. BAL39]
          Length = 365

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
            L  I  +G +  + LL  FG+ + I  +S E L  + G+    A +I 
Sbjct: 8   ALTLIKNVGHVTAKALLSHFGSPERIFEASREELMEVPGVGMLTAREIL 56


>gi|332158155|ref|YP_004423434.1| Hef nuclease [Pyrococcus sp. NA2]
 gi|331033618|gb|AEC51430.1| Hef nuclease [Pyrococcus sp. NA2]
          Length = 749

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 29/109 (26%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           +AK  +     E       +AL L+ R       QR+                       
Sbjct: 660 MAKREQEERKKEVRIRGDKKALTLSER-------QRM----------------------I 690

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++ +  +     + LL+ FG+V+ +  +S   L  +EGI +KIA +I  
Sbjct: 691 VESLPHVSATLAKRLLKHFGSVEKVFTASVPELMKVEGIGEKIAREIRR 739


>gi|289810714|ref|ZP_06541343.1| nucleotide excision repair endonuclease [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
          Length = 41

 Score = 64.0 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 51 MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRD 90
          M+ Q   I +  T  E+ ALLLEA +IK  +P FN  LR 
Sbjct: 1  MLRQARRISWICTAGEMGALLLEARLIKEQQPLFNKRLRR 40


>gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1]
 gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1]
          Length = 750

 Score = 64.0 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
             +GP   R LL +FG++K I  +  E L  + GI  K A  IY 
Sbjct: 699 PDLGPKYARALLTAFGSLKAIIDAEKEELLQVPGIGAKKAEMIYE 743


>gi|116490507|ref|YP_810051.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1]
 gi|122277306|sp|Q04GN6|DNLJ_OENOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116091232|gb|ABJ56386.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1]
          Length = 684

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R+   +   + L  I G+G    ++L   F  ++ +  +  E +A I+G+ + +A
Sbjct: 511 AIDRSRQNSVERLITAL-GIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDGVGQVMA 569

Query: 601 CKIYNHFHKNT 611
             I  +F+  +
Sbjct: 570 DAIRQYFNSES 580


>gi|118587526|ref|ZP_01544950.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163]
 gi|118431977|gb|EAV38719.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163]
          Length = 684

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R+   +   + L  I G+G    ++L   F  ++ +  +  E +A I+G+ + +A
Sbjct: 511 AIDRSRQNSVERLITAL-GIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDGVGQVMA 569

Query: 601 CKIYNHFHKNT 611
             I  +F+  +
Sbjct: 570 DAIRQYFNSES 580


>gi|290889907|ref|ZP_06552994.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429]
 gi|290480517|gb|EFD89154.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429]
          Length = 684

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R+   +   + L  I G+G    ++L   F  ++ +  +  E +A I+G+ + +A
Sbjct: 511 AIDRSRQNSVERLITAL-GIRGVGAKAAKVLAAHFKNLRNLQNAGAEEIAEIDGVGQVMA 569

Query: 601 CKIYNHFHKNT 611
             I  +F+  +
Sbjct: 570 DAIRQYFNSES 580


>gi|186476101|ref|YP_001857571.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
 gi|254781277|sp|B2JID1|DNLJ_BURP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|184192560|gb|ACC70525.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
          Length = 683

 Score = 63.6 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  ++ E L  +  +   +A  I+
Sbjct: 511 KAKHTTLARFIYALGIRHVGESTAKDLARHFGSLDPIMSATVEELLEVNDVGPIVAEAIH 570

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 571 QFFAEEHNRT 580


>gi|187776813|ref|ZP_02993286.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
           15579]
 gi|187775472|gb|EDU39274.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
           15579]
          Length = 664

 Score = 63.6 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G      L+  F T++ I  ++ E L  +  + + +A  +Y+ F   
Sbjct: 513 GIPNVGKKTANDLVMKFKTLENIESATIEELVEVPDVGEIVAKSVYDFFKDE 564


>gi|327401630|ref|YP_004342469.1| helicase domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317138|gb|AEA47754.1| helicase domain protein [Archaeoglobus veneficus SNP6]
          Length = 746

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           I+ IGP+  R LL+ F T++ I+ +S E L  +  I KK A KI  
Sbjct: 687 ISDIGPVIARNLLEHFQTIERIATASEEELMKVPKIGKKTAEKIRK 732


>gi|282162816|ref|YP_003355201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
 gi|282155130|dbj|BAI60218.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
          Length = 765

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +GP+  + LL+ FG+VK I  +S E L  ++ + +K A KI  
Sbjct: 713 VGPVISKNLLRHFGSVKNIVSASKEELMEVDKVGEKTAAKIRE 755


>gi|221198328|ref|ZP_03571374.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
 gi|221208267|ref|ZP_03581271.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
 gi|221171915|gb|EEE04358.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
 gi|221182260|gb|EEE14661.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
          Length = 691

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  ++ + L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|161524425|ref|YP_001579437.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
 gi|189350820|ref|YP_001946448.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
 gi|254781276|sp|A9AIK9|DNLJ_BURM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160341854|gb|ABX14940.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
 gi|189334842|dbj|BAG43912.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
          Length = 691

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  ++ + L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMNATIDELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|150388066|ref|YP_001318115.1| DNA protecting protein DprA [Alkaliphilus metalliredigens QYMF]
 gi|149947928|gb|ABR46456.1| DNA protecting protein DprA [Alkaliphilus metalliredigens QYMF]
          Length = 378

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           L E+ GIGP+ ++ LL    + K I  +S E L ++ GI   +A +I
Sbjct: 7   LSEVKGIGPVMQKRLLAYLQSPKAIYTASSEELMNVPGIGCHLAEEI 53


>gi|312131728|ref|YP_003999068.1| DNA ligase, nad-dependent [Leadbetterella byssophila DSM 17132]
 gi|311908274|gb|ADQ18715.1| DNA ligase, NAD-dependent [Leadbetterella byssophila DSM 17132]
          Length = 680

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 21/87 (24%)

Query: 542 ITTHRKRRKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRS 584
           I+     ++K   + L+ I               GI   G    + L   F +++ +  +
Sbjct: 496 ISF----KEKTVKNILEGIAKSKEEPLAKLLFGIGIRFVGETTAQKLAAHFKSMQGLMNA 551

Query: 585 SPETLASIEGISKKIACKIYNHFHKNT 611
           + E L ++  + +K+A  I ++F   +
Sbjct: 552 NYEELLAVPDVGEKVAQSIRDYFQSES 578


>gi|302348186|ref|YP_003815824.1| Repair endonuclease XPF [Acidilobus saccharovorans 345-15]
 gi|302328598|gb|ADL18793.1| Repair endonuclease XPF [Acidilobus saccharovorans 345-15]
          Length = 252

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +   GIG      +L+ FG+++    +S   LAS+EG+ +  A +I     
Sbjct: 172 ESFPGIGAKTAERILEKFGSLESFFNASLAELASVEGVGESKAARIKELLK 222


>gi|255281707|ref|ZP_05346262.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
 gi|255267774|gb|EET60979.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
          Length = 674

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I G+G    R L+  FGT++ ++ +S E L S+  I    A  I ++F +  +
Sbjct: 518 GIQGVGKATARSLMSHFGTIEKLAGASQEELESVSDIGSISAEAIRSYFAEPDN 571


>gi|255310946|ref|ZP_05353516.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276]
 gi|255317247|ref|ZP_05358493.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276s]
 gi|296435662|gb|ADH17836.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9768]
 gi|296436585|gb|ADH18755.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11222]
 gi|296437522|gb|ADH19683.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11074]
 gi|297140021|gb|ADH96779.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9301]
          Length = 663

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK     L     I  +G      L   FGT+  +  +S + L SIEGI  K+A  I   
Sbjct: 496 KKVTLDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555

Query: 607 F--HKNTSH 613
           F  H+N   
Sbjct: 556 FSKHENREE 564


>gi|237802575|ref|YP_002887769.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/Jali20/OT]
 gi|231273809|emb|CAX10593.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/Jali20/OT]
          Length = 663

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK     L     I  +G      L   FGT+  +  +S + L SIEGI  K+A  I   
Sbjct: 496 KKVTLDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555

Query: 607 F--HKNTSH 613
           F  H+N   
Sbjct: 556 FSKHENREE 564


>gi|269123713|ref|YP_003306290.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
 gi|268315039|gb|ACZ01413.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
          Length = 675

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    +L++  FG+++ I  +S E L  IEGI +K++  IYN+F  N +
Sbjct: 519 GIEYVGKTTSKLVVSHFGSIENIINASLEELVLIEGIGEKVSLSIYNYFKDNEN 572


>gi|291530728|emb|CBK96313.1| DNA ligase, NAD-dependent [Eubacterium siraeum 70/3]
          Length = 660

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 31/51 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I GIG    +LL+++FG+++ +S +S E ++++E     +A  I+   H+
Sbjct: 509 GIKGIGQKNAQLLMKNFGSIEKLSETSSEEISAVENFGDILANNIFTALHE 559


>gi|308235729|ref|ZP_07666466.1| DNA ligase (NAD(+)) [Gardnerella vaginalis ATCC 14018]
 gi|311114720|ref|YP_003985941.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019]
 gi|310946214|gb|ADP38918.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019]
          Length = 960

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +GP   RL+   FG+++ IS++S E L  I+G+  +IA  +Y+ F K+ +  
Sbjct: 786 LGPPTARLIAARFGSIENISKASVEDLTQIDGVGPEIAQAVYDWFEKSKNPQ 837


>gi|300856841|ref|YP_003781825.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
 gi|300436956|gb|ADK16723.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
          Length = 664

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   +K   +   + L  I+ +G    + L++ F ++  +  +  + +  +  I    A
Sbjct: 496 AIENSKKNEPQRLLASL-GISNVGKSTAKELMKYFKSIDNLINADIDEIKKVSDIGDISA 554

Query: 601 CKIYNHFHKNTS 612
             I+ +F    +
Sbjct: 555 SAIFEYFKNEDN 566


>gi|294673321|ref|YP_003573937.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23]
 gi|294473291|gb|ADE82680.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23]
          Length = 674

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    +LL + F  +  +  +  E L  IEGI + +A  I  +FH   +
Sbjct: 524 VGETSAKLLARHFKNIDALMNAGIEELQEIEGIGEVMAKSIITYFHTEEN 573


>gi|196047608|ref|ZP_03114816.1| putative excinuclease ABC subunit [Bacillus cereus 03BB108]
 gi|196021579|gb|EDX60278.1| putative excinuclease ABC subunit [Bacillus cereus 03BB108]
          Length = 225

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 23/88 (26%)

Query: 8  ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
          +  GVY + D   R++YVGKA +L+ RI+ + + + +T        Q+ ++ F       
Sbjct: 19 KQSGVYLIRDKGNRIVYVGKAVDLKSRIRDHFNGHTNT--------QVYSVFFYEV---- 66

Query: 68 EALLLEANMIK----------RLKPRFN 85
           A+++E + IK            KP FN
Sbjct: 67 -AVIIENSSIKRSMIETNLMFEYKPVFN 93


>gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315]
 gi|254781275|sp|B4ECN6|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315]
          Length = 691

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
 gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
          Length = 691

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
 gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
          Length = 691

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|172060972|ref|YP_001808624.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
 gi|254781273|sp|B1YSH2|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
          Length = 691

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
 gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
          Length = 691

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD]
 gi|122322835|sp|Q0BE10|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD]
          Length = 691

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|325681379|ref|ZP_08160905.1| DNA ligase (NAD+) [Ruminococcus albus 8]
 gi|324106869|gb|EGC01159.1| DNA ligase (NAD+) [Ruminococcus albus 8]
          Length = 665

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + LD       I GIG    +LL   FG +  I R++   +A IEG    +A  +Y
Sbjct: 501 KSKSNSLDRLIFGLGIRGIGQASAKLLCAKFGGIDSIMRATAAEIAEIEGFGDIMADSVY 560

Query: 605 NHFHKN 610
           + FH+ 
Sbjct: 561 SAFHEE 566


>gi|291557760|emb|CBL34877.1| DNA ligase, NAD-dependent [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I GIG    +LL++ FG+++ +S + PE ++++E     +A  I+   H+
Sbjct: 509 GIKGIGQKNAQLLMKHFGSIEKLSETLPEEISAVENFGDILANNIFTALHE 559


>gi|170692136|ref|ZP_02883299.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
 gi|170142566|gb|EDT10731.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
          Length = 693

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 522 KARHTTLSRFIYALGIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVNDVGPVVAESIH 581

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 582 QFFAEEHNRT 591


>gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu]
          Length = 691

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  ++ E L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLNPIMDATVEELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|296158912|ref|ZP_06841740.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
 gi|295890787|gb|EFG70577.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
          Length = 688

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVNDVGPVVAESIH 576

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 577 QFFAEEHNRT 586


>gi|323526494|ref|YP_004228647.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1001]
 gi|323383496|gb|ADX55587.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1001]
          Length = 688

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMEASVEALLEVNDVGPVVAESIH 576

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 577 QFFAEEHNRT 586


>gi|89898194|ref|YP_515304.1| NAD-dependent DNA ligase LigA [Chlamydophila felis Fe/C-56]
 gi|123735917|sp|Q254X9|DNLJ_CHLFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89331566|dbj|BAE81159.1| DNA ligase [Chlamydophila felis Fe/C-56]
          Length = 662

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 551 KAAYSPLD------EIN--GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           KA  +PL+       I   GIG      L Q F ++  +  +S E L  I+GI  K+A  
Sbjct: 497 KAKSAPLERFIAALGIPYVGIGGA--NALAQHFLSLDAVMSASLEELKVIDGIGSKVAES 554

Query: 603 IYNHFHKNTS 612
           I ++FH++ +
Sbjct: 555 IVDYFHQSDN 564


>gi|161723110|ref|YP_288664.2| NAD-dependent DNA ligase LigA [Thermobifida fusca YX]
          Length = 731

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP     L + F ++  I+++S E L ++EGI   IA  I + F
Sbjct: 561 SIRHVGPRAAEDLARHFRSLDAIAQASEEELEAVEGIGPTIARSIVDWF 609


>gi|123774771|sp|Q47SC6|DNLJ_THEFY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71914739|gb|AAZ54641.1| NAD-dependent DNA ligase [Thermobifida fusca YX]
          Length = 745

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP     L + F ++  I+++S E L ++EGI   IA  I + F
Sbjct: 575 SIRHVGPRAAEDLARHFRSLDAIAQASEEELEAVEGIGPTIARSIVDWF 623


>gi|167837047|ref|ZP_02463930.1| DNA ligase, NAD-dependent [Burkholderia thailandensis MSMB43]
          Length = 691

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  +  +S + L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPVMDASIDELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160]
 gi|76556687|emb|CAI48259.1| probable nuclease domain protein/ probable ATP-dependent helicase
           [Natronomonas pharaonis DSM 2160]
          Length = 845

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 26/43 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +GP+  R LL+ FG+V+ +  +  E L +++G+    A +I +
Sbjct: 793 VGPVTARALLEHFGSVEAVMSADEEALQAVDGVGDVTAERIRD 835


>gi|28211984|ref|NP_782928.1| NAD-dependent DNA ligase LigA [Clostridium tetani E88]
 gi|75541732|sp|Q891I0|DNLJ_CLOTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28204427|gb|AAO36865.1| NAD-dependent DNA ligase [Clostridium tetani E88]
          Length = 668

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK   S       I  +G    R L++SF T+  I  ++ E L S++ I + +A  +   
Sbjct: 504 KKPKLSSFIYALSIPNVGVKTARDLVKSFKTLDNIKNATIEELTSVKDIGEIVANSVIEF 563

Query: 607 FHKN 610
           F + 
Sbjct: 564 FKQE 567


>gi|84498237|ref|ZP_00997034.1| DNA ligase [Janibacter sp. HTCC2649]
 gi|84381737|gb|EAP97620.1| DNA ligase [Janibacter sp. HTCC2649]
          Length = 731

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +GP   R L Q FG++  I  ++ E L+ +EG+   IA  + + F +  + 
Sbjct: 565 SIRHVGPTAARALAQHFGSMDGIRAATVEELSGVEGVGGIIAESVRDWFDREGNE 619


>gi|297526642|ref|YP_003668666.1| ERCC4 domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255558|gb|ADI31767.1| ERCC4 domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 234

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +GP   R LL+ F T++ I+ +S + L  +EGI +K A +IY  F+
Sbjct: 182 VGPTLARKLLREFKTLRNIANASVKELMVVEGIGEKRANEIYLIFN 227


>gi|228904740|ref|ZP_04068794.1| DNA ligase [Bacillus thuringiensis IBL 4222]
 gi|228854754|gb|EEM99358.1| DNA ligase [Bacillus thuringiensis IBL 4222]
          Length = 656

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           G      LL+ +  +  I+ +S E L  IE I   +A  I+++FH   +
Sbjct: 509 GKGTAERLLRYYNNIDDIANASVEDLMRIEDIGSAVAQSIFDYFHNERN 557


>gi|114051485|ref|NP_001039527.1| Fanconi anemia-associated protein of 24 kDa [Bos taurus]
 gi|122063385|sp|Q2KHY5|FAP24_BOVIN RecName: Full=Fanconi anemia-associated protein of 24 kDa
 gi|86438532|gb|AAI12838.1| Fanconi anemia-associated protein, 24 kDa [Bos taurus]
 gi|296477806|gb|DAA19921.1| fanconi anemia-associated protein of 24 kDa [Bos taurus]
          Length = 215

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 544 THRKRRKKAAYSPLD----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
             RK+R   +   L     +I G+G ++  LLLQ F +++ +S +S   L ++ G     
Sbjct: 146 FLRKKRALVSEPALLRSVQQIPGVGKVKAPLLLQRFPSIQQLSNASLRELEAVVG--PAA 203

Query: 600 ACKIYNHF 607
           A +I+  F
Sbjct: 204 AQRIHAFF 211


>gi|126668716|ref|ZP_01739666.1| ERCC4-like helicase-nuclease [Marinobacter sp. ELB17]
 gi|126626816|gb|EAZ97463.1| ERCC4-like helicase-nuclease [Marinobacter sp. ELB17]
          Length = 380

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
                 L+ I G+       LL+ FG++K I+ +S   LA ++G+  K A +I +  
Sbjct: 322 NQKIHVLESIPGVSTHIAETLLERFGSIKAIAAASQGELARVKGVGLKRAREISDVL 378


>gi|269836970|ref|YP_003319198.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
 gi|269786233|gb|ACZ38376.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
          Length = 680

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 554 YSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            S L     I  +G    RLL Q F ++  I+ +S E L  I G  + +A  +Y+ F +
Sbjct: 511 LSRLLHALGIRHVGERNARLLAQHFNSMDRIAAASIEELQGIPGFGRVVAEAVYDFFRE 569


>gi|51893963|ref|YP_076654.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
 gi|81388077|sp|Q67KI8|DNLJ_SYMTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51857652|dbj|BAD41810.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
          Length = 673

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    RLL   FG+++ I ++  + L +I G+  KIA  + N+F
Sbjct: 519 GIRHVGERAARLLADHFGSMEAIEQAGLDELTAIPGLGPKIAESVKNYF 567


>gi|222480951|ref|YP_002567188.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222453853|gb|ACM58118.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 836

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K R +     +  I  IGP+  R LL+ FGTV+ +  +  + L  ++G+    A +I  
Sbjct: 771 KTRAEQQEYVVSSIADIGPVTARTLLEHFGTVEAVMTAPEDDLLEVDGVGPVTAERIRE 829


>gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4]
          Length = 691

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S + L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASIDELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEAHNRT 588


>gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH]
          Length = 691

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S + L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASIDELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEAHNRT 588


>gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
 gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
 gi|123753789|sp|Q2SX03|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
          Length = 691

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S + L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASIDELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEAHNRT 588


>gi|261337889|ref|ZP_05965773.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093]
 gi|270277364|gb|EFA23218.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093]
          Length = 906

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 19/84 (22%)

Query: 550 KKAAYSPLDEING-----------------IGPLRKRLLLQSFGTVKMISRSSPETLASI 592
            +   S L+EI                   +GP   RL+ Q FGT+  +  +S + L S+
Sbjct: 708 SETTRSLLEEIEHAKHAELDRVLVALSIRHVGPPTARLIAQRFGTLDALMHASKDELESV 767

Query: 593 EGISKKIACKIYNHFHKNTSHTPT 616
            GI  ++A  I + F    +  PT
Sbjct: 768 PGIGSEVAQAILDWF--ADADDPT 789


>gi|78100875|pdb|1X2I|A Chain A, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
           Pyrococcus Furiosus, Helix-Hairpin-Helix Domain
 gi|78100876|pdb|1X2I|B Chain B, Crystal Structure Of Archaeal XpfMUS81 HOMOLOG, HEF FROM
           Pyrococcus Furiosus, Helix-Hairpin-Helix Domain
          Length = 75

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + +  +     R LL+ FG+V+ +  +S   L  +EGI +KIA +I  
Sbjct: 17  EGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRR 64


>gi|189499391|ref|YP_001958861.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
 gi|189494832|gb|ACE03380.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
          Length = 382

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L  + G+GP R R L + FGT   I  +    LA I GI +K+A  I + F 
Sbjct: 18  VLSRVPGLGPARIRALKRQFGTSNAIFHADERALAVIPGIGRKLARTITDFFR 70


>gi|120611505|ref|YP_971183.1| DNA ligase [Acidovorax citrulli AAC00-1]
 gi|166215380|sp|A1TR21|DNLJ_ACIAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120589969|gb|ABM33409.1| DNA ligase, NAD-dependent [Acidovorax citrulli AAC00-1]
          Length = 732

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+ ++ L        I  +G    + L + FG +  I  +S E L  +  +   +A  I+
Sbjct: 564 KSKHTTLPRFLFGLGIRHVGEATAKDLARHFGGLDAIMDASVEQLLEVNDVGPVVAEAIH 623

Query: 605 NHF 607
             F
Sbjct: 624 TFF 626


>gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
 gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
          Length = 691

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S + L  +  +   +A  I+
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIDELLEVNDVGPIVAESIH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|167622342|ref|YP_001672636.1| ERCC4 domain-containing protein [Shewanella halifaxensis HAW-EB4]
 gi|167352364|gb|ABZ74977.1| ERCC4 domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 222

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           KR K      L  +  +GP   + LL  F +++ +  +  E L  +EGI ++ A  I
Sbjct: 150 KRHKNRQLFILQSLPQVGPKLAKRLLIHFESIEAVFTAPEEELLKVEGIGQEKARGI 206


>gi|296233486|ref|XP_002762034.1| PREDICTED: fanconi anemia-associated protein of 24 kDa-like
           [Callithrix jacchus]
          Length = 215

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +I G+G ++  LLLQ F +++ +S +S   L  + G  + +A +I+  F
Sbjct: 165 QIPGVGKVKAPLLLQKFPSIQKLSNASIRELEQVVG--QAVAQQIHAFF 211


>gi|255348508|ref|ZP_05380515.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70]
 gi|255503049|ref|ZP_05381439.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70s]
 gi|255506721|ref|ZP_05382360.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D(s)2923]
 gi|296434735|gb|ADH16913.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/150]
 gi|296438453|gb|ADH20606.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/11023]
          Length = 663

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK A   L     I  +G      L   FGT+  +  +S + L SIEGI  K+A  I   
Sbjct: 496 KKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555

Query: 607 F--HKNTSH 613
           F  H+N   
Sbjct: 556 FSKHENREE 564


>gi|189219712|ref|YP_001940353.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
 gi|254781365|sp|B3DWU2|DNLJ_METI4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189186570|gb|ACD83755.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
          Length = 689

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK   S L     I  IG      L + FGT+  +S ++ E L ++  I + +A  I N+
Sbjct: 525 KKKDLSRLIFGLGIPHIGQKASEDLARYFGTMDKLSHATEEELLNLPFIGEIMARSIVNY 584

Query: 607 FHKNTS 612
           F K  +
Sbjct: 585 FRKEAN 590


>gi|15604865|ref|NP_219649.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D/UW-3/CX]
 gi|7673995|sp|O84148|DNLJ_CHLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3328547|gb|AAC67737.1| DNA Ligase [Chlamydia trachomatis D/UW-3/CX]
 gi|289525187|emb|CBJ14662.1| NAD-dependent DNA ligase [Chlamydia trachomatis Sweden2]
 gi|297748276|gb|ADI50822.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-EC]
 gi|297749156|gb|ADI51834.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-LC]
          Length = 663

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK A   L     I  +G      L   FGT+  +  +S + L SIEGI  K+A  I   
Sbjct: 496 KKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555

Query: 607 F--HKNTSH 613
           F  H+N   
Sbjct: 556 FSKHENREE 564


>gi|18978387|ref|NP_579744.1| Hef nuclease [Pyrococcus furiosus DSM 3638]
 gi|18894225|gb|AAL82139.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
          Length = 764

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + +  +     R LL+ FG+V+ +  +S   L  +EGI +KIA +I  
Sbjct: 706 EGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRR 753


>gi|260911472|ref|ZP_05918061.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634401|gb|EEX52502.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 666

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    +LL + F ++  +  ++PE L  +EG+   IA  +   FH   +
Sbjct: 515 VGETTAKLLAKHFKSIDALMTATPEQLVEVEGVGTVIAESVVRFFHDEVN 564


>gi|237804493|ref|YP_002888647.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231272793|emb|CAX09699.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 663

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK A   L     I  +G      L   FGT+  +  +S + L SIEGI  K+A  I   
Sbjct: 496 KKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555

Query: 607 F--HKNTSH 613
           F  H+N   
Sbjct: 556 FSKHENREE 564


>gi|330466191|ref|YP_004403934.1| DNA ligase [Verrucosispora maris AB-18-032]
 gi|328809162|gb|AEB43334.1| DNA ligase, NAD-dependent [Verrucosispora maris AB-18-032]
          Length = 717

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L + F +++ I  +S E L+S++G+   IA  I   F
Sbjct: 552 SIRHVGPTAAQALARHFRSIEAIDNASEEELSSVDGVGPTIAASIREWF 600


>gi|307729327|ref|YP_003906551.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
 gi|307583862|gb|ADN57260.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
          Length = 688

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVNDVGPVVAESIH 576

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 577 QFFAEEHNRT 586


>gi|187924439|ref|YP_001896081.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
 gi|254781278|sp|B2T5K0|DNLJ_BURPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187715633|gb|ACD16857.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
          Length = 688

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVNDVGPVVAESIH 576

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 577 QFFAEEHNRT 586


>gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
 gi|123358676|sp|Q13XB0|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
          Length = 688

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVNDVGPVVAESIH 576

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 577 QFFAEEHNRT 586


>gi|161760708|ref|YP_062356.2| NAD-dependent DNA ligase LigA [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 755

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPL--DEINGIGPLRKRLL 571
            G+ + +  +   +  +  L            R  R K  +  L    I  +GP+  R L
Sbjct: 553 DGDEIAVPSKS-AIELLANL------------RAARTKPLWRILVSLNIRHVGPVAARAL 599

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              FG++  I  +S + LA+++G+   +A  + + F
Sbjct: 600 ADHFGSLDAIRAASRDELAAVDGVGGIVADAVLSWF 635


>gi|81390835|sp|Q6AEE5|DNLJ_LEIXX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50951550|gb|AAT89251.1| DNA ligase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 747

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPL--DEINGIGPLRKRLL 571
            G+ + +  +   +  +  L            R  R K  +  L    I  +GP+  R L
Sbjct: 545 DGDEIAVPSKS-AIELLANL------------RAARTKPLWRILVSLNIRHVGPVAARAL 591

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              FG++  I  +S + LA+++G+   +A  + + F
Sbjct: 592 ADHFGSLDAIRAASRDELAAVDGVGGIVADAVLSWF 627


>gi|304411681|ref|ZP_07393293.1| ERCC4 domain protein [Shewanella baltica OS183]
 gi|307306267|ref|ZP_07586012.1| ERCC4 domain protein [Shewanella baltica BA175]
 gi|304349869|gb|EFM14275.1| ERCC4 domain protein [Shewanella baltica OS183]
 gi|306911140|gb|EFN41567.1| ERCC4 domain protein [Shewanella baltica BA175]
          Length = 212

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KR+K      L  +  +GP     LL  F +V+ +  +S E L  + GI K  A KI   
Sbjct: 150 KRKKNQQLFILQSLPEVGPKLANKLLCHFASVEAVVTASEEALMQVGGIGKNKASKIREV 209

Query: 607 F 607
            
Sbjct: 210 L 210


>gi|166154367|ref|YP_001654485.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 434/Bu]
 gi|166155242|ref|YP_001653497.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335620|ref|ZP_07223864.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis L2tet1]
 gi|254781287|sp|B0B9Q4|DNLJ_CHLT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781289|sp|B0BBD3|DNLJ_CHLTB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|165930355|emb|CAP03841.1| NAD-dependent DNA ligase [Chlamydia trachomatis 434/Bu]
 gi|165931230|emb|CAP06795.1| NAD-dependent DNA ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 663

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK A   L     I  +G      L   FGT+  +  +S + L SIEGI  K+A  I   
Sbjct: 496 KKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAF 555

Query: 607 F--HKNTSH 613
           F  H+N   
Sbjct: 556 FSKHENREE 564


>gi|320160951|ref|YP_004174175.1| DNA ligase [Anaerolinea thermophila UNI-1]
 gi|319994804|dbj|BAJ63575.1| DNA ligase [Anaerolinea thermophila UNI-1]
          Length = 674

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R R      + L  I G+G +    L + F  +  +S+++ + L  IEG+   IA
Sbjct: 503 AIQNSRSRPLSRLITAL-GIRGVGEVMAGELAKHFKNLDALSKATVQQLMEIEGVGPNIA 561

Query: 601 CKIYNHF 607
             I   F
Sbjct: 562 QSIVEWF 568


>gi|152998915|ref|YP_001364596.1| ERCC4 domain-containing protein [Shewanella baltica OS185]
 gi|160873501|ref|YP_001552817.1| ERCC4 domain-containing protein [Shewanella baltica OS195]
 gi|151363533|gb|ABS06533.1| ERCC4 domain protein [Shewanella baltica OS185]
 gi|160859023|gb|ABX47557.1| ERCC4 domain protein [Shewanella baltica OS195]
 gi|315265730|gb|ADT92583.1| ERCC4 domain protein [Shewanella baltica OS678]
          Length = 212

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KR+K      L  +  +GP     LL  F +V+ +  +S E L  + GI K  A KI   
Sbjct: 150 KRKKNQQLFILQSLPEVGPKLANKLLCHFASVEAVVTASEEALMQVGGIGKNKASKIREV 209

Query: 607 F 607
            
Sbjct: 210 L 210


>gi|295676829|ref|YP_003605353.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
 gi|295436672|gb|ADG15842.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
          Length = 687

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  I+
Sbjct: 517 KAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDASLEALLEVNDVGPVVAESIH 576

Query: 605 NHFHKNTSHT 614
             F ++ + T
Sbjct: 577 QFFAEDHNRT 586


>gi|154150356|ref|YP_001403974.1| Hef nuclease [Candidatus Methanoregula boonei 6A8]
 gi|153998908|gb|ABS55331.1| helicase domain protein [Methanoregula boonei 6A8]
          Length = 745

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
             IG    RLLL  FG+V+ I  ++ E L +++GI +K   KI+ 
Sbjct: 694 PDIGLKNARLLLAHFGSVQGIVNATLEELVAVKGIGEKTGGKIFE 738


>gi|296330120|ref|ZP_06872602.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673365|ref|YP_003865037.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296152709|gb|EFG93576.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411609|gb|ADM36728.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 668

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L+       I  IG    + L   F +++ + ++S E L +I+ I +K+A  +
Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEELLAIDEIGEKMADAV 555

Query: 604 YNHFHKNT 611
             +FHK  
Sbjct: 556 ITYFHKEE 563


>gi|256832938|ref|YP_003161665.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603]
 gi|256686469|gb|ACV09362.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603]
          Length = 798

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +GP   R L   FG++  I  +S   LA+++G+   IA  +   F +   + 
Sbjct: 623 SIRHVGPTAARALATEFGSMDRIRAASVSELAAVDGVGSTIAESVVEWFREVDGNQ 678


>gi|268317536|ref|YP_003291255.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252]
 gi|262335070|gb|ACY48867.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252]
          Length = 385

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L  + G+GP R R LL  FG+ +    +    L  + GI  + A +I   
Sbjct: 32  ALTLVPGVGPGRIRALLARFGSAQAALHAPVAALVQVPGIGLQTARRIAAF 82


>gi|14591755|ref|NP_143722.1| Hef nuclease [Pyrococcus horikoshii OT3]
          Length = 748

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 29/109 (26%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           +AK  +     E     + +AL L  R       QR+                       
Sbjct: 659 MAKREQEERKREVRIRGEKKALTLAER-------QRM----------------------I 689

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++ +  +     R LL+ FG+V+ +  +S   L  +EGI +KIA +I  
Sbjct: 690 VESLPNVSTTLARRLLRHFGSVEKVFTASVPELMKVEGIGEKIAREIRR 738


>gi|32474581|ref|NP_867575.1| excinuclease ABC subunit C [Rhodopirellula baltica SH 1]
 gi|32445120|emb|CAD75122.1| probable excinuclease ABC chain C [Rhodopirellula baltica SH 1]
          Length = 347

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN--- 57
           +  + +P  PGVY   D  G  LY+G+A  L+ RI  ++  +++    + +     N   
Sbjct: 252 LDLDSLPNTPGVYLFRDSTG-YLYIGEAIRLRDRIGDHLRGSHNAGLASILGDDATNPVT 310

Query: 58  IRFTVTCTEVEALLL------EANMIKRLKPRFN 85
           +       +  A  L      E+ +I+   PRFN
Sbjct: 311 LELHAFPNDSPAKKLTVRRAYESELIRSRHPRFN 344


>gi|228476991|ref|ZP_04061629.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
 gi|228251010|gb|EEK10181.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
          Length = 652

 Score = 61.3 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 32/55 (58%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    + LL++FG++K ++ +  E +A+++G+ + IA  I  +F K  + 
Sbjct: 502 GIRHVGAKVSKQLLEAFGSIKELASADVEAIAAVDGLGEVIAKSIQRYFAKEEAQ 556


>gi|238063192|ref|ZP_04607901.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
 gi|237885003|gb|EEP73831.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
          Length = 702

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L + F ++  I  +S E L+S++G+   IA  I + F
Sbjct: 537 SIRHVGPTAAQALARHFRSMAAIQEASEEELSSVDGVGPTIAASIVDWF 585


>gi|124485977|ref|YP_001030593.1| Hef nuclease [Methanocorpusculum labreanum Z]
 gi|124363518|gb|ABN07326.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 763

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 545 HRKRRKKAAYSPLDEI----NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           H+ +  ++  + ++ I      IGP   R LL+ FG+++ I  +S E L  ++G+ +K A
Sbjct: 690 HKSKTGRSGKAAVEYILTAFPEIGPKAARDLLREFGSLRSILSASKEDLLRVKGVGEKTA 749

Query: 601 CKIYN 605
             +  
Sbjct: 750 NAVLQ 754


>gi|289596778|ref|YP_003483474.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289534565|gb|ADD08912.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 756

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            ++ +  +     + LL+ FG+VK +  +    L  ++GI +K A +IY+  +K
Sbjct: 694 IIESLPNVSAKLSQRLLEHFGSVKDVINAEVGELIQVKGIGRKTAEEIYDIVNK 747


>gi|304313782|ref|YP_003848929.1| helicase [Methanothermobacter marburgensis str. Marburg]
 gi|302587241|gb|ADL57616.1| predicted helicase [Methanothermobacter marburgensis str. Marburg]
          Length = 736

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + +  IG    R LL+SFG+V+ +  +S + L  +EGI K+IA +I  
Sbjct: 675 ESLPYIGSKYARRLLESFGSVEAVMNASEKELMEVEGIGKRIASEIRK 722


>gi|28572508|ref|NP_789288.1| DNA ligase [Tropheryma whipplei TW08/27]
 gi|81629879|sp|Q83HX4|DNLJ_TROW8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28410640|emb|CAD67026.1| DNA ligase [Tropheryma whipplei TW08/27]
          Length = 628

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           +A  SPL        I  IGP   + L   FG+++ I  +  + L  +  + + IA  ++
Sbjct: 545 RAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESIINAKIDELLKVRSLGETIAISVH 604

Query: 605 NHFH 608
           + F 
Sbjct: 605 DWFR 608


>gi|167570377|ref|ZP_02363251.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis C6786]
          Length = 691

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 19/93 (20%)

Query: 536 EAHRFAITTHRKRRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMI 581
           E  RFA     ++  +     LD+              I  +G    + L + FG++  I
Sbjct: 501 ELDRFA-----EKSAQNLIDSLDKAKHTTLSRFIYALGIRHVGESTAKDLAKHFGSLDPI 555

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             +S E L  +  +   +A  I+  F +  + T
Sbjct: 556 MDASIEALLEVNDVGPIVAESIHQFFAEEHNRT 588


>gi|167563194|ref|ZP_02356110.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis EO147]
          Length = 691

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 19/93 (20%)

Query: 536 EAHRFAITTHRKRRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMI 581
           E  RFA     ++  +     LD+              I  +G    + L + FG++  I
Sbjct: 501 ELDRFA-----EKSAQNLIDSLDKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPI 555

Query: 582 SRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             +S E L  +  +   +A  I+  F +  + T
Sbjct: 556 MDASIEALLEVNDVGPIVAESIHQFFAEEHNRT 588


>gi|168186072|ref|ZP_02620707.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
 gi|169295952|gb|EDS78085.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
          Length = 664

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G      L + F T+  +  +  E L S+E I   +A  + + F+ +T
Sbjct: 513 GIPNVGKKTSTDLCKKFKTLDNLKEAKIEELVSVEDIGDIVAQSVLDFFNDDT 565


>gi|166216282|sp|Q83G99|DNLJ_TROWT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 628

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           +A  SPL        I  IGP   + L   FG+++ I  +  + L  +  + + IA  ++
Sbjct: 545 RAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESIINAKIDELLKVRSLGETIAISVH 604

Query: 605 NHFH 608
           + F 
Sbjct: 605 DWFR 608


>gi|327541270|gb|EGF27813.1| excinuclease ABC subunit C [Rhodopirellula baltica WH47]
          Length = 347

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 1   MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN--- 57
           ++ + +P  PGVY   D  G  LY+G+A  L+ RI  ++  +++    + +     N   
Sbjct: 252 LNLDSLPNTPGVYLFRDSTG-YLYIGEAIRLRDRIGDHLRGSHNAGLASILGDDATNPVT 310

Query: 58  IRFTVTCTEVEALLL------EANMIKRLKPRFN 85
           +       +  A  L      E+ +I+   PRFN
Sbjct: 311 LELHAFPNDSPAKKLTVRRAYESELIRSRHPRFN 344


>gi|28493381|ref|NP_787542.1| DNA ligase [Tropheryma whipplei str. Twist]
 gi|28476422|gb|AAO44511.1| DNA ligase [Tropheryma whipplei str. Twist]
          Length = 634

 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           +A  SPL        I  IGP   + L   FG+++ I  +  + L  +  + + IA  ++
Sbjct: 551 RAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESIINAKIDELLKVRSLGETIAISVH 610

Query: 605 NHFH 608
           + F 
Sbjct: 611 DWFR 614


>gi|14520497|ref|NP_125972.1| Hef nuclease [Pyrococcus abyssi GE5]
 gi|5457712|emb|CAB49203.1| Putative ATP-dependent ERCC4-like helicase [Pyrococcus abyssi GE5]
          Length = 752

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + +  +     + LL+ FG+V+ +  +S   L  +EGI +KIA +I  
Sbjct: 696 ESLPHVSATLAKRLLKHFGSVERVFTASVPELMKVEGIGEKIAREIRR 743


>gi|16077730|ref|NP_388544.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221308499|ref|ZP_03590346.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312822|ref|ZP_03594627.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221317746|ref|ZP_03599040.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221322025|ref|ZP_03603319.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|7673987|sp|O31498|DNLJ_BACSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2632976|emb|CAB12482.1| DNA ligase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 668

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L+       I  IG    + L   F +++ + ++S E L +++ I +K+A  +
Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEELLAVDEIGEKMADAV 555

Query: 604 YNHFHK 609
             +FHK
Sbjct: 556 ITYFHK 561


>gi|321314391|ref|YP_004206678.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
 gi|320020665|gb|ADV95651.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
          Length = 668

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L+       I  IG    + L   F +++ + ++S E L +++ I +K+A  +
Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEELLAVDEIGEKMADAV 555

Query: 604 YNHFHK 609
             +FHK
Sbjct: 556 ITYFHK 561


>gi|288931017|ref|YP_003435077.1| helicase [Ferroglobus placidus DSM 10642]
 gi|288893265|gb|ADC64802.1| helicase domain protein [Ferroglobus placidus DSM 10642]
          Length = 761

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 545 HRKRRKKAAYSPLD----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           H  + K+     ++     I+ +GP+  + LL+ F T++ I+ +S E L  ++ + +K A
Sbjct: 668 HSGKSKRTLKDEMEYIVSAISNVGPVIAKNLLKEFQTIERIATASVEELMKVKNVGRKTA 727

Query: 601 CKIYN 605
            +I  
Sbjct: 728 ERIRK 732


>gi|291483102|dbj|BAI84177.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. natto
           BEST195]
          Length = 668

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L+       I  IG    + L   F +++ + ++S E L +++ I +K+A  +
Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEELLAVDEIGEKMADAV 555

Query: 604 YNHFHK 609
             +FHK
Sbjct: 556 ITYFHK 561


>gi|297559142|ref|YP_003678116.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843590|gb|ADH65610.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 775

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP     L + F ++  I  +S E LA+++G+   IA  I   F
Sbjct: 567 SIRHVGPRAAEDLARHFRSMDAIRAASEEELAAVDGVGPTIAASIREWF 615


>gi|225620892|ref|YP_002722150.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
 gi|254781267|sp|C0QVE5|DNLJ_BRAHW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225215712|gb|ACN84446.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
          Length = 663

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G     LL + F +++   +++ + L +IEGI +  A  IY+  H   +
Sbjct: 515 VGETTADLLAKYFTSIENFKKATIDDLQNIEGIGEISAKSIYDFLHNEKT 564


>gi|288927843|ref|ZP_06421690.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330677|gb|EFC69261.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 665

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    +LL + F ++  +  ++PE L  +EG+   IA  +   FH   +
Sbjct: 515 VGETTAKLLAKHFKSIDALMVATPEQLVEVEGVGTVIAESVVRFFHDEVN 564


>gi|220935604|ref|YP_002514503.1| ERCC4 domain-containing protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996914|gb|ACL73516.1| ERCC4 domain-containing protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 234

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 546 RKRRKKAAYS-PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           R + K+A  S  L  +  +G  R   LL  FG+V+ + R+    L  ++GI ++ A  I
Sbjct: 155 RPKGKRALQSHILQSLPRVGAERAARLLDRFGSVEAVIRAGDAELKEVDGIGQRTARCI 213


>gi|323165292|gb|EFZ51080.1| uvrABC system C domain protein [Shigella sonnei 53G]
 gi|323186312|gb|EFZ71662.1| uvrABC system protein C domain protein [Escherichia coli 1357]
 gi|323186792|gb|EFZ72112.1| uvrABC system protein C domain protein [Escherichia coli RN587/1]
 gi|332096733|gb|EGJ01724.1| uvrABC system protein C domain protein [Shigella boydii 3594-74]
          Length = 40

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           LL+  G ++ +  +S E +A + GIS+ +A KI+
Sbjct: 2   LLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIF 35


>gi|297278235|ref|XP_002801517.1| PREDICTED: Fanconi anemia-associated protein of 24 kDa-like,
           partial [Macaca mulatta]
          Length = 105

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +I G+G ++  LLLQ F +++ +S +S   L  + G  + +A +I+  F
Sbjct: 55  QIPGVGKVKAPLLLQKFPSIQQLSNASIRELEQVVG--QAVAKQIHAFF 101


>gi|327285448|ref|XP_003227445.1| PREDICTED: Fanconi anemia-associated protein of 24 kDa-like [Anolis
           carolinensis]
          Length = 211

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 547 KRRKKAAYSPL----DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           K+  K   S +     +I G+G  +  LLL+ F ++  +  +S   L  + G  + +A +
Sbjct: 147 KKSPKLLESSIIQTVQQIPGVGKAKALLLLERFRSLHQLCNASVPDLEEVVG--RSLAQQ 204

Query: 603 IYNHF 607
           I+  F
Sbjct: 205 IHAFF 209


>gi|257386865|ref|YP_003176638.1| Hef nuclease [Halomicrobium mukohataei DSM 12286]
 gi|257169172|gb|ACV46931.1| helicase domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 851

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 24/40 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           +GP+  R LL+ FG+V+ +  +  + L  ++G+ +  A +
Sbjct: 801 VGPVTARALLEHFGSVEAVMTADEDELMDVDGVGEVTAER 840


>gi|15679414|ref|NP_276531.1| Hef nuclease [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622527|gb|AAB85892.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 738

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            R+K  +  ++ +  IG      LL++FG+V+ +  +S + L S+EGI  K A +I  
Sbjct: 664 LREKQLF-IVESLPNIGSKYAERLLEAFGSVEGVMNASEKELRSVEGIGAKRASEIRR 720


>gi|206895761|ref|YP_002246502.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
           5265]
 gi|254781298|sp|B5Y6V5|DNLJ_COPPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206738378|gb|ACI17456.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
           5265]
          Length = 666

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    ++L + FG++  +  ++ + L SIEGI    A  I     
Sbjct: 513 GIPRVGLKTAQMLAEHFGSINALLNATMDELTSIEGIGTDTAETILKALQ 562


>gi|254173751|ref|ZP_04880423.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
           AM4]
 gi|214032443|gb|EEB73273.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
           AM4]
          Length = 807

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 29/109 (26%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           +AK  +     E     + +AL L  R       QRL                       
Sbjct: 717 LAKREQEERKKEVRLRGEKKALTLAER-------QRL----------------------I 747

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++ +  +     + LL+ FG V+ +  ++ E L  +EGI  K A +I  
Sbjct: 748 VEGLPNVSSTLAKRLLKHFGNVERVFTATEEELKEVEGIGPKKAREIRK 796


>gi|188587790|ref|YP_001919828.1| NAD-dependent DNA ligase LigA [Clostridium botulinum E3 str. Alaska
           E43]
 gi|254781291|sp|B2UZ23|DNLJ_CLOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188498071|gb|ACD51207.1| DNA ligase, NAD-dependent [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 667

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + ++  F ++  +  ++ E L S++ +   +A  I   F + 
Sbjct: 513 GIPNVGVKTAKDIVNKFKSIDGLKNATFEELVSVQDVGDIVAQDIIEFFKEE 564


>gi|118431455|ref|NP_147940.2| repair endonuclease XPF [Aeropyrum pernix K1]
 gi|116062779|dbj|BAA80433.2| repair endonuclease XPF [Aeropyrum pernix K1]
          Length = 248

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L    GIG      +L+ FG+++    +S   ++ +EGI +K A +I    
Sbjct: 167 ILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 218


>gi|300709530|ref|YP_003735344.1| Hef nuclease [Halalkalicoccus jeotgali B3]
 gi|299123213|gb|ADJ13552.1| Hef nuclease [Halalkalicoccus jeotgali B3]
          Length = 799

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 545 HRKRRKKAAYSPLDEING----IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           H K+  K      + + G    IGP+  R LL++FG+V+ +  +S E L   EG+ +  A
Sbjct: 724 HGKKSSKTLAEQQEYVVGSIADIGPVTARSLLEAFGSVEAVLTASEEELMDAEGVGEVTA 783

Query: 601 CKIYN 605
            +I  
Sbjct: 784 GRIRE 788


>gi|221632243|ref|YP_002521464.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
 gi|254781441|sp|B9KXM2|DNLJ_THERP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221155911|gb|ACM05038.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
          Length = 695

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    +LL   F ++  +  ++ + L  I G    +A  ++  F +
Sbjct: 529 GIRHVGERNAQLLADHFRSIDRLMEATIDELLQIPGFGPAVAQSVFEFFRE 579


>gi|160899029|ref|YP_001564611.1| NAD-dependent DNA ligase [Delftia acidovorans SPH-1]
 gi|254781308|sp|A9BZW4|DNLJ_DELAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160364613|gb|ABX36226.1| DNA ligase, NAD-dependent [Delftia acidovorans SPH-1]
          Length = 703

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + KK   S       I  +G    + L + FG +  I  +S E L  +  +   +A  I+
Sbjct: 533 KSKKTTLSRFLFGLGIRQVGESTAKDLARHFGQLDAIMDASVEQLLQVRDVGPIVAESIH 592

Query: 605 NHF 607
             F
Sbjct: 593 TFF 595


>gi|15835041|ref|NP_296800.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg]
 gi|270285206|ref|ZP_06194600.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg]
 gi|270289225|ref|ZP_06195527.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Weiss]
 gi|301336602|ref|ZP_07224804.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum MopnTet14]
 gi|13626415|sp|Q9PKP2|DNLJ_CHLMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|7190466|gb|AAF39279.1| DNA ligase [Chlamydia muridarum Nigg]
          Length = 660

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G      L   FGT+  + ++S + L SIEGI +K+A  I + F K  +
Sbjct: 508 SIPFVGSSGAIALADHFGTLDKVMKASLDELLSIEGIGQKVAASIIDFFSKTEN 561


>gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
 gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
          Length = 669

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    ++L + FG++  +  ++ E L  I  I  KIA  I ++F +  + T
Sbjct: 515 GIRHVGERAAKILARHFGSMSALMAATVEDLTVIPEIGPKIAESIVDYFARPENKT 570


>gi|182419331|ref|ZP_02950583.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
 gi|237666454|ref|ZP_04526439.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376662|gb|EDT74234.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
 gi|237657653|gb|EEP55208.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 663

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 24/52 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L+  F +++ +  ++ E L S+  +   +A  + + F + 
Sbjct: 511 GIPNVGVKTAKDLVSRFKSIEGLKNATFEELVSVPDVGDIVAQDVMSFFKEE 562


>gi|157363572|ref|YP_001470339.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
 gi|190359296|sp|A8F541|DNLJ_THELT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157314176|gb|ABV33275.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
          Length = 678

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R+L Q F ++K +  SS + L  IEGI  +IA  I  +F    +
Sbjct: 515 GIPLVGEKTARILTQKFRSIKRLLSSSVDELTQIEGIGIEIAKNIREYFDNEKT 568


>gi|61680877|pdb|2BGW|A Chain A, Xpf From Aeropyrum Pernix, Complex With Dna
 gi|61680878|pdb|2BGW|B Chain B, Xpf From Aeropyrum Pernix, Complex With Dna
          Length = 219

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L    GIG      +L+ FG+++    +S   ++ +EGI +K A +I    
Sbjct: 163 ILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 214


>gi|332879161|ref|ZP_08446862.1| DNA protecting protein DprA [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682961|gb|EGJ55857.1| DNA protecting protein DprA [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 365

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN---HFHKNTS 612
            L +I  +G +  R LL  FG+ + I   S E L  + GI  KIA  + +   + H+  +
Sbjct: 10  ALKKIPLVGDITARKLLTHFGSAQRIFAQSREKLEKLIGIGSKIADNVLHSATYLHEAEA 69

Query: 613 H 613
            
Sbjct: 70  E 70


>gi|332854677|ref|XP_512569.3| PREDICTED: Fanconi anemia-associated protein of 24 kDa-like isoform
           2 [Pan troglodytes]
          Length = 215

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +I G+G ++  LLLQ F +++ +S +S   L  + G  + +A +I+  F
Sbjct: 165 QIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVG--QAVAQQIHAFF 211


>gi|297704351|ref|XP_002829069.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia-associated protein
           of 24 kDa-like [Pongo abelii]
          Length = 215

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +I G+G ++  LLLQ F +++ +S +S   L  + G  + +A +I+  F
Sbjct: 165 QIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVG--QAVAQQIHAFF 211


>gi|114676520|ref|XP_001152811.1| PREDICTED: similar to Chromosome 19 open reading frame 40 isoform 1
           [Pan troglodytes]
          Length = 172

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +I G+G ++  LLLQ F +++ +S +S   L  + G  + +A +I+  F
Sbjct: 122 QIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVG--QAVAQQIHAFF 168


>gi|22748623|ref|NP_689479.1| Fanconi anemia-associated protein of 24 kDa [Homo sapiens]
 gi|74733136|sp|Q9BTP7|FAP24_HUMAN RecName: Full=Fanconi anemia-associated protein of 24 kDa
 gi|18044260|gb|AAH20247.1| Chromosome 19 open reading frame 40 [Homo sapiens]
 gi|33874873|gb|AAH10170.2| Chromosome 19 open reading frame 40 [Homo sapiens]
 gi|37514846|gb|AAH03535.2| Chromosome 19 open reading frame 40 [Homo sapiens]
 gi|193785921|dbj|BAG54708.1| unnamed protein product [Homo sapiens]
 gi|312151278|gb|ADQ32151.1| chromosome 19 open reading frame 40 [synthetic construct]
          Length = 215

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +I G+G ++  LLLQ F +++ +S +S   L  + G  + +A +I+  F
Sbjct: 165 QIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVG--QAVAQQIHAFF 211


>gi|251777669|ref|ZP_04820589.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243081984|gb|EES47874.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 667

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + ++  F ++  +  ++ E L S++ +   +A  I   F + 
Sbjct: 513 GIPNVGVKTAKDIVNKFKSIDGLKNATFEELVSVQDVGDIVAKDIIEFFKEE 564


>gi|126172618|ref|YP_001048767.1| ERCC4 domain-containing protein [Shewanella baltica OS155]
 gi|125995823|gb|ABN59898.1| ERCC4 domain protein [Shewanella baltica OS155]
          Length = 212

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KR K      L  +  +GP     LL  F +V+ +  +S E L  + GI K  A KI   
Sbjct: 150 KRTKNQQLFILQSLPEVGPKLANKLLCHFASVEAVVTASEEALMQVGGIGKNKASKIREV 209

Query: 607 F 607
            
Sbjct: 210 L 210


>gi|222054654|ref|YP_002537016.1| DNA protecting protein DprA [Geobacter sp. FRC-32]
 gi|221563943|gb|ACM19915.1| DNA protecting protein DprA [Geobacter sp. FRC-32]
          Length = 359

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L  + G+G +  R LL++F T + + ++S   LA ++GIS  +A  I  H
Sbjct: 8   ALKSVPGVGNVTFRKLLEAFETPERVLKASVNELARVKGISPNLAASIVTH 58


>gi|15895931|ref|NP_349280.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824]
 gi|81529669|sp|Q97FQ5|DNLJ2_CLOAB RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|15025704|gb|AAK80620.1|AE007765_2 NAD-dependent DNA ligase [Clostridium acetobutylicum ATCC 824]
          Length = 669

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G      L + F + + I ++S + L  ++ I   +A  I   F + 
Sbjct: 516 GIPNVGKKTATDLCKQFKSFENIKKASYDELILVQDIGSIVAESIVEFFKQE 567


>gi|325510083|gb|ADZ21719.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018]
          Length = 669

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G      L + F + + I ++S + L  ++ I   +A  I   F + 
Sbjct: 516 GIPNVGKKTATDLCKQFKSFENIKKASYDELILVQDIGSIVAESIVEFFKQE 567


>gi|313673736|ref|YP_004051847.1| DNA ligase, nad-dependent [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940492|gb|ADR19684.1| DNA ligase, NAD-dependent [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 655

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I+G+G    + L   F ++  I  +S + L  I GI  ++   I+  F +
Sbjct: 503 GIDGVGIKMAQTLALHFKSIDSIMAASIDDLMDIYGIGDEVGRSIFEFFRE 553


>gi|218883987|ref|YP_002428369.1| ERCC4 domain protein [Desulfurococcus kamchatkensis 1221n]
 gi|218765603|gb|ACL11002.1| ERCC4 domain protein [Desulfurococcus kamchatkensis 1221n]
          Length = 238

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           IGP+  R LL  F T+K ++ +S   L S+EGI +K A +IY  F+
Sbjct: 182 IGPVLARKLLARFKTLKNLANASKHELLSVEGIGEKRAEEIYLLFN 227


>gi|296135970|ref|YP_003643212.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
 gi|295796092|gb|ADG30882.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
          Length = 688

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    + L + FG +  I  +S E L  +  +   +A  I   F
Sbjct: 532 GIRHVGEATAKDLARHFGGLDAILDASLEQLLEVPDVGPVVAQSIRTFF 580


>gi|50753790|ref|XP_414132.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 215

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +I G+G  +  LLLQ FG++  I  +S + L  + G  + +A +I+   
Sbjct: 167 QIPGVGKTKALLLLQQFGSIHQICNASVKELELVVG--QTVAQQIHTFL 213


>gi|170733380|ref|YP_001765327.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
 gi|254781274|sp|B1JUF5|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
          Length = 691

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  ++
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
 gi|166215562|sp|A0K8E8|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215593|sp|Q1BHI7|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
          Length = 691

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  ++
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|78066803|ref|YP_369572.1| DNA ligase (NAD+) [Burkholderia sp. 383]
 gi|123742568|sp|Q39F38|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383]
          Length = 691

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  ++
Sbjct: 519 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLH 578

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 579 QFFAEEHNRT 588


>gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
 gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
          Length = 746

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG++  I  +S E L  +  +   +A  ++
Sbjct: 574 KAKHTTLARFIYGLGIRHVGESTAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESLH 633

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 634 QFFAEEHNRT 643


>gi|61680885|pdb|2BHN|A Chain A, Xpf From Aeropyrum Pernix
 gi|61680886|pdb|2BHN|B Chain B, Xpf From Aeropyrum Pernix
 gi|61680887|pdb|2BHN|C Chain C, Xpf From Aeropyrum Pernix
 gi|61680888|pdb|2BHN|D Chain D, Xpf From Aeropyrum Pernix
          Length = 214

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L    GIG      +L+ FG+++    +S   ++ +EGI +K A +I    
Sbjct: 156 ILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 207


>gi|325335472|gb|ADZ11746.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Riemerella
           anatipestifer RA-GD]
          Length = 669

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + L+++F T+  + +++ E L  +E +  KIA  + N+F    +
Sbjct: 514 GIKHVGETVAKKLVKNFHTIDGLKKATLEELTEVEDVGIKIAESLVNYFQNEEN 567


>gi|126465094|ref|YP_001040203.1| ERCC4 domain-containing protein [Staphylothermus marinus F1]
 gi|126013917|gb|ABN69295.1| ERCC4 domain protein [Staphylothermus marinus F1]
          Length = 235

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +GP   R LL+ F T++ I+ +S + L  +EGI  K A +IY  F+
Sbjct: 182 VGPTLARKLLREFKTLRNIANASIKELMVVEGIGVKRANEIYLIFN 227


>gi|77024937|gb|ABA61364.1| ATP-dependent RNA helicase [uncultured marine group II
           euryarchaeote HF70_59C08]
          Length = 878

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%)

Query: 546 RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           RK+      S L+++ G+GP     +L+ + T+  +S++  + +  I+G+S ++A +I  
Sbjct: 813 RKQSHGITRSMLEQVPGVGPALASRILERWPTIAELSKARDDEIVEIKGLSVQLAQQIVR 872

Query: 606 HFH 608
             H
Sbjct: 873 ILH 875


>gi|147898967|ref|NP_001082992.1| Fanconi anemia-associated protein of 24 kDa [Danio rerio]
 gi|126631525|gb|AAI33927.1| Zgc:162267 protein [Danio rerio]
          Length = 215

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 11/69 (15%)

Query: 550 KKAAYSPLDE---------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           ++   S L +         I G+G ++ +LLLQ+F ++  +SR+S + L  + G     A
Sbjct: 146 RRRTVSRLLDPLVLSLVQQIPGVGKVKAQLLLQTFPSILQLSRASVQELEPVVG--PATA 203

Query: 601 CKIYNHFHK 609
             I   FH 
Sbjct: 204 QHIRGFFHN 212


>gi|313207091|ref|YP_004046268.1| DNA ligase, naD-dependent [Riemerella anatipestifer DSM 15868]
 gi|312446407|gb|ADQ82762.1| DNA ligase, NAD-dependent [Riemerella anatipestifer DSM 15868]
 gi|315022511|gb|EFT35538.1| DNA ligase [Riemerella anatipestifer RA-YM]
          Length = 669

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + L+++F T+  + +++ E L  +E +  KIA  + N+F    +
Sbjct: 514 GIKHVGETVAKKLVKNFHTIDGLKKATLEELTEVEDVGIKIAESLVNYFQNEEN 567


>gi|292657118|ref|YP_003537015.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
 gi|291371263|gb|ADE03490.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
          Length = 858

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           I  IGP+  R LL++FG+V+ +  ++ E L  + G+ +  A +I  
Sbjct: 806 IADIGPVTARTLLEAFGSVEAVMTANEEDLKEVRGVGQVTAERIRE 851


>gi|73668740|ref|YP_304755.1| Hef nuclease [Methanosarcina barkeri str. Fusaro]
 gi|72395902|gb|AAZ70175.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina barkeri
           str. Fusaro]
          Length = 938

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           I  IGP   R LL  FG+V+ I ++  + L  +  I  K A KI  
Sbjct: 885 IADIGPKAARNLLLHFGSVEAIMKADAKELKKVNLIGPKRATKIRE 930


>gi|320100599|ref|YP_004176191.1| ERCC4 domain-containing protein [Desulfurococcus mucosus DSM 2162]
 gi|319752951|gb|ADV64709.1| ERCC4 domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 241

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           IGP+  R LL+ F T++ ++ +S   L S+EGI +K A +IY  F+
Sbjct: 182 IGPVLARKLLERFKTLRNLANASKHDLLSVEGIGEKRAEEIYLLFN 227


>gi|118444950|ref|YP_878905.1| NAD-dependent DNA ligase LigA [Clostridium novyi NT]
 gi|166215579|sp|A0Q2Q3|DNLJ_CLONN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118135406|gb|ABK62450.1| DNA ligase, NAD-dependent [Clostridium novyi NT]
          Length = 664

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G      L + F T+  + ++  E L S+E I   +A  + + F+  T
Sbjct: 513 GIPNVGKKTSTDLCKKFKTLDNLKKAKFEELVSVEDIGDIVAQSVLDFFNDET 565


>gi|213580982|ref|ZP_03362808.1| nucleotide excision repair endonuclease [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-0664]
          Length = 80

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 5  QMPECPGVYQMLDIAGR-VLYVGKAYNLQKRIKSYMHSNN 43
          + P  PGVY     +    LY+GK+ N++ R+ S++ + +
Sbjct: 39 EAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPD 78


>gi|57640956|ref|YP_183434.1| Hef nuclease [Thermococcus kodakarensis KOD1]
 gi|57159280|dbj|BAD85210.1| helicase-associated endonuclease for fork-structured DNA
           [Thermococcus kodakarensis KOD1]
          Length = 804

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 29/109 (26%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           +AK  +     E     + +AL L  R       QRL                       
Sbjct: 718 MAKREQEERKKEVRLRSEKKALTLAER-------QRL----------------------I 748

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++ +  +     + LL+ FG V+ +  ++ E L  +EGI  K A +I  
Sbjct: 749 VEGLPNVSATLAKRLLKHFGNVERVFTATEEELKEVEGIGPKKAREIRR 797


>gi|168183572|ref|ZP_02618236.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
 gi|237796711|ref|YP_002864263.1| NAD-dependent DNA ligase LigA [Clostridium botulinum Ba4 str. 657]
 gi|254781290|sp|C3KUA1|DNLJ_CLOB6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|182673387|gb|EDT85348.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
 gi|229263356|gb|ACQ54389.1| DNA ligase, NAD-dependent [Clostridium botulinum Ba4 str. 657]
          Length = 664

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      L+  F T++ I  ++ E L  +  + + +A  IY+ F
Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561


>gi|300870442|ref|YP_003785313.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
 gi|300688141|gb|ADK30812.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
          Length = 663

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G     LL + F +V+   +++ + L +IEGI +  A  IY+  H   +
Sbjct: 515 VGETTADLLAKYFTSVENFKKATIDDLQNIEGIGEISAKSIYDFLHNKKT 564


>gi|294054681|ref|YP_003548339.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
 gi|293614014|gb|ADE54169.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
          Length = 711

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + L   F ++  ++R+S E L +I+GI   +A  I+  F  + +
Sbjct: 560 GIPHVGKQSAKDLEAHFESLDALARASEEQLEAIDGIGSIMAQSIHAWFEDSEN 613


>gi|226950696|ref|YP_002805787.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
 gi|254781293|sp|C1FLS8|DNLJ_CLOBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226842063|gb|ACO84729.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
          Length = 664

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      L+  F T++ I  ++ E L  +  + + +A  IY+ F
Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561


>gi|153940260|ref|YP_001392616.1| NAD-dependent DNA ligase LigA [Clostridium botulinum F str.
           Langeland]
 gi|166215578|sp|A7GIK6|DNLJ_CLOBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152936156|gb|ABS41654.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. Langeland]
 gi|295320603|gb|ADG00981.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. 230613]
          Length = 664

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      L+  F T++ I  ++ E L  +  + + +A  IY+ F
Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561


>gi|258510685|ref|YP_003184119.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477411|gb|ACV57730.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 684

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 552 AAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  + L+       I  +G    + L + F T+  +  +S E L ++  I  K+A  I  
Sbjct: 507 SKRNSLERLLFGLGIRHVGEKAAKTLAEHFVTIDALMSASEEDLMAVPDIGPKVAQSIRQ 566

Query: 606 HF 607
           +F
Sbjct: 567 YF 568


>gi|322807581|emb|CBZ05156.1| DNA ligase [Clostridium botulinum H04402 065]
          Length = 664

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      L+  F T++ I  ++ E L  +  + + +A  IY+ F
Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561


>gi|170756080|ref|YP_001782894.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B1 str. Okra]
 gi|254781294|sp|B1ING1|DNLJ_CLOBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169121292|gb|ACA45128.1| DNA ligase, NAD-dependent [Clostridium botulinum B1 str. Okra]
          Length = 664

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      L+  F T++ I  ++ E L  +  + + +A  IY+ F
Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561


>gi|168179082|ref|ZP_02613746.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
 gi|182670115|gb|EDT82091.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
          Length = 664

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      L+  F T++ I  ++ E L  +  + + +A  IY+ F
Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561


>gi|121611375|ref|YP_999182.1| DNA ligase [Verminephrobacter eiseniae EF01-2]
 gi|166216275|sp|A1WRA7|DNLJ_VEREI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121556015|gb|ABM60164.1| DNA ligase, NAD-dependent [Verminephrobacter eiseniae EF01-2]
          Length = 693

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L + FGT+  I  +S E L  +  I   +A  ++  F +
Sbjct: 543 VGEATAKDLARHFGTLDAIMNASVEQLLQVSDIGPVVAQSLHCFFQQ 589


>gi|328953957|ref|YP_004371291.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109]
 gi|328454281|gb|AEB10110.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109]
          Length = 442

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIY 604
            L +I G+G +    L ++ F + K ++ ++   L  + GI++K A +I 
Sbjct: 354 SLLKIPGVGEMTASALYEAGFTSAKEVAEANLAELMQVPGINEKKATQIL 403


>gi|317056400|ref|YP_004104867.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
 gi|315448669|gb|ADU22233.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
          Length = 659

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+    LD       I  IG    +LL   FG +  I  ++ E ++ I+G    +A  +Y
Sbjct: 495 KSRSVSLDRLIFGLGIRNIGQASAKLLCAKFGGLDSIMSATAEEISGIDGFGVVMAQSVY 554

Query: 605 NHFHKN 610
           N FH+ 
Sbjct: 555 NAFHEE 560


>gi|148381215|ref|YP_001255756.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 3502]
 gi|153931904|ref|YP_001385590.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. ATCC
           19397]
 gi|153935840|ref|YP_001388996.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. Hall]
 gi|166215576|sp|A7FYL7|DNLJ_CLOB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215577|sp|A5I6Z7|DNLJ_CLOBH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148290699|emb|CAL84829.1| DNA ligase [Clostridium botulinum A str. ATCC 3502]
 gi|152927948|gb|ABS33448.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 19397]
 gi|152931754|gb|ABS37253.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. Hall]
          Length = 664

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      L+  F T++ I  ++ E L  +  + + +A  IY+ F
Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561


>gi|320166062|gb|EFW42961.1| excision repair enzyme ERCC-1 [Capsaspora owczarzaki ATCC 30864]
          Length = 509

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LL +FG++K I+ ++PE L+   GI +    +IY  FH+
Sbjct: 319 ILTSIKSVNKTDVITLLSTFGSLKNIANATPEQLSRCPGIGEHKVRRIYEAFHQ 372


>gi|253996456|ref|YP_003048520.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
 gi|253983135|gb|ACT47993.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
          Length = 677

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G    + L + FG +  +  +S E L  +  +   +A  I N F +  + +
Sbjct: 524 VGEATAKDLAKHFGNLNALMAASIEDLLEVNDVGPIVAESIKNFFSEEHNKS 575



 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 13/78 (16%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGIS 596
           AIT +  RR         +I G+G      L    L    T+  +      TL+++E ++
Sbjct: 443 AITHYASRRA-------MDIEGLGEKLVDQLVEANLVH--TLADVYSLDIHTLSNLERMA 493

Query: 597 KKIACKIYNHFHKNTSHT 614
           +K A  I +  + +   T
Sbjct: 494 EKSAQNILDALNASKDTT 511


>gi|302348720|ref|YP_003816358.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15]
 gi|302329132|gb|ADL19327.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15]
          Length = 724

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTSH 613
            L EI G+G +R R L  + F T++ ++ +SP+ L  I GI       I   F  K  + 
Sbjct: 648 QLVEIPGVGRVRARRLYNAGFKTLESLATASPQELLRIPGIGPATVASILEFFGRKEEAA 707

Query: 614 T 614
           +
Sbjct: 708 S 708


>gi|312863154|ref|ZP_07723392.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
 gi|322516268|ref|ZP_08069198.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
           49124]
 gi|311100690|gb|EFQ58895.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
 gi|322125241|gb|EFX96614.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
           49124]
          Length = 652

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    + LL++FG+++ ++ +  E +A+++G+   IA  I  +F K  + 
Sbjct: 502 GIRHVGAKVSKQLLEAFGSIQELASADVEAIAAVDGLGDVIAKSIQRYFAKEEAQ 556


>gi|326927343|ref|XP_003209852.1| PREDICTED: Fanconi anemia-associated protein of 24 kDa-like
           [Meleagris gallopavo]
          Length = 215

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +I G+G  +  LLLQ FG++  I  +S + L  I G    +A +I+   
Sbjct: 167 QIPGVGKTKALLLLQQFGSIHQICNASVKELELIVG--PTVAQQIHTFL 213


>gi|255526475|ref|ZP_05393386.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|296184848|ref|ZP_06853259.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|255509857|gb|EET86186.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
 gi|296050630|gb|EFG90053.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
          Length = 669

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG      L+++F ++  I +SS E L SI+ + + +A  I   F+++
Sbjct: 516 GIPNIGKKTATDLVKNFKSLDNIIQSSEEELVSIQDVGEIVAKSIIEFFNED 567


>gi|170761523|ref|YP_001788587.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A3 str. Loch
           Maree]
 gi|254781295|sp|B1L1H3|DNLJ_CLOBM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169408512|gb|ACA56923.1| DNA ligase, NAD-dependent [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 664

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      L+  F T++ I  ++ E L  +  + + +A  IY+ F
Sbjct: 513 GIPNVGKKTANDLVMKFKTLESIKNTTIEQLVEVPDVGEIVAKSIYDFF 561


>gi|62185205|ref|YP_219990.1| NAD-dependent DNA ligase LigA [Chlamydophila abortus S26/3]
 gi|81312632|sp|Q5L5Q2|DNLJ_CHLAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|62148272|emb|CAH64037.1| putative DNA ligase [Chlamydophila abortus S26/3]
          Length = 660

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 551 KAAYSPLD------EIN--GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           KA   PLD       I   GIG      L Q F +++ +  +S + L +IEGI  K+A  
Sbjct: 497 KAKSVPLDRFITALGIPYVGIGGA--NALAQHFLSLESVMAASLDDLKAIEGIGDKVAES 554

Query: 603 IYNHFHK 609
           I  +FH+
Sbjct: 555 IVAYFHQ 561


>gi|296126514|ref|YP_003633766.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
 gi|296018330|gb|ADG71567.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
          Length = 663

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G     LL + F +++   +++ E L +IEGI +  A  IY+  H  
Sbjct: 515 VGETTADLLAKYFTSIENFKKAAIEDLQNIEGIGEISAKSIYDFLHNE 562


>gi|254994841|ref|ZP_05277031.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str.
           Mississippi]
          Length = 44

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 24/43 (55%)

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +  FG++  + R+  + ++ + GIS K+A +IY +  +  +  
Sbjct: 2   ITYFGSIDGVKRARTDEISKVPGISIKLAQRIYAYLKQGMAQP 44


>gi|70606419|ref|YP_255289.1| XPF/RAD1 repair endonuclease [Sulfolobus acidocaldarius DSM 639]
 gi|68567067|gb|AAY79996.1| XPF/RAD1 repair endonuclease [Sulfolobus acidocaldarius DSM 639]
          Length = 236

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + +  +G    + LL+ F T++ I ++S   L    G S+K A +IY   H
Sbjct: 160 ESLPNVGEKLAKKLLEKFNTIENICKASISDLEKALG-SRKRAEEIYKVLH 209


>gi|83590843|ref|YP_430852.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
 gi|123739230|sp|Q2RGY0|DNLJ_MOOTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83573757|gb|ABC20309.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
          Length = 666

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R+L   FG++  ++ ++ E L ++  I  +IA  I   F
Sbjct: 514 GIRNVGQRAARVLADHFGSLDKLAAATVEELTALPDIGPRIAENIREFF 562


>gi|3258335|dbj|BAA31018.1| 90aa long hypothetical DNA excision repair protein [Pyrococcus
           horikoshii OT3]
          Length = 90

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 29/109 (26%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           +AK  +     E     + +AL L  R       QR+                       
Sbjct: 1   MAKREQEERKREVRIRGEKKALTLAER-------QRM----------------------I 31

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++ +  +     R LL+ FG+V+ +  +S   L  +EGI +KIA +I  
Sbjct: 32  VESLPNVSTTLARRLLRHFGSVEKVFTASVPELMKVEGIGEKIAREIRR 80


>gi|331270357|ref|YP_004396849.1| DNA ligase [Clostridium botulinum BKT015925]
 gi|329126907|gb|AEB76852.1| DNA ligase, NAD-dependent [Clostridium botulinum BKT015925]
          Length = 663

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G      L + F T+K +  ++ + L S+E I   +A  I   F  +T
Sbjct: 513 GIPNVGKKTSTDLCKKFKTLKNLKSATFDDLISVEDIGDIVAESIMEFFKDDT 565


>gi|148652285|ref|YP_001279378.1| DNA ligase [Psychrobacter sp. PRwf-1]
 gi|190359276|sp|A5WCN7|DNLJ_PSYWF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148571369|gb|ABQ93428.1| DNA ligase, NAD-dependent [Psychrobacter sp. PRwf-1]
          Length = 686

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I G+G    + L Q FG +  +  +S + L ++  +    A  IYN F   
Sbjct: 530 GIRGVGETTAQNLAQYFGDLPELMGASIDALEAVPDVGHITAELIYNFFRAE 581


>gi|212224218|ref|YP_002307454.1| Hef nuclease [Thermococcus onnurineus NA1]
 gi|212009175|gb|ACJ16557.1| helicase-associated endonuclease for fork-structured DNA
           [Thermococcus onnurineus NA1]
          Length = 789

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 29/109 (26%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           +AK  +     E     + +AL L  R       QRL                       
Sbjct: 700 MAKREQEERKKEVRLRSEKKALTLAER-------QRL----------------------I 730

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++ +  +     + LL+ FG V+ +  ++ E L  +EGI  K A +I  
Sbjct: 731 VEGLPNVSATLAKRLLKHFGNVERVFTATEEELQEVEGIGPKKAREIRK 779


>gi|220931596|ref|YP_002508504.1| DNA protecting protein DprA [Halothermothrix orenii H 168]
 gi|219992906|gb|ACL69509.1| DNA protecting protein DprA [Halothermothrix orenii H 168]
          Length = 409

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L  ING+G LR + LL  FG+   I ++S + L  + GI+ K+A KI
Sbjct: 39  ALTMINGLGILRIQNLLNYFGSASSIWQASEKELKQVNGIN-KLAEKI 85


>gi|299139723|ref|ZP_07032896.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
 gi|298598347|gb|EFI54512.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
          Length = 723

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G     LL + FG++  + ++S E L ++  +  ++A  I   F +  +
Sbjct: 576 VGERTASLLAEHFGSLDDLMKASAEDLEAVNEVGPRVAQAIVEFFAEEKN 625


>gi|326317205|ref|YP_004234877.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374041|gb|ADX46310.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 732

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+ ++ L        I  +G    + L + FG +  I  +S E L  +  +   +A  I+
Sbjct: 564 KSKHTTLPRFLFGLGIRHVGEATAKDLARHFGGLDAIIGASVEQLLEVNDVGPIVAEAIH 623

Query: 605 NHF 607
             F
Sbjct: 624 TFF 626


>gi|229493359|ref|ZP_04387148.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
 gi|229319675|gb|EEN85507.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
          Length = 700

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+++ I  +S + LA+++G+   IA  +   F
Sbjct: 534 SIRHVGPTAARALAGEFGSLQRIREASVDELAAVDGVGSTIAAAVVEWF 582


>gi|226305867|ref|YP_002765827.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
 gi|254781402|sp|C0ZXK3|DNLJ_RHOE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226184984|dbj|BAH33088.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
          Length = 700

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+++ I  +S + LA+++G+   IA  +   F
Sbjct: 534 SIRHVGPTAARALAGEFGSLQRIREASVDELAAVDGVGSTIAAAVVEWF 582


>gi|294495366|ref|YP_003541859.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666365|gb|ADE36214.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
          Length = 754

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           I  +GP   R LL+ FG+V+ + ++  E L  ++ I  K A +I  
Sbjct: 701 IPQLGPQAARNLLEHFGSVEAVMKACEEELREVKLIGPKTAARIRE 746


>gi|257066474|ref|YP_003152730.1| NAD-dependent DNA ligase LigA [Anaerococcus prevotii DSM 20548]
 gi|256798354|gb|ACV29009.1| DNA ligase, NAD-dependent [Anaerococcus prevotii DSM 20548]
          Length = 666

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    R L   F +   +  +S E L+ I+ I +  A  I  +F 
Sbjct: 510 GIPNVGERTSRDLANKFKSFDALRHASLEELSDIDDIGEITAQNIIEYFR 559


>gi|227485017|ref|ZP_03915333.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
 gi|227237014|gb|EEI87029.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
          Length = 667

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 17/83 (20%)

Query: 539 RFAITTHRKRRKKAAYSP-------LD------EINGIGPLRKRLLLQSFGTVKMISRSS 585
           RF    H K+ K    S        LD       I  +G    R L   F +   +  ++
Sbjct: 481 RF---GH-KKAKNLLASIDNSKNRDLDAFIYAIGIPNVGERTARDLANKFKSFDKLRNAT 536

Query: 586 PETLASIEGISKKIACKIYNHFH 608
            + L  I+ I +     I   FH
Sbjct: 537 VDELIEIDDIGEITGENIVEFFH 559


>gi|240103224|ref|YP_002959533.1| Hef nuclease [Thermococcus gammatolerans EJ3]
 gi|239910778|gb|ACS33669.1| Hef, Helicase-associated endonuclease for fork-structured DNA (Hef)
           [Thermococcus gammatolerans EJ3]
          Length = 801

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 29/109 (26%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           +AK  +     E     + +AL L  R       QRL                       
Sbjct: 711 LAKREQEERKKEVRLRSEKKALTLAER-------QRL----------------------I 741

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++ +  +     + LL+ FG V+ +  ++ E L  +EGI +K A +I  
Sbjct: 742 VEGLPNVSSTLAKRLLRHFGNVEKVFTATEEELKEVEGIGEKKAREIRK 790


>gi|291390089|ref|XP_002711556.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus]
          Length = 215

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 544 THRKRRKKAAYSPLD----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
             RK+R + +   L     +I G+G ++  LLLQ F T++ +S +S   L  + G  + +
Sbjct: 146 FLRKKRTQLSEPHLLRTVQQIPGVGKVKAPLLLQKFPTLQQLSNASIPELEPVVG--QAV 203

Query: 600 ACKIYNHF 607
           A +I+  F
Sbjct: 204 AQQIHAFF 211


>gi|330752433|emb|CBL87383.1| DNA ligase [uncultured Flavobacteria bacterium]
          Length = 663

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    ++L + + TV  +S +S E L +++ I  KIA  +Y  F  + S
Sbjct: 514 VGETVAKILAKHYKTVHALSEASVEDLEAVDEIGIKIAKSVYAFFRNDVS 563


>gi|313201136|ref|YP_004039794.1| DNA ligase, nad-dependent [Methylovorus sp. MP688]
 gi|312440452|gb|ADQ84558.1| DNA ligase, NAD-dependent [Methylovorus sp. MP688]
          Length = 689

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 21/51 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L + FG+++ +  +  E L  +  +   +A  I     +
Sbjct: 529 GIRNVGEATAKDLARYFGSLQALLAADIEQLQQVPDVGPIVAESIRQFLSE 579



 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQ--SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +I G+G      L+      T+  I R    TL+S++ +++K A  I +    + + T
Sbjct: 463 DIEGLGEKLVDQLVDGAHIHTLADIYRLDLATLSSLDRMAEKSAQNILDALQASKATT 520


>gi|253999028|ref|YP_003051091.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
 gi|253985707|gb|ACT50564.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
          Length = 699

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 21/51 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L + FG+++ +  +  E L  +  +   +A  I     +
Sbjct: 539 GIRNVGEATAKDLARYFGSLQALLAADIEQLQQVPDVGPIVAESIRQFLSE 589


>gi|260655066|ref|ZP_05860554.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1]
 gi|260630177|gb|EEX48371.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1]
          Length = 670

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +GP   R L+  FG+++ I +++ + L+ +EGI   IA  + +    + +  
Sbjct: 510 GIPLVGPSAARALVGRFGSLEAIGQATEDELSKVEGIGPAIAGSVASWLADSANRA 565


>gi|145629080|ref|ZP_01784879.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21]
 gi|144978583|gb|EDJ88306.1| excinuclease ABC subunit C [Haemophilus influenzae 22.1-21]
          Length = 79

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 8  ECPGVYQMLDIAGRVLYVGKAYNLQK 33
            PGVY+M D   +V+YVGKA +L+K
Sbjct: 47 HEPGVYRMYDDKDQVIYVGKAKDLKK 72


>gi|62859337|ref|NP_001016122.1| hypothetical protein LOC548876 [Xenopus (Silurana) tropicalis]
          Length = 215

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +I G+G ++   LLQ F ++  +S +S   L ++ G  + IA  I++ F
Sbjct: 167 KIPGVGKVKALQLLQHFPSIHKLSNASVAQLETVVG--RTIALSIHSFF 213


>gi|86607132|ref|YP_475895.1| DNA protecting protein DprA [Synechococcus sp. JA-3-3Ab]
 gi|86555674|gb|ABD00632.1| DNA protecting protein DprA [Synechococcus sp. JA-3-3Ab]
          Length = 381

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +I GIGP R + L + FG++K   ++    L  +EGI   +A  I
Sbjct: 31  QIKGIGPHRLKRLAEFFGSLKQAWQADALDLQQVEGIGPTLAQAI 75


>gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198]
 gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198]
          Length = 904

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           D + GI   GP   + L+  FG+++ I  +  E L  +  +SKKIA KI    HK  +
Sbjct: 183 DNVPGIPSIGPKTAQKLIHHFGSLEEIY-ARTEELEGV--VSKKIASKILE--HKEEA 235


>gi|300779557|ref|ZP_07089415.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
 gi|300505067|gb|EFK36207.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
          Length = 667

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + L+++F T++ +  ++ E L  +E I  KIA  I + F    +
Sbjct: 512 GIKHVGETVAKKLVKNFPTIEELKNATIEELCQVEDIGTKIAVSIVDFFQNPEN 565


>gi|187932891|ref|YP_001884644.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B str. Eklund
           17B]
 gi|254781292|sp|B2TIZ7|DNLJ_CLOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|187721044|gb|ACD22265.1| DNA ligase, NAD-dependent [Clostridium botulinum B str. Eklund 17B]
          Length = 667

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + ++  F ++  +  ++ E L S++ +   +A  +   F + 
Sbjct: 513 GIPNVGVKTAKDIVNKFKSIDGLKNATFEELVSVQDVGDIVAQDVIEFFKEE 564


>gi|298675601|ref|YP_003727351.1| ERCC4 domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288589|gb|ADI74555.1| ERCC4 domain protein [Methanohalobium evestigatum Z-7303]
          Length = 759

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           I+ IGP   R LL+ FG+V+ I +++ E L   E I  K A KI  
Sbjct: 706 ISDIGPRAARSLLKYFGSVENIMKANYEELQEAELIGPKTASKIRE 751


>gi|237732406|ref|ZP_04562887.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
 gi|226907945|gb|EEH93863.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
          Length = 671

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAHFGTLEALEAASIEELQKVPDVGIVVATHVFNFFAEESN 569


>gi|330903957|gb|EGH34529.1| excinuclease ABC subunit C [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 36

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           FG ++ +SR+S + +A   GISKK+A  IY + H  
Sbjct: 1   FGGLQELSRASIDEIAKAPGISKKLAESIYANLHSE 36


>gi|168216777|ref|ZP_02642402.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
 gi|182381157|gb|EDT78636.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
          Length = 662

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L++ F +++ +  ++ E L S++ +   +A  I   F + 
Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLENATFEELVSVQDVGDIVARSIIEFFKEE 563


>gi|166215590|sp|Q8XI62|DNLJ_CLOPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 662

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L++ F +++ + +++ E L S++ +   +A  I   F + 
Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563


>gi|110801053|ref|YP_696931.1| NAD-dependent DNA ligase LigA [Clostridium perfringens ATCC 13124]
 gi|123049624|sp|Q0TN59|DNLJ_CLOP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110675700|gb|ABG84687.1| DNA ligase, NAD-dependent [Clostridium perfringens ATCC 13124]
          Length = 662

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L++ F +++ + +++ E L S++ +   +A  I   F + 
Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563


>gi|92112835|ref|YP_572763.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
 gi|122990589|sp|Q1QZP4|DNLJ_CHRSD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91795925|gb|ABE58064.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
          Length = 691

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L + FG+++ +S +S E L ++E +   +A  I+  F +
Sbjct: 525 VGEATAASLARHFGSLQALSEASLEALEAVEDVGPVVARHIHTFFRQ 571


>gi|323488236|ref|ZP_08093486.1| GIY-YIG catalytic domain protein [Planococcus donghaensis MPA1U2]
 gi|323398094|gb|EGA90890.1| GIY-YIG catalytic domain protein [Planococcus donghaensis MPA1U2]
          Length = 127

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 1   MSSEQMP-ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIR 59
           +    +P +  G+ Q  + +G +L+VGKA  L++R+K +   +    +      ++  I 
Sbjct: 34  IDLHDIPRDKGGIIQFFNHSGELLFVGKARKLRQRVKKHFEDSVSPLKNHR--EEVYRIT 91

Query: 60  FTVTCTEVEALLLEANMIKRLKPRFNI 86
            +     +E  + E  +I   K R+N+
Sbjct: 92  VSFVEDPMEREIYETYLINAHKARYNV 118


>gi|182625562|ref|ZP_02953333.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
 gi|177909250|gb|EDT71715.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
          Length = 662

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L++ F +++ + +++ E L S++ +   +A  I   F + 
Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563


>gi|168211265|ref|ZP_02636890.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
           3626]
 gi|170710700|gb|EDT22882.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
           3626]
          Length = 662

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L++ F +++ + +++ E L S++ +   +A  I   F + 
Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563


>gi|169347054|ref|ZP_02865996.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
 gi|169296737|gb|EDS78866.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
          Length = 662

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L++ F +++ + +++ E L S++ +   +A  I   F + 
Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563


>gi|18311241|ref|NP_563175.1| NAD-dependent DNA ligase LigA [Clostridium perfringens str. 13]
 gi|18145924|dbj|BAB81965.1| DNA ligase [Clostridium perfringens str. 13]
          Length = 665

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L++ F +++ + +++ E L S++ +   +A  I   F + 
Sbjct: 515 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 566


>gi|206890890|ref|YP_002248891.1| DNA processing protein DprA [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742828|gb|ACI21885.1| DNA processing protein DprA [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 368

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L+EI  IGP+  + L   FG  K I  ++ + LA +EGI  + A +I N 
Sbjct: 11  ALNEIKDIGPVLLKRLFSRFGLAKQIFNATIDELAYVEGIGIEKAKRIKNF 61


>gi|168205087|ref|ZP_02631092.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
 gi|170663244|gb|EDT15927.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
          Length = 662

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L++ F +++ + +++ E L S++ +   +A  I   F + 
Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563


>gi|168213168|ref|ZP_02638793.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
 gi|170715278|gb|EDT27460.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
          Length = 662

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L++ F +++ + +++ E L S++ +   +A  I   F + 
Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563


>gi|313674932|ref|YP_004052928.1| DNA ligase, nad-dependent [Marivirga tractuosa DSM 4126]
 gi|312941630|gb|ADR20820.1| DNA ligase, NAD-dependent [Marivirga tractuosa DSM 4126]
          Length = 671

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   F  +  ++++S + L  +  I ++IA  +  +FH   +
Sbjct: 519 VGKTVAEKLGAHFKNIDNLAKASFDELIEVPEIGERIAQSVVEYFHDEDN 568


>gi|332519658|ref|ZP_08396122.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
 gi|332044217|gb|EGI80411.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
          Length = 665

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L + + +++ + ++S E L  ++ I  KIA  + + F    +
Sbjct: 514 VGETVAKKLAKHYKSIEALEQASIEDLEKVDEIGIKIAESVVSFFASEEN 563


>gi|78485583|ref|YP_391508.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2]
 gi|123741582|sp|Q31G89|DNLJ_THICR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78363869|gb|ABB41834.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2]
          Length = 672

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            K  YS    I  +G +  + L   F  +  I ++  E L ++  + + +A  I N F +
Sbjct: 509 AKFIYS--LGIPEVGEVTAKNLANHFKDLNAIKQAEFEELITLNDVGEVVAEHIVNFFKE 566

Query: 610 NTSHT 614
             + +
Sbjct: 567 PHNES 571


>gi|110803876|ref|YP_699521.1| NAD-dependent DNA ligase LigA [Clostridium perfringens SM101]
 gi|122956526|sp|Q0SQT6|DNLJ_CLOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110684377|gb|ABG87747.1| DNA ligase, NAD-dependent [Clostridium perfringens SM101]
          Length = 662

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L++ F +++ + +++ E L S++ +   +A  I   F + 
Sbjct: 512 GIPNVGVKTAKDLVKRFESLENLEKATFEELVSVQDVGDIVARSIIEFFKEE 563


>gi|257052562|ref|YP_003130395.1| Hef nuclease [Halorhabdus utahensis DSM 12940]
 gi|256691325|gb|ACV11662.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 833

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 27/47 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            I  +GP+  R LL+ FG+V+ +  ++ + L  ++G+ +  A +I  
Sbjct: 779 SIADVGPVIARTLLEHFGSVQAVMTANEDDLLDVDGVGEVTAERIRE 825


>gi|303258051|ref|ZP_07344059.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
 gi|331000674|ref|ZP_08324326.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859070|gb|EFL82153.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
 gi|329570827|gb|EGG52542.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 684

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 552 AAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  + L+       I  +G    R L   FG +K +  +S E L  +E I    A  I +
Sbjct: 512 SKKTTLERFLYAISIPEVGEATARNLASHFGALKPLEEASLEQLQEVEDIGPSGAENILH 571

Query: 606 HFHKNTS 612
            F +  +
Sbjct: 572 FFAEPAN 578


>gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 359

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           E++P   GVY + D  G+V+Y+GK  N++  I +       + R   +  +  ++ F  T
Sbjct: 191 EEIPAVLGVYYIHDANGKVIYIGKGKNIKAEINNLFIKT--SRRSVRVQERATSVSFDKT 248

Query: 64  CTEV 67
             E+
Sbjct: 249 GNEL 252


>gi|300866999|ref|ZP_07111669.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300334982|emb|CBN56835.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 291

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 15/93 (16%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR--ITHMISQINNIRFT 61
           +++P+ PG+Y ++    ++ Y+G+A NL+KR   +   ++H ++      + +I  I++ 
Sbjct: 19  DRLPDLPGIYFVVGEREQLFYIGQAKNLRKR---WAGKSHHRYKQFARKGLDKII-IKYI 74

Query: 62  VTC-TEV-EALLLEANMIKRLKPRFNILLRDDK 92
           +   +E+ E   LE   IK+  P    LL D K
Sbjct: 75  LASVSELNE---LECKYIKQFNP----LLNDGK 100


>gi|258517114|ref|YP_003193336.1| Mg chelatase, subunit ChlI [Desulfotomaculum acetoxidans DSM 771]
 gi|257780819|gb|ACV64713.1| Mg chelatase, subunit ChlI [Desulfotomaculum acetoxidans DSM 771]
          Length = 748

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           L ++ GIGP+ ++ LL+ FG+ + I  +S   L +I GI+ K   KI
Sbjct: 390 LSQVKGIGPILQKKLLEKFGSPESIYLASGMELMTIAGINNKTVEKI 436


>gi|119717662|ref|YP_924627.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
 gi|166216220|sp|A1SMA5|DNLJ_NOCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119538323|gb|ABL82940.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
          Length = 752

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +GP   R L   FG++  I  ++ E LA+ EG+   IA  +   F +
Sbjct: 595 SIRHVGPKAGRALATEFGSMAAIRAATEEQLAAAEGVGPTIAEAVIEWFKE 645


>gi|53719773|ref|YP_108759.1| DNA ligase [Burkholderia pseudomallei K96243]
 gi|167816389|ref|ZP_02448069.1| DNA ligase [Burkholderia pseudomallei 91]
 gi|81379503|sp|Q63T07|DNLJ_BURPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52210187|emb|CAH36166.1| DNA ligase [Burkholderia pseudomallei K96243]
          Length = 691

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 539 RFAITTHRKR---RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           RFA  + R      +KA ++ L        I  +G    + L + FG++  I  +  + L
Sbjct: 504 RFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL 563

Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614
             +  +   +A  I+  F +  + T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRT 588


>gi|126441747|ref|YP_001059474.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 668]
 gi|166215567|sp|A3NAV3|DNLJ_BURP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126221240|gb|ABN84746.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 668]
          Length = 691

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 539 RFAITTHRKR---RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           RFA  + R      +KA ++ L        I  +G    + L + FG++  I  +  + L
Sbjct: 504 RFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL 563

Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614
             +  +   +A  I+  F +  + T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRT 588


>gi|126453906|ref|YP_001066758.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
 gi|134277579|ref|ZP_01764294.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
 gi|167739178|ref|ZP_02411952.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 14]
 gi|167824768|ref|ZP_02456239.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 9]
 gi|167846299|ref|ZP_02471807.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei B7210]
 gi|167894881|ref|ZP_02482283.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 7894]
 gi|167903270|ref|ZP_02490475.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei NCTC 13177]
 gi|167919520|ref|ZP_02506611.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BCC215]
 gi|217421846|ref|ZP_03453350.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
 gi|226198948|ref|ZP_03794511.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
 gi|237812814|ref|YP_002897265.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
 gi|242317106|ref|ZP_04816122.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
 gi|254179316|ref|ZP_04885915.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
 gi|254198094|ref|ZP_04904516.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
 gi|166215566|sp|A3NWN7|DNLJ_BURP0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126227548|gb|ABN91088.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
 gi|134251229|gb|EBA51308.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
 gi|169654835|gb|EDS87528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
 gi|184209856|gb|EDU06899.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
 gi|217395588|gb|EEC35606.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
 gi|225929048|gb|EEH25072.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
 gi|237506455|gb|ACQ98773.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
 gi|242140345|gb|EES26747.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
          Length = 691

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 539 RFAITTHRKR---RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           RFA  + R      +KA ++ L        I  +G    + L + FG++  I  +  + L
Sbjct: 504 RFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL 563

Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614
             +  +   +A  I+  F +  + T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRT 588


>gi|53723744|ref|YP_103200.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
 gi|67639492|ref|ZP_00438344.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
 gi|121600643|ref|YP_993378.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
 gi|124385135|ref|YP_001029185.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10229]
 gi|126450807|ref|YP_001080885.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10247]
 gi|167004074|ref|ZP_02269848.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
 gi|254178005|ref|ZP_04884660.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
 gi|254206491|ref|ZP_04912843.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
 gi|254358100|ref|ZP_04974373.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
 gi|81604820|sp|Q62JB9|DNLJ_BURMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215563|sp|A3MKU9|DNLJ_BURM7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215564|sp|A2SB66|DNLJ_BURM9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215565|sp|A1V575|DNLJ_BURMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52427167|gb|AAU47760.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
 gi|121229453|gb|ABM51971.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
 gi|124293155|gb|ABN02424.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10229]
 gi|126243677|gb|ABO06770.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10247]
 gi|147753934|gb|EDK60999.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
 gi|148027227|gb|EDK85248.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
 gi|160699044|gb|EDP89014.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
 gi|238520039|gb|EEP83503.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
 gi|243060513|gb|EES42699.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
          Length = 691

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 539 RFAITTHRKR---RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           RFA  + R      +KA ++ L        I  +G    + L + FG++  I  +  + L
Sbjct: 504 RFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMDAPIDAL 563

Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614
             +  +   +A  I+  F +  + T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRT 588


>gi|150021387|ref|YP_001306741.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
 gi|190359297|sp|A6LN55|DNLJ_THEM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149793908|gb|ABR31356.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
          Length = 662

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  +PL        I  +G    ++L + F  ++ +S ++ + L  IE I  +IA  I 
Sbjct: 497 KSKKTPLNRVIVGLGIPMVGEKTSKILAEKFKNIEKLSSATYDELIKIENIGPEIAKSIV 556

Query: 605 NHFHKNTS 612
            +F    +
Sbjct: 557 TYFQNEKT 564


>gi|160902460|ref|YP_001568041.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
 gi|190359269|sp|A9BJX5|DNLJ_PETMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160360104|gb|ABX31718.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
          Length = 668

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F  +  +  +  + L  IEGI + IA  I   F +  
Sbjct: 515 GIPNVGSKTAKDLANHFKNLDSLIDAKFDELVEIEGIGEDIANAIIKFFSQEE 567


>gi|329942957|ref|ZP_08291736.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10]
 gi|332287548|ref|YP_004422449.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC]
 gi|313848123|emb|CBY17124.1| putative DNA ligase [Chlamydophila psittaci RD1]
 gi|325506604|gb|ADZ18242.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC]
 gi|328815217|gb|EGF85206.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10]
 gi|328914798|gb|AEB55631.1| DNA ligase, NAD-dependent [Chlamydophila psittaci 6BC]
          Length = 660

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 551 KAAYSPLD------EIN--GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           KA   PLD       I   GIG      L Q F +++ +  +S + L S+EGI  K+A  
Sbjct: 497 KAKSVPLDRFLTALGIPYVGIGGA--NALAQHFLSLESVMSASLDDLKSVEGIGDKVAES 554

Query: 603 IYNHFHK 609
           I  +F++
Sbjct: 555 IVAYFNQ 561


>gi|283779823|ref|YP_003370578.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
 gi|283438276|gb|ADB16718.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
          Length = 676

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 550 KKAA-YSPLDE---INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            K+   S L     I  IG    ++L + FGT+  I +++ E L+ +  + +  A  +Y 
Sbjct: 504 SKSRPLSRLLNGLSIRHIGSNGSQVLARHFGTLDAIRQATLEDLSRVSEVGEITAASVYE 563

Query: 606 HFHKNTSHT 614
             H +   T
Sbjct: 564 FLHSDYGKT 572


>gi|76801093|ref|YP_326101.1| NAD-dependent DNA ligase LigA [Natronomonas pharaonis DSM 2160]
 gi|121729348|sp|Q3ITK1|DNLJ_NATPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76556958|emb|CAI48532.1| DNA ligase (NAD) [Natronomonas pharaonis DSM 2160]
          Length = 691

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           A  S L  I G+G      + + FGT+  +  ++ E L +++GI   +  +I   F  + 
Sbjct: 529 AFLSAL-GIPGVGTTTAADIAREFGTLDAVMDATAEELRAVDGIGPTLGGEIAEFFDSDR 587

Query: 612 SHT 614
           +  
Sbjct: 588 NQQ 590


>gi|325962711|ref|YP_004240617.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468798|gb|ADX72483.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
          Length = 767

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   R L  +FG++  I ++S E LA ++G+   IA  +   F ++
Sbjct: 583 SIRHVGPRASRALATAFGSMDAIRQASEEELAHVDGVGPTIAAALKEWFAED 634


>gi|254517673|ref|ZP_05129729.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
 gi|226911422|gb|EEH96623.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
          Length = 663

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + L+  F +++ +  +S + L S++ +   +A  +   F +  +
Sbjct: 511 GIPNVGVKTAKDLVNKFKSLEGLKSASFDDLVSVQDVGGIVAKCVLEFFKEEKA 564


>gi|319779225|ref|YP_004130138.1| DNA ligase [Taylorella equigenitalis MCE9]
 gi|317109249|gb|ADU91995.1| DNA ligase [Taylorella equigenitalis MCE9]
          Length = 681

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +  K    S       I  +G    R L + FG +  I ++S E L S+  + + +A  I
Sbjct: 511 QASKSTTLSRFLFALGIRHVGETTARDLAKYFGDLYSIMQASTEELVSVPNVGEVMATSI 570

Query: 604 YNHFHK 609
           +  F++
Sbjct: 571 HTFFNE 576


>gi|291296053|ref|YP_003507451.1| DNA ligase NAD-dependent [Meiothermus ruber DSM 1279]
 gi|290471012|gb|ADD28431.1| DNA ligase, NAD-dependent [Meiothermus ruber DSM 1279]
          Length = 666

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R L + FG +  I +++ E L ++  I++  A  I+   
Sbjct: 509 GIPQVGESTARALAKRFGHLDSILKATVEELDAVPDIAETTAQAIHQAL 557


>gi|149721939|ref|XP_001490071.1| PREDICTED: similar to Fanconi anemia-associated protein, 24 kDa
           [Equus caballus]
          Length = 215

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 548 RRKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           R+K+   S L       +I G+G  +  LLLQ F +++ +S +S   L  + G    +A 
Sbjct: 148 RKKRPLISELSLLRTVQQIPGVGKTKAVLLLQKFPSIQQLSNASVPDLEPVVG--PAVAQ 205

Query: 602 KIYNHFHKNT 611
            ++  F +++
Sbjct: 206 HVHGFFTQSS 215


>gi|76810783|ref|YP_333980.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
 gi|167720173|ref|ZP_02403409.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei DM98]
 gi|167911510|ref|ZP_02498601.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 112]
 gi|254189298|ref|ZP_04895809.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
 gi|254259109|ref|ZP_04950163.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
 gi|254297202|ref|ZP_04964655.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
 gi|123771899|sp|Q3JR23|DNLJ_BURP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76580236|gb|ABA49711.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
 gi|157807762|gb|EDO84932.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
 gi|157936977|gb|EDO92647.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
 gi|254217798|gb|EET07182.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
          Length = 691

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 539 RFAITTHRKR---RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           RFA  + R      +KA ++ L        I  +G    + L + FG++  I  +  + L
Sbjct: 504 RFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMHAPIDAL 563

Query: 590 ASIEGISKKIACKIYNHFHKNTSHT 614
             +  +   +A  I+  F +  + T
Sbjct: 564 LEVNDVGPIVAESIHQFFAEEHNRT 588


>gi|331653837|ref|ZP_08354838.1| DNA ligase, NAD-dependent [Escherichia coli M718]
 gi|331048686|gb|EGI20762.1| DNA ligase, NAD-dependent [Escherichia coli M718]
          Length = 671

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  +YN F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVYNFFAEESN 569


>gi|91772921|ref|YP_565613.1| Hef nuclease [Methanococcoides burtonii DSM 6242]
 gi|91711936|gb|ABE51863.1| Hef helicase [Methanococcoides burtonii DSM 6242]
          Length = 769

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I+ IGP   + LL  FGTV+ + ++  + L  ++ I  K A K+    
Sbjct: 715 SISNIGPNAAKNLLDHFGTVENVMKAELDELKEVKNIGPKTAGKMREIL 763


>gi|149433218|ref|XP_001520644.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 211

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 544 THRKRRKKAAYS-PLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
             +K+R + + S  L    +I G+G ++  LL++ F T++ +  +S + L  + G  + I
Sbjct: 142 FLKKKRHQLSESAVLLTVQQIPGVGKVKALLLMKKFATLQRLCDASIQELEQVVG--QTI 199

Query: 600 ACKIYNHFHKN 610
           A +++    ++
Sbjct: 200 AQQVHTFLTES 210


>gi|118594798|ref|ZP_01552145.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
 gi|118440576|gb|EAV47203.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
          Length = 671

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 19/88 (21%)

Query: 539 RFAITTHRKRRK--------KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRS 584
           RFA     K+          K+  + L        I  +G      L + FG++  I  +
Sbjct: 487 RFA-----KKSAENLIESIEKSKKTTLGKFIYALGIRNVGEATAYDLAKQFGSIDKIMSA 541

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTS 612
           S E+L SI  I   +A  I N+F+++T+
Sbjct: 542 SKESLLSIHDIGPTVATSIQNYFNEDTN 569


>gi|330817444|ref|YP_004361149.1| DNA ligase [Burkholderia gladioli BSR3]
 gi|327369837|gb|AEA61193.1| DNA ligase [Burkholderia gladioli BSR3]
          Length = 691

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG+++ I  ++ E L  +  +   +A  ++
Sbjct: 520 KARHTTLGRFIYALGIRHVGESTAKDLAKHFGSLQPIMDATTEQLLEVNDVGPVVAESLH 579

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 580 QFFAEEHNRT 589


>gi|257054924|ref|YP_003132756.1| NAD-dependent DNA ligase LigA [Saccharomonospora viridis DSM 43017]
 gi|256584796|gb|ACU95929.1| DNA ligase, NAD-dependent [Saccharomonospora viridis DSM 43017]
          Length = 731

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L + FG++  I  +S E LA ++G+   IA  +   F
Sbjct: 565 SIRHVGPTAAQALAREFGSIDAIDAASEERLAEVDGVGPTIAKAVREWF 613


>gi|291223953|ref|XP_002731972.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 225

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I  +G ++ R LL+ FG++K I+ +S E +A+I  I +  A  +    
Sbjct: 174 IPKVGEVKARALLEKFGSIKGIATASTEEIANI--IGRANAEHVKMFL 219


>gi|21223850|ref|NP_629629.1| NAD-dependent DNA ligase LigA [Streptomyces coelicolor A3(2)]
 gi|7674017|sp|Q9Z585|DNLJ1_STRCO RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|4467245|emb|CAB37570.1| putative DNA ligase [Streptomyces coelicolor A3(2)]
          Length = 735

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 26/119 (21%)

Query: 496 SIAKGPKRSAGMEKF--FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA 553
            + K      G EK        E      +   L  +Q + +EA         K R  A 
Sbjct: 516 GLPKRD-PKTGEEKIATVFANKEG---EPKKNTLALLQHI-EEA---------KTRPLAR 561

Query: 554 YSPLDEING-----IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +     ING     +GP+  + L + F ++  I +++ E LAS +G+   IA  +   F
Sbjct: 562 F-----INGLSIRYVGPVAAQALAREFRSIDRIEQATEEELASTDGVGGAIATAVKEWF 615


>gi|110666996|ref|YP_656807.1| Hef nuclease [Haloquadratum walsbyi DSM 16790]
 gi|109624743|emb|CAJ51150.1| probable nuclease domain protein/ probable ATP-dependent RNA
           helicase [Haloquadratum walsbyi DSM 16790]
          Length = 851

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 542 ITTHRKRRKKAAYSPLD----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           I+ H ++  K      +     I  IGP+  + LL +FGTV+ +  +  + L +++G+  
Sbjct: 777 ISVHGEKSAKTLQEQQEYVVSSIADIGPVTAQSLLDAFGTVEAVMTAGEDDLTAVDGVGA 836

Query: 598 KIACKIYN 605
             A +I +
Sbjct: 837 VTAARIRD 844


>gi|299529801|ref|ZP_07043234.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
 gi|298722215|gb|EFI63139.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
          Length = 708

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    R L + FG +  I  +S E L  ++ +   +A  I+
Sbjct: 537 KSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDASVEELLQVKDVGPVVADSIH 596

Query: 605 NHF 607
             F
Sbjct: 597 TFF 599


>gi|296132371|ref|YP_003639618.1| DNA ligase, NAD-dependent [Thermincola sp. JR]
 gi|296030949|gb|ADG81717.1| DNA ligase, NAD-dependent [Thermincola potens JR]
          Length = 665

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           AI   R + +K   S +    I  +G    ++L   FG++  +  +  E L +I  I  K
Sbjct: 497 AIE--RSK-QKDLASLIFALGIRHVGARAGKILAAHFGSMDRLKEARQEELTAIPEIGPK 553

Query: 599 IACKIYNHFH 608
           +A  I  +F 
Sbjct: 554 MAESIVAYFR 563


>gi|264678823|ref|YP_003278730.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
 gi|262209336|gb|ACY33434.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
          Length = 708

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    R L + FG +  I  +S E L  ++ +   +A  I+
Sbjct: 537 KSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDASVEELLQVKDVGPVVADSIH 596

Query: 605 NHF 607
             F
Sbjct: 597 TFF 599


>gi|221066629|ref|ZP_03542734.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
 gi|220711652|gb|EED67020.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
          Length = 708

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    R L + FG +  I  +S E L  ++ +   +A  I+
Sbjct: 537 KSKSTTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDASVEELLQVKDVGPVVADSIH 596

Query: 605 NHF 607
             F
Sbjct: 597 TFF 599


>gi|328552313|gb|AEB22805.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens TA208]
          Length = 668

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L+       I  IG    + L   F +++ + +++ E L +++ I +K+A  +
Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEELLAVDEIGEKMADAV 555

Query: 604 YNHFHK 609
             +F K
Sbjct: 556 ITYFRK 561


>gi|308172548|ref|YP_003919253.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
 gi|307605412|emb|CBI41783.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
 gi|328910657|gb|AEB62253.1| DNA ligase [Bacillus amyloliquefaciens LL3]
          Length = 669

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L+       I  IG    + L   F +++ + +++ E L +++ I +K+A  +
Sbjct: 497 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEELLAVDEIGEKMADAV 556

Query: 604 YNHFHK 609
             +F K
Sbjct: 557 ITYFRK 562


>gi|196003470|ref|XP_002111602.1| hypothetical protein TRIADDRAFT_55800 [Trichoplax adhaerens]
 gi|190585501|gb|EDV25569.1| hypothetical protein TRIADDRAFT_55800 [Trichoplax adhaerens]
          Length = 211

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 544 THRK---RRK-----KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            H K   +RK     +A  S L  +  +G  + RLLL  F ++  IS +S E LA + G 
Sbjct: 142 YHNKFLVKRKPEPINQAVVSTLKLLPSVGETKARLLLNRFHSIAGISHASVEELAEVIGS 201

Query: 596 SKKIACKIYNHF 607
           S  +A  +   F
Sbjct: 202 SSAVA--VKKAF 211


>gi|119490381|ref|ZP_01622859.1| hypothetical protein L8106_13805 [Lyngbya sp. PCC 8106]
 gi|119454040|gb|EAW35194.1| hypothetical protein L8106_13805 [Lyngbya sp. PCC 8106]
          Length = 290

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 6  MPECPGVYQMLDIAGRVLYVGKAYNLQKRI--KSYMHSNNHTHRITHMISQINNIRFTVT 63
          +P+ PG+Y ++D   ++LY+G A NL+ R   +S+        +    + +I  + +   
Sbjct: 19 LPDKPGIYFVIDEHNQILYIGLAKNLRSRWGGRSHHRYKQLARKG---LDKIY-LCYVEV 74

Query: 64 CTEVEALLLEANMIKRLKPRFN 85
            E E   LE   I++LKP  N
Sbjct: 75 P-EPELKTLEKAYIEQLKPPLN 95


>gi|284166080|ref|YP_003404359.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284015735|gb|ADB61686.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 220

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I GIGP     L + + TV+ +  +S E L  IEGI ++ A  I   F ++
Sbjct: 166 IEGIGPELAATLYERYPTVESLLEASLEELTEIEGIGERRARTIDAAFRED 216


>gi|296104078|ref|YP_003614224.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058537|gb|ADF63275.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 671

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT+  + ++S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLDALEKASIEELQKVPDVGIVVATHVFNFFAEESN 569


>gi|258517150|ref|YP_003193372.1| DNA protecting protein DprA [Desulfotomaculum acetoxidans DSM 771]
 gi|257780855|gb|ACV64749.1| DNA protecting protein DprA [Desulfotomaculum acetoxidans DSM 771]
          Length = 368

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           L ++ GIGP+ ++ LL  FG+ + I  +S   L +I GI+ K   KI
Sbjct: 10  LTQLKGIGPILQKKLLDKFGSPESIYLASGTELMTIAGINNKTVEKI 56


>gi|149197252|ref|ZP_01874304.1| SMF family protein involved in DNA uptake [Lentisphaera araneosa
           HTCC2155]
 gi|149139798|gb|EDM28199.1| SMF family protein involved in DNA uptake [Lentisphaera araneosa
           HTCC2155]
          Length = 380

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L+ + G+GP     L++ F   + I ++S + L    GI  ++A +I NH
Sbjct: 11  LNMLPGVGPRTYNKLVKKFKKSENIFKASRKELLKCPGIGPRVAEEILNH 60


>gi|328950509|ref|YP_004367844.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
 gi|328450833|gb|AEB11734.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
          Length = 676

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    R L + FGT+  +  ++PE L  +E + +  A +I+   H
Sbjct: 514 GIPQVGEALARTLARRFGTLDRLLEATPEELLEVEDVGELTARRIHETLH 563


>gi|89900985|ref|YP_523456.1| DNA ligase [Rhodoferax ferrireducens T118]
 gi|123397178|sp|Q21WC8|DNLJ_RHOFD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89345722|gb|ABD69925.1| DNA ligase, NAD-dependent [Rhodoferax ferrireducens T118]
          Length = 690

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L + FG++  +  +S E L  +  I   +A  + 
Sbjct: 521 KSKQTTLPRFLFGLGIRHVGEATAKELARHFGSLDAVMDASLEQLLQVNDIGPIVAQSLR 580

Query: 605 NHF 607
             F
Sbjct: 581 TFF 583


>gi|312278868|gb|ADQ63525.1| DNA ligase [Streptococcus thermophilus ND03]
          Length = 648

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    + LL+SFGT+K ++ +  + +A+++G+ + IA  I  +F K  + 
Sbjct: 498 GIRHVGAKVSKQLLESFGTIKELASADVQAIAAVDGLGEVIAKSIQRYFAKEEAQ 552


>gi|116628243|ref|YP_820862.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMD-9]
 gi|116101520|gb|ABJ66666.1| NAD-dependent DNA ligase [Streptococcus thermophilus LMD-9]
          Length = 648

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    + LL+SFGT+K ++ +  + +A+++G+ + IA  I  +F K  + 
Sbjct: 498 GIRHVGAKVSKQLLESFGTIKELASADVQAIAAVDGLGEVIAKSIQRYFAKEEAQ 552


>gi|166216285|sp|Q03JF6|DNLJ_STRTD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 652

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    + LL+SFGT+K ++ +  + +A+++G+ + IA  I  +F K  + 
Sbjct: 502 GIRHVGAKVSKQLLESFGTIKELASADVQAIAAVDGLGEVIAKSIQRYFAKEEAQ 556


>gi|55821530|ref|YP_139972.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMG
           18311]
 gi|55823458|ref|YP_141899.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus CNRZ1066]
 gi|81559086|sp|Q5LYL9|DNLJ_STRT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81560280|sp|Q5M382|DNLJ_STRT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|55737515|gb|AAV61157.1| DNA ligase [Streptococcus thermophilus LMG 18311]
 gi|55739443|gb|AAV63084.1| DNA ligase [Streptococcus thermophilus CNRZ1066]
          Length = 652

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    + LL+SFGT+K ++ +  + +A+++G+ + IA  I  +F K  + 
Sbjct: 502 GIRHVGAKVSKQLLESFGTIKELASADVQAIAAVDGLGEVIAKSIQRYFAKEEAQ 556


>gi|255535523|ref|YP_003095894.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
 gi|255341719|gb|ACU07832.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
          Length = 667

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + L+++F ++  +  ++   L  +E I  KIA  I   F    +
Sbjct: 512 GIKHVGETVAKKLVKNFNSIDDLKNATAAELVQVEDIGLKIAESITEFFKNPEN 565


>gi|311747945|ref|ZP_07721730.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
 gi|126574918|gb|EAZ79276.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
          Length = 791

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           IG     LL Q FG++  ++ +S E L  I G+ + +   I+  F +  +
Sbjct: 640 IGENTAALLAQHFGSIDKLNEASTEELLEINGVGETLVQSIHEFFSRQEN 689


>gi|308450080|ref|XP_003088175.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
 gi|308249279|gb|EFO93231.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
          Length = 1202

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R L   FG++  I  +S E L++++G+   IA  +   F
Sbjct: 780 NIRHVGPVAARALADWFGSLDAIRAASVEELSAVDGVGGIIAESLLEWF 828


>gi|29840375|ref|NP_829481.1| NAD-dependent DNA ligase LigA [Chlamydophila caviae GPIC]
 gi|75539575|sp|Q822R2|DNLJ_CHLCV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29834724|gb|AAP05359.1| DNA ligase [Chlamydophila caviae GPIC]
          Length = 662

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA  +PLD       I  +G      L Q F  ++ +  +S E L SIEGI  K+A  I 
Sbjct: 497 KAKQAPLDRFIAALGIPYVGVRVASALAQHFLNLEAVMGASLEELKSIEGIGDKVAESIE 556

Query: 605 NHFHKNTS 612
            +F++  +
Sbjct: 557 AYFNQQDT 564


>gi|159036755|ref|YP_001536008.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
 gi|190359280|sp|A8M5E3|DNLJ_SALAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157915590|gb|ABV97017.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
          Length = 710

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L + F +++ I ++  E L++++G+   IA  +   F
Sbjct: 545 SIRHVGPTAAQALARHFRSIEAIDQAGEEELSAVDGVGPTIAASVREWF 593


>gi|291613759|ref|YP_003523916.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
 gi|291583871|gb|ADE11529.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
          Length = 701

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L + FG ++ I +++ E L ++  +   +A  I 
Sbjct: 530 KSKSTALNRFLFALGIRHVGESTAKDLARHFGKLEAIMQANVEQLLAVPDVGPVVAQSIV 589

Query: 605 NHF 607
           + F
Sbjct: 590 DFF 592


>gi|304440548|ref|ZP_07400435.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371026|gb|EFM24645.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 650

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I+ +G    R L   F +++ +  ++ E L SI+ +    A +IY  FH  
Sbjct: 500 GIHNVGIKAARDLADHFKSLEGLMNATEEELVSIDDVGPITAHEIYEFFHDE 551


>gi|149372321|ref|ZP_01891509.1| putative DNA ligase [unidentified eubacterium SCB49]
 gi|149354711|gb|EDM43274.1| putative DNA ligase [unidentified eubacterium SCB49]
          Length = 677

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G    + L + F ++  +  +S E L +++ I  +IA  +   F   T  
Sbjct: 514 VGETVAKKLAKHFKSIDALMEASFEQLIAVDEIGDRIAESVLAFFKIETQD 564


>gi|116669859|ref|YP_830792.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
 gi|166215392|sp|A0JUH2|DNLJ_ARTS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116609968|gb|ABK02692.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
          Length = 790

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   R L  +FG++  I  +S E LA ++G+   IA  +   F ++
Sbjct: 605 SIRHVGPRASRALATAFGSMDAIREASEEELAHVDGVGPVIAAALKEWFAED 656


>gi|294340191|emb|CAZ88563.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp.
           3As]
          Length = 686

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    + L + FG +  I  +  E L  +  +   +A  I   F
Sbjct: 532 GIRHVGEATAKDLARHFGGLDAILDAPLEQLLEVPDVGPVVAQSIRTFF 580


>gi|256824829|ref|YP_003148789.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547]
 gi|256688222|gb|ACV06024.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547]
          Length = 770

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   F T++ I  +S E LA++EG+   IA  +   F
Sbjct: 592 SIRHVGPTAARALAGHFATMEAIRAASTEELAAVEGVGPTIAEAVTEWF 640


>gi|120600544|ref|YP_965118.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560637|gb|ABM26564.1| helix-hairpin-helix motif [Shewanella sp. W3-18-1]
          Length = 175

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KR+K      L  +  + P     LL  F  ++ I  +  E L  +EGI K+ A KI   
Sbjct: 113 KRKKNQQLFILQSLPEVDPKLASRLLYHFKNIEAIFTAPEEALIRVEGIGKEKARKIREA 172

Query: 607 F 607
            
Sbjct: 173 L 173


>gi|292656668|ref|YP_003536565.1| 50S ribosomal protein L32.eR [Haloferax volcanii DS2]
 gi|291371315|gb|ADE03542.1| ribosomal protein L32.eR [Haloferax volcanii DS2]
          Length = 235

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + L++I+G+GP +   L ++ F +V  +  +S   LA ++GI   +A +I  
Sbjct: 6   TELEDISGVGPSKADALREAGFESVDDVQAASQSELAEVDGIGNALAARIKA 57


>gi|195941083|ref|ZP_03086465.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 504

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT+  + +++ + L  +  +   +A  +YN F + ++
Sbjct: 353 VGEATAAGLAAYFGTLDALEKATIDELQKVPDVGIVVATHVYNFFAEESN 402


>gi|256785054|ref|ZP_05523485.1| NAD-dependent DNA ligase LigA [Streptomyces lividans TK24]
 gi|289768947|ref|ZP_06528325.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
 gi|289699146|gb|EFD66575.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
          Length = 735

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 26/119 (21%)

Query: 496 SIAKGPKRSAGMEKF--FVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAA 553
            + K      G EK        E      +   L  +Q + +EA         K R  A 
Sbjct: 516 GLPKRD-PKTGEEKIATVFANKEG---EPKKNTLALLQHI-EEA---------KTRPLAR 561

Query: 554 YSPLDEING-----IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +     ING     +GP+  + L + F ++  I +++ E LAS +G+   IA  +   F
Sbjct: 562 F-----INGLSIRYVGPVAAQALAREFRSIDRIEQATEEELASTDGVGGTIATAVKEWF 615


>gi|308273580|emb|CBX30182.1| Protein smf [uncultured Desulfobacterium sp.]
          Length = 373

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L  + GIG    + L++ F + + +  +S   L+SI+GIS+++A  I   
Sbjct: 9   ALKSVPGIGNYLFKKLIKRFKSPEAVFEASCSELSSIDGISERLAGVIKKF 59


>gi|16332266|ref|NP_442994.1| hypothetical protein sll0441 [Synechocystis sp. PCC 6803]
 gi|1653896|dbj|BAA18806.1| sll0441 [Synechocystis sp. PCC 6803]
          Length = 460

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 28/97 (28%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN----HTHRITHM-------I 52
           +++PE PG+Y +L+    + Y+G + NLQKR  S+   ++       +I  +       +
Sbjct: 378 DELPEQPGIYFVLNKDDAIQYIGMSVNLQKRWYSHHRQSDFDLIEDGKIAFITSLPKHYL 437

Query: 53  SQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLR 89
            +I ++                 +IK   P+ NI L+
Sbjct: 438 QEIESV-----------------LIKSFVPKLNIKLK 457


>gi|148263373|ref|YP_001230079.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4]
 gi|190359259|sp|A5GA98|DNLJ_GEOUR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146396873|gb|ABQ25506.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4]
          Length = 672

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    +LL  +FG+++ +  +S E L SI  +  ++A  I   FH 
Sbjct: 518 GIRHVGEHTAKLLANAFGSMENLEHASEEELLSIREVGPQVAQSIRTFFHN 568


>gi|260904918|ref|ZP_05913240.1| DNA ligase, NAD-dependent [Brevibacterium linens BL2]
          Length = 729

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   F T++ I  +  E L++++GI   IA  I + F
Sbjct: 573 SIRHVGPTAARTLAAHFRTLEAIRAAELEELSAVDGIGSTIAASIRDWF 621


>gi|302392792|ref|YP_003828612.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501]
 gi|302204869|gb|ADL13547.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501]
          Length = 671

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +  +G     LL   F +++ +  +  E L  I GI + +A +I + F
Sbjct: 518 GVPNVGTRTAELLADKFKSLERLMEADKEELVEINGIGEVVAEEIVDFF 566


>gi|11499053|ref|NP_070287.1| Hef nuclease [Archaeoglobus fulgidus DSM 4304]
 gi|2649107|gb|AAB89786.1| ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus DSM
           4304]
          Length = 741

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 545 HRKRRKKAAYSPLD----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           H  + K+      +     I+ +G +  R LL  F T++ I+ +  E LA +  + KKIA
Sbjct: 660 HTAKTKRTLKDEQEYIVSAISNVGNVIARNLLDYFQTIENIATADEEELAKVPKVGKKIA 719

Query: 601 CKIYN 605
            +I  
Sbjct: 720 KRIRR 724


>gi|145593768|ref|YP_001158065.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
 gi|190359283|sp|A4X487|DNLJ_SALTO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145303105|gb|ABP53687.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
          Length = 711

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L + F +V+ I ++  E L++++G+   IA  +   F
Sbjct: 546 SIRHVGPTAAQALARHFRSVEAIDQAGEEELSAVDGVGPTIAASVREWF 594


>gi|260887264|ref|ZP_05898527.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|330838979|ref|YP_004413559.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|260863326|gb|EEX77826.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
 gi|329746743|gb|AEC00100.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
          Length = 669

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I GIG      L+Q F T++ +  +S E + ++  + +     I ++F    +
Sbjct: 516 GIPGIGKAAAAALMQHFKTLEALENASDEAILAVRDMGETSVAAIRSYFQNEGN 569


>gi|320173862|gb|EFW49042.1| DNA ligase [Shigella dysenteriae CDC 74-1112]
          Length = 671

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT+K +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLKALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|319789848|ref|YP_004151481.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
 gi|317114350|gb|ADU96840.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
          Length = 723

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    +LL + F  ++ +  +    LASI GI    A  I N F    +
Sbjct: 549 GIRHVGEKTAQLLAKRFKNIEELMNADFTELASIPGIGPITATSIQNFFKAEQN 602


>gi|303234054|ref|ZP_07320703.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4]
 gi|302494979|gb|EFL54736.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4]
          Length = 662

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  IG      L Q + +   +  +  E L  IE I   IA +I   FH  T
Sbjct: 511 GIPEIGEKTSFELAQKYKSFDNLREAKFEELIQIEDIGNVIAEEIVEFFHDET 563


>gi|169824266|ref|YP_001691877.1| NAD-dependent DNA ligase LigA [Finegoldia magna ATCC 29328]
 gi|254781333|sp|B0RZW0|DNLJ_FINM2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167831071|dbj|BAG07987.1| NAD-dependent DNA ligase [Finegoldia magna ATCC 29328]
          Length = 662

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  IG      L Q + +   +  +  E L  IE I   IA +I   FH  T
Sbjct: 511 GIPEIGEKTSFELAQKYKSFDNLREAKFEELIQIEDIGNVIAEEIVEFFHDET 563


>gi|15791152|ref|NP_280976.1| Hef nuclease [Halobacterium sp. NRC-1]
 gi|169236908|ref|YP_001690108.1| Hef nuclease [Halobacterium salinarum R1]
 gi|10581766|gb|AAG20456.1| ATP-dependent RNA helicase homolog eIF-4A [Halobacterium sp. NRC-1]
 gi|167727974|emb|CAP14762.1| nuclease domain protein / probable ATP-dependent helicase
           [Halobacterium salinarum R1]
          Length = 784

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            I  +GP+  R LL +FG+V+ +  +S + L + +G+    A +I
Sbjct: 729 SITDVGPVTARSLLDTFGSVEAVMTASEDELTAADGVGAVTAERI 773


>gi|261414540|ref|YP_003248223.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261370996|gb|ACX73741.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326001|gb|ADL25202.1| DNA ligase (NAD+) [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 715

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   ++R  +     L  I  +G    R + + F T++ I  ++ E L ++  + ++I 
Sbjct: 509 AIQASKQRSLENLLHGL-GIRFVGRTSARNIAKHFRTLEKIRTATVEELQNVTDVGERIG 567

Query: 601 CKIYNHFH 608
             +Y  FH
Sbjct: 568 KSVYEFFH 575


>gi|261366975|ref|ZP_05979858.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
 gi|282571093|gb|EFB76628.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
          Length = 661

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  IG     LL + FG+++ I  +  E +  ++G    +A  +   F K  + 
Sbjct: 509 GIRNIGDKAAALLAEHFGSMEAIRSAGVEQMCEVDGFGAVMAQSVREFFDKEGTS 563


>gi|313125011|ref|YP_004035275.1| ercc4-like helicase [Halogeometricum borinquense DSM 11551]
 gi|312291376|gb|ADQ65836.1| ERCC4-like helicase [Halogeometricum borinquense DSM 11551]
          Length = 843

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           I  IGP+  R LL+ FGTV+ +  +  E L  + GI    A +I +
Sbjct: 791 IADIGPVTARSLLEEFGTVEAVMTAREEDLLEVSGIGSVTAERIRD 836


>gi|295394422|ref|ZP_06804646.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972774|gb|EFG48625.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 740

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   R +   F ++  +  ++ E L  +EG+ + IA  + + F + 
Sbjct: 581 SIRHVGPTAARDIAAHFRSMDAVRNATVEDLLEVEGVGETIAQSVVDWFAEE 632


>gi|227542668|ref|ZP_03972717.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181551|gb|EEI62523.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 679

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L + FG++  I +++ E LA+ EG+   IA  I + F
Sbjct: 520 SIRHVGPTAARALAREFGSMDAIRKATEEELAATEGVGGVIAASIVDWF 568


>gi|227488027|ref|ZP_03918343.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091889|gb|EEI27201.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 679

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L + FG++  I +++ E LA+ EG+   IA  I + F
Sbjct: 520 SIRHVGPTAARALAREFGSMDAIRKATEEELAATEGVGGVIAASIVDWF 568


>gi|78223924|ref|YP_385671.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
 gi|123756373|sp|Q39S28|DNLJ_GEOMG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78195179|gb|ABB32946.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
          Length = 671

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K+R+ + +     I  +G    +LL  +FG++  ++R++   L SI  I  ++A  I   
Sbjct: 506 KKRELSRFIFALGIRHVGEHTAKLLATAFGSIDNLARATEAELLSIREIGPQVAQSITTF 565

Query: 607 FHKNTS 612
           FH   +
Sbjct: 566 FHNEGN 571


>gi|319941620|ref|ZP_08015944.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
 gi|319804850|gb|EFW01704.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
          Length = 745

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FGT+  I  +S E L  +  + + +A  IY  F +
Sbjct: 588 VGEATALGLANHFGTLSAIENASMEALTGVPDVGEVVAESIYAFFRE 634


>gi|108798849|ref|YP_639046.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. MCS]
 gi|119867964|ref|YP_937916.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. KMS]
 gi|126434449|ref|YP_001070140.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. JLS]
 gi|123369452|sp|Q1BAU4|DNLJ_MYCSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216212|sp|A3PXM2|DNLJ_MYCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216213|sp|A1UE68|DNLJ_MYCSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|108769268|gb|ABG07990.1| DNA ligase, NAD-dependent [Mycobacterium sp. MCS]
 gi|119694053|gb|ABL91126.1| DNA ligase, NAD-dependent [Mycobacterium sp. KMS]
 gi|126234249|gb|ABN97649.1| DNA ligase, NAD-dependent [Mycobacterium sp. JLS]
          Length = 701

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I  +S + LA++EG+   IA  +   F
Sbjct: 542 SIRHVGPTAARALATEFGSLDAIIEASEDQLAAVEGVGPTIAAAVKEWF 590


>gi|302380539|ref|ZP_07269004.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3]
 gi|302311482|gb|EFK93498.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3]
          Length = 662

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  IG      L Q + +   +  +  E L  IE I   IA +I   FH  T
Sbjct: 511 GIPEIGEKTSFELAQKYKSFDNLREAKFEELIQIEDIGNVIAEEIVEFFHDET 563


>gi|311744048|ref|ZP_07717854.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
 gi|311313178|gb|EFQ83089.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
          Length = 782

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA    L        I  +GP+  R L Q FG+V+ I  +  + LA ++G+   IA  + 
Sbjct: 606 KARTKELWRFLVALSIRHVGPVAARALAQHFGSVRAIEAAGEDELAVVDGVGPTIAGSVK 665

Query: 605 NHF 607
           +  
Sbjct: 666 DWL 668


>gi|315230780|ref|YP_004071216.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
 gi|315183808|gb|ADT83993.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
          Length = 770

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 29/109 (26%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK  +     E     + +AL L  R       QRL                       
Sbjct: 681 IAKREQEERKKEVAVRSEKKALTLADR-------QRL----------------------I 711

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++ +  +     + LL+ FG+V+ +  +    L  +EGI +KIA +I  
Sbjct: 712 VEGLPYVSATLAKRLLRHFGSVERVFTAKENELMEVEGIGEKIAREIRR 760


>gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032]
 gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032]
          Length = 672

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   FGT++ +  +S + L  +  +   +A  ++N F + ++  
Sbjct: 520 VGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEEESNRA 571


>gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894]
 gi|166215403|sp|A7MKW4|DNLJ_ENTS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894]
          Length = 672

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   FGT++ +  +S + L  +  +   +A  ++N F + ++  
Sbjct: 520 VGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEEESNRA 571


>gi|229542656|ref|ZP_04431716.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
 gi|229327076|gb|EEN92751.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
          Length = 668

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +K +    L    I  +G    ++L   F T++ +S+++ E L +I  I +K+A  I  +
Sbjct: 499 KKNSLEKLLFGLGIRHVGAKAAKILAAHFETMERLSKATREELEAIPDIGEKMADSIAAY 558

Query: 607 FHKNTS 612
           F    +
Sbjct: 559 FENEEA 564


>gi|260892973|ref|YP_003239070.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
 gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
          Length = 672

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    +LL + FG++  +++++ E L  I  I  KIA  +   F +
Sbjct: 518 GIRHVGERAAKLLAEHFGSIDRLAQATEEELTEIPEIGPKIAASVRAFFAE 568


>gi|261340751|ref|ZP_05968609.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
 gi|288317173|gb|EFC56111.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
          Length = 671

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ + ++S + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEKASIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|254435383|ref|ZP_05048890.1| hypothetical protein NOC27_2446 [Nitrosococcus oceani AFC27]
 gi|207088494|gb|EDZ65766.1| hypothetical protein NOC27_2446 [Nitrosococcus oceani AFC27]
          Length = 105

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 21/86 (24%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQK----RIKSY----------MHSNNHTHRITHMISQIN 56
          G+Y  L+    V+YVGKA +L+     RI SY           +    +     ++  + 
Sbjct: 18 GIYAFLNEDSEVIYVGKA-SLRNSLGARISSYCGYGADRECRFYGEWRSPPRYVLVVAVP 76

Query: 57 NIRFTVTCTEVEALLLEANMIKRLKP 82
          +       T  EA  LE  +I+ L+P
Sbjct: 77 D------ETRFEAPALEEYLIRELQP 96


>gi|322418721|ref|YP_004197944.1| NAD-dependent DNA ligase [Geobacter sp. M18]
 gi|320125108|gb|ADW12668.1| DNA ligase, NAD-dependent [Geobacter sp. M18]
          Length = 668

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 28/50 (56%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    +LL  +FG+++ ++++S E L SI  +  ++A  I + F    +
Sbjct: 522 VGEHTAKLLAGAFGSIENLAKASEEELTSIREVGPQVAASIVDFFKNEEN 571


>gi|220912112|ref|YP_002487421.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
 gi|254778146|sp|B8HFJ3|DNLJ1_ARTCA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|219858990|gb|ACL39332.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
          Length = 770

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   R L Q+FGT+  I  +S E LA ++G+   IA  +   F ++
Sbjct: 583 SIRHVGPRASRALAQAFGTMDGIRAASEEELAHVDGVGPTIAAALKEWFAED 634


>gi|284166979|ref|YP_003405258.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284016634|gb|ADB62585.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 820

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            I  IGP+  R LL+ FGTV+ +  +S E L   +G+    A +I  
Sbjct: 766 SIAEIGPVTARSLLEEFGTVEAVMIASEEELQDADGVGAVTAERIRE 812


>gi|294786747|ref|ZP_06752001.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305]
 gi|315226368|ref|ZP_07868156.1| DNA ligase [Parascardovia denticolens DSM 10105]
 gi|294485580|gb|EFG33214.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305]
 gi|315120500|gb|EFT83632.1| DNA ligase [Parascardovia denticolens DSM 10105]
          Length = 868

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    RL+ + F T+  IS++S E L SI+ I  +IA  +Y  F +    +
Sbjct: 680 SIRHVGAPTARLIAKHFKTLTAISQASEEELTSIDAIGDEIAKSVYQWFREAQDPS 735


>gi|297191909|ref|ZP_06909307.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721112|gb|EDY65020.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 736

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP+    L + F ++  I +++ E LA+++G+   IA  +   F ++
Sbjct: 568 SIRHVGPVAAEALAREFRSIDRIEQATEEELAAVDGVGPTIAAALKQWFEED 619


>gi|302874256|ref|YP_003842889.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B]
 gi|307689480|ref|ZP_07631926.1| NAD-dependent DNA ligase LigA [Clostridium cellulovorans 743B]
 gi|302577113|gb|ADL51125.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B]
          Length = 665

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    + L ++  +++ I +++ E L +IE I + +A  I   F
Sbjct: 514 GIPNVGKKTAKDLCKNLKSLEGIKKATYEDLLAIEDIGEIVAKCIIEFF 562


>gi|323705454|ref|ZP_08117029.1| DNA protecting protein DprA [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535356|gb|EGB25132.1| DNA protecting protein DprA [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 362

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI-----ACKI 603
           R K  Y  L  ING+G    + L+  FG  + + +SS E +  +    + +     A KI
Sbjct: 3   RNKVFYVWLSSINGVGAKTFKKLVDYFGNAENVYKSSLEDIKQVVNNGRVLNSIIEAKKI 62

Query: 604 --YNH---FHKNT 611
             Y +    HK  
Sbjct: 63  EPYKYAERLHKEE 75


>gi|325479535|gb|EGC82631.1| DNA ligase (NAD+) [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 669

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    R L   F +   + ++  E L  +E I +  A  I  +F+
Sbjct: 510 GIPNVGERTSRDLANKFKSFDRLRQAKEEELVDVEDIGEITAQNIIEYFN 559


>gi|283832193|ref|ZP_06351934.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
 gi|291071830|gb|EFE09939.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
          Length = 671

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT+  +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLDALEAASIEELQKVPDVGIVVATHVFNFFAEESN 569


>gi|303244918|ref|ZP_07331244.1| helicase domain protein [Methanothermococcus okinawensis IH1]
 gi|302484735|gb|EFL47673.1| helicase domain protein [Methanothermococcus okinawensis IH1]
          Length = 797

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
             R++  +  ++    +GPL    LL  FGT++ I  +  E L  +EGI + +A KI + 
Sbjct: 732 SLRERQRF-IVESFPDVGPLTAENLLMKFGTIENIVNAPEEELREVEGIGEIMAKKIKSV 790

Query: 607 F 607
            
Sbjct: 791 L 791


>gi|262203140|ref|YP_003274348.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
 gi|262086487|gb|ACY22455.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
          Length = 691

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I  +  E LA +EG+   +A  I++ F
Sbjct: 533 SIRHVGPTAARALATEFGSLNAIEDADVEQLAGVEGLGMTLAQSIHDWF 581


>gi|223937256|ref|ZP_03629162.1| DNA protecting protein DprA [bacterium Ellin514]
 gi|223894041|gb|EEF60496.1| DNA protecting protein DprA [bacterium Ellin514]
          Length = 105

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L+ I+ +GP+R R LL+ FG    I  +S + L  + GI ++ A  I N 
Sbjct: 9   ALNMIDHVGPVRVRQLLEQFGNAPAILSASKQQLMRVRGIGEETAECIANW 59


>gi|120403104|ref|YP_952933.1| NAD-dependent DNA ligase LigA [Mycobacterium vanbaalenii PYR-1]
 gi|166216216|sp|A1T6X7|DNLJ_MYCVP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119955922|gb|ABM12927.1| DNA ligase, NAD-dependent [Mycobacterium vanbaalenii PYR-1]
          Length = 707

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I  +S E LA++EG+   IA  + + F
Sbjct: 548 SIRHVGPTAARALATEFGSLDAIVAASEEELAAVEGVGPTIAAAVTDWF 596


>gi|239833258|ref|ZP_04681586.1| Hypothetical protein OINT_2000012 [Ochrobactrum intermedium LMG
           3301]
 gi|239821321|gb|EEQ92890.1| Hypothetical protein OINT_2000012 [Ochrobactrum intermedium LMG
           3301]
          Length = 194

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGK-AYNLQKRIKSY 38
             E +P+  GVY   DI  R +YVGK + N++ R+K +
Sbjct: 105 DLETVPQASGVYVFYDITDRPVYVGKSSKNVRNRVKDH 142


>gi|212218835|ref|YP_002305622.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
 gi|254781301|sp|B6J878|DNLJ_COXB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212013097|gb|ACJ20477.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
          Length = 673

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G    R L + F  + ++ ++S ETL  I  I   +A  I+
Sbjct: 508 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVVAENIH 567

Query: 605 NHFHK 609
             FH+
Sbjct: 568 AFFHQ 572


>gi|229085845|ref|ZP_04218071.1| hypothetical protein bcere0022_24490 [Bacillus cereus Rock3-44]
 gi|228697441|gb|EEL50200.1| hypothetical protein bcere0022_24490 [Bacillus cereus Rock3-44]
          Length = 239

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 22/103 (21%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G+Y + D    ++YVGKA++++ R+ ++ +S ++   I   +   N + + +  +     
Sbjct: 48  GIYLIKDYNDNIIYVGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS----- 99

Query: 71  LLEANMIK-----RLKPRFNILLRD-DKSFP-----YILITDK 102
           LL+ ++++     + KP FN   +D  K FP     YI  T+K
Sbjct: 100 LLKRSLLQITYMIKYKPVFN---KDVQKEFPELYTQYIKQTNK 139


>gi|165923886|ref|ZP_02219718.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
 gi|165916671|gb|EDR35275.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
          Length = 670

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G    R L + F  + ++ ++S ETL  I  I   +A  I+
Sbjct: 505 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVVAENIH 564

Query: 605 NHFHK 609
             FH+
Sbjct: 565 AFFHQ 569


>gi|153207803|ref|ZP_01946403.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
 gi|120576355|gb|EAX32979.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
          Length = 670

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G    R L + F  + ++ ++S ETL  I  I   +A  I+
Sbjct: 505 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVVAENIH 564

Query: 605 NHFHK 609
             FH+
Sbjct: 565 AFFHQ 569


>gi|333016518|gb|EGK35849.1| DNA ligase, NAD-dependent [Shigella flexneri K-304]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|333001543|gb|EGK21111.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6]
 gi|333002206|gb|EGK21770.1| DNA ligase, NAD-dependent [Shigella flexneri K-272]
 gi|333016032|gb|EGK35364.1| DNA ligase, NAD-dependent [Shigella flexneri K-227]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|332766219|gb|EGJ96429.1| DNA ligase, NAD-dependent [Shigella flexneri 2930-71]
          Length = 647

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 496 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 545


>gi|332755049|gb|EGJ85414.1| DNA ligase, NAD-dependent [Shigella flexneri 4343-70]
          Length = 421

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 270 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 319


>gi|332092973|gb|EGI98039.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|332089820|gb|EGI94921.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|332088205|gb|EGI93327.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|330912204|gb|EGH40714.1| DNA ligase [Escherichia coli AA86]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|325496534|gb|EGC94393.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|324009590|gb|EGB78809.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|323967844|gb|EGB63256.1| DNA ligase [Escherichia coli M863]
 gi|327252066|gb|EGE63738.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|323188282|gb|EFZ73575.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|323170330|gb|EFZ55983.1| DNA ligase, NAD-dependent [Escherichia coli LT-68]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|320196260|gb|EFW70884.1| DNA ligase [Escherichia coli WV_060327]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|320185101|gb|EFW59881.1| DNA ligase [Shigella flexneri CDC 796-83]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|320180401|gb|EFW55332.1| DNA ligase [Shigella boydii ATCC 9905]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|331673883|ref|ZP_08374646.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
 gi|331069156|gb|EGI40548.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|331663971|ref|ZP_08364881.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
 gi|331059770|gb|EGI31747.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|331648073|ref|ZP_08349163.1| DNA ligase, NAD-dependent [Escherichia coli M605]
 gi|331042933|gb|EGI15073.1| DNA ligase, NAD-dependent [Escherichia coli M605]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|301648064|ref|ZP_07247828.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
 gi|307139053|ref|ZP_07498409.1| NAD-dependent DNA ligase LigA [Escherichia coli H736]
 gi|331643032|ref|ZP_08344167.1| DNA ligase, NAD-dependent [Escherichia coli H736]
 gi|301073835|gb|EFK88641.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
 gi|331039830|gb|EGI12050.1| DNA ligase, NAD-dependent [Escherichia coli H736]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|300940348|ref|ZP_07154941.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
 gi|300454839|gb|EFK18332.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|300923365|ref|ZP_07139409.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
 gi|300420362|gb|EFK03673.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|301022290|ref|ZP_07186186.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
 gi|300397609|gb|EFJ81147.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|300897228|ref|ZP_07115672.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
 gi|300358986|gb|EFJ74856.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|293410811|ref|ZP_06654387.1| DNA ligase [Escherichia coli B354]
 gi|291471279|gb|EFF13763.1| DNA ligase [Escherichia coli B354]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|293415682|ref|ZP_06658325.1| DNA ligase [Escherichia coli B185]
 gi|291433330|gb|EFF06309.1| DNA ligase [Escherichia coli B185]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|281179485|dbj|BAI55815.1| DNA ligase [Escherichia coli SE15]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|209764254|gb|ACI80439.1| DNA ligase [Escherichia coli]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|218705919|ref|YP_002413438.1| NAD-dependent DNA ligase LigA [Escherichia coli UMN026]
 gi|293405854|ref|ZP_06649846.1| DNA ligase [Escherichia coli FVEC1412]
 gi|298381604|ref|ZP_06991203.1| DNA ligase [Escherichia coli FVEC1302]
 gi|254781326|sp|B7N602|DNLJ_ECOLU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218433016|emb|CAR13911.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026]
 gi|284922366|emb|CBG35453.1| DNA ligase [Escherichia coli 042]
 gi|291428062|gb|EFF01089.1| DNA ligase [Escherichia coli FVEC1412]
 gi|298279046|gb|EFI20560.1| DNA ligase [Escherichia coli FVEC1302]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|218690549|ref|YP_002398761.1| NAD-dependent DNA ligase LigA [Escherichia coli ED1a]
 gi|254781322|sp|B7MY64|DNLJ_ECO81 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218428113|emb|CAR09030.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|218700877|ref|YP_002408506.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI39]
 gi|254781321|sp|B7NPU7|DNLJ_ECO7I RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218370863|emb|CAR18680.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|218548148|ref|YP_002381939.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ATCC 35469]
 gi|331684067|ref|ZP_08384663.1| DNA ligase, NAD-dependent [Escherichia coli H299]
 gi|254781331|sp|B7LL73|DNLJ_ESCF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218355689|emb|CAQ88301.1| DNA ligase, NAD(+)-dependent [Escherichia fergusonii ATCC 35469]
 gi|315298233|gb|EFU57493.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3]
 gi|331079019|gb|EGI50221.1| DNA ligase, NAD-dependent [Escherichia coli H299]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|215487666|ref|YP_002330097.1| NAD-dependent DNA ligase LigA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967700|ref|ZP_07781915.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
 gi|254781317|sp|B7UGB2|DNLJ_ECO27 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|215265738|emb|CAS10145.1| DNA ligase, NAD(+)-dependent [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312287897|gb|EFR15802.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|195938757|ref|ZP_03084139.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 556

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 405 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 454


>gi|91211748|ref|YP_541734.1| NAD-dependent DNA ligase LigA [Escherichia coli UTI89]
 gi|117624619|ref|YP_853532.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
 gi|218559359|ref|YP_002392272.1| NAD-dependent DNA ligase LigA [Escherichia coli S88]
 gi|237704934|ref|ZP_04535415.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
 gi|331658566|ref|ZP_08359510.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
 gi|123084405|sp|Q1R8W1|DNLJ_ECOUT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215402|sp|A1ADS8|DNLJ_ECOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781318|sp|B7MHR5|DNLJ_ECO45 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91073322|gb|ABE08203.1| DNA ligase [Escherichia coli UTI89]
 gi|115513743|gb|ABJ01818.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
 gi|218366128|emb|CAR03873.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88]
 gi|226901300|gb|EEH87559.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
 gi|294491726|gb|ADE90482.1| DNA ligase, NAD-dependent [Escherichia coli IHE3034]
 gi|307626016|gb|ADN70320.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146]
 gi|315288164|gb|EFU47564.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3]
 gi|323949546|gb|EGB45434.1| DNA ligase [Escherichia coli H252]
 gi|323955668|gb|EGB51426.1| DNA ligase [Escherichia coli H263]
 gi|331054231|gb|EGI26258.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|146615|gb|AAA24071.1| lig peptide [Escherichia coli]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|82544871|ref|YP_408818.1| NAD-dependent DNA ligase LigA [Shigella boydii Sb227]
 gi|123741957|sp|Q31Y68|DNLJ_SHIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81246282|gb|ABB66990.1| DNA ligase [Shigella boydii Sb227]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|82777805|ref|YP_404154.1| NAD-dependent DNA ligase LigA [Shigella dysenteriae Sd197]
 gi|309784866|ref|ZP_07679499.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
 gi|123728534|sp|Q32DE2|DNLJ_SHIDS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|81241953|gb|ABB62663.1| DNA ligase [Shigella dysenteriae Sd197]
 gi|308927236|gb|EFP72710.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|24113756|ref|NP_708266.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 301]
 gi|30063805|ref|NP_837976.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 2457T]
 gi|110806352|ref|YP_689872.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5 str. 8401]
 gi|81723177|sp|Q83K81|DNLJ_SHIFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122366427|sp|Q0T298|DNLJ_SHIF8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24052834|gb|AAN43973.1| DNA ligase [Shigella flexneri 2a str. 301]
 gi|30042060|gb|AAP17786.1| DNA ligase [Shigella flexneri 2a str. 2457T]
 gi|110615900|gb|ABF04567.1| DNA ligase [Shigella flexneri 5 str. 8401]
 gi|281601828|gb|ADA74812.1| DNA ligase, NAD-dependent [Shigella flexneri 2002017]
 gi|313650866|gb|EFS15266.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T]
 gi|332755453|gb|EGJ85817.1| DNA ligase, NAD-dependent [Shigella flexneri K-671]
 gi|332756263|gb|EGJ86614.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71]
 gi|333002064|gb|EGK21630.1| DNA ligase, NAD-dependent [Shigella flexneri K-218]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|26248787|ref|NP_754827.1| NAD-dependent DNA ligase LigA [Escherichia coli CFT073]
 gi|170680446|ref|YP_001744602.1| NAD-dependent DNA ligase LigA [Escherichia coli SMS-3-5]
 gi|227887457|ref|ZP_04005262.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
 gi|300981618|ref|ZP_07175608.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
 gi|301046300|ref|ZP_07193464.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
 gi|81475373|sp|Q8FFC1|DNLJ_ECOL6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781328|sp|B1LMK5|DNLJ_ECOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|26109193|gb|AAN81395.1|AE016764_77 DNA ligase [Escherichia coli CFT073]
 gi|170518164|gb|ACB16342.1| DNA ligase, NAD-dependent [Escherichia coli SMS-3-5]
 gi|227835807|gb|EEJ46273.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
 gi|300301715|gb|EFJ58100.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
 gi|300408962|gb|EFJ92500.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
 gi|307554453|gb|ADN47228.1| DNA ligase [Escherichia coli ABU 83972]
 gi|315293473|gb|EFU52825.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1]
 gi|323977408|gb|EGB72494.1| DNA ligase [Escherichia coli TW10509]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|15802944|ref|NP_288973.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 EDL933]
 gi|12516784|gb|AAG57530.1|AE005471_7 DNA ligase [Escherichia coli O157:H7 str. EDL933]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|15832537|ref|NP_311310.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai]
 gi|168768500|ref|ZP_02793507.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
 gi|168778374|ref|ZP_02803381.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
 gi|208813694|ref|ZP_03255023.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
 gi|208821178|ref|ZP_03261498.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
 gi|209399429|ref|YP_002271890.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
 gi|217326968|ref|ZP_03443051.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
 gi|254794365|ref|YP_003079202.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223146|ref|ZP_05937427.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259301|ref|ZP_05951834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283640|ref|YP_003500458.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
 gi|166215595|sp|Q8XBL5|DNLJ_ECO57 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781320|sp|B5YZV8|DNLJ_ECO5E RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13362753|dbj|BAB36706.1| DNA ligase [Escherichia coli O157:H7 str. Sakai]
 gi|189003243|gb|EDU72229.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
 gi|189362250|gb|EDU80669.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
 gi|208734971|gb|EDZ83658.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
 gi|208741301|gb|EDZ88983.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
 gi|209160829|gb|ACI38262.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
 gi|209764248|gb|ACI80436.1| DNA ligase [Escherichia coli]
 gi|209764250|gb|ACI80437.1| DNA ligase [Escherichia coli]
 gi|209764252|gb|ACI80438.1| DNA ligase [Escherichia coli]
 gi|209764256|gb|ACI80440.1| DNA ligase [Escherichia coli]
 gi|217319335|gb|EEC27760.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
 gi|254593765|gb|ACT73126.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763513|gb|ADD57474.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
 gi|320188751|gb|EFW63410.1| DNA ligase [Escherichia coli O157:H7 str. EC1212]
 gi|320640925|gb|EFX10409.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101]
 gi|320646206|gb|EFX15133.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str.
           493-89]
 gi|320651712|gb|EFX20092.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H
           2687]
 gi|320657097|gb|EFX24906.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320662857|gb|EFX30185.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667743|gb|EFX34654.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340214|gb|EGD64018.1| DNA ligase [Escherichia coli O157:H7 str. 1125]
 gi|326344216|gb|EGD67977.1| DNA ligase [Escherichia coli O157:H7 str. 1044]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|110642595|ref|YP_670325.1| NAD-dependent DNA ligase LigA [Escherichia coli 536]
 gi|191174600|ref|ZP_03036093.1| DNA ligase, NAD-dependent [Escherichia coli F11]
 gi|300997757|ref|ZP_07181842.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
 gi|306814500|ref|ZP_07448662.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
 gi|122958158|sp|Q0TF55|DNLJ_ECOL5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110344187|gb|ABG70424.1| DNA ligase [Escherichia coli 536]
 gi|190905126|gb|EDV64772.1| DNA ligase, NAD-dependent [Escherichia coli F11]
 gi|222034142|emb|CAP76883.1| DNA ligase [Escherichia coli LF82]
 gi|300304141|gb|EFJ58661.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
 gi|305851894|gb|EFM52346.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
 gi|312947007|gb|ADR27834.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324011127|gb|EGB80346.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|157161876|ref|YP_001459194.1| NAD-dependent DNA ligase LigA [Escherichia coli HS]
 gi|253772690|ref|YP_003035521.1| NAD-dependent DNA ligase LigA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162394|ref|YP_003045502.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
 gi|297517308|ref|ZP_06935694.1| NAD-dependent DNA ligase LigA [Escherichia coli OP50]
 gi|300928569|ref|ZP_07144093.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
 gi|190359254|sp|A8A2Q7|DNLJ_ECOHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157067556|gb|ABV06811.1| DNA ligase, NAD-dependent [Escherichia coli HS]
 gi|242378018|emb|CAQ32789.1| DNA ligase [Escherichia coli BL21(DE3)]
 gi|253323734|gb|ACT28336.1| DNA ligase, NAD-dependent [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974295|gb|ACT39966.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
 gi|253978462|gb|ACT44132.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)]
 gi|300463441|gb|EFK26934.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
 gi|323961212|gb|EGB56824.1| DNA ligase [Escherichia coli H489]
 gi|323970900|gb|EGB66151.1| DNA ligase [Escherichia coli TA007]
 gi|332344237|gb|AEE57571.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|157156100|ref|YP_001463741.1| NAD-dependent DNA ligase LigA [Escherichia coli E24377A]
 gi|193066723|ref|ZP_03047750.1| DNA ligase, NAD-dependent [Escherichia coli E22]
 gi|194430461|ref|ZP_03062941.1| DNA ligase, NAD-dependent [Escherichia coli B171]
 gi|209919893|ref|YP_002293977.1| NAD-dependent DNA ligase LigA [Escherichia coli SE11]
 gi|218554944|ref|YP_002387857.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI1]
 gi|218696047|ref|YP_002403714.1| NAD-dependent DNA ligase LigA [Escherichia coli 55989]
 gi|256017438|ref|ZP_05431303.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
 gi|260845052|ref|YP_003222830.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
 gi|260856513|ref|YP_003230404.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|260869108|ref|YP_003235510.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
 gi|293446772|ref|ZP_06663194.1| DNA ligase [Escherichia coli B088]
 gi|300817349|ref|ZP_07097566.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
 gi|300820921|ref|ZP_07101071.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
 gi|300903139|ref|ZP_07121073.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
 gi|300921341|ref|ZP_07137704.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
 gi|301306250|ref|ZP_07212323.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
 gi|301328910|ref|ZP_07221944.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
 gi|307312589|ref|ZP_07592222.1| DNA ligase, NAD-dependent [Escherichia coli W]
 gi|309794543|ref|ZP_07688966.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
 gi|331669152|ref|ZP_08370000.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
 gi|331678399|ref|ZP_08379074.1| DNA ligase, NAD-dependent [Escherichia coli H591]
 gi|332278439|ref|ZP_08390852.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
 gi|190359253|sp|A7ZPL2|DNLJ_ECO24 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781319|sp|B7LCF6|DNLJ_ECO55 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781323|sp|B7M6S1|DNLJ_ECO8A RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781327|sp|B6I4Y8|DNLJ_ECOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157078130|gb|ABV17838.1| DNA ligase, NAD-dependent [Escherichia coli E24377A]
 gi|192925627|gb|EDV80294.1| DNA ligase, NAD-dependent [Escherichia coli E22]
 gi|194411494|gb|EDX27836.1| DNA ligase, NAD-dependent [Escherichia coli B171]
 gi|209913152|dbj|BAG78226.1| DNA ligase [Escherichia coli SE11]
 gi|218352779|emb|CAU98567.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989]
 gi|218361712|emb|CAQ99309.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1]
 gi|257755162|dbj|BAI26664.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
           11368]
 gi|257760199|dbj|BAI31696.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
           12009]
 gi|257765464|dbj|BAI36959.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
           11128]
 gi|291323602|gb|EFE63030.1| DNA ligase [Escherichia coli B088]
 gi|300404835|gb|EFJ88373.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
 gi|300411729|gb|EFJ95039.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
 gi|300526674|gb|EFK47743.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
 gi|300529975|gb|EFK51037.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
 gi|300838493|gb|EFK66253.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
 gi|300844712|gb|EFK72472.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
 gi|306907512|gb|EFN38016.1| DNA ligase, NAD-dependent [Escherichia coli W]
 gi|308121999|gb|EFO59261.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
 gi|315061736|gb|ADT76063.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
 gi|315256427|gb|EFU36395.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1]
 gi|320199974|gb|EFW74563.1| DNA ligase [Escherichia coli EC4100B]
 gi|323156318|gb|EFZ42476.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14]
 gi|323159458|gb|EFZ45441.1| DNA ligase, NAD-dependent [Escherichia coli E128010]
 gi|323177463|gb|EFZ63051.1| DNA ligase, NAD-dependent [Escherichia coli 1180]
 gi|323184284|gb|EFZ69660.1| DNA ligase, NAD-dependent [Escherichia coli 1357]
 gi|323377683|gb|ADX49951.1| DNA ligase, NAD-dependent [Escherichia coli KO11]
 gi|323944634|gb|EGB40701.1| DNA ligase [Escherichia coli H120]
 gi|324020175|gb|EGB89394.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3]
 gi|324118125|gb|EGC12023.1| DNA ligase [Escherichia coli E1167]
 gi|331064346|gb|EGI36257.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
 gi|331074859|gb|EGI46179.1| DNA ligase, NAD-dependent [Escherichia coli H591]
 gi|332100791|gb|EGJ04137.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|16130337|ref|NP_416906.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109225|ref|AP_003005.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           W3110]
 gi|170019306|ref|YP_001724260.1| NAD-dependent DNA ligase LigA [Escherichia coli ATCC 8739]
 gi|170082020|ref|YP_001731340.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188495579|ref|ZP_03002849.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
 gi|238901574|ref|YP_002927370.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|256021895|ref|ZP_05435760.1| NAD-dependent DNA ligase LigA [Escherichia sp. 4_1_40B]
 gi|300951893|ref|ZP_07165701.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
 gi|300957240|ref|ZP_07169472.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
 gi|301023745|ref|ZP_07187485.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
 gi|312973347|ref|ZP_07787519.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
 gi|2506362|sp|P15042|DNLJ_ECOLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781324|sp|B1XA82|DNLJ_ECODH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781325|sp|B1IX60|DNLJ_ECOLC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149242732|pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna
           Ligase Bound To Nicked Dna-Adenylate
 gi|146613|gb|AAA24070.1| DNA ligase (EC 6.5.1.2) [Escherichia coli]
 gi|1788750|gb|AAC75464.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675396|dbj|BAA16282.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr.
           W3110]
 gi|169754234|gb|ACA76933.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 8739]
 gi|169889855|gb|ACB03562.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188490778|gb|EDU65881.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
 gi|238860822|gb|ACR62820.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
 gi|260448502|gb|ACX38924.1| DNA ligase, NAD-dependent [Escherichia coli DH1]
 gi|299880716|gb|EFI88927.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
 gi|300315993|gb|EFJ65777.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
 gi|300448878|gb|EFK12498.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
 gi|309702699|emb|CBJ02028.1| DNA ligase [Escherichia coli ETEC H10407]
 gi|310331942|gb|EFP99177.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
 gi|315137042|dbj|BAJ44201.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1]
 gi|315615662|gb|EFU96294.1| DNA ligase, NAD-dependent [Escherichia coli 3431]
 gi|323936436|gb|EGB32725.1| DNA ligase [Escherichia coli E1520]
 gi|323941344|gb|EGB37529.1| DNA ligase [Escherichia coli E482]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|239994967|ref|ZP_04715491.1| DNA ligase, NAD-dependent [Alteromonas macleodii ATCC 27126]
          Length = 593

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T++ I  +S E L  ++ + + +A  I+N F+++
Sbjct: 441 VGEATAANLAAHFETLEAIREASLEALVEVQDVGEVVATHIFNFFNES 488


>gi|149174899|ref|ZP_01853523.1| DNA processing chain A [Planctomyces maris DSM 8797]
 gi|148846236|gb|EDL60575.1| DNA processing chain A [Planctomyces maris DSM 8797]
          Length = 376

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ I G+GP  +R LL  FG+   I  +  + L +++GI  K+A  I
Sbjct: 17  QLNLIRGVGPRIRRTLLDQFGSPAQILNAPRQELLNVQGIGTKLADAI 64


>gi|152981161|ref|YP_001353755.1| DNA ligase (polydeoxyribonucleotide synthase) [Janthinobacterium
           sp. Marseille]
 gi|166215814|sp|A6SZQ8|DNLJ_JANMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151281238|gb|ABR89648.1| DNA ligase (Polydeoxyribonucleotide synthase) [Janthinobacterium
           sp. Marseille]
          Length = 692

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L + FG ++ + ++S E L  +  I   +A  I 
Sbjct: 524 KSKSTTLARFIYALGIRHVGEATAKELARHFGNLEALLQASEEQLLEVADIGPVVAQSIR 583

Query: 605 NHF 607
           +  
Sbjct: 584 SFL 586


>gi|297571016|ref|YP_003696790.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
 gi|296931363|gb|ADH92171.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
          Length = 843

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 17/78 (21%)

Query: 550 KKAAYSPLDEING-----------------IGPLRKRLLLQSFGTVKMISRSSPETLASI 592
            K     LDE+ G                 +GP+  + L  +FG++  +  +S E ++++
Sbjct: 660 SKTLLKILDELEGAKHKDLWRKLVALNIRHVGPVASQALADTFGSLDAMREASLEDISAV 719

Query: 593 EGISKKIACKIYNHFHKN 610
           EG+   IA      F + 
Sbjct: 720 EGVGPIIASSFLAWFGEE 737


>gi|258514074|ref|YP_003190296.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
 gi|257777779|gb|ACV61673.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
          Length = 677

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 548 RRKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + KKA+   L     I  +G    + L + FG+++ +  +  E L  I  I  KIA  I 
Sbjct: 499 QSKKASLGRLIFALGIRHVGERAAKTLARHFGSLQNLMAAGLEELVGIPEIGTKIAGSII 558

Query: 605 NHFHKNTS 612
             F +  +
Sbjct: 559 TFFEQEQN 566


>gi|121533514|ref|ZP_01665342.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
 gi|121308073|gb|EAX48987.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
          Length = 673

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L + FG++  + R++ E L ++E I  KIA  + N+F
Sbjct: 525 VGAKAAGTLARHFGSIHALERATVEELMALEEIGPKIAESVANYF 569


>gi|134045229|ref|YP_001096715.1| Hef nuclease [Methanococcus maripaludis C5]
 gi|132662854|gb|ABO34500.1| ERCC4 domain protein [Methanococcus maripaludis C5]
          Length = 749

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K R+K      + +  +GP+    LL +F +V+ I  ++ E L ++EG+    A KI  
Sbjct: 686 KERQKFLV---EGLPDVGPVMAENLLDNFNSVENIFTATEEELKAVEGMGPVTAKKIKE 741


>gi|222152820|ref|YP_002561997.1| NAD-dependent DNA ligase LigA [Streptococcus uberis 0140J]
 gi|254781430|sp|B9DRS2|DNLJ_STRU0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222113633|emb|CAR41520.1| DNA ligase [Streptococcus uberis 0140J]
          Length = 652

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    RLLL++FG+V+ + ++  +++A I+G+   IA  I N+F K  +  
Sbjct: 502 GIRHVGAKASRLLLETFGSVENLMKADDQSIAQIDGLGHVIANSIKNYFAKEEAKQ 557



 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I G+GP     L    L     V  I + S ++L ++EGI +K A K+ +    + S++
Sbjct: 436 NIAGLGPAIVEKLFSAQLIH--DVADIYQLSLDSLLTLEGIKEKSAQKLLDAIQSSKSNS 493


>gi|313904335|ref|ZP_07837713.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6]
 gi|313470885|gb|EFR66209.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6]
          Length = 670

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   +K+      + L  I  +G    + L++ + +++ +S+++ E L  +  I    A
Sbjct: 501 AIDASKKQNPARLLTAL-GIRNVGSSTAKELMKHYASIRELSKATAEELVQLPDIGSTTA 559

Query: 601 CKIYNHFHKNTS 612
             I   F  + +
Sbjct: 560 GDIVEFFSDSEN 571


>gi|293391716|ref|ZP_06636050.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952250|gb|EFE02369.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 671

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T++ +  +  E L  +  + + +A +I+  +H+
Sbjct: 522 VGEATALNLANHFKTLEALQNADLEQLQQVPDVGEVVANRIFVFWHE 568


>gi|289178474|gb|ADC85720.1| NAD-dependent DNA ligase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 889

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +GP     L + F T+  ++ +S E L  I+GI  +IA  I 
Sbjct: 715 KAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADASAEELEQIDGIGAEIADSIA 774

Query: 605 NHFHK 609
             F +
Sbjct: 775 TFFEE 779


>gi|183601766|ref|ZP_02963136.1| LigA [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683704|ref|YP_002470087.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190736|ref|YP_002968130.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196142|ref|YP_002969697.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|254781258|sp|B8DU32|DNLJ_BIFA0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183219372|gb|EDT90013.1| LigA [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621354|gb|ACL29511.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249128|gb|ACS46068.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250696|gb|ACS47635.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793725|gb|ADG33260.1| LigA [Bifidobacterium animalis subsp. lactis V9]
          Length = 863

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +GP     L + F T+  ++ +S E L  I+GI  +IA  I 
Sbjct: 689 KAKHTDLSRVLVALSIRHVGPPTAFTLAKHFKTLDALADASAEELEQIDGIGAEIADSIA 748

Query: 605 NHFHK 609
             F +
Sbjct: 749 TFFEE 753


>gi|300783591|ref|YP_003763882.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
 gi|299793105|gb|ADJ43480.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
          Length = 726

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L + FG+++ I +++ E L++++G+   IA      F
Sbjct: 548 SIRHVGPTAAQALAREFGSIERIEQATEEELSAVDGVGPTIAHATQEWF 596


>gi|225181787|ref|ZP_03735225.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
 gi|225167561|gb|EEG76374.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
          Length = 667

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    RLL++ F +++ +  +S E L +++ +  KIA  +   F
Sbjct: 518 VGDRTARLLVEHFNSMEKLMAASAEELEAVDEVGPKIAQSVTEFF 562


>gi|88855225|ref|ZP_01129890.1| DNA ligase [marine actinobacterium PHSC20C1]
 gi|88815753|gb|EAR25610.1| DNA ligase [marine actinobacterium PHSC20C1]
          Length = 775

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R L   FG+++ I  +  E LA+++G+ + IA  +   F
Sbjct: 610 SIRHVGPVAARALADYFGSLEAIRTAKREELAAVDGVGQIIADSVIEWF 658


>gi|88703478|ref|ZP_01101194.1| DNA ligase [Congregibacter litoralis KT71]
 gi|88702192|gb|EAQ99295.1| DNA ligase [Congregibacter litoralis KT71]
          Length = 674

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +S +  + L  +  +   +A  ++  F  + +
Sbjct: 522 VGEATALALANHFGTLEALSGADLDDLLEVPDVGPVVAEHVHGFFRADAN 571


>gi|149173204|ref|ZP_01851835.1| DNA ligase [Planctomyces maris DSM 8797]
 gi|148848010|gb|EDL62342.1| DNA ligase [Planctomyces maris DSM 8797]
          Length = 671

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    R+L + FGT+  I++ S E LA+++ I   IA  +Y  FH +
Sbjct: 514 NIRHVGSSNARILEKQFGTIDEIAQQSVEELAAVDEIGPVIAESVYTFFHSD 565


>gi|297588239|ref|ZP_06946882.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516]
 gi|297573612|gb|EFH92333.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516]
          Length = 662

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  IG      L Q + +   +  +  + L  IE I   IA +I   FH  T
Sbjct: 511 GIPEIGEKTSFELAQKYKSFDNLREAKFDELIQIEDIGNVIAEEIVEFFHDET 563



 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+G+     ++LL+     +++ I     E L  +EG  +K +  + N   K+ +
Sbjct: 445 NIDGLSEKTLKVLLEKLNITSIEEIYDVKKEQLMQLEGFKEKKSQNLINAIEKSKN 500


>gi|295697355|ref|YP_003590593.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
 gi|295412957|gb|ADG07449.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
          Length = 677

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           ++  + L+       I  IG    R+L   F  +  +  +S E L  +  I  K+A  I 
Sbjct: 506 RSKQNSLERLLFGLGIRYIGEKASRVLAAHFKEMDALMEASSEELLKVPDIGAKMAQSIR 565

Query: 605 NHFHKNTS 612
            +F + ++
Sbjct: 566 VYFGQESA 573


>gi|76788861|ref|YP_327947.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis A/HAR-13]
 gi|123731251|sp|Q3KMM3|DNLJ_CHLTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76167391|gb|AAX50399.1| NAD-dependent DNA ligase [Chlamydia trachomatis A/HAR-13]
          Length = 663

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK A   L     I  +G      L   F T+  +  +S + L SIEGI  K+A  I   
Sbjct: 496 KKVALDRLLTALSIPFVGSSGAIALADHFVTLDKVIEASLDELMSIEGIGPKVAASIVAF 555

Query: 607 F--HKNTSH 613
           F  H+N   
Sbjct: 556 FSKHENREE 564


>gi|330995784|ref|ZP_08319681.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329574514|gb|EGG56079.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 669

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G +  + L + F ++  +S +S E +  I GI   IA  +  +F    +H
Sbjct: 518 VGEIAAKALARHFKSMDALSSASLEDMLQINGIGVVIAESVIRYFANEANH 568


>gi|161502427|ref|YP_001569539.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|190359281|sp|A9MIG0|DNLJ_SALAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160863774|gb|ABX20397.1| hypothetical protein SARI_00461 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 671

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAASIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|261493319|ref|ZP_05989845.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261310963|gb|EEY12140.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 685

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 25/47 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FG+++ I +++ E L  ++ + + +A +I + + +
Sbjct: 536 VGEATALNLANHFGSLEAIRQATFEQLKEVQDVGEVVANRIVSFWQE 582


>gi|261496584|ref|ZP_05992964.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307787|gb|EEY09110.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 685

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 25/47 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FG+++ I +++ E L  ++ + + +A +I + + +
Sbjct: 536 VGEATALNLANHFGSLEAIRQATFEQLKEVQDVGEVVANRIVSFWQE 582


>gi|260577534|ref|ZP_05845474.1| DNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258604338|gb|EEW17575.1| DNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 688

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L + F +V+ I+ +S E +A I+G+++ IA  I + F
Sbjct: 518 SIRHVGPTAAKALAKHFESVEDIASASVEEMAGIDGVAETIAESISDWF 566


>gi|254360665|ref|ZP_04976814.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
 gi|153091205|gb|EDN73210.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
          Length = 685

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 25/47 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FG+++ I +++ E L  ++ + + +A +I + + +
Sbjct: 536 VGEATALNLANHFGSLEAIRQATFEQLKEVQDVGEVVANRIVSFWQE 582


>gi|219850499|ref|YP_002464932.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
 gi|254781282|sp|B8GAC1|DNLJ_CHLAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219544758|gb|ACL26496.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
          Length = 681

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 14/77 (18%)

Query: 541 AITTHRKRRKKAAYSPLDE-ING-----IGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           AI   R+R       PLD  I G     +G +  + L+ S G++  I  +  E L  I G
Sbjct: 510 AIDAARQR-------PLDRLIVGLGIRYVGSVAAQALVNSLGSLDAIMNARQEELEQIPG 562

Query: 595 ISKKIACKIYNHF-HKN 610
           I   +A  I + F H  
Sbjct: 563 IGPVVAASIVDFFAHPE 579


>gi|289581750|ref|YP_003480216.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
 gi|289531303|gb|ADD05654.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
          Length = 699

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKIYNHF 607
            S L  I  +GP   R L + FGT + +  ++ +    L  ++ + + +A  I+  F
Sbjct: 532 LSAL-GIPHVGPTTARELAREFGTFEAVREAAEDDPAALEGVDDVGETVAETIHEFF 587


>gi|121594439|ref|YP_986335.1| DNA ligase [Acidovorax sp. JS42]
 gi|166215384|sp|A1W7N4|DNLJ_ACISJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120606519|gb|ABM42259.1| DNA ligase, NAD-dependent [Acidovorax sp. JS42]
          Length = 731

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L + FG +  I  +  E L  +  +   +A  I+
Sbjct: 556 KSKRTTLARFLFGLGIRHVGEATAKDLARHFGQLDAIMDAGVEQLLQVNDVGPVVAEAIH 615

Query: 605 NHF 607
             F
Sbjct: 616 TFF 618


>gi|159905661|ref|YP_001549323.1| Hef nuclease [Methanococcus maripaludis C6]
 gi|159887154|gb|ABX02091.1| ERCC4 domain protein [Methanococcus maripaludis C6]
          Length = 751

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K R+K      + +  +GP+    LL +F +V+ I  +S E L S++G+    A KI  
Sbjct: 688 KERQKFLV---EGLPDVGPVMAENLLDNFNSVENIFTASEEELKSVDGVGPITAKKIKE 743


>gi|157144662|ref|YP_001451981.1| NAD-dependent DNA ligase LigA [Citrobacter koseri ATCC BAA-895]
 gi|166215574|sp|A8ADI2|DNLJ_CITK8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157081867|gb|ABV11545.1| hypothetical protein CKO_00382 [Citrobacter koseri ATCC BAA-895]
          Length = 671

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|126296051|ref|XP_001367306.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 216

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +I G+G +   LLLQ F +++ +S +S + L  + G    +A K++  F
Sbjct: 166 QIPGVGKVMALLLLQEFPSIQKLSNASIQELERVVG--HTLAEKMHTFF 212


>gi|257095174|ref|YP_003168815.1| NAD-dependent DNA ligase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047698|gb|ACV36886.1| DNA ligase, NAD-dependent [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 675

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 541 AITTHRKRRKKAAYSPL-DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI   R +R   A       I  +G    R L + FG++  +  +  ++L  +  +   +
Sbjct: 498 AIE--RSKRTTLARFIFALGIRNVGEATARELARHFGSLDRLLAADEDSLRQVPDVGPTV 555

Query: 600 ACKIYNH 606
           A  I   
Sbjct: 556 AQSIRQF 562


>gi|260584784|ref|ZP_05852529.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
 gi|260157441|gb|EEW92512.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
          Length = 668

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI T ++   +   + L  I  +G    + L   F T++ + +++ E L +IEG+   IA
Sbjct: 493 AIETSKQNSLERLLTGL-GIRNVGSKAAKDLAMHFETMENLQKATVEELVAIEGLGLVIA 551

Query: 601 CKIYNHFHKNT 611
             +  +F++ T
Sbjct: 552 HSVLAYFNQET 562


>gi|146312580|ref|YP_001177654.1| NAD-dependent DNA ligase LigA [Enterobacter sp. 638]
 gi|190359255|sp|A4WD23|DNLJ_ENT38 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145319456|gb|ABP61603.1| DNA ligase, NAD-dependent [Enterobacter sp. 638]
          Length = 671

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ + +++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAHFGTLEQLEKATIDDLQKVPDVGIVVATHVFNFFAEESN 569


>gi|317125504|ref|YP_004099616.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
 gi|315589592|gb|ADU48889.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
          Length = 715

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L  +FG++  I R+S E LA  EG+ + IA  +   F
Sbjct: 559 SIRHVGPTAARALATTFGSMDAIRRASIEELAEAEGVGQIIAESVTAWF 607


>gi|313114130|ref|ZP_07799682.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623539|gb|EFQ06942.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 666

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG     LL + FGT++ +  +S E ++ I+G    +A  +   F K 
Sbjct: 512 GIRNIGDKAAALLAEHFGTLQAVREASAEQISEIDGFGGVMAQSVVEFFAKE 563


>gi|303241863|ref|ZP_07328358.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302590638|gb|EFL60391.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 344

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PLD + G+GP     L++ FG+ +K+I  ++ E LA +  + +++A  I
Sbjct: 275 PLDFLPGVGPKTIDKLIKHFGSEMKIIHEATFEELAHV--VKEEVATNI 321


>gi|21673094|ref|NP_661159.1| DprA/SMF protein, putative DNA processing factor [Chlorobium
           tepidum TLS]
 gi|21646166|gb|AAM71501.1| DprA/SMF protein, putative DNA processing factor [Chlorobium
           tepidum TLS]
          Length = 399

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++ GIGP R R LL  FG    +  +  + L  I GI +  A +
Sbjct: 37  QLPGIGPSRARALLNRFGATPALLEADYDALRQIPGIGETTARE 80


>gi|301633469|gb|ADK87023.1| DNA ligase (NAD(+)) [Mycoplasma pneumoniae FH]
          Length = 658

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G +  + L + F  +  +  +S ETL  +  +   +A  ++N FH + +
Sbjct: 507 GIKHVGQVLAKSLTKHFENIDALQSASMETLLELPDVGPTVAESLFNWFHNDNN 560


>gi|215918993|ref|NP_819574.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
 gi|218512010|sp|Q83DZ6|DNLJ_COXBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206583878|gb|AAO90088.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
          Length = 673

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G    R L + F  + ++ ++S ETL  I  I    A  I+
Sbjct: 508 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVAAENIH 567

Query: 605 NHFHKNTS 612
             FH+  +
Sbjct: 568 AFFHQKNN 575


>gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae M129]
 gi|2494169|sp|P78021|DNLJ_MYCPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|1674170|gb|AAB96127.1| DNA ligase [Mycoplasma pneumoniae M129]
          Length = 658

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G +  + L + F  +  +  +S ETL  +  +   +A  ++N FH + +
Sbjct: 507 GIKHVGQVLAKSLTKHFENIDALQSASMETLLELPDVGPTVAESLFNWFHNDNN 560


>gi|91775756|ref|YP_545512.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
 gi|123254532|sp|Q1H1G6|DNLJ_METFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91709743|gb|ABE49671.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
          Length = 693

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 547 KRRKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           ++ K+A  +       I  +G    + L + FG +  +  +  +TL  +  +   +A  I
Sbjct: 525 QKSKQATLNRFIYALGIRNVGEATAKDLARHFGRLDALQAADVDTLQQVPDVGPVVARSI 584

Query: 604 YNHFHKN 610
              F + 
Sbjct: 585 AEFFAEE 591


>gi|332525978|ref|ZP_08402119.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
 gi|332109529|gb|EGJ10452.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
          Length = 686

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + FG +  +  +S E L  +  +   +A  I   F
Sbjct: 526 VGEATAKDLARHFGGLDRVMDASVEQLLEVRDVGPIVAQSIRTFF 570


>gi|291544905|emb|CBL18014.1| DNA ligase, NAD-dependent [Ruminococcus sp. 18P13]
          Length = 660

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 11/81 (13%)

Query: 539 RFAITTHRKRRK---KAAYSPLD------EINGIGPLRKRLLL-QSFGTVKMISRSSPET 588
           RFA  + R       K+  +PLD       I GIG  R  +LL   F +V+ I  +S E 
Sbjct: 479 RFAEKSARNLLDAIEKSKSAPLDRVIFGLGIRGIG-QRAAVLLCDRFPSVEQIMNASVEQ 537

Query: 589 LASIEGISKKIACKIYNHFHK 609
           LA I+G    +A  +   F +
Sbjct: 538 LAEIDGFGSIMAESVVQAFRE 558


>gi|253575959|ref|ZP_04853293.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844753|gb|EES72767.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 672

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           + +   S L    I   G    ++L   FG+++ +  ++ E L ++  I   +A  I N 
Sbjct: 502 KGRDLASFLFALGIPNTGKSTTKVLADHFGSLEAVMSATTEELTALPDIGGIVADSIVNF 561

Query: 607 F 607
           F
Sbjct: 562 F 562


>gi|171059186|ref|YP_001791535.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
 gi|254781357|sp|B1Y6D4|DNLJ_LEPCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|170776631|gb|ACB34770.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
          Length = 768

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L + FG +  +  +S + L ++  +   +A  I 
Sbjct: 578 KSKQTTLARFLFSLGIRQVGEATAKALARHFGALDRVMDASVDQLQAVPDVGPIVALSIR 637

Query: 605 NHF 607
             F
Sbjct: 638 TFF 640


>gi|310826558|ref|YP_003958915.1| DNA ligase [Eubacterium limosum KIST612]
 gi|308738292|gb|ADO35952.1| DNA ligase [Eubacterium limosum KIST612]
          Length = 666

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    ++L   FG++  +  +S E L  I  I  K+A +I + F  + +
Sbjct: 514 GIPLVGANGAKILASHFGSMDALMEASEEELTEIYDIGGKMAVEIVDFFKTDAN 567


>gi|227494609|ref|ZP_03924925.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
 gi|226832343|gb|EEH64726.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
          Length = 806

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +GP   + L   F ++  + ++S   LA++EG+ + IA  +   F 
Sbjct: 647 SIRHVGPTASQALADHFRSLDALQQASVAELAAVEGVGQIIAEAVVAWFQ 696


>gi|332798609|ref|YP_004460108.1| DNA ligase [Tepidanaerobacter sp. Re1]
 gi|332696344|gb|AEE90801.1| DNA ligase [Tepidanaerobacter sp. Re1]
          Length = 675

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK   + L     I  IG      L Q F ++  +  ++ E L  I  I  K+A  I   
Sbjct: 504 KKQPLNRLVYALGIPLIGSKASLTLAQEFKSMDRLQNATYEELIKIPEIGDKMAESIIAF 563

Query: 607 FHKNTSHT 614
           F +  +  
Sbjct: 564 FKQEQTKA 571


>gi|152965283|ref|YP_001361067.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
 gi|190359261|sp|A6W7L4|DNLJ_KINRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151359800|gb|ABS02803.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
          Length = 696

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+++ I  ++ E +AS EG+   IA  +    
Sbjct: 529 SIRHVGPTAARALADRFGSMEAIEAATAEDIASAEGVGPTIAEAVVEWL 577


>gi|283458551|ref|YP_003363181.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
 gi|283134596|dbj|BAI65361.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
          Length = 747

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   R L   FG+++ I  +  E LA+++G+   IA  I   F ++
Sbjct: 585 SIRHVGPTAARALAAEFGSMQAIREADRERLAAVDGVGTTIADSIIEWFAED 636


>gi|255327262|ref|ZP_05368336.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
 gi|255295542|gb|EET74885.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
          Length = 735

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   R L   FG+++ I  +  E LA+++G+   IA  I   F ++
Sbjct: 573 SIRHVGPTAARALAAEFGSMQAIREADRERLAAVDGVGTTIADSIIEWFAED 624


>gi|261418603|ref|YP_003252285.1| NAD-dependent DNA ligase LigA [Geobacillus sp. Y412MC61]
 gi|319765418|ref|YP_004130919.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
 gi|261375060|gb|ACX77803.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC61]
 gi|317110284|gb|ADU92776.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
          Length = 670

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTSH 613
           +G    +LL + F T++ + +++ E L ++  I +K+A  I   F     + 
Sbjct: 514 VGAKAAQLLAEHFETMERLEKATKEELMAVPEIGEKMADSIIAFFSQPEAAE 565


>gi|161598439|ref|YP_120478.2| NAD-dependent DNA ligase LigA [Nocardia farcinica IFM 10152]
          Length = 710

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+++ I ++S + LA+ +G+   IA  +   F
Sbjct: 545 SIRHVGPTAARALAAEFGSMERIEQASVDELAATDGVGPTIAAAVAEWF 593


>gi|81373659|sp|Q5YRS7|DNLJ2_NOCFA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|54017744|dbj|BAD59114.1| putative DNA ligase [Nocardia farcinica IFM 10152]
          Length = 683

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+++ I ++S + LA+ +G+   IA  +   F
Sbjct: 518 SIRHVGPTAARALAAEFGSMERIEQASVDELAATDGVGPTIAAAVAEWF 566


>gi|301788720|ref|XP_002929779.1| PREDICTED: Fanconi anemia-associated protein of 24 kDa-like
           [Ailuropoda melanoleuca]
          Length = 215

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 548 RRKKAAY----SPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
             KK       S L    +I G+G ++  LLLQ F +++ +S +S   L  + G  + +A
Sbjct: 147 LSKKRTQVPELSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIRELEPVVG--QAVA 204

Query: 601 CKIYNHF 607
             I   F
Sbjct: 205 QHIQEFF 211


>gi|281344109|gb|EFB19693.1| hypothetical protein PANDA_020057 [Ailuropoda melanoleuca]
          Length = 214

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 548 RRKKAAY----SPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
             KK       S L    +I G+G ++  LLLQ F +++ +S +S   L  + G  + +A
Sbjct: 147 LSKKRTQVPELSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIRELEPVVG--QAVA 204

Query: 601 CKIYNHF 607
             I   F
Sbjct: 205 QHIQEFF 211


>gi|268316781|ref|YP_003290500.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
 gi|262334315|gb|ACY48112.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
          Length = 712

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 540 FAITTHRKR------RKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           FA T  R         K+   S L     I  +G     LL+Q F ++  ++ ++ + LA
Sbjct: 529 FAETRARNLLRAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAATIDELA 588

Query: 591 SIEGISKKIACKIYNHFHKNTS 612
           ++EG+    A  I N F    +
Sbjct: 589 ALEGVGPITAESIANWFRVEDN 610


>gi|27262356|gb|AAN87459.1| NAD-dependent DNA ligase [Heliobacillus mobilis]
          Length = 677

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L   FG+++ +  ++ E L +I  I  K+A  + N+F
Sbjct: 527 VGQTAAKTLASHFGSMEKLMAATQEELQAIPEIGPKMADSLKNYF 571


>gi|1352292|sp|P49421|DNLJ_RHOMR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|607820|gb|AAA93198.1| DNA ligase [Rhodothermus marinus]
          Length = 712

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 540 FAITTHRKR------RKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
           FA T  R         K+   S L     I  +G     LL+Q F ++  ++ ++ + LA
Sbjct: 529 FAETRARNLLRAIEASKQRPLSRLLFGLGIRHVGKTTAELLVQRFASIDELAAATIDELA 588

Query: 591 SIEGISKKIACKIYNHFHKNTS 612
           ++EG+    A  I N F    +
Sbjct: 589 ALEGVGPITAESIANWFRVEDN 610


>gi|73948534|ref|XP_533705.2| PREDICTED: hypothetical protein XP_533705 [Canis familiaris]
          Length = 339

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +I G+G ++  LLLQ F +++ +S +S   L  + G    +A  I   F
Sbjct: 289 QIPGVGKVKALLLLQKFPSIQQLSNASLRELEPVVG--PAVAQHIQAFF 335


>gi|161831535|ref|YP_001596473.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
 gi|190359249|sp|A9NC33|DNLJ_COXBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161763402|gb|ABX79044.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
          Length = 670

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G    R L + F  + ++ ++S ETL  I  I    A  I+
Sbjct: 505 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVAAENIH 564

Query: 605 NHFHKNTS 612
             FH+  +
Sbjct: 565 AFFHQKNN 572


>gi|148358134|ref|YP_001249336.1| GIY endonuclease [Gibberella zeae]
 gi|86142533|gb|ABC86648.1| GIY endonuclease [Gibberella zeae]
          Length = 277

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 14/95 (14%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM--HSNNHTHR---ITHMISQINNI 58
           +++ +  GVY  ++     LY+G + NL  R+ SY    ++    +   I  M      +
Sbjct: 47  KELRKKSGVYLFINNITNDLYIGSSTNLTSRMVSYYYYTNSQKPSKLVIIRAMKK--YGL 104

Query: 59  R------FTVTCTEVEALLLEANMIKRLKPRFNIL 87
                    +   ++  L+LE   I    P++N+L
Sbjct: 105 DNFSLAIIELCEKDL-CLILEQKWIDHYTPKYNVL 138


>gi|323143662|ref|ZP_08078336.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
 gi|322416595|gb|EFY07255.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
          Length = 696

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  I R+S E L  +  I   +A  IY+ F +
Sbjct: 530 VGESTALTLATHFETLNDIMRASVEDLMKLPDIGVVVANHIYDFFKE 576


>gi|223041748|ref|ZP_03611941.1| DNA ligase [Actinobacillus minor 202]
 gi|223017432|gb|EEF15850.1| DNA ligase [Actinobacillus minor 202]
          Length = 680

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FG++  I  ++ E L  ++ + + +A +I   + +
Sbjct: 530 VGEATALNLANHFGSLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 576


>gi|222481049|ref|YP_002567286.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
 gi|254781342|sp|B9LU22|DNLJ_HALLT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222453951|gb|ACM58216.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
          Length = 710

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 556 PLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           PLD+      I  +G    R L   FG +  I  +  + L +++ +  ++A  I      
Sbjct: 541 PLDDFLAGLGIPDVGATTARALAAHFGDLDAILDADEDALRAVDDVGPEVAESIRTFLDN 600

Query: 610 NTS 612
             +
Sbjct: 601 AEN 603


>gi|297528690|ref|YP_003669965.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
 gi|297251942|gb|ADI25388.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
          Length = 670

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTSH 613
           +G    +LL + F T++ + +++ E L ++  I +K+A  I   F     + 
Sbjct: 514 VGAKAAQLLAEHFETMERLEKATKEELMAVPEIGEKMADSIIAFFSQPEAAE 565


>gi|15894478|ref|NP_347827.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824]
 gi|81530636|sp|Q97JS8|DNLJ1_CLOAB RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|15024117|gb|AAK79167.1|AE007633_11 DNA ligase (NAD dependent), LigA [Clostridium acetobutylicum ATCC
           824]
 gi|325508609|gb|ADZ20245.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018]
          Length = 663

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G      L + F + + I ++S   L  ++ I   +A  I + F + 
Sbjct: 509 GIPNVGKKTATDLCKQFKSFENIKKASYFELILVQDIGSIVAKSIVDFFKQE 560


>gi|222110866|ref|YP_002553130.1| NAD-dependent DNA ligase [Acidovorax ebreus TPSY]
 gi|254781316|sp|B9MIW4|DNLJ_DIAST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221730310|gb|ACM33130.1| DNA ligase, NAD-dependent [Acidovorax ebreus TPSY]
          Length = 740

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L + FG +  I  +  E L  +  +   +A  I+
Sbjct: 565 KSKRTTLARFLFGLGIRHVGEATAKDLARHFGRLDAIMDAGVEQLLQVNDVGPVVAEAIH 624

Query: 605 NHF 607
             F
Sbjct: 625 TFF 627


>gi|86131748|ref|ZP_01050345.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134]
 gi|85817570|gb|EAQ38744.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134]
          Length = 664

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           +G    + L + + ++  I  ++ E L +++ I  KIA  +   F K  
Sbjct: 514 VGETVAKKLAKHYKSIDAIISATEEELVAVDEIGIKIAESVVAFFAKAE 562


>gi|212212963|ref|YP_002303899.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
 gi|254781302|sp|B6J1C6|DNLJ_COXB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212011373|gb|ACJ18754.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
          Length = 677

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G    R L + F  + ++ ++S ETL  I  I    A  I+
Sbjct: 508 KSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMKASIETLQEIRDIGPVAAENIH 567

Query: 605 NHFHK 609
             FH+
Sbjct: 568 AFFHQ 572


>gi|150400569|ref|YP_001324335.1| Hef nuclease [Methanococcus aeolicus Nankai-3]
 gi|150013272|gb|ABR55723.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 808

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +    IG L    LL  FGT++ I ++S E L  +EGI +  A KI +  
Sbjct: 753 ESFPDIGALMAENLLIKFGTIENIVKASVEELREVEGIGEITAKKIKSVL 802


>gi|315634861|ref|ZP_07890143.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
 gi|315476413|gb|EFU67163.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
          Length = 671

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G      L   F T++ +  +  E L  +  + + +A +I+
Sbjct: 504 KAKHTTLARFIFALGIRDVGEATALNLANHFKTLEALQNADLEQLQQVPDVGEVVANRIF 563

Query: 605 NHFHKN 610
             + + 
Sbjct: 564 VFWREE 569


>gi|169831769|ref|YP_001717751.1| NAD-dependent DNA ligase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|254781311|sp|B1I551|DNLJ_DESAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169638613|gb|ACA60119.1| DNA ligase, NAD-dependent [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 672

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 546 RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           R    +  +S    I  +G    RLL + FG++  +  +  E L ++  I  KIA  + N
Sbjct: 504 RNSLARLIFS--LGIRHVGERAARLLAERFGSLAGLMAAGREELEAVPEIGPKIADSVLN 561

Query: 606 HFHKNTS 612
            F +  +
Sbjct: 562 FFAREQN 568


>gi|68057854|gb|AAX88107.1| DNA ligase [Haemophilus influenzae 86-028NP]
          Length = 679

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
            A  + LD       I  +G      L   F T+  +  ++ E L  +  + + +A +I+
Sbjct: 512 NAKSTTLDRFIFALGIREVGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIF 571

Query: 605 NHFHK 609
             + +
Sbjct: 572 IFWRE 576


>gi|161761269|ref|YP_248767.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae 86-028NP]
 gi|166215835|sp|Q4QLJ0|DNLJ_HAEI8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|309973429|gb|ADO96630.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846]
          Length = 670

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
            A  + LD       I  +G      L   F T+  +  ++ E L  +  + + +A +I+
Sbjct: 503 NAKSTTLDRFIFALGIREVGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIF 562

Query: 605 NHFHK 609
             + +
Sbjct: 563 IFWRE 567


>gi|41615212|ref|NP_963710.1| DNA repair and recombination protein RadA [Nanoarchaeum equitans
           Kin4-M]
 gi|73913726|sp|Q74MX9|RADA_NANEQ RecName: Full=DNA repair and recombination protein radA
 gi|40068936|gb|AAR39271.1| NEQ426 [Nanoarchaeum equitans Kin4-M]
          Length = 325

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 558 DEI---NGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           D+I    G+GP     L+ + + ++  I+ +S E L     I +  A KI   
Sbjct: 11  DDIRSLPGVGPKTAEKLISAGYDSLIKIASASVEELMEAADIGEATARKIIEA 63


>gi|163940392|ref|YP_001645276.1| excinuclease ABC subunit C [Bacillus weihenstephanensis KBAB4]
 gi|229011966|ref|ZP_04169146.1| hypothetical protein bmyco0001_24120 [Bacillus mycoides DSM 2048]
 gi|229060384|ref|ZP_04197750.1| hypothetical protein bcere0026_24840 [Bacillus cereus AH603]
 gi|229133533|ref|ZP_04262360.1| hypothetical protein bcere0014_24520 [Bacillus cereus BDRD-ST196]
 gi|229167543|ref|ZP_04295281.1| hypothetical protein bcere0007_25060 [Bacillus cereus AH621]
 gi|163862589|gb|ABY43648.1| Excinuclease ABC C subunit domain protein [Bacillus
           weihenstephanensis KBAB4]
 gi|228616105|gb|EEK73192.1| hypothetical protein bcere0007_25060 [Bacillus cereus AH621]
 gi|228649933|gb|EEL05941.1| hypothetical protein bcere0014_24520 [Bacillus cereus BDRD-ST196]
 gi|228718974|gb|EEL70591.1| hypothetical protein bcere0026_24840 [Bacillus cereus AH603]
 gi|228749380|gb|EEL99225.1| hypothetical protein bmyco0001_24120 [Bacillus mycoides DSM 2048]
          Length = 126

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 47  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNNR--DEVYRIDACIVEDPTERE 104

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I + K ++N+
Sbjct: 105 IYETYIINKYKAKYNV 120


>gi|255021565|ref|ZP_05293608.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
 gi|254968953|gb|EET26472.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
          Length = 659

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 17/74 (22%)

Query: 551 KAAYSPLDEING-----------------IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           ++A   LDEI G                 +G    + L Q FG ++ +   S E L  + 
Sbjct: 478 RSAQKLLDEIAGSRQTEFARFLYALGIHQVGESTAKALAQHFGDLETLMAVSAEDLQEVP 537

Query: 594 GISKKIACKIYNHF 607
            +   +A  I + F
Sbjct: 538 DVGPVVAEAILHFF 551


>gi|62180995|ref|YP_217412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|75481868|sp|Q57LT1|DNLJ_SALCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|62128628|gb|AAX66331.1| DNA ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715476|gb|EFZ07047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 671

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAEGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|319955749|ref|YP_004167016.1| DNA ligase [Cellulophaga algicola DSM 14237]
 gi|319424409|gb|ADV51518.1| DNA ligase [Cellulophaga algicola DSM 14237]
          Length = 666

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G    + L +++  +  +  +S E L  ++ I ++IA  +   F   T+ 
Sbjct: 515 VGETVAKKLAKAYKNIDALKVASVEELVKVDEIGERIANSVVEFFQNETNQ 565


>gi|86608165|ref|YP_476927.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556707|gb|ABD01664.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 385

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           I GIGP R + L + FG+++   ++    L  +EGI   +A  I
Sbjct: 36  IKGIGPHRLKRLAEFFGSLERAWQADAPALRQVEGIGPTLAQAI 79


>gi|218903835|ref|YP_002451669.1| GIY-YIG catalytic domain protein [Bacillus cereus AH820]
 gi|228927761|ref|ZP_04090809.1| hypothetical protein bthur0010_24660 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229122260|ref|ZP_04251474.1| hypothetical protein bcere0016_25550 [Bacillus cereus 95/8201]
 gi|218536516|gb|ACK88914.1| GIY-YIG catalytic domain protein [Bacillus cereus AH820]
 gi|228661109|gb|EEL16735.1| hypothetical protein bcere0016_25550 [Bacillus cereus 95/8201]
 gi|228831824|gb|EEM77413.1| hypothetical protein bthur0010_24660 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 126

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   V     E  
Sbjct: 47  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACVVEDPTERE 104

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 105 IYETYIINEYKAKYNV 120


>gi|284042834|ref|YP_003393174.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
 gi|283947055|gb|ADB49799.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
          Length = 684

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I G+G +  R L Q F T+  ++ +S E +A+  GI   +   I++     
Sbjct: 519 GIEGVGSVTGRSLAQRFRTIDALTAASAEEIAATPGIGPIVGRLIHDQLRDE 570


>gi|320102706|ref|YP_004178297.1| NAD-dependent DNA ligase [Isosphaera pallida ATCC 43644]
 gi|319749988|gb|ADV61748.1| DNA ligase, NAD-dependent [Isosphaera pallida ATCC 43644]
          Length = 896

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           G+G      L + FGT++ +  ++ + L ++  I + +A  ++ +  
Sbjct: 533 GVGSA--ETLARKFGTLEALRAATIDELKAVPDIGEIVAESVFQYLR 577


>gi|240948595|ref|ZP_04752968.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
 gi|240297103|gb|EER47674.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
          Length = 679

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 23/47 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FG+++ I  ++ E L  ++ + + +A +I   + +
Sbjct: 530 VGEATALNLANHFGSLEAIRTATFEQLQEVQDVGEVVANRIVRFWQE 576


>gi|257784913|ref|YP_003180130.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
 gi|257473420|gb|ACV51539.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
          Length = 705

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G     LL Q FG+++ ++ +  E +A I GI  KIA  ++  F
Sbjct: 551 VGANVAELLAQEFGSIQALATAPVEKIAEIPGIGPKIAESVHEFF 595


>gi|225352232|ref|ZP_03743255.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157479|gb|EEG70818.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 909

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   R++  +FG++  I R+S + L+ I+GI  +IA  +   F
Sbjct: 753 LGPPTARVIANTFGSLDAIERASVDELSQIDGIGPEIAESVVTWF 797


>gi|146294702|ref|YP_001185126.1| ERCC4 domain-containing protein [Shewanella putrefaciens CN-32]
 gi|145566392|gb|ABP77327.1| ERCC4 domain protein [Shewanella putrefaciens CN-32]
 gi|319427939|gb|ADV56013.1| ERCC4 domain protein [Shewanella putrefaciens 200]
          Length = 212

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KR+K      L  +  + P     LL  F  ++ I  +  E L  +EG+ K+ A KI   
Sbjct: 150 KRKKNQQLFILQSLPEVDPKLASRLLYHFKNIEAIFTAPEEALIRVEGMGKEKARKIREA 209

Query: 607 F 607
            
Sbjct: 210 L 210


>gi|332653279|ref|ZP_08419024.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
 gi|332518425|gb|EGJ48028.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
          Length = 657

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + K    S L     I  +G    ++L Q FG++  +  ++ E L  ++ I    A  I 
Sbjct: 493 KSKSQDLSRLLFAFGIRQVGQKAGKILAQRFGSLDNLQAATVEELTQVDDIGAITAQSIV 552

Query: 605 NHF 607
           + F
Sbjct: 553 DWF 555


>gi|284166901|ref|YP_003405180.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
 gi|284016556|gb|ADB62507.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
          Length = 692

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKIYNHFHKN 610
            S L  I  +GP   R L + FGT +    ++ +    L  +  + + +A +++  F   
Sbjct: 527 LSAL-GIPHVGPTTARELAREFGTFEAFREAAEDEPERLEDVPDVGETVAEQLHEFFTSE 585

Query: 611 TSHT 614
            +  
Sbjct: 586 ANAA 589


>gi|330013648|ref|ZP_08307732.1| DNA ligase [Klebsiella sp. MS 92-3]
 gi|328533421|gb|EGF60158.1| DNA ligase [Klebsiella sp. MS 92-3]
          Length = 671

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ + ++S E L  +  +   +A   +N F + ++
Sbjct: 520 VGEATAAGLAAHFGTLEALEQASIEELQKVPDVGIVVATHTFNFFAEESN 569


>gi|328954073|ref|YP_004371407.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328454397|gb|AEB10226.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 676

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G     LL + F T+  +  ++ E L  IEGI  ++A  I ++F    +  
Sbjct: 527 VGEATANLLARHFQTLNALKAAAVEDLLLIEGIGPQVAASIRDYFQNPKNQA 578


>gi|304385588|ref|ZP_07367932.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284]
 gi|304328092|gb|EFL95314.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284]
          Length = 675

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI + R+   +   + L  I G+G    R L ++FG++  +  +S E   +++ + + +A
Sbjct: 503 AIDSSRQNSLERLVNGL-GIQGVGTKMARTLAEAFGSMDRLMEASVEEFDAVDTVGETLA 561

Query: 601 CKIYNHFHKNTS 612
             +   F    +
Sbjct: 562 NNLATFFQSEAA 573


>gi|319762938|ref|YP_004126875.1| DNA ligase, nad-dependent [Alicycliphilus denitrificans BC]
 gi|330825018|ref|YP_004388321.1| DNA ligase [Alicycliphilus denitrificans K601]
 gi|317117499|gb|ADU99987.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans BC]
 gi|329310390|gb|AEB84805.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans K601]
          Length = 717

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L        I  +G    + L + FG +  I  +  + L  +  +   +A  I
Sbjct: 547 QKSKQTTLPRFLFGLGIRHVGEATAKDLARHFGALDAIMDAGVDQLLQVNDVGPVVAESI 606

Query: 604 YNHF 607
           +  F
Sbjct: 607 HTFF 610


>gi|152971289|ref|YP_001336398.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|166215815|sp|A6TC47|DNLJ_KLEP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150956138|gb|ABR78168.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 671

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ + ++S E L  +  +   +A   +N F + ++
Sbjct: 520 VGEATAAGLAAHFGTLEALEQASIEELQKVPDVGIVVATHTFNFFAEESN 569


>gi|326574755|gb|EGE24691.1| NAD-dependent DNA ligase [Moraxella catarrhalis 101P30B1]
          Length = 691

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G      L Q FG ++ I  +  + L ++  I +  A  IY
Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579

Query: 605 NHFHKN 610
           + F  +
Sbjct: 580 DFFRAS 585


>gi|326573825|gb|EGE23778.1| NAD-dependent DNA ligase [Moraxella catarrhalis O35E]
          Length = 691

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G      L Q FG ++ I  +  + L ++  I +  A  IY
Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579

Query: 605 NHFHKN 610
           + F  +
Sbjct: 580 DFFRAS 585


>gi|326572929|gb|EGE22914.1| NAD-dependent DNA ligase [Moraxella catarrhalis CO72]
          Length = 691

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G      L Q FG ++ I  +  + L ++  I +  A  IY
Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579

Query: 605 NHFHKN 610
           + F  +
Sbjct: 580 DFFRAS 585


>gi|326570074|gb|EGE20120.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC7]
          Length = 691

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G      L Q FG ++ I  +  + L ++  I +  A  IY
Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579

Query: 605 NHFHKN 610
           + F  +
Sbjct: 580 DFFRAS 585


>gi|326569993|gb|EGE20040.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC1]
          Length = 691

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G      L Q FG ++ I  +  + L ++  I +  A  IY
Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579

Query: 605 NHFHKN 610
           + F  +
Sbjct: 580 DFFRAS 585


>gi|326564268|gb|EGE14498.1| NAD-dependent DNA ligase [Moraxella catarrhalis 103P14B1]
          Length = 691

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G      L Q FG ++ I  +  + L ++  I +  A  IY
Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579

Query: 605 NHFHKN 610
           + F  +
Sbjct: 580 DFFRAS 585


>gi|326562480|gb|EGE12798.1| NAD-dependent DNA ligase [Moraxella catarrhalis 46P47B1]
 gi|326567201|gb|EGE17321.1| NAD-dependent DNA ligase [Moraxella catarrhalis 12P80B1]
 gi|326568292|gb|EGE18374.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC8]
          Length = 691

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G      L Q FG ++ I  +  + L ++  I +  A  IY
Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579

Query: 605 NHFHKN 610
           + F  +
Sbjct: 580 DFFRAS 585


>gi|326559356|gb|EGE09783.1| NAD-dependent DNA ligase [Moraxella catarrhalis 7169]
          Length = 691

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G      L Q FG ++ I  +  + L ++  I +  A  IY
Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579

Query: 605 NHFHKN 610
           + F  +
Sbjct: 580 DFFRAS 585


>gi|320157090|ref|YP_004189469.1| DNA ligase [Vibrio vulnificus MO6-24/O]
 gi|319932402|gb|ADV87266.1| DNA ligase [Vibrio vulnificus MO6-24/O]
          Length = 669

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G      L + F T++ I  ++ E L  +  I + +A  I   F +  + 
Sbjct: 521 VGEATAANLARHFKTLEAIQTATHEQLIEVPDIGEVVARHITAFFAEEKNQ 571


>gi|296113927|ref|YP_003627865.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
 gi|295921621|gb|ADG61972.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
          Length = 691

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G      L Q FG ++ I  +  + L ++  I +  A  IY
Sbjct: 520 KSKQTTLPRFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIY 579

Query: 605 NHFHKN 610
           + F  +
Sbjct: 580 DFFRAS 585


>gi|262037707|ref|ZP_06011149.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264]
 gi|261748179|gb|EEY35576.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264]
          Length = 697

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           K  YS    I  +G     LL+++F  ++ +  S  E L  I+G+ +K+A  ++N+ +  
Sbjct: 536 KVLYS--LGIPFVGKFTANLLVKNFKNIENLKNSEIEELLQIKGVGEKVAISVHNYLNNE 593

Query: 611 TS 612
            +
Sbjct: 594 DN 595


>gi|257439785|ref|ZP_05615540.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
 gi|257197805|gb|EEU96089.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
          Length = 449

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG     LL + FG+++ I  ++ E +  I+G    +A  +   F K+
Sbjct: 293 GIRNIGDKAAALLAEHFGSLQAIREATEEQIGEIDGFGGVMAQSVTEFFAKD 344


>gi|27363688|ref|NP_759216.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus CMCP6]
 gi|81449211|sp|Q8DFK5|DNLJ_VIBVU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|27359804|gb|AAO08743.1| DNA ligase, NAD-dependent [Vibrio vulnificus CMCP6]
          Length = 669

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G      L + F T++ I  ++ E L  +  I + +A  I   F +  + 
Sbjct: 521 VGEATAANLARHFKTLEAIQTATHEQLIEVPDIGEVVARHITAFFAEEKNQ 571


>gi|37679166|ref|NP_933775.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus YJ016]
 gi|81758078|sp|Q7MMT5|DNLJ_VIBVY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|37197908|dbj|BAC93746.1| NAD-dependent DNA ligase [Vibrio vulnificus YJ016]
          Length = 669

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G      L + F T++ I  ++ E L  +  I + +A  I   F +  + 
Sbjct: 521 VGEATAANLARHFKTLEAIQTATHEQLIEVPDIGEVVARHITAFFAEEKNQ 571


>gi|15669699|ref|NP_248512.1| Hef nuclease [Methanocaldococcus jannaschii DSM 2661]
 gi|3915469|sp|Q58900|Y1505_METJA RecName: Full=Putative ATP-dependent RNA helicase MJ1505
 gi|2826423|gb|AAB99518.1| ATP dependent RNA helicase, putative [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 778

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + +  +G      LL+ F TV+ +  +  E L  +EG+ K+ A KI    
Sbjct: 723 ESLPDVGGALAERLLKHFKTVENVFTAKEEELMKVEGVGKERAKKIREVL 772


>gi|194333226|ref|YP_002015086.1| DNA protecting protein DprA [Prosthecochloris aestuarii DSM 271]
 gi|194311044|gb|ACF45439.1| DNA protecting protein DprA [Prosthecochloris aestuarii DSM 271]
          Length = 382

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I GIGP R + LLQ  G+   +       L    GI   +A KI + FH
Sbjct: 22  GIEGIGPARIKALLQQAGSPSNVLALPKWKLEETRGIGAALAEKITSFFH 71


>gi|332291077|ref|YP_004429686.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169163|gb|AEE18418.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
          Length = 664

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G    + L + + ++  I  ++ E L +++ I  KIA  +   F K    T
Sbjct: 514 VGETVAKKLAKHYKSIDAIISATEEELVAVDEIGSKIAESVMAFFAKAEHIT 565


>gi|320094066|ref|ZP_08025884.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979007|gb|EFW10532.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 776

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  +  +  E LA+++G+   IA  + + F
Sbjct: 617 SIRHVGPTAARALAARFGSMDALRAADVEELAAVDGVGGVIAQSLADWF 665


>gi|2127880|pir||H64487 eIF-4A family probable ATP-dependent RNA helicase homolog -
           Methanococcus jannaschii
          Length = 784

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + +  +G      LL+ F TV+ +  +  E L  +EG+ K+ A KI    
Sbjct: 729 ESLPDVGGALAERLLKHFKTVENVFTAKEEELMKVEGVGKERAKKIREVL 778


>gi|296242076|ref|YP_003649563.1| ERCC4 domain-containing protein [Thermosphaera aggregans DSM 11486]
 gi|296094660|gb|ADG90611.1| ERCC4 domain protein [Thermosphaera aggregans DSM 11486]
          Length = 243

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           GP+  R LL++F T+K ++ +S   L  +E I +K A +I+  F+  
Sbjct: 189 GPVIGRKLLKTFKTLKNLANASISELLRVESIGEKRAEEIFLIFNSE 235


>gi|319776649|ref|YP_004139137.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
 gi|329124164|ref|ZP_08252711.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
 gi|317451240|emb|CBY87473.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
 gi|327467589|gb|EGF13087.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
          Length = 670

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567


>gi|319897423|ref|YP_004135620.1| DNA ligase, nad(+)-dependent [Haemophilus influenzae F3031]
 gi|317432929|emb|CBY81295.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3031]
          Length = 679

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 530 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 576


>gi|229846132|ref|ZP_04466244.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
 gi|229811136|gb|EEP46853.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
          Length = 670

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567


>gi|237747723|ref|ZP_04578203.1| DNA ligase [Oxalobacter formigenes OXCC13]
 gi|229379085|gb|EEO29176.1| DNA ligase [Oxalobacter formigenes OXCC13]
          Length = 685

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + KK  ++       I  +G    R L   FG +  + ++S E L  +  I   +A  I 
Sbjct: 513 KSKKTTFARFLYALGIRHVGEATARALAGYFGNLANLRQASEEQLLEVADIGPIVAASIK 572

Query: 605 NHF 607
             F
Sbjct: 573 QFF 575


>gi|148828262|ref|YP_001293015.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
 gi|166215779|sp|A5UIM6|DNLJ_HAEIG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148719504|gb|ABR00632.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
          Length = 670

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567


>gi|148826285|ref|YP_001291038.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittEE]
 gi|166215778|sp|A5UD04|DNLJ_HAEIE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148716445|gb|ABQ98655.1| DNA ligase [Haemophilus influenzae PittEE]
          Length = 670

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567


>gi|145636448|ref|ZP_01792116.1| DNA ligase [Haemophilus influenzae PittHH]
 gi|145270273|gb|EDK10208.1| DNA ligase [Haemophilus influenzae PittHH]
          Length = 670

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567


>gi|145634259|ref|ZP_01789970.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
 gi|145268703|gb|EDK08696.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
          Length = 670

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567


>gi|145627934|ref|ZP_01783735.1| DNA ligase [Haemophilus influenzae 22.1-21]
 gi|144979709|gb|EDJ89368.1| DNA ligase [Haemophilus influenzae 22.1-21]
          Length = 346

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 197 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 243


>gi|260580185|ref|ZP_05848015.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
 gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd KW20]
 gi|260093469|gb|EEW77402.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
          Length = 679

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 530 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 576


>gi|30995424|ref|NP_439257.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae Rd KW20]
 gi|145638086|ref|ZP_01793696.1| DNA ligase [Haemophilus influenzae PittII]
 gi|166214918|sp|P43813|DNLJ_HAEIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145272415|gb|EDK12322.1| DNA ligase [Haemophilus influenzae PittII]
 gi|309751252|gb|ADO81236.1| NAD-dependent DNA ligase [Haemophilus influenzae R2866]
          Length = 670

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 567


>gi|253680829|ref|ZP_04861632.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873]
 gi|253562678|gb|EES92124.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873]
          Length = 664

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G      L + F T++ +  ++   L +IE I + +A  I   F  +T
Sbjct: 513 GIPNVGKKTSIDLCRKFKTLQKLKSATFHDLIAIEDIGEIVAESIIEFFKDDT 565


>gi|187251076|ref|YP_001875558.1| transcription termination factor [Elusimicrobium minutum Pei191]
 gi|186971236|gb|ACC98221.1| Transcription termination factor [Elusimicrobium minutum Pei191]
          Length = 463

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
              S L  + GIGP     L+++ F +V+ I+   PE LA+++GI +K A KI  
Sbjct: 382 NLESLLASVEGIGPKTAETLVKAGFSSVEKIAALEPEHLATVQGIGEKSAAKIIE 436


>gi|154687371|ref|YP_001422532.1| YurQ [Bacillus amyloliquefaciens FZB42]
 gi|154353222|gb|ABS75301.1| YurQ [Bacillus amyloliquefaciens FZB42]
          Length = 124

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  L++RIK +   N    +      ++  I   V    +E  
Sbjct: 45  GIFMFYNIHDELLFVGKARKLRQRIKKHFEDNVSPVKHHR--DEVYKIEVCVVNDPMERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E   I  L+ ++NI
Sbjct: 103 IYETYAINTLQSKYNI 118


>gi|332880187|ref|ZP_08447868.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681836|gb|EGJ54752.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 670

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G +  + L + F ++  ++ +S E +  I GI   IA  +  +F    +
Sbjct: 519 VGEIAAKALARHFKSMDALASASLEDMLQINGIGVVIAESVIRYFANEAN 568


>gi|269958959|ref|YP_003328748.1| uvrC domain containing protein [Anaplasma centrale str. Israel]
 gi|269848790|gb|ACZ49434.1| uvrC domain containing protein [Anaplasma centrale str. Israel]
          Length = 87

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKR 34
          GVY+ML   G VLYVGKA +L+KR
Sbjct: 32 GVYKMLGANGLVLYVGKAKDLKKR 55


>gi|262042032|ref|ZP_06015211.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259040623|gb|EEW41715.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ + ++S E L  +  +   +A   +N F + ++
Sbjct: 520 VGEATAAGLAAHFGTLEALEQASIEELQKVPDVGIVVAAHTFNFFAEESN 569


>gi|283786048|ref|YP_003365913.1| DNA ligase [Citrobacter rodentium ICC168]
 gi|282949502|emb|CBG89116.1| DNA ligase [Citrobacter rodentium ICC168]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAFFGTLEALEAASIEELQKVPDVGIVVATHVFNFFAEESN 569


>gi|332970057|gb|EGK09055.1| NAD-dependent DNA ligase LigA [Desmospora sp. 8437]
          Length = 670

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G     +L Q FG ++ I  +  E L +++ I  K+A  I  +F K
Sbjct: 517 VGAKGALILAQHFGGLEAIMAADREELEAVDEIGPKMAESIETYFDK 563


>gi|323226774|gb|EGA10965.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 338

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 187 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 236


>gi|322613832|gb|EFY10771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617441|gb|EFY14340.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624929|gb|EFY21758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629628|gb|EFY26404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633942|gb|EFY30679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635621|gb|EFY32332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639981|gb|EFY36651.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644326|gb|EFY40867.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322655311|gb|EFY51620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658357|gb|EFY54623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664357|gb|EFY60554.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668412|gb|EFY64568.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673252|gb|EFY69358.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676644|gb|EFY72712.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683394|gb|EFY79408.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685720|gb|EFY81713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192602|gb|EFZ77831.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196835|gb|EFZ81978.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202141|gb|EFZ87199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208024|gb|EFZ92969.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212850|gb|EFZ97659.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217119|gb|EGA01841.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219619|gb|EGA04102.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323229192|gb|EGA13316.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235493|gb|EGA19577.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237321|gb|EGA21384.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245552|gb|EGA29550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248968|gb|EGA32891.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253065|gb|EGA36897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255865|gb|EGA39610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261411|gb|EGA44996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266454|gb|EGA49942.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269716|gb|EGA53166.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|238912842|ref|ZP_04656679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|289804564|ref|ZP_06535193.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 551

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 409 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 458


>gi|224583040|ref|YP_002636838.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254781413|sp|C0PZB4|DNLJ_SALPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|224467567|gb|ACN45397.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|213618983|ref|ZP_03372809.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 544

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 468 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 517


>gi|213419664|ref|ZP_03352730.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 190

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 39  VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 88


>gi|168817829|ref|ZP_02829829.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205345161|gb|EDZ31925.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086917|emb|CBY96687.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|200388789|ref|ZP_03215401.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199605887|gb|EDZ04432.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|168466836|ref|ZP_02700690.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195630762|gb|EDX49354.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|168261543|ref|ZP_02683516.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349337|gb|EDZ35968.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|194444893|ref|YP_002041687.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|254781412|sp|B4SZU5|DNLJ_SALNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194403556|gb|ACF63778.1| DNA ligase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|204929538|ref|ZP_03220612.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321257|gb|EDZ06457.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|197247622|ref|YP_002147380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|254781407|sp|B5F0F5|DNLJ_SALA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197211325|gb|ACH48722.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|168238909|ref|ZP_02663967.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734182|ref|YP_002115493.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|254781415|sp|B4TQF8|DNLJ_SALSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194709684|gb|ACF88905.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288317|gb|EDY27698.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|168231967|ref|ZP_02657025.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194471791|ref|ZP_03077775.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458155|gb|EDX46994.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205333574|gb|EDZ20338.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|161612830|ref|YP_001586795.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|190359282|sp|A9N362|DNLJ_SALPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161362194|gb|ABX65962.1| hypothetical protein SPAB_00529 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|56412686|ref|YP_149761.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361620|ref|YP_002141256.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81362021|sp|Q5PNE2|DNLJ_SALPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781414|sp|B5BB72|DNLJ_SALPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56126943|gb|AAV76449.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197093096|emb|CAR58535.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|16765747|ref|NP_461362.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167991721|ref|ZP_02572820.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|197262860|ref|ZP_03162934.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|81522316|sp|Q8ZN89|DNLJ_SALTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16420966|gb|AAL21321.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|197241115|gb|EDY23735.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329843|gb|EDZ16607.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247627|emb|CBG25454.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267994529|gb|ACY89414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158979|emb|CBW18492.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312913414|dbj|BAJ37388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222873|gb|EFX47944.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323130756|gb|ADX18186.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332989355|gb|AEF08338.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|29140957|ref|NP_804299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213160907|ref|ZP_03346617.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424270|ref|ZP_03357114.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213583650|ref|ZP_03365476.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213650852|ref|ZP_03380905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|29136582|gb|AAO68148.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|16761347|ref|NP_456964.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|81513487|sp|Q8Z4W4|DNLJ_SALTI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|25294013|pir||AI0809 DNA ligase (NAD) (EC 6.5.1.2) - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503646|emb|CAD07659.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|124027717|ref|YP_001013037.1| ERCC4-type nuclease [Hyperthermus butylicus DSM 5456]
 gi|123978411|gb|ABM80692.1| predicted ERCC4-type nuclease [Hyperthermus butylicus DSM 5456]
          Length = 223

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            + GIGP     LL+ FG+++ I R+S   L  + G  + +  K+Y   H
Sbjct: 165 SLPGIGPRLAERLLEKFGSIEAICRASIVELEKVLGYERAV--KVYRVIH 212


>gi|293395040|ref|ZP_06639327.1| DNA ligase [Serratia odorifera DSM 4582]
 gi|291422447|gb|EFE95689.1| DNA ligase [Serratia odorifera DSM 4582]
          Length = 673

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 20/47 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FG++  +  +  E L  +  + + +A  + N F +
Sbjct: 520 VGESTAANLAAHFGSLDKLRAADVEALKQVPDVGEVVAKHVVNFFAE 566


>gi|270290149|ref|ZP_06196375.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4]
 gi|270281686|gb|EFA27518.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4]
          Length = 675

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R+   +   + L  I G+G    R L ++FG++  +  +S E   +++ + + +A
Sbjct: 503 AIDRSRQNSLERLVNGL-GIQGVGTKMARTLAEAFGSMDRLMEASVEEFDAVDTVGETLA 561

Query: 601 CKIYNHFHKNTS 612
             +   F    +
Sbjct: 562 NNLATFFQSEAA 573


>gi|312898543|ref|ZP_07757933.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
 gi|310620462|gb|EFQ04032.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
          Length = 672

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    R+L + FG+V+ ++ +S E L  I+ I  +IA  ++     + +
Sbjct: 517 VGAKAARILAEHFGSVEALAAASTEELTDIDEIGPRIAESVHTWIRTDEA 566


>gi|321442676|gb|EFX59863.1| hypothetical protein DAPPUDRAFT_346733 [Daphnia pulex]
          Length = 276

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 3   SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKR-----IKSYMHS--NNHTHRITHMISQI 55
            + +P  PGVY + +     +YVG +  L+ R     +  +     N++ +++     + 
Sbjct: 17  LDDVPNSPGVYVVFNQQNEAVYVGDSVKLKTRWYAGHLNEHTQGQRNDNPYKLADEFQEG 76

Query: 56  NNIRFTVTCTEVEALLLEANMIKRLKPRFNIL 87
             +RF    +E  A  +EA++I   KP+ N  
Sbjct: 77  CTVRFVSMESEATAAAVEAHLIATEKPKKNSR 108


>gi|241764431|ref|ZP_04762455.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
 gi|241366173|gb|EER60750.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
          Length = 697

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L + FG +  I  ++ E L ++  +   +A  I+
Sbjct: 526 KSKQTTLPRFLFALGIRHVGEATAKDLARHFGVLDAIMDATEEQLLAVNDVGPVVAKAIH 585

Query: 605 NHF 607
             F
Sbjct: 586 TFF 588


>gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas arsenicoxydans]
 gi|166215813|sp|A4G4R4|DNLJ_HERAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|133738456|emb|CAL61501.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Herminiimonas
           arsenicoxydans]
          Length = 696

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L + FG +  + ++SPE L  +  I   +A  I 
Sbjct: 526 KSKRTTLARFIYALGIRHVGEATAKELARHFGNLDALLQASPEQLLEVADIGPVVAASIT 585

Query: 605 NHF 607
             F
Sbjct: 586 AFF 588


>gi|323359739|ref|YP_004226135.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
 gi|323276110|dbj|BAJ76255.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
          Length = 810

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSHT 614
            I  +GP+  R L Q FG++  I  ++ E LA++EG+   IA  + + F    H+    T
Sbjct: 628 NIRHVGPVAARALAQWFGSLDAIRAATREELAAVEGVGGIIADAVIDWFEVDWHREIVET 687


>gi|256425884|ref|YP_003126537.1| DNA protecting protein DprA [Chitinophaga pinensis DSM 2588]
 gi|256040792|gb|ACU64336.1| DNA protecting protein DprA [Chitinophaga pinensis DSM 2588]
          Length = 378

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L +I  IG +  + LL  FG+   +  +S + L +I  I    A  I+  
Sbjct: 18  ALTQIPQIGDIVAKKLLAHFGSASEVLNASRKELGNIPDIGIVRADAIFQF 68


>gi|311740579|ref|ZP_07714406.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304099|gb|EFQ80175.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 689

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 25/86 (29%)

Query: 547 KRRKK-----------AAYSPLDEING--------------IGPLRKRLLLQSFGTVKMI 581
           KR KK              S L+E+ G              +GP+  R L   +G++  +
Sbjct: 497 KRSKKEGNAKVNTAGQNLLSNLEEVKGRDFWRVLVSLSIRHVGPIAARALASRYGSMDRL 556

Query: 582 SRSSPETLASIEGISKKIACKIYNHF 607
             +  E LA ++G+   IA   ++ F
Sbjct: 557 RAAKTEELAEVDGVGMTIAQSFHDWF 582


>gi|294790698|ref|ZP_06755856.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304]
 gi|294458595|gb|EFG26948.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304]
          Length = 815

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    RLL + F T++ +S++S E L  ++G+ ++IA  I   F
Sbjct: 652 SIRHVGAPTARLLSRKFKTLQALSQASVEDLLQVDGVGEEIAQSIERWF 700


>gi|197117724|ref|YP_002138151.1| NAD-dependent DNA ligase [Geobacter bemidjiensis Bem]
 gi|254781337|sp|B5EIJ0|DNLJ_GEOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197087084|gb|ACH38355.1| DNA ligase, NAD-dependent [Geobacter bemidjiensis Bem]
          Length = 668

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K+   S L     I  +G    +LL  +FG+++ ++ +S E L SI  +  ++A  I + 
Sbjct: 506 KERELSRLIFALGIRHVGEHTAKLLASAFGSMENLAAASEEELTSIREVGPQVAASIADF 565

Query: 607 FHKNTS 612
           F    +
Sbjct: 566 FKSEEN 571


>gi|309799921|ref|ZP_07694125.1| UvrABC system protein C [Streptococcus infantis SK1302]
 gi|308116448|gb|EFO53920.1| UvrABC system protein C [Streptococcus infantis SK1302]
          Length = 38

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 2  SSEQMPECPGVYQMLDIAGRVLYVGKAY 29
            E +P  PG Y   D  G ++YVGKA 
Sbjct: 8  KLELLPTSPGCYIHKDKNGTIIYVGKAK 35


>gi|289192001|ref|YP_003457942.1| helicase domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938451|gb|ADC69206.1| helicase domain protein [Methanocaldococcus sp. FS406-22]
          Length = 783

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + +  +G      LL+ F TV+ +  +  E L  +EG+ K+ A KI    
Sbjct: 728 ESLPDVGGALAERLLKHFKTVERVFTAKEEELMKVEGVGKERAKKIREVL 777


>gi|332290231|ref|YP_004421083.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
 gi|330433127|gb|AEC18186.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
          Length = 671

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA  + L        I  +G    R L   F T++ I  ++ E L  ++ I + +A +I 
Sbjct: 503 KAKKTTLARFLFALGIREVGEATARNLANHFHTLENIKNATFEQLQQVQDIGEVVANRII 562

Query: 605 NHFHK 609
             + +
Sbjct: 563 LFWQE 567


>gi|326381521|ref|ZP_08203215.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
 gi|326199768|gb|EGD56948.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
          Length = 692

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L  +FG ++ I  +S E LA ++G+    A  +++ F
Sbjct: 529 SIRHVGPTPARALATAFGDLEAIQAASVEDLAQVDGLGPTRAASVHDWF 577


>gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
 gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
          Length = 682

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I G+G    R+L  SF T++ + ++  ++L  +  +    A  IY+ F   
Sbjct: 526 GIRGVGETTARMLANSFQTLEALQQADVDSLKKVPDVGDITAEWIYDFFRAE 577


>gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
 gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
          Length = 678

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I G+G    R+L  SF T++ + ++  ++L  +  +    A  IY+ F   
Sbjct: 522 GIRGVGETTARMLANSFQTLEALQQADVDSLKKVPDVGDITAEWIYDFFRAE 573


>gi|124302218|gb|ABN05294.1| DNA ligase [Geobacillus sp. g]
          Length = 670

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTSH 613
           +G    +LL + F T++ + +++ E L ++  I +K+A  I   F     + 
Sbjct: 514 VGAKAAQLLAEHFETMERLEKATKEELMAVPEIGEKMAGSIIAFFSQPEAAE 565


>gi|332141274|ref|YP_004427012.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551296|gb|AEA98014.1| DNA ligase, NAD-dependent [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 517

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  I  +S E L  ++ + + +A  I+N F+++
Sbjct: 365 VGEATAANLAAHFETLDAIRDASIEALVEVQDVGEIVATHIFNFFNES 412


>gi|312140511|ref|YP_004007847.1| DNA ligase (nad+) liga [Rhodococcus equi 103S]
 gi|311889850|emb|CBH49167.1| DNA ligase (NAD+) LigA [Rhodococcus equi 103S]
          Length = 712

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+++ I  +  E LA+++G+   IA  +   F
Sbjct: 555 SIRHVGPTAARALASEFGSLERIENAGVEELAAVDGVGGTIAAAVVAWF 603


>gi|325675870|ref|ZP_08155554.1| DNA ligase [Rhodococcus equi ATCC 33707]
 gi|325553841|gb|EGD23519.1| DNA ligase [Rhodococcus equi ATCC 33707]
          Length = 711

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+++ I  +  E LA+++G+   IA  +   F
Sbjct: 554 SIRHVGPTAARALASEFGSLERIENAGVEELAAVDGVGGTIAAAVVAWF 602


>gi|225377122|ref|ZP_03754343.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
           16841]
 gi|225211027|gb|EEG93381.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
           16841]
          Length = 668

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    + +++ F  +  +  +S E L  +  I +  A  I N F
Sbjct: 516 GIPNVGKAAAKAIMKYFKDMDHLKEASVEQLTEVNDIGEVSALCIRNFF 564


>gi|159897339|ref|YP_001543586.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
 gi|254781348|sp|A9AXP4|DNLJ_HERA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|159890378|gb|ABX03458.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
          Length = 673

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 12/68 (17%)

Query: 547 KRRKKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           KRR      PLD       ING+G +    L + F ++  +++++ E L +IEGI    A
Sbjct: 507 KRR------PLDRVITALGINGVGTVAAADLARYFRSLPALAQATIEQLTAIEGIGGSTA 560

Query: 601 CKIYNHFH 608
             + + F+
Sbjct: 561 QSVVDFFN 568


>gi|255013963|ref|ZP_05286089.1| DNA ligase [Bacteroides sp. 2_1_7]
 gi|301310547|ref|ZP_07216486.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3]
 gi|300832121|gb|EFK62752.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3]
          Length = 664

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  +   S L+E              I  +G    + L+ +F +++ + ++S E L +++
Sbjct: 485 KSARNLMSSLEESKQVPFERVLFGLGIRFVGETVAKRLVSAFHSIEALEQASLEDLVAVD 544

Query: 594 GISKKIACKIYNHFHKNTSHT 614
            I ++IA  + ++F    + T
Sbjct: 545 EIGERIAQSVLSYFSDEKNRT 565


>gi|228921377|ref|ZP_04084701.1| hypothetical protein bthur0011_23800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838322|gb|EEM83639.1| hypothetical protein bthur0011_23800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 126

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 47  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 105 IYETYIINEYKAKYNV 120


>gi|218897722|ref|YP_002446133.1| GIY-YIG catalytic domain protein [Bacillus cereus G9842]
 gi|228905631|ref|ZP_04069560.1| hypothetical protein bthur0014_66760 [Bacillus thuringiensis IBL
           4222]
 gi|228939821|ref|ZP_04102398.1| hypothetical protein bthur0008_24740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228965641|ref|ZP_04126722.1| hypothetical protein bthur0004_24670 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228972710|ref|ZP_04133309.1| hypothetical protein bthur0003_24770 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979294|ref|ZP_04139631.1| hypothetical protein bthur0002_24770 [Bacillus thuringiensis Bt407]
 gi|218542741|gb|ACK95135.1| GIY-YIG catalytic domain protein [Bacillus cereus G9842]
 gi|228780402|gb|EEM28632.1| hypothetical protein bthur0002_24770 [Bacillus thuringiensis Bt407]
 gi|228786925|gb|EEM34905.1| hypothetical protein bthur0003_24770 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228794049|gb|EEM41571.1| hypothetical protein bthur0004_24670 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228819752|gb|EEM65800.1| hypothetical protein bthur0008_24740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228854000|gb|EEM98729.1| hypothetical protein bthur0014_66760 [Bacillus thuringiensis IBL
           4222]
 gi|326940471|gb|AEA16367.1| UvrC-like protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 126

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 47  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 105 IYETYIINEYKAKYNV 120


>gi|240168924|ref|ZP_04747583.1| NAD-dependent DNA ligase LigA [Mycobacterium kansasii ATCC 12478]
          Length = 683

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FGT++ I+ +S E LA++EG+   IA  +   F
Sbjct: 521 SIRHVGPTAARALATEFGTLEAIANASTEQLAAVEGVGPTIAAAVSEWF 569


>gi|55379328|ref|YP_137178.1| Hef nuclease [Haloarcula marismortui ATCC 43049]
 gi|55232053|gb|AAV47472.1| ATP-dependent RNA helicase homolog eIF-4A [Haloarcula marismortui
           ATCC 43049]
          Length = 852

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +GP+  R LL+SFG+V+ +  +  + L  + GI    A +I  
Sbjct: 802 VGPVTARTLLESFGSVEAVMTADKDDLLEVSGIGDVTADRIRE 844


>gi|296046593|gb|ADG86438.1| NAD-dependent DNA ligase [synthetic construct]
          Length = 689

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  I  +S E L ++  + + +A  I N F + 
Sbjct: 536 VGEATAANLANHFYTLAAIESASLEDLQNVSDVGEVVAKNIINFFKEE 583


>gi|296046569|gb|ADG86426.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 689

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  I  +S E L ++  + + +A  I N F + 
Sbjct: 536 VGEATAANLANHFYTLAAIESASLEDLQNVSDVGEVVAKNIINFFKEE 583


>gi|71281008|ref|YP_270140.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
 gi|123774873|sp|Q47YI0|DNLJ_COLP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71146748|gb|AAZ27221.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
          Length = 689

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  I  +S E L ++  + + +A  I N F + 
Sbjct: 536 VGEATAANLANHFYTLAAIESASLEDLQNVSDVGEVVAKNIINFFKEE 583


>gi|30262683|ref|NP_845060.1| endo/excinuclease amino terminal domain-containing protein
           [Bacillus anthracis str. Ames]
 gi|42781791|ref|NP_979038.1| endo/excinuclease amino terminal domain-containing protein
           [Bacillus cereus ATCC 10987]
 gi|47527998|ref|YP_019347.1| endo/excinuclease amino terminal domain-containing protein
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185529|ref|YP_028781.1| endo/excinuclease amino terminal domain-containing protein
           [Bacillus anthracis str. Sterne]
 gi|49481678|ref|YP_036807.1| excinuclease ABC, C subunit, N-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52142795|ref|YP_084035.1| excinuclease ABC, C subunit, N-terminal region [Bacillus cereus
           E33L]
 gi|65320010|ref|ZP_00392969.1| COG0322: Nuclease subunit of the excinuclease complex [Bacillus
           anthracis str. A2012]
 gi|118478080|ref|YP_895231.1| excinuclease ABC, C subunit, N-terminal region [Bacillus
           thuringiensis str. Al Hakam]
 gi|190565332|ref|ZP_03018252.1| GIY-YIG catalytic domain [Bacillus anthracis Tsiankovskii-I]
 gi|196032561|ref|ZP_03099975.1| GIY-YIG catalytic domain protein [Bacillus cereus W]
 gi|196042253|ref|ZP_03109533.1| GIY-YIG catalytic domain protein [Bacillus cereus NVH0597-99]
 gi|196043368|ref|ZP_03110606.1| GIY-YIG catalytic domain [Bacillus cereus 03BB108]
 gi|206973526|ref|ZP_03234444.1| GIY-YIG catalytic domain protein [Bacillus cereus H3081.97]
 gi|217960161|ref|YP_002338721.1| GIY-YIG catalytic domain protein [Bacillus cereus AH187]
 gi|222096223|ref|YP_002530280.1| excinuclease abc, c subunit, n-terminal region [Bacillus cereus Q1]
 gi|225864688|ref|YP_002750066.1| GIY-YIG catalytic domain protein [Bacillus cereus 03BB102]
 gi|227814481|ref|YP_002814490.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. CDC 684]
 gi|228915318|ref|ZP_04078911.1| hypothetical protein bthur0012_25380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229091715|ref|ZP_04222916.1| hypothetical protein bcere0021_25200 [Bacillus cereus Rock3-42]
 gi|229139354|ref|ZP_04267925.1| hypothetical protein bcere0013_24640 [Bacillus cereus BDRD-ST26]
 gi|229196886|ref|ZP_04323627.1| hypothetical protein bcere0001_24410 [Bacillus cereus m1293]
 gi|229602644|ref|YP_002866994.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. A0248]
 gi|254685274|ref|ZP_05149134.1| GIY-YIG catalytic domain protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254722682|ref|ZP_05184470.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. A1055]
 gi|254737727|ref|ZP_05195430.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743096|ref|ZP_05200781.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. Kruger B]
 gi|254752042|ref|ZP_05204079.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. Vollum]
 gi|254760563|ref|ZP_05212587.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. Australia
           94]
 gi|301054235|ref|YP_003792446.1| excinuclease ABC subunit C N-terminal region [Bacillus anthracis
           CI]
 gi|30257315|gb|AAP26546.1| endo/excinuclease amino terminal domain protein [Bacillus anthracis
           str. Ames]
 gi|42737714|gb|AAS41646.1| endo/excinuclease amino terminal domain protein [Bacillus cereus
           ATCC 10987]
 gi|47503146|gb|AAT31822.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179456|gb|AAT54832.1| endo/excinuclease amino terminal domain protein [Bacillus anthracis
           str. Sterne]
 gi|49333234|gb|AAT63880.1| excinuclease ABC, C subunit, N-terminal region [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51976264|gb|AAU17814.1| excinuclease ABC, C subunit, N-terminal region [Bacillus cereus
           E33L]
 gi|118417305|gb|ABK85724.1| excinuclease ABC, C subunit, N-terminal region [Bacillus
           thuringiensis str. Al Hakam]
 gi|190563359|gb|EDV17324.1| GIY-YIG catalytic domain [Bacillus anthracis Tsiankovskii-I]
 gi|195995312|gb|EDX59266.1| GIY-YIG catalytic domain protein [Bacillus cereus W]
 gi|196025677|gb|EDX64346.1| GIY-YIG catalytic domain [Bacillus cereus 03BB108]
 gi|196026926|gb|EDX65553.1| GIY-YIG catalytic domain protein [Bacillus cereus NVH0597-99]
 gi|206747682|gb|EDZ59071.1| GIY-YIG catalytic domain protein [Bacillus cereus H3081.97]
 gi|217065808|gb|ACJ80058.1| GIY-YIG catalytic domain protein [Bacillus cereus AH187]
 gi|221240281|gb|ACM12991.1| excinuclease ABC, C subunit, N-terminal region [Bacillus cereus Q1]
 gi|225790001|gb|ACO30218.1| GIY-YIG catalytic domain protein [Bacillus cereus 03BB102]
 gi|227006494|gb|ACP16237.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. CDC 684]
 gi|228586609|gb|EEK44686.1| hypothetical protein bcere0001_24410 [Bacillus cereus m1293]
 gi|228643901|gb|EEL00162.1| hypothetical protein bcere0013_24640 [Bacillus cereus BDRD-ST26]
 gi|228691660|gb|EEL45412.1| hypothetical protein bcere0021_25200 [Bacillus cereus Rock3-42]
 gi|228844261|gb|EEM89319.1| hypothetical protein bthur0012_25380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229267052|gb|ACQ48689.1| GIY-YIG catalytic domain protein [Bacillus anthracis str. A0248]
 gi|300376404|gb|ADK05308.1| excinuclease ABC, C subunit, N-terminal region [Bacillus cereus
           biovar anthracis str. CI]
 gi|324326683|gb|ADY21943.1| excinuclease ABC subunit C N-terminal protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 126

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 47  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 105 IYETYIINEYKAKYNV 120


>gi|329116783|ref|ZP_08245500.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
 gi|326907188|gb|EGE54102.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
          Length = 654

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 541 AITTHRKRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           AIT      KK +   L     I  +G    R+LL+ FG ++ +  ++ E ++ I+G+  
Sbjct: 486 AITN----SKKNSADKLLFGLGIRHVGAKASRILLEEFGDIESLVEANQEEISQIDGLGT 541

Query: 598 KIACKIYNHFHKNTSH 613
            IA  I  +F K  + 
Sbjct: 542 VIAKSIARYFEKAEAQ 557


>gi|47570235|ref|ZP_00240887.1| UvrC-like protein [Bacillus cereus G9241]
 gi|228985809|ref|ZP_04145959.1| hypothetical protein bthur0001_24990 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229156297|ref|ZP_04284393.1| hypothetical protein bcere0010_24860 [Bacillus cereus ATCC 4342]
 gi|47553100|gb|EAL11499.1| UvrC-like protein [Bacillus cereus G9241]
 gi|228627172|gb|EEK83903.1| hypothetical protein bcere0010_24860 [Bacillus cereus ATCC 4342]
 gi|228773981|gb|EEM22397.1| hypothetical protein bthur0001_24990 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 126

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 47  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 105 IYETYIINEYKAKYNV 120


>gi|320334549|ref|YP_004171260.1| DNA ligase [Deinococcus maricopensis DSM 21211]
 gi|319755838|gb|ADV67595.1| DNA ligase [Deinococcus maricopensis DSM 21211]
          Length = 671

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 29/51 (56%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            G+G    ++L ++F ++  +  ++PE +ASI G+ + +A  ++   H  T
Sbjct: 515 PGVGERNAQVLTRAFPSLDALLAATPEQIASIHGVGETLAQSVHAALHDAT 565


>gi|297626017|ref|YP_003687780.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921782|emb|CBL56340.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 764

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I  +  E LA  +G+   IA  + + F
Sbjct: 567 SIRHVGPTAARALAARFGSMDAIRAAGVEELADTDGVGLIIAEAVRDWF 615


>gi|126658956|ref|ZP_01730098.1| hypothetical protein CY0110_26677 [Cyanothece sp. CCY0110]
 gi|126619754|gb|EAZ90481.1| hypothetical protein CY0110_26677 [Cyanothece sp. CCY0110]
          Length = 92

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 6  MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCT 65
          +P+  GVY+++D  G ++YVG++ N+ +R     + ++   +I         I +     
Sbjct: 10 LPKVSGVYKVIDGQGTIIYVGQSKNIYRRWN---NGHHILPKIIRECGDNTLIDWVEVP- 65

Query: 66 EVEALL--LEANMIKRLKPRFNIL 87
            E LL  +E   +   +P+FN  
Sbjct: 66 --EWLLNRVENMTVSFYQPKFNRK 87


>gi|119356312|ref|YP_910956.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
 gi|166215573|sp|A1BDQ5|DNLJ_CHLPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119353661|gb|ABL64532.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
          Length = 676

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 527 LYFIQRLRDEA---------H---RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS 574
           LY +Q+ + EA         H   R A+   R++  +     L  I  +G    R L ++
Sbjct: 483 LYLLQQPQLEALERMGRKSAHNLLR-ALQESREKSYERLLYAL-GIRHVGQATARELARA 540

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           + TV+ +  +S E LA++  +   +A  + ++F K+++ 
Sbjct: 541 YETVEALQNASEEELATVPDVGPVVAHSVKDYFSKSSTQ 579


>gi|320105506|ref|YP_004181096.1| NAD-dependent DNA ligase [Terriglobus saanensis SP1PR4]
 gi|319924027|gb|ADV81102.1| DNA ligase, NAD-dependent [Terriglobus saanensis SP1PR4]
          Length = 694

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 17/80 (21%)

Query: 550 KKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLASI 592
           +K+A S L EI               GI   G    + L + FG++  +  ++ E L  +
Sbjct: 519 QKSAESLLAEIEKSKSAPLSRVLLGLGIRHVGERTAQTLAEEFGSMDALISATEEDLTRV 578

Query: 593 EGISKKIACKIYNHFHKNTS 612
             +  K+A  I   F    +
Sbjct: 579 NDVGPKVAEAIREWFANEKN 598


>gi|242398676|ref|YP_002994100.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
           739]
 gi|242265069|gb|ACS89751.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
           739]
          Length = 772

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 29/109 (26%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK  +     E     + +AL L  R       QRL                       
Sbjct: 683 IAKREQEERKKEVAVRSEKKALTLADR-------QRL----------------------I 713

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++ +  +  +  R LL+ FG V+ +  +    L  +EGI +KIA +I  
Sbjct: 714 VEGLPNVSAVLARRLLKHFGNVERVFTAKESELIQVEGIGEKIAKEIRR 762


>gi|228946324|ref|ZP_04108651.1| hypothetical protein bthur0007_24710 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228813374|gb|EEM59668.1| hypothetical protein bthur0007_24710 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 126

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 47  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 105 IYETYIINEYKAKYNV 120


>gi|15603581|ref|NP_246655.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|81636517|sp|Q9CKA9|DNLJ_PASMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|12722128|gb|AAK03800.1| Lig [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 673

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +KA  + L        I  +G      L   F T++ +  ++ E L  ++ + + +A +I
Sbjct: 503 QKAKKTTLARFIFALGIREVGEATALNLANHFKTLEALKEATLEQLQEVQDVGEVVANRI 562

Query: 604 YNHFHK 609
           +  + +
Sbjct: 563 FVFWRE 568


>gi|156381869|ref|XP_001632278.1| predicted protein [Nematostella vectensis]
 gi|156219331|gb|EDO40215.1| predicted protein [Nematostella vectensis]
          Length = 229

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           KA    +  I G+G  +   LL+ F ++++ISR+S E ++ + G  K  A ++      +
Sbjct: 156 KALLGTVQSIPGLGQKKALALLKEFKSIEVISRASVEAMSRVVG--KACAEQVKTFIDNS 213


>gi|309800924|ref|ZP_07695056.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022]
 gi|308222460|gb|EFO78740.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022]
          Length = 885

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   R +  +FG++  I  +S E L++I+GI  +IA  +   F
Sbjct: 742 LGPPTARTIATAFGSLDAIEHASVEELSAIDGIGPEIAESVVTWF 786


>gi|306822599|ref|ZP_07455977.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679]
 gi|304554144|gb|EFM42053.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679]
          Length = 897

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   R +  +FG++  I  +S E L++I+GI  +IA  +   F
Sbjct: 742 LGPPTARTIATAFGSLDAIEHASVEELSAIDGIGPEIAESVVTWF 786


>gi|229018003|ref|ZP_04174879.1| hypothetical protein bcere0030_25370 [Bacillus cereus AH1273]
 gi|229024225|ref|ZP_04180687.1| hypothetical protein bcere0029_25470 [Bacillus cereus AH1272]
 gi|228737081|gb|EEL87614.1| hypothetical protein bcere0029_25470 [Bacillus cereus AH1272]
 gi|228743272|gb|EEL93396.1| hypothetical protein bcere0030_25370 [Bacillus cereus AH1273]
          Length = 126

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 47  GIFMFFNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 105 IYETYIINEYKAKYNV 120


>gi|171742735|ref|ZP_02918542.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC
           27678]
 gi|283456203|ref|YP_003360767.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1]
 gi|171278349|gb|EDT46010.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC
           27678]
 gi|283102837|gb|ADB09943.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1]
          Length = 897

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   R +  +FG++  I  +S E L++I+GI  +IA  +   F
Sbjct: 742 LGPPTARTIATAFGSLDAIEHASVEELSAIDGIGPEIAESVVTWF 786


>gi|291454298|ref|ZP_06593688.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
 gi|291357247|gb|EFE84149.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
          Length = 736

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 17/78 (21%)

Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           KK   + LD I             G     +GP+  + L + F +++ I  ++ E LA  
Sbjct: 542 KKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATEEELAQT 601

Query: 593 EGISKKIACKIYNHFHKN 610
           EG+   IA  + + F + 
Sbjct: 602 EGVGPTIAASLKSWFAEE 619


>gi|239982451|ref|ZP_04704975.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
          Length = 728

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 17/78 (21%)

Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           KK   + LD I             G     +GP+  + L + F +++ I  ++ E LA  
Sbjct: 534 KKNTLAMLDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATEEELAQT 593

Query: 593 EGISKKIACKIYNHFHKN 610
           EG+   IA  + + F + 
Sbjct: 594 EGVGPTIAASLKSWFAEE 611


>gi|170767420|ref|ZP_02901873.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
 gi|170123754|gb|EDS92685.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
          Length = 671

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATATGLAAYFGTLETLEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|206972506|ref|ZP_03233450.1| GIY-YIG catalytic domain protein [Bacillus cereus AH1134]
 gi|228958938|ref|ZP_04120641.1| hypothetical protein bthur0005_24330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229045400|ref|ZP_04192061.1| hypothetical protein bcere0027_24250 [Bacillus cereus AH676]
 gi|229079895|ref|ZP_04212427.1| hypothetical protein bcere0023_25470 [Bacillus cereus Rock4-2]
 gi|229128051|ref|ZP_04257033.1| hypothetical protein bcere0015_24970 [Bacillus cereus BDRD-Cer4]
 gi|229150916|ref|ZP_04279127.1| hypothetical protein bcere0011_24650 [Bacillus cereus m1550]
 gi|229161584|ref|ZP_04289564.1| hypothetical protein bcere0009_23700 [Bacillus cereus R309803]
 gi|229173366|ref|ZP_04300910.1| hypothetical protein bcere0006_24670 [Bacillus cereus MM3]
 gi|229178987|ref|ZP_04306345.1| hypothetical protein bcere0005_23410 [Bacillus cereus 172560W]
 gi|296503263|ref|YP_003664963.1| UvrC-like protein [Bacillus thuringiensis BMB171]
 gi|206732530|gb|EDZ49708.1| GIY-YIG catalytic domain protein [Bacillus cereus AH1134]
 gi|228604544|gb|EEK62007.1| hypothetical protein bcere0005_23410 [Bacillus cereus 172560W]
 gi|228610060|gb|EEK67338.1| hypothetical protein bcere0006_24670 [Bacillus cereus MM3]
 gi|228621829|gb|EEK78675.1| hypothetical protein bcere0009_23700 [Bacillus cereus R309803]
 gi|228632476|gb|EEK89094.1| hypothetical protein bcere0011_24650 [Bacillus cereus m1550]
 gi|228655326|gb|EEL11182.1| hypothetical protein bcere0015_24970 [Bacillus cereus BDRD-Cer4]
 gi|228703479|gb|EEL55933.1| hypothetical protein bcere0023_25470 [Bacillus cereus Rock4-2]
 gi|228724938|gb|EEL76234.1| hypothetical protein bcere0027_24250 [Bacillus cereus AH676]
 gi|228800777|gb|EEM47691.1| hypothetical protein bthur0005_24330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296324315|gb|ADH07243.1| UvrC-like protein [Bacillus thuringiensis BMB171]
          Length = 126

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 47  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 105 IYETYIINEYKAKYNV 120


>gi|165868948|ref|ZP_02213608.1| GIY-YIG catalytic domain [Bacillus anthracis str. A0488]
 gi|229184931|ref|ZP_04312122.1| hypothetical protein bcere0004_24890 [Bacillus cereus BGSC 6E1]
 gi|164715674|gb|EDR21191.1| GIY-YIG catalytic domain [Bacillus anthracis str. A0488]
 gi|228598584|gb|EEK56213.1| hypothetical protein bcere0004_24890 [Bacillus cereus BGSC 6E1]
          Length = 124

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 45  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 103 IYETYIINEYKAKYNV 118


>gi|328473436|gb|EGF44284.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus 10329]
          Length = 670

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I  ++ E L +++ I   +A  I   F +  +  
Sbjct: 521 VGEATAANLAQHFKSLEAIQAATEEQLIAVQDIGVVVAKHITTFFEEEQNQA 572


>gi|298245037|ref|ZP_06968843.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
 gi|297552518|gb|EFH86383.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
          Length = 700

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 541 AITTHRKRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           AI   ++R      S L     I  +G    +LL  +FG +  +  +S   +  + GI  
Sbjct: 523 AIEASKQR----PLSRLLFGLNIRYVGEKTAQLLADAFGDMDTLMAASEAQINEVPGIGP 578

Query: 598 KIACKIYNHFHKNTSHT 614
           KI   +   F +  +  
Sbjct: 579 KIGQSVAQWFQQEENQA 595


>gi|260363295|ref|ZP_05776162.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
 gi|308113593|gb|EFO51133.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
          Length = 655

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I  ++ E L +++ I   +A  I   F +  +  
Sbjct: 506 VGEATAANLAQHFKSLEAIQAATEEQLIAVQDIGVVVAKHITTFFEEEQNQA 557


>gi|28897574|ref|NP_797179.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878266|ref|ZP_05890621.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
 gi|260895418|ref|ZP_05903914.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
 gi|260903353|ref|ZP_05911748.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
 gi|81728289|sp|Q87RJ4|DNLJ_VIBPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28805786|dbj|BAC59063.1| DNA ligase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088617|gb|EFO38312.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
 gi|308090169|gb|EFO39864.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
 gi|308107994|gb|EFO45534.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
          Length = 670

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I  ++ E L +++ I   +A  I   F +  +  
Sbjct: 521 VGEATAANLAQHFKSLEAIQAATEEQLIAVQDIGVVVAKHITTFFEEEQNQA 572


>gi|229097228|ref|ZP_04228190.1| hypothetical protein bcere0020_24710 [Bacillus cereus Rock3-29]
 gi|229103314|ref|ZP_04233997.1| hypothetical protein bcere0019_24640 [Bacillus cereus Rock3-28]
 gi|229116224|ref|ZP_04245614.1| hypothetical protein bcere0017_25120 [Bacillus cereus Rock1-3]
 gi|228667056|gb|EEL22508.1| hypothetical protein bcere0017_25120 [Bacillus cereus Rock1-3]
 gi|228680153|gb|EEL34347.1| hypothetical protein bcere0019_24640 [Bacillus cereus Rock3-28]
 gi|228686039|gb|EEL39955.1| hypothetical protein bcere0020_24710 [Bacillus cereus Rock3-29]
          Length = 126

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 47  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 104

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 105 IYETYIINEYKAKYNV 120


>gi|269794376|ref|YP_003313831.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
 gi|269096561|gb|ACZ20997.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
          Length = 871

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 549 RKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           R+KA   PL        I  +GP   R L  +F +V+ I  ++ E LA+ EG+   IA  
Sbjct: 593 REKAKARPLWRVLVALSIRHVGPTAARALATAFESVEAIMAATEEELAATEGVGPTIARA 652

Query: 603 IYNHFHKNTSHTP 615
           +   F+  +S  P
Sbjct: 653 VRIWFNGRSSVEP 665


>gi|68536402|ref|YP_251107.1| NAD-dependent DNA ligase LigA [Corynebacterium jeikeium K411]
 gi|123748223|sp|Q4JUL8|DNLJ_CORJK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|68264001|emb|CAI37489.1| DNA ligase [Corynebacterium jeikeium K411]
          Length = 695

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L + F +V+ I+ +S E +A I+G+++ IA  I + F
Sbjct: 518 SIRHVGPTAAKALAKHFESVEDIASASAEEMAGIDGVAETIAESISDWF 566


>gi|291460667|ref|ZP_06600057.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291416626|gb|EFE90345.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 664

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 559 EINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I+GIG    RLL + F    ++  I  +  E L  ++GI + +A K+Y +FH  
Sbjct: 500 GIDGIGLANARLLCRHFHQELSL--IRGAEKEELLEVDGIGEVLAEKLYAYFHSE 552


>gi|257454409|ref|ZP_05619671.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
 gi|257448175|gb|EEV23156.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
          Length = 675

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 24/95 (25%)

Query: 540 FAITTHR-------KRRKKAAYSPLDEIN-----------------GIGPLRKRLLLQSF 575
           +A++ HR       K  +K+  + L  I                  G+G      L   F
Sbjct: 476 YALSKHRDALINLEKLGEKSVENMLAAIEKSKDTTLPRFIFALGIGGVGESTAMNLAMQF 535

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           G ++ +  +S E L     + +K A  I+  F   
Sbjct: 536 GDLQPLMAASIEALQKTPDVGEKTADSIFEFFRAE 570


>gi|121604718|ref|YP_982047.1| DNA ligase [Polaromonas naphthalenivorans CJ2]
 gi|166216226|sp|A1VN98|DNLJ_POLNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120593687|gb|ABM37126.1| DNA ligase, NAD-dependent [Polaromonas naphthalenivorans CJ2]
          Length = 707

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L + FG +  I  +S E L  +  +   +A  I 
Sbjct: 532 KSKQTTLPRFVFGLGIRHVGEATAKALARHFGQLDSIMDASEEQLLEVADVGPIVAKSIR 591

Query: 605 NHF 607
             F
Sbjct: 592 TFF 594


>gi|207857840|ref|YP_002244491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|254781409|sp|B5R3V4|DNLJ_SALEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206709643|emb|CAR33993.1| DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
          Length = 671

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQTATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|205353534|ref|YP_002227335.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|254781410|sp|B5RCP9|DNLJ_SALG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|205273315|emb|CAR38285.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326628629|gb|EGE34972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 671

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQTATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|168243193|ref|ZP_02668125.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449589|ref|YP_002046491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|254781411|sp|B4TCF6|DNLJ_SALHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194407893|gb|ACF68112.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205337689|gb|EDZ24453.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 671

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQTATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|198243638|ref|YP_002216496.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|254781408|sp|B5FQB9|DNLJ_SALDC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197938154|gb|ACH75487.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326624250|gb|EGE30595.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 671

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALQTATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|7673996|sp|O87703|DNLJ_BACST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3688229|emb|CAA09732.1| DNA ligase [Geobacillus stearothermophilus]
          Length = 670

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    +LL + F T++ + R++ E L ++  I +K+A  I   F
Sbjct: 514 VGAKAAQLLAEHFETMERLERATKEELMAVPEIGEKMADAITAFF 558


>gi|255526680|ref|ZP_05393584.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
 gi|296185600|ref|ZP_06854009.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
 gi|255509612|gb|EET85948.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
 gi|296049728|gb|EFG89153.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
          Length = 364

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L E   IG +  + LL+ F T K I  +  E L ++EGI +K A  I+N
Sbjct: 8   LSETPNIGDVIGKKLLEEFKTPKNIFDADKEELMNVEGIGEKTANLIFN 56


>gi|219882959|ref|YP_002478123.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
 gi|254778150|sp|B8HIQ9|DNLJ2_ARTCA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|219861965|gb|ACL42306.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
          Length = 701

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R L   FGT++ +  ++   LA++EGI +K A  I+    KN  
Sbjct: 544 RRLAAEFGTMEALQAATVSQLANVEGIGQKKAEVIHEQLKKNAP 587


>gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
           33392]
 gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
           33392]
          Length = 675

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T++ +  +  E L  +  + + +A +I   +H+
Sbjct: 528 VGEATALNLANHFKTLEALQNADLEALQQVPDVGEVVANRILAFWHE 574


>gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1]
          Length = 667

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T++ +  +  E L  +  + + +A +I   +H+
Sbjct: 520 VGEATALNLANHFKTLEALQNADLEALQQVPDVGEVVANRILAFWHE 566


>gi|289759140|ref|ZP_06518518.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium
           tuberculosis T85]
 gi|289714704|gb|EFD78716.1| LOW QUALITY PROTEIN: NAD-dependent DNA ligase LigA [Mycobacterium
           tuberculosis T85]
          Length = 449

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + LA++EG+   IA  +   F
Sbjct: 291 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 339


>gi|289751694|ref|ZP_06511072.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium
           tuberculosis T92]
 gi|289692281|gb|EFD59710.1| LOW QUALITY PROTEIN: DNA ligase [NAD dependent] ligA [Mycobacterium
           tuberculosis T92]
          Length = 409

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + LA++EG+   IA  +   F
Sbjct: 285 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 333


>gi|260202156|ref|ZP_05769647.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T46]
 gi|289444580|ref|ZP_06434324.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46]
 gi|289417499|gb|EFD14739.1| DNA ligase, NAD-dependent [Mycobacterium tuberculosis T46]
          Length = 517

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + LA++EG+   IA  +   F
Sbjct: 359 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 407


>gi|253797891|ref|YP_003030892.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435]
 gi|253319394|gb|ACT23997.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 1435]
          Length = 474

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + LA++EG+   IA  +   F
Sbjct: 316 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 364


>gi|228933990|ref|ZP_04096833.1| hypothetical protein bthur0009_24500 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825686|gb|EEM71476.1| hypothetical protein bthur0009_24500 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 124

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 45  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 103 IYETYIINEYKAKYNV 118


>gi|218754780|ref|ZP_03533576.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis GM 1503]
 gi|289763195|ref|ZP_06522573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
           1503]
 gi|289710701|gb|EFD74717.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
           1503]
          Length = 690

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + LA++EG+   IA  +   F
Sbjct: 532 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 580


>gi|215447287|ref|ZP_03434039.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T85]
          Length = 416

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + LA++EG+   IA  +   F
Sbjct: 258 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 306


>gi|215428469|ref|ZP_03426388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T92]
          Length = 411

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + LA++EG+   IA  +   F
Sbjct: 286 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 334


>gi|215405001|ref|ZP_03417182.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
 gi|289746820|ref|ZP_06506198.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
 gi|289687348|gb|EFD54836.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
          Length = 691

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + LA++EG+   IA  +   F
Sbjct: 533 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 581


>gi|308377195|ref|ZP_07441467.2| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
 gi|13882885|gb|AAK47423.1| DNA ligase [Mycobacterium tuberculosis CDC1551]
 gi|308348655|gb|EFP37506.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
          Length = 679

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + LA++EG+   IA  +   F
Sbjct: 521 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 569


>gi|254233094|ref|ZP_04926421.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C]
 gi|124602153|gb|EAY61163.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis C]
          Length = 495

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + LA++EG+   IA  +   F
Sbjct: 337 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 385


>gi|15610151|ref|NP_217530.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Rv]
 gi|31794191|ref|NP_856684.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis AF2122/97]
 gi|121638896|ref|YP_979120.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662865|ref|YP_001284388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
 gi|148824204|ref|YP_001288958.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis F11]
 gi|161350059|ref|NP_337609.2| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CDC1551]
 gi|167967816|ref|ZP_02550093.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
 gi|215431968|ref|ZP_03429887.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|219559049|ref|ZP_03538125.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T17]
 gi|224991388|ref|YP_002646077.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254365649|ref|ZP_04981694.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260188040|ref|ZP_05765514.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CPHL_A]
 gi|260206343|ref|ZP_05773834.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis K85]
 gi|289448688|ref|ZP_06438432.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
 gi|289553196|ref|ZP_06442406.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
 gi|289571216|ref|ZP_06451443.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
 gi|289575722|ref|ZP_06455949.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
 gi|289755132|ref|ZP_06514510.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|294993895|ref|ZP_06799586.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 210]
 gi|297635642|ref|ZP_06953422.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN 4207]
 gi|297732640|ref|ZP_06961758.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN R506]
 gi|306777310|ref|ZP_07415647.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
 gi|306785860|ref|ZP_07424182.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
 gi|306789901|ref|ZP_07428223.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
 gi|306794711|ref|ZP_07433013.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
 gi|306798954|ref|ZP_07437256.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
 gi|306969091|ref|ZP_07481752.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
 gi|306973427|ref|ZP_07486088.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
 gi|307081136|ref|ZP_07490306.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
 gi|307085740|ref|ZP_07494853.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
 gi|313659972|ref|ZP_07816852.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN
           V2475]
 gi|54036987|sp|P63973|DNLJ_MYCTU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|54036988|sp|P63974|DNLJ_MYCBO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215822|sp|A1KN09|DNLJ_MYCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216214|sp|A5U726|DNLJ_MYCTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781375|sp|C1AGD0|DNLJ_MYCBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2791611|emb|CAA16099.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
           SYNTHASE [NAD+]) [Mycobacterium tuberculosis H37Rv]
 gi|31619786|emb|CAD96726.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
           SYNTHASE [NAD+]) [Mycobacterium bovis AF2122/97]
 gi|121494544|emb|CAL73025.1| Probable dna ligase [nad dependent] ligA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134151162|gb|EBA43207.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507017|gb|ABQ74826.1| DNA ligase (NAD dependent) LigA [Mycobacterium tuberculosis H37Ra]
 gi|148722731|gb|ABR07356.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis F11]
 gi|224774503|dbj|BAH27309.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289421646|gb|EFD18847.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
 gi|289437828|gb|EFD20321.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
 gi|289540153|gb|EFD44731.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
 gi|289544970|gb|EFD48618.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
 gi|289695719|gb|EFD63148.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
 gi|308214358|gb|EFO73757.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
 gi|308329532|gb|EFP18383.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
 gi|308333670|gb|EFP22521.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
 gi|308337029|gb|EFP25880.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
 gi|308340842|gb|EFP29693.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
 gi|308353381|gb|EFP42232.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
 gi|308357226|gb|EFP46077.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
 gi|308361179|gb|EFP50030.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
 gi|308364771|gb|EFP53622.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
 gi|323718395|gb|EGB27569.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CDC1551A]
 gi|326904628|gb|EGE51561.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis W-148]
 gi|328457668|gb|AEB03091.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 4207]
          Length = 691

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + LA++EG+   IA  +   F
Sbjct: 533 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 581


>gi|218234864|ref|YP_002367432.1| GIY-YIG catalytic domain protein [Bacillus cereus B4264]
 gi|228908439|ref|ZP_04072282.1| hypothetical protein bthur0013_26000 [Bacillus thuringiensis IBL
           200]
 gi|229030393|ref|ZP_04186434.1| hypothetical protein bcere0028_24630 [Bacillus cereus AH1271]
 gi|229145287|ref|ZP_04273676.1| hypothetical protein bcere0012_24440 [Bacillus cereus BDRD-ST24]
 gi|229190801|ref|ZP_04317794.1| hypothetical protein bcere0002_24670 [Bacillus cereus ATCC 10876]
 gi|218162821|gb|ACK62813.1| GIY-YIG catalytic domain protein [Bacillus cereus B4264]
 gi|228592671|gb|EEK50497.1| hypothetical protein bcere0002_24670 [Bacillus cereus ATCC 10876]
 gi|228638126|gb|EEK94567.1| hypothetical protein bcere0012_24440 [Bacillus cereus BDRD-ST24]
 gi|228730918|gb|EEL81857.1| hypothetical protein bcere0028_24630 [Bacillus cereus AH1271]
 gi|228851230|gb|EEM96041.1| hypothetical protein bthur0013_26000 [Bacillus thuringiensis IBL
           200]
          Length = 124

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 45  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 103 IYETYIINEYKAKYNV 118


>gi|313888253|ref|ZP_07821924.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845656|gb|EFR33046.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 665

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 14/83 (16%)

Query: 542 ITTHRKRRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPE 587
           I   +++R     + ++               I  +G    R L   F +   +  S  E
Sbjct: 480 IEGFKEKRTNNLLNAIENSKKPHLSNFIYALGIPNVGIKTARDLADYFKSFDKLKNSQEE 539

Query: 588 TLASIEGISKKIACKIYNHFHKN 610
            L SI  I    A +I   FH +
Sbjct: 540 ELVSIGDIGNITAKEIVEFFHDD 562


>gi|256810024|ref|YP_003127393.1| ERCC4 domain protein [Methanocaldococcus fervens AG86]
 gi|256793224|gb|ACV23893.1| ERCC4 domain protein [Methanocaldococcus fervens AG86]
          Length = 767

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + +  +G      LL+ F TV+ +  +  E L  +EG+ K+ A KI    
Sbjct: 713 ESLPDVGGALADRLLKHFKTVENVFTAKEEELMKVEGVGKERAKKIREVL 762


>gi|311064086|ref|YP_003970811.1| NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
 gi|310866405|gb|ADP35774.1| LigA NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
          Length = 896

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  +FG+++ I ++  + L++I+GI  +IA  + N F
Sbjct: 739 LGPPTARLIASAFGSLEAIEQAGVDELSAIDGIGPEIAESVVNWF 783


>gi|224282769|ref|ZP_03646091.1| LigA [Bifidobacterium bifidum NCIMB 41171]
 gi|313139930|ref|ZP_07802123.1| LigA [Bifidobacterium bifidum NCIMB 41171]
 gi|313132440|gb|EFR50057.1| LigA [Bifidobacterium bifidum NCIMB 41171]
          Length = 900

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  +FG+++ I ++  + L++I+GI  +IA  + N F
Sbjct: 743 LGPPTARLIASAFGSLEAIEQAGVDELSAIDGIGPEIAESVVNWF 787


>gi|224064898|ref|XP_002187312.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 215

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           I G+G  +  LLLQ FG++  +  ++   L    G  +  A +IY   H
Sbjct: 168 IPGVGKTKALLLLQRFGSIHRLCNAAIHQLEQAVG--QTGAQQIYTFLH 214


>gi|169350953|ref|ZP_02867891.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
 gi|169292015|gb|EDS74148.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
          Length = 682

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + K    S L     I+ +G    + L++ F ++  +  +S   L  +  I    A  I 
Sbjct: 517 KSKNNDASKLLTSLGISNVGKSAAKNLMKKFKSIDNLMNASYAQLIEVNDIGDISAMAII 576

Query: 605 NHFHKNTS 612
           N+F    +
Sbjct: 577 NYFKNPDN 584


>gi|268325930|emb|CBH39518.1| putative ATP-dependent RNA helicase [uncultured archaeon]
          Length = 780

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           S L  I GI  +  R LL  F T++ I  +S E L  +E +  K A  I   F
Sbjct: 725 SALSNI-GI--MTTRKLLAKFKTIERIMAASKEELMEVENVGDKTAEHIKKVF 774


>gi|260219439|emb|CBA26284.1| DNA ligase [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 696

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L + FGT+  I  +  E L ++  +   +A  I 
Sbjct: 530 KSKQTTLPRFLFGLGIRHVGEATAKELARHFGTLDAIMEADEEALLAVSDVGPIVAQSIR 589

Query: 605 NHF 607
             F
Sbjct: 590 TFF 592


>gi|300709542|ref|YP_003735356.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3]
 gi|299123225|gb|ADJ13564.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3]
          Length = 703

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R L  +FG +  +  +S + L  ++ I + +A +I + F
Sbjct: 527 GIPHVGRATARELAGAFGDLDGLMDASEDELREVDEIGEVVAREIRDFF 575


>gi|15827911|ref|NP_302174.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae TN]
 gi|221230388|ref|YP_002503804.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae Br4923]
 gi|7674013|sp|O33102|DNLJ_MYCLE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781376|sp|B8ZS27|DNLJ_MYCLB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2414536|emb|CAB16425.1| DNA ligase [Mycobacterium leprae]
 gi|13093464|emb|CAC30658.1| DNA ligase [Mycobacterium leprae]
 gi|219933495|emb|CAR71800.1| DNA ligase [Mycobacterium leprae Br4923]
          Length = 694

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V  I  +SPE LA++EG+   IA  +   F
Sbjct: 533 SIRHVGPTAARALATEFGSVDAILAASPEQLAAVEGVGTTIAAAVTEWF 581


>gi|150015242|ref|YP_001307496.1| NAD-dependent DNA ligase LigA [Clostridium beijerinckii NCIMB 8052]
 gi|190359245|sp|A6LQB0|DNLJ_CLOB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149901707|gb|ABR32540.1| DNA ligase, NAD-dependent [Clostridium beijerinckii NCIMB 8052]
          Length = 663

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L+  F +++ +  ++ E L  ++ +   +A  +   F + 
Sbjct: 511 GIPNVGVKTAKDLVSRFESIEGLKNATFEELVGVQDVGDIVAQGVLAFFKEE 562


>gi|56418811|ref|YP_146129.1| NAD-dependent DNA ligase LigA [Geobacillus kaustophilus HTA426]
 gi|81348272|sp|Q5L3B9|DNLJ_GEOKA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56378653|dbj|BAD74561.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Geobacillus
           kaustophilus HTA426]
          Length = 670

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    +LL + F T++ + R++ E L ++  I +K+A  I   F
Sbjct: 514 VGAKAAQLLAEHFETMERLERATKEELMAVPEIGEKMADAITAFF 558


>gi|67612623|ref|XP_667238.1| excision repair cross-complementing rodent repair
           deficiency,complementation group 1 [Cryptosporidium
           hominis TU502]
 gi|54658355|gb|EAL37009.1| excision repair cross-complementing rodent repair
           deficiency,complementation group 1 [Cryptosporidium
           hominis]
          Length = 224

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPL 566
           +E     +  +  +      L    R+RD                     L  +  I   
Sbjct: 137 LETLKSHENSSSEIIRGGLSLDLFSRIRD--------------------ALSSLPRINKT 176

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
               LL+ FG++  +  +S E L+ I+GI    A  I   F
Sbjct: 177 DSENLLKHFGSISKVVNASEEELSKIQGIGPIKAKVISEVF 217


>gi|284165509|ref|YP_003403788.1| ribosomal protein L32e [Haloterrigena turkmenica DSM 5511]
 gi|284015164|gb|ADB61115.1| Ribosomal protein L32e [Haloterrigena turkmenica DSM 5511]
          Length = 236

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L++I+G+G  +   L  + F +++ I  +  + LA  EGI   +A +I  
Sbjct: 8   ELEDISGVGASKADALRDAGFESIEDIKEADQDDLAEAEGIGNALAARIKA 58


>gi|228953038|ref|ZP_04115099.1| hypothetical protein bthur0006_24270 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228806656|gb|EEM53214.1| hypothetical protein bthur0006_24270 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 124

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 45  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 103 IYETYIINEYKAKYNV 118


>gi|167044986|gb|ABZ09651.1| putative ERCC4 domain protein [uncultured marine crenarchaeote
           HF4000_APKG8G2]
          Length = 220

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +K   S L  + G+G      +L+ FGT   +  SS   L+ + G+ +  A  I      
Sbjct: 145 QKQQLSMLCSLPGVGEKTAIRMLEKFGTPLRVLSSSIIELSKVSGLGEARAKNIKKVLQA 204

Query: 610 NTSH 613
            + H
Sbjct: 205 QSKH 208


>gi|153838362|ref|ZP_01991029.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
 gi|149748221|gb|EDM59080.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
          Length = 670

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I  ++ E L +++ I   +A  I   F +  +  
Sbjct: 521 VGEATAANLAQHFKSLEAIQAATEEQLIAVQDIGVVVAKHITTFFEEEKNQA 572


>gi|310287227|ref|YP_003938485.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17]
 gi|309251163|gb|ADO52911.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17]
          Length = 900

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  +FG++  I ++  + L++I+GI  +IA  + N F
Sbjct: 743 LGPPTARLIASAFGSLDAIEQAGVDELSAIDGIGPEIAESVVNWF 787


>gi|261403123|ref|YP_003247347.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261370116|gb|ACX72865.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 783

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + +  +G      LL+ F TV+ +  +  E L  ++G+ K+ A KI    
Sbjct: 729 ESLPDVGGALAERLLKHFKTVENVFTAKEEELMKVDGVGKERAKKIREVL 778


>gi|163841673|ref|YP_001626078.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
 gi|190359277|sp|A9WTZ3|DNLJ_RENSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|162955149|gb|ABY24664.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
          Length = 758

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   R L  +FG++  I  +S   LA ++G+   IA  +   F ++
Sbjct: 586 SIRHVGPTASRALATAFGSMAAIRAASEPELAEVDGVGPTIAAALIEWFAED 637


>gi|226365931|ref|YP_002783714.1| NAD-dependent DNA ligase LigA [Rhodococcus opacus B4]
 gi|254781403|sp|C1B1S4|DNLJ_RHOOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226244421|dbj|BAH54769.1| NAD(+)-dependent DNA ligase [Rhodococcus opacus B4]
          Length = 697

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I  SS E LA+++G+   IA  +   F
Sbjct: 535 SIRHVGPTAARALAGEFGSLDRIRESSVEELAAVDGVGGTIAAAVAEWF 583


>gi|238895883|ref|YP_002920619.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae NTUH-K2044]
 gi|238548201|dbj|BAH64552.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 671

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ + +++ E L  +  +   +A   +N F + ++
Sbjct: 520 VGEATAAGLAAHFGTLEALEQATIEELQKVPDVGIVVATHTFNFFAEESN 569


>gi|114319842|ref|YP_741525.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312282|sp|Q0AAV2|DNLJ_ALHEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114226236|gb|ABI56035.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
          Length = 673

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA  + L        I  +G +  R L + FG+++ I  +    LA    +   +A  I 
Sbjct: 503 KARRTTLPRFLYALGIQHVGEVTARRLAEHFGSLEAIMNADESALAETPDVGPVVAQAIA 562

Query: 605 NHFHK 609
           + F +
Sbjct: 563 HFFAE 567


>gi|300521550|gb|ADK25986.1| ERCC4-type nuclease [Candidatus Nitrososphaera gargensis]
          Length = 244

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            S L  + G+G      +L+ F T K    +S   LA+I G     A ++    
Sbjct: 170 LSVLSSVPGVGEKLAARMLEKFHTPKRALNASVAELATIPGFGLARAERVRKVL 223


>gi|134102614|ref|YP_001108275.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004701|ref|ZP_06562674.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
           2338]
 gi|166216238|sp|A4FMS5|DNLJ_SACEN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|133915237|emb|CAM05350.1| DNA ligase, NAD-dependent [Saccharopolyspora erythraea NRRL 2338]
          Length = 727

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R+L + FG++  I  +S E LA+ EG+   IA  +   F
Sbjct: 562 SIRHVGPIAARVLAREFGSLDRIQEASEEELAAGEGVGPTIATAVREWF 610


>gi|15920650|ref|NP_376319.1| hypothetical protein ST0439 [Sulfolobus tokodaii str. 7]
 gi|15621433|dbj|BAB65428.1| 232aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 232

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             IG      LL+ FG+++ I  +S   L  +   S+K A +IY   H
Sbjct: 163 PQIGSKLAERLLEKFGSIERICNASVSELEKVLE-SRKKAEEIYKVIH 209


>gi|169630426|ref|YP_001704075.1| NAD-dependent DNA ligase LigA [Mycobacterium abscessus ATCC 19977]
 gi|254781373|sp|B1MDV2|DNLJ_MYCA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169242393|emb|CAM63421.1| DNA ligase (polydeoxyribonucleotide synthase NAD+) [Mycobacterium
           abscessus]
          Length = 681

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG ++ I  +S E LA++EG+   IA  + + F
Sbjct: 525 SIRHVGPTAARALATEFGDLEAIEGASVEQLAAVEGVGATIAAAVVDWF 573


>gi|326693831|ref|ZP_08230836.1| DNA ligase, NAD-dependent [Leuconostoc argentinum KCTC 3773]
          Length = 681

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNT 611
           +G    RL+ + F T+  I+ ++   +ASI+GI + IA  I  +F H  +
Sbjct: 526 VGAKAARLVAEKFKTLSAIAEATVPEIASIDGIGEAIAQSIVQYFSHPES 575


>gi|32398840|emb|CAD98550.1| excision repair cross-complementing rodent repair
           deficiency,complementation group 1, possible
           [Cryptosporidium parvum]
          Length = 224

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPL 566
           +E     +  +  +      L    R+RD                     L  +  I   
Sbjct: 137 LETLKSHENSSSEIIRGGLSLDLFSRIRD--------------------ALSSLPRINKT 176

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
               LL+ FG++  +  +S E L+ I+GI    A  I   F
Sbjct: 177 DSENLLKHFGSISKVVNASEEELSKIQGIGPIKAKVISEIF 217


>gi|237738042|ref|ZP_04568523.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817]
 gi|229419922|gb|EEO34969.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817]
          Length = 663

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    +LL  S G +  +   S E L  IEGI  K+A  I++ F    
Sbjct: 505 GIPFVGKTSAKLLADSSGNIDKLMSMSVEELMEIEGIGDKMAQAIFDFFRDEE 557


>gi|294498770|ref|YP_003562470.1| GIY-YIG catalytic domain-containing protein [Bacillus megaterium QM
           B1551]
 gi|294348707|gb|ADE69036.1| GIY-YIG catalytic domain protein [Bacillus megaterium QM B1551]
          Length = 266

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           Q+P  PG+Y   D  GR+LY+G    +L +R+++++     ++       +I  + +   
Sbjct: 24  QLPSAPGIYFFFDKPGRLLYIGTTTGSLLERVRAHVAGKGVSN-TKKFHKEIYAVGYIEV 82

Query: 64  CT---EVEALLLEANMIKRLKPRFNIL 87
                E++  +L   ++    P++N  
Sbjct: 83  HGLKKELD--MLRTMLVNGYFPKYNKQ 107


>gi|160895209|ref|ZP_02075981.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50]
 gi|156863088|gb|EDO56519.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50]
          Length = 653

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 559 EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I G+G    +L+ + F   +  I  +  E    I+GI   IA +I  +F   ++
Sbjct: 500 GIPGVGDATAKLICKHFKNNLDQIMHADVEAYTEIDGIGTVIAEEIVRYFKNPSN 554


>gi|290957204|ref|YP_003488386.1| DNA ligase [Streptomyces scabiei 87.22]
 gi|260646730|emb|CBG69827.1| putative DNA ligase [Streptomyces scabiei 87.22]
          Length = 739

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTV 578
             +   L  +Q++ +EA           + +     L    I  +GP+  + L + F ++
Sbjct: 543 EPKKNTLALLQKI-EEA-----------KSRPLARFLNGLSIRHVGPVAAQALAREFRSI 590

Query: 579 KMISRSSPETLASIEGISKKIACKIYNHFHKN 610
             I +++ E L +++G+   +A  +   F + 
Sbjct: 591 DRIEQATQEELTAVDGVGAIVAKALEEWFAEE 622


>gi|120434999|ref|YP_860685.1| DNA ligase [Gramella forsetii KT0803]
 gi|166215777|sp|A0LZ23|DNLJ_GRAFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117577149|emb|CAL65618.1| DNA ligase [Gramella forsetii KT0803]
          Length = 664

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L + F +++ +  +S E L +I+ I ++IA  +   F+   +
Sbjct: 514 VGETVAKKLAKHFKSIEALMAASEEELVNIDEIGERIAWSVVEFFNIEAN 563


>gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herbaspirillum seropedicae SmR1]
 gi|300074267|gb|ADJ63666.1| NAD-dependent DNA ligase (contains BRCT domain type II) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 688

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L        I  +G    + L + FG +  I  +S   L  +  +   +A  I
Sbjct: 516 QKSKSTTLARFIYALGIRHVGEATAKELARHFGGLDKILAASEAQLLEVADVGPVVATSI 575

Query: 604 YNHF 607
            + F
Sbjct: 576 RSFF 579


>gi|254556107|ref|YP_003062524.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
 gi|300766626|ref|ZP_07076543.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180104|ref|YP_003924232.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|254045034|gb|ACT61827.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
 gi|300495726|gb|EFK30877.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045595|gb|ADN98138.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 679

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R  +    L    I  +G    RL+ Q FGT++ +  +S E +A+I+ +   IA  +  +
Sbjct: 506 RDNSLERLLFGLGIRHVGAKVARLIAQHFGTIEALMAASQEEIAAIDSMGDVIANAVVQY 565

Query: 607 FHKNTSHT 614
           F  +  HT
Sbjct: 566 FESDEVHT 573


>gi|28377923|ref|NP_784815.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
 gi|81631729|sp|Q88XQ0|DNLJ_LACPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28270757|emb|CAD63662.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
          Length = 679

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R  +    L    I  +G    RL+ Q FGT++ +  +S E +A+I+ +   IA  +  +
Sbjct: 506 RDNSLERLLFGLGIRHVGAKVARLIAQHFGTIEALMAASQEEIAAIDSMGDVIANAVVQY 565

Query: 607 FHKNTSHT 614
           F  +  HT
Sbjct: 566 FESDEVHT 573


>gi|330445331|ref|ZP_08308983.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489522|dbj|GAA03480.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 671

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T++ IS+++ E L  +  +   +A  I+N F + 
Sbjct: 521 VGEATAANLANYFETLEAISQATKEQLIEVPDVGDVVAAHIFNFFREE 568


>gi|253701546|ref|YP_003022735.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
 gi|251776396|gb|ACT18977.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
          Length = 668

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K+   S L     I  +G    +LL  +FG+++ ++ +S E L SI  +  ++A  I + 
Sbjct: 506 KERELSRLIFALGIRHVGEHTAKLLAGAFGSMENLAAASEEELTSIREVGPQVAASIADF 565

Query: 607 FHKNTS 612
           F    +
Sbjct: 566 FKSEEN 571


>gi|325955534|ref|YP_004239194.1| DNA ligase [Weeksella virosa DSM 16922]
 gi|323438152|gb|ADX68616.1| DNA ligase [Weeksella virosa DSM 16922]
          Length = 663

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   FGT++ + +++ + L  +E I +KIA  I  +F K  
Sbjct: 509 GIRHVGNTVAKKLALHFGTMESLKKATYDELILVEDIGEKIAQSIIAYFDKEE 561


>gi|171914081|ref|ZP_02929551.1| DNA ligase, NAD-dependent [Verrucomicrobium spinosum DSM 4136]
          Length = 669

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +G    R L+  FG V  ++R+S E L  ++ I   +A  I+  F 
Sbjct: 522 VGASSARSLMDHFGAVDALARASVEDLLKVQDIGGIVAQSIHGWFQ 567


>gi|87307031|ref|ZP_01089177.1| DNA processing chain A [Blastopirellula marina DSM 3645]
 gi|87290404|gb|EAQ82292.1| DNA processing chain A [Blastopirellula marina DSM 3645]
          Length = 407

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           R K     L  ++G+GP   ++LL+ FGT   +  ++   L  + G+  K++ KI
Sbjct: 45  RAKLR---LALVSGVGPRTSQVLLERFGTHAGVLAATRSELERVSGVGPKLSQKI 96


>gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
 gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
          Length = 375

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYV-GKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           E+ P+  GVY + D  G +LY+ G   ++++ +  +    +   R   +      +RF  
Sbjct: 192 EEAPDSVGVYYLYDKDGNLLYLDGT-RDMKRSLNRHFTGESPHSR--ALRKLTREVRFEK 248

Query: 63  TCTEVEALLLEANMIKRLKPRF 84
           T +E+ A L     ++  KP +
Sbjct: 249 TGSELIARLKAFAEVRENKPSY 270


>gi|227498227|ref|ZP_03928396.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
 gi|226832370|gb|EEH64753.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
          Length = 827

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           +GP   R L   FG+++ + ++S + L+ ++G+   IA
Sbjct: 669 VGPTAARALAARFGSLEALRQASLDELSQVDGVGPTIA 706


>gi|158319601|ref|YP_001512108.1| NAD-dependent DNA ligase LigA [Alkaliphilus oremlandii OhILAs]
 gi|190359226|sp|A8MLJ8|DNLJ_ALKOO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158139800|gb|ABW18112.1| DNA ligase, NAD-dependent [Alkaliphilus oremlandii OhILAs]
          Length = 661

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 20/53 (37%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G      L + + + + I  +  + L ++  +   +A  I + F    
Sbjct: 504 GIPNVGRKTATDLAKHYKSFQAIQEAEFQELITLPDVGDIVAQSIIDFFEDEE 556


>gi|238026897|ref|YP_002911128.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
 gi|237876091|gb|ACR28424.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
          Length = 747

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G    + L + FG ++ I  +S + L  +  +   +A  ++
Sbjct: 576 KARHTTLARFIYALGIRHVGESTAKDLAKHFGALQPIMDASIDALLEVNDVGPVVAESLH 635

Query: 605 NHFHKNTSHT 614
             F +  + T
Sbjct: 636 QFFAEEHNRT 645


>gi|328885211|emb|CCA58450.1| DNA ligase [Streptomyces venezuelae ATCC 10712]
          Length = 726

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP+    L + F +++ I ++S E LA+++G+   IA  +   F + 
Sbjct: 558 SIRHVGPVAAEALAREFRSLERIEQASEEELAAVDGVGGIIAAAVKQWFSEE 609


>gi|91216495|ref|ZP_01253461.1| DNA ligase [Psychroflexus torquis ATCC 700755]
 gi|91185289|gb|EAS71666.1| DNA ligase [Psychroflexus torquis ATCC 700755]
          Length = 667

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 30/50 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L+++F ++ +++ +S E L +++ I ++IA  + + F  + +
Sbjct: 516 VGETVAKKLVKAFKSIDVLASASLENLVAVDEIGERIAQSVVDFFKDDAN 565


>gi|74312947|ref|YP_311366.1| NAD-dependent DNA ligase LigA [Shigella sonnei Ss046]
 gi|123732314|sp|Q3YZD1|DNLJ_SHISS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|73856424|gb|AAZ89131.1| DNA ligase [Shigella sonnei Ss046]
 gi|323169148|gb|EFZ54825.1| DNA ligase, NAD-dependent [Shigella sonnei 53G]
          Length = 671

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++++  +S E L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEVLEAASIEELQKVPDVGIVVASHVHNFFAEESN 569


>gi|237733138|ref|ZP_04563619.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383820|gb|EEO33911.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 664

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           K   S    I+ +G    + L++ F ++  + ++S   L  +  I    A  I N+F   
Sbjct: 507 KLLTS--LGISNVGKSAAKSLMKKFKSIDNLMKASYAQLIEVNDIGDISAMAIINYFKNP 564

Query: 611 TSHT 614
            +  
Sbjct: 565 DNQA 568


>gi|218439827|ref|YP_002378156.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
 gi|254781306|sp|B7K8U0|DNLJ_CYAP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218172555|gb|ACK71288.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
          Length = 678

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G +  +LL  +F +V+ +S++S  +L S+ GI  +IA  +Y+ F    + T
Sbjct: 523 VGSVTAKLLSDNFKSVEQLSQASFTSLESVYGIGAEIAQSVYDWFKIEANQT 574


>gi|291166519|gb|EFE28565.1| DNA ligase, NAD-dependent [Filifactor alocis ATCC 35896]
          Length = 668

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           I   + R        L  I+ +G    ++L ++F +++ + +++ + L  IE I  K A 
Sbjct: 498 INHSKSRNLNQLLVAL-GIDFVGEKAAKVLSKNFSSLEELEKANLDDLMRIEEIGLKTAQ 556

Query: 602 KIYNHFHKNTSHT 614
            I N+F    +  
Sbjct: 557 SILNYFQLEENRA 569


>gi|167756540|ref|ZP_02428667.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
 gi|167702715|gb|EDS17294.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
          Length = 664

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           K   S    I+ +G    + L++ F ++  + ++S   L  +  I    A  I N+F   
Sbjct: 507 KLLTS--LGISNVGKSAAKSLMKKFKSIDNLMKASYAQLIEVNDIGDISAMAIINYFKNP 564

Query: 611 TSHT 614
            +  
Sbjct: 565 DNQA 568


>gi|66475596|ref|XP_627614.1| ERCC1 excision repair 1; C-terminal HhH domain [Cryptosporidium
           parvum Iowa II]
 gi|46229292|gb|EAK90141.1| ERCC1 excision repair 1; C-terminal HhH domain [Cryptosporidium
           parvum Iowa II]
          Length = 240

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 507 MEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPL 566
           +E     +  +  +      L    R+RD                     L  +  I   
Sbjct: 153 LETLKSHENSSSEIIRGGLSLDLFSRIRD--------------------ALSSLPRINKT 192

Query: 567 RKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
               LL+ FG++  +  +S E L+ I+GI    A  I   F
Sbjct: 193 DSENLLKHFGSISKVVNASEEELSKIQGIGPIKAKVISEIF 233


>gi|229110153|ref|ZP_04239729.1| hypothetical protein bcere0018_24080 [Bacillus cereus Rock1-15]
 gi|228673345|gb|EEL28613.1| hypothetical protein bcere0018_24080 [Bacillus cereus Rock1-15]
          Length = 124

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 45  GIFMFYNINDDLLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 103 IYETYIINEYKAKYNV 118


>gi|116748867|ref|YP_845554.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
 gi|116697931|gb|ABK17119.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
          Length = 694

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    RLL + FGT+  + R+S E L S+ G+ + +A  + ++F
Sbjct: 544 VGSHVARLLAERFGTLDAVRRASVEELMSVNGVGEVVARSVVHYF 588


>gi|166216279|sp|A0LI67|DNLJ_SYNFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 675

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    RLL + FGT+  + R+S E L S+ G+ + +A  + ++F
Sbjct: 525 VGSHVARLLAERFGTLDAVRRASVEELMSVNGVGEVVARSVVHYF 569


>gi|333030674|ref|ZP_08458735.1| DNA ligase [Bacteroides coprosuis DSM 18011]
 gi|332741271|gb|EGJ71753.1| DNA ligase [Bacteroides coprosuis DSM 18011]
          Length = 667

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L ++F  +  ++++S E L SI+ I +KIA  I N+F K  +
Sbjct: 517 VGETVAKKLAKAFKNIGDLAKASQEELISIDEIGEKIAESIINYFSKEEN 566


>gi|229843861|ref|ZP_04464002.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
 gi|229812855|gb|EEP48543.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
          Length = 670

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 20/47 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  +  + L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLDALKEADLDQLQQVPDVGEVVANRIFIFWRE 567


>gi|225873424|ref|YP_002754883.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
 gi|254781243|sp|C1F7S7|DNLJ_ACIC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225792636|gb|ACO32726.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
          Length = 677

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  +PLD       I  +G    + L + +G++  + ++S E L  +  +  +++  I 
Sbjct: 509 KSRQAPLDRVLFGLGIRFVGERTAQALAEEYGSMDALMQASREELERVNDVGPRVSEAIR 568

Query: 605 NHFHK 609
             F +
Sbjct: 569 EFFDE 573


>gi|110637718|ref|YP_677925.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354667|sp|Q11VI1|DNLJ_CYTH3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110280399|gb|ABG58585.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
          Length = 670

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 554 YSPLDEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            S L  I GI   G      L   F ++  + ++S E L     I  KIA  I   F
Sbjct: 507 KSVLFAI-GIRYVGSTVAEKLALHFKSINALEKASIEELLQAPEIGIKIAQSIIEWF 562


>gi|302390293|ref|YP_003826114.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
 gi|302200921|gb|ADL08491.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
          Length = 672

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 26/119 (21%)

Query: 504 SAGMEKFFVKKGEALVLNM---RDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLD-- 558
               + +++K+ + + L     +      +  + +E+         K+R      PLD  
Sbjct: 470 KDAADLYYLKREDLVPLERMGEKSAA-NLLAAI-EES---------KKR------PLDRL 512

Query: 559 ----EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
                I  +G     LL ++F ++  + ++  E L  +  I  KIA  I   F +  ++
Sbjct: 513 IYALGIPFVGSRTASLLAEAFSSIDDLQKAKYEDLIKVPEIGDKIAQSILAFFRQEQTN 571


>gi|226310273|ref|YP_002770167.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
 gi|254781268|sp|C0Z4D6|DNLJ_BREBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226093221|dbj|BAH41663.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
          Length = 671

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    R+L + FG +  I ++S E +  I+ I  K+A  + N+F
Sbjct: 518 VGAKAARVLAEHFGNIDTIMQASEEEITQIDEIGPKMAASLVNYF 562


>gi|160945211|ref|ZP_02092437.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442942|gb|EDP19947.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
           M21/2]
          Length = 671

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 541 AITTHRKRRKKAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           AIT        +  + LD+      I  IG     LL + FGT++ I  ++ E ++ I+G
Sbjct: 495 AITA-------SKQNNLDKLLFGFGIRNIGDKAAALLAEHFGTLQAIREATAEQVSQIDG 547

Query: 595 ISKKIACKIYNHFHKN 610
               +A  +   F K 
Sbjct: 548 FGGVMAQSVVEFFAKE 563


>gi|315426483|dbj|BAJ48115.1| helicase [Candidatus Caldiarchaeum subterraneum]
 gi|315426513|dbj|BAJ48144.1| helicase [Candidatus Caldiarchaeum subterraneum]
          Length = 711

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIY 604
           PL  + G+G +R R L  + + T++ + R+S E LA +  I  +IA  I 
Sbjct: 659 PLVSLKGVGRVRARNLYNAGYRTIEDLRRASAEELAQVPSIGPRIAASIK 708


>gi|302387645|ref|YP_003823467.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
 gi|302198273|gb|ADL05844.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
          Length = 654

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACK 602
           KKA+++ L        I GIG    ++L Q F +    + ++  E L ++ GI K +A  
Sbjct: 482 KKASHTTLPRLIYGLGIAGIGLANAKMLCQEFKSDFGKMRKAEEEELTAVPGIGKVLADA 541

Query: 603 IYNHFHKNTSH 613
              +F +  ++
Sbjct: 542 WITYFKEEKNN 552


>gi|313679715|ref|YP_004057454.1| DNA ligase, nad-dependent [Oceanithermus profundus DSM 14977]
 gi|313152430|gb|ADR36281.1| DNA ligase, NAD-dependent [Oceanithermus profundus DSM 14977]
          Length = 670

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R L + FGT++ +  +  E L ++  +    A +I    
Sbjct: 514 GIPQVGEALARTLARRFGTIEKLMEAGEEELEAVPDVGPVTAAEIRRAL 562


>gi|167044514|gb|ABZ09189.1| putative ERCC4 domain protein [uncultured marine crenarchaeote
           HF4000_APKG6J21]
          Length = 228

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +K   S L  + G+G      +L+ FGT   +  SS   L+ + G+ +  A  I      
Sbjct: 153 QKQQLSMLCSLPGVGEKTAVRMLEKFGTPLRVLSSSIIELSKVSGLGEARAKNIKKVLQA 212

Query: 610 NTSH 613
            + H
Sbjct: 213 QSKH 216


>gi|302524940|ref|ZP_07277282.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
 gi|302433835|gb|EFL05651.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
          Length = 707

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L + FG+++ I  ++ E LA ++G+   IA  +   F
Sbjct: 532 SIRHVGPTAAQALAREFGSLQRIEDTTEEELADVDGVGPTIAHAVQEWF 580


>gi|213963472|ref|ZP_03391726.1| SMF family protein [Capnocytophaga sputigena Capno]
 gi|213953880|gb|EEB65208.1| SMF family protein [Capnocytophaga sputigena Capno]
          Length = 364

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN--HFHKNTSH 613
            L +I  IG +  + L+  FG+ K I      +L  + GI  KI   I N  +  +  + 
Sbjct: 10  ALKKIPLIGDITAKKLIAHFGSAKNIFAQRRSSLEKVMGIGSKITQNILNSQYLQEAETE 69


>gi|209364099|ref|YP_001424866.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
 gi|207082032|gb|ABS76887.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
          Length = 673

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G    R L + F  + ++ ++S ETL  I  I   +A  I+
Sbjct: 508 KSKKTTLPRFLYALGIRGVGDTIARTLARHFHELDLLMKASIETLQEIRDIGPVVAENIH 567

Query: 605 NHFHK 609
             FH+
Sbjct: 568 AFFHQ 572


>gi|167045230|gb|ABZ09890.1| putative ERCC4 domain protein [uncultured marine crenarchaeote
           HF4000_APKG8O8]
          Length = 243

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY----- 604
           +K   S L  + G+G      +L+ FGT   +  SS   L+ I G+ +  A KI      
Sbjct: 168 QKQQLSVLCSLPGVGEKTAIRMLEKFGTPLKVFSSSTTELSKISGLGETRAKKIKKMLQV 227

Query: 605 --NHFHKNTSHT 614
              H  KN+  T
Sbjct: 228 QSKHLKKNSQKT 239


>gi|57641267|ref|YP_183745.1| RNA helicase Ski2-like protein [Thermococcus kodakarensis KOD1]
 gi|68052052|sp|Q5JGV6|HELS_PYRKO RecName: Full=Putative ski2-type helicase; Contains: RecName:
            Full=Endonuclease PI-PkoHel; AltName: Full=Pko Hel intein
 gi|57159591|dbj|BAD85521.1| RNA helicase Ski2 homolog [Thermococcus kodakarensis KOD1]
          Length = 1125

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 11/81 (13%)

Query: 530  IQRLRDEAHRFAITTHRKRRKKAAYSPLD--EINGIGPLRKRLLLQS-FGTVKMISRSSP 586
            +Q LRD         H + R       L+  ++  IG  R R L  + F +V+ I R+ P
Sbjct: 1029 LQYLRD--------LHLRLRHGVREELLELVKLPNIGRRRARALYNAGFRSVEDILRAKP 1080

Query: 587  ETLASIEGISKKIACKIYNHF 607
            + L  +EGI  KI   IY H 
Sbjct: 1081 KDLLQVEGIGLKIIEGIYRHL 1101


>gi|56460801|ref|YP_156082.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
 gi|81362279|sp|Q5QUK1|DNLJ_IDILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56179811|gb|AAV82533.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
          Length = 670

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 17/47 (36%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F  +  +  +  E L  +  +   +A  I   FH+
Sbjct: 521 VGEATANALANHFKNLDALIAAESEQLQEVPDVGAVVAKHIVAFFHE 567


>gi|50084060|ref|YP_045570.1| DNA ligase [Acinetobacter sp. ADP1]
 gi|81393600|sp|Q6FDW0|DNLJ_ACIAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49530036|emb|CAG67748.1| DNA ligase [Acinetobacter sp. ADP1]
          Length = 676

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T+  + ++  E L     +    A  IY+ F
Sbjct: 522 GIRGVGETTARMLANTFQTLDALKQADIEALKKTPDVGDITAEWIYDFF 570


>gi|322368028|ref|ZP_08042597.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
 gi|320552044|gb|EFW93689.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
          Length = 806

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            I  IGP+  R LL  F TV+ +  +S + L   EG+ +  A +I  
Sbjct: 752 SIADIGPVTARALLSEFETVQAVMTASKDDLMETEGVGEITADRIRE 798


>gi|78042711|ref|YP_361151.1| DNA integrity scanning protein DisA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|119365931|sp|Q3A9N3|DISA_CARHZ RecName: Full=DNA integrity scanning protein disA
 gi|77994826|gb|ABB13725.1| putative DNA-binding protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 352

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            LD+I  +       L+Q+FG +K I  +S E L  +EGI +  A  I     K
Sbjct: 290 ILDKIPRLPVAVIENLVQTFGNLKNIMSASIEELDDVEGIGEVRARSIKEGLKK 343


>gi|190359248|sp|A9KCS0|DNLJ_COXBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 670

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I G+G    R L + F  + ++ ++S ETL  I  I   +A  I+
Sbjct: 505 KSKKTTLPRFLYALGIRGVGDTIARTLARHFHELDLLMKASIETLQEIRDIGPVVAENIH 564

Query: 605 NHFHK 609
             FH+
Sbjct: 565 AFFHQ 569


>gi|291299865|ref|YP_003511143.1| DNA ligase NAD-dependent [Stackebrandtia nassauensis DSM 44728]
 gi|290569085|gb|ADD42050.1| DNA ligase, NAD-dependent [Stackebrandtia nassauensis DSM 44728]
          Length = 749

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP+  R L   FG +  I  +  E LA+++G+   IA  +   F ++
Sbjct: 585 SIRHVGPVAARALATEFGDLDAIRDADEERLAAVDGVGPTIATAVKQWFAED 636


>gi|289522353|ref|ZP_06439207.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504189|gb|EFD25353.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 674

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K    S L     I  +G     +L + F ++  ++++  + L+ I GI  +IA  I   
Sbjct: 503 KNRPLSRLIYALGIRYVGSRTAEILAERFKSMDNLAKADIQDLSDIPGIGPQIASSIVAF 562

Query: 607 FHKNTS 612
           F    +
Sbjct: 563 FRDEKN 568



 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +I G+G      L+     G    + +   E L S++ +  K A K+ N  + + +  
Sbjct: 449 DIKGLGEKIIEQLVDKKMIGGFADLYKLKKEDLISLDRMGPKSAEKLINAINSSKNRP 506


>gi|261868202|ref|YP_003256124.1| NAD-dependent DNA ligase LigA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413534|gb|ACX82905.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 670

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T++ +  +  E L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLEALQNADLEQLQQVPDVGEVVANRIFVFWRE 567


>gi|329766291|ref|ZP_08257838.1| ERCC4 domain-containing protein [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137193|gb|EGG41482.1| ERCC4 domain-containing protein [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 197

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY------ 604
           K   S L  + GIG      +LQ FGT   +  ++   LA +EG+    A KI       
Sbjct: 123 KQQLSSLCSLPGIGEKFAVRMLQKFGTPLKVFTATTSELAKVEGLGDARAKKIKHVLESQ 182

Query: 605 -NHFHKNTSHT 614
             H  ++   T
Sbjct: 183 SKHLKESNQKT 193


>gi|225419696|ref|ZP_03761999.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme
           DSM 15981]
 gi|225041660|gb|EEG51906.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme
           DSM 15981]
          Length = 654

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I GIG    + L + FG   + + ++  E L +++GI   +A     +F    ++
Sbjct: 497 GIAGIGLANAKALCRHFGYEFENMRKADEEELVAVDGIGAVLAKAWMEYFSSEANN 552


>gi|157691416|ref|YP_001485878.1| NAD-dependent DNA ligase LigA [Bacillus pumilus SAFR-032]
 gi|190359234|sp|A8FAQ1|DNLJ_BACP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157680174|gb|ABV61318.1| DNA ligase (NAD(+)) [Bacillus pumilus SAFR-032]
          Length = 668

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           IG    + L   FG +  + +++ E L  ++ I +K+A  +  +F K  
Sbjct: 515 IGSKAAKTLALHFGDIDQLKQATKEQLLEVDEIGEKMADAVVTYFEKEE 563


>gi|229496499|ref|ZP_04390213.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
 gi|229316396|gb|EEN82315.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
          Length = 671

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    ++L ++F +++ +  +S E L +I+GI ++IA  I + F
Sbjct: 514 VGENVAKILTRTFNSIETLMEASQEELQTIDGIGERIAESIVSFF 558


>gi|91788454|ref|YP_549406.1| DNA ligase [Polaromonas sp. JS666]
 gi|123164833|sp|Q12AD4|DNLJ_POLSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91697679|gb|ABE44508.1| DNA ligase, NAD-dependent [Polaromonas sp. JS666]
          Length = 706

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L + FG +  I  ++ E L ++  +   +A  I 
Sbjct: 535 KSKQTTLPRFLFGLGIRHVGEATAKELARHFGNLDAIMDATQEQLLAVSDVGSIVAQSIR 594

Query: 605 NHF 607
             F
Sbjct: 595 TFF 597


>gi|227540068|ref|ZP_03970117.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240084|gb|EEI90099.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
          Length = 673

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    + L   F  +  ++++S E +AS++ I  +IA  ++ + +
Sbjct: 518 GIRHVGETIAKKLALYFKNIDALAQASVEEIASVQDIGGRIAESVHQYLN 567


>gi|82701780|ref|YP_411346.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
 gi|123754406|sp|Q2YBB7|DNLJ_NITMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|82409845|gb|ABB73954.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
          Length = 707

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R L + FG +  +  +  ETL  +  +   +A  I + F
Sbjct: 524 GIRNVGEATARDLARYFGGLDRLMDADVETLQQVSDVGPVVAQSIADFF 572


>gi|332704021|ref|ZP_08424109.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554170|gb|EGJ51214.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
          Length = 771

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    RLL   F  +  +  ++ + L  + GIS KI+  I + F    + +
Sbjct: 609 GIPHVGEETARLLASRFRDLDALGAATRQELEELPGISDKISESIVDFFLNEANRS 664


>gi|319951546|ref|ZP_08025350.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
 gi|319434794|gb|EFV90110.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
          Length = 726

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FGT++ I  +S + LA  +G+ + IA  +   F
Sbjct: 557 SIRHVGPTAARALATRFGTMEAIRAASDQELAETDGVGQTIAASVVEWF 605


>gi|225028066|ref|ZP_03717258.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353]
 gi|224954614|gb|EEG35823.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353]
          Length = 653

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    RLL + FG +++ +  +S E +  I+GI + IA  ++++F   
Sbjct: 496 GILNVGSSNARLLCRHFGNSLENLRGASVEEMTQIDGIGEVIATSVHDYFENE 548


>gi|307111014|gb|EFN59249.1| hypothetical protein CHLNCDRAFT_19196 [Chlorella variabilis]
          Length = 297

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  + G+     + L   FG+V +I ++S E L +  GI    A +++  FH+
Sbjct: 181 ALTVVRGVNKTDVKTLGDRFGSVAVIFKASAEELQACPGIGPTKARRLHETFHQ 234


>gi|300771799|ref|ZP_07081670.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761185|gb|EFK58010.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 673

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    + L   F  +  ++++S E +AS++ I  +IA  ++ + +
Sbjct: 518 GIRHVGETIAKKLALYFKNIDALAQASVEEIASVQDIGGRIAESVHQYLN 567


>gi|254172045|ref|ZP_04878721.1| DEAD/DEAH box helicase domain protein [Thermococcus sp. AM4]
 gi|214033941|gb|EEB74767.1| DEAD/DEAH box helicase domain protein [Thermococcus sp. AM4]
          Length = 720

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L ++  IG  R R L  + F  V+ I+ + P  L  +EGI  KI   IY + 
Sbjct: 646 ELVKLPNIGRKRARALYNAGFKNVEAIANAKPAELLEVEGIGAKILDGIYRYL 698


>gi|188586920|ref|YP_001918465.1| helicase, RecD/TraA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351607|gb|ACB85877.1| helicase, RecD/TraA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 726

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I GIGP     L++ FG   +++I   +PE L  + GI K+ A +I   F ++
Sbjct: 92  IKGIGPKTAESLVEHFGKEVLQVIEN-TPEKLQEVPGIGKEKAAQISRGFQEH 143


>gi|111023430|ref|YP_706402.1| NAD-dependent DNA ligase LigA [Rhodococcus jostii RHA1]
 gi|123045472|sp|Q0S2J2|DNLJ_RHOSR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110822960|gb|ABG98244.1| DNA ligase (NAD+) [Rhodococcus jostii RHA1]
          Length = 696

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I  SS E LA+++G+   IA  +   F
Sbjct: 534 SIRHVGPTAARALAGEFGSLARIRESSVEELAAVDGVGGTIAAAVAEWF 582


>gi|237745525|ref|ZP_04576005.1| DNA ligase [Oxalobacter formigenes HOxBLS]
 gi|229376876|gb|EEO26967.1| DNA ligase [Oxalobacter formigenes HOxBLS]
          Length = 685

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R ++   S       I  +G    R L + FG ++ +  ++ E L  ++ I   +A  I 
Sbjct: 513 RSRETTLSRFLYALGIRHVGETTARSLAEHFGNLQDLMNATEEQLLEVDDIGPVVALSIR 572

Query: 605 NHF 607
             F
Sbjct: 573 QFF 575


>gi|194016164|ref|ZP_03054779.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
 gi|194012519|gb|EDW22086.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
          Length = 668

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           IG    + L   FG +  + +++ + L  ++ I +K+A  +  +F K  
Sbjct: 515 IGSKAAKTLAMHFGDIDQLKQATKDQLLEVDEIGEKMADAVVTYFEKEE 563


>gi|256839697|ref|ZP_05545206.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13]
 gi|256738627|gb|EEU51952.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13]
          Length = 664

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  +   S L+E              I  +G    + L+ +F +++ + ++S E L +++
Sbjct: 485 KSAQNLMSSLEESKQVPFERVLFGLGIRFVGETVAKRLVSAFHSIEALEQASLEDLVAVD 544

Query: 594 GISKKIACKIYNHFHKNTSHT 614
            I ++IA  + ++F    + T
Sbjct: 545 EIGERIAQSVLSYFSDEKNRT 565


>gi|150007448|ref|YP_001302191.1| DNA ligase [Parabacteroides distasonis ATCC 8503]
 gi|298375424|ref|ZP_06985381.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19]
 gi|166216223|sp|A6LA55|DNLJ_PARD8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149935872|gb|ABR42569.1| DNA ligase [Parabacteroides distasonis ATCC 8503]
 gi|298267924|gb|EFI09580.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19]
          Length = 664

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  +   S L+E              I  +G    + L+ +F +++ + ++S E L +++
Sbjct: 485 KSAQNLMSSLEESKQVPFERVLFGLGIRFVGETVAKRLVSAFHSIEALEQASLEDLVAVD 544

Query: 594 GISKKIACKIYNHFHKNTSHT 614
            I ++IA  + ++F    + T
Sbjct: 545 EIGERIAQSVLSYFSDEKNRT 565


>gi|118575222|ref|YP_874965.1| helicase-associated endonuclease for fork-structured DNA
           [Cenarchaeum symbiosum A]
 gi|118193743|gb|ABK76661.1| helicase-associated endonuclease for fork-structured DNA
           [Cenarchaeum symbiosum A]
          Length = 231

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +K   S L  + G+G      +L+ FGT      +S   L+ + G+    A KI    
Sbjct: 157 QKQQLSSLSSLPGVGEKLAGRMLEKFGTPLRTFNASSAELSKVAGLGPSRAKKIRKML 214


>gi|168334213|ref|ZP_02692416.1| DNA ligase, NAD-dependent [Epulopiscium sp. 'N.t. morphotype B']
          Length = 639

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 15/78 (19%)

Query: 538 HRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGIS 596
           HRF              + L  I  +G    +L+ + F   +  I  +S E L  IEGI 
Sbjct: 480 HRFV-------------TAL-GIPQVGVENAKLICKYFXDNLDAIRAASEEELHDIEGIG 525

Query: 597 KKIACKIYNHFHKNTSHT 614
             IA +IY +F+   +  
Sbjct: 526 SLIAKEIYRYFNNEENKQ 543


>gi|149180346|ref|ZP_01858851.1| hypothetical protein BSG1_04985 [Bacillus sp. SG-1]
 gi|148852538|gb|EDL66683.1| hypothetical protein BSG1_04985 [Bacillus sp. SG-1]
          Length = 137

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 14  QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLE 73
              +I   +L+VGKA  L++R+K ++  N    +      ++  I        +E  + E
Sbjct: 61  LFYNINDDLLFVGKARKLRQRVKKHLEDNVSPLKPYR--EEVYRIDVMYVEDPMEREIYE 118

Query: 74  ANMIKRLKPRFNI 86
             +I  L+ ++N+
Sbjct: 119 TYLINTLQAKYNV 131


>gi|315224924|ref|ZP_07866743.1| DNA protecting protein DprA [Capnocytophaga ochracea F0287]
 gi|314945037|gb|EFS97067.1| DNA protecting protein DprA [Capnocytophaga ochracea F0287]
          Length = 364

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH--FHKNTSH 613
            L +I  IG +  + L+  FG+ + +       L  + GI  KI   I +    H+  + 
Sbjct: 10  ALKKIPLIGDITAKKLISHFGSAQNVFAQPKSALEKVAGIGSKITQNILSARCLHEAETE 69


>gi|308174953|ref|YP_003921658.1| excinuclease [Bacillus amyloliquefaciens DSM 7]
 gi|307607817|emb|CBI44188.1| putative excinuclease [Bacillus amyloliquefaciens DSM 7]
 gi|328554960|gb|AEB25452.1| excinuclease [Bacillus amyloliquefaciens TA208]
 gi|328913273|gb|AEB64869.1| putative excinuclease [Bacillus amyloliquefaciens LL3]
          Length = 124

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  L++RIK +   N    +      ++  I   V    +E  
Sbjct: 45  GIFMFYNIHDELLFVGKARKLRQRIKKHFEDNVSPVKHHR--DEVYKIEVCVVNDPMERD 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E   I  L+ ++NI
Sbjct: 103 IYETYAINTLQSKYNI 118


>gi|256819503|ref|YP_003140782.1| DNA protecting protein DprA [Capnocytophaga ochracea DSM 7271]
 gi|256581086|gb|ACU92221.1| DNA protecting protein DprA [Capnocytophaga ochracea DSM 7271]
          Length = 364

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH--FHKNTSH 613
            L +I  IG +  + L+  FG+ + +       L  + GI  KI   I +    H+  + 
Sbjct: 10  ALKKIPLIGDITAKKLISHFGSAQNVFAQPKSALEKVAGIGSKITQNILSARCLHEAETE 69


>gi|145640786|ref|ZP_01796369.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|145274712|gb|EDK14575.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
          Length = 150

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 20/46 (43%)

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 2   GEATALNLANHFKTLDALKDANLEELQQVPDVGEVVANRIFIFWRE 47


>gi|322373465|ref|ZP_08048001.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
 gi|321278507|gb|EFX55576.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
          Length = 652

 Score = 53.6 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + LL++F T+K ++ +  E +A+++G+ + IA  I  +F K  
Sbjct: 502 GIRHVGAKVSKQLLEAFETIKDLASADVEAIAAVDGLGEVIAKSIQRYFVKEE 554


>gi|39995996|ref|NP_951947.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
 gi|81702997|sp|Q74ER9|DNLJ_GEOSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39982761|gb|AAR34220.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
 gi|298505011|gb|ADI83734.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens KN400]
          Length = 670

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    +LL  +FG+++ + R++ E L SI  +  ++A  I   F    +
Sbjct: 518 GIRHVGEHTAKLLAGAFGSIENLERATEEELLSIREVGPQVARSIITFFRNEGN 571


>gi|321309600|ref|YP_004191929.1| DNA ligase [Mycoplasma haemofelis str. Langford 1]
 gi|319801444|emb|CBY92090.1| DNA ligase [Mycoplasma haemofelis str. Langford 1]
          Length = 662

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K R + ++  L    I  IG     L+   FG++  +  +S E L SI+GI +K A  I 
Sbjct: 495 KSRNRESHKILCGLGIEFIGEEVANLIFGHFGSIDEVLSASKEELMSIDGIGEKCAESII 554

Query: 605 NH 606
             
Sbjct: 555 QW 556


>gi|296140594|ref|YP_003647837.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
 gi|296028728|gb|ADG79498.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
          Length = 688

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L Q  G+++ I+ +  + LA ++G+ + IA  +   F
Sbjct: 529 SIRHVGPSAARALAQELGSLEAIAAADVDQLAEVDGVGRVIAEAVVEWF 577


>gi|91791658|ref|YP_561309.1| nuclease [Shewanella denitrificans OS217]
 gi|91713660|gb|ABE53586.1| nuclease [Shewanella denitrificans OS217]
          Length = 51

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             +GP     LL  F  V+ +  +S   L  ++GI K+ A KI    
Sbjct: 2   PDVGPKLASRLLHHFNNVEAVFIASEAALMQVDGIGKQKAKKIREIL 48


>gi|258592875|emb|CBE69184.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [NC10
           bacterium 'Dutch sediment']
          Length = 684

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G     +L + +G++  + ++  E LA I GI  +IA  +  +F +  +
Sbjct: 530 VGEHVATILARHYGSMDRLEQAPEEELAEIFGIGPRIAQSVALYFRQPEN 579


>gi|313898151|ref|ZP_07831690.1| DNA ligase (NAD+) [Clostridium sp. HGF2]
 gi|312957179|gb|EFR38808.1| DNA ligase (NAD+) [Clostridium sp. HGF2]
          Length = 665

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 552 AAYSPLDE-ING-----IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  +PL++ I G     +G    ++L + F ++  +  ++ E L +I+ I +  A  I  
Sbjct: 495 SKQNPLEDLIYGLGIRQVGKKAAKVLAKHFLSMDALMAANEEELVAIKDIGQITAESITA 554

Query: 606 HFHK 609
            FH+
Sbjct: 555 FFHE 558


>gi|260581847|ref|ZP_05849643.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
 gi|260095040|gb|EEW78932.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
          Length = 679

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 20/47 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  +  + L  +  + + +A +I+  + +
Sbjct: 530 VGEATALNLANHFKTLDALKAADLDQLQQVPDVGEVVANRIFIFWRE 576


>gi|301169841|emb|CBW29445.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae 10810]
          Length = 670

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLDTLKDANLEELQQVPDVGEVVANRIFIFWRE 567


>gi|242398904|ref|YP_002994328.1| Putative ski2-type helicase [Thermococcus sibiricus MM 739]
 gi|242265297|gb|ACS89979.1| Putative ski2-type helicase [Thermococcus sibiricus MM 739]
          Length = 744

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L  +  IG  R R L  + F  +  I R+    L  +EGI   +  KIY HF
Sbjct: 669 ELITLPMIGRKRARALYNAGFKGIDDIVRAKASELLKVEGIGIGVIEKIYQHF 721


>gi|145630192|ref|ZP_01785974.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
 gi|144984473|gb|EDJ91896.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
          Length = 670

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLDTLKDANLEELQQVPDVGEVVANRIFIFWRE 567


>gi|57641834|ref|YP_184312.1| DNA repair and recombination protein RadA [Thermococcus
           kodakarensis KOD1]
 gi|73913728|sp|Q5JET4|RADA_PYRKO RecName: Full=DNA repair and recombination protein radA; Contains:
           RecName: Full=Pko radA intein
 gi|57160158|dbj|BAD86088.1| RadA/Rad51 recombinase [Thermococcus kodakarensis KOD1]
          Length = 836

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           S L+++ G+GP     L ++ + T++ I+ +SP  L  I GIS+  A KI     +  +
Sbjct: 40  SALEDLPGVGPATAEKLREAGYDTIEAIAVASPLELKEIAGISEGAALKIIQAAREAAN 98


>gi|289579915|ref|YP_003478381.1| ribosomal protein L32e [Natrialba magadii ATCC 43099]
 gi|289529468|gb|ADD03819.1| Ribosomal protein L32e [Natrialba magadii ATCC 43099]
          Length = 240

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L++I+G+G  +   L ++ F +++ +  +  + LA  +G+   +A +I  
Sbjct: 10  ELEDISGVGASKADALREAGFESIEDVKEADQDELAEADGVGNALAARIKA 60


>gi|193213418|ref|YP_001999371.1| DNA protecting protein DprA [Chlorobaculum parvum NCIB 8327]
 gi|193086895|gb|ACF12171.1| DNA protecting protein DprA [Chlorobaculum parvum NCIB 8327]
          Length = 387

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           L ++ GIGP R R ++ +FG+   +  +  E L  I GI K +A +
Sbjct: 17  LSKLPGIGPARARTMIATFGSGSTLLEADAEALIQIPGIGKTLARQ 62


>gi|326797492|ref|YP_004315311.1| DNA ligase [Sphingobacterium sp. 21]
 gi|326548256|gb|ADZ76641.1| DNA ligase [Sphingobacterium sp. 21]
          Length = 672

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L  SF  +  + ++S E +A+++ I ++IA  +  +F
Sbjct: 522 VGETIAKKLANSFKNIDNLIQASVEEIAAVDEIGERIAQSVKEYF 566


>gi|257484569|ref|ZP_05638610.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 75

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 35/75 (46%)

Query: 340 IIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCM 399
             + A+ NA ++ T +L+         +   K   L   P R+E YD SH  G + V   
Sbjct: 1   WQQMAVTNAEQALTARLANRQHVASRFEALAKVLGLEDPPMRLECYDISHSSGEATVASC 60

Query: 400 VVVGENGFVKNQYRK 414
           VV G  G +K+ YR+
Sbjct: 61  VVFGPEGPIKSDYRR 75


>gi|219870289|ref|YP_002474664.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
 gi|254781340|sp|B8F314|DNLJ_HAEPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219690493|gb|ACL31716.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
          Length = 675

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 25/47 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   FGT+  I ++  +TL  ++ + + +A +++  + +
Sbjct: 523 VGESTAQNLANHFGTLDAIRQADLDTLKQVQDVGEVVANRLFQFWQE 569


>gi|167855687|ref|ZP_02478444.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
 gi|167853205|gb|EDS24462.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
          Length = 675

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 25/47 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   FGT+  I ++  +TL  ++ + + +A +++  + +
Sbjct: 523 VGESTAQNLANHFGTLDAIRQADLDTLKQVQDVGEVVANRLFQFWQE 569


>gi|167549563|ref|ZP_02343322.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205325268|gb|EDZ13107.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 671

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLETLQAATIDELQKVPDVGIVVATHVFNFFAEESN 569


>gi|240102927|ref|YP_002959236.1| ski2-like helicase [Thermococcus gammatolerans EJ3]
 gi|239910481|gb|ACS33372.1| ski2-type helicase, putative [Thermococcus gammatolerans EJ3]
          Length = 720

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 545 HRKRRKKAAYSPLDEI--NGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIAC 601
           H + R       L+ +    IG  R R L  + F +V+ I+ + P  L ++EGI  KI  
Sbjct: 633 HLRLRHGVREELLELVRLPNIGRKRARALYNAGFRSVEAIANAKPAELLAVEGIGAKILD 692

Query: 602 KIYNHF 607
            IY H 
Sbjct: 693 GIYRHL 698


>gi|75763327|ref|ZP_00743070.1| UvrC-like protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|74489188|gb|EAO52661.1| UvrC-like protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
          Length = 87

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
          G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +     E  
Sbjct: 8  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVEDPTERE 65

Query: 71 LLEANMIKRLKPRFNI 86
          + E  +I   K ++N+
Sbjct: 66 IYETYIINEYKAKYNV 81


>gi|154685157|ref|YP_001420318.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens FZB42]
 gi|166215394|sp|A7Z261|DNLJ_BACA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|154351008|gb|ABS73087.1| LigA [Bacillus amyloliquefaciens FZB42]
          Length = 669

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L+       I  IG    + L   F +++ + + + E L +++ I +K+A  +
Sbjct: 497 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTEEELLAVDEIGEKMADAV 556

Query: 604 YNHFHK 609
             +F K
Sbjct: 557 ITYFRK 562


>gi|52313150|emb|CAH55605.1| DNA ligase (NAD dependent) [Bacillus amyloliquefaciens FZB42]
          Length = 668

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L+       I  IG    + L   F +++ + + + E L +++ I +K+A  +
Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQVTEEELLAVDEIGEKMADAV 555

Query: 604 YNHFHK 609
             +F K
Sbjct: 556 ITYFRK 561


>gi|260893478|ref|YP_003239575.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4]
 gi|260865619|gb|ACX52725.1| Holliday junction DNA helicase RuvA [Ammonifex degensii KC4]
          Length = 193

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNHFHKNT 611
            L +I G+GP     LL  F +V+ +  +      E L  + G+ KK A ++     +  
Sbjct: 74  RLLKIGGVGPKTALALLSCF-SVEELREAIRSEDLEKLTVVPGVGKKTARRLLLELKEEK 132

Query: 612 SHT 614
              
Sbjct: 133 GAP 135


>gi|198274661|ref|ZP_03207193.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
 gi|198272108|gb|EDY96377.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
          Length = 666

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + ++F ++  +  ++ + L  ++ I +KIA  I  +FH   +
Sbjct: 515 VGETVAKKVARAFRSIDDLKSATLDDLIHVDEIGEKIAQSILRYFHSEKN 564


>gi|148272584|ref|YP_001222145.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166215575|sp|A5CQU5|DNLJ_CLAM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147830514|emb|CAN01449.1| NAD-dependant DNA ligase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 853

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R L   FG++  I  +S E LA+++G+   IA  + + F
Sbjct: 606 SIRHVGPVAARALAGWFGSLDAIRSASREELAAVDGVGGIIADALLDWF 654


>gi|126652417|ref|ZP_01724590.1| hypothetical protein BB14905_14165 [Bacillus sp. B14905]
 gi|126590838|gb|EAZ84952.1| hypothetical protein BB14905_14165 [Bacillus sp. B14905]
          Length = 123

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +    +L+VGKA  +++RIK +   N    +      ++  I        +E  
Sbjct: 45  GIFLFYNEKNELLFVGKARKIRQRIKKHFEDNVSPLKNYR--DEVFKIEVYEVEDPMERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E   I   + ++N+
Sbjct: 103 IYETYAINTFRSKYNV 118


>gi|262276434|ref|ZP_06054243.1| DNA ligase [Grimontia hollisae CIP 101886]
 gi|262220242|gb|EEY71558.1| DNA ligase [Grimontia hollisae CIP 101886]
          Length = 670

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            KA  + L        I  +G      L   F T + I  ++ E L  ++ +   +A  +
Sbjct: 501 SKAKETTLPRFIYSLGIREVGEATAANLANHFFTFEAIREATEEQLIEVQDVGVIVAKHV 560

Query: 604 YNHFHKNTSHT 614
            N F++  + T
Sbjct: 561 VNFFNEEHNKT 571


>gi|284037426|ref|YP_003387356.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74]
 gi|283816719|gb|ADB38557.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74]
          Length = 696

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 17/76 (22%)

Query: 549 RKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLAS 591
           R+K   + L  I               GI   G      L+  FG++  I  ++ E L +
Sbjct: 514 REKTVENILTAIERSKSQPFANVLFGLGIRYVGNTTAEKLVDYFGSMDAIMNATQEQLLA 573

Query: 592 IEGISKKIACKIYNHF 607
           +     +IA  +   F
Sbjct: 574 VPDTGPRIAESVVAWF 589


>gi|52079149|ref|YP_077940.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
 gi|52784516|ref|YP_090345.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
 gi|319647076|ref|ZP_08001302.1| DNA ligase [Bacillus sp. BT1B_CT2]
 gi|81386291|sp|Q65MR2|DNLJ_BACLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52002360|gb|AAU22302.1| DNA ligase [Bacillus licheniformis ATCC 14580]
 gi|52347018|gb|AAU39652.1| LigA [Bacillus licheniformis ATCC 14580]
 gi|317390900|gb|EFV71701.1| DNA ligase [Bacillus sp. BT1B_CT2]
          Length = 667

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L+       I  IG    + L   F T+  + +++ E L  ++ I  K+A  + 
Sbjct: 496 KSKKNSLERLLFGLGIRFIGAKAAKTLAMHFETLDKLKKATKEELIEVDEIGDKMADALV 555

Query: 605 NHFHK 609
            +F K
Sbjct: 556 TYFEK 560


>gi|311278661|ref|YP_003940892.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
 gi|308747856|gb|ADO47608.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
          Length = 671

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   +G+++ +  +S + L ++  +   +A  ++N F + ++
Sbjct: 520 VGEATAAGLAAHYGSLEALIAASIDDLQTVPDVGIVVATHVFNFFAEESN 569


>gi|183981708|ref|YP_001849999.1| NAD-dependent DNA ligase LigA [Mycobacterium marinum M]
 gi|254781377|sp|B2HIF0|DNLJ_MYCMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183175034|gb|ACC40144.1| DNA ligase [NAD dependent] LigA [Mycobacterium marinum M]
          Length = 687

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I  ++ E LA++EG+   IA  +   F
Sbjct: 525 SIRHVGPTAARALATEFGSIDAIVSATTEQLAAVEGVGPTIASAVSEWF 573


>gi|166216288|sp|Q0HWD2|DNLJ_SHESR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 688

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   FG+++ +  ++ E L  +E I + +A  + + F
Sbjct: 538 VGEATAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 582


>gi|118617527|ref|YP_905859.1| NAD-dependent DNA ligase LigA [Mycobacterium ulcerans Agy99]
 gi|166216215|sp|A0PPW9|DNLJ_MYCUA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118569637|gb|ABL04388.1| DNA ligase [NAD dependent] LigA [Mycobacterium ulcerans Agy99]
          Length = 683

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I  ++ E LA++EG+   IA  +   F
Sbjct: 521 SIRHVGPTAARALATEFGSIDAIVAATTEQLAAVEGVGPTIASAVSEWF 569


>gi|114047080|ref|YP_737630.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
 gi|113888522|gb|ABI42573.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
          Length = 690

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   FG+++ +  ++ E L  +E I + +A  + + F
Sbjct: 540 VGEATAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 584


>gi|169828520|ref|YP_001698678.1| hypothetical protein Bsph_3027 [Lysinibacillus sphaericus C3-41]
 gi|168993008|gb|ACA40548.1| Hypothetical yurQ protein [Lysinibacillus sphaericus C3-41]
          Length = 126

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +    +L+VGKA  +++RIK +   N    +      ++  I        +E  
Sbjct: 48  GIFLFYNEKNELLFVGKARKIRQRIKKHFEDNVSPMKNYR--DEVFKIEVYEVEDPMERE 105

Query: 71  LLEANMIKRLKPRFNI 86
           + E   I   + ++N+
Sbjct: 106 IYETYAINTFRSKYNV 121


>gi|167770441|ref|ZP_02442494.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
           17241]
 gi|167667036|gb|EDS11166.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
           17241]
          Length = 664

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I GIG    +LL Q FGT+  +  +S E +A I+G    +A    + F
Sbjct: 513 GIRGIGQRSAQLLAQRFGTMDGVLAASVEEIAQIDGFGGIMAQNTADFF 561


>gi|148927169|ref|ZP_01810794.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
 gi|147887384|gb|EDK72833.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
          Length = 675

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      +   FG++  I +++ + L  +EG+ + +A  I   F
Sbjct: 522 GIRHVGAQTAIDVTAHFGSLTAIRQATIDQLHEVEGVGEVVAESIVAWF 570


>gi|295704091|ref|YP_003597166.1| GIY-YIG catalytic domain-containing protein [Bacillus megaterium
           DSM 319]
 gi|294801750|gb|ADF38816.1| GIY-YIG catalytic domain protein [Bacillus megaterium DSM 319]
          Length = 266

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAY--NLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           Q+P  PG+Y   D  GR+LY+G A   +L +R+++++     ++       +I  + +  
Sbjct: 24  QLPSAPGIYFFFDKPGRLLYIG-ATTGSLLERVRAHVAGKGVSN-TKKFHKEICAVGYIE 81

Query: 63  TCT---EVEALLLEANMIKRLKPRFNIL 87
                 E++  +L   ++    P++N  
Sbjct: 82  VHGLKKELD--MLRTMLVNGYFPKYNKQ 107


>gi|124267002|ref|YP_001021006.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
 gi|166215820|sp|A2SGT2|DNLJ_METPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|124259777|gb|ABM94771.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
          Length = 677

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +  +S    I  IG    + L + FG +  +  +S E L  +  +   +A  +   F
Sbjct: 517 ARFLFS--LGIRHIGEATAKDLARHFGALDRVMDASVEQLLEVNDVGPVVAQSLRTFF 572


>gi|167631047|ref|YP_001681546.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
 gi|254781344|sp|B0TDL0|DNLJ_HELMI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167593787|gb|ABZ85535.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
          Length = 675

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 23/45 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + FG++  + +++ E L ++  I  K+A  +   F
Sbjct: 524 VGQTAAKTLARHFGSMDQLMKATTEELQAVSEIGPKMAESLQRWF 568


>gi|145633173|ref|ZP_01788905.1| DNA ligase [Haemophilus influenzae 3655]
 gi|144986399|gb|EDJ92978.1| DNA ligase [Haemophilus influenzae 3655]
          Length = 670

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  ++ E L  +  + + +A +I+  + +
Sbjct: 521 VGEATALNLANHFKTLDALKDANLEELQQVSDVGEVVANRIFIFWRE 567


>gi|293603951|ref|ZP_06686365.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
 gi|292817644|gb|EFF76711.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
          Length = 700

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R + + FG++  I  +  E L+S+  +   +A  I   F +
Sbjct: 548 GIRHVGETTARDVARHFGSIDAIMDADEEALSSVPDVGPVVAASIRRFFAE 598


>gi|227830380|ref|YP_002832160.1| ERCC4 domain protein [Sulfolobus islandicus L.S.2.15]
 gi|229579198|ref|YP_002837596.1| ERCC4 domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229582050|ref|YP_002840449.1| ERCC4 domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284997886|ref|YP_003419653.1| ERCC4 domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227456828|gb|ACP35515.1| ERCC4 domain protein [Sulfolobus islandicus L.S.2.15]
 gi|228009912|gb|ACP45674.1| ERCC4 domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012766|gb|ACP48527.1| ERCC4 domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284445781|gb|ADB87283.1| ERCC4 domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 233

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +    +G +    LL  FGT++ I  +S   L    G S+K A  IY     + S T
Sbjct: 162 ESFPNVGSVLAERLLLKFGTIQNICNASISELEKALG-SRKKAEDIYKILRAHYSKT 217


>gi|227827683|ref|YP_002829463.1| ERCC4 domain protein [Sulfolobus islandicus M.14.25]
 gi|227459479|gb|ACP38165.1| ERCC4 domain protein [Sulfolobus islandicus M.14.25]
          Length = 233

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +    +G +    LL  FGT++ I  +S   L    G S+K A  IY     + S T
Sbjct: 162 ESFPNVGSVLAERLLLKFGTIQNICNASISELEKALG-SRKKAEDIYKILRAHYSKT 217


>gi|223986795|ref|ZP_03636777.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
           12042]
 gi|223961228|gb|EEF65758.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
           12042]
          Length = 663

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
            +  + L++      I  IG    ++L   F T++ + +++ E L  I+ I    A  + 
Sbjct: 494 NSKQNSLEKLLYGLGIRQIGEKAAKILAYRFETMQALMQATYEELEEIKDIGAITAQTVL 553

Query: 605 NHFHKNTSH 613
           + FH   + 
Sbjct: 554 DFFHDEANQ 562


>gi|196250518|ref|ZP_03149209.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
 gi|196210008|gb|EDY04776.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
          Length = 670

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    +LL + F T++ +  ++ + L ++  I +K+A  I  +F
Sbjct: 514 VGAKAAQLLAEHFETMERLEAATKDELMAVPEIGEKMADSITTYF 558


>gi|138893932|ref|YP_001124385.1| NAD-dependent DNA ligase LigA [Geobacillus thermodenitrificans
           NG80-2]
 gi|166215760|sp|A4IJY6|DNLJ_GEOTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134265445|gb|ABO65640.1| DNA ligase [Geobacillus thermodenitrificans NG80-2]
          Length = 670

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    +LL + F T++ +  ++ + L ++  I +K+A  I  +F
Sbjct: 514 VGAKAAQLLAEHFETMERLEAATKDELMAVPEIGEKMADSITTYF 558


>gi|269836418|ref|YP_003318646.1| DNA protecting protein DprA [Sphaerobacter thermophilus DSM 20745]
 gi|269785681|gb|ACZ37824.1| DNA protecting protein DprA [Sphaerobacter thermophilus DSM 20745]
          Length = 359

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + GIG  R   LL+ FG++     ++ E L +  G+S+++A K+
Sbjct: 13  VPGIGATRVARLLEHFGSLAAAWEANVEELRAA-GLSERVAGKL 55


>gi|229584887|ref|YP_002843389.1| ERCC4 domain protein [Sulfolobus islandicus M.16.27]
 gi|238619854|ref|YP_002914680.1| ERCC4 domain protein [Sulfolobus islandicus M.16.4]
 gi|228019937|gb|ACP55344.1| ERCC4 domain protein [Sulfolobus islandicus M.16.27]
 gi|238380924|gb|ACR42012.1| ERCC4 domain protein [Sulfolobus islandicus M.16.4]
 gi|323474741|gb|ADX85347.1| nucleotide excision repair nuclease, Xpf [Sulfolobus islandicus
           REY15A]
 gi|323477469|gb|ADX82707.1| nucleotide excision repair nuclease, Xpf [Sulfolobus islandicus
           HVE10/4]
          Length = 233

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +    +G +    LL  FGT++ I  +S   L    G S+K A  IY     + S T
Sbjct: 162 ESFPNVGSVLAERLLLKFGTIQNICNASISELEKALG-SRKKAEDIYKILRAHYSKT 217


>gi|194466912|ref|ZP_03072899.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
 gi|194453948|gb|EDX42845.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
          Length = 680

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R++++ FG +  + ++  + +++I GI   I   I  +F
Sbjct: 523 GIRHVGAKAARIIMEHFGDLDSLMKADADEISAISGIGPTIGESIVTYF 571


>gi|302389647|ref|YP_003825468.1| DNA protecting protein DprA [Thermosediminibacter oceani DSM 16646]
 gi|302200275|gb|ADL07845.1| DNA protecting protein DprA [Thermosediminibacter oceani DSM 16646]
          Length = 359

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L+ I  +G +R R LL  F T      ++   L  + GIS+KI   I  +
Sbjct: 9   ALNMIPNLGAVRIRELLNYFQTYSDFMNATRTRLLEVPGISEKICDVILEY 59


>gi|324112923|gb|EGC06899.1| DNA ligase [Escherichia fergusonii B253]
          Length = 671

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FGT++ +  +S E L  +  +   +A   +N F + ++
Sbjct: 520 VGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHAHNFFAEESN 569


>gi|297202535|ref|ZP_06919932.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
 gi|197709937|gb|EDY53971.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
          Length = 730

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP+    L ++F ++  I ++S E LA+ +G+   IA  +   F ++
Sbjct: 562 SIRHVGPVAAEALARNFRSIDRIEQASEEELANTDGVGSIIAKSLKEWFAED 613


>gi|24374425|ref|NP_718468.1| DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
 gi|81460839|sp|Q8ED70|DNLJ_SHEON RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24348997|gb|AAN55912.1|AE015728_1 DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
          Length = 689

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   FG++  +  ++ E L  +E I + +A  + + F
Sbjct: 538 VGEATAANLAAHFGSLDALRIATIEQLIEVEDIGEVVAQHVAHFF 582


>gi|239928777|ref|ZP_04685730.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
 gi|291437098|ref|ZP_06576488.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
 gi|291339993|gb|EFE66949.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
          Length = 731

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP+    L ++F ++  I  +S E L + EG+ + +A  +   F + 
Sbjct: 563 SIRHVGPVAAEALARAFRSIDRIEEASEEELKNTEGVGEIVAAAVKQWFAEE 614


>gi|323344237|ref|ZP_08084463.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269]
 gi|323094966|gb|EFZ37541.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269]
          Length = 665

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    RL+ + F  +  +  +S + L  +EG+ + IA  +  +F
Sbjct: 515 VGETSARLIARHFKNIDALMEASLQDLTEVEGVGEVIAKSVIAYF 559


>gi|327440267|dbj|BAK16632.1| nuclease subunit of the excinuclease complex [Solibacillus
           silvestris StLB046]
          Length = 126

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +    +L+VGKA  +++RIK +   N    +     ++I+ I        +E  
Sbjct: 45  GIFFFYNEKNELLFVGKARKIRQRIKKHFEDNVSPMKNHR--AEIHKIEVYEIEDPMERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E   I + + ++NI
Sbjct: 103 IYETFAINQFQSKYNI 118


>gi|239825842|ref|YP_002948466.1| NAD-dependent DNA ligase LigA [Geobacillus sp. WCH70]
 gi|239806135|gb|ACS23200.1| DNA ligase, NAD-dependent [Geobacillus sp. WCH70]
          Length = 670

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    ++L + FGT+  +  ++ E L +I  I +K+A  I  +F K
Sbjct: 511 GIRHVGAKAAKVLAEHFGTMDRLQTATKEELMAIHEIGEKMADSIVTYFAK 561


>gi|212638096|ref|YP_002314616.1| NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus WK1]
 gi|254781544|sp|B7GFV1|DNLJ_ANOFW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212559576|gb|ACJ32631.1| NAD-dependent DNA ligase [Anoxybacillus flavithermus WK1]
          Length = 672

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L + F T++ + +++ E L +I  I +K+A  I  +F K  
Sbjct: 513 GIRHVGAKAAKTLAEHFETMERLQQATKEELMAIHEIGEKMADSIVTYFSKEE 565


>gi|148544657|ref|YP_001272027.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
 gi|184154010|ref|YP_001842351.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
 gi|227363780|ref|ZP_03847887.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
 gi|325682991|ref|ZP_08162507.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
 gi|209572830|sp|A5VLG6|DNLJ_LACRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781354|sp|B2G8T9|DNLJ_LACRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148531691|gb|ABQ83690.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
 gi|183225354|dbj|BAG25871.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
 gi|227071137|gb|EEI09453.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
 gi|324977341|gb|EGC14292.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
          Length = 680

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R++++ FG +  + ++  + +++I GI   I   I  +F
Sbjct: 523 GIRHVGAKAARIIMEHFGDLDSLMKADADEISAISGIGPTIGESIVTYF 571


>gi|326799926|ref|YP_004317745.1| DNA protecting protein DprA [Sphingobacterium sp. 21]
 gi|326550690|gb|ADZ79075.1| DNA protecting protein DprA [Sphingobacterium sp. 21]
          Length = 364

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            L +I G+G    + L+   G+ + + RSS + L  I GI +++A  I    HK 
Sbjct: 8   ALTQIKGVGNTLAKQLIDHCGSAEEVFRSSKKQLMLIPGIGERVAGNI---LHKE 59


>gi|320450381|ref|YP_004202477.1| DNA-dependent DNA polymerase subunit beta [Thermus scotoductus
           SA-01]
 gi|320150550|gb|ADW21928.1| DNA-dependent DNA polymerase beta chain [Thermus scotoductus SA-01]
          Length = 575

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 542 ITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFG--TVKMISRS-SPETLASIEGIS 596
           I  HR+  ++     L   E+ G+GP   R L    G  +++ +  +     L  ++G  
Sbjct: 78  IKKHRELAERVPKGVLAVMEVPGVGPKTARQLYDELGIDSLEKLREALDRGDLLRLKGFG 137

Query: 597 KKIACKIYNHF 607
           +K A +I    
Sbjct: 138 QKKAERIREGL 148


>gi|154488672|ref|ZP_02029521.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis
           L2-32]
 gi|154082809|gb|EDN81854.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis
           L2-32]
          Length = 890

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   R +  +FGT+  I  +S + L+ I+GI  +IA  +   F
Sbjct: 733 LGPPTARTIASAFGTLDAIEHASVDELSQIDGIGPEIAESVVTWF 777


>gi|119898292|ref|YP_933505.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
 gi|166215393|sp|A1K713|DNLJ_AZOSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119670705|emb|CAL94618.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
          Length = 693

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L + FG++  +  +    L  +  +   +A  I   F +
Sbjct: 526 GIRNVGEATAKDLARHFGSLDALLAADEGALQQVPDVGPVVAKCIAEFFAE 576


>gi|228991555|ref|ZP_04151500.1| hypothetical protein bpmyx0001_23050 [Bacillus pseudomycoides DSM
           12442]
 gi|228768209|gb|EEM16827.1| hypothetical protein bpmyx0001_23050 [Bacillus pseudomycoides DSM
           12442]
          Length = 124

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N     I     ++  I   +    +E  
Sbjct: 45  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSP--IQAHRDEVYRIDVCIVEDPMERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I  L+ ++N+
Sbjct: 103 IYETYIINELQAKYNV 118


>gi|254422740|ref|ZP_05036458.1| DNA protecting protein DprA, putative [Synechococcus sp. PCC 7335]
 gi|196190229|gb|EDX85193.1| DNA protecting protein DprA, putative [Synechococcus sp. PCC 7335]
          Length = 411

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 26/45 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           ++  +GP+  + L + FGT+++  +++   L  ++GI    A +I
Sbjct: 13  QVKHVGPVTIKRLWEHFGTLELAWQATASELLKVDGIGLLSAERI 57


>gi|312796238|ref|YP_004029160.1| NAD-dependent DNA ligase [Burkholderia rhizoxinica HKI 454]
 gi|312168013|emb|CBW75016.1| NAD-dependent DNA ligase (EC 6.5.1.2) [Burkholderia rhizoxinica HKI
           454]
          Length = 681

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R L + FG++  +  +S E L  +  +   +A  I + F +
Sbjct: 524 GIRHVGEATARDLARHFGSLNALIDASEEALLEVNDVGPVVAEAIRHFFSE 574


>gi|251793989|ref|YP_003008721.1| NAD-dependent DNA ligase LigA [Aggregatibacter aphrophilus NJ8700]
 gi|247535388|gb|ACS98634.1| DNA ligase, NAD-dependent [Aggregatibacter aphrophilus NJ8700]
          Length = 671

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G      L   F T++ +  +  E L  +  + + +A +I+
Sbjct: 504 KAKHTTLARFIFALGIRDVGEAIALNLANHFKTLEALQNADLEQLQQVPDVGEVVANRIF 563

Query: 605 NHFHKN 610
             + + 
Sbjct: 564 VFWREE 569


>gi|315445158|ref|YP_004078037.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
 gi|315263461|gb|ADU00203.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
          Length = 701

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+++ I  +S E LA  EG+   IA  + + F
Sbjct: 537 SIRHVGPTAARALATEFGSLEAIETASEEQLAGTEGVGPTIAAAVIDWF 585


>gi|45358958|ref|NP_988515.1| Hef nuclease [Methanococcus maripaludis S2]
 gi|45047824|emb|CAF30951.1| Helix-hairpin-helix motif:DEAD/DEAH box helicase:Helicase,
           C-terminal:Helix-hairpin-helix DNA-binding, class
           1:ERCC4 domain [Methanococcus maripaludis S2]
          Length = 752

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K R+K      + +  +GP+    LL +F +V+ I  +S + L S++G+    A KI  
Sbjct: 689 KERQKFLV---EGLPDVGPVMAENLLDNFNSVENIFTASEKELTSVDGVGPITAKKIRE 744


>gi|145224827|ref|YP_001135505.1| NAD-dependent DNA ligase LigA [Mycobacterium gilvum PYR-GCK]
 gi|190359265|sp|A4TDZ8|DNLJ_MYCGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145217313|gb|ABP46717.1| DNA ligase, NAD-dependent [Mycobacterium gilvum PYR-GCK]
          Length = 712

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+++ I  +S E LA  EG+   IA  + + F
Sbjct: 548 SIRHVGPTAARALATEFGSLEAIETASEEQLAGTEGVGPTIAAAVIDWF 596


>gi|293401241|ref|ZP_06645385.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305367|gb|EFE46612.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 662

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 552 AAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  +PL++      I  +G    ++L + F T++ +  +S E L +I+ I    A  I  
Sbjct: 496 SKQNPLEDLVYGLGIRQVGKKAAKVLAKHFLTMEKLMAASEEELVAIKDIGDITAQSIVA 555

Query: 606 HFHK 609
            F +
Sbjct: 556 FFRE 559


>gi|332529208|ref|ZP_08405172.1| DNA ligase [Hylemonella gracilis ATCC 19624]
 gi|332041431|gb|EGI77793.1| DNA ligase [Hylemonella gracilis ATCC 19624]
          Length = 738

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L        I  +G    + L + FG +  I  +  E L     +   +A  I
Sbjct: 567 QKSKQTTLPRFLYGLGIRHVGESTAKDLARHFGQLDAIMDAGVEALMEAPDVGPVVAQSI 626

Query: 604 YNHF 607
              F
Sbjct: 627 RTFF 630


>gi|311069778|ref|YP_003974701.1| putative excinuclease [Bacillus atrophaeus 1942]
 gi|310870295|gb|ADP33770.1| putative excinuclease [Bacillus atrophaeus 1942]
          Length = 124

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  L++RIK +   N    +      ++  I   +    ++  
Sbjct: 45  GIFMFYNINDELLFVGKARKLRQRIKKHFEDNVSPIKQHR--DEVYKIEVCLVEDPMDRE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  MI  L+ ++NI
Sbjct: 103 IYETYMINTLQSKYNI 118


>gi|326792661|ref|YP_004310482.1| helicase, RecD/TraA family [Clostridium lentocellum DSM 5427]
 gi|326543425|gb|ADZ85284.1| helicase, RecD/TraA family [Clostridium lentocellum DSM 5427]
          Length = 749

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 9/54 (16%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPET---LASIEGISKKIACKIYNHFH 608
           I GIG    + +++ FG  T ++I     E    LA + GIS+K A +I   FH
Sbjct: 87  IKGIGAKTAKKIVKHFGLDTFRIIE----EEPLVLAQVSGISEKKAQEIGEIFH 136


>gi|327539302|gb|EGF25923.1| DNA recombination-mediator protein A [Rhodopirellula baltica WH47]
          Length = 424

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            G+GP     L+++FG+ + I  +   +LAS+ G+  K+A  I
Sbjct: 68  PGLGPRTLTSLMEAFGSARAILNADKNSLASVHGVGPKLAHVI 110


>gi|308272453|emb|CBX29057.1| Transcription elongation protein nusA [uncultured Desulfobacterium
           sp.]
          Length = 432

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 469 LDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILY 528
           +D     + +A+ V   L     I +I      + +  ME     +  ++ +  R   + 
Sbjct: 272 IDIIPWHVDSAKYVCNALAPAEIIRVI----IDEDNHAMEVIVPDESLSIAIGKRGQNVR 327

Query: 529 FIQRL-------RDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKM 580
              +L       + E+H      +     K  Y  L  + G+G      L++  F +V  
Sbjct: 328 LASKLTGWNLDVQSESH-----YNEVL--KNGYDSLVSLPGVGINLVNSLIEKGFTSVDE 380

Query: 581 ISRSSPETLASIEGISKKIACKIYN 605
           IS +S   L  I+GI+K+ A K+ N
Sbjct: 381 ISNASASDLMQIKGIAKEKAEKLIN 405


>gi|32476472|ref|NP_869466.1| DNA processing chain A [Rhodopirellula baltica SH 1]
 gi|32447017|emb|CAD78923.1| DNA processing chain A [Rhodopirellula baltica SH 1]
          Length = 455

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            G+GP     L+++FG+ + I  +   +LAS+ G+  K+A  I
Sbjct: 99  PGLGPRTLTSLMEAFGSARAILNADKNSLASVHGVGPKLAHVI 141


>gi|262394922|ref|YP_003286776.1| DNA ligase [Vibrio sp. Ex25]
 gi|262338516|gb|ACY52311.1| DNA ligase [Vibrio sp. Ex25]
          Length = 690

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   F T++ I  ++ E L  ++ I   +A  I   F +  +  
Sbjct: 541 VGEATAANLAMHFKTLEAIQNANEEQLIEVQDIGAVVAQHITTFFSEEQNQA 592


>gi|254229732|ref|ZP_04923141.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25]
 gi|151937777|gb|EDN56626.1| DNA ligase, NAD-dependent [Vibrio sp. Ex25]
          Length = 407

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   F T++ I  ++ E L  ++ I   +A  I   F +  +  
Sbjct: 258 VGEATAANLAMHFKTLEAIQNANEEQLIEVQDIGAVVAQHITTFFSEEQNQA 309


>gi|322368190|ref|ZP_08042759.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253]
 gi|320552206|gb|EFW93851.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253]
          Length = 685

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R L ++F ++  +  +  + L ++  I  K+A  I   F
Sbjct: 530 GIPRVGTETARELARTFESMDDVMNADSDELEAVPDIGPKVAAGIREFF 578


>gi|255324552|ref|ZP_05365669.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum
           SK141]
 gi|255298458|gb|EET77758.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum
           SK141]
          Length = 689

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 25/86 (29%)

Query: 547 KRRKK-----------AAYSPLDEING--------------IGPLRKRLLLQSFGTVKMI 581
           KR KK              + L+E+ G              +GP+  R L   +G++  +
Sbjct: 497 KRSKKEGNVKVNTAGQNLLNNLEEVKGRDFWRVLVSLSIRHVGPIAARALASRYGSMDKL 556

Query: 582 SRSSPETLASIEGISKKIACKIYNHF 607
             +  E LA ++G+   IA   ++ F
Sbjct: 557 RAAKTEELAEVDGVGMTIAQSFHDWF 582


>gi|161527945|ref|YP_001581771.1| ERCC4 domain-containing protein [Nitrosopumilus maritimus SCM1]
 gi|160339246|gb|ABX12333.1| ERCC4 domain protein [Nitrosopumilus maritimus SCM1]
          Length = 228

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +   S L  + GIG      +L+ FGT   +  ++   L+ +EG+    A KI    
Sbjct: 154 RQQLSSLCSLPGIGEKFAIRMLEKFGTPLKVFTATTAELSKVEGLGDARAKKIKKVL 210


>gi|88800009|ref|ZP_01115580.1| DNA ligase, NAD-dependent [Reinekea sp. MED297]
 gi|88777287|gb|EAR08491.1| DNA ligase, NAD-dependent [Reinekea sp. MED297]
          Length = 674

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    R L   FGT++ +  ++   L  +E +  K+A  + N+F +  +
Sbjct: 520 VGETTARNLAMHFGTIEKLMSATEAQLLDVEDVGPKVAAHVVNYFSEEQN 569


>gi|240102188|ref|YP_002958496.1| DNA repair and recombination protein RadA [Thermococcus
           gammatolerans EJ3]
 gi|239909741|gb|ACS32632.1| DNA repair and recombination protein RadA (radA) [Thermococcus
           gammatolerans EJ3]
          Length = 355

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L+++ G+GP     L ++ + +++ I+ +SP  L  I GIS+  A KI     +  +
Sbjct: 43  LEDLPGVGPATAEKLREAGYDSIEAIAVASPLELKEIAGISEGAALKIIQAAREAAN 99


>gi|166216286|sp|A0KVI4|DNLJ_SHESA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 689

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   FG+++ +  ++ E L  +E I + +A  + + F
Sbjct: 538 VGETTAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 582


>gi|117920017|ref|YP_869209.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
 gi|117612349|gb|ABK47803.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
          Length = 691

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   FG+++ +  ++ E L  +E I + +A  + + F
Sbjct: 540 VGETTAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 584


>gi|14521089|ref|NP_126564.1| ski2-like helicase [Pyrococcus abyssi GE5]
 gi|18203529|sp|Q9V0A9|HELS_PYRAB RecName: Full=Putative ski2-type helicase
 gi|5458306|emb|CAB49795.1| DNA helicase [Pyrococcus abyssi GE5]
          Length = 715

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           PL E+  +G  R R L  + F  ++ I  + P  L  IEGI  KI   I+ +  K 
Sbjct: 642 PLMELPMVGRKRARALYNAGFKDLESIRNAKPSELLRIEGIGAKIVEGIFKYLGKE 697


>gi|309777086|ref|ZP_07672052.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915156|gb|EFP60930.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
          Length = 665

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 552 AAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  +PL++      I  +G    ++L + F T+  +  +S E L +I+ I +  A  I  
Sbjct: 495 SKKNPLEDLVYGLGIRQVGKKAAKVLAKQFLTMDALMAASVEELVAIKDIGQITAESITA 554

Query: 606 HFHK 609
            FH+
Sbjct: 555 FFHE 558


>gi|14591093|ref|NP_143168.1| ski2-like helicase [Pyrococcus horikoshii OT3]
 gi|18202084|sp|O59025|HELS_PYRHO RecName: Full=Putative ski2-type helicase
 gi|3257700|dbj|BAA30383.1| 715aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 715

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           PL E+  IG  R R L  + F  ++ I  + P  L  +EGI  KI   I  H 
Sbjct: 642 PLMELPMIGRKRARALYNAGFRDLESIKNARPAELLEVEGIGAKIVEAILKHL 694


>gi|254283004|ref|ZP_04957972.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
 gi|219679207|gb|EED35556.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
          Length = 675

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    R L   FG++  I  +  E L  ++ +   +A  I N F +  +
Sbjct: 522 VGESTARALAMHFGSLDAIEGAGQEVLEEVDDVGPVVATHIRNFFSEAAN 571


>gi|254508455|ref|ZP_05120575.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
 gi|219548665|gb|EED25670.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
          Length = 669

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            KA  + L        I  +G      L   F T+  I  +S E L ++  I   +A  I
Sbjct: 502 AKAKQTTLARFLYSLGIREVGEATAANLALHFKTLDAIKAASHEQLIAVPDIGDIVASHI 561

Query: 604 YNHFHKNTSHT 614
              F ++ + +
Sbjct: 562 TAFFAQDNNQS 572


>gi|325295048|ref|YP_004281562.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065496|gb|ADY73503.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 723

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + L Q F  +  +  +S   LASI+GI    A  I N F    +
Sbjct: 549 GIRHVGEKTAQFLAQKFKDINELMNASFSELASIQGIGAITATSIRNFFKAKQN 602


>gi|189345858|ref|YP_001942387.1| DNA protecting protein DprA [Chlorobium limicola DSM 245]
 gi|189340005|gb|ACD89408.1| DNA protecting protein DprA [Chlorobium limicola DSM 245]
          Length = 392

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  + G+GP R   ++  FG    + R+S +    + GI + +A +I    
Sbjct: 17  LASVPGLGPARINAIITRFGYQPDLLRASADVFLEVPGIGRSLAEEISGFL 67


>gi|304384418|ref|ZP_07366824.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973]
 gi|304334516|gb|EFM00803.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973]
          Length = 680

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    RLL + F  +  +  +SP+ L  IEG+   IA  +  +F  
Sbjct: 530 VGETSARLLARRFKNIDALMEASPDELMQIEGVGMSIANSVVGYFRN 576


>gi|238917130|ref|YP_002930647.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
 gi|238872490|gb|ACR72200.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
          Length = 669

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + ++  +  +  ++ +  E L +I  I    A  I++ FH   +
Sbjct: 518 GIRNVGKNTAKQIMNYYDNLMELADAGEEELQNIPDIGATTAKCIHDFFHDEAN 571


>gi|15618073|ref|NP_224357.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae CWL029]
 gi|15835684|ref|NP_300208.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae J138]
 gi|16752895|ref|NP_445166.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae AR39]
 gi|33241485|ref|NP_876426.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae TW-183]
 gi|7674003|sp|Q9Z934|DNLJ_CHLPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4376415|gb|AAD18302.1| DNA Ligase [Chlamydophila pneumoniae CWL029]
 gi|7189537|gb|AAF38439.1| DNA ligase [Chlamydophila pneumoniae AR39]
 gi|8978522|dbj|BAA98359.1| DNA ligase [Chlamydophila pneumoniae J138]
 gi|33235993|gb|AAP98083.1| DNA ligase (NAD+) [Chlamydophila pneumoniae TW-183]
          Length = 662

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 21/78 (26%)

Query: 549 RKKAAYSPLDEIN-------------------GIGPLRKRLLLQSFGTVKMISRSSPETL 589
           R+++A + L+ I                    GIG      L   F T+  +  ++ E L
Sbjct: 484 RERSARNILESIEQAKHVDLDRFLVALGIPLIGIGVATV--LAGHFETLDRVISATFEEL 541

Query: 590 ASIEGISKKIACKIYNHF 607
            S+EGI +K+A  I  +F
Sbjct: 542 LSLEGIGEKVAHAIAEYF 559


>gi|327439035|dbj|BAK15400.1| uncharacterized conserved protein [Solibacillus silvestris StLB046]
          Length = 390

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603
           PLD I GIG      +L +FGT   I   +S E L S+  I +K+A  I
Sbjct: 320 PLDFIPGIGAKTIEKMLDAFGTEMNILHEASFEELKSV--IPEKLAVLI 366


>gi|307261779|ref|ZP_07543445.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306868597|gb|EFN00408.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 676

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   F  +  I  ++ E L  ++ + + +A +I   + +
Sbjct: 526 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 572


>gi|307257368|ref|ZP_07539138.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306864218|gb|EFM96131.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 682

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   F  +  I  ++ E L  ++ + + +A +I   + +
Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578


>gi|307250556|ref|ZP_07532498.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857372|gb|EFM89486.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 682

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   F  +  I  ++ E L  ++ + + +A +I   + +
Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578


>gi|307248328|ref|ZP_07530352.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306855149|gb|EFM87328.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 682

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   F  +  I  ++ E L  ++ + + +A +I   + +
Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578


>gi|307246220|ref|ZP_07528301.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307255203|ref|ZP_07537019.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259638|ref|ZP_07541362.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306852829|gb|EFM85053.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306861831|gb|EFM93809.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866283|gb|EFM98147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 682

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   F  +  I  ++ E L  ++ + + +A +I   + +
Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578


>gi|303250616|ref|ZP_07336813.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252937|ref|ZP_07534825.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|302650604|gb|EFL80763.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859575|gb|EFM91600.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 682

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   F  +  I  ++ E L  ++ + + +A +I   + +
Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578


>gi|303252068|ref|ZP_07338237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649050|gb|EFL79237.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 253

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   F  +  I  ++ E L  ++ + + +A +I   + +
Sbjct: 103 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 149


>gi|254173225|ref|ZP_04879898.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4]
 gi|214032634|gb|EEB73463.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4]
          Length = 352

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L+++ G+GP     L ++ + +++ I+ +SP  L  I GIS+  A KI     +  +
Sbjct: 40  LEDLPGVGPATAEKLREAGYDSIEAIAVASPLELKEIAGISEGAALKIIQAAREAAN 96


>gi|190150622|ref|YP_001969147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307263969|ref|ZP_07545570.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|254781246|sp|B3H275|DNLJ_ACTP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189915753|gb|ACE62005.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306870658|gb|EFN02401.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 682

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   F  +  I  ++ E L  ++ + + +A +I   + +
Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578


>gi|165976722|ref|YP_001652315.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190359223|sp|B0BQN6|DNLJ_ACTPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|165876823|gb|ABY69871.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 682

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   F  +  I  ++ E L  ++ + + +A +I   + +
Sbjct: 532 VGEATAQNLANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQE 578


>gi|18312257|ref|NP_558924.1| ATP-dependent, DNA binding helicase [Pyrobaculum aerophilum str.
           IM2]
 gi|18159700|gb|AAL63106.1| ATP-dependent, DNA binding helicase [Pyrobaculum aerophilum str.
           IM2]
          Length = 704

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 562 GIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           G+G +R R+L    F T++ I+R+S   +AS+ G  +K+A  I  
Sbjct: 652 GVGRVRARILYNFGFRTLRDIARASVREIASLPGFGEKLAESIIE 696


>gi|166216287|sp|Q0HK31|DNLJ_SHESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 688

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   FG+++ +  ++ E L  +E I + +A  + + F
Sbjct: 538 VGEATASNLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 582


>gi|52425821|ref|YP_088958.1| NAD-dependent DNA ligase LigA [Mannheimia succiniciproducens
           MBEL55E]
 gi|81386743|sp|Q65RN7|DNLJ_MANSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52307873|gb|AAU38373.1| Lig protein [Mannheimia succiniciproducens MBEL55E]
          Length = 675

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 19/87 (21%)

Query: 542 ITTHRKRR--KKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMIS 582
           IT  R  R  +K+A + LD +               GI   G      L   F  +  + 
Sbjct: 483 ITLMRLERMGEKSAQNALDSLEKAKNTTLARFIFALGIREVGEATALNLANHFKNLDALQ 542

Query: 583 RSSPETLASIEGISKKIACKIYNHFHK 609
            +SPE L  +  + + +A +IY  + +
Sbjct: 543 AASPEQLQEVADVGEVVANRIYVFWRE 569


>gi|113969850|ref|YP_733643.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
 gi|113884534|gb|ABI38586.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
          Length = 690

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   FG+++ +  ++ E L  +E I + +A  + + F
Sbjct: 540 VGEATASNLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFF 584


>gi|302336117|ref|YP_003801324.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
 gi|301319957|gb|ADK68444.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
          Length = 747

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G     LL   FG+++ ++ ++ E +A ++GI  KIA  +   F
Sbjct: 587 GIRHVGASVANLLADRFGSMQALAAATEEDMAQVDGIGPKIAQSVRGFF 635


>gi|150402564|ref|YP_001329858.1| Hef nuclease [Methanococcus maripaludis C7]
 gi|150033594|gb|ABR65707.1| ERCC4 domain protein [Methanococcus maripaludis C7]
          Length = 749

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K R+K      + +  +GP+    LL +F +V+ I  +S   L ++EG+    A KI  
Sbjct: 686 KERQKFLV---EGLPDVGPVMAENLLDNFNSVEDIFTASEAELKAVEGVGPITAKKIRE 741


>gi|296171259|ref|ZP_06852663.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894227|gb|EFG73984.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 693

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I  +S E LA++EG+   IA  +   F
Sbjct: 533 SIRHVGPTAARALATEFGSLDAIMAASTERLAAVEGVGPTIAAALTEWF 581


>gi|325846528|ref|ZP_08169443.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481286|gb|EGC84327.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 668

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    R L + + +++ +  +  + L  +E I +K +  I   F+
Sbjct: 512 GIPNVGVKTARDLAEKYKSLENLRNAKEDDLVEVEDIGEKTSHDIVEFFN 561


>gi|296123087|ref|YP_003630865.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776]
 gi|296015427|gb|ADG68666.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776]
          Length = 707

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 27/50 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    ++L + FG++  +S  + E L++   + + IA  +++ FH
Sbjct: 550 NIRHVGQRTAQILAERFGSMDRLSAQTIEELSATPEVGEVIAQSVHHFFH 599


>gi|90579891|ref|ZP_01235699.1| DNA ligase [Vibrio angustum S14]
 gi|90438776|gb|EAS63959.1| DNA ligase [Vibrio angustum S14]
          Length = 670

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T++ IS+++ E L  +  +   +A  I+N F + 
Sbjct: 521 VGEATAANLANYFETLESISQATKEQLIEVPDVGDIVAAHIFNFFREE 568


>gi|289581647|ref|YP_003480113.1| helicase [Natrialba magadii ATCC 43099]
 gi|289531200|gb|ADD05551.1| helicase domain protein [Natrialba magadii ATCC 43099]
          Length = 829

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            I  IGP+  R LL+ FGTV+ +  ++ + L + +G+ +  A +
Sbjct: 773 SIAEIGPVTARSLLEEFGTVEAVMIATEDELQAADGVGQVTAER 816


>gi|205372454|ref|ZP_03225267.1| NAD-dependent DNA ligase LigA [Bacillus coahuilensis m4-4]
          Length = 635

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 17/120 (14%)

Query: 493 TIIS-IAKGPKRSAGMEKFFVKKGEALVLNM--RDPILYFIQRLRDEAHRFAITTHRKRR 549
            +IS + K        + +F+ + + + L        L  IQ         AI      R
Sbjct: 452 KVISQLFKEELIQDVADIYFLTQEQLIALERIGEKSALNLIQ---------AID---ASR 499

Query: 550 KKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + +    L    I  +G    + L Q F T+  +  +S E L  I+ I  K+A  I  +F
Sbjct: 500 ENSLEKLLFGLGIRHVGAKAAKTLAQEFDTLTNLQNASKEELIRIDEIGDKMADSIVQYF 559


>gi|288869689|ref|ZP_05975717.2| putative Ski2-type helicase [Methanobrevibacter smithii DSM 2374]
 gi|288861084|gb|EFC93382.1| putative Ski2-type helicase [Methanobrevibacter smithii DSM 2374]
          Length = 693

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           +G  R RLL+++FG    +S +S + L  +EGI  K+A K+ 
Sbjct: 648 LGRKRARLLMKTFG--DNLSEASEKELQKVEGIGPKLAGKVK 687


>gi|212696137|ref|ZP_03304265.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676766|gb|EEB36373.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 668

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    R L + + +++ +  +  + L  +E I +K +  I   F+
Sbjct: 512 GIPNVGVKTARDLAEKYKSLENLRNAKEDDLVEVEDIGEKTSHDIVEFFN 561


>gi|239827612|ref|YP_002950236.1| hypothetical protein GWCH70_2262 [Geobacillus sp. WCH70]
 gi|239807905|gb|ACS24970.1| conserved hypothetical protein [Geobacillus sp. WCH70]
          Length = 387

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PL+ I G+GP     LL  FGT + ++ +++ E L     I +K+A  I
Sbjct: 317 PLEFIPGLGPKTYEKLLARFGTEMYVLHQATEEELKQ--SIGEKLAKLI 363


>gi|56479083|ref|YP_160672.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
 gi|81356392|sp|Q5NYU3|DNLJ_AZOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56315126|emb|CAI09771.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
          Length = 681

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R L + FG++  +  +  E L  +  +   +A  I   F +
Sbjct: 526 GIRNVGEATARELARHFGSLDALMDADIERLQQVADVGPIVAHSIAGFFAE 576


>gi|309799923|ref|ZP_07694127.1| UvrABC system protein C [Streptococcus infantis SK1302]
 gi|308116450|gb|EFO53922.1| UvrABC system protein C [Streptococcus infantis SK1302]
          Length = 55

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++ F ++  I  +S + +  + GI + +A  ++ H +
Sbjct: 1   MKYFKSLTKIKEASVDEIVGV-GIPRAVAEAVHQHLN 36


>gi|332982901|ref|YP_004464342.1| RecD/TraA family ATP-dependent DNA helicase [Mahella australiensis
           50-1 BON]
 gi|332700579|gb|AEE97520.1| ATP-dependent DNA helicase, RecD/TraA family [Mahella australiensis
           50-1 BON]
          Length = 741

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           I GIGP   + L+Q FG  T+  + +  P+ L  IEGI K  A KI   F K  
Sbjct: 88  IAGIGPSTAKKLVQHFGEKTLD-VMQCDPDRLTEIEGIGKSKAEKIAASFAKQA 140


>gi|238752012|ref|ZP_04613496.1| DNA ligase [Yersinia rohdei ATCC 43380]
 gi|238709712|gb|EEQ01946.1| DNA ligase [Yersinia rohdei ATCC 43380]
          Length = 670

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  +  +  + L S+  + + +A  + N  ++ 
Sbjct: 520 VGEATAANLAAHFRTLANLRAADIDALKSVPDVGEVVAKHVLNFLNEE 567


>gi|212224798|ref|YP_002308034.1| DNA repair and recombination protein RadA [Thermococcus onnurineus
           NA1]
 gi|212009755|gb|ACJ17137.1| radA DNA repair protein rad51 [Thermococcus onnurineus NA1]
          Length = 353

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L+++ G+GP     L ++ + +++ I+ +SP  L  I GIS+  A KI     +  +
Sbjct: 41  LEDLPGVGPATAEKLREAGYDSIEAIAVASPMELKEIAGISEGAALKIIQAAREAAN 97


>gi|20807100|ref|NP_622271.1| NAD-dependent DNA ligase [Thermoanaerobacter tengcongensis MB4]
 gi|81482513|sp|Q8RC42|DNLJ_THETN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|20515592|gb|AAM23875.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 666

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + KK     L     IN IG    +++ + F ++  I ++  E    +  I  K+A  I 
Sbjct: 496 KSKKRDLDRLLFGLGINLIGSKAAQVIAEHFKSMDNIMKAKYEDFLELPDIGPKMARSIV 555

Query: 605 NHFHKNTS 612
             F +  +
Sbjct: 556 TFFSEEQN 563


>gi|227543584|ref|ZP_03973633.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
 gi|300909387|ref|ZP_07126848.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
 gi|227186424|gb|EEI66495.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
 gi|300893252|gb|EFK86611.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
          Length = 680

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R++++ FG +  + +++ + +++I GI   I   I  +F
Sbjct: 523 GIRHVGAKAARIIMEHFGDLDSLMKANDDEISAISGIGPTIGESIVTYF 571


>gi|118430925|ref|NP_147034.2| holliday junction migration helicase [Aeropyrum pernix K1]
 gi|150421571|sp|Q9YFQ8|HELS_AERPE RecName: Full=Putative ski2-type helicase
 gi|116062250|dbj|BAA79103.2| holliday junction migration helicase [Aeropyrum pernix K1]
          Length = 735

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L EI G+G +R R+L ++ + +++ ++ +  E L  +  I    A +I    
Sbjct: 648 QLVEIPGVGRVRARILFEAGYRSIEDLATARAEDLMRLPLIGPSTARQILEFL 700


>gi|227432449|ref|ZP_03914436.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351770|gb|EEJ42009.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 680

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    RL+ + F T+  +S +S E +A+I GI   IA  I  +F
Sbjct: 526 VGAKAARLIAEKFRTLSAVSEASVEDIANINGIGHTIAQSIVQYF 570


>gi|91793866|ref|YP_563517.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
 gi|123165936|sp|Q12L82|DNLJ_SHEDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|91715868|gb|ABE55794.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
          Length = 670

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 18/45 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F ++  +  +  E L  +  + + +A  I + F
Sbjct: 519 VGEATAANLANHFKSLAAVREAGVEQLLEVADVGEIVAKHIRHFF 563


>gi|116617684|ref|YP_818055.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272115|sp|Q03YP0|DNLJ_LEUMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116096531|gb|ABJ61682.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 680

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    RL+ + F T+  +S +S E +A+I GI   IA  I  +F
Sbjct: 526 VGAKAARLIAEKFRTLSAVSEASVEDIANINGIGHTIAQSIVQYF 570


>gi|311067136|ref|YP_003972059.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
 gi|310867653|gb|ADP31128.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
          Length = 668

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 550 KKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L+       I  IG    + L   F ++  + +++ E L +I+ I +K+A  +
Sbjct: 496 QKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLDHLKKANKEELLAIDEIGEKMADAV 555

Query: 604 YNHFHK 609
             +F K
Sbjct: 556 ITYFQK 561


>gi|299820617|ref|ZP_07052507.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601]
 gi|299818112|gb|EFI85346.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601]
          Length = 674

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L+       I  +G    R L   F T+  +  +S E L +I  I + +A  I 
Sbjct: 497 KSKQNSLERLLFGLGIRHVGAKAARSLAIHFETMDNVKEASLEDLIAINDIGEIMADSIV 556

Query: 605 NHFHKNTSHT 614
            +F     H+
Sbjct: 557 TYFENEEVHS 566


>gi|229085464|ref|ZP_04217705.1| hypothetical protein bcere0022_20780 [Bacillus cereus Rock3-44]
 gi|228697940|gb|EEL50684.1| hypothetical protein bcere0022_20780 [Bacillus cereus Rock3-44]
          Length = 124

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +    +E  
Sbjct: 45  GIFMFYNINDELLFVGKARKVRQRIKKHFEDNVSPIKNHR--DEVYRIDVCIVEDPMERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   + ++N+
Sbjct: 103 IYETYVINEFQAKYNV 118


>gi|91203661|emb|CAJ71314.1| strongly similar to competence protein DprA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 367

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            GIG    + L++ FG++  + ++    L  + GI  KIA  I  
Sbjct: 14  KGIGARTYQTLVERFGSIAGVFQAVKPELEKLPGIGGKIANAILE 58


>gi|322420083|ref|YP_004199306.1| DNA protecting protein DprA [Geobacter sp. M18]
 gi|320126470|gb|ADW14030.1| DNA protecting protein DprA [Geobacter sp. M18]
          Length = 359

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L  +  +G +    LL  FG+ +   ++S   L S++G+S   A  I  H
Sbjct: 8   ALKSVPQVGNVTFLRLLAHFGSPERALKASLRELGSVKGVSAAAARAIVQH 58


>gi|18977049|ref|NP_578406.1| ski2-like helicase [Pyrococcus furiosus DSM 3638]
 gi|18202135|sp|O73946|HELS_PYRFU RecName: Full=Putative ski2-type helicase
 gi|223365750|pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
 gi|223365751|pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
 gi|223365752|pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
 gi|223365753|pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
 gi|3374506|dbj|BAA32016.1| helicase [Pyrococcus furiosus]
 gi|18892686|gb|AAL80801.1| helicase [Pyrococcus furiosus DSM 3638]
          Length = 720

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           PL ++  +G  R R L  S F +++ IS++ PE L  IEGI  K    I+    KN
Sbjct: 647 PLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLGKN 702


>gi|313903518|ref|ZP_07836909.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
 gi|313466339|gb|EFR61862.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
          Length = 817

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 563 IGPLRKRLLL-QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G  R   LL + FGT++ +  + P+ L ++  I  +IA  +   F   
Sbjct: 573 VGE-RVAGLLARHFGTIQRLMAAGPDELMAVPEIGPRIAESVVIFFRDE 620


>gi|14520459|ref|NP_125934.1| DNA repair and recombination protein RadA [Pyrococcus abyssi GE5]
 gi|13878699|sp|Q9V233|RADA_PYRAB RecName: Full=DNA repair and recombination protein radA
 gi|5457674|emb|CAB49165.1| radA DNA repair protein rad51 : DNA repair and recombination
           protein radA [Pyrococcus abyssi GE5]
          Length = 356

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +++ G+GP     L ++ F T++ I+ +SP  L  + GIS+  A KI     K  +
Sbjct: 45  EDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAAN 100


>gi|327289261|ref|XP_003229343.1| PREDICTED: DNA excision repair protein ERCC-1-like [Anolis
           carolinensis]
          Length = 332

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 23/39 (58%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL +F ++  + ++S E L+   GI  + A ++++  H+
Sbjct: 275 LLSNFKSLANLVQASKEDLSLCPGIGPQKAKRLFDALHE 313


>gi|315223456|ref|ZP_07865313.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
 gi|314946629|gb|EFS98620.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
          Length = 662

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + + T++ +  ++ E L  ++ I  +IA  I N F
Sbjct: 512 VGETVAKKLARHYKTIEALENATVEQLVEVDEIGNQIASSIVNFF 556


>gi|311104688|ref|YP_003977541.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
 gi|310759377|gb|ADP14826.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
          Length = 702

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R + + FG++  I  +  + L+S+  +   +A  I   F +
Sbjct: 548 GIRHVGETTARDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRRFFAE 598


>gi|291513768|emb|CBK62978.1| DNA ligase, NAD-dependent [Alistipes shahii WAL 8301]
          Length = 674

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L + F ++  + R++ E L   + +  +IA  I  +F +  +
Sbjct: 513 VGETTAKYLAEHFRSLDAVMRATREELVEADEVGGRIADAIIEYFAEEDN 562


>gi|159028322|emb|CAO87220.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 669

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 30/46 (65%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +G +  ++L +SF TV+ ++ +S   LAS+ GI ++IA  +Y+ F 
Sbjct: 520 VGSVNAKILAESFRTVEELANASVTDLASVYGIGEEIAQSVYDWFR 565


>gi|315606212|ref|ZP_07881239.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312100|gb|EFU60190.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 777

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L  +F ++  +  +S E L+++EG+ ++I   + + F
Sbjct: 618 SIRHVGPTAARALADAFRSMDALRAASLEELSAVEGVGEEIGRSLRDWF 666


>gi|134300185|ref|YP_001113681.1| NAD-dependent DNA ligase [Desulfotomaculum reducens MI-1]
 gi|190359251|sp|A4J703|DNLJ_DESRM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|134052885|gb|ABO50856.1| DNA ligase, NAD-dependent [Desulfotomaculum reducens MI-1]
          Length = 670

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    ++L + FG+++ + +++ E L  I  I  +IA  I  +F +  + 
Sbjct: 515 GIRHVGERAAKILARQFGSMQALMQATAEDLTGISEIGPRIAESIMEYFSRQENQ 569


>gi|301777726|ref|XP_002924284.1| PREDICTED: DNA excision repair protein ERCC-1-like [Ailuropoda
           melanoleuca]
          Length = 306

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 259 QTLLTTFGSLEQLMAASREDLALCPGLGPQKARRLFDVLHE 299


>gi|78043193|ref|YP_359946.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123743192|sp|Q3AD38|DNLJ_CARHZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77995308|gb|ABB14207.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 664

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 551 KAAYSPLDE-ING-----IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L+  I G     +G    R L   F  +  +  +  E + +I  +  K+A  I 
Sbjct: 499 KSKQNSLERLIYGLGIRLVGEKAARDLAVHFKELDKLIAAGEEEIMAIPSVGPKMAASIK 558

Query: 605 NHFHKNTS 612
             F +  +
Sbjct: 559 AFFAQKEN 566


>gi|73948160|ref|XP_855116.1| PREDICTED: similar to DNA excision repair protein ERCC-1 [Canis
           familiaris]
          Length = 294

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 247 QTLLTTFGSLEQLMAASREDLALCPGLGPQKARRLFDVLHE 287


>gi|323499974|ref|ZP_08104932.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
 gi|323314991|gb|EGA68044.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
          Length = 669

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 26/52 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ +++++ E L ++  I + +A  I   F + ++  
Sbjct: 521 VGEATAANLAQHFKSLQAVTKATHEELIAVSDIGEIVASHITAFFAQESNQQ 572


>gi|270307935|ref|YP_003329993.1| DNA repair protein RadC [Dehalococcoides sp. VS]
 gi|270153827|gb|ACZ61665.1| DNA repair protein RadC [Dehalococcoides sp. VS]
          Length = 228

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL  FG    I+ +S E L+ ++GI    AC++   F
Sbjct: 52  QRLLAHFGGPSGIASASVEELSKLKGIGLAKACQLKAAF 90


>gi|88810628|ref|ZP_01125885.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
 gi|88792258|gb|EAR23368.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
          Length = 672

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G +  + L + +G +  + R++ E L  +  I   +A +I + F
Sbjct: 519 GIPEVGEVTAKRLAEHYGDLDPLERATEEALTRLPDIGPVLAQRITHFF 567


>gi|255994735|ref|ZP_05427870.1| helicase, RecD/TraA family [Eubacterium saphenum ATCC 49989]
 gi|255993448|gb|EEU03537.1| helicase, RecD/TraA family [Eubacterium saphenum ATCC 49989]
          Length = 741

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF--HKNTS 612
           I G+G  R  +++++FG  T+ +I     + L  + GISKK+A +I++++  HK   
Sbjct: 95  IKGVGEKRADIIIEAFGEKTLDIIEN-DYKKLEKLGGISKKLAKEIHDYYIEHKEEG 150


>gi|315231638|ref|YP_004072074.1| DNA repair and recombination RadA-like protein [Thermococcus
           barophilus MP]
 gi|315184666|gb|ADT84851.1| DNA repair and recombination RadA-like protein [Thermococcus
           barophilus MP]
          Length = 355

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L+++ G+GP     L ++ + +++ I+ +SP  L  I GIS+  A KI     +  +
Sbjct: 43  LEDLPGVGPATAEKLREAGYDSLEAIAVASPIELKEIAGISEGAALKIIQAAREAAN 99


>gi|189485676|ref|YP_001956617.1| DprA-like DNA processing protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287635|dbj|BAG14156.1| DprA-like DNA processing protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 364

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           IG +R   LL  FG  ++I ++S   L S+EGI + IA  I+N
Sbjct: 17  IGAIRFFRLLDKFGDTELILKASKRDLMSVEGIGQAIADTIFN 59


>gi|269103205|ref|ZP_06155902.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163103|gb|EEZ41599.1| DNA ligase [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 495

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T++ +  +S + L  +  + + +A  I+N F + 
Sbjct: 345 VGEATAANLAHYFETLEALMTASKDQLIEVPDVGEIVAAHIFNFFREE 392


>gi|299536161|ref|ZP_07049475.1| hypothetical protein BFZC1_09080 [Lysinibacillus fusiformis ZC1]
 gi|298728436|gb|EFI68997.1| hypothetical protein BFZC1_09080 [Lysinibacillus fusiformis ZC1]
          Length = 123

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +    +L+VGKA  +++RIK +   N    +      ++  I        +E  
Sbjct: 45  GIFLFYNDKNELLFVGKARKIRQRIKKHFEDNVSPMKNHR--DEVFKIEVYEVEDPMERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E   I   + ++N+
Sbjct: 103 IYETYAINTFRSKYNV 118


>gi|311694426|gb|ADP97299.1| NAD-dependent DNA ligase [marine bacterium HP15]
          Length = 678

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           +G    + L   FGT++ I+ +  E+L ++  +   +A  I + F + T +  T
Sbjct: 524 VGEATAKALAGHFGTLEAIAAADEESLQTVPDVGPIVAGHIRSFF-EQTHNRET 576


>gi|310657889|ref|YP_003935610.1| DNA ligase [Clostridium sticklandii DSM 519]
 gi|308824667|emb|CBH20705.1| DNA ligase, NAD(+)-dependent [Clostridium sticklandii]
          Length = 683

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           IG    + L   +  ++ I ++S E L  I+ I +K+A  I+  F    +
Sbjct: 518 IGTKAAKTLASVYSDIEQIKQASIEELLQIDEIGEKMAQSIFEFFKVEEN 567


>gi|322513636|ref|ZP_08066733.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
 gi|322120561|gb|EFX92462.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
          Length = 681

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 17/77 (22%)

Query: 550 KKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLASI 592
           KK+A + L+ I               GI   G    + L   F  ++ I  ++ E L  +
Sbjct: 502 KKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLEAIRMATFEQLQEV 561

Query: 593 EGISKKIACKIYNHFHK 609
           + + + +A +I   + +
Sbjct: 562 QDVGEVVANRIVRFWQE 578


>gi|309812136|ref|ZP_07705894.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
 gi|308433823|gb|EFP57697.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
          Length = 770

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKN 610
            I  +GP   R L   FG++  I  +   TLA+ +G+   IA  I   F    H+N
Sbjct: 553 SIRHVGPTAARALATQFGSIDAIRDADEATLAATDGVGAVIAHSIKEWFAVDWHEN 608


>gi|15897631|ref|NP_342236.1| RNA helicase (ATP dependent)/eIF4A (eiF4A) [Sulfolobus solfataricus
           P2]
 gi|284174956|ref|ZP_06388925.1| RNA helicase (ATP dependent)/eIF4A (eiF4A) [Sulfolobus solfataricus
           98/2]
 gi|6015747|emb|CAB57574.1| ATP-dependent RNA helicase, eIF-4A family [Sulfolobus solfataricus
           P2]
 gi|13813898|gb|AAK41026.1| RNA helicase (ATP dependent)/eIF4A (eiF4A) [Sulfolobus solfataricus
           P2]
 gi|261602399|gb|ACX92002.1| ERCC4 domain protein [Sulfolobus solfataricus 98/2]
          Length = 233

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +    +G +    LL  FGT++ I  +S   L    G S+K A  IY     + S T
Sbjct: 162 ESFPNVGSILAERLLLKFGTIQNICNASISELEKALG-SRKKAEDIYKILRTHYSKT 217


>gi|89896634|ref|YP_520121.1| hypothetical protein DSY3888 [Desulfitobacterium hafniense Y51]
 gi|122997178|sp|Q24QL5|DNLJ_DESHY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89336082|dbj|BAE85677.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 659

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    ++L Q +GT++ + ++  E L  I  +   +A  +   F + ++H
Sbjct: 509 GIRHVGEKAGKILAQKYGTMEDLEKAQVEELQEIPDVGPAMAQSVAQFFQQESTH 563


>gi|296109929|ref|YP_003616878.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
 gi|295434743|gb|ADG13914.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
          Length = 770

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + +  +G      LL+ F TV+ +  +S   L  +EG+ ++ A KI    
Sbjct: 715 ESLPDVGGALAERLLEHFKTVENVFTASERELMRVEGVGEERAKKIREVL 764


>gi|238919178|ref|YP_002932692.1| NAD-dependent DNA ligase LigA [Edwardsiella ictaluri 93-146]
 gi|238868746|gb|ACR68457.1| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146]
          Length = 672

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 21/48 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   FG+++ +  +  E+L  +  + + +A  I +   + 
Sbjct: 518 VGEATAANLASHFGSLQALRAADLESLKRVPEVGEVVASHIVHFLSEE 565


>gi|294631529|ref|ZP_06710089.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
 gi|292834862|gb|EFF93211.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
          Length = 732

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP+    L + F ++  I ++S E LA+ EG+ + IA  +   F + 
Sbjct: 552 SIRHVGPVAAEALAREFRSIDRIEQASEEELANTEGVGQIIAASLKEWFAEE 603


>gi|256820386|ref|YP_003141665.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
 gi|256581969|gb|ACU93104.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
          Length = 662

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + + T++ +  ++ E L  ++ I  +IA  I N F
Sbjct: 512 VGETVAKKLARHYKTIEALENATIEQLVEVDEIGNQIASSIVNFF 556


>gi|219667570|ref|YP_002458005.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
 gi|254781313|sp|B8FP44|DNLJ_DESHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219537830|gb|ACL19569.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
          Length = 659

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    ++L Q +GT++ + ++  E L  I  +   +A  +   F + ++H
Sbjct: 509 GIRHVGEKAGKILAQKYGTMEDLEKAQVEELQEIPDVGPAMAQSVAQFFQQESTH 563


>gi|301066103|ref|YP_003788126.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
 gi|300438510|gb|ADK18276.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
          Length = 674

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R+   +     L  I  +G    R+L + FG +  +  +S E +A +  I   IA
Sbjct: 502 AINNSRQNSVERLIFGL-GIRHVGGKAARILAEHFGDLDHLMTASQEAIADVPNIGPTIA 560

Query: 601 CKIYNHFH 608
             I  +F 
Sbjct: 561 EAIVTYFK 568


>gi|255531337|ref|YP_003091709.1| DNA protecting protein DprA [Pedobacter heparinus DSM 2366]
 gi|255344321|gb|ACU03647.1| DNA protecting protein DprA [Pedobacter heparinus DSM 2366]
          Length = 363

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  I  +G +  R LL  FG+ + I ++    L  I GI + +A +I NH
Sbjct: 9   LTLIKSVGDVIARNLLDQFGSAEAIFKADKYQLMEISGIGEVVATQILNH 58


>gi|227535466|ref|ZP_03965515.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227186876|gb|EEI66943.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 674

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R+   +     L  I  +G    R+L + FG +  +  +S E +A +  I   IA
Sbjct: 502 AINNSRQNSVERLIFGL-GIRHVGGKAARILAEHFGDLDHLMTASQEAIADVPNIGPTIA 560

Query: 601 CKIYNHFH 608
             I  +F 
Sbjct: 561 EAIVTYFK 568


>gi|239631844|ref|ZP_04674875.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526309|gb|EEQ65310.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 674

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R+   +     L  I  +G    R+L + FG +  +  +S E +A +  I   IA
Sbjct: 502 AINNSRQNSVERLIFGL-GIRHVGGKAARILAEHFGDLDHLMTASQEAIADVPNIGPTIA 560

Query: 601 CKIYNHFH 608
             I  +F 
Sbjct: 561 EAIVTYFK 568


>gi|191637997|ref|YP_001987163.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
           casei BL23]
 gi|254781352|sp|B3WD54|DNLJ_LACCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190712299|emb|CAQ66305.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
           casei BL23]
 gi|327382073|gb|AEA53549.1| DNA ligase [Lactobacillus casei LC2W]
 gi|327385217|gb|AEA56691.1| DNA ligase [Lactobacillus casei BD-II]
          Length = 674

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R+   +     L  I  +G    R+L + FG +  +  +S E +A +  I   IA
Sbjct: 502 AINNSRQNSVERLIFGL-GIRHVGGKAARILAEHFGDLDHLMTASQEAIADVPNIGPTIA 560

Query: 601 CKIYNHFH 608
             I  +F 
Sbjct: 561 EAIVTYFK 568


>gi|89097084|ref|ZP_01169975.1| DNA ligase [Bacillus sp. NRRL B-14911]
 gi|89088464|gb|EAR67574.1| DNA ligase [Bacillus sp. NRRL B-14911]
          Length = 668

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + L Q F ++  +  +S + L +I  I  K+A  I   F +  +
Sbjct: 511 GIRHVGAKAAKTLAQHFSSMDNLMAASEDDLTAINEIGGKMAGAIVAFFEQEEA 564


>gi|83814168|ref|YP_445312.1| DNA processing protein DprA [Salinibacter ruber DSM 13855]
 gi|83755562|gb|ABC43675.1| DNA processing protein DprA [Salinibacter ruber DSM 13855]
          Length = 388

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  ++G+GP R R LL +F T   I R+S  TL  ++G+  + A  I   
Sbjct: 26  LSLVSGVGPQRLRALLAAFETPTAIFRASRSTLTQVDGVGDQTAEAILTF 75


>gi|116493340|ref|YP_805075.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
 gi|122265196|sp|Q03DT9|DNLJ_PEDPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116103490|gb|ABJ68633.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
          Length = 675

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   RK   +   + L  I G+G    R L + FGT+  + +++ E   +++ I + +A
Sbjct: 503 AIDNSRKNSLERLINGL-GIQGVGTKMARTLAEKFGTMDNLMQTTIEEFDAVDTIGETLA 561

Query: 601 CKIYNHFHKN 610
             +   F  +
Sbjct: 562 NNLATFFQSD 571


>gi|325125239|gb|ADY84569.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 671

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           RK +    L    I+ +G    +L+ + F  +  I+ +S + L +I+ I   IA  +  +
Sbjct: 500 RKNSVELVLFGLGIDNVGGKAAQLIARKFKNMSKIASASVQELTAIDTIGMTIAESLTAY 559

Query: 607 FHKNTS 612
           F    +
Sbjct: 560 FQPEEA 565


>gi|317491275|ref|ZP_07949711.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920822|gb|EFV42145.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 678

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 22/48 (45%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   FG+++ +  +  E L S++ + + +A  + +   + 
Sbjct: 525 VGEATAANLAAHFGSLEALREADVEALKSVQDVGEVVAKHVRHFLGEE 572


>gi|152975618|ref|YP_001375135.1| excinuclease ABC subunit C [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024370|gb|ABS22140.1| Excinuclease ABC C subunit domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 124

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +    +E  
Sbjct: 45  GIFMFYNIHDELLFVGKARKIRQRIKKHFEDNVSPMKAHR--DEVYRIDVCLVEDPMERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I  L+ ++NI
Sbjct: 103 IYETYIINTLQAKYNI 118


>gi|163845839|ref|YP_001633883.1| DNA ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222523550|ref|YP_002568020.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
 gi|190359243|sp|A9WCA1|DNLJ_CHLAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781286|sp|B9LHI6|DNLJ_CHLSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163667128|gb|ABY33494.1| DNA ligase, NAD-dependent [Chloroflexus aurantiacus J-10-fl]
 gi|222447429|gb|ACM51695.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
          Length = 709

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 541 AITTHRKRRKKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           AI   R+R       PLD       I  +G +  + L+ + G++  I  +  E L  I G
Sbjct: 510 AIDAARQR-------PLDRLLVGLGIRYVGTVAAQTLVAALGSLDAIMAARQEELEQIPG 562

Query: 595 ISKKIACKIYNHF 607
           I   +A  I + F
Sbjct: 563 IGPVVAASIVDFF 575


>gi|322652148|gb|EFY48510.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
          Length = 571

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   FGT++ +  ++ + L  +  +   +A  ++N  
Sbjct: 520 VGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFL 564


>gi|304405678|ref|ZP_07387337.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9]
 gi|304345717|gb|EFM11552.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9]
          Length = 689

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 542 ITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           I    K + +   + L    I   G    ++L   FG++  + +++ E L  +  I   +
Sbjct: 510 IEAFEKSKSRDLAAFLFALGIPNTGKATTKVLADHFGSLDAVLQATEEQLVQLPDIGGIV 569

Query: 600 ACKIYNHF 607
           A  I + F
Sbjct: 570 ADSIVSFF 577


>gi|189425977|ref|YP_001953154.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
 gi|254781338|sp|B3E8F8|DNLJ_GEOLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189422236|gb|ACD96634.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
          Length = 683

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R L + FG++  +  ++ E L SI  +   +A  I + F
Sbjct: 528 GIRHVGERTARTLAERFGSIDNLQTATLEELTSIRDVGPAVAISIRSFF 576


>gi|145590377|ref|YP_001152379.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum
           arsenaticum DSM 13514]
 gi|145282145|gb|ABP49727.1| DEAD/DEAH box helicase domain protein [Pyrobaculum arsenaticum DSM
           13514]
          Length = 710

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 562 GIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           G+G +R R+L    F T++ I+R+S   +AS+ G  +K+A  I  
Sbjct: 656 GVGRVRARVLYNFGFRTLRDIARASVREIASLPGFGEKLAESIIE 700


>gi|262382012|ref|ZP_06075150.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B]
 gi|262297189|gb|EEY85119.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B]
          Length = 664

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  +   S L+E              I  +G    + L  +F +++ + ++S E L +++
Sbjct: 485 KSAQNLMSSLEESKQVPFERVLFGLGIRFVGETVAKRLASAFHSIEALEQASLEDLVAVD 544

Query: 594 GISKKIACKIYNHFHKNTSHT 614
            I ++IA  + ++F    + T
Sbjct: 545 EIGERIAQSVLSYFSDEKNRT 565


>gi|257069044|ref|YP_003155299.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
 gi|256559862|gb|ACU85709.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
          Length = 871

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L  ++G++  I  +S E L+  +G+ + IA  +   F
Sbjct: 680 SIRHVGPTAARSLATAYGSMDAIREASVEQLSDTDGVGEIIAEAVVEWF 728


>gi|330751993|emb|CBL80506.1| DNA ligase [uncultured Polaribacter sp.]
          Length = 665

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 20/44 (45%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +G    + L + F ++  +  ++ E L   + I  +IA  I + 
Sbjct: 515 VGETVAKKLAKHFKSIDHLMTATFEELIKADEIGDRIAQSILDF 558


>gi|258508011|ref|YP_003170762.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
 gi|257147938|emb|CAR86911.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
 gi|259649339|dbj|BAI41501.1| DNA ligase [Lactobacillus rhamnosus GG]
          Length = 674

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R+L + FG++  +  +  + +A+I  I   IA  +  +F  +T
Sbjct: 519 GIRHVGGKAARILAEHFGSLDELMAADQDQVAAIPNIGPTIAEAVVTYFKTDT 571


>gi|229551868|ref|ZP_04440593.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
 gi|258539286|ref|YP_003173785.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
 gi|229314812|gb|EEN80785.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
 gi|257150962|emb|CAR89934.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
          Length = 674

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R+L + FG++  +  +  + +A+I  I   IA  +  +F  +T
Sbjct: 519 GIRHVGGKAARILAEHFGSLDELMAADQDQVAAIPNIGPTIAEAVVTYFKTDT 571


>gi|207110232|ref|ZP_03244394.1| excinuclease ABC subunit C [Helicobacter pylori HPKX_438_CA4C1]
          Length = 121

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 300 PENILLS-EEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLST 358
           PE ILL+    E    L+     QY  K+ +++PK+G+K  +IE A+ NA          
Sbjct: 8   PEQILLNACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIETAMKNAQE--IFSQEK 65

Query: 359 EISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
             +  +IL++    F L  +P R+EI+D SH      VG MVV   N F KN YR+
Sbjct: 66  TSNEDLILEEARSLFKLECVPYRVEIFDTSHHSSSQCVGGMVVYENNAFQKNSYRR 121


>gi|199597353|ref|ZP_03210784.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
 gi|199591869|gb|EDY99944.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
          Length = 674

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R+L + FG++  +  +  + +A+I  I   IA  +  +F  +T
Sbjct: 519 GIRHVGGKAARILAEHFGSLDELMAADQDQVAAIPNIGPTIAEAVVTYFKTDT 571


>gi|332159494|ref|YP_004424773.1| ski2-like helicase [Pyrococcus sp. NA2]
 gi|331034957|gb|AEC52769.1| ski2-like helicase [Pyrococcus sp. NA2]
          Length = 715

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 542 ITTHRKRRKKAAYS------PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEG 594
           I   R  R +  +       PL E+  IG  R R L  + F  +  I  + P  L  +EG
Sbjct: 622 IEYLRVLRIRVKHGIREELIPLMELPSIGRKRARALYNAGFKDLDSIRNARPSELLRVEG 681

Query: 595 ISKKIACKIYNHFHKN 610
           I  K    +  +  ++
Sbjct: 682 IGAKTVEAMLRYLGRD 697


>gi|125972980|ref|YP_001036890.1| DNA protecting protein DprA [Clostridium thermocellum ATCC 27405]
 gi|256004777|ref|ZP_05429752.1| DNA protecting protein DprA [Clostridium thermocellum DSM 2360]
 gi|281417191|ref|ZP_06248211.1| DNA protecting protein DprA [Clostridium thermocellum JW20]
 gi|125713205|gb|ABN51697.1| DNA protecting protein DprA [Clostridium thermocellum ATCC 27405]
 gi|255991227|gb|EEU01334.1| DNA protecting protein DprA [Clostridium thermocellum DSM 2360]
 gi|281408593|gb|EFB38851.1| DNA protecting protein DprA [Clostridium thermocellum JW20]
 gi|316940784|gb|ADU74818.1| DNA protecting protein DprA [Clostridium thermocellum DSM 1313]
          Length = 370

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           L  I GIG ++ R LL+ FG +  +  ++   LA +  +++K
Sbjct: 11  LSSIPGIGAVKSRKLLEHFGDIHNVWSATAAELAVLPFLNRK 52


>gi|238855396|ref|ZP_04645707.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
 gi|260665363|ref|ZP_05866211.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
 gi|282932093|ref|ZP_06337550.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|238831994|gb|EEQ24320.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
 gi|260560867|gb|EEX26843.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
 gi|281303772|gb|EFA95917.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
          Length = 669

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R+   +   + L  I+ +G     L++Q F  +  I ++S   L +I+ I + IA
Sbjct: 496 AIDNSRQNSVELLLNGL-GIDHVGAKAALLIVQRFKNLNKIMQASVSELTAIDTIGETIA 554

Query: 601 CKIYNHF 607
             I  +F
Sbjct: 555 ESITTYF 561


>gi|16080315|ref|NP_391142.1| excinuclease [Bacillus subtilis subsp. subtilis str. 168]
 gi|221311206|ref|ZP_03593053.1| hypothetical protein Bsubs1_17696 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315533|ref|ZP_03597338.1| hypothetical protein BsubsN3_17612 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320448|ref|ZP_03601742.1| hypothetical protein BsubsJ_17575 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324732|ref|ZP_03606026.1| hypothetical protein BsubsS_17726 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312808|ref|YP_004205095.1| putative excinuclease [Bacillus subtilis BSn5]
 gi|3915567|sp|O32158|YURQ_BACSU RecName: Full=Uncharacterized protein yurQ
 gi|2635759|emb|CAB15252.1| putative excinuclease [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485732|dbj|BAI86807.1| putative excinuclease [Bacillus subtilis subsp. natto BEST195]
 gi|320019082|gb|ADV94068.1| putative excinuclease [Bacillus subtilis BSn5]
          Length = 124

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  L++RIK +        +      ++  I   V    +E  
Sbjct: 45  GIFMFYNIHDELLFVGKARKLRQRIKKHFEDTVSPIKHHR--DEVYKIEVCVVDDPMERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I     ++NI
Sbjct: 103 IYETYIINTQHSKYNI 118


>gi|300114089|ref|YP_003760664.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
 gi|299540026|gb|ADJ28343.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
          Length = 675

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    ++L + FG++  ++ +S E L  +  I   +A  I   F +
Sbjct: 522 VGEATAQVLTKEFGSLAALASASEERLQQVVDIGPVVAAHIAAFFRQ 568


>gi|294497111|ref|YP_003560811.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
 gi|294347048|gb|ADE67377.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
          Length = 668

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 541 AITTHRKRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           AI       KK +   L     I  +G    + L Q F T+  +++++ + L +I  I  
Sbjct: 494 AIGA----SKKNSLERLLFGLGIRHVGAKAAKTLAQHFETIDKLTKATYDELVAINEIGA 549

Query: 598 KIACKIYNHFHKNT 611
           K+A  I  +F +  
Sbjct: 550 KMADAIVAYFTQEE 563


>gi|254468809|ref|ZP_05082215.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
 gi|207087619|gb|EDZ64902.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
          Length = 669

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + +++  GT+  + ++S +    I  +   +A  ++  F ++ +  
Sbjct: 516 GIRNVGEATSKDIVKKLGTLDNVMKASIDDFLEINDVGPVVAQSLHQFFQEDENKA 571



 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

Query: 559 EINGIGPLRKRLLLQSF------GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I G+G      ++  F        +  I     E +  +EG  ++ A  +      +  
Sbjct: 450 NIEGLGAK----IIDHFFEKGLIKNISDIYHLDYEEIQKMEGFGERSAENLKEAIESSKK 505

Query: 613 HT 614
            T
Sbjct: 506 TT 507


>gi|148642899|ref|YP_001273412.1| ATP-dependent helicase [Methanobrevibacter smithii ATCC 35061]
 gi|148551916|gb|ABQ87044.1| ATP-dependent helicase [Methanobrevibacter smithii ATCC 35061]
          Length = 693

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           +G  R RLL+++FG    +S +S + L  +EGI  K+A K+ 
Sbjct: 648 LGRKRARLLMKTFG--DNLSEASEKDLQKVEGIGPKLAGKVK 687


>gi|322372151|ref|ZP_08046692.1| 50S ribosomal protein L32e [Haladaptatus paucihalophilus DX253]
 gi|320548160|gb|EFW89833.1| 50S ribosomal protein L32e [Haladaptatus paucihalophilus DX253]
          Length = 234

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++I+G+G  +   L ++ + +V+ I  +S + L+ ++GI   +A +I  
Sbjct: 9   EDISGVGESKAESLREAGYESVEDIKAASQDDLSEVDGIGNALAARIKA 57


>gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
 gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
          Length = 675

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 19/45 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   FG+++ I  +  ++L  +  +   +A  +   F
Sbjct: 523 VGEATALALATYFGSIEAIRAADLDSLLEVPDVGPVVAQHLRAFF 567


>gi|293188969|ref|ZP_06607703.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
 gi|292822104|gb|EFF81029.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
          Length = 777

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L + F ++  +  +S E L+++EG+ ++I   + + F
Sbjct: 618 SIRHVGPTAARALAEKFLSMDALRAASVEELSAVEGVGEEIGRSLRDWF 666


>gi|154507531|ref|ZP_02043173.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799320|gb|EDN81740.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
           17982]
          Length = 777

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L + F ++  +  +S E L+++EG+ ++I   + + F
Sbjct: 618 SIRHVGPTAARALAEKFLSMDALRAASVEELSAVEGVGEEIGRSLRDWF 666


>gi|319790038|ref|YP_004151671.1| PHP domain protein [Thermovibrio ammonificans HB-1]
 gi|317114540|gb|ADU97030.1| PHP domain protein [Thermovibrio ammonificans HB-1]
          Length = 575

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPE--TLASIEGISKKIACKIYN 605
           L +I G+GP   +LL +  G  +++ + R+  E   L  + G   K   KI  
Sbjct: 93  LLDIPGVGPKTVKLLYEELGIRSIEDLKRA-IERGELLKLPGFGPKRVEKIKK 144


>gi|154492286|ref|ZP_02031912.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC
           43184]
 gi|154087511|gb|EDN86556.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC
           43184]
          Length = 666

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 29/52 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G    + L+ +F +++ + ++S E L +++ I ++IA  I  +F    + T
Sbjct: 515 VGETVAKRLVSAFHSMEQLEQASFEDLTAVDEIGERIARSIIAYFADERNRT 566


>gi|104773603|ref|YP_618583.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|122984006|sp|Q1GBF7|DNLJ_LACDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|103422684|emb|CAI97297.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 671

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           RK +    L    I+ +G    +L+ + F  +  I+ +S + L +I+ I   IA  +  +
Sbjct: 500 RKNSVELVLFGLGIDNVGGKAAQLIARKFKNMSKIASASVQELTAIDTIGMTIAESLTAY 559

Query: 607 FHKNTS 612
           F +  +
Sbjct: 560 FQQEEA 565


>gi|313125807|ref|YP_004036077.1| LSU ribosomal protein l32e [Halogeometricum borinquense DSM 11551]
 gi|312292172|gb|ADQ66632.1| LSU ribosomal protein L32E [Halogeometricum borinquense DSM 11551]
          Length = 234

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L++I+G+GP +   L ++ + +V+ +  ++   LA + GI   +A +I  
Sbjct: 8   ELEDISGVGPSKADALSEAGYESVEDVKAANQSELADVSGIGNALAARIKA 58


>gi|269968476|ref|ZP_06182487.1| DNA ligase [Vibrio alginolyticus 40B]
 gi|269826910|gb|EEZ81233.1| DNA ligase [Vibrio alginolyticus 40B]
          Length = 690

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   F T+  I  ++ E L  ++ I   +A  I   F +  +  
Sbjct: 541 VGEATAANLAMHFKTLGAIQNATEEQLIEVQDIGAVVAQHITTFFSEEQNQA 592


>gi|91225892|ref|ZP_01260861.1| DNA ligase [Vibrio alginolyticus 12G01]
 gi|91189542|gb|EAS75818.1| DNA ligase [Vibrio alginolyticus 12G01]
          Length = 670

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   F T+  I  ++ E L  ++ I   +A  I   F +  +  
Sbjct: 521 VGEATAANLAMHFKTLGAIQNATEEQLIEVQDIGAVVAQHITTFFSEEQNQA 572


>gi|311897183|dbj|BAJ29591.1| hypothetical protein KSE_37930 [Kitasatospora setae KM-6054]
          Length = 283

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKA-YNLQKRIKSYMHSNNHTHRIT--HMISQINNIRF 60
           +++ E  GVYQ+  + G  +YVGKA  +L  R+++++   +   RI    M         
Sbjct: 47  KELKERAGVYQLY-LDGEFVYVGKADKSLPARLRNHLRKLSGRRRIALGEM-----TFSC 100

Query: 61  TVTCTEVEALLLEANMIKRLK 81
                +  AL  E  +I   K
Sbjct: 101 LYVAEDFSALAPEQLLISHHK 121


>gi|296393986|ref|YP_003658870.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
 gi|296181133|gb|ADG98039.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
          Length = 690

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +GP   R L   FG+V  I  +  +TLA ++G+   IA  +   F 
Sbjct: 536 SIRHVGPTAARALATRFGSVDAIFSADEQTLAEVDGVGPTIAASVIEWFQ 585


>gi|197119085|ref|YP_002139512.1| DNA uptake/processing protein SMF [Geobacter bemidjiensis Bem]
 gi|197088445|gb|ACH39716.1| DNA uptake/processing protein SMF [Geobacter bemidjiensis Bem]
          Length = 359

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI--YNHFHKNTSH 613
           +G +    LL  FGT + +  +SP+ L+ + G+S + A  I  +++ H+ +S 
Sbjct: 15  VGNVTFLRLLSRFGTPERVLEASPQELSEVRGVSPQAATSIAGHDYAHQASSE 67


>gi|322437173|ref|YP_004219385.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
 gi|321164900|gb|ADW70605.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
          Length = 704

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + KKA  S +     I  +G     LL   FG ++ +  ++ + L  +  I   +A  +
Sbjct: 535 AKSKKAPLSRVLLGLGIRHVGQRTAELLASHFGAIEPLMGATQDELVQVNEIGPIVAATV 594

Query: 604 YNHFHKNTSHT 614
           ++ F +  +  
Sbjct: 595 HDFFAQEQNQA 605


>gi|225175754|ref|ZP_03729747.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1]
 gi|225168678|gb|EEG77479.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1]
          Length = 361

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           EI G+G +  R LLQ F T + I R++   L S+ GI +K A  I 
Sbjct: 3   EIKGLGSVTCRKLLQVFQTPEEIYRAAKGDLLSVAGIGEKTAEIIL 48


>gi|11498598|ref|NP_069826.1| DNA repair and recombination protein RadA [Archaeoglobus fulgidus
           DSM 4304]
 gi|3914552|sp|O29269|RADA_ARCFU RecName: Full=DNA repair and recombination protein radA
 gi|2649602|gb|AAB90248.1| DNA repair protein RAD51 (radA) [Archaeoglobus fulgidus DSM 4304]
          Length = 337

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L++I G+GP   R L ++ + T++ ++ +SP  LA++ GI++  A KI     K
Sbjct: 13  ELEDIPGVGPETARKLREAGYSTIEAVAVASPSELANVGGITEGNAVKIIQAARK 67


>gi|313884866|ref|ZP_07818618.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619557|gb|EFR30994.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
          Length = 673

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 24/115 (20%)

Query: 508 EKFFVKKGEALVLN--MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLD------E 559
           + + +   + L L           +Q +  EA              +  + L+       
Sbjct: 470 DLYHLTLADLLKLPNTKEKSAQKLLQAI--EA--------------SKTNSLERLLFGFG 513

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           I  +G    RL+ Q F T++ +S++S E + +I+GI   IA  + +      SH 
Sbjct: 514 IRHVGAKAARLVAQKFDTIEALSQASEEEITNIDGIGTIIAKSLVDFLQDEASHA 568


>gi|254445017|ref|ZP_05058493.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
 gi|198259325|gb|EDY83633.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
          Length = 668

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L ++ G V+ +S +S E L  I+GI +K A  I  +F    + T
Sbjct: 515 GIPQVGASAAKDLAKALGGVRELSEASVERLVEIDGIGEKTASGIVAYFGDERNKT 570


>gi|167465474|ref|ZP_02330563.1| DNA ligase, NAD-dependent [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 579

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           AI    K +++   S L    I   G    ++L + F ++  +  +  E L ++  +   
Sbjct: 404 AIE---KSKERDLSSFLFALGIPNTGKTTTKVLAEHFRSLDKVMDAVVEELIALPDVGGI 460

Query: 599 IACKIYNHFH 608
           +A  IY  F 
Sbjct: 461 VADSIYTFFR 470


>gi|147678862|ref|YP_001213077.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
 gi|190359268|sp|A5CZ68|DNLJ_PELTS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146274959|dbj|BAF60708.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
          Length = 679

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    ++L   + ++  +  ++ E L +I  I  KIA  I   F    +
Sbjct: 525 GIRHVGERAAKILANHYQSLSGLMSATQEELVNIPEIGPKIAASIVEFFSNEQN 578


>gi|15613212|ref|NP_241515.1| NAD-dependent DNA ligase LigA [Bacillus halodurans C-125]
 gi|15213980|sp|Q9KF37|DNLJ_BACHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|10173263|dbj|BAB04368.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bacillus
           halodurans C-125]
          Length = 669

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 552 AAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  S L+       I  +G    + L   F T+  + R+S + L ++  I +K+A  I +
Sbjct: 498 SKKSSLERLLFGLGIRFVGSKAAKTLAMHFPTMTELRRASYDELIAVNEIGEKMAASIVS 557

Query: 606 HFHK 609
           +F K
Sbjct: 558 YFEK 561


>gi|300813135|ref|ZP_07093512.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300495889|gb|EFK31034.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 671

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           RK +    L    I+ +G    +L+ + F  +  I+ +S + L +I+ I   IA  +  +
Sbjct: 500 RKNSVELVLFGLGIDNVGGKAAQLIARKFKNMSKIASASVQELTAIDTIGMTIAESLTAY 559

Query: 607 FHKNTS 612
           F +  +
Sbjct: 560 FQQEEA 565


>gi|291414832|ref|XP_002723664.1| PREDICTED: excision repair cross-complementing 1 isofrom 2-like
           [Oryctolagus cuniculus]
          Length = 301

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S + LA   G+  + A ++Y+  H+
Sbjct: 254 QTLLATFGSLEQLIAASRDDLALCPGLGPQKARRLYDVLHE 294


>gi|87119444|ref|ZP_01075341.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
 gi|86164920|gb|EAQ66188.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
          Length = 676

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 26/93 (27%)

Query: 528 YFIQRLRDEA------HRF--AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK 579
             +  +  EA      HRF  A+                 I  +G    R L + F T+ 
Sbjct: 497 KLLTSI--EASKQTEFHRFIYALG----------------IREVGEATARTLTRHFKTLD 538

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  ++ E+L  ++ +   +A  +   F K+++
Sbjct: 539 KIIEANTESLVKVDDVGPIVAQHLRRFFFKDSN 571


>gi|254495534|ref|ZP_05108458.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
 gi|85819890|gb|EAQ41047.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
          Length = 665

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +G    + L + F ++  +  +  ETL +++ I  +IA  I + 
Sbjct: 515 VGETVAKKLAKHFKSIDNLMAADFETLVAVDEIGDRIAQSIIDF 558


>gi|269960659|ref|ZP_06175031.1| DNA ligase [Vibrio harveyi 1DA3]
 gi|269834736|gb|EEZ88823.1| DNA ligase [Vibrio harveyi 1DA3]
          Length = 670

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F  +  I +++ E L  ++ I   +A  I   F +  +  
Sbjct: 521 VGEATAANLAQHFKNLDAIQQATEEQLIEVQDIGVIVAKHITTFFDEEKNQA 572


>gi|228997675|ref|ZP_04157283.1| hypothetical protein bmyco0003_22470 [Bacillus mycoides Rock3-17]
 gi|229005264|ref|ZP_04162981.1| hypothetical protein bmyco0002_22030 [Bacillus mycoides Rock1-4]
 gi|228756026|gb|EEM05354.1| hypothetical protein bmyco0002_22030 [Bacillus mycoides Rock1-4]
 gi|228762085|gb|EEM11023.1| hypothetical protein bmyco0003_22470 [Bacillus mycoides Rock3-17]
          Length = 124

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  +++RIK +   N     I     ++  I   +    +E  
Sbjct: 45  GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSP--IQAHRDEVYRIDACIVEDPMERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   + ++N+
Sbjct: 103 IYETYIINEFQAKYNV 118


>gi|94971682|ref|YP_593730.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
           Ellin345]
 gi|122986011|sp|Q1IHJ4|DNLJ_ACIBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94553732|gb|ABF43656.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
           Ellin345]
          Length = 673

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 17/80 (21%)

Query: 550 KKAAYSPLDEING-----------------IGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           KK+A + LDEI G                 +G    + L + FG++  + +++ E L  +
Sbjct: 496 KKSAQNILDEIKGTKKLPLERVIYGLGIRMVGERTAQFLAEHFGSLDGVMKATEEELLEV 555

Query: 593 EGISKKIACKIYNHFHKNTS 612
           E +  +IA  I+  F + ++
Sbjct: 556 EEVGPRIAQSIHEFFAEPSN 575


>gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
 gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
          Length = 678

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G      L   + ++  +  +  E+L +++ I + +A  + 
Sbjct: 508 KSKQTTLARFIYALGIREVGEATAANLASHYASLDAVMAADEESLKAVQDIGEVVAKHVV 567

Query: 605 NHFHKN 610
           N FH+ 
Sbjct: 568 NFFHEE 573


>gi|328869954|gb|EGG18329.1| BRCT domain-containing protein [Dictyostelium fasciculatum]
          Length = 842

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I G+G    + L + F T++ ++ +S + +  +  +   I+  IY +FH     +
Sbjct: 663 GIPGVGKASCKWLAERFTTIESLATASLQDIEVVGDLGPNISTNIYYYFHPTDQQS 718


>gi|168187649|ref|ZP_02622284.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
 gi|169294495|gb|EDS76628.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
          Length = 649

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+ +  L+       +  +G    +LL++ F +++ +   + E + SI+GI   +  +IY
Sbjct: 482 KSKHCKLENFIFALGVPSVGLGTAKLLVKKFKSIEKVMNCNLEEIYSIDGIGDVVGNEIY 541

Query: 605 NHF 607
           N+F
Sbjct: 542 NYF 544


>gi|313123177|ref|YP_004033436.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279740|gb|ADQ60459.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 671

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           RK +    L    I+ +G    +L+ Q F  +  I+ +S + L +I+ I   IA  +  +
Sbjct: 500 RKNSVELVLFGLGIDNVGRKAAQLIAQKFKNMSKIASASVQELTAIDTIGMTIAESLTAY 559

Query: 607 FHKNTS 612
           F +  +
Sbjct: 560 FQQEEA 565


>gi|317401960|gb|EFV82562.1| DNA ligase [Achromobacter xylosoxidans C54]
          Length = 699

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R + + FG+++ I  +  + L+S+  +   +A  I   F +
Sbjct: 547 GIRHVGETTARDVARHFGSIEAIMDADEDALSSVPDVGPVVAGSIRRFFAE 597


>gi|215412865|ref|ZP_03421575.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis
           94_M4241A]
 gi|298526485|ref|ZP_07013894.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496279|gb|EFI31573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
           94_M4241A]
          Length = 691

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+ +S + +A++EG+   IA  +   F
Sbjct: 533 SIRHVGPTAARALATEFGSLDAIAAASTDQVAAVEGVGPTIAAAVTEWF 581


>gi|305667253|ref|YP_003863540.1| DNA ligase [Maribacter sp. HTCC2170]
 gi|88708187|gb|EAR00425.1| DNA ligase [Maribacter sp. HTCC2170]
          Length = 664

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L +++  +  +  +S E L +++ I ++IA  +   F    +
Sbjct: 515 VGETVAKKLAKAYKNIDALMAASSEELIAVDEIGERIAQSVVEFFQNERN 564


>gi|304317508|ref|YP_003852653.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779010|gb|ADL69569.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 659

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ IG     +L   F T+  +  +S + L +IE +  K+A  I   F +  +
Sbjct: 507 GIDLIGSKAASILANHFKTMDSLEEASFDELTNIEEVGPKMADSIIAFFKEKQN 560


>gi|269957188|ref|YP_003326977.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894]
 gi|269305869|gb|ACZ31419.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894]
          Length = 830

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 546 RKRRK---KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           R + K   +   S    I  +GP+  R L   FG++  I  +S E LA++EG+   I  +
Sbjct: 631 RAKTKDLWRQLVS--LNIRHVGPVAARALADWFGSLDAIRAASSEELAAVEGVGPVIGAE 688

Query: 603 IYNHF 607
           +   F
Sbjct: 689 LQAWF 693


>gi|222055066|ref|YP_002537428.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
 gi|254781339|sp|B9M861|DNLJ_GEOSF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|221564355|gb|ACM20327.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
          Length = 669

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 541 AI--TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           AI  + HR+    + +     I  +G    +LL  +FG+V+ + +++ E L SI  +  +
Sbjct: 501 AIEASKHREL---SRFIFALGIRHVGEHTAKLLASAFGSVEHLEKATEEELLSIREVGPQ 557

Query: 599 IACKIYNHFHKNTS 612
           +A  +   F    +
Sbjct: 558 VAQSVRTFFRNPAN 571


>gi|88802793|ref|ZP_01118320.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
 gi|88781651|gb|EAR12829.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
          Length = 361

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
            +P+  GV+ + D  G+VLY+G+  N+   +         T R   +  +  +I +  T 
Sbjct: 192 SVPKYLGVFYIHDKNGKVLYLGRGKNINAEVNKLFLK--ETKRALKLQDRAISITYEKTG 249

Query: 65  TEVEALLLEANMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHR 112
            E+ + L     ++ L P++NI     K  P++   +      L K R
Sbjct: 250 NELFSRLKYYLQLETLSPKYNIK---KKRKPFLHNFNNDNFIILDKGR 294


>gi|238785571|ref|ZP_04629551.1| DNA ligase [Yersinia bercovieri ATCC 43970]
 gi|238713506|gb|EEQ05538.1| DNA ligase [Yersinia bercovieri ATCC 43970]
          Length = 670

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 18/48 (37%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F  +  +  +  + L S+  + + +A  + N   + 
Sbjct: 520 VGEATAANLAAHFRNMANLRAADIDELKSVPDVGEVVAKHVLNFLGEE 567


>gi|297566494|ref|YP_003685466.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
 gi|296850943|gb|ADH63958.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
          Length = 670

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R L + FG +  +  +S + L  +E ++   A +IY   H+  
Sbjct: 519 GIPQVGAALARTLARRFGHLDRLLAASVQDLDEVEDVALPTAERIYQTLHQKD 571


>gi|163757008|ref|ZP_02164114.1| DNA ligase [Kordia algicida OT-1]
 gi|161323012|gb|EDP94355.1| DNA ligase [Kordia algicida OT-1]
          Length = 665

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L + + ++  +  +S   L +++ I  KIA  +   F ++ +
Sbjct: 516 VGETVAKKLAKHYKSIDALMNASSNDLVNVDEIGVKIAESVAQFFAEDVN 565


>gi|119025970|ref|YP_909815.1| LigA [Bifidobacterium adolescentis ATCC 15703]
 gi|166215398|sp|A1A200|DNLJ_BIFAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118765554|dbj|BAF39733.1| LigA [Bifidobacterium adolescentis ATCC 15703]
          Length = 892

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   R +  +FGT+  I  +S + L+ I+GI  +IA  +   F
Sbjct: 735 LGPPTARTIASAFGTLDAIEHASVDELSQIDGIGSEIAESVVTWF 779


>gi|327438552|dbj|BAK14917.1| NAD-dependent DNA ligase [Solibacillus silvestris StLB046]
          Length = 665

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L   F T+  +  ++ E L  I  I  K+A  I  +F    
Sbjct: 510 GIRHVGEKAAKILAAHFETIDALMVATEEDLKDIHEIGDKMAESIVAYFANEQ 562


>gi|212715716|ref|ZP_03323844.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661083|gb|EEB21658.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM
           16992]
          Length = 891

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   R++  + G++  I R+S + L+ I+GI  +IA  +   F
Sbjct: 735 LGPPTARVIANTLGSLDAIERASVDELSQIDGIGPEIAESVVTWF 779


>gi|325102906|ref|YP_004272560.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145]
 gi|324971754|gb|ADY50738.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145]
          Length = 670

 Score = 51.3 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           +G    + L   F  ++ +  +S E L   E I ++IA  I  +F   T
Sbjct: 520 VGETVAKKLALHFKNIQNLQHASFEQLIEAEEIGERIAQSILEYFSDET 568


>gi|126661836|ref|ZP_01732835.1| DNA ligase [Flavobacteria bacterium BAL38]
 gi|126625215|gb|EAZ95904.1| DNA ligase [Flavobacteria bacterium BAL38]
          Length = 663

 Score = 51.3 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L + + ++  I+ +S   L  ++ I  KIA  +   F    +
Sbjct: 513 VGETVAKKLAKHYKSIDAIANASVMDLILVDEIGDKIAQSVMQFFDNQEN 562


>gi|332158421|ref|YP_004423700.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2]
 gi|331033884|gb|AEC51696.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2]
          Length = 354

 Score = 51.3 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +++ G+GP     L ++ + +++ I+ +SP  L  + GIS+  A KI     K  +
Sbjct: 43  EDLPGVGPATAEKLREAGYDSLEAIAVASPIELKEVAGISEGAALKIIQAARKAAN 98


>gi|298249593|ref|ZP_06973397.1| helicase, RecD/TraA family [Ktedonobacter racemifer DSM 44963]
 gi|297547597|gb|EFH81464.1| helicase, RecD/TraA family [Ktedonobacter racemifer DSM 44963]
          Length = 757

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I GIGP+  + ++  F   T+++I ++S   L  + GI    A KI
Sbjct: 103 KYLGSGL--IKGIGPVTAKRIVAHFQLDTLEIIEQASAR-LVEVPGIGASRAQKI 154


>gi|119476275|ref|ZP_01616626.1| DNA ligase [marine gamma proteobacterium HTCC2143]
 gi|119450139|gb|EAW31374.1| DNA ligase [marine gamma proteobacterium HTCC2143]
          Length = 781

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I+ IGP     +   FGT+  +  +S + LA +E +S K A  ++++F 
Sbjct: 622 NISNIGPTSAARVAAHFGTMAALMAASIDDLAMVEKLSVKAASGLFDYFQ 671



 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    ++L + FG+++ I  + PE L  +  I +++A +I   F  N
Sbjct: 531 GIPDVGEETAKVLARVFGSLERIRVAKPELLIQLPDIGREVAGEITEFFADN 582


>gi|116626792|ref|YP_828948.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122251346|sp|Q01NV7|DNLJ_SOLUE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116229954|gb|ABJ88663.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 662

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G      L Q+FG++  I R++ + L   E +  K+A  + 
Sbjct: 495 KSRRNSLPRVLTALGIRFVGERTAVFLAQAFGSMDAIERATVDELQQAEEVGPKVAEAVV 554

Query: 605 NHF 607
             F
Sbjct: 555 QFF 557


>gi|260912664|ref|ZP_05919150.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260633042|gb|EEX51207.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 673

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA  + L        I  +G      L   F T+  +  ++ E L  ++ + + +A +I+
Sbjct: 504 KAKKTTLARFIFALGIREVGEATALNLANYFKTLTALKEATLEQLQQVQDVGEVVANRIF 563

Query: 605 NHFHK 609
             + +
Sbjct: 564 VFWRE 568


>gi|258648381|ref|ZP_05735850.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259]
 gi|260851551|gb|EEX71420.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259]
          Length = 677

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  +P D       I  +G +  + L   F ++  +  ++ E L  +EG+ + IA  + 
Sbjct: 504 KSKSTPFDRVLYALGIRFVGKVVAKTLAAYFHSMDALQAATLEELLQVEGVGQTIAENVR 563

Query: 605 NHF 607
             F
Sbjct: 564 QWF 566


>gi|238790828|ref|ZP_04634584.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
 gi|238721075|gb|EEQ12759.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
          Length = 670

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  +  +  E L S+  + + +A  + N   + 
Sbjct: 520 VGEATAANLAAHFRTLDNLRAADIEALKSVPDVGEVVAKHVLNFLSEE 567


>gi|323140467|ref|ZP_08075395.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
 gi|322415035|gb|EFY05826.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
          Length = 679

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 552 AAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  + LD+      I  +G    R+L   FG+++ + ++ PE LA I  I  KIA  +  
Sbjct: 512 SKKNELDKLLFALGIRHVGAKVARILATEFGSMEKLQQAQPEELAQIRDIGDKIAESVVT 571

Query: 606 HFH 608
             +
Sbjct: 572 WLN 574


>gi|312194886|ref|YP_004014947.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c]
 gi|311226222|gb|ADP79077.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c]
          Length = 755

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L +   +   I  +S E LA ++G+   IA  +   F
Sbjct: 567 SIRHVGPSAAQALARELRSTDAIRAASLEELAVVDGVGPTIAAAVVEWF 615


>gi|237807406|ref|YP_002891846.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187]
 gi|237499667|gb|ACQ92260.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187]
          Length = 686

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           IG    + L Q F  +  +  +S ETL  +  + + +A  IY  F + 
Sbjct: 521 IGETTAQTLAQHFSDLPALQDASVETLLKVSDVGEVMAKHIYYFFRQE 568


>gi|256545196|ref|ZP_05472562.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170]
 gi|256399237|gb|EEU12848.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170]
          Length = 668

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    R L + + +   +  +  + L  IE I +K A  I + F+ +
Sbjct: 512 GIPNVGIKTARDLAEKYKSFDKLRETKQDDLIEIEDIGEKTAEDIVDFFNDS 563


>gi|172034914|ref|YP_001798708.1| hypothetical protein cce_5308 [Cyanothece sp. ATCC 51142]
 gi|171701678|gb|ACB54654.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 254

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKS-----YMHSNNHTHRI 48
           ++P  PG+Y +  +  ++LY+GKA NL+ R  S     Y   ++   RI
Sbjct: 58  KLPSQPGIYFVYTLDHQLLYIGKADNLRTRWNSHHKYQYFIESSMDSRI 106


>gi|1763756|gb|AAB54060.1| excision repair enzyme ERCC-1 [Mesocricetus auratus]
          Length = 127

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 80  QTLLATFGSLEQLLTASREDLALCPGLGPQKARRLFDVLHE 120


>gi|6576543|dbj|BAA88319.1| ERCC1 [Cricetulus griseus]
          Length = 293

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 246 QTLLATFGSLEQLLTASREDLALCPGLGPQKARRLFDVLHE 286


>gi|322382981|ref|ZP_08056811.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153004|gb|EFX45464.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 673

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           AI    K +++   S L    I   G    ++L + F ++  +  +  E L ++  +   
Sbjct: 498 AIE---KSKERDLSSFLFALGIPNTGKTTTKVLAEHFRSLDKVMDAVVEELIALPDVGGI 554

Query: 599 IACKIYNHFH 608
           +A  IY  F 
Sbjct: 555 VADSIYTFFR 564


>gi|166364069|ref|YP_001656342.1| DNA ligase [Microcystis aeruginosa NIES-843]
 gi|254781371|sp|B0JTW2|DNLJ_MICAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166086442|dbj|BAG01150.1| DNA ligase [Microcystis aeruginosa NIES-843]
          Length = 669

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G +  ++L +SF TV+ ++ +S   LASI GI ++IA  +Y+ F    +
Sbjct: 520 VGSVNAKILAESFRTVEELANASVTDLASIYGIGEEIAQSVYDWFRIEAN 569


>gi|80159718|ref|YP_398462.1| putative NAD-dependent DNA ligase [Clostridium phage c-st]
 gi|78675308|dbj|BAE47730.1| putative NAD-dependent DNA ligase [Clostridium phage c-st]
          Length = 649

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+ +  L+       I  +G    +LL++ F ++  I   + E + SI+GI   +  +IY
Sbjct: 482 KSKHCKLENFIFALGIQNVGLGTAKLLVKKFKSIDKIMNCNLEEIYSIDGIGDVVGNEIY 541

Query: 605 NHF 607
            +F
Sbjct: 542 KYF 544


>gi|269138493|ref|YP_003295193.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
 gi|267984153|gb|ACY83982.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
 gi|304558517|gb|ADM41181.1| DNA ligase [Edwardsiella tarda FL6-60]
          Length = 675

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FG+++ +  +  E+L  +  + + +A  I +   +
Sbjct: 521 VGEATAANLASHFGSLQALRAADLESLKRVPEVGEVVASHIVHFLSE 567


>gi|33151983|ref|NP_873336.1| NAD-dependent DNA ligase LigA [Haemophilus ducreyi 35000HP]
 gi|81423646|sp|Q7VMX7|DNLJ_HAEDU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33148205|gb|AAP95725.1| DNA ligase [Haemophilus ducreyi 35000HP]
          Length = 686

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G      L   FG+++ I  ++ E L  ++ + + +A ++ 
Sbjct: 515 KAKHTTLARFLFSLGIRDVGETTALNLANHFGSLENIRTANVEQLKEVQDVGEVVANRLV 574

Query: 605 NHFHK 609
             + +
Sbjct: 575 CFWQE 579


>gi|332992966|gb|AEF03021.1| DNA ligase [Alteromonas sp. SN2]
          Length = 326

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T++ I  +S + L  ++ +   +A  ++N F++
Sbjct: 175 VGEATAANLALHFETLEAIRNASEDELIEVQDVGGIVAAHLHNFFNE 221


>gi|295107089|emb|CBL04632.1| DNA ligase, NAD-dependent [Gordonibacter pamelaeae 7-10-1-b]
          Length = 731

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR-RKKAAYSPLDEINGIGPLRKRLL 571
           K GE + L         +          AI   R R   +A +     I  +G      L
Sbjct: 534 KDGEPIRLGST-VAKKLVA---------AIDGSRARPFSRALFG--LGIRHVG-KTIAEL 580

Query: 572 LQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L + + +++ +  +S E LA+++G+  KIA  +Y    
Sbjct: 581 LAAAYPSIEALMEASEEDLAALDGVGPKIARSVYLFLR 618


>gi|269303032|gb|ACZ33132.1| DNA ligase, NAD-dependent [Chlamydophila pneumoniae LPCoLN]
          Length = 662

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 21/78 (26%)

Query: 549 RKKAAYSPLDEIN-------------------GIGPLRKRLLLQSFGTVKMISRSSPETL 589
           R+++A + L+ I                    GIG      L   F T+  +  ++ E L
Sbjct: 484 RERSARNILESIEQAKHVDLDRFLVALGIPLIGIGVATV--LAGHFETLDRVISATFEEL 541

Query: 590 ASIEGISKKIACKIYNHF 607
            S+EG+ +K+A  I  +F
Sbjct: 542 LSLEGVGEKVAHAIAEYF 559


>gi|256852262|ref|ZP_05557648.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
 gi|260661706|ref|ZP_05862617.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
 gi|282934844|ref|ZP_06340077.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|297205571|ref|ZP_06922967.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
 gi|256615308|gb|EEU20499.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
 gi|260547453|gb|EEX23432.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
 gi|281301075|gb|EFA93386.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
 gi|297150149|gb|EFH30446.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
          Length = 669

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R+   +   + L  I+ +G     L++Q F  +  I ++S   L +I+ I + IA
Sbjct: 496 AIDNSRQNSVELLLNGL-GIDHVGAKAALLIVQRFKNLNKIMQASVSDLTAIDTIGETIA 554

Query: 601 CKIYNHF 607
             I  +F
Sbjct: 555 ESITTYF 561


>gi|22298400|ref|NP_681647.1| NAD-dependent DNA ligase LigA [Thermosynechococcus elongatus BP-1]
 gi|81743454|sp|Q8DKK2|DNLJ_THEEB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22294579|dbj|BAC08409.1| DNA ligase [Thermosynechococcus elongatus BP-1]
          Length = 689

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G +  +LL   F +V+ ++ ++   L  ++GI ++IA  +   F 
Sbjct: 533 GIRHVGSVNAQLLADRFKSVEELATATVADLCGVDGIGEEIAQAVQEWFQ 582


>gi|238926841|ref|ZP_04658601.1| exodeoxyribonuclease V alpha subunit [Selenomonas flueggei ATCC
           43531]
 gi|238885373|gb|EEQ49011.1| exodeoxyribonuclease V alpha subunit [Selenomonas flueggei ATCC
           43531]
          Length = 723

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I GIGP   R +++ FGT  +K+I   +P  L  + GI  K A KI   +H+
Sbjct: 102 IEGIGPATARRIVERFGTDTLKVIES-TPRRLTEVTGIGPKTAEKITASYHR 152


>gi|297582420|ref|YP_003698200.1| DNA integrity scanning, DisA, linker region [Bacillus
           selenitireducens MLS10]
 gi|297140877|gb|ADH97634.1| DNA integrity scanning, DisA, linker region [Bacillus
           selenitireducens MLS10]
          Length = 360

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +I  I P   R L++ FGT+  + R+  + L  +EGI +  A KI +  
Sbjct: 296 ILRKIPRIPPKVIRNLVRQFGTLSEMIRADIQELDEVEGIGEARANKIQDGL 347


>gi|195583504|ref|XP_002081557.1| GD11080 [Drosophila simulans]
 gi|194193566|gb|EDX07142.1| GD11080 [Drosophila simulans]
          Length = 259

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LL +FG +  I  +S E L+ + G+  + A K+Y    +
Sbjct: 201 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 254


>gi|195334481|ref|XP_002033906.1| GM21575 [Drosophila sechellia]
 gi|194125876|gb|EDW47919.1| GM21575 [Drosophila sechellia]
          Length = 259

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LL +FG +  I  +S E L+ + G+  + A K+Y    +
Sbjct: 201 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 254


>gi|115496970|ref|NP_001069853.1| DNA excision repair protein ERCC-1 [Bos taurus]
 gi|122145868|sp|Q1LZ75|ERCC1_BOVIN RecName: Full=DNA excision repair protein ERCC-1
 gi|94534838|gb|AAI16164.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence) [Bos taurus]
 gi|296477517|gb|DAA19632.1| DNA excision repair protein ERCC-1 [Bos taurus]
          Length = 294

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 26/41 (63%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E L+   G+  + A ++++ FH+
Sbjct: 247 QTLLTTFGSLEQLIAASREDLSLCPGLGPQKARRLFDVFHE 287


>gi|17137732|ref|NP_477468.1| Ercc1 [Drosophila melanogaster]
 gi|5020078|gb|AAD38010.1|AF146797_1 nucleotide excision repair protein ERCC1 [Drosophila melanogaster]
 gi|7303131|gb|AAF58196.1| Ercc1 [Drosophila melanogaster]
          Length = 259

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LL +FG +  I  +S E L+ + G+  + A K+Y    +
Sbjct: 201 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 254


>gi|283778858|ref|YP_003369613.1| DNA protecting protein DprA [Pirellula staleyi DSM 6068]
 gi|283437311|gb|ADB15753.1| DNA protecting protein DprA [Pirellula staleyi DSM 6068]
          Length = 401

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L  ++G+GP  +  L+  FG+ + +  +S   L  + G+  K+  +I
Sbjct: 21  RLAMLDGVGPRTRFNLVDRFGSAQEVFTASQHELRMVTGVGPKVVQQI 68


>gi|311032954|ref|ZP_07711044.1| GIY-YIG catalytic domain protein [Bacillus sp. m3-13]
          Length = 124

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G+Y   +I   +L+VGKA  L++RIK +   N    +      ++  I   +    +E  
Sbjct: 45  GIYMFFNINEDLLFVGKARKLRQRIKKHFEDNVSPIKNHR--DEVYRIDVCIVEDPMERE 102

Query: 71  LLEANMI-KRLKPRFNI 86
           + E   I   L+ ++N+
Sbjct: 103 IYE-TYIANTLQAKYNV 118


>gi|116513594|ref|YP_812500.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275636|sp|Q04BW0|DNLJ_LACDB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116092909|gb|ABJ58062.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 671

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           RK +    L    I+ +G    +L+ + F  +  I+ +S + L +I+ I   IA  +  +
Sbjct: 500 RKNSVELVLFGLGIDNVGGKAAQLIARKFKNMSKIASASVQELTAIDTIGMTIAESLTTY 559

Query: 607 FHKNTS 612
           F +  +
Sbjct: 560 FQQEEA 565


>gi|222445132|ref|ZP_03607647.1| hypothetical protein METSMIALI_00751 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434697|gb|EEE41862.1| hypothetical protein METSMIALI_00751 [Methanobrevibacter smithii
           DSM 2375]
          Length = 693

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           +G  R RLL+++FG    +S +S + L  +EGI  K+A K+ 
Sbjct: 648 LGRKRARLLMKTFG--DNLSEASEKELQKVEGIGSKLAGKVK 687


>gi|283457254|ref|YP_003361824.1| putative nucleic-acid-binding protein [Rothia mucilaginosa DY-18]
 gi|283133239|dbj|BAI64004.1| predicted nucleic-acid-binding protein [Rothia mucilaginosa DY-18]
          Length = 358

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  I  I       L++ FG+++ +  +S E L +++G+ +  A  +    
Sbjct: 296 LAGIPSIPNAISERLVERFGSLQALMAASLEDLRAVDGVGEARARTVREQL 346


>gi|255326108|ref|ZP_05367195.1| DNA-binding protein [Rothia mucilaginosa ATCC 25296]
 gi|255296819|gb|EET76149.1| DNA-binding protein [Rothia mucilaginosa ATCC 25296]
          Length = 358

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  I  I       L++ FG+++ +  +S E L +++G+ +  A  +    
Sbjct: 296 LAGIPSIPNAISERLVERFGSLQALMAASLEDLRAVDGVGEARARTVREQL 346


>gi|238756322|ref|ZP_04617636.1| DNA ligase [Yersinia ruckeri ATCC 29473]
 gi|238705475|gb|EEP97878.1| DNA ligase [Yersinia ruckeri ATCC 29473]
          Length = 674

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 21/52 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   F T++ +  +  E L ++  + + +A  + N   +  +  
Sbjct: 520 VGEATAAHLAAHFRTLENLRAADVEALKAVPDVGEVVAKHVLNFLSEEHNQQ 571


>gi|152974127|ref|YP_001373644.1| NAD-dependent DNA ligase LigA [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|190359228|sp|A7GKJ1|DNLJ_BACCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152022879|gb|ABS20649.1| DNA ligase, NAD-dependent [Bacillus cytotoxicus NVH 391-98]
          Length = 669

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R L + F T+  + ++  E L +I  I +K+A  I  +F    
Sbjct: 512 GIRHVGAKAARTLAEHFETMDNLVKAGEEELKAINEIGEKMAQSIVTYFDNED 564


>gi|325684644|gb|EGD26799.1| NAD-dependent DNA ligase LigA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 671

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           RK +    L    I+ +G    +L+ Q F  +  I+ +S + L +I+ I   IA  +  +
Sbjct: 500 RKNSVELVLFGLGIDNVGGKAAQLIAQKFKNMSKIASASVQELTAIDTIGMTIAESLTAY 559

Query: 607 FHKNTS 612
           F +  +
Sbjct: 560 FQQEEA 565


>gi|94263030|ref|ZP_01286849.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
 gi|93456573|gb|EAT06681.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
          Length = 678

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            RR++     L     I  IG +  +LL + FGT++ +  +  E    IEGI  + A  +
Sbjct: 510 NRRRRVELGRLLAALGIRHIGEVTAQLLARRFGTLEGLLAAGEEDFLDIEGIGPQAAAAL 569

Query: 604 YNHF 607
             +F
Sbjct: 570 VTYF 573


>gi|294815250|ref|ZP_06773893.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|326443605|ref|ZP_08218339.1| NAD-dependent DNA ligase LigA [Streptomyces clavuligerus ATCC
           27064]
 gi|294327849|gb|EFG09492.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 767

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP+    L + F +V+ I  ++ E LA+ EG+   IA  +   F + 
Sbjct: 596 SIRHVGPVAAEALAREFRSVQRIQEATEEELAATEGVGAIIAASLKQWFAEE 647


>gi|255542562|ref|XP_002512344.1| excision repair cross-complementing 1 ercc1, putative [Ricinus
           communis]
 gi|223548305|gb|EEF49796.1| excision repair cross-complementing 1 ercc1, putative [Ricinus
           communis]
          Length = 392

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I  +S E LA   GI ++   ++Y+ FH+
Sbjct: 259 FGSLSNIMDASMEDLARCPGIGERKVKRLYDTFHE 293


>gi|254390812|ref|ZP_05006024.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|197704511|gb|EDY50323.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 730

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP+    L + F +V+ I  ++ E LA+ EG+   IA  +   F + 
Sbjct: 559 SIRHVGPVAAEALAREFRSVQRIQEATEEELAATEGVGAIIAASLKQWFAEE 610


>gi|213964541|ref|ZP_03392741.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46]
 gi|213952734|gb|EEB64116.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46]
          Length = 703

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L Q FG+++ +  +S E +++I+GI + I   + + F
Sbjct: 548 SIRHVGPTVARTLAQKFGSMEALRAASREEISAIDGIGEIIGDSVADWF 596


>gi|220935192|ref|YP_002514091.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
 gi|254781444|sp|B8GTL0|DNLJ_THISH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219996502|gb|ACL73104.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 675

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+ ++ L        I  +G    R L   FG +  +  +  E L  +  +   +A  + 
Sbjct: 506 KSKHTQLARFIFALGIREVGEATARALAIHFGGLDALMAADEEALMQVPDVGPVVAHHVA 565

Query: 605 NHFHK 609
             F +
Sbjct: 566 TFFQQ 570


>gi|46143448|ref|ZP_00135242.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208768|ref|YP_001053993.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae L20]
 gi|166215385|sp|A3N1V2|DNLJ_ACTP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126097560|gb|ABN74388.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 683

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 22/47 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   F  +  I  ++ E L +++ + + +A +I   + +
Sbjct: 533 VGEATAQNLANHFHNLAAIRTATFEQLQAVQDVGEVVANRIVRFWQE 579


>gi|218260659|ref|ZP_03475861.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224427|gb|EEC97077.1| hypothetical protein PRABACTJOHN_01525 [Parabacteroides johnsonii
           DSM 18315]
          Length = 606

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L+ +F ++  + ++S E L +++ I ++IA  I  +F
Sbjct: 455 VGETVAKRLVAAFHSMDQLEQASFEDLIAVDEIGERIARSIIAYF 499


>gi|16768600|gb|AAL28519.1| GM10122p [Drosophila melanogaster]
          Length = 244

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LL +FG +  I  +S E L+ + G+  + A K+Y    +
Sbjct: 186 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 239


>gi|21226559|ref|NP_632481.1| DNA repair and recombination protein RadA [Methanosarcina mazei
           Go1]
 gi|20904832|gb|AAM30153.1| recombination/repair protein RadA [Methanosarcina mazei Go1]
          Length = 367

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            L+E+ G+GP     L ++ F T++ ++ +SP  LA+   I +  A KI N   +   
Sbjct: 47  ALEELPGVGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAAD 104


>gi|34395788|sp|Q8PZN5|RADA_METMA RecName: Full=DNA repair and recombination protein radA
          Length = 325

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            L+E+ G+GP     L ++ F T++ ++ +SP  LA+   I +  A KI N   +   
Sbjct: 5   ALEELPGVGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAAD 62


>gi|328954307|ref|YP_004371641.1| DNA protecting protein DprA [Desulfobacca acetoxidans DSM 11109]
 gi|328454631|gb|AEB10460.1| DNA protecting protein DprA [Desulfobacca acetoxidans DSM 11109]
          Length = 366

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L  I G+G +    LL+ F +  ++ ++  E L  ++G+S  IA  I + 
Sbjct: 12  ALRSIPGLGVVIFHRLLKRFTSPDLVFQAPYEELIQVKGVSPAIAQAICDF 62


>gi|308071479|ref|YP_003873084.1| hypothetical protein PPE_04787 [Paenibacillus polymyxa E681]
 gi|305860758|gb|ADM72546.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 118

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G++   +    +L+VGKA  L+ RIK +   N    +     +++  I   +    V
Sbjct: 36  DKAGIFMFYNAQEELLFVGKARKLRPRIKKHFEDNVSPIKDKR--NEVAIIEVCIVEDAV 93

Query: 68  EALLLEANMIKRLKPRFNI 86
           E  + E  +I   K ++N+
Sbjct: 94  EREIYETYIINTQKAKYNV 112


>gi|295702476|ref|YP_003595551.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
 gi|294800135|gb|ADF37201.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
          Length = 668

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L Q F T+  +++++ + L +I  I  K+A  I  +F +  
Sbjct: 511 GIRHVGAKAAKTLAQHFETIDKLTKATYDELVAINEIGAKMADAIVAYFTQEE 563


>gi|86142854|ref|ZP_01061293.1| DNA ligase [Leeuwenhoekiella blandensis MED217]
 gi|85830886|gb|EAQ49344.1| DNA ligase [Leeuwenhoekiella blandensis MED217]
          Length = 663

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G    R L + F T+  ++ +S ETL +++ I  +IA  + + F +  + 
Sbjct: 514 VGETVARKLAKQFKTIDALAEASEETLVAVDEIGARIAQSVVSFFSEEANQ 564


>gi|239815926|ref|YP_002944836.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
 gi|239802503|gb|ACS19570.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
          Length = 694

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    + L + FG +  I  +S E L  +  +   +A  +   F
Sbjct: 537 GIRHVGESTAKDLSKHFGKLDAIMDASEEQLLEVNDVGPVVAQSLRTFF 585


>gi|149722206|ref|XP_001502644.1| PREDICTED: similar to DNA excision repair protein ERCC-1 [Equus
           caballus]
          Length = 291

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 244 QTLLATFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 284


>gi|108800777|ref|YP_640974.1| excinuclease ABC subunit C [Mycobacterium sp. MCS]
 gi|119869916|ref|YP_939868.1| excinuclease ABC subunit C [Mycobacterium sp. KMS]
 gi|119870333|ref|YP_940285.1| excinuclease ABC subunit C [Mycobacterium sp. KMS]
 gi|108771196|gb|ABG09918.1| Excinuclease ABC, C subunit-like protein [Mycobacterium sp. MCS]
 gi|119696005|gb|ABL93078.1| Excinuclease ABC, C subunit domain protein [Mycobacterium sp. KMS]
 gi|119696422|gb|ABL93495.1| Excinuclease ABC, C subunit domain protein [Mycobacterium sp. KMS]
          Length = 180

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 12  VYQMLDIA-GRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           VY +        LYVG++ N+  R+       +   +     + +  ++     TE  A 
Sbjct: 96  VYLLWGEDPNTPLYVGQSTNILSRL-----GAHMGDKTKR--ALVKRVQLIRCSTEKLAD 148

Query: 71  LLEANMIKRLKPRFNI 86
             E  +I+  +P  N+
Sbjct: 149 T-EWRLIQHYQPPLNV 163


>gi|73669826|ref|YP_305841.1| DNA repair and recombination protein RadA [Methanosarcina barkeri
           str. Fusaro]
 gi|121695787|sp|Q46A31|RADA_METBF RecName: Full=DNA repair and recombination protein radA
 gi|72396988|gb|AAZ71261.1| DNA repair protein [Methanosarcina barkeri str. Fusaro]
          Length = 325

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L+E+ G+GP     L ++ F T++ ++ +SP  LA+   I +  A KI N   +   
Sbjct: 6   LEELPGVGPATAEKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAAD 62


>gi|242399963|ref|YP_002995388.1| DNA repair and recombination protein radA [Thermococcus sibiricus
           MM 739]
 gi|242266357|gb|ACS91039.1| DNA repair and recombination protein radA [Thermococcus sibiricus
           MM 739]
          Length = 526

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           KK   S  +++ G+GP     L ++ + +++ I+ +SP  L  + G+S+  A KI     
Sbjct: 40  KKEIKSI-EDLPGVGPATAEKLREAGYDSLEAIAVASPLELKELAGVSEGAALKIIQAAR 98

Query: 609 KNTS 612
           +  +
Sbjct: 99  EAAN 102


>gi|57234651|ref|YP_181315.1| RadC family DNA repair protein [Dehalococcoides ethenogenes 195]
 gi|57225099|gb|AAW40156.1| DNA repair protein, RadC family [Dehalococcoides ethenogenes 195]
          Length = 222

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL  FG    I+ +S E L  ++GI    AC++   F
Sbjct: 46  QRLLTHFGGPSGIASASVEELLKLKGIGLAKACQLKAAF 84


>gi|226533697|ref|NP_001152781.1| DNA excision repair protein ERCC-1 [Sus scrofa]
 gi|226354716|gb|ACO50967.1| excision repair cross-complementing rodent repair deficiency
           complementation group 1 [Sus scrofa]
          Length = 294

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 26/41 (63%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ ++ +S E LA   G+  + A ++++  H+
Sbjct: 247 QTLLTTFGSLEQLTAASREDLALCPGLGPQKARRLFDVLHE 287


>gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
 gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
          Length = 679

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+G    R+L  +F T+  + ++  E L     +    A  I + F 
Sbjct: 522 GIRGVGETTARMLANTFQTLDALRQADLEALKKTPDVGDITAEWILDFFQ 571


>gi|119961355|ref|YP_947208.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
 gi|166215391|sp|A1R4P6|DNLJ_ARTAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119948214|gb|ABM07125.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
          Length = 768

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L  +FG++  I  ++ E +A ++G+   IA  +   F
Sbjct: 587 SIRHVGPTASRALATAFGSMDAIRNATEEQMAHVDGVGPTIAVALKEWF 635


>gi|329924646|ref|ZP_08279661.1| GIY-YIG catalytic domain protein [Paenibacillus sp. HGF5]
 gi|328940480|gb|EGG36802.1| GIY-YIG catalytic domain protein [Paenibacillus sp. HGF5]
          Length = 118

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +  G +L+VGKA  L+ RIK +   +    +     +++ +I   V    V   
Sbjct: 39  GIFMFYNSKGELLFVGKARKLRPRIKKHFEDSVSPIKEHR--NEVASIEVCVIEDAVHRE 96

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 97  IYETYIINEFKAKYNV 112


>gi|295695947|ref|YP_003589185.1| hypothetical protein Btus_1318 [Bacillus tusciae DSM 2912]
 gi|295411549|gb|ADG06041.1| conserved hypothetical protein [Bacillus tusciae DSM 2912]
          Length = 401

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEG 594
           PL  I G+GP R+  LL++FG+ + ++ R+S E LA + G
Sbjct: 332 PLSFIPGLGPKRRSALLKAFGSEMGVLHRASREALAEVVG 371


>gi|242033937|ref|XP_002464363.1| hypothetical protein SORBIDRAFT_01g016980 [Sorghum bicolor]
 gi|241918217|gb|EER91361.1| hypothetical protein SORBIDRAFT_01g016980 [Sorghum bicolor]
          Length = 397

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I  +S E LA   GI ++   ++Y+ FH+
Sbjct: 270 FGSLSQIMNASMEELARCPGIGERKVKRLYDTFHE 304


>gi|218295448|ref|ZP_03496261.1| PHP domain protein [Thermus aquaticus Y51MC23]
 gi|218244080|gb|EED10606.1| PHP domain protein [Thermus aquaticus Y51MC23]
          Length = 575

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 545 HRKRRKKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRSSPE--TLASIEGISKK 598
           H +   K     L+  E+ G+GP   R L ++ G  +++ +  +  E   L  ++G   K
Sbjct: 81  HEELSGKVPRGVLEVMEVPGVGPKTARGLYEALGIDSLEKLKEA-LERGDLLRLKGFGAK 139

Query: 599 IACKIYNHF 607
            A +I    
Sbjct: 140 KAERIKEGL 148


>gi|195486112|ref|XP_002091366.1| GE13614 [Drosophila yakuba]
 gi|194177467|gb|EDW91078.1| GE13614 [Drosophila yakuba]
          Length = 259

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LL +FG +  I  +S E L+ + G+  + A K+Y    +
Sbjct: 201 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 254


>gi|109898096|ref|YP_661351.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c]
 gi|122972028|sp|Q15UZ1|DNLJ_PSEA6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|109700377|gb|ABG40297.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c]
          Length = 677

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L Q F T++ I ++  + L ++  +   +A  ++
Sbjct: 507 KSKKTTLAKFLYSLGIREVGEATAQNLAQHFLTLEAIEQADLDALQAVSDVGVIVAQHVF 566

Query: 605 NHFHKN 610
           N F + 
Sbjct: 567 NFFKEE 572


>gi|323490410|ref|ZP_08095622.1| DNA ligase [Planococcus donghaensis MPA1U2]
 gi|323395909|gb|EGA88743.1| DNA ligase [Planococcus donghaensis MPA1U2]
          Length = 668

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R  +    L    I  +G    R+L + FGT++ +  ++ E L  +  I  K+A  I  +
Sbjct: 500 RSNSMEKLLFGLGIRHVGERGARILSEHFGTLEQLIAATKEELIEVHEIGDKMADSIVMY 559

Query: 607 FHKNT 611
           F    
Sbjct: 560 FDNEE 564


>gi|300933643|ref|ZP_07148899.1| NAD-dependent DNA ligase LigA [Corynebacterium resistens DSM 45100]
          Length = 680

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKN 610
           GP   + L   + ++  I  +S E +++IEG+ + IA  I + F    H+N
Sbjct: 524 GPTAAKALAAHYHSIAAIQGASVEEMSTIEGVGEIIAQSIADWFTVDWHRN 574


>gi|295101804|emb|CBK99349.1| DNA repair protein radc [Faecalibacterium prausnitzii L2-6]
          Length = 244

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
            LL+ FG+   +  +S E L  + G+    A  ++
Sbjct: 52  ALLERFGSFAGVLEASEEELCRVPGVGPASARMLH 86


>gi|227499502|ref|ZP_03929609.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098]
 gi|227218381|gb|EEI83632.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098]
          Length = 666

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R L   F +   +  S  + L  I+ I +  A  I   F
Sbjct: 510 GIPNVGERTSRDLANKFKSFDKLRASKVDELTDIDDIGEITAENIVEFF 558


>gi|34809805|pdb|1PZN|A Chain A, Rad51 (Rada)
 gi|34809806|pdb|1PZN|B Chain B, Rad51 (Rada)
 gi|34809807|pdb|1PZN|C Chain C, Rad51 (Rada)
 gi|34809808|pdb|1PZN|D Chain D, Rad51 (Rada)
 gi|34809809|pdb|1PZN|E Chain E, Rad51 (Rada)
 gi|34809810|pdb|1PZN|F Chain F, Rad51 (Rada)
 gi|34809811|pdb|1PZN|G Chain G, Rad51 (Rada)
          Length = 349

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            ++++ G+GP     L ++ + T++ I+ +SP  L  + GIS+  A KI     K  +
Sbjct: 36  SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAAN 93


>gi|18978298|ref|NP_579655.1| DNA repair and recombination protein RadA [Pyrococcus furiosus DSM
           3638]
 gi|13878669|sp|O74036|RADA_PYRFU RecName: Full=DNA repair and recombination protein radA
 gi|3560537|gb|AAC34998.1| recombinase [Pyrococcus furiosus DSM 3638]
 gi|18894122|gb|AAL82050.1| recombinase, radA [Pyrococcus furiosus DSM 3638]
          Length = 349

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            ++++ G+GP     L ++ + T++ I+ +SP  L  + GIS+  A KI     K  +
Sbjct: 36  SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAAN 93


>gi|332257177|ref|XP_003277689.1| PREDICTED: DNA excision repair protein ERCC-1-like [Nomascus
           leucogenys]
          Length = 245

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 199 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 239


>gi|297705160|ref|XP_002829451.1| PREDICTED: DNA excision repair protein ERCC-1-like isoform 1 [Pongo
           abelii]
          Length = 297

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291


>gi|296234108|ref|XP_002762336.1| PREDICTED: DNA excision repair protein ERCC-1-like [Callithrix
           jacchus]
          Length = 262

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 215 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 255


>gi|297705162|ref|XP_002829452.1| PREDICTED: DNA excision repair protein ERCC-1-like isoform 2 [Pongo
           abelii]
 gi|193787266|dbj|BAG52472.1| unnamed protein product [Homo sapiens]
          Length = 225

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 179 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 219


>gi|194882957|ref|XP_001975576.1| GG20484 [Drosophila erecta]
 gi|190658763|gb|EDV55976.1| GG20484 [Drosophila erecta]
          Length = 259

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LL +FG +  I  +S E L+ + G+  + A K+Y    +
Sbjct: 201 ALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQE 254


>gi|189054601|dbj|BAG37398.1| unnamed protein product [Homo sapiens]
          Length = 297

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291


>gi|38112299|gb|AAR11239.1| excision repair protein [Pan troglodytes]
          Length = 251

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 208 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 248


>gi|61357240|gb|AAX41357.1| excision repair cross-complementing rodent repair deficiency
           complementation group 1 [synthetic construct]
          Length = 297

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291


>gi|60655939|gb|AAX32533.1| excision repair cross-complementing rodent repair deficiency
           complementation group 1 [synthetic construct]
          Length = 297

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291


>gi|54696472|gb|AAV38608.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence) [synthetic construct]
 gi|60652851|gb|AAX29120.1| excision repair cross-complementing rodent repair deficiency
           complementation group 1 [synthetic construct]
 gi|60830454|gb|AAX36930.1| excision repair cross-complementing rodent repair deficiency
           complementation group 1 [synthetic construct]
 gi|61365104|gb|AAX42654.1| excision repair cross-complementing rodent repair deficiency
           complementation group 1 [synthetic construct]
 gi|61367243|gb|AAX42971.1| excision repair cross-complementing rodent repair deficiency
           complementation group 1 [synthetic construct]
          Length = 298

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291


>gi|85544011|pdb|1Z00|A Chain A, Solution Structure Of The C-Terminal Domain Of Ercc1
           Complexed With The C-Terminal Domain Of Xpf
          Length = 89

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 33  QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73


>gi|73536055|pdb|2A1J|B Chain B, Crystal Structure Of The Complex Between The C-Terminal
           Domains Of Human Xpf And Ercc1
          Length = 91

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 46  QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 86


>gi|4503599|ref|NP_001974.1| DNA excision repair protein ERCC-1 isoform 2 [Homo sapiens]
 gi|302632548|ref|NP_001181860.1| DNA excision repair protein ERCC-1 [Pan troglodytes]
 gi|119538|sp|P07992|ERCC1_HUMAN RecName: Full=DNA excision repair protein ERCC-1
 gi|21105797|gb|AAM34796.1|AF512555_1 excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence) [Homo sapiens]
 gi|182174|gb|AAA52394.1| excision repair protein [Homo sapiens]
 gi|182177|gb|AAA35810.1| excision repair protein [Homo sapiens]
 gi|2583146|gb|AAC16253.1| excision repair protein [Homo sapiens]
 gi|14286266|gb|AAH08930.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence) [Homo sapiens]
 gi|54696474|gb|AAV38609.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence) [Homo sapiens]
 gi|60818953|gb|AAX36483.1| excision repair cross-complementing rodent repair deficiency
           complementation group 1 [synthetic construct]
 gi|61354943|gb|AAX41079.1| excision repair cross-complementing rodent repair deficiency
           complementation group 1 [synthetic construct]
 gi|61357235|gb|AAX41356.1| excision repair cross-complementing rodent repair deficiency
           complementation group 1 [synthetic construct]
 gi|61363050|gb|AAX42326.1| excision repair cross-complementing rodent repair deficiency
           complementation group 1 [synthetic construct]
 gi|119577752|gb|EAW57348.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence), isoform CRA_a [Homo sapiens]
 gi|119577754|gb|EAW57350.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence), isoform CRA_a [Homo sapiens]
 gi|123990970|gb|ABM83928.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence) [synthetic construct]
 gi|123999343|gb|ABM87247.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence) [synthetic construct]
 gi|225908|prf||1403276A DNA repair gene
          Length = 297

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 291


>gi|188533249|ref|YP_001907046.1| NAD-dependent DNA ligase LigA [Erwinia tasmaniensis Et1/99]
 gi|254781330|sp|B2VE40|DNLJ_ERWT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188028291|emb|CAO96149.1| DNA ligase [Erwinia tasmaniensis Et1/99]
          Length = 670

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ +G      L   FGT++ +  +  +TL ++  + K +A  + N   + ++
Sbjct: 514 GISEVGEATAANLAAHFGTLEALMAADIDTLITVPDVGKVVASHVRNFLDEESN 567


>gi|170781460|ref|YP_001709792.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|190359244|sp|B0RGA7|DNLJ_CLAMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169156028|emb|CAQ01163.1| DNA ligase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 847

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R L   FG++ +I  +S E LA+++G+   IA  + + F
Sbjct: 606 SIRHVGPVAARALAGWFGSLDVIRAASREELAAVDGVGGIIADALLDWF 654


>gi|90410985|ref|ZP_01218999.1| DNA ligase [Photobacterium profundum 3TCK]
 gi|90328198|gb|EAS44509.1| DNA ligase [Photobacterium profundum 3TCK]
          Length = 697

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T++ I+ +S E L  +  + + +A  + N F +
Sbjct: 547 VGEATAANLANHFETLEAITAASKEQLLVVPDVGEVVANNLLNFFRE 593


>gi|54308062|ref|YP_129082.1| NAD-dependent DNA ligase LigA [Photobacterium profundum SS9]
 gi|81615410|sp|Q6LTU5|DNLJ_PHOPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46912488|emb|CAG19280.1| putative NAD-dependent DNA ligase [Photobacterium profundum SS9]
          Length = 676

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T++ I+ +S E L  +  + + +A  + N F +
Sbjct: 526 VGEATAANLANHFETLEAITAASKEQLLVVPDVGEVVANNLLNFFRE 572


>gi|171184588|ref|YP_001793507.1| DEAD/DEAH box helicase domain-containing protein [Thermoproteus
           neutrophilus V24Sta]
 gi|170933800|gb|ACB39061.1| DEAD/DEAH box helicase domain protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 729

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 562 GIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           G+G +R R L   FG  TVK ++++S   +AS+ G  +++A  I  
Sbjct: 676 GVGRVRARALYN-FGYRTVKDLAKASVREIASLPGFGERLAESIIE 720


>gi|89075460|ref|ZP_01161871.1| DNA ligase [Photobacterium sp. SKA34]
 gi|89048732|gb|EAR54303.1| DNA ligase [Photobacterium sp. SKA34]
          Length = 670

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T++ IS+++ + L  +  +   +A  I+N F + 
Sbjct: 521 VGEATAANLANYFETLESISQATKDQLIEVPDVGGIVAAHIFNFFREE 568


>gi|317507336|ref|ZP_07965075.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
 gi|316254381|gb|EFV13712.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
          Length = 712

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG+V  +  +  E LA ++G+   IA  +   F
Sbjct: 535 SIRHVGPTAARALATRFGSVDAVFGADQEALAEVDGVGPTIAASVREWF 583


>gi|300173629|ref|YP_003772795.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
 gi|299888008|emb|CBL91976.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
          Length = 681

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    R+L   F  ++ I+ ++ E +A+I+GI  +IA  I  +F
Sbjct: 526 VGAKAARVLAGKFKNLQSIATATTEDIANIDGIGDRIARSIVQYF 570


>gi|254371060|ref|ZP_04987062.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151569300|gb|EDN34954.1| hypothetical protein FTBG_00816 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 643

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +    L   FG+++    +  E L  I  I + +A  I + +H +
Sbjct: 491 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 542


>gi|294635487|ref|ZP_06713972.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
 gi|291091145|gb|EFE23706.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
          Length = 675

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FG++  +  +  E+L S+  + + +A  I +   +
Sbjct: 521 VGEATAANLASHFGSLSALRGADLESLKSVPEVGEVVARHIRHFLSE 567


>gi|296331752|ref|ZP_06874219.1| putative excinuclease [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675858|ref|YP_003867530.1| putative excinuclease [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151077|gb|EFG91959.1| putative excinuclease [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305414102|gb|ADM39221.1| putative excinuclease [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 124

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +I   +L+VGKA  L++RIK +        +      ++  I   V    +E  
Sbjct: 45  GIFMFYNIHDELLFVGKARKLRQRIKKHFEDTVSPIKHHR--DEVYKIEVCVVEDPMERE 102

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I     ++N+
Sbjct: 103 IYETYIINTQHSKYNV 118


>gi|254383201|ref|ZP_04998554.1| DNA ligase [Streptomyces sp. Mg1]
 gi|194342099|gb|EDX23065.1| DNA ligase [Streptomyces sp. Mg1]
          Length = 736

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+    L + F +++ I +++ E LA+ +G+   IA  +   F
Sbjct: 563 SIRHVGPVAAEALAREFRSIERIEQATEEELAATDGVGAIIAASLKEWF 611


>gi|208779663|ref|ZP_03247008.1| DNA ligase, NAD-dependent [Francisella novicida FTG]
 gi|208744624|gb|EDZ90923.1| DNA ligase, NAD-dependent [Francisella novicida FTG]
          Length = 678

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +    L   FG+++    +  E L  I  I + +A  I + +H +
Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577


>gi|255660255|ref|ZP_05405664.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
          Length = 658

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G +  + L   F  +K +  +S E L S+  +   +A  +YN FH
Sbjct: 507 GIKHVGNVLAKNLANHFKNIKALQHASLENLISLNDVGITVAESLYNWFH 556


>gi|251795535|ref|YP_003010266.1| excinuclease ABC subunit C [Paenibacillus sp. JDR-2]
 gi|247543161|gb|ACT00180.1| Excinuclease ABC C subunit domain protein [Paenibacillus sp. JDR-2]
          Length = 118

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G +   +  G VL+VGKA  L+ RIK +   +    +      ++  I   V    VE  
Sbjct: 39  GFFIFYNFKGDVLFVGKARKLRPRIKKHFEDSVSPMKNYR--DEVTKIEIYVNEDAVERE 96

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I + + ++N+
Sbjct: 97  IYETYLINQFRAKYNV 112


>gi|12045108|ref|NP_072919.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
 gi|1352291|sp|P47496|DNLJ_MYCGE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|3844852|gb|AAC71474.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
 gi|166078824|gb|ABY79442.1| DNA ligase, NAD-dependent [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 659

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G +  + L   F  +K +  +S E L S+  +   +A  +YN FH
Sbjct: 508 GIKHVGNVLAKNLANHFKNIKALQHASLENLISLNDVGITVAESLYNWFH 557


>gi|220906114|ref|YP_002481425.1| NAD-dependent DNA ligase LigA [Cyanothece sp. PCC 7425]
 gi|254781305|sp|B8HV17|DNLJ_CYAP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219862725|gb|ACL43064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7425]
          Length = 738

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G +  ++L  +F +V+ +  +S E + ++ GI  +IA  I   F    +H+
Sbjct: 581 GIRHVGSVNAQVLTTAFPSVERLMAASAEDIEAVHGIGPEIAQSIVQWFQTPANHS 636



 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 559 EINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +I+G+G    R L+   G   +V  + R +   L ++E +  K+A K+     K+ S  
Sbjct: 515 DIDGVGEKLVRQLVDR-GLVNSVADLYRLTVAQLLTLERMGNKLAEKVVAAIAKSQSRP 572


>gi|322389144|ref|ZP_08062706.1| competence protein CelA [Streptococcus parasanguinis ATCC 903]
 gi|321144154|gb|EFX39570.1| competence protein CelA [Streptococcus parasanguinis ATCC 903]
          Length = 222

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           +A  S L  ++GIG  R + ++           +     S + L ++ GI +K   K+ +
Sbjct: 165 RATESELQTVSGIGQKRAQDIIAY-------REANGPFRSVDDLKNVSGIGEKTLEKLRD 217

Query: 606 HF 607
            F
Sbjct: 218 AF 219


>gi|305663906|ref|YP_003860194.1| ERCC4 domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378475|gb|ADM28314.1| ERCC4 domain protein [Ignisphaera aggregans DSM 17230]
          Length = 239

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             IGP     +L+  G++     +S   L  IEG+ +K A +IY   H
Sbjct: 163 PNIGPKIALRILEELGSIHRFCNASLSELMRIEGLGEKKASEIYQIIH 210


>gi|258645494|ref|ZP_05732963.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
 gi|260402847|gb|EEW96394.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
          Length = 669

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
             F T+  I  +  ET+   EGI K  A  +Y++FH   +
Sbjct: 527 HYFHTIDAIMAADVETIEETEGIGKITAKSLYDYFHDEKN 566


>gi|229003296|ref|ZP_04161126.1| DNA ligase [Bacillus mycoides Rock1-4]
 gi|228757914|gb|EEM07129.1| DNA ligase [Bacillus mycoides Rock1-4]
          Length = 669

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R L + F T+  + +++ E L  I  I +K+A  I  +F    
Sbjct: 512 GIRHVGAKAARTLAEHFETMDHLVKATEEELKEINEIGEKMAQSIVTYFDNED 564


>gi|226941791|ref|YP_002796865.1| DnlJ [Laribacter hongkongensis HLHK9]
 gi|254781355|sp|C1D4R5|DNLJ_LARHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226716718|gb|ACO75856.1| DnlJ [Laribacter hongkongensis HLHK9]
          Length = 692

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R L + FGT+  +  +  + L +   +   +A  I + F +
Sbjct: 536 GIRNVGEATARDLARHFGTLDALMAADQDMLMTAPDVGPIVARSIVDFFAE 586


>gi|295401729|ref|ZP_06811695.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294976216|gb|EFG51828.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 670

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    ++L + F T+  +  ++ E L +I  I +K+A  I  +F K
Sbjct: 511 GIRHVGAKAAKVLAEHFETMDRLQNATKEELMAIHEIGEKMADSIVTYFAK 561


>gi|312112463|ref|YP_003990779.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
 gi|311217564|gb|ADP76168.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
          Length = 670

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    ++L + F T+  +  ++ E L +I  I +K+A  I  +F K
Sbjct: 511 GIRHVGAKAAKVLAEHFETMDRLQNATKEELMAIHEIGEKMADSIVTYFAK 561


>gi|228989472|ref|ZP_04149457.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
 gi|228770197|gb|EEM18776.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
          Length = 669

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R L + F T+  + +++ E L  I  I +K+A  I  +F    
Sbjct: 512 GIRHVGAKAARTLAEHFETMDHLVKATEEELKEINEIGEKMAQSIVTYFDNED 564


>gi|228995667|ref|ZP_04155330.1| DNA ligase [Bacillus mycoides Rock3-17]
 gi|228764044|gb|EEM12928.1| DNA ligase [Bacillus mycoides Rock3-17]
          Length = 669

 Score = 50.5 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R L + F T+  + +++ E L  I  I +K+A  I  +F    
Sbjct: 512 GIRHVGAKAARTLAEHFETMDHLVKATEEELKEINEIGEKMAQSIVTYFDNED 564


>gi|56708436|ref|YP_170332.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670907|ref|YP_667464.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198]
 gi|134301572|ref|YP_001121540.1| DNA ligase [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931418|ref|YP_001891402.1| DNA ligase, NAD-dependent [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457588|ref|ZP_03666061.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254875281|ref|ZP_05247991.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|81597232|sp|Q5NF60|DNLJ_FRATT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123063401|sp|Q14GL3|DNLJ_FRAT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215759|sp|A4IWW8|DNLJ_FRATW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781335|sp|B2SFT1|DNLJ_FRATM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56604928|emb|CAG46020.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321240|emb|CAL09403.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198]
 gi|134049349|gb|ABO46420.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|187712327|gb|ACD30624.1| DNA ligase, NAD-dependent [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841280|gb|EET19716.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159628|gb|ADA79019.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 678

 Score = 50.5 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +    L   FG+++    +  E L  I  I + +A  I + +H +
Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577


>gi|254368889|ref|ZP_04984902.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022]
 gi|157121810|gb|EDO65980.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022]
          Length = 678

 Score = 50.5 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +    L   FG+++    +  E L  I  I + +A  I + +H +
Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577


>gi|295688455|ref|YP_003592148.1| DNA repair protein RadC [Caulobacter segnis ATCC 21756]
 gi|295430358|gb|ADG09530.1| DNA repair protein RadC [Caulobacter segnis ATCC 21756]
          Length = 256

 Score = 50.5 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           + LL  FG+   +  ++ E LA++ G+ +  A  +    H+ T
Sbjct: 80  KALLNRFGSFGGVLGATIEELATVPGVGETAAMDLKL-LHEAT 121


>gi|76798177|ref|ZP_00780429.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
 gi|77405561|ref|ZP_00782652.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
 gi|77410701|ref|ZP_00787060.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
 gi|76586485|gb|EAO62991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
 gi|77163237|gb|EAO74189.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
 gi|77175868|gb|EAO78646.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
          Length = 648

 Score = 50.5 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    RLLL+ FG ++ +S++S E++ASI+G+   IA  ++  F K  
Sbjct: 498 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 550


>gi|303242964|ref|ZP_07329421.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302589483|gb|EFL59274.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 391

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PL+ I  +GP     L+  FG+ +K++  +S + L+ +  ++ +IA  I
Sbjct: 322 PLEFIPKVGPKTIDKLVNHFGSEMKVLHDASYDDLSKV--VNDEIAKNI 368


>gi|38639919|ref|NP_943730.1| COX1-I7 [Penicillium marneffei]
 gi|33860273|gb|AAQ54931.1| COX1-I7 [Penicillium marneffei]
          Length = 273

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKS--YMHSNNHTHR---ITHMIS-QINNI--- 58
           +  GVY  ++     LY+G + NL KR+ S  Y  +++   +   I  M    + N    
Sbjct: 50  KKSGVYVFINNINNQLYIGSSINLTKRMVSYYYYTNSDKLSKSVIIRAMKKYNLENFSLG 109

Query: 59  --RFTVTCTE-VEALLLEANMIKRLKPRFNIL 87
              F     E    L LE   I   KP++N+L
Sbjct: 110 ILEF--CKQEPKICLNLEQKWIDFYKPKYNVL 139


>gi|301063517|ref|ZP_07204049.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
 gi|300442456|gb|EFK06689.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
          Length = 671

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G     LL + FG ++ +S +  E L++I+G+  +IA  ++N+F
Sbjct: 519 GIRHVGEFTAALLSERFGNIESLSNAGLEALSAIDGVGPQIAESVFNYF 567


>gi|150388772|ref|YP_001318821.1| NAD-dependent DNA ligase LigA [Alkaliphilus metalliredigens QYMF]
 gi|190359225|sp|A6TLU4|DNLJ_ALKMQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149948634|gb|ABR47162.1| DNA ligase, NAD-dependent [Alkaliphilus metalliredigens QYMF]
          Length = 660

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      L   FG ++ I R++ + L  +  I   +A  I   F
Sbjct: 503 GIPNVGRKTAADLANYFGDLEKIQRANYDELVVLPDIGGIVAQSIVGFF 551


>gi|237737305|ref|ZP_04567786.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229421167|gb|EEO36214.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 220

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 14/82 (17%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G+Y + D    ++Y+GK+ NL +RI S       + +          +++ +T T  +  
Sbjct: 127 GLYFLYDQDKNLIYIGKSRNLNERIPS-------SVKERK----AYYLKYKLTKTLTDTH 175

Query: 71  LLEANMIKRLKPRFNILLRDDK 92
           +LE   I +LKP  N   +D K
Sbjct: 176 ILELYYIAKLKPILN---KDSK 194


>gi|256390514|ref|YP_003112078.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928]
 gi|256356740|gb|ACU70237.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928]
          Length = 723

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R+L + F +   ++ ++ E L +  GI   IA  I   F
Sbjct: 557 SIRHVGPTAARVLAREFPSFDALANATEEDLKAANGIGPTIATAIVEWF 605


>gi|256822391|ref|YP_003146354.1| NAD-dependent DNA ligase [Kangiella koreensis DSM 16069]
 gi|256795930|gb|ACV26586.1| DNA ligase, NAD-dependent [Kangiella koreensis DSM 16069]
          Length = 667

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G +  + +   F T+  I ++S E L S+  +   +A  I   F
Sbjct: 521 VGEVTAKNIAHHFLTLDGIIKASQEELESVPDVGPIVAHHIRAFF 565


>gi|77409440|ref|ZP_00786135.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
 gi|77171952|gb|EAO75126.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
          Length = 643

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    RLLL+ FG ++ +S++S E++ASI+G+   IA  ++  F K  
Sbjct: 493 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 545



 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQ-SF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I G GP     L        V  I R S E L +++GI +K A KIY+    +  ++
Sbjct: 427 NITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSATKIYHAIQSSKENS 484


>gi|91216156|ref|ZP_01253124.1| Smf protein DNA processing chain A [Psychroflexus torquis ATCC
           700755]
 gi|91185673|gb|EAS72048.1| Smf protein DNA processing chain A [Psychroflexus torquis ATCC
           700755]
          Length = 366

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           GIG +  + LLQ FG+   + ++S   L  ++GI  K    + +
Sbjct: 17  GIGHINAKKLLQYFGSATALFQASANDLKEVDGIGSKRIKTLRD 60


>gi|76787534|ref|YP_329595.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae A909]
 gi|123771969|sp|Q3K1K8|DNLJ_STRA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76562591|gb|ABA45175.1| DNA ligase, NAD-dependent [Streptococcus agalactiae A909]
          Length = 652

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    RLLL+ FG ++ +S++S E++ASI+G+   IA  ++  F K  
Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 554


>gi|323705997|ref|ZP_08117567.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534611|gb|EGB24392.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 659

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ IG     +L   F T++ + +++ E L  IE I  K+A  +   F +  +
Sbjct: 507 GIDLIGSKAAGILASHFKTMESLEKATFEELTEIEEIGPKMADSVVAFFKEKQN 560


>gi|239906999|ref|YP_002953740.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
 gi|239796865|dbj|BAH75854.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
          Length = 704

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    R L   F  +  +  +S E L ++  I  ++A  I   F    +
Sbjct: 539 VGTRTARTLAGHFHDLDALGAASLEELTALPDIGPEVAGSIREFFANEAN 588


>gi|228469580|ref|ZP_04054573.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
 gi|228308930|gb|EEK17605.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
          Length = 679

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 23/45 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + F ++  +++++   L ++  +  KIA ++   F
Sbjct: 526 VGEGTAKTLARHFQSIDRLAQATAYELQALPDVGPKIAEQVVYFF 570


>gi|206974580|ref|ZP_03235496.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217960547|ref|YP_002339111.1| hypothetical protein BCAH187_A3162 [Bacillus cereus AH187]
 gi|229139747|ref|ZP_04268315.1| hypothetical protein bcere0013_28560 [Bacillus cereus BDRD-ST26]
 gi|206747223|gb|EDZ58614.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217065643|gb|ACJ79893.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|228643705|gb|EEK99968.1| hypothetical protein bcere0013_28560 [Bacillus cereus BDRD-ST26]
          Length = 213

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA+N++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 19  DDSGIYFIKDYNDNIIYIGKAFNIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|332362528|gb|EGJ40328.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1056]
          Length = 652

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ I   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSIGTVIAQSLHTYFEQEGSQ 556


>gi|324993931|gb|EGC25850.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK405]
 gi|324994750|gb|EGC26663.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK678]
 gi|327463193|gb|EGF09514.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1]
          Length = 652

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ I   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSIGTVIAQSLHTYFEQEGSQ 556


>gi|254451520|ref|ZP_05064957.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238]
 gi|198265926|gb|EDY90196.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238]
          Length = 679

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 555 SPLDEIN---------GIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603
           S L+ I          GIGP+  + L++ FG  V  +  + PE L  +EGI  K A KI
Sbjct: 35  SSLEGIEKYLGSGMIRGIGPVYAKRLVKKFGKDVFDLIEAEPERLREVEGIGPKRADKI 93


>gi|22537014|ref|NP_687865.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae 2603V/R]
 gi|81454504|sp|Q8E084|DNLJ_STRA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22533870|gb|AAM99737.1|AE014230_17 DNA ligase, NAD-dependent [Streptococcus agalactiae 2603V/R]
          Length = 652

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    RLLL+ FG ++ +S++S E++ASI+G+   IA  ++  F K  
Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 554


>gi|77414096|ref|ZP_00790264.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
 gi|77159848|gb|EAO70991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
          Length = 648

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    RLLL+ FG ++ +S++S E++ASI+G+   IA  ++  F K  
Sbjct: 498 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 550



 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQ-SF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I G GP     L        V  I R S E L +++GI +K A KIY+    +  ++
Sbjct: 432 NITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSATKIYHAIQSSKENS 489


>gi|319744895|gb|EFV97229.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae ATCC 13813]
          Length = 652

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    RLLL+ FG ++ +S++S E++ASI+G+   IA  ++  F K  
Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 554



 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQ-SF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I G GP     L        V  I R S E L +++GI +K A KIY+    +  ++
Sbjct: 436 NITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSATKIYHAIQSSKENS 493


>gi|25010923|ref|NP_735318.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae NEM316]
 gi|81457056|sp|Q8E5W1|DNLJ_STRA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23095302|emb|CAD46512.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 652

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    RLLL+ FG ++ +S++S E++ASI+G+   IA  ++  F K  
Sbjct: 502 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 554



 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQ-SF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I G GP     L        V  I R S E L +++GI +K A KIY+    +  ++
Sbjct: 436 NITGFGPSLVEKLFDAHLIADVADIYRLSIEDLLTLDGIKEKSATKIYHAIQSSKENS 493


>gi|323495433|ref|ZP_08100510.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
 gi|323310356|gb|EGA63543.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
          Length = 669

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G      L + F T++ +  +S + L  ++ I   +A  I   F ++ + 
Sbjct: 521 VGEATAANLAKHFKTLEAVQAASHDDLIEVQDIGAIVASHITAFFAQDKNQ 571


>gi|406360|gb|AAD12433.1| homology to DNA ligase M36417 [Mycoplasma genitalium]
          Length = 98

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G +  + L   F  +K +  +S E L S+  +   +A  +YN FH
Sbjct: 32  GIKHVGNVLAKNLANHFKNIKALQHASLENLISLNDVGITVAESLYNWFH 81


>gi|326330727|ref|ZP_08197031.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
 gi|325951568|gb|EGD43604.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
          Length = 702

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            I  +GP   R L   FG++  I  +S E LA+ EG+   IA  I   
Sbjct: 544 SIRHVGPSAARALATEFGSLDAIWAASQEELAATEGVGGIIAEAIVEW 591


>gi|313159317|gb|EFR58681.1| DNA ligase (NAD+) [Alistipes sp. HGB5]
          Length = 694

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L + F ++  + +++ E L   + +  +IA  I  +F    +
Sbjct: 513 VGETTAKYLAEHFRSLDAVMKATREELTEADEVGGRIADAIIEYFADEKN 562


>gi|170079101|ref|YP_001735739.1| DNA protecting protein [Synechococcus sp. PCC 7002]
 gi|169886770|gb|ACB00484.1| DNA protecting protein [Synechococcus sp. PCC 7002]
          Length = 381

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 27/47 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +I G+GP R + +   FG+++   ++S + L +++G+  K+   I  
Sbjct: 11  QIKGVGPSRLKKIWHCFGSMERAWQASGQELGAVDGLGDKLIRLILA 57


>gi|218295128|ref|ZP_03495964.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
 gi|218244331|gb|EED10856.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
          Length = 674

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            + G+G +  R L   FG +  +  +  E L  +EG+ +  A  I N   
Sbjct: 514 GLPGVGEVLARNLALRFGHMDRLLEAGLEDLLEVEGVGELTARAILNTLK 563


>gi|302558233|ref|ZP_07310575.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
 gi|302475851|gb|EFL38944.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
          Length = 731

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            +   S    I  +GP+    L + F ++  I +++ E LA+ EG+   IA  +   F +
Sbjct: 556 ARVLTS--LSIRHVGPVAAEALAREFRSIDRIEQATEEELAATEGVGGIIAASLKQWFAE 613

Query: 610 N 610
           +
Sbjct: 614 D 614


>gi|53803401|ref|YP_114852.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
 gi|81681278|sp|Q604U8|DNLJ_METCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53757162|gb|AAU91453.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
          Length = 673

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G +  ++L + FG+++ +  ++ E L ++  +   ++  I   F
Sbjct: 522 VGEVTAKVLSEHFGSLEALMEATEEELLAVADVGPVVSRHIRLFF 566


>gi|7674018|sp|Q9ZFY8|DNLJ_THESK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|4235370|gb|AAD13188.1| NAD-dependent DNA ligase [Thermus sp. AK16D]
          Length = 674

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            + G+G +  R L   FG +  +  +  E L  +EG+ +  A  I N   
Sbjct: 514 GLPGVGEVLARNLALRFGHMDRLLEAGLEDLLEVEGVGELTARAILNTLK 563


>gi|253997552|ref|YP_003049616.1| DNA protecting protein DprA [Methylotenera mobilis JLW8]
 gi|253984231|gb|ACT49089.1| DNA protecting protein DprA [Methylotenera mobilis JLW8]
          Length = 370

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K+ +  L  I+GIGP     LL++FG+   I  +S   L  +  +S  IA  I
Sbjct: 11  KSLWVSLGSISGIGPQTFCQLLRAFGSPYNIYAASLSQLKEV--VSATIANAI 61


>gi|254478702|ref|ZP_05092073.1| hypothetical protein CDSM653_287 [Carboxydibrachium pacificum DSM
           12653]
 gi|214035389|gb|EEB76092.1| hypothetical protein CDSM653_287 [Carboxydibrachium pacificum DSM
           12653]
          Length = 391

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL+ I  IG      L+  FG+ +  +  +S E L  + G  +K A  I   
Sbjct: 321 PLEFIPNIGKRTVEKLVHHFGSELYALHEASYEDLEKVVG--EKNALNILKA 370


>gi|20807760|ref|NP_622931.1| hypothetical protein TTE1311 [Thermoanaerobacter tengcongensis MB4]
 gi|20516315|gb|AAM24535.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 391

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL+ I  IG      L+  FG+ +  +  +S E L  + G  +K A  I   
Sbjct: 321 PLEFIPNIGKRTVEKLVHHFGSELYALHEASYEDLEKVVG--EKNALNILKA 370


>gi|14590190|ref|NP_142255.1| DNA repair and recombination protein RadA [Pyrococcus horikoshii
           OT3]
 gi|13878667|sp|O58001|RADA_PYRHO RecName: Full=DNA repair and recombination protein radA; Contains:
           RecName: Full=Pho radA intein
 gi|3256652|dbj|BAA29335.1| 529aa long hypothetical DNA repair protein [Pyrococcus horikoshii
           OT3]
          Length = 529

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           ++ G+GP     L ++ F T++ I+ +SP  L  + GIS+  A KI     K  +
Sbjct: 47  DLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAAN 101


>gi|307244714|ref|ZP_07526816.1| DNA integrity scanning family protein [Peptostreptococcus stomatis
           DSM 17678]
 gi|306491891|gb|EFM63942.1| DNA integrity scanning family protein [Peptostreptococcus stomatis
           DSM 17678]
          Length = 358

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            GI       L++ FG+ + I  +S E L  ++GI +  A  I N  
Sbjct: 303 EGI----IDNLIEHFGSFQDILEASIEELDEVDGIGEIRATYIRNGL 345


>gi|124006376|ref|ZP_01691210.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134]
 gi|123988033|gb|EAY27704.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134]
          Length = 691

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L   F T++ I ++S + L ++E I  +IA  +  HF    +
Sbjct: 521 VGKTVAQKLAVHFKTMEAIQKASHDELVAVEDIGGRIADSLIEHFKDTEN 570


>gi|57641371|ref|YP_183849.1| alpha-amylase [Thermococcus kodakarensis KOD1]
 gi|57159695|dbj|BAD85625.1| probable alpha-amylase, GH57 family [Thermococcus kodakarensis
           KOD1]
          Length = 675

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 546 RKRRKKAAY---SPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598
           RK  KKA     S L  I GIGP   + L +  G  T++ +  ++ E LA   GIS K
Sbjct: 609 RKVSKKAPSKGPSDLLSIKGIGPKTFQKL-KRAGVETIEDLKNANIEDLARKTGISTK 665


>gi|298372045|ref|ZP_06982035.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274949|gb|EFI16500.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
          Length = 670

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           +G    + L ++F +++ +  ++ E L  ++ I + IA  + ++F K  
Sbjct: 517 VGETVAKRLAKAFPSIEQLEEATLEQLIQVDEIGEVIARSVVDYFAKEE 565


>gi|33602779|ref|NP_890339.1| DNA ligase [Bordetella bronchiseptica RB50]
 gi|81429836|sp|Q7WCJ7|DNLJ_BORBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33577221|emb|CAE35778.1| DNA ligase [Bordetella bronchiseptica RB50]
          Length = 696

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R + + FG+++ I  +S E L ++  +   +A  I   F +
Sbjct: 545 GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595


>gi|33597876|ref|NP_885519.1| DNA ligase [Bordetella parapertussis 12822]
 gi|81425567|sp|Q7W0T4|DNLJ_BORPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33574305|emb|CAE38638.1| DNA ligase [Bordetella parapertussis]
          Length = 696

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R + + FG+++ I  +S E L ++  +   +A  I   F +
Sbjct: 545 GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595


>gi|33594429|ref|NP_882073.1| DNA ligase [Bordetella pertussis Tohama I]
 gi|81424006|sp|Q7VRX7|DNLJ_BORPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33564504|emb|CAE43819.1| DNA ligase [Bordetella pertussis Tohama I]
 gi|332383840|gb|AEE68687.1| DNA ligase [Bordetella pertussis CS]
          Length = 696

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R + + FG+++ I  +S E L ++  +   +A  I   F +
Sbjct: 545 GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595


>gi|20092352|ref|NP_618427.1| DNA repair and recombination protein RadA [Methanosarcina
           acetivorans C2A]
 gi|34395790|sp|Q8TK71|RADA_METAC RecName: Full=DNA repair and recombination protein radA
 gi|19917601|gb|AAM06907.1| DNA repair protein [Methanosarcina acetivorans C2A]
          Length = 325

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+E+ G+GP     L ++ F TV+ ++ +SP  LA+   I +  A KI N
Sbjct: 5   ALEELPGVGPATAEKLKEAGFNTVEAVAVASPSELATTAEIGESTAAKIIN 55


>gi|332299534|ref|YP_004441455.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176597|gb|AEE12287.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
          Length = 679

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 23/45 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + F ++  +++++   L ++  +  KIA ++   F
Sbjct: 526 VGEGTAKTLARHFQSIDRLAQATDYELQALPDVGPKIAEQVVYFF 570


>gi|313886637|ref|ZP_07820349.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923933|gb|EFR34730.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
          Length = 679

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 23/45 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + F ++  +++++   L ++  +  KIA ++   F
Sbjct: 526 VGEGTAKTLARHFQSIDRLAQATDYELQALPDVGPKIAEQVVYFF 570


>gi|309792382|ref|ZP_07686850.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
 gi|308225603|gb|EFO79363.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
          Length = 674

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKN 610
           +G +  + L   +G++  I  ++   L  IEGI   +A  + + F H  
Sbjct: 525 VGSVAAQTLANQYGSLDAIMAATQADLEQIEGIGPVLAASVVDFFQHPE 573


>gi|291278945|ref|YP_003495780.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
 gi|290753647|dbj|BAI80024.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
          Length = 663

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    R+L   F  ++ + +++ E L SI+ + + IA  +Y      
Sbjct: 506 GIRHVGIKTARILTNHFKNIEKLQKATIEELVSIDEVGEIIAKSVYYTLRDE 557


>gi|317127163|ref|YP_004093445.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
 gi|315472111|gb|ADU28714.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
          Length = 670

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    + L Q F T+  I  ++ E L +I  + +K+A  +  +F
Sbjct: 511 GIRHVGAKAAKTLAQHFNTIDQIQNATREDLEAINEVGEKMADAVVTYF 559


>gi|217970592|ref|YP_002355826.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
 gi|217507919|gb|ACK54930.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
          Length = 693

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R L + FG +  +  +  + L  +  +   +A  I   F +
Sbjct: 535 GIRNVGEATARDLARHFGKLDALIAADVDALQQVPDVGPIVAKCIAEFFAE 585


>gi|77407286|ref|ZP_00784228.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
 gi|77174105|gb|EAO77032.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
          Length = 223

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    RLLL+ FG ++ +S++S E++ASI+G+   IA  ++  F K  
Sbjct: 114 GIRHVGSKASRLLLEEFGNLRQLSQASQESIASIDGLGGVIAKSLHTFFEKEE 166


>gi|156937796|ref|YP_001435592.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis
           KIN4/I]
 gi|166218760|sp|A8AB83|RADA_IGNH4 RecName: Full=DNA repair and recombination protein radA
 gi|156566780|gb|ABU82185.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis
           KIN4/I]
          Length = 327

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           E+ G+GP     L+ + +GT++ ++ ++PE L +I GI    A KI   
Sbjct: 16  ELPGVGPSTAAKLIDAGYGTIEALAVATPEELVAI-GIPLTTAQKIIRA 63


>gi|118445181|ref|YP_891150.1| excinuclease ABC subunit C [Bacillus thuringiensis str. Al Hakam]
 gi|118419742|gb|ABK88160.1| possible excinuclease ABC subunit [Bacillus thuringiensis str. Al
          Hakam]
          Length = 274

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
          GVY + D+   ++YVGK  +++KR+ ++    +       +    N I + +  + ++  
Sbjct: 22 GVYLITDVEDNIIYVGKGLSIKKRVNAHFKGYSKN--TQELSYLFNKIAYILEESPLKRS 79

Query: 71 LLEANMIKRLK 81
          LLE   +   K
Sbjct: 80 LLEIQFMIEYK 90


>gi|311113170|ref|YP_003984392.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
 gi|310944664|gb|ADP40958.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
          Length = 740

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I+++  + LA+++G+   IA  I   F
Sbjct: 579 SIRHVGPTAARALATEFGSMDAIAQADRDRLAAVDGVGGVIADSIIEWF 627


>gi|225849802|ref|YP_002730036.1| protein smf (DNA-processing chain A) [Persephonella marina EX-H1]
 gi|225645083|gb|ACO03269.1| protein smf (DNA-processing chain A) [Persephonella marina EX-H1]
          Length = 352

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L  I GIG    +LL+ +FG+ + I + S   L+S+ G S  +A  I  
Sbjct: 8   QLSYIKGIGNKTLKLLINTFGSPENIFQLSFSELSSVVGSS--VAELILK 55


>gi|20093551|ref|NP_613398.1| superfamily II helicase [Methanopyrus kandleri AV19]
 gi|19886395|gb|AAM01328.1| Predicted Superfamily II helicase [Methanopyrus kandleri AV19]
          Length = 711

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L E+ G+G      L ++ + +V+ ++ ++   L  + GI +++A KI  
Sbjct: 653 ELTEVEGVGRTLAMRLYRAGYHSVRDLAEATVPELTRVRGIGEQLARKILE 703


>gi|227356188|ref|ZP_03840577.1| DNA ligase [Proteus mirabilis ATCC 29906]
 gi|227163652|gb|EEI48568.1| DNA ligase [Proteus mirabilis ATCC 29906]
          Length = 675

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 21/48 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F +++ +  ++ E L ++  +   +A  + N F + 
Sbjct: 521 VGEATANGLTAHFVSLEALREANIEALKAVPDVGDIVAKHVVNFFQEE 568


>gi|197285679|ref|YP_002151551.1| NAD-dependent DNA ligase LigA [Proteus mirabilis HI4320]
 gi|254781393|sp|B4EZR2|DNLJ_PROMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194683166|emb|CAR43788.1| DNA ligase [Proteus mirabilis HI4320]
          Length = 675

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 21/48 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F +++ +  ++ E L ++  +   +A  + N F + 
Sbjct: 521 VGEATANGLTAHFVSLEALREANIEALKAVPDVGDIVAKHVVNFFQEE 568


>gi|77359784|ref|YP_339359.1| competence protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874695|emb|CAI85916.1| conserved protein of unknown function; putative competence protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 99

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKI 603
           S L ++ GIG  + + ++           +     S E L  ++GI KK+A K+
Sbjct: 47  SQLSKLPGIGKKKAQAIIDY-------REAKGNFTSLEDLKMVKGIGKKLAAKL 93


>gi|120554094|ref|YP_958445.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
 gi|166215819|sp|A1TZT9|DNLJ_MARAV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120323943|gb|ABM18258.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
          Length = 678

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L   FGT++ IS +  ETL ++  +   +A  I + F
Sbjct: 524 VGEATAKGLAAHFGTLEAISAADEETLQTVPDVGPIVAGHIRSFF 568


>gi|302554316|ref|ZP_07306658.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
           40736]
 gi|302471934|gb|EFL35027.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
           40736]
          Length = 731

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            +   S    I  +GP+    L + F +++ I +++ E LA  EG+   IA  +   F +
Sbjct: 556 ARIITS--LSIRHVGPVAAEALAREFRSIERIDQATEEELAVTEGVGPTIAASLKQWFAE 613

Query: 610 N 610
           +
Sbjct: 614 D 614


>gi|157819415|ref|NP_001099698.1| DNA excision repair protein ERCC-1 [Rattus norvegicus]
 gi|149056779|gb|EDM08210.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (predicted), isoform CRA_a
           [Rattus norvegicus]
 gi|149056780|gb|EDM08211.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 298

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A +++   H+
Sbjct: 251 QTLLTTFGSLEQLITASREDLALCPGLGPQKARRLFEVLHE 291


>gi|296131790|ref|YP_003639037.1| DNA integrity scanning, DisA, linker region [Thermincola sp. JR]
 gi|296030368|gb|ADG81136.1| DNA integrity scanning, DisA, linker region [Thermincola potens JR]
          Length = 359

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+ +F +++ I  +S E L  +EGI +  A  I     +
Sbjct: 306 IENLVNNFKSLQRILNASIEELDDVEGIGEVRARAIKEGLKR 347


>gi|332799337|ref|YP_004460836.1| PHP domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332697072|gb|AEE91529.1| PHP domain protein [Tepidanaerobacter sp. Re1]
          Length = 392

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PL+ I GIG      LL +FGT + +I  +  + L+ +  I ++ A  I
Sbjct: 320 PLEFIPGIGKKTIEKLLLNFGTEMDVIHNTDIKELSEV--IGEQKAKNI 366


>gi|300710392|ref|YP_003736206.1| 50S ribosomal protein L32e [Halalkalicoccus jeotgali B3]
 gi|299124075|gb|ADJ14414.1| 50S ribosomal protein L32e [Halalkalicoccus jeotgali B3]
          Length = 234

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + L +I+G+G  +   L  + +  V+ +  +S + LA +EGI   +A +I  
Sbjct: 6   TELTDISGVGDSKADALRAAGYEDVEDVKAASQDDLAEVEGIGNALAARIKA 57


>gi|224130994|ref|XP_002328427.1| predicted protein [Populus trichocarpa]
 gi|222838142|gb|EEE76507.1| predicted protein [Populus trichocarpa]
          Length = 382

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I  +S E LA   GI ++   ++Y+ FH+
Sbjct: 253 FGSLSNIMDASMEDLARCPGIGERKVKRLYDTFHE 287


>gi|126658133|ref|ZP_01729284.1| SMF protein [Cyanothece sp. CCY0110]
 gi|126620504|gb|EAZ91222.1| SMF protein [Cyanothece sp. CCY0110]
          Length = 375

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +I G+GP+  + + Q FG ++   ++SPE L  +EGI  K+   I  
Sbjct: 13  KIPGVGPVLLKRVWQQFGNLETAWKASPEALCQVEGIGAKLLNTIKQ 59


>gi|46199091|ref|YP_004758.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
 gi|46196715|gb|AAS81131.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
          Length = 575

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 545 HRKRRKKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRS-SPETLASIEGISKKI 599
           H +  +K     L+  E+ G+GP   RLL +  G  +++ +  +     L  ++G   K 
Sbjct: 81  HEELSQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKR 140

Query: 600 ACKIYNHF 607
           A +I    
Sbjct: 141 AERIREGL 148


>gi|300742472|ref|ZP_07072493.1| putative DNA-binding protein [Rothia dentocariosa M567]
 gi|311112367|ref|YP_003983589.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931]
 gi|300381657|gb|EFJ78219.1| putative DNA-binding protein [Rothia dentocariosa M567]
 gi|310943861|gb|ADP40155.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931]
          Length = 354

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           LD I  I       L++ FGT++ +  +S E L  ++GI +  A  +    
Sbjct: 292 LDGIATIPNTIAERLVERFGTLQALMAASLEDLRDVDGIGEHRARTVRESL 342


>gi|253700153|ref|YP_003021342.1| DNA protecting protein DprA [Geobacter sp. M21]
 gi|251775003|gb|ACT17584.1| DNA protecting protein DprA [Geobacter sp. M21]
          Length = 359

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI--YNHFHKNTSH 613
           +G +    LL  FGT +   ++S + L+ ++G+S + A  I  +++ H+ +S 
Sbjct: 15  VGNVTFLRLLSRFGTPERALKASLQELSEVKGVSPQAAASIAGHDYAHQASSE 67


>gi|119872658|ref|YP_930665.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum
           islandicum DSM 4184]
 gi|119674066|gb|ABL88322.1| DEAD/DEAH box helicase domain protein [Pyrobaculum islandicum DSM
           4184]
          Length = 706

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 562 GIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           G+G +R R L   FG  TV+ I+R+S   +AS+ G  +K+A  I  
Sbjct: 653 GVGRVRARTLYN-FGYRTVRDIARASIREIASLPGFGEKLAKSIIE 697


>gi|29829290|ref|NP_823924.1| NAD-dependent DNA ligase LigA [Streptomyces avermitilis MA-4680]
 gi|81719851|sp|Q82JK7|DNLJ_STRAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29606397|dbj|BAC70459.1| putative DNA ligase [Streptomyces avermitilis MA-4680]
          Length = 730

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 18/79 (22%)

Query: 549 RKKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           RK A  S LD I             G     +GP+    L ++F ++  I +++ E L  
Sbjct: 536 RKNAI-SMLDNIAAAKERPLARILTGLSIRHVGPVAAEALARAFRSIDRIDQATEEELKD 594

Query: 592 IEGISKKIACKIYNHFHKN 610
            +G+   +A  +   F ++
Sbjct: 595 TDGVGPIVAAAVKQWFAED 613


>gi|55981119|ref|YP_144416.1| DNA polymerase beta family protein [Thermus thermophilus HB8]
 gi|55772532|dbj|BAD70973.1| DNA polymerase beta family (X family) [Thermus thermophilus HB8]
          Length = 575

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 545 HRKRRKKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRS-SPETLASIEGISKKI 599
           H +  +K     L+  E+ G+GP   RLL +  G  +++ +  +     L  ++G   K 
Sbjct: 81  HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKR 140

Query: 600 ACKIYNHF 607
           A +I    
Sbjct: 141 AERIREGL 148


>gi|332796520|ref|YP_004458020.1| nucleotide excision repair nuclease, Xpf [Acidianus hospitalis W1]
 gi|332694255|gb|AEE93722.1| nucleotide excision repair nuclease, Xpf [Acidianus hospitalis W1]
          Length = 230

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +    IG +  + LL+ F T++ I  +S   L  + G S+K A ++Y   
Sbjct: 161 ESFPNIGEVNAKKLLEKFSTIRNICNASISDLERVLG-SRKRAEELYKIL 209


>gi|311898479|dbj|BAJ30887.1| putative DNA ligase [Kitasatospora setae KM-6054]
          Length = 788

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 547 KRRKKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
             R  A  SPL        I  +GP+  + L + F  +  +  +    L ++EGI   IA
Sbjct: 561 NLRA-ARTSPLWRFLNGLSIRHVGPVAAQALAREFRDLDRVFAADETELTAVEGIGPTIA 619

Query: 601 CKIYNHFHKN 610
             +   + ++
Sbjct: 620 RAVKEWYAED 629


>gi|154151638|ref|YP_001405256.1| DNA repair and recombination protein RadA [Candidatus Methanoregula
           boonei 6A8]
 gi|154000190|gb|ABS56613.1| DNA repair and recombination protein RadA [Methanoregula boonei
           6A8]
          Length = 325

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            ++++ G+GP     L ++ + +V+ I+ +SP  L+ I  IS+  A KI     ++  
Sbjct: 7   EIEDLPGVGPSTADKLREAGYLSVESIATASPAELSEITEISESTAKKIIKAARESAD 64


>gi|119539|sp|P07903|ERCC1_MOUSE RecName: Full=DNA excision repair protein ERCC-1
 gi|50855|emb|CAA30310.1| unnamed protein product [Mus musculus]
          Length = 298

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A +++   H+
Sbjct: 251 QTLLATFGSLEQLFTASREDLALCPGLGPQKARRLFEVLHE 291


>gi|187960064|ref|NP_031974.2| DNA excision repair protein ERCC-1 isoform a [Mus musculus]
 gi|15029977|gb|AAH11224.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 1 [Mus musculus]
 gi|26353238|dbj|BAC40249.1| unnamed protein product [Mus musculus]
 gi|74203782|dbj|BAE23112.1| unnamed protein product [Mus musculus]
 gi|148691190|gb|EDL23137.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 1 [Mus musculus]
          Length = 298

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A +++   H+
Sbjct: 251 QTLLATFGSLEQLFTASREDLALCPGLGPQKARRLFEVLHE 291


>gi|315655583|ref|ZP_07908481.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333]
 gi|315489647|gb|EFU79274.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333]
          Length = 794

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R + + F T+  I  +S E L  +EG+ + IA  I++ F
Sbjct: 631 SIRHLGPVAARTIARQFATMSAIRAASVEQLGEVEGVGEVIAASIHDWF 679


>gi|306835907|ref|ZP_07468900.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726]
 gi|304568181|gb|EFM43753.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726]
          Length = 689

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R L   +G+++ +  +  E LA ++G+   IA   +  F
Sbjct: 534 SIRHVGPIAARALAARYGSMEKLRAAKTEDLAEVDGVGAVIAESFHAWF 582


>gi|306825436|ref|ZP_07458776.1| competence protein CelA [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432374|gb|EFM35350.1| competence protein CelA [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 216

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA+   L +I G+G  R + ++        F +V        + L  + GI  K   K+ 
Sbjct: 159 KASLEELKQIKGLGGKRAQDIIDHRETNGKFKSV--------DELKKVSGIGAKTIEKLK 210

Query: 605 NH 606
           ++
Sbjct: 211 DY 212


>gi|227501728|ref|ZP_03931777.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725]
 gi|227077753|gb|EEI15716.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725]
          Length = 680

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R L   +G+++ +  +  E LA ++G+   IA   +  F
Sbjct: 525 SIRHVGPIAARALAARYGSMEKLRAAKTEDLAEVDGVGAVIAESFHAWF 573


>gi|195056714|ref|XP_001995148.1| GH22789 [Drosophila grimshawi]
 gi|193899354|gb|EDV98220.1| GH22789 [Drosophila grimshawi]
          Length = 254

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LLQ FG ++ +  +S E LA + G+  + A K+Y   H+
Sbjct: 196 ALTNIKPVNKTDAVTLLQIFGNLENLINASEERLAQVMGLGPRKAKKLYKTLHE 249


>gi|296110658|ref|YP_003621039.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295832189|gb|ADG40070.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 681

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 29/46 (63%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +G    RL+ + F T+ +I+R++   +A+I+GI + IA  +  +F+
Sbjct: 526 VGAKAARLIAEKFKTLSVIARATVSEIANIDGIGETIARSLVQYFN 571


>gi|393385|emb|CAA52039.1| unnamed protein product [Trimorphomyces papilionaceus]
          Length = 302

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 14/89 (15%)

Query: 10  PGVYQMLDI-AGRVLYVGKAYNLQKRIKSYMH-SNNHTHRITH-------MISQINNIRF 60
           PGVY+ +D  +  VLYVG + NL  R+ +Y+   +++T +          ++SQ   +  
Sbjct: 138 PGVYKFVDKVSNXVLYVGSSVNLGARVNAYLKPKSSNTIKGPMGAFVRGDLLSQAK-LEV 196

Query: 61  TVTCTEVEALLL---EANMIKRLKPRFNI 86
               +   +LL    E   I    P FN+
Sbjct: 197 LPLPSVF-SLLHISIEQFFILLYNPLFNV 224


>gi|183599716|ref|ZP_02961209.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
 gi|188021975|gb|EDU60015.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
          Length = 671

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 25/52 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   +GT++ +  +  E+L +++ +   +A  + N F +  + T
Sbjct: 519 VGEATAANLAAHYGTLEALMAADEESLKTVQDVGHVVAKHVVNFFREEHNQT 570


>gi|310768269|gb|ADP13219.1| NAD-dependent DNA ligase LigA [Erwinia sp. Ejp617]
          Length = 670

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ +G      L   FGT+  +  +  + L +++ + K +A  + N   + ++
Sbjct: 514 GISEVGEATAANLAAHFGTLDALMAADLDALMAVQDVGKVVASHVRNFLDEESN 567


>gi|259907817|ref|YP_002648173.1| NAD-dependent DNA ligase LigA [Erwinia pyrifoliae Ep1/96]
 gi|224963439|emb|CAX54927.1| DNA ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477688|emb|CAY73604.1| DNA ligase [Erwinia pyrifoliae DSM 12163]
          Length = 678

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ +G      L   FGT+  +  +  + L +++ + K +A  + N   + ++
Sbjct: 514 GISEVGEATAANLAAHFGTLDALMAADLDALMAVQDVGKVVASHVRNFLDEESN 567


>gi|218779037|ref|YP_002430355.1| DNA protecting protein DprA [Desulfatibacillum alkenivorans AK-01]
 gi|218760421|gb|ACL02887.1| DNA protecting protein DprA [Desulfatibacillum alkenivorans AK-01]
          Length = 375

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  + GIG L  R LL+ F   + + ++S   L +++GIS ++A  I NH
Sbjct: 10  LKSVPGIGNLLFRRLLERFSHPEEVIKASQAKLTAVQGISPRLARAILNH 59


>gi|315180839|gb|ADT87753.1| DNA ligase [Vibrio furnissii NCTC 11218]
          Length = 669

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G      L   F T+  I  ++ E L  +  +   +A  ++  F +  + 
Sbjct: 520 VGEATAMNLAHHFLTLDAIREATIEQLIEVPDVGTIVASHVHAFFAQERNQ 570


>gi|294649516|ref|ZP_06726937.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824577|gb|EFF83359.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
           19194]
          Length = 675

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+G    R+L  +F T+  +  +  E+L     +    A  I + F 
Sbjct: 521 GIRGVGETTARMLANTFQTLDALKAADVESLKKTPDVGDITAEWIADFFQ 570


>gi|289165264|ref|YP_003455402.1| DNA ligase [Legionella longbeachae NSW150]
 gi|288858437|emb|CBJ12315.1| DNA ligase [Legionella longbeachae NSW150]
          Length = 671

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK   S       I  IG    R+L + FG ++ IS ++   L S+E +    A  I + 
Sbjct: 507 KKTTLSRFLYALGIREIGEASARVLAEHFGDIEAISNATEADLMSLEDMGPVGAANIVHF 566

Query: 607 F 607
           F
Sbjct: 567 F 567


>gi|288556390|ref|YP_003428325.1| excinuclease ABC C subunit domain-containing protein [Bacillus
           pseudofirmus OF4]
 gi|288547550|gb|ADC51433.1| Excinuclease ABC C subunit domain protein [Bacillus pseudofirmus
           OF4]
          Length = 118

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +    +L+VGKA  L++RIK +        ++     ++  I   +    V   
Sbjct: 39  GIFMFYNDKKELLFVGKARKLRQRIKKHFEDTVSPIKVHR--DEVAKIDVCIIEDPVHRE 96

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I  LK ++N+
Sbjct: 97  IYETYIINELKAKYNV 112


>gi|270159993|ref|ZP_06188649.1| DNA ligase [Legionella longbeachae D-4968]
 gi|269988332|gb|EEZ94587.1| DNA ligase [Legionella longbeachae D-4968]
          Length = 671

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK   S       I  IG    R+L + FG ++ IS ++   L S+E +    A  I + 
Sbjct: 507 KKTTLSRFLYALGIREIGEASARVLAEHFGDIEAISNATEADLMSLEDMGPVGAANIVHF 566

Query: 607 F 607
           F
Sbjct: 567 F 567


>gi|229083590|ref|ZP_04215919.1| DNA ligase [Bacillus cereus Rock3-44]
 gi|228699722|gb|EEL52378.1| DNA ligase [Bacillus cereus Rock3-44]
          Length = 669

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R L + F T+ ++ +++ E L  I  I +K+A  I  +F    
Sbjct: 512 GIRHVGAKAARTLAEHFETMDLLVKATEEELKEINEIGEKMAQSIVTYFDNED 564


>gi|226953496|ref|ZP_03823960.1| DNA ligase [Acinetobacter sp. ATCC 27244]
 gi|226835781|gb|EEH68164.1| DNA ligase [Acinetobacter sp. ATCC 27244]
          Length = 675

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+G    R+L  +F T+  +  +  E+L     +    A  I + F 
Sbjct: 521 GIRGVGETTARMLANTFQTLDALKAADVESLKKTPDVGDITAEWIADFFQ 570


>gi|154484656|ref|ZP_02027104.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC
           27560]
 gi|149734504|gb|EDM50421.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC
           27560]
          Length = 655

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 559 EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    +L+ ++F   ++ I  +S E L  I+GI + +A K   +F    +
Sbjct: 496 GIPNIGSANAKLICKAFNNNIEKIRNASVEELIEIDGIGEIMAEKFCQYFADEDN 550


>gi|322388003|ref|ZP_08061610.1| competence protein CelA [Streptococcus infantis ATCC 700779]
 gi|321141276|gb|EFX36774.1| competence protein CelA [Streptococcus infantis ATCC 700779]
          Length = 213

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KA+   L ++ G+G  R + ++    +       S + L  + GI  K   K+  +
Sbjct: 156 KASLEELKQVKGLGAKRAQDIIDHRESNGKFK--SVDELKKVSGIGAKTIEKLKEY 209



 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++++S E L  ++G+  K A  I +H
Sbjct: 153 NLNKASLEELKQVKGLGAKRAQDIIDH 179


>gi|226356158|ref|YP_002785898.1| DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
 gi|254778151|sp|C1CVC7|DNLJ2_DEIDV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|226318148|gb|ACO46144.1| putative DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
          Length = 686

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L ++FG++  + R++PE + ++ G+ K  A  +    
Sbjct: 524 VGERNAQALARAFGSLDALLRATPEQIEAVPGMGKVTAVSVSAAL 568


>gi|15790649|ref|NP_280473.1| 50S ribosomal protein L32e [Halobacterium sp. NRC-1]
 gi|169236388|ref|YP_001689588.1| 50S ribosomal protein L32e [Halobacterium salinarum R1]
 gi|13431823|sp|Q9HPB7|RL32_HALSA RecName: Full=50S ribosomal protein L32e; AltName: Full=HL5
 gi|10581176|gb|AAG19953.1| 50S ribosomal protein L32E [Halobacterium sp. NRC-1]
 gi|167727454|emb|CAP14242.1| ribosomal protein L32.eR [Halobacterium salinarum R1]
          Length = 239

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L +I+G+GP +   L ++ F +V  +  +    LA  +GI   +A +I  
Sbjct: 10  ELADISGVGPSKAEALAEAGFESVADVQAADQSELAEADGIGNALAARIKA 60


>gi|294813204|ref|ZP_06771847.1| DNA integrity scanning protein disA [Streptomyces clavuligerus ATCC
           27064]
 gi|326441684|ref|ZP_08216418.1| DNA integrity scanning protein DisA [Streptomyces clavuligerus ATCC
           27064]
 gi|294325803|gb|EFG07446.1| DNA integrity scanning protein disA [Streptomyces clavuligerus ATCC
           27064]
          Length = 383

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 331 IERLVEHFGGLQKLLAASVDDLQAVDGVGEARARSVREGL 370


>gi|320010088|gb|ADW04938.1| DNA integrity scanning, DisA, linker region [Streptomyces
           flavogriseus ATCC 33331]
          Length = 374

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQAVDGVGEARARSVREGL 361


>gi|297192897|ref|ZP_06910295.1| DNA integrity scanning protein disA [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722614|gb|EDY66522.1| DNA integrity scanning protein disA [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 374

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQAVDGVGEARARSVREGL 361


>gi|320014458|gb|ADV98029.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 670

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  +  +  ETL S+  + + +A  + N   + 
Sbjct: 520 VGEATAANLAAHFRTLDNLRAADIETLKSVPDVGEVVAKHVMNFLSEE 567


>gi|294504743|ref|YP_003568805.1| DNA ligase [Yersinia pestis Z176003]
 gi|262362805|gb|ACY59526.1| DNA ligase [Yersinia pestis D106004]
 gi|262366729|gb|ACY63286.1| DNA ligase [Yersinia pestis D182038]
 gi|294355202|gb|ADE65543.1| DNA ligase [Yersinia pestis Z176003]
          Length = 656

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  +  +  ETL S+  + + +A  + N   + 
Sbjct: 506 VGEATAANLAAHFRTLDNLRAADIETLKSVPDVGEVVAKHVMNFLSEE 553


>gi|220904693|ref|YP_002480005.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254781312|sp|B8J0Q0|DNLJ_DESDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219868992|gb|ACL49327.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 712

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
              S L  I  +G    R L   F T+  +  +  ETL S+  +  ++A  I+N F+
Sbjct: 538 RLISAL-GIRHVGEQTARTLALHFETLDELENAGAETLLSLPDVGPEVASSIHNFFN 593


>gi|162448184|ref|YP_001621316.1| DNA ligase [Acholeplasma laidlawii PG-8A]
 gi|190359222|sp|A9NHW0|DNLJ_ACHLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|161986291|gb|ABX81940.1| DNA ligase, NAD-dependent [Acholeplasma laidlawii PG-8A]
          Length = 659

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    + LL  + ++ +++ +  E L  I  I  +IA  +  +F   ++ 
Sbjct: 507 GIKNVGAKVAKTLLNHYPSITLLADAKYEDLIQIPDIGPEIADSVTTYFSNESNQ 561


>gi|254373281|ref|ZP_04988769.1| hypothetical protein FTCG_00864 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571007|gb|EDN36661.1| hypothetical protein FTCG_00864 [Francisella novicida GA99-3549]
          Length = 678

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G +    L   FG+++    +  E L  I  I + +A  I + +H +
Sbjct: 526 GIKDVGEVSSEALANHFGSLESFREAKFEQLIEINDIGEIMANNIVSFWHDS 577


>gi|51597030|ref|YP_071221.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
           32953]
 gi|186896113|ref|YP_001873225.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis PB1/+]
 gi|81638946|sp|Q668M6|DNLJ_YERPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781913|sp|B2K917|DNLJ_YERPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51590312|emb|CAH21949.1| DNA ligase [Yersinia pseudotuberculosis IP 32953]
 gi|186699139|gb|ACC89768.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis PB1/+]
          Length = 670

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  +  +  ETL S+  + + +A  + N   + 
Sbjct: 520 VGEATAANLAAHFRTLDNLRAADIETLKSVPDVGEVVAKHVMNFLSEE 567


>gi|153948204|ref|YP_001400300.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
           31758]
 gi|170023674|ref|YP_001720179.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis YPIII]
 gi|190359300|sp|A7FGC2|DNLJ_YERP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781915|sp|B1JFZ0|DNLJ_YERPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152959699|gb|ABS47160.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758]
 gi|169750208|gb|ACA67726.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis YPIII]
          Length = 670

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  +  +  ETL S+  + + +A  + N   + 
Sbjct: 520 VGEATAANLAAHFRTLDNLRAADIETLKSVPDVGEVVAKHVMNFLSEE 567


>gi|22125389|ref|NP_668812.1| NAD-dependent DNA ligase LigA [Yersinia pestis KIM 10]
 gi|45442391|ref|NP_993930.1| NAD-dependent DNA ligase LigA [Yersinia pestis biovar Microtus str.
           91001]
 gi|108808172|ref|YP_652088.1| NAD-dependent DNA ligase LigA [Yersinia pestis Antiqua]
 gi|108811556|ref|YP_647323.1| NAD-dependent DNA ligase LigA [Yersinia pestis Nepal516]
 gi|145599373|ref|YP_001163449.1| NAD-dependent DNA ligase LigA [Yersinia pestis Pestoides F]
 gi|149365146|ref|ZP_01887181.1| DNA ligase [Yersinia pestis CA88-4125]
 gi|162420672|ref|YP_001607138.1| NAD-dependent DNA ligase LigA [Yersinia pestis Angola]
 gi|165926903|ref|ZP_02222735.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165940356|ref|ZP_02228875.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011271|ref|ZP_02232169.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212520|ref|ZP_02238555.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398917|ref|ZP_02304441.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421338|ref|ZP_02313091.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424444|ref|ZP_02316197.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470665|ref|ZP_02335369.1| DNA ligase, NAD-dependent [Yersinia pestis FV-1]
 gi|218930038|ref|YP_002347913.1| NAD-dependent DNA ligase LigA [Yersinia pestis CO92]
 gi|229838581|ref|ZP_04458740.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895648|ref|ZP_04510819.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
 gi|229899147|ref|ZP_04514290.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901826|ref|ZP_04516947.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
 gi|270490015|ref|ZP_06207089.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
 gi|122980211|sp|Q1CJV7|DNLJ_YERPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123372308|sp|Q1C5X9|DNLJ_YERPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123776939|sp|Q7CJF3|DNLJ_YERPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216255|sp|A4TMG4|DNLJ_YERPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781914|sp|A9QZH0|DNLJ_YERPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21958274|gb|AAM85063.1|AE013752_4 DNA ligase [Yersinia pestis KIM 10]
 gi|45437255|gb|AAS62807.1| DNA ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108775204|gb|ABG17723.1| DNA ligase [Yersinia pestis Nepal516]
 gi|108780085|gb|ABG14143.1| DNA ligase [Yersinia pestis Antiqua]
 gi|115348649|emb|CAL21593.1| DNA ligase [Yersinia pestis CO92]
 gi|145211069|gb|ABP40476.1| DNA ligase [Yersinia pestis Pestoides F]
 gi|149291559|gb|EDM41633.1| DNA ligase [Yersinia pestis CA88-4125]
 gi|162353487|gb|ABX87435.1| DNA ligase, NAD-dependent [Yersinia pestis Angola]
 gi|165911711|gb|EDR30369.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921254|gb|EDR38478.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989949|gb|EDR42250.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206451|gb|EDR50931.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960827|gb|EDR56848.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051421|gb|EDR62829.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056326|gb|EDR66095.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229680722|gb|EEO76817.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
 gi|229687549|gb|EEO79622.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694947|gb|EEO84994.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701454|gb|EEO89482.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
 gi|270338519|gb|EFA49296.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
          Length = 670

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  +  +  ETL S+  + + +A  + N   + 
Sbjct: 520 VGEATAANLAAHFRTLDNLRAADIETLKSVPDVGEVVAKHVMNFLSEE 567


>gi|33322704|gb|AAQ07086.1|AF496399_1 DNA ligase [Lactobacillus delbrueckii subsp. lactis]
          Length = 116

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ +G    +L+ Q F  +  I+ +S + L +I+ I   IA  +  +F +  +
Sbjct: 11  GIDNVGRKAAQLIAQKFKNMSKIASASVQELTAIDTIGMTIAESLTAYFQQEEA 64


>gi|317121135|ref|YP_004101138.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
 gi|315591115|gb|ADU50411.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
          Length = 764

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R R  +     L  I  +G     +L + FGT+  +  + P  L ++  I  +IA
Sbjct: 520 AIDASRARPLRRLLYGL-GIRFVGERVAGVLARHFGTIHRVMEAEPAELMAVPEIGPRIA 578

Query: 601 CKIYNHFHKN 610
             +   F   
Sbjct: 579 ESVAAFFRDE 588


>gi|227530245|ref|ZP_03960294.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
 gi|227349834|gb|EEJ40125.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
          Length = 680

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    RL++  F  +  +  +S + +++++GI   I   +  +F    
Sbjct: 523 GIRHVGAKAARLIMAHFNDLDQLMGASADEISAVDGIGPTIGESVETYFANEQ 575


>gi|172040410|ref|YP_001800124.1| NAD-dependent DNA ligase LigA [Corynebacterium urealyticum DSM
           7109]
 gi|254781300|sp|B1VG01|DNLJ_CORU7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171851714|emb|CAQ04690.1| DNA ligase [Corynebacterium urealyticum DSM 7109]
          Length = 712

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L   +G++  ++ +  ET+++++G+   IA  + + F
Sbjct: 541 SIRHVGPTAAKALANHYGSIPDVAAADVETMSTVDGVGPIIAESVRDWF 589


>gi|158522455|ref|YP_001530325.1| DNA protecting protein DprA [Desulfococcus oleovorans Hxd3]
 gi|158511281|gb|ABW68248.1| DNA protecting protein DprA [Desulfococcus oleovorans Hxd3]
          Length = 389

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  + G+G L  + L+  FG+ + +  ++   L  ++GIS  +A  I  H
Sbjct: 10  LKSVPGVGNLLFKRLIDRFGSPEKVLSAARSDLLGVQGISDTLASAIRAH 59


>gi|85859097|ref|YP_461299.1| DNA repair protein [Syntrophus aciditrophicus SB]
 gi|85722188|gb|ABC77131.1| DNA repair protein [Syntrophus aciditrophicus SB]
          Length = 308

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA---CKIYN----HFHKNTSHTP 615
           + LL+ FG++K I  +  E L ++ GIS   A     +      +  +     P
Sbjct: 130 KDLLERFGSLKGIMDAELEELTAVRGISAHAAGLVRMVKEMSALYLQEKAREKP 183


>gi|89256066|ref|YP_513428.1| DNA ligase [Francisella tularensis subsp. holarctica LVS]
 gi|167009870|ref|ZP_02274801.1| DNA ligase [Francisella tularensis subsp. holarctica FSC200]
 gi|254367402|ref|ZP_04983428.1| DNA ligase [Francisella tularensis subsp. holarctica 257]
 gi|123401612|sp|Q2A4C4|DNLJ_FRATH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89143897|emb|CAJ79115.1| DNA ligase [Francisella tularensis subsp. holarctica LVS]
 gi|134253218|gb|EBA52312.1| DNA ligase [Francisella tularensis subsp. holarctica 257]
          Length = 678

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +    L   FG+++    +  E L  I  I + IA  I + +H +
Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINYIGEIIANNIVSFWHDS 577


>gi|300087757|ref|YP_003758279.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527490|gb|ADJ25958.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 687

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  IG    + L + FG++  ++++S E L SI GI  KIA  + N+F +
Sbjct: 522 GIRHIGAENAQSLAREFGSLSELAKASLERLISIPGIGVKIADSMLNYFSE 572


>gi|187477571|ref|YP_785595.1| DNA ligase [Bordetella avium 197N]
 gi|123752160|sp|Q2KUU5|DNLJ_BORA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115422157|emb|CAJ48681.1| DNA ligase [Bordetella avium 197N]
          Length = 695

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R + + FG +  I  +    L ++  +   +A  I+  F +
Sbjct: 544 GIRHVGETTARDVARHFGNIDAIMDADEAALLAVPDVGPVVAGSIHRFFQE 594


>gi|261207706|ref|ZP_05922391.1| competence protein ComEA [Enterococcus faecium TC 6]
 gi|260078089|gb|EEW65795.1| competence protein ComEA [Enterococcus faecium TC 6]
          Length = 211

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  S L +I GIG ++ + +++ F    G+ + +     E L  I GI +K   K+ N 
Sbjct: 155 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 207


>gi|221195651|ref|ZP_03568705.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626]
 gi|221184417|gb|EEE16810.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626]
          Length = 706

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G     LL Q F +++ +  ++ E +A+I G+  K+A  I   F
Sbjct: 547 GIRHVGANMAALLAQYFHSIQELQLATEEQMAAISGVGPKMAKSIKEFF 595


>gi|319892647|ref|YP_004149522.1| Late competence protein ComEA, DNA receptor [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162343|gb|ADV05886.1| Late competence protein ComEA, DNA receptor [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464315|gb|ADX76468.1| ComE operon protein 1, putative [Staphylococcus pseudintermedius
           ED99]
          Length = 222

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 14/58 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +I GIGP + + +++       F +V        E L +++GI +K   K+ N+ 
Sbjct: 171 ELTQIPGIGPSKAQTIIKHREENGPFQSV--------EDLKNVKGIGEKTFEKLKNYL 220


>gi|117927438|ref|YP_871989.1| DNA integrity scanning protein DisA [Acidothermus cellulolyticus
           11B]
 gi|226729430|sp|A0LRE3|DISA_ACIC1 RecName: Full=DNA integrity scanning protein disA
 gi|117647901|gb|ABK52003.1| protein of unknown function DUF147 [Acidothermus cellulolyticus
           11B]
          Length = 368

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FGT++ +  +S + L ++EG+ +  A  +    
Sbjct: 316 IERLVEHFGTLQKLLAASVDDLQAVEGVGESRARSVREGL 355


>gi|213024616|ref|ZP_03339063.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 130

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 22/42 (52%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L   FGT++ +  ++ + L  +  +   +A  ++N F + ++
Sbjct: 5   LAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAEESN 46


>gi|156502078|ref|YP_001428143.1| DNA ligase [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|290954221|ref|ZP_06558842.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312341|ref|ZP_06803126.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1]
 gi|166214810|sp|A7NB34|DNLJ_FRATF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156252681|gb|ABU61187.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 678

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +    L   FG+++    +  E L  I  I + IA  I + +H +
Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINYIGEIIANNIVSFWHDS 577


>gi|3297891|emb|CAA05781.1| nucleotide repair protein [Lilium longiflorum]
          Length = 278

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I  +S E LA   GI ++   ++++ FH+
Sbjct: 189 FGSLSGIMDASLEDLARCPGIGERKVKRLHDTFHE 223


>gi|322392095|ref|ZP_08065557.1| competence protein CelA [Streptococcus peroris ATCC 700780]
 gi|321144995|gb|EFX40394.1| competence protein CelA [Streptococcus peroris ATCC 700780]
          Length = 213

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KA+   L ++ G+G  R + ++    +       S + L  + GI  K   K+  +
Sbjct: 156 KASLEELKQVKGLGAKRAQDIIDHRESNGKFK--SVDDLKKVSGIGAKTIEKLKEY 209



 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++++S E L  ++G+  K A  I +H
Sbjct: 153 NLNKASLEELKQVKGLGAKRAQDIIDH 179


>gi|156973609|ref|YP_001444516.1| NAD-dependent DNA ligase LigA [Vibrio harveyi ATCC BAA-1116]
 gi|166216277|sp|A7MT54|DNLJ_VIBHB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|156525203|gb|ABU70289.1| hypothetical protein VIBHAR_01312 [Vibrio harveyi ATCC BAA-1116]
          Length = 670

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F  +  I +++ E L  ++ I   +A  I   F +  +  
Sbjct: 521 VGEATAANLAQYFKNLDAIQQATEEQLIEVQDIGVIVAKHITTFFGEEKNQA 572


>gi|150025890|ref|YP_001296716.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
 gi|166215404|sp|A6H0N9|DNLJ_FLAPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149772431|emb|CAL43913.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
          Length = 666

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L + +  +  I+ ++   L  ++ I  KIA  +   F    +
Sbjct: 515 VGETVAKKLAKHYKNIDAIANANLLELVMVDEIGDKIAQSVVEFFDNQEN 564


>gi|149002299|ref|ZP_01827241.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS69]
 gi|147759614|gb|EDK66605.1| excinuclease ABC subunit C [Streptococcus pneumoniae SP14-BS69]
          Length = 61

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 6/44 (13%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           ++ F ++  I  +S + +  + G+ + +A  +    +      P
Sbjct: 1   MKHFKSLTKIKEASVDEIVEV-GVPRVVAEAVQRKLNPQGEALP 43


>gi|331002925|ref|ZP_08326438.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413218|gb|EGG92592.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 650

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT-VKMISRSSP 586
             I  + DEA       H     +  YS    I GIG    +++ + F   +  I  +S 
Sbjct: 475 KLIAAI-DEA------RHTN-MARFLYS--LGITGIGSANAKMIARYFDNDLDRIINASK 524

Query: 587 ETLASIEGISKKIACKIYNHFHKNTS 612
           + L  IEGI + +A  I   F    +
Sbjct: 525 DDLLEIEGIGEVLANSIVEFFGNEKN 550


>gi|237785838|ref|YP_002906543.1| NAD-dependent DNA ligase LigA [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758750|gb|ACR18000.1| DNA ligase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 686

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   +G+++ I  +S E LA I+G+   IA  + + F
Sbjct: 527 SIRHVGPTAARALATKYGSLEAIRSASEEELARIDGVGSIIAASLCSWF 575


>gi|312136909|ref|YP_004004246.1| dead/deah box helicase domain protein [Methanothermus fervidus DSM
           2088]
 gi|311224628|gb|ADP77484.1| DEAD/DEAH box helicase domain protein [Methanothermus fervidus DSM
           2088]
          Length = 668

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + G+G  R R +   FG    I+  S + L  +EGI  K+A  I   F 
Sbjct: 622 VKGLGRRRARKIFNMFG--DDIASVSEKELQKVEGIGPKLASAIKKAFR 668


>gi|325121133|gb|ADY80656.1| DNA ligase [Acinetobacter calcoaceticus PHEA-2]
          Length = 679

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  +  E L     +    A  I + F
Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAADVEALKKTPDVGDITAEWIADFF 569


>gi|325294733|ref|YP_004281247.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065181|gb|ADY73188.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 574

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE--TLASIEGISKKIACKIYN 605
            L +I G+GP   +LL ++ G  +V+ + R+  E   L  + G   K   KI  
Sbjct: 92  SLLDIPGVGPKTVKLLYETLGIRSVEDLKRA-IEKGELLKLPGFGLKKVEKIKK 144


>gi|299771367|ref|YP_003733393.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
 gi|298701455|gb|ADI92020.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
          Length = 679

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  +  E L     +    A  I + F
Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAADVEALKKTPDVGDITAEWIADFF 569


>gi|293609092|ref|ZP_06691395.1| DNA ligase [Acinetobacter sp. SH024]
 gi|292829665|gb|EFF88027.1| DNA ligase [Acinetobacter sp. SH024]
          Length = 679

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  +  E L     +    A  I + F
Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAADVEALKKTPDVGDITAEWIADFF 569


>gi|290508381|ref|ZP_06547752.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
 gi|289777775|gb|EFD85772.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
          Length = 671

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 21/39 (53%)

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            FGT++ + ++S E L  +  +   +A   +N F + ++
Sbjct: 531 HFGTLEALEQASIEELQKVPDVGIVVATHTFNFFAEESN 569


>gi|262280095|ref|ZP_06057880.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
 gi|262260446|gb|EEY79179.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
          Length = 692

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  +  E L     +    A  I + F
Sbjct: 534 GIRGVGETTARMLANTFQTLEALKAADVEALKKTPDVGDITAEWIADFF 582


>gi|256617609|ref|ZP_05474455.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
 gi|257089149|ref|ZP_05583510.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
 gi|312904259|ref|ZP_07763421.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
 gi|256597136|gb|EEU16312.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
 gi|256997961|gb|EEU84481.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
 gi|310632355|gb|EFQ15638.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
 gi|315578805|gb|EFU90996.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0630]
          Length = 676

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLSTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|227517688|ref|ZP_03947737.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
 gi|257083650|ref|ZP_05578011.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
 gi|227074843|gb|EEI12806.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
 gi|256991680|gb|EEU78982.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
 gi|315146961|gb|EFT90977.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4244]
          Length = 676

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLSTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|213691626|ref|YP_002322212.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254781260|sp|B7GPV4|DNLJ_BIFLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|213523087|gb|ACJ51834.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457713|dbj|BAJ68334.1| DNA ligase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 921

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  + G++  I +++ E L +I+G+  +IA  + N F
Sbjct: 764 LGPPTARLIASAMGSLAAIEKATIEDLTAIDGVGPEIAESVVNWF 808


>gi|206579402|ref|YP_002237241.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
 gi|288934177|ref|YP_003438236.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
 gi|254781350|sp|B5XVT4|DNLJ_KLEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206568460|gb|ACI10236.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
 gi|288888906|gb|ADC57224.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
          Length = 671

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 21/39 (53%)

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            FGT++ + ++S E L  +  +   +A   +N F + ++
Sbjct: 531 HFGTLEALEQASIEELQKVPDVGIVVATHTFNFFAEESN 569


>gi|307289585|ref|ZP_07569529.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
 gi|306499399|gb|EFM68772.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
 gi|315164584|gb|EFU08601.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1302]
          Length = 676

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLSTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|109689248|dbj|BAE96778.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689250|dbj|BAE96779.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689252|dbj|BAE96780.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689254|dbj|BAE96781.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           ++ G+GP   + L+++ + T++ I+ ++P+ ++   GI    A KI + 
Sbjct: 13  DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61


>gi|109689236|dbj|BAE96772.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           ++ G+GP   + L+++ + T++ I+ ++P+ ++   GI    A KI + 
Sbjct: 13  DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61


>gi|29126622|ref|NP_803525.1| orf325 [Monoblepharella sp. JEL15]
 gi|29029520|gb|AAO64970.1| orf325 [Monoblepharella sp. JEL15]
          Length = 325

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 8  ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN 42
          + PGVY      GR  YVG++ +L  R+ SY   +
Sbjct: 51 DSPGVYYFKGPDGRD-YVGRSMSLYNRVTSYFMPS 84


>gi|18182001|dbj|BAB83908.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           ++ G+GP   + L+++ + T++ I+ ++P+ ++   GI    A KI + 
Sbjct: 13  DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61


>gi|14600463|ref|NP_146978.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1]
 gi|13878703|sp|Q9YFY1|RADA_AERPE RecName: Full=DNA repair and recombination protein radA
 gi|5103509|dbj|BAA79030.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1]
          Length = 319

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           ++ G+GP   + L+++ + T++ I+ ++P+ ++   GI    A KI + 
Sbjct: 13  DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61


>gi|18181987|dbj|BAB83901.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           ++ G+GP   + L+++ + T++ I+ ++P+ ++   GI    A KI + 
Sbjct: 13  DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61


>gi|18181991|dbj|BAB83903.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           ++ G+GP   + L+++ + T++ I+ ++P+ ++   GI    A KI + 
Sbjct: 13  DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61


>gi|18181985|dbj|BAB83900.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18181995|dbj|BAB83905.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18181997|dbj|BAB83906.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18181999|dbj|BAB83907.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18182003|dbj|BAB83909.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|18182005|dbj|BAB83910.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689234|dbj|BAE96771.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689238|dbj|BAE96773.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689240|dbj|BAE96774.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689242|dbj|BAE96775.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689244|dbj|BAE96776.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
 gi|109689246|dbj|BAE96777.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           ++ G+GP   + L+++ + T++ I+ ++P+ ++   GI    A KI + 
Sbjct: 13  DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61


>gi|18181993|dbj|BAB83904.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           ++ G+GP   + L+++ + T++ I+ ++P+ ++   GI    A KI + 
Sbjct: 13  DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDA 61


>gi|27904863|ref|NP_777989.1| putative 5'-3' exonuclease [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|38372206|sp|Q89AD1|EX53_BUCBP RecName: Full=5'-3' exonuclease
 gi|27904261|gb|AAO27094.1| putative 5'-3' exonuclease [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 302

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           D I G+   G     +LL++FG+++ I       +  I     K A  IYN+ H
Sbjct: 189 DNIPGVPTVGKKTALILLKTFGSLENIYN----NIEKIPKCLIKKAKTIYNNLH 238


>gi|332162521|ref|YP_004299098.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606605|emb|CBY28103.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666751|gb|ADZ43395.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860741|emb|CBX71032.1| DNA ligase [Yersinia enterocolitica W22703]
          Length = 672

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 19/48 (39%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F  ++ +  +  E L S+  + + +A  + N   + 
Sbjct: 520 VGEATAANLAAHFRNLENLRAADIEALKSVPDVGEVVAKHVVNFLGEE 567


>gi|317481657|ref|ZP_07940691.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916889|gb|EFV38277.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 920

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  + G++  I  ++ E L +I+G+  +IA  + N F
Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808


>gi|296454555|ref|YP_003661698.1| DNA ligase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183986|gb|ADH00868.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 920

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  + G++  I  ++ E L +I+G+  +IA  + N F
Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808


>gi|322689624|ref|YP_004209358.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691585|ref|YP_004221155.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291516189|emb|CBK69805.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum F8]
 gi|320456441|dbj|BAJ67063.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460960|dbj|BAJ71580.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
          Length = 920

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  + G++  I  ++ E L +I+G+  +IA  + N F
Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808


>gi|227832930|ref|YP_002834637.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182581|ref|ZP_06042002.1| NAD-dependent DNA ligase LigA [Corynebacterium aurimucosum ATCC
           700975]
 gi|254781299|sp|C3PFU5|DNLJ_CORA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227453946|gb|ACP32699.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975]
          Length = 674

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R L   FG+++++  +S E LA  +G+   IA      F
Sbjct: 519 SIRHVGPIAARALATRFGSMEVLRAASVEELADTDGVGTIIAESFKQWF 567


>gi|227546782|ref|ZP_03976831.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212744|gb|EEI80625.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 920

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  + G++  I  ++ E L +I+G+  +IA  + N F
Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808


>gi|239620760|ref|ZP_04663791.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|312132368|ref|YP_003999707.1| lig [Bifidobacterium longum subsp. longum BBMN68]
 gi|239516336|gb|EEQ56203.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|311772424|gb|ADQ01912.1| Lig [Bifidobacterium longum subsp. longum BBMN68]
          Length = 920

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  + G++  I  ++ E L +I+G+  +IA  + N F
Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808


>gi|123441550|ref|YP_001005536.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166216254|sp|A1JLA4|DNLJ_YERE8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122088511|emb|CAL11304.1| DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 672

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 19/48 (39%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F  ++ +  +  E L S+  + + +A  + N   + 
Sbjct: 520 VGEATAANLAAHFRNLENLRAADIEALKSVPDVGEVVAKHVVNFLGEE 567


>gi|23464680|ref|NP_695283.1| LigA [Bifidobacterium longum NCC2705]
 gi|81754681|sp|Q8G830|DNLJ_BIFLO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23325242|gb|AAN23919.1| LigA [Bifidobacterium longum NCC2705]
          Length = 920

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  + G++  I  ++ E L +I+G+  +IA  + N F
Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808


>gi|23336066|ref|ZP_00121295.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Bifidobacterium longum DJO10A]
 gi|189438929|ref|YP_001954010.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
 gi|254781259|sp|B3DPR8|DNLJ_BIFLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189427364|gb|ACD97512.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
          Length = 920

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  + G++  I  ++ E L +I+G+  +IA  + N F
Sbjct: 764 LGPPTARLIASAMGSLAAIENATIEDLTAIDGVGPEIAESVVNWF 808


>gi|222151884|ref|YP_002561044.1| DNA ligase [Macrococcus caseolyticus JCSC5402]
 gi|254781362|sp|B9E830|DNLJ_MACCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|222121013|dbj|BAH18348.1| DNA ligase [Macrococcus caseolyticus JCSC5402]
          Length = 663

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G     +L + FGT+  +  ++ ETL  I+ I +K+A  +  +     
Sbjct: 507 GIRHLGAKASMVLAREFGTMDNLKNATVETLTQIDDIGEKMAQSLVTYLQNED 559


>gi|86742328|ref|YP_482728.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
 gi|123750794|sp|Q2J6U3|DNLJ_FRASC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86569190|gb|ABD12999.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
          Length = 706

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L +   +++ I+ +S E LA++EG+  KIA  + + F
Sbjct: 530 SIRHVGPTAARALARELRSLEAIAATSAEDLAAVEGVGPKIAGAVLDWF 578


>gi|270602175|ref|ZP_06221597.1| UvrABC system, protein C [Haemophilus influenzae HK1212]
 gi|270318196|gb|EFA29407.1| UvrABC system, protein C [Haemophilus influenzae HK1212]
          Length = 113

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFS 440
           R+E +D SH MG   V   VV  + G +K+ YR+FN+    +   DD A M   L++R+ 
Sbjct: 3   RMECFDISHTMGNQTVASCVVFNQEGPLKSDYRRFNIEG--ITGGDDYAAMEQALQKRYE 60

Query: 441 QLIKNEE 447
           + ++ ++
Sbjct: 61  RDLEEDK 67


>gi|262373317|ref|ZP_06066596.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
 gi|262313342|gb|EEY94427.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
          Length = 677

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I G+G    R+L  +F T   +  ++ + L     +    A  I + F   
Sbjct: 521 GIRGVGETTARMLANTFQTFDALKAANIDALKKTPDVGDITAEWIVDFFQAE 572


>gi|94984803|ref|YP_604167.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
 gi|122986680|sp|Q1J0I6|DNLJ_DEIGD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94555084|gb|ABF44998.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
          Length = 684

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            IN +G    + L ++FGT+  +  ++PE++ ++ G+ + IA  +    
Sbjct: 531 GINHVGERNAQALARAFGTLDALLAATPESIEAVPGLGRTIAQSVSAAL 579


>gi|312173113|emb|CBX81368.1| DNA ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 670

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 26/54 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ +G      L   FGT++ +  +  + L +++ + K +A  + N   + ++
Sbjct: 514 GISEVGEATAANLAAHFGTLEALMTADLDALMAVQDVGKVVASHVRNFLDEESN 567


>gi|312865342|ref|ZP_07725570.1| DNA ligase (NAD+) [Streptococcus downei F0415]
 gi|311099453|gb|EFQ57669.1| DNA ligase (NAD+) [Streptococcus downei F0415]
          Length = 673

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    + LL+ FG++  +  +  E +A I+G+   IA  + ++F
Sbjct: 523 GIRHVGAKASKQLLEKFGSLGQLMSAKFEAIADIDGLGAVIAQSLQDYF 571


>gi|292488952|ref|YP_003531839.1| DNA ligase [Erwinia amylovora CFBP1430]
 gi|292900089|ref|YP_003539458.1| DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291199937|emb|CBJ47061.1| DNA ligase [Erwinia amylovora ATCC 49946]
 gi|291554386|emb|CBA21816.1| DNA ligase [Erwinia amylovora CFBP1430]
          Length = 670

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 26/54 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ +G      L   FGT++ +  +  + L +++ + K +A  + N   + ++
Sbjct: 514 GISEVGEATAANLAAHFGTLEALMTADLDALMAVQDVGKVVASHVRNFLDEESN 567


>gi|288941063|ref|YP_003443303.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
 gi|288896435|gb|ADC62271.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
          Length = 696

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +G    +LL +  G ++ +  +S E L +I+GI   +A  I   
Sbjct: 521 VGETTAQLLAEHVGGIEALMAASVEDLVAIKGIGPVVAAHIVGF 564


>gi|300743918|ref|ZP_07072938.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
 gi|300380279|gb|EFJ76842.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
          Length = 740

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   R L   FG++  I+++  + LA+++G+   IA  I   F
Sbjct: 583 VGPTAARALATEFGSMDAIAQADRDRLAAVDGVGGVIADSIIEWF 627


>gi|213962174|ref|ZP_03390438.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
 gi|213955180|gb|EEB66498.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
          Length = 663

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + +  ++ +  ++ E L  ++ I  +IA  + N F
Sbjct: 512 VGETVAKKLARHYKNIEALENATIEQLVEVDEIGNQIATSVVNFF 556


>gi|291538763|emb|CBL11874.1| DNA ligase, NAD-dependent [Roseburia intestinalis XB6B4]
          Length = 671

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + +++ F ++  +  +  + L  ++ + +  A  I+  FH   +
Sbjct: 513 GIPNVGKAAAKTIMKRFSSILDLENADRDALMEVDDVGEVSADCIFRFFHDEKN 566


>gi|229075120|ref|ZP_04208115.1| hypothetical protein bcere0024_28620 [Bacillus cereus Rock4-18]
 gi|228708004|gb|EEL60182.1| hypothetical protein bcere0024_28620 [Bacillus cereus Rock4-18]
          Length = 239

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 20/102 (19%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G+Y + D    ++YVGKA++++ R+ ++ +S ++   I   +   N + + +  +     
Sbjct: 48  GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS----- 99

Query: 71  LLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
           LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 100 LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYNQYIKQTNK 139


>gi|288560937|ref|YP_003424423.1| DEAD/DEAH box helicase domain-containing protein
           [Methanobrevibacter ruminantium M1]
 gi|288543647|gb|ADC47531.1| DEAD/DEAH box helicase domain-containing protein
           [Methanobrevibacter ruminantium M1]
          Length = 690

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +G  R R L+ +FG  + +   S   L  ++GI  K+A  I N 
Sbjct: 645 LGRKRARALVNTFG--EDLRPVSENELQKVDGIGPKLAKSIRNF 686


>gi|150399457|ref|YP_001323224.1| Hef nuclease [Methanococcus vannielii SB]
 gi|150012160|gb|ABR54612.1| ERCC4 domain protein [Methanococcus vannielii SB]
          Length = 776

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K R+K      + +  IGP+    LL S  TV+ I  +S + L ++EGI K  A KI  
Sbjct: 703 KERQKFLV---EGLPDIGPVMAENLLNSLQTVEKIFGASEKELTAVEGIGKITAKKIRE 758


>gi|260769097|ref|ZP_05878031.1| DNA ligase [Vibrio furnissii CIP 102972]
 gi|260617127|gb|EEX42312.1| DNA ligase [Vibrio furnissii CIP 102972]
          Length = 669

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G      L   F T+  I  ++ E L  +  +   +A  ++  F +  + 
Sbjct: 520 VGEATAMNLAHHFLTLDAIREATIEQLIEVPDVGTIVASHVHAFFTQERNQ 570


>gi|309800209|ref|ZP_07694391.1| competence protein CelA [Streptococcus infantis SK1302]
 gi|308116167|gb|EFO53661.1| competence protein CelA [Streptococcus infantis SK1302]
          Length = 213

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KA+   L ++ G+G  R + ++    +       S + L  + GI  K   K+  +
Sbjct: 156 KASLEELKQVKGLGAKRAQDIIDHRDSNGKFK--SVDELKKVSGIGAKTLEKLKEY 209



 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++++S E L  ++G+  K A  I +H
Sbjct: 153 NLNKASLEELKQVKGLGAKRAQDIIDH 179


>gi|90408119|ref|ZP_01216289.1| DNA ligase [Psychromonas sp. CNPT3]
 gi|90310805|gb|EAS38920.1| DNA ligase [Psychromonas sp. CNPT3]
          Length = 667

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +  KK   S       I  +G      L   +  +  +  +  E L  +  +   +A  I
Sbjct: 498 QVSKKTTLSRFLYALGIREVGEATANNLAMHYKNLSALQDAGIEALKEVADVGDIVAKNI 557

Query: 604 YNHFHKNTS 612
           Y  F + ++
Sbjct: 558 YYFFRQPSN 566


>gi|302878427|ref|YP_003846991.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
 gi|302581216|gb|ADL55227.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
          Length = 674

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           RK      L    I  +G    R L Q FG +  I ++  E L  +  +   +A  + + 
Sbjct: 508 RKTTLARFLFALGIRNVGETTARDLAQHFGALDAIMQADAERLQQVRDVGPVVAQSMVDF 567

Query: 607 FHK 609
           F +
Sbjct: 568 FAE 570


>gi|42521704|ref|NP_967084.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
 gi|81618744|sp|Q6MRL9|DNLJ_BDEBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39574234|emb|CAE77738.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
          Length = 684

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +G    + L   F T+     +S E L  +  I  K+A  I + 
Sbjct: 540 VGEQTGKHLADHFLTIDKFLEASEEELLQVPEIGAKVAKSIRDW 583


>gi|256847966|ref|ZP_05553410.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715026|gb|EEU30003.1| Holliday junction DNA helicase RuvA [Lactobacillus coleohominis
           101-4-CHN]
          Length = 200

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 514 KGEALVLNMRDPILYFIQRLRDEAHRFAIT---THRKRRKKAAYSPLDEINGIGPLRKRL 570
              +  LN     +Y  Q +RD+    AI+    H    +K  ++ L  ++GIGP     
Sbjct: 32  NPYSYPLNEDATKIYVYQAVRDD----AISLFGFH-NAEEKRLFTKLLAVSGIGPKSALA 86

Query: 571 LL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +L      G V+ I+ ++   +    GI KK A +I
Sbjct: 87  ILANPDHEGLVEAIANNNVSYITKFPGIGKKTASRI 122


>gi|124027840|ref|YP_001013160.1| DNA repair and recombination protein RadA [Hyperthermus butylicus
           DSM 5456]
 gi|123978534|gb|ABM80815.1| DNA repair and recombination protein [Hyperthermus butylicus DSM
           5456]
          Length = 323

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K+   S   ++ G+GP     L+++ + T++ I+ ++P+ L++  GI    A +I   
Sbjct: 3   KQEIKSI-TDLPGVGPATANKLIEAGYATIEAIAVATPQELSAAAGIPLTAAQRIIKA 59


>gi|302537077|ref|ZP_07289419.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
 gi|302445972|gb|EFL17788.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
          Length = 736

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+    L + F ++  I +++ E L + EG+   IA  +   F
Sbjct: 560 SIRHVGPVAAEALAREFRSIDRIEQATEEELTATEGVGAIIAASLKEWF 608


>gi|332852097|ref|ZP_08433924.1| DNA ligase [Acinetobacter baumannii 6013150]
 gi|332867495|ref|ZP_08437648.1| DNA ligase [Acinetobacter baumannii 6013113]
 gi|332872654|ref|ZP_08440622.1| DNA ligase [Acinetobacter baumannii 6014059]
 gi|332729469|gb|EGJ60808.1| DNA ligase [Acinetobacter baumannii 6013150]
 gi|332733912|gb|EGJ65057.1| DNA ligase [Acinetobacter baumannii 6013113]
 gi|332739183|gb|EGJ70042.1| DNA ligase [Acinetobacter baumannii 6014059]
          Length = 683

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  ++ E L     +    A  I + F
Sbjct: 526 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 574


>gi|260555699|ref|ZP_05827919.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
 gi|260410610|gb|EEX03908.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
          Length = 691

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  ++ E L     +    A  I + F
Sbjct: 534 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 582


>gi|254781232|sp|B0VU02|DNLJ_ACIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 678

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  ++ E L     +    A  I + F
Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 569


>gi|239501241|ref|ZP_04660551.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB900]
          Length = 678

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  ++ E L     +    A  I + F
Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 569


>gi|229119547|ref|ZP_04248834.1| hypothetical protein bcere0017_57680 [Bacillus cereus Rock1-3]
 gi|228663894|gb|EEL19448.1| hypothetical protein bcere0017_57680 [Bacillus cereus Rock1-3]
          Length = 239

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 20/102 (19%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G+Y + D    ++YVGKA++++ R+ ++ +S ++   I   +   N + + +  +     
Sbjct: 48  GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS----- 99

Query: 71  LLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
           LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 100 LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYNQYIKQTNK 139


>gi|213156587|ref|YP_002318248.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
 gi|215484469|ref|YP_002326704.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
 gi|301347734|ref|ZP_07228475.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB056]
 gi|301512482|ref|ZP_07237719.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB058]
 gi|301594386|ref|ZP_07239394.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB059]
 gi|221222446|sp|A3M2U3|DNLJ_ACIBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254778154|sp|B7GZ71|DNLJ_ACIB3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254778155|sp|B7I790|DNLJ_ACIB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781253|sp|B0V8E4|DNLJ_ACIBY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193076578|gb|ABO11237.2| DNA ligase [Acinetobacter baumannii ATCC 17978]
 gi|213055747|gb|ACJ40649.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
 gi|213986610|gb|ACJ56909.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
          Length = 678

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  ++ E L     +    A  I + F
Sbjct: 521 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 569


>gi|184157078|ref|YP_001845417.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
 gi|254778156|sp|B2HUJ5|DNLJ_ACIBC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183208672|gb|ACC56070.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
          Length = 673

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  ++ E L     +    A  I + F
Sbjct: 516 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 564


>gi|169634132|ref|YP_001707868.1| DNA ligase [Acinetobacter baumannii SDF]
 gi|169152924|emb|CAP01965.1| DNA ligase [Acinetobacter baumannii]
          Length = 691

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  ++ E L     +    A  I + F
Sbjct: 534 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 582


>gi|169797009|ref|YP_001714802.1| DNA ligase [Acinetobacter baumannii AYE]
 gi|169149936|emb|CAM87830.1| DNA ligase [Acinetobacter baumannii AYE]
          Length = 691

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  ++ E L     +    A  I + F
Sbjct: 534 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 582


>gi|126640855|ref|YP_001083839.1| DNA ligase [Acinetobacter baumannii ATCC 17978]
 gi|322506977|gb|ADX02431.1| DNA ligase [Acinetobacter baumannii 1656-2]
 gi|323516844|gb|ADX91225.1| DNA ligase, NAD-dependent [Acinetobacter baumannii TCDC-AB0715]
          Length = 669

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  ++ E L     +    A  I + F
Sbjct: 512 GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFF 560


>gi|163802586|ref|ZP_02196478.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
 gi|159173669|gb|EDP58488.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
          Length = 670

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F  +  I +++ E L  ++ I   +A  I   F +  +  
Sbjct: 521 VGEATAANLAQYFKNLDAIQQATEEQLVDVQDIGVVVAKHITTFFSEEKNQA 572


>gi|331703733|ref|YP_004400420.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802288|emb|CBW54442.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 668

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L + +  +  + ++S + L  I  I + +A  I + F    +
Sbjct: 513 GIRHIGSKTAKILARKYQNIDNLMKASYDELIQINSIGESLALSIIDWFRIEDN 566


>gi|170718864|ref|YP_001784038.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 2336]
 gi|254781341|sp|B0USD9|DNLJ_HAES2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168826993|gb|ACA32364.1| DNA ligase, NAD-dependent [Haemophilus somnus 2336]
          Length = 667

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            KA  + L        I  +G      L   F T++    ++ E L  ++ + + +A +I
Sbjct: 500 AKAKKTTLARFIFALGIREVGETTALNLATHFKTLEAFENATFEQLQKVQDVGEVVAKRI 559

Query: 604 YNH 606
            + 
Sbjct: 560 RSF 562


>gi|222099460|ref|YP_002534028.1| DNA integrity scanning protein disA [Thermotoga neapolitana DSM
           4359]
 gi|254777855|sp|B9K6S9|DISA_THENN RecName: Full=DNA integrity scanning protein disA
 gi|221571850|gb|ACM22662.1| DNA integrity scanning protein disA [Thermotoga neapolitana DSM
           4359]
          Length = 352

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 21/78 (26%)

Query: 555 SPLDEINGIGPLRKRLLLQS---------------FGTVKMISRSSPETLASIEGISKKI 599
           S LD+I  +   R   LL++               F T+  IS++S E L  +EGI +K 
Sbjct: 277 SQLDDI--LVSARGYRLLKTAARIPISIGYNVVKMFKTLDQISKASVEDLKKVEGIGEKR 334

Query: 600 ACKIYNHF----HKNTSH 613
           A  I        H+ TS 
Sbjct: 335 AKAISESISSLKHRRTSE 352


>gi|192361192|ref|YP_001982383.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
 gi|254781281|sp|B3PGQ8|DNLJ_CELJU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190687357|gb|ACE85035.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
          Length = 680

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           IG    R L   FG+++ ++ +  ETL  +  +    A  +   F + ++
Sbjct: 526 IGEATARNLANHFGSLEKLAEADEETLVQVNDVGPVGAHFVAEFFAQESN 575


>gi|222480840|ref|YP_002567077.1| Ribosomal protein L32e [Halorubrum lacusprofundi ATCC 49239]
 gi|222453742|gb|ACM58007.1| Ribosomal protein L32e [Halorubrum lacusprofundi ATCC 49239]
          Length = 236

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L++I+G+GP +   L  + + TV+ +  +S   L+ ++G+   +A +I  
Sbjct: 4   ELEDISGVGPSKADPLRAAGYETVEDVKAASQSELSQVDGVGNALAARIKA 54


>gi|82523924|emb|CAI78646.1| NAD-dependent DNA ligase [uncultured delta proteobacterium]
          Length = 670

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +LL   FG+++ +  +  E L  I  I  +I+  I   FH+  +  
Sbjct: 519 GIRHVGERTAKLLAGYFGSIENLIAAKSEDLTVINEIGPEISASIVEFFHEPKNKA 574


>gi|291533536|emb|CBL06649.1| Putative ATPase (DUF699) [Megamonas hypermegale ART12/1]
          Length = 438

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           INGIGP   + ++  FG  T+++I++ SP  L  + GI KK A KI
Sbjct: 90  INGIGPAMAKKIVAEFGEKTLEIIAK-SPNKLLKVPGIGKKTAEKI 134


>gi|229917963|ref|YP_002886609.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
 gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
          Length = 664

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G     L+ + F T+  I  ++ E L SI+GI  K+A  I  +F K  +
Sbjct: 511 VGQKAASLIAERFETMDAIIAATVEELTSIDGIGTKMAESIVLYFEKPEA 560


>gi|269955204|ref|YP_003324993.1| hypothetical protein Xcel_0396 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303885|gb|ACZ29435.1| protein of unknown function DUF147 [Xylanimonas cellulosilytica DSM
           15894]
          Length = 361

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG ++ +  +S + L +++G+ ++ A  +    
Sbjct: 311 RLVAHFGGLQKLLAASVDDLMAVDGVGEQRARAVREGL 348


>gi|195122302|ref|XP_002005651.1| GI20584 [Drosophila mojavensis]
 gi|193910719|gb|EDW09586.1| GI20584 [Drosophila mojavensis]
          Length = 254

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LLQ FG ++ +  +S E L+ + G+  + A K+Y   H+
Sbjct: 196 ALTNIKPVNKTDAVTLLQIFGNLENLINASEERLSQVMGLGPRKAKKLYKTLHE 249


>gi|170016835|ref|YP_001727754.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
 gi|254781358|sp|B1MXQ8|DNLJ_LEUCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169803692|gb|ACA82310.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
          Length = 681

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +G    RL+ + F T++ I+ +S   +ASI GI + IA  +  +F 
Sbjct: 526 VGAKAARLIAEKFKTLQAIADASVIDIASIAGIGETIALSVVQYFK 571


>gi|113460523|ref|YP_718587.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 129PT]
 gi|122945214|sp|Q0I2H6|DNLJ_HAES1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|112822566|gb|ABI24655.1| DNA ligase (NAD+) [Haemophilus somnus 129PT]
          Length = 673

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            KA  + L        I  +G      L   F T++    ++ E L  ++ + + +A +I
Sbjct: 506 AKAKKTTLARFIFALGIREVGETTALNLATHFKTLEAFENATFEQLQKVQDVGEVVAKRI 565

Query: 604 YNH 606
            + 
Sbjct: 566 RSF 568


>gi|225013055|ref|ZP_03703470.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A]
 gi|225002783|gb|EEG40764.1| DNA ligase, NAD-dependent [Flavobacteria bacterium MS024-2A]
          Length = 487

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + F ++  ++ ++ E L + E I  +IA  + ++F
Sbjct: 335 VGETVAKQLAREFKSIDRLALATLEELTNTEEIGDRIAQSVLDYF 379


>gi|167039197|ref|YP_001662182.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X514]
 gi|256752857|ref|ZP_05493696.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913208|ref|ZP_07130525.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
 gi|307723778|ref|YP_003903529.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X513]
 gi|254781440|sp|B0K3S1|DNLJ_THEPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166853437|gb|ABY91846.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X514]
 gi|256748259|gb|EEU61324.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889893|gb|EFK85038.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
 gi|307580839|gb|ADN54238.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X513]
          Length = 662

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           IG    +++ + F T+  I ++  E    +  I  K+A  I + F +  +
Sbjct: 511 IGSKAAQVIAEHFKTMDNIMKAKFEDFTQLPDIGPKMARSIVSFFAEKQN 560


>gi|327475239|gb|AEA77214.1| DNA ligase [Bacillus sp. 15.4]
          Length = 668

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + L Q FG +  +  +S + L +I  I  K+A  +  +F K  +
Sbjct: 511 GIRHVGAKAAKTLAQEFGDIDTLMNASKDDLTAINEIGDKMADAVVAYFEKEEA 564


>gi|261854791|ref|YP_003262074.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
 gi|261835260|gb|ACX95027.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
          Length = 685

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 20/47 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G +    L   F  +  ++ ++ E L ++  +   +A  ++    +
Sbjct: 535 VGEVTAAGLAAHFRNLDALNAATLEDLQAVPDVGPVVAQHVFTFLRQ 581


>gi|312867154|ref|ZP_07727364.1| comEA protein [Streptococcus parasanguinis F0405]
 gi|311097283|gb|EFQ55517.1| comEA protein [Streptococcus parasanguinis F0405]
          Length = 222

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           +A  S L  ++GIG  R + ++           +     S + L ++ GI +K   K+ +
Sbjct: 165 RATESDLQTVSGIGQKRAQDIIAY-------REANGPFRSVDDLKNVSGIGEKTLEKLRD 217

Query: 606 HF 607
            F
Sbjct: 218 AF 219


>gi|328883258|emb|CCA56497.1| DNA integrity scanning protein disA [Streptomyces venezuelae ATCC
           10712]
          Length = 352

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 300 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 339


>gi|307266289|ref|ZP_07547829.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918667|gb|EFN48901.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 662

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           IG    +++ + F T+  I ++  E    +  I  K+A  I + F +  +
Sbjct: 511 IGSKAAQVIAEHFKTMDNIMKAKFEDFTQLPDIGPKMARSIVSFFAEKQN 560


>gi|302535146|ref|ZP_07287488.1| DNA-binding protein [Streptomyces sp. C]
 gi|302444041|gb|EFL15857.1| DNA-binding protein [Streptomyces sp. C]
          Length = 374

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|282866879|ref|ZP_06275913.1| protein of unknown function DUF147 [Streptomyces sp. ACTE]
 gi|282558278|gb|EFB63846.1| protein of unknown function DUF147 [Streptomyces sp. ACTE]
          Length = 352

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 300 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 339


>gi|239942184|ref|ZP_04694121.1| DNA integrity scanning protein DisA [Streptomyces roseosporus NRRL
           15998]
 gi|239988650|ref|ZP_04709314.1| DNA integrity scanning protein DisA [Streptomyces roseosporus NRRL
           11379]
 gi|291445638|ref|ZP_06585028.1| DNA integrity scanning protein disA [Streptomyces roseosporus NRRL
           15998]
 gi|291348585|gb|EFE75489.1| DNA integrity scanning protein disA [Streptomyces roseosporus NRRL
           15998]
          Length = 374

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|254386483|ref|ZP_05001786.1| DNA-binding protein [Streptomyces sp. Mg1]
 gi|194345331|gb|EDX26297.1| DNA-binding protein [Streptomyces sp. Mg1]
          Length = 374

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|182437921|ref|YP_001825640.1| DNA integrity scanning protein DisA [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326778557|ref|ZP_08237822.1| DNA integrity scanning protein disA [Streptomyces cf. griseus
           XylebKG-1]
 gi|226729443|sp|B1VSK3|DISA_STRGG RecName: Full=DNA integrity scanning protein disA
 gi|178466437|dbj|BAG20957.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326658890|gb|EGE43736.1| DNA integrity scanning protein disA [Streptomyces cf. griseus
           XylebKG-1]
          Length = 374

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 322 IERLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|332284990|ref|YP_004416901.1| DNA ligase [Pusillimonas sp. T7-7]
 gi|330428943|gb|AEC20277.1| DNA ligase [Pusillimonas sp. T7-7]
          Length = 698

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R L + FG+V  +  +    L  +  + + +A  I N F +
Sbjct: 544 GIRHVGEATARDLARHFGSVDAVMAADETALLQVHDVGQVVAASILNFFAE 594


>gi|182420286|ref|ZP_02951515.1| helicase, RecD/TraA family [Clostridium butyricum 5521]
 gi|237666716|ref|ZP_04526701.1| helicase, RecD/TraA family [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375881|gb|EDT73473.1| helicase, RecD/TraA family [Clostridium butyricum 5521]
 gi|237657915|gb|EEP55470.1| helicase, RecD/TraA family [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 765

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 16/66 (24%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN------------ 605
           I+GIGP+  + ++  FG  T+  I  +S E L  IEGI +K    IY             
Sbjct: 88  IHGIGPVTAKKIIAKFGEETLD-IMENSIERLMEIEGIGEKKFQIIYESYIEQQGLKDII 146

Query: 606 -HFHKN 610
            +FHK+
Sbjct: 147 LYFHKH 152


>gi|119719413|ref|YP_919908.1| DEAD/DEAH box helicase domain-containing protein [Thermofilum
           pendens Hrk 5]
 gi|119524533|gb|ABL77905.1| DEAD/DEAH box helicase domain protein [Thermofilum pendens Hrk 5]
          Length = 739

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 562 GIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           GIG +R R L +  + ++  +  +    L  I GI   +A  I    
Sbjct: 665 GIGRVRARRLYEHGYKSLVDLILADERDLTRIPGIGPNLARSIKRQL 711


>gi|331266582|ref|YP_004326212.1| competence protein CelA [Streptococcus oralis Uo5]
 gi|326683254|emb|CBZ00872.1| competence protein CelA [Streptococcus oralis Uo5]
          Length = 216

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|322376449|ref|ZP_08050942.1| competence protein CelA [Streptococcus sp. M334]
 gi|321282256|gb|EFX59263.1| competence protein CelA [Streptococcus sp. M334]
          Length = 216

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|322374509|ref|ZP_08049023.1| competence protein CelA [Streptococcus sp. C300]
 gi|321280009|gb|EFX57048.1| competence protein CelA [Streptococcus sp. C300]
          Length = 217

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 160 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 212

Query: 606 H 606
           +
Sbjct: 213 Y 213


>gi|315612963|ref|ZP_07887874.1| competence protein ComEA [Streptococcus sanguinis ATCC 49296]
 gi|315315073|gb|EFU63114.1| competence protein ComEA [Streptococcus sanguinis ATCC 49296]
          Length = 216

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|307706453|ref|ZP_07643262.1| comE operon protein 1 [Streptococcus mitis SK321]
 gi|307618163|gb|EFN97321.1| comE operon protein 1 [Streptococcus mitis SK321]
          Length = 216

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|307708589|ref|ZP_07645053.1| ComE operon protein 1 [Streptococcus mitis NCTC 12261]
 gi|307615338|gb|EFN94547.1| ComE operon protein 1 [Streptococcus mitis NCTC 12261]
          Length = 216

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|306829309|ref|ZP_07462499.1| competence protein CelA [Streptococcus mitis ATCC 6249]
 gi|304428395|gb|EFM31485.1| competence protein CelA [Streptococcus mitis ATCC 6249]
          Length = 217

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 160 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 212

Query: 606 H 606
           +
Sbjct: 213 Y 213


>gi|291521797|emb|CBK80090.1| helicase, putative, RecD/TraA family [Coprococcus catus GD/7]
          Length = 740

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           I G+GP     +++ F   + ++I    PE LA I+GIS++ A +IY  FH+   
Sbjct: 88  IRGVGPSLAARIVKKFKKDSFRIIEE-EPERLAEIKGISERKAREIYQQFHEKQD 141


>gi|293365202|ref|ZP_06611919.1| competence protein CelA [Streptococcus oralis ATCC 35037]
 gi|307703740|ref|ZP_07640681.1| comE operon protein 1 [Streptococcus oralis ATCC 35037]
 gi|291316652|gb|EFE57088.1| competence protein CelA [Streptococcus oralis ATCC 35037]
 gi|307622575|gb|EFO01571.1| comE operon protein 1 [Streptococcus oralis ATCC 35037]
          Length = 216

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|289167798|ref|YP_003446067.1| competence protein CelA [Streptococcus mitis B6]
 gi|288907365|emb|CBJ22202.1| competence protein CelA [Streptococcus mitis B6]
          Length = 209

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 152 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 204

Query: 606 H 606
           +
Sbjct: 205 Y 205


>gi|270292942|ref|ZP_06199153.1| competence protein CelA [Streptococcus sp. M143]
 gi|270278921|gb|EFA24767.1| competence protein CelA [Streptococcus sp. M143]
          Length = 216

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|225856613|ref|YP_002738124.1| competence protein CelA [Streptococcus pneumoniae P1031]
 gi|225724609|gb|ACO20461.1| competence protein CelA [Streptococcus pneumoniae P1031]
 gi|301794093|emb|CBW36499.1| putative competence protein [Streptococcus pneumoniae INV104]
 gi|332204956|gb|EGJ19021.1| comEA family protein [Streptococcus pneumoniae GA47901]
          Length = 216

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|168491043|ref|ZP_02715186.1| competence protein [Streptococcus pneumoniae CDC0288-04]
 gi|183574781|gb|EDT95309.1| competence protein [Streptococcus pneumoniae CDC0288-04]
          Length = 216

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|148984696|ref|ZP_01817964.1| competence protein CelA [Streptococcus pneumoniae SP3-BS71]
 gi|147923087|gb|EDK74202.1| competence protein CelA [Streptococcus pneumoniae SP3-BS71]
 gi|301799931|emb|CBW32514.1| putative competence protein [Streptococcus pneumoniae OXC141]
          Length = 216

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|91204173|emb|CAJ71826.1| strongly similar to DNA ligase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 674

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R R        L  I+ +G     +L + F ++  +  ++ + L  I  I   +A
Sbjct: 504 AIENSRGRDLDRLICAL-GIHNVGLHTAEVLSEHFDSLGKLLNATADELKKIHEIGPVVA 562

Query: 601 CKIYNHFHK 609
             I   F  
Sbjct: 563 QSIVEFFQN 571


>gi|167038089|ref|YP_001665667.1| NAD-dependent DNA ligase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116496|ref|YP_004186655.1| NAD-dependent DNA ligase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|254781439|sp|B0KBN6|DNLJ_THEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166856923|gb|ABY95331.1| DNA ligase, NAD-dependent [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929587|gb|ADV80272.1| DNA ligase, NAD-dependent [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 662

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           IG    +++ + F T+  I ++  E    +  I  K+A  I + F +  +
Sbjct: 511 IGSKAAQVIAEHFKTMDNIMKAKFEDFTQLPDIGPKMARSIVSFFAEKQN 560


>gi|257878122|ref|ZP_05657775.1| competence protein ComEA [Enterococcus faecium 1,230,933]
 gi|257881092|ref|ZP_05660745.1| competence protein ComEA [Enterococcus faecium 1,231,502]
 gi|257889678|ref|ZP_05669331.1| competence protein ComEA [Enterococcus faecium 1,231,410]
 gi|257892384|ref|ZP_05672037.1| competence protein ComEA [Enterococcus faecium 1,231,408]
 gi|260559171|ref|ZP_05831357.1| competence protein ComEA [Enterococcus faecium C68]
 gi|257812350|gb|EEV41108.1| competence protein ComEA [Enterococcus faecium 1,230,933]
 gi|257816750|gb|EEV44078.1| competence protein ComEA [Enterococcus faecium 1,231,502]
 gi|257826038|gb|EEV52664.1| competence protein ComEA [Enterococcus faecium 1,231,410]
 gi|257828763|gb|EEV55370.1| competence protein ComEA [Enterococcus faecium 1,231,408]
 gi|260074928|gb|EEW63244.1| competence protein ComEA [Enterococcus faecium C68]
          Length = 225

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  S L +I GIG ++ + +++ F    G+ + +     E L  I GI +K   K+ N 
Sbjct: 169 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 221


>gi|241698610|ref|XP_002413128.1| excision repair cross-complementing 1 ercc1, putative [Ixodes
           scapularis]
 gi|215506942|gb|EEC16436.1| excision repair cross-complementing 1 ercc1, putative [Ixodes
           scapularis]
          Length = 111

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL SFGT++ IS++S E L+   G+  + A ++Y+  H+
Sbjct: 63  LLTSFGTLEKISKASKEELSFHPGMGMQKASRLYDVLHQ 101


>gi|292491548|ref|YP_003526987.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
 gi|291580143|gb|ADE14600.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
          Length = 675

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L + F +++ +  +S E L  +  I   +A  I   F +
Sbjct: 522 VGEATAQALAEEFNSLEALEGASEERLQEVTDIGPVVATHIAAFFRQ 568


>gi|257884754|ref|ZP_05664407.1| competence protein ComEA [Enterococcus faecium 1,231,501]
 gi|257820592|gb|EEV47740.1| competence protein ComEA [Enterococcus faecium 1,231,501]
          Length = 225

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  S L +I GIG ++ + +++ F    G+ + +     E L  I GI +K   K+ N 
Sbjct: 169 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 221


>gi|152973931|ref|YP_001373448.1| DNA integrity scanning protein DisA [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022683|gb|ABS20453.1| protein of unknown function DUF147 [Bacillus cytotoxicus NVH
           391-98]
          Length = 357

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R+S + L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRASIDELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|241896133|ref|ZP_04783429.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
 gi|241870647|gb|EER74398.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
          Length = 675

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    + +   FG +K I+ ++ + +A + G+   I   +  +F
Sbjct: 519 GIRNVGAKAAKTIATKFGNLKAIAEATADDIAKLPGMGLTIGDSVAQYF 567


>gi|219851698|ref|YP_002466130.1| Hef nuclease [Methanosphaerula palustris E1-9c]
 gi|219545957|gb|ACL16407.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 754

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 544 THRKRRKKAAYSPLDE-------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
            HR    K+  S  ++          IG    RLLL   G+V+ +  ++ E L+SI GI 
Sbjct: 682 HHR----KSFKSVKEQQEYVVAAFPDIGLKNARLLLDYCGSVRAVINANEEVLSSIRGIG 737

Query: 597 KKIACKIYN 605
           +K A +I  
Sbjct: 738 EKTAQRIVE 746


>gi|126329589|ref|XP_001365997.1| PREDICTED: similar to DNA excision repair protein ERCC-1
           [Monodelphis domestica]
          Length = 326

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ ++ +S E L+   G   + A ++++  H+
Sbjct: 279 QTLLATFGSLEQLTAASQEDLSLCPGFGPQKARRLFDVLHQ 319


>gi|39938924|ref|NP_950690.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M]
 gi|81402396|sp|Q6YQD6|DNLJ_ONYPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|39722033|dbj|BAD04523.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M]
          Length = 671

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG    ++L + F T++ + +++PE +  I  I  KIA  I  +F  +
Sbjct: 512 GIKHIGKKVSQVLAKHFQTIENLQQATPELITQIREIGIKIAQSIQQYFSNS 563


>gi|319937197|ref|ZP_08011604.1| DNA ligase [Coprobacillus sp. 29_1]
 gi|319807563|gb|EFW04156.1| DNA ligase [Coprobacillus sp. 29_1]
          Length = 662

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I GIG      L + F ++  +  +S   L SI+ + + I   I NHF  + + 
Sbjct: 508 GIKGIGAKMADNLSKEFKSIDAMLEASTAKLLSIKDVGETIVQSI-NHFRNDPAS 561


>gi|301801791|emb|CBW34502.1| putative competence protein [Streptococcus pneumoniae INV200]
          Length = 212

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KA+   L ++ G+G  R + ++    +       S + L  + GI  K   K+ ++
Sbjct: 155 KASLEELKQVKGLGGKRAQDIIDHRESNGKFK--SVDELKKVSGIGAKTIEKLKDY 208


>gi|254451805|ref|ZP_05065242.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238]
 gi|198266211|gb|EDY90481.1| helicase, RecD/TraA family [Octadecabacter antarcticus 238]
          Length = 675

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603
           I GIGP+  + L++ FG  V  I  ++PE L  +EGI  K A KI
Sbjct: 37  IRGIGPVYAKRLVKMFGKDVFDIIEATPERLREVEGIGPKRADKI 81


>gi|145220287|ref|YP_001130996.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265]
 gi|190359271|sp|A4SG85|DNLJ_PROVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145206451|gb|ABP37494.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265]
          Length = 674

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R L ++  +++++  +S E L+ +  I   IA  I + F
Sbjct: 523 GIRHVGRATARELAKACSSIEVLKEASFEELSEVPDIGPVIARSIRDWF 571


>gi|282163483|ref|YP_003355868.1| putative DNA mismatch repair protein [Methanocella paludicola
           SANAE]
 gi|282155797|dbj|BAI60885.1| putative DNA mismatch repair protein [Methanocella paludicola
           SANAE]
          Length = 705

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 557 LDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIA-CKIYNHFHKNT 611
           L E+ GIG      L+  FG+    ++++ R    +L+++ GIS+K A   I+    +  
Sbjct: 6   LIELPGIGEKISNKLIDHFGSERAALEVLRRHDVASLSAVPGISEKYAVSLIHEVIAQEE 65

Query: 612 SHT 614
             +
Sbjct: 66  GAS 68


>gi|229548668|ref|ZP_04437393.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
 gi|257420983|ref|ZP_05597973.1| DNA ligase [Enterococcus faecalis X98]
 gi|312953107|ref|ZP_07771956.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
 gi|229306184|gb|EEN72180.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
 gi|257162807|gb|EEU92767.1| DNA ligase [Enterococcus faecalis X98]
 gi|310628941|gb|EFQ12224.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
 gi|315153982|gb|EFT97998.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0031]
 gi|315156746|gb|EFU00763.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0043]
          Length = 676

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIANSVVTYFENEE 568


>gi|293552878|ref|ZP_06673536.1| competence protein comEA [Enterococcus faecium E1039]
 gi|291603012|gb|EFF33206.1| competence protein comEA [Enterococcus faecium E1039]
          Length = 238

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  S L +I GIG ++ + +++ F    G+ + +     E L  I GI +K   K+ N 
Sbjct: 182 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 234


>gi|148998610|ref|ZP_01826050.1| competence protein CelA [Streptococcus pneumoniae SP11-BS70]
 gi|168575617|ref|ZP_02721553.1| competence protein [Streptococcus pneumoniae MLV-016]
 gi|307067612|ref|YP_003876578.1| DNA uptake protein-like DNA-binding protein [Streptococcus
           pneumoniae AP200]
 gi|147755608|gb|EDK62655.1| competence protein CelA [Streptococcus pneumoniae SP11-BS70]
 gi|183578591|gb|EDT99119.1| competence protein [Streptococcus pneumoniae MLV-016]
 gi|306409149|gb|ADM84576.1| DNA uptake protein-like DNA-binding protein [Streptococcus
           pneumoniae AP200]
 gi|332202810|gb|EGJ16879.1| comEA family protein [Streptococcus pneumoniae GA41317]
          Length = 216

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSIDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|119961905|ref|YP_946007.1| DNA integrity scanning protein DisA [Arthrobacter aurescens TC1]
 gi|119948764|gb|ABM07675.1| putative DNA-binding protein [Arthrobacter aurescens TC1]
          Length = 358

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R     S L  +          L+  FG ++ +  ++ + L +++GI  + A  +    
Sbjct: 290 RGYRLLSGLKSVP---KAVADRLVDYFGGLQNLMAATIDDLMTVDGIGDQRARTVREGL 345


>gi|326512966|dbj|BAK03390.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 388

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I  +S E LA   GI ++   ++++ FH+
Sbjct: 262 FGSLSRIMDASMEELARCPGIGERKVKRLHDTFHE 296


>gi|293569405|ref|ZP_06680702.1| putative competence protein comEA [Enterococcus faecium E1071]
 gi|291587931|gb|EFF19782.1| putative competence protein comEA [Enterococcus faecium E1071]
          Length = 238

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  S L +I GIG ++ + +++ F    G+ + +     E L  I GI +K   K+ N 
Sbjct: 182 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 234


>gi|229817979|ref|ZP_04448261.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM
           20098]
 gi|229784583|gb|EEP20697.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM
           20098]
          Length = 927

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  + G++  IS++S + L  I+G+  +IA  + + F
Sbjct: 754 LGPPTARLIASAMGSLDAISKASVDDLTQIDGVGPEIAESVVHWF 798


>gi|254458423|ref|ZP_05071848.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1]
 gi|207084731|gb|EDZ62018.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1]
          Length = 475

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 16/82 (19%)

Query: 533 LRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMI-----SRSSPE 587
           ++DEA         K  K+     L  ++G+G  +   +++ FG V  +       +S  
Sbjct: 402 VQDEA---------KITKEELSDFLTSVDGVGAKKVEKIVKHFGNVDEVVGVLHQNTSI- 451

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            L  ++GI+KK+A KI   + K
Sbjct: 452 -LTEVKGITKKLASKIEKAWKK 472


>gi|222151487|ref|YP_002560643.1| hypothetical protein MCCL_1240 [Macrococcus caseolyticus JCSC5402]
 gi|222120612|dbj|BAH17947.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 220

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 554 YSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            S L+EI GIGP + + +++        K I     E +  I G+  KI   + ++ 
Sbjct: 167 QSELEEIPGIGPKKAQDIIKYRTDNKGFKAI-----EEIKEIRGVGDKIYEGLKDYI 218


>gi|94499335|ref|ZP_01305873.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
 gi|94428967|gb|EAT13939.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
          Length = 694

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L+Q F T++ + ++S + L  ++ +   +A  I N F +  + T
Sbjct: 538 VGVATANNLVQHFLTIRALVKASFDELIEVDDVGPIVAEHILNFFAEPHNQT 589


>gi|227551295|ref|ZP_03981344.1| competence protein ComEA [Enterococcus faecium TX1330]
 gi|257887588|ref|ZP_05667241.1| competence protein ComEA [Enterococcus faecium 1,141,733]
 gi|257896084|ref|ZP_05675737.1| competence protein ComEA [Enterococcus faecium Com12]
 gi|293377501|ref|ZP_06623697.1| comEA protein [Enterococcus faecium PC4.1]
 gi|227179575|gb|EEI60547.1| competence protein ComEA [Enterococcus faecium TX1330]
 gi|257823642|gb|EEV50574.1| competence protein ComEA [Enterococcus faecium 1,141,733]
 gi|257832649|gb|EEV59070.1| competence protein ComEA [Enterococcus faecium Com12]
 gi|292643870|gb|EFF61984.1| comEA protein [Enterococcus faecium PC4.1]
          Length = 225

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 555 SPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           S L +I GIG ++ + +++ F    G+ + +     E L  I GI +K   K+ N 
Sbjct: 172 SELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 221


>gi|69247259|ref|ZP_00604277.1| Competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecium DO]
 gi|314937551|ref|ZP_07844879.1| comEA protein [Enterococcus faecium TX0133a04]
 gi|314941458|ref|ZP_07848347.1| comEA protein [Enterococcus faecium TX0133C]
 gi|314949637|ref|ZP_07852958.1| comEA protein [Enterococcus faecium TX0082]
 gi|314951819|ref|ZP_07854857.1| comEA protein [Enterococcus faecium TX0133A]
 gi|314992765|ref|ZP_07858169.1| comEA protein [Enterococcus faecium TX0133B]
 gi|314996521|ref|ZP_07861559.1| comEA protein [Enterococcus faecium TX0133a01]
 gi|68194932|gb|EAN09401.1| Competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecium DO]
 gi|313589307|gb|EFR68152.1| comEA protein [Enterococcus faecium TX0133a01]
 gi|313592698|gb|EFR71543.1| comEA protein [Enterococcus faecium TX0133B]
 gi|313595993|gb|EFR74838.1| comEA protein [Enterococcus faecium TX0133A]
 gi|313599710|gb|EFR78553.1| comEA protein [Enterococcus faecium TX0133C]
 gi|313643094|gb|EFS07674.1| comEA protein [Enterococcus faecium TX0133a04]
 gi|313643976|gb|EFS08556.1| comEA protein [Enterococcus faecium TX0082]
          Length = 242

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  S L +I GIG ++ + +++ F    G+ + +     E L  I GI +K   K+ N 
Sbjct: 186 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 238


>gi|310644729|ref|YP_003949488.1| excinuclease abc c subunit domain protein [Paenibacillus polymyxa
           SC2]
 gi|309249680|gb|ADO59247.1| Excinuclease ABC C subunit domain protein [Paenibacillus polymyxa
           SC2]
          Length = 118

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G++   +    +L+VGKA  L+ RIK +   N    +      ++  I   +    V
Sbjct: 36  DKAGIFMFYNAQEELLFVGKARKLRPRIKKHFEDNVSPIKANR--KEVAIIEVCIVEDAV 93

Query: 68  EALLLEANMIKRLKPRFNI 86
           +  + E  +I   K ++N+
Sbjct: 94  DREIYETYIINSQKAKYNV 112


>gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
          Length = 876

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  +
Sbjct: 192 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 233


>gi|302348270|ref|YP_003815908.1| DNA repair and recombination protein radA [Acidilobus
           saccharovorans 345-15]
 gi|302328682|gb|ADL18877.1| DNA repair and recombination protein radA [Acidilobus
           saccharovorans 345-15]
          Length = 326

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           E+ G+GP     L++S + T++ I+ ++P+ +A   GI  + A KI +
Sbjct: 18  ELPGVGPTTAEKLVESGYATIEAIAVATPQEIAQATGIPLQTAQKIVD 65


>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 876

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  +
Sbjct: 192 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 233


>gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus]
          Length = 954

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  +
Sbjct: 268 GVPGIGKKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 309


>gi|329939492|ref|ZP_08288828.1| DNA integrity scanning protein DisA [Streptomyces griseoaurantiacus
           M045]
 gi|329301721|gb|EGG45615.1| DNA integrity scanning protein DisA [Streptomyces griseoaurantiacus
           M045]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|302559260|ref|ZP_07311602.1| DNA-binding protein [Streptomyces griseoflavus Tu4000]
 gi|302476878|gb|EFL39971.1| DNA-binding protein [Streptomyces griseoflavus Tu4000]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|302553210|ref|ZP_07305552.1| DNA integrity scanning protein disA [Streptomyces viridochromogenes
           DSM 40736]
 gi|302470828|gb|EFL33921.1| DNA integrity scanning protein disA [Streptomyces viridochromogenes
           DSM 40736]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|302521041|ref|ZP_07273383.1| DNA integrity scanning protein disA [Streptomyces sp. SPB78]
 gi|333025266|ref|ZP_08453330.1| putative DNA integrity scanning protein disA [Streptomyces sp.
           Tu6071]
 gi|302429936|gb|EFL01752.1| DNA integrity scanning protein disA [Streptomyces sp. SPB78]
 gi|332745118|gb|EGJ75559.1| putative DNA integrity scanning protein disA [Streptomyces sp.
           Tu6071]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|318062065|ref|ZP_07980786.1| DNA integrity scanning protein DisA [Streptomyces sp. SA3_actG]
 gi|318080456|ref|ZP_07987788.1| DNA integrity scanning protein DisA [Streptomyces sp. SA3_actF]
          Length = 352

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 302 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 339


>gi|295837244|ref|ZP_06824177.1| DNA-binding protein [Streptomyces sp. SPB74]
 gi|295826418|gb|EFG64835.1| DNA-binding protein [Streptomyces sp. SPB74]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|294630669|ref|ZP_06709229.1| DNA-binding protein [Streptomyces sp. e14]
 gi|292834002|gb|EFF92351.1| DNA-binding protein [Streptomyces sp. e14]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|291438054|ref|ZP_06577444.1| DNA integrity scanning protein disA [Streptomyces ghanaensis ATCC
           14672]
 gi|291340949|gb|EFE67905.1| DNA integrity scanning protein disA [Streptomyces ghanaensis ATCC
           14672]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|290958386|ref|YP_003489568.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260647912|emb|CBG71017.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 345

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 295 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 332


>gi|256787042|ref|ZP_05525473.1| DNA integrity scanning protein DisA [Streptomyces lividans TK24]
          Length = 352

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 302 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 339


>gi|239980285|ref|ZP_04702809.1| DNA integrity scanning protein DisA [Streptomyces albus J1074]
 gi|291452149|ref|ZP_06591539.1| DNA-binding protein [Streptomyces albus J1074]
 gi|291355098|gb|EFE82000.1| DNA-binding protein [Streptomyces albus J1074]
          Length = 373

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 323 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 360


>gi|239929729|ref|ZP_04686682.1| DNA integrity scanning protein DisA [Streptomyces ghanaensis ATCC
           14672]
          Length = 352

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 302 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 339


>gi|297201444|ref|ZP_06918841.1| DNA integrity scanning protein disA [Streptomyces sviceus ATCC
           29083]
 gi|197713852|gb|EDY57886.1| DNA integrity scanning protein disA [Streptomyces sviceus ATCC
           29083]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|187609352|pdb|3C1Y|A Chain A, Structure Of Bacterial Dna Damage Sensor Protein With Co-
           Purified And Co-Crystallized Ligand
 gi|187609353|pdb|3C1Y|B Chain B, Structure Of Bacterial Dna Damage Sensor Protein With Co-
           Purified And Co-Crystallized Ligand
 gi|187609354|pdb|3C1Z|A Chain A, Structure Of The Ligand-Free Form Of A Bacterial Dna
           Damage Sensor Protein
 gi|187609355|pdb|3C1Z|B Chain B, Structure Of The Ligand-Free Form Of A Bacterial Dna
           Damage Sensor Protein
 gi|187609356|pdb|3C21|A Chain A, Structure Of A Bacterial Dna Damage Sensor Protein With
           Reaction Product
 gi|187609357|pdb|3C21|B Chain B, Structure Of A Bacterial Dna Damage Sensor Protein With
           Reaction Product
 gi|187609358|pdb|3C23|A Chain A, Structure Of A Bacterial Dna Damage Sensor Protein With
           Non- Reactive Ligand
 gi|187609359|pdb|3C23|B Chain B, Structure Of A Bacterial Dna Damage Sensor Protein With
           Non- Reactive Ligand
          Length = 377

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613
           F T+  IS++S E L  +EGI +K A  I        H+ TS 
Sbjct: 335 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 377


>gi|29831252|ref|NP_825886.1| DNA integrity scanning protein DisA [Streptomyces avermitilis
           MA-4680]
 gi|81718231|sp|Q82EA6|DISA_STRAW RecName: Full=DNA integrity scanning protein disA
 gi|29608367|dbj|BAC72421.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|21221781|ref|NP_627560.1| DNA integrity scanning protein DisA [Streptomyces coelicolor A3(2)]
 gi|289770935|ref|ZP_06530313.1| DNA integrity scanning protein disA [Streptomyces lividans TK24]
 gi|81554055|sp|Q9X8L6|DISA_STRCO RecName: Full=DNA integrity scanning protein disA
 gi|4585584|emb|CAB40852.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|289701134|gb|EFD68563.1| DNA integrity scanning protein disA [Streptomyces lividans TK24]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 324 RLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGL 361


>gi|325982988|ref|YP_004295390.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
 gi|325532507|gb|ADZ27228.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
          Length = 677

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+ ++ L        I  +G    + L    G++  +  +  E L  I  +   +A  I 
Sbjct: 506 KSKHTTLARFIYALGIRNVGEATAKDLAAHCGSLDRLIEAGSERLQQIPDVGPVVAQSIA 565

Query: 605 NHFHK 609
           + F +
Sbjct: 566 DFFAE 570


>gi|206969091|ref|ZP_03230046.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|206736132|gb|EDZ53290.1| conserved hypothetical protein [Bacillus cereus AH1134]
          Length = 213

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 20/102 (19%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G+Y + D    ++YVGKA++++ R+ ++ +S ++   I   +   N + + V  +     
Sbjct: 22  GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNSYSN---IEEYVHLFNKVAYLVEDS----- 73

Query: 71  LLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
           LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|312870519|ref|ZP_07730638.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
 gi|311093981|gb|EFQ52306.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
          Length = 679

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    RL+++ F ++  +  +S + +A+++GI   I   +  +F    
Sbjct: 522 GIRHVGAKAARLIMEHFQSLDRLLTASADEVAAVDGIGPTIGDSVQTYFANEQ 574


>gi|257898720|ref|ZP_05678373.1| competence protein ComEA [Enterococcus faecium Com15]
 gi|257836632|gb|EEV61706.1| competence protein ComEA [Enterococcus faecium Com15]
          Length = 225

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 555 SPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           S L +I GIG ++ + +++ F    G+ + +     E L  I GI +K   K+ N 
Sbjct: 172 SELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 221


>gi|149446363|ref|XP_001517592.1| PREDICTED: similar to DNA excision repair protein ERCC-1, partial
           [Ornithorhynchus anatinus]
          Length = 450

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL +FG++  +  +S E L+   G   + A ++++  H+
Sbjct: 405 LLSTFGSLDQLVAASAEDLSLCPGFGPQKARRLFDTLHE 443


>gi|289644234|ref|ZP_06476323.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
 gi|289505957|gb|EFD26967.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
          Length = 713

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L +   +V  I+ +S ETLA+++G+   IA  + + F
Sbjct: 536 SIRHVGPSAARALAREMRSVDAIAAASTETLAAVDGVGPTIAASVVDWF 584


>gi|1526547|dbj|BAA13425.1| DNA polymerase family X [Thermus aquaticus]
          Length = 320

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 548 RRKKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRSSPE--TLASIEGISKKIAC 601
              K     L+  E+ G+GP   R L ++ G  +++ +  +  E   L  ++G   K A 
Sbjct: 84  LSGKVPRGVLEVMEVPGVGPKTARGLYEALGIDSLEKLKEA-LERGDLLRLKGFGAKKAE 142

Query: 602 KIYNHF 607
           +I    
Sbjct: 143 RIKEGL 148


>gi|258616376|ref|ZP_05714146.1| competence protein comEA [Enterococcus faecium DO]
 gi|293563913|ref|ZP_06678336.1| competence protein comEA [Enterococcus faecium E1162]
 gi|294623504|ref|ZP_06702352.1| competence protein comEA [Enterococcus faecium U0317]
 gi|291597098|gb|EFF28301.1| competence protein comEA [Enterococcus faecium U0317]
 gi|291604146|gb|EFF33657.1| competence protein comEA [Enterococcus faecium E1162]
          Length = 238

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  S L +I GIG ++ + +++ F    G+ + +     E L  I GI +K   K+ N 
Sbjct: 182 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 234


>gi|289566282|ref|ZP_06446713.1| competence protein ComEA [Enterococcus faecium D344SRF]
 gi|294615865|ref|ZP_06695707.1| competence protein comEA [Enterococcus faecium E1636]
 gi|294617300|ref|ZP_06696941.1| putative competence protein ComEA [Enterococcus faecium E1679]
 gi|289161922|gb|EFD09791.1| competence protein ComEA [Enterococcus faecium D344SRF]
 gi|291591251|gb|EFF22918.1| competence protein comEA [Enterococcus faecium E1636]
 gi|291596457|gb|EFF27709.1| putative competence protein ComEA [Enterococcus faecium E1679]
          Length = 238

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  S L +I GIG ++ + +++ F    G+ + +     E L  I GI +K   K+ N 
Sbjct: 182 ATPSELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 234


>gi|195436244|ref|XP_002066079.1| GK22170 [Drosophila willistoni]
 gi|194162164|gb|EDW77065.1| GK22170 [Drosophila willistoni]
          Length = 259

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LLQ+FG ++ +  +S E L+ + G+  + A K+Y    +
Sbjct: 201 ALTNIKPVNKTDAVTLLQTFGNLENLINASEERLSQVMGLGPRKAKKLYKTLQE 254


>gi|332366947|gb|EGJ44687.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1059]
          Length = 652

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  SH
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSH 556


>gi|319651430|ref|ZP_08005559.1| hypothetical protein HMPREF1013_02171 [Bacillus sp. 2_A_57_CT2]
 gi|317396961|gb|EFV77670.1| hypothetical protein HMPREF1013_02171 [Bacillus sp. 2_A_57_CT2]
          Length = 388

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603
           PL+ I G+GP     LL  FGT   I        ++ +  I +K A  I
Sbjct: 318 PLEFIPGLGPKMLEKLLNHFGTEMAILHDVPLSEISKV--IPEKTARLI 364


>gi|93005182|ref|YP_579619.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
 gi|122989955|sp|Q1QDW8|DNLJ_PSYCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|92392860|gb|ABE74135.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
          Length = 691

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+G    + L Q FG +  +  +S E L     +    A   Y  F 
Sbjct: 538 GIRGVGETTAQNLAQQFGDLDALMSASIEKLLLTPDVGAITAELTYKFFR 587


>gi|332705189|ref|ZP_08425270.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
 gi|332355932|gb|EGJ35391.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
          Length = 1092

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 28/56 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G  + + L + F  ++ +++++   +  I  I  KIA  + + F  +++ T
Sbjct: 790 GIRHVGSDKAKTLAKKFRNIEQLAQATIPDIEGIYSIGPKIAKSVRDWFQNSSNQT 845



 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 32/56 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G +  + L+Q+F T++ +++++   +  I GI  +IA  ++  F  +++ T
Sbjct: 537 GIRHVGSVNAQTLVQTFPTIEQLAQATVTDIEGIYGIGPEIAQSVWGWFQISSNQT 592



 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 32/56 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G +  + L+Q+F T++ +++++   +  I GI  +IA  ++  F  +++ T
Sbjct: 939 GIRHVGSVNAQTLVQTFPTIEQLAQATVTDIEGIYGIGPEIAQSVWGWFQISSNQT 994



 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           A+ + LD ING+G      L+   G   +V  +   + E L S++GI  K+A K+ N   
Sbjct: 718 ASRNALD-INGLGKKIIEQLVDQ-GLVTSVADLYDLTLEQLVSLKGIGYKLAQKLLNAIA 775

Query: 609 KNTSHT 614
           K+ +  
Sbjct: 776 KSKTQP 781



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 559 EINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +ING+G      L+   G   +V  +   + E L S+ GI  K+A K+ N   K+ +  
Sbjct: 873 DINGLGKKIVEQLVDQ-GLVTSVADLYNLTLEQLVSLNGIGHKLAQKLLNAIAKSKTQP 930


>gi|302782932|ref|XP_002973239.1| hypothetical protein SELMODRAFT_98787 [Selaginella moellendorffii]
 gi|300158992|gb|EFJ25613.1| hypothetical protein SELMODRAFT_98787 [Selaginella moellendorffii]
          Length = 232

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              S L  +  I       L  +FG++  +  +S E LA   GI ++   ++Y+ FH+
Sbjct: 151 RLTSALTSVRHINKTDVVTLGSTFGSMASVMSASMEDLARCPGIGERKVKRLYDAFHE 208


>gi|317495223|ref|ZP_07953593.1| DNA ligase [Gemella moribillum M424]
 gi|316914645|gb|EFV36121.1| DNA ligase [Gemella moribillum M424]
          Length = 663

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
            +  S LD+      I  +G    ++L + +  +   S+++ + L  +  I    A  I 
Sbjct: 494 NSKQSSLDKVIFALGILNVGKKAGKILAEYYKNLTNFSKATVDELLELPDIGLITAESIV 553

Query: 605 NHFHKNTS 612
           ++   + +
Sbjct: 554 DYLSNDNN 561


>gi|295399055|ref|ZP_06809037.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312110340|ref|YP_003988656.1| hypothetical protein GY4MC1_1238 [Geobacillus sp. Y4.1MC1]
 gi|294978521|gb|EFG54117.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215441|gb|ADP74045.1| hypothetical protein GY4MC1_1238 [Geobacillus sp. Y4.1MC1]
          Length = 387

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PL+ I G+G      LL  FGT + ++ +++ E L     I +K+A  I
Sbjct: 317 PLEFIPGLGAKTYEKLLARFGTEMYVLHQATEEELQE--SIGEKLANLI 363


>gi|226327976|ref|ZP_03803494.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198]
 gi|225203680|gb|EEG86034.1| hypothetical protein PROPEN_01867 [Proteus penneri ATCC 35198]
          Length = 186

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   F T++ +  +  E L  +  +   +A  + N F +  + T
Sbjct: 32  VGEATASGLTAHFSTLEALRNADVEALKLVPDVGDIVAKHVVNFFQEEHNRT 83


>gi|52548595|gb|AAU82444.1| recombinase [uncultured archaeon GZfos17F1]
          Length = 324

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
            ++E+ G+GP     L  + F +V+ I+ +SP  LA+   I +  A KI
Sbjct: 5   SIEELPGVGPATAEKLKDAGFNSVEAIAVASPSELAATAEIGESTAVKI 53


>gi|333024269|ref|ZP_08452333.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
 gi|332744121|gb|EGJ74562.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
          Length = 771

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 17/78 (21%)

Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           KK   S L+ I             G     +GP+    L + F ++  I  +    LA  
Sbjct: 558 KKNTLSMLENIEAAKQRPLAQILTGLSVRHVGPVAAAALAREFRSIDRIFAAEESELAET 617

Query: 593 EGISKKIACKIYNHFHKN 610
           EG+   IA  +   + ++
Sbjct: 618 EGVGPTIAASLKQWYEED 635


>gi|318059490|ref|ZP_07978213.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actG]
 gi|318076490|ref|ZP_07983822.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actF]
          Length = 783

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 17/78 (21%)

Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           KK   S L+ I             G     +GP+    L + F ++  I  +    LA  
Sbjct: 558 KKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAEESELAET 617

Query: 593 EGISKKIACKIYNHFHKN 610
           EG+   IA  +   + ++
Sbjct: 618 EGVGPTIAASLKQWYEED 635


>gi|258590885|emb|CBE67180.1| DNA processing chain A (DprA/Smf) [NC10 bacterium 'Dutch sediment']
          Length = 379

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 27/47 (57%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           I  +G      L ++ G+V+ + R++ E LA + GIS+++A  I + 
Sbjct: 20  IPEVGSATFYRLREALGSVEAVLRANKEALAQVPGISRQVAQAIASF 66


>gi|302522063|ref|ZP_07274405.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
 gi|302430958|gb|EFL02774.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
          Length = 783

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 17/78 (21%)

Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           KK   S L+ I             G     +GP+    L + F ++  I  +    LA  
Sbjct: 558 KKNTLSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAEESELAET 617

Query: 593 EGISKKIACKIYNHFHKN 610
           EG+   IA  +   + ++
Sbjct: 618 EGVGPTIAASLKQWYEED 635


>gi|330508608|ref|YP_004385036.1| DNA repair and recombination protein RadA [Methanosaeta concilii
           GP-6]
 gi|328929416|gb|AEB69218.1| DNA repair and recombination protein RadA [Methanosaeta concilii
           GP-6]
          Length = 325

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           L+++ G+GP     L ++ F +++ I+ +SP  L S   + +  A KI
Sbjct: 6   LEDLPGVGPATAEKLREAGFNSIEAIAVASPGELVSAAEVGEATAAKI 53


>gi|188586006|ref|YP_001917551.1| DNA protecting protein DprA [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350693|gb|ACB84963.1| DNA protecting protein DprA [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 349

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  I G+G  R + L+Q FG  + +  SS E L  + GIS  +A  I  H
Sbjct: 3   LKLIPGLGNNRIKKLIQWFGCGEEVWNSSIENLLEVSGISYDLAENIVVH 52


>gi|256831732|ref|YP_003160459.1| hypothetical protein Jden_0492 [Jonesia denitrificans DSM 20603]
 gi|256685263|gb|ACV08156.1| protein of unknown function DUF147 [Jonesia denitrificans DSM
           20603]
          Length = 362

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 21/38 (55%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+Q FG ++ +  ++ + L +++G+ ++ A  +    
Sbjct: 312 RLVQHFGGLQKLLAATIDDLMAVDGVGEQRARAVREGL 349


>gi|169335238|ref|ZP_02862431.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257976|gb|EDS71942.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
           17244]
          Length = 659

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L++      IN +G    +LL + F T+  +  +S E +  I  I  K+A +I 
Sbjct: 495 KSKENSLEDLLFALSINLVGKQGAKLLAKRFKTMDNLINASYEDIVDINEIGDKMATEII 554

Query: 605 NHFHK 609
           N F  
Sbjct: 555 NFFKN 559


>gi|331266328|ref|YP_004325958.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
 gi|326683000|emb|CBZ00617.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
          Length = 652

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LLLQ F ++K ++++ PE +ASIE +   IA  +  +F
Sbjct: 502 GIRHVGSKASQLLLQHFHSIKNLAQADPEEVASIESLGSVIAQSLQTYF 550


>gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8]
          Length = 876

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  +
Sbjct: 192 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 233


>gi|269794026|ref|YP_003313481.1| nucleic-acid-binding protein [Sanguibacter keddieii DSM 10542]
 gi|269096211|gb|ACZ20647.1| predicted nucleic-acid-binding protein (contains the HHH domain)
           [Sanguibacter keddieii DSM 10542]
          Length = 361

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG ++ +  ++ E L +++G+ ++ A  +    
Sbjct: 311 RLVSHFGGLQKLLAATVEDLMAVDGVGEQRARSVREGL 348


>gi|15642973|ref|NP_228015.1| DNA integrity scanning protein DisA [Thermotoga maritima MSB8]
 gi|81552974|sp|Q9WY43|DISA_THEMA RecName: Full=DNA integrity scanning protein disA
 gi|4980697|gb|AAD35292.1|AE001705_3 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 357

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613
           F T+  IS++S E L  +EGI +K A  I        H+ TS 
Sbjct: 315 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 357


>gi|332703906|ref|ZP_08423994.1| helicase, RecD/TraA family [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554055|gb|EGJ51099.1| helicase, RecD/TraA family [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 751

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYN 605
           +   S L  I G+GP     L+ +FGT V  I  S PE L  ++GI KK   +I  
Sbjct: 102 RYLSSGL--IKGVGPKTAEALVATFGTAVLDIIESEPERLLEVDGIGKKTLERIRE 155


>gi|197121145|ref|YP_002133096.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
 gi|254781542|sp|B4UDH6|DNLJ_ANASK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|196170994|gb|ACG71967.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
          Length = 687

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           RK      L    I  +G      L + FG +  +  +  E L  +  +  + A +I   
Sbjct: 524 RKTTLRRFLFALGIPQVGEATAATLARHFGGLARVMDADEEALKGVRDVGPETAAEIRAW 583


>gi|83319601|ref|YP_424672.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123740036|sp|Q2SRE1|DNLJ_MYCCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83283487|gb|ABC01419.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 668

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L + +  +  + ++S + L  I  I + +A  I + F    +
Sbjct: 513 GIRHIGSKTAKILARKYQNIDNLMKASYDELIQINSIGESLALSIIDWFKIEDN 566


>gi|289432459|ref|YP_003462332.1| DNA repair protein RadC [Dehalococcoides sp. GT]
 gi|288946179|gb|ADC73876.1| DNA repair protein RadC [Dehalococcoides sp. GT]
          Length = 228

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L+  FG    I+ +S E L+ ++GI    AC++   F
Sbjct: 52  QRLIAHFGGPSGIACASVEELSKLKGIGLAKACQLKAAF 90


>gi|229151316|ref|ZP_04279521.1| hypothetical protein bcere0011_28630 [Bacillus cereus m1550]
 gi|228632161|gb|EEK88785.1| hypothetical protein bcere0011_28630 [Bacillus cereus m1550]
          Length = 213

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52


>gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005]
          Length = 876

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  +
Sbjct: 192 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 233


>gi|73748411|ref|YP_307650.1| RadC family DNA repair protein [Dehalococcoides sp. CBDB1]
 gi|73660127|emb|CAI82734.1| DNA repair protein, RadC family [Dehalococcoides sp. CBDB1]
          Length = 219

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L+  FG    I+ +S E L+ ++GI    AC++   F
Sbjct: 43  QRLIAHFGGPSGIACASVEELSKLKGIGLAKACQLKAAF 81


>gi|147669191|ref|YP_001214009.1| DNA repair protein RadC [Dehalococcoides sp. BAV1]
 gi|146270139|gb|ABQ17131.1| DNA replication and repair protein RadC [Dehalococcoides sp. BAV1]
          Length = 228

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L+  FG    I+ +S E L+ ++GI    AC++   F
Sbjct: 52  QRLIAHFGGPSGIACASVEELSKLKGIGLAKACQLKAAF 90


>gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB]
          Length = 878

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  +
Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235


>gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus]
 gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  +
Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235


>gi|256383839|gb|ACU78409.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384670|gb|ACU79239.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455996|gb|ADH22231.1| DNA ligase, NAD-dependent [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 668

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L + +  +  + ++S + L  I  I + +A  I + F    +
Sbjct: 513 GIRHIGSKTAKILARKYQNIDNLMKASYDELIQINSIGESLALSIIDWFKIEDN 566


>gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  +
Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235


>gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  +
Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235


>gi|312888786|ref|ZP_07748349.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
 gi|311298661|gb|EFQ75767.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
          Length = 675

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 23/44 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +G    R L+  F  +  + +++ E L +++ I  +IA  + ++
Sbjct: 520 VGETVARKLVAYFKNIDNLMKANIEELTTVDEIGTRIAESLVDY 563


>gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus]
          Length = 878

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  +
Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235


>gi|228966071|ref|ZP_04127134.1| hypothetical protein bthur0004_28870 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228793556|gb|EEM41096.1| hypothetical protein bthur0004_28870 [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 207

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 16 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 46


>gi|39997645|ref|NP_953596.1| DNA processing protein DprA [Geobacter sulfurreducens PCA]
 gi|39984537|gb|AAR35923.1| DNA processing protein DprA [Geobacter sulfurreducens PCA]
 gi|298506585|gb|ADI85308.1| DNA uptake/processing protein SMF [Geobacter sulfurreducens KN400]
          Length = 356

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L  +  +G +  R LL  FG+ + + R+S   LAS+ G+S  +A  I  H
Sbjct: 6   ALRSVPLVGNVLYRRLLDRFGSPEAVFRASDAELASVRGVSSAVAASIRGH 56


>gi|218898198|ref|YP_002446609.1| hypothetical protein BCG9842_B2107 [Bacillus cereus G9842]
 gi|228904984|ref|ZP_04069031.1| hypothetical protein bthur0014_61040 [Bacillus thuringiensis IBL
          4222]
 gi|218544341|gb|ACK96735.1| conserved hypothetical protein [Bacillus cereus G9842]
 gi|228854654|gb|EEM99265.1| hypothetical protein bthur0014_61040 [Bacillus thuringiensis IBL
          4222]
          Length = 213

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52


>gi|71064896|ref|YP_263623.1| NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
 gi|123734475|sp|Q4FUW9|DNLJ_PSYA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71037881|gb|AAZ18189.1| probable NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
          Length = 691

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+G    + L Q FG +  +  +S E L     +    A   Y  F 
Sbjct: 538 GIRGVGETTAQNLAQQFGDLDALMSASIEKLLLTPDVGAITAELAYKFFR 587


>gi|228908883|ref|ZP_04072714.1| hypothetical protein bthur0013_30400 [Bacillus thuringiensis IBL
          200]
 gi|228850750|gb|EEM95573.1| hypothetical protein bthur0013_30400 [Bacillus thuringiensis IBL
          200]
          Length = 207

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 16 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 46


>gi|229080299|ref|ZP_04212824.1| hypothetical protein bcere0023_29460 [Bacillus cereus Rock4-2]
 gi|229179401|ref|ZP_04306754.1| hypothetical protein bcere0005_27500 [Bacillus cereus 172560W]
 gi|229191218|ref|ZP_04318206.1| hypothetical protein bcere0002_28830 [Bacillus cereus ATCC 10876]
 gi|228592233|gb|EEK50064.1| hypothetical protein bcere0002_28830 [Bacillus cereus ATCC 10876]
 gi|228603902|gb|EEK61370.1| hypothetical protein bcere0005_27500 [Bacillus cereus 172560W]
 gi|228702968|gb|EEL55429.1| hypothetical protein bcere0023_29460 [Bacillus cereus Rock4-2]
          Length = 213

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52


>gi|170288545|ref|YP_001738783.1| hypothetical protein TRQ2_0748 [Thermotoga sp. RQ2]
 gi|170176048|gb|ACB09100.1| protein of unknown function DUF147 [Thermotoga sp. RQ2]
          Length = 352

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613
           F T+  IS++S E L  +EGI +K A  I        H+ TS 
Sbjct: 310 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 352


>gi|311896823|dbj|BAJ29231.1| putative DNA integrity scanning protein [Kitasatospora setae
           KM-6054]
          Length = 368

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L+  FG ++ +  +S + L ++EG+ +  A  +    
Sbjct: 316 IERLVDHFGGLQKLLAASIDDLQTVEGVGETRARSVREGL 355


>gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici]
          Length = 878

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  +
Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKENLRQY 235


>gi|167751779|ref|ZP_02423906.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216]
 gi|167660694|gb|EDS04824.1| hypothetical protein ALIPUT_00019 [Alistipes putredinis DSM 17216]
          Length = 323

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L   F T+  +  ++ E L   + +  KIA  I ++F
Sbjct: 72  VGETTAKYLAAHFRTLDAVMHATREELIEADEVGGKIADAIIDYF 116


>gi|153952836|ref|YP_001393601.1| DNA integrity scanning protein DisA [Clostridium kluyveri DSM 555]
 gi|189083127|sp|A5N4M2|DISA_CLOK5 RecName: Full=DNA integrity scanning protein disA
 gi|146345717|gb|EDK32253.1| Predicted DNA-binding protein [Clostridium kluyveri DSM 555]
          Length = 354

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L +I  I       L+++F  +K I  +S E L  +EGI +  A  I N   +
Sbjct: 291 LSKIPRIPATVMDNLVKNFKELKEIMEASYEDLDRVEGIGEARARAIKNGLRR 343


>gi|255971181|ref|ZP_05421767.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
 gi|255962199|gb|EET94675.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
          Length = 676

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|256828012|ref|YP_003156740.1| RecD/TraA family helicase [Desulfomicrobium baculatum DSM 4028]
 gi|256577188|gb|ACU88324.1| helicase, RecD/TraA family [Desulfomicrobium baculatum DSM 4028]
          Length = 724

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + GIG      L+  FG+ +  I  S PE L  +EGI       I + + +
Sbjct: 90  VKGIGEKTADRLISRFGSQILDIMDSDPEQLLEVEGIGPAKLKTIVSSWQE 140


>gi|183220911|ref|YP_001838907.1| transcription elongation factor NusA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911007|ref|YP_001962562.1| transcription elongation factor NusA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775683|gb|ABZ93984.1| Transcription elongation factor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779333|gb|ABZ97631.1| N utilization substance protein A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 466

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYNHFHKN 610
           ++PL EI G+ P R   LL++ G +K +      S E L+ I GI K  A +I     ++
Sbjct: 402 FTPLSEIPGLTP-RIVGLLEA-GGIKNVETLLEFSQEELSKISGIGKTTAEQILRLLRES 459


>gi|329576880|gb|EGG58365.1| DNA ligase [Enterococcus faecalis TX1467]
          Length = 676

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|261418366|ref|YP_003252048.1| DNA repair protein RadC [Geobacillus sp. Y412MC61]
 gi|319767675|ref|YP_004133176.1| DNA repair protein RadC [Geobacillus sp. Y412MC52]
 gi|261374823|gb|ACX77566.1| DNA repair protein RadC [Geobacillus sp. Y412MC61]
 gi|317112541|gb|ADU95033.1| DNA repair protein RadC [Geobacillus sp. Y412MC52]
          Length = 226

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL+ F  ++ +  ++ E + +I+GI    A +I    
Sbjct: 50  QRLLRHFEGLRSLKDATVEEMTNIKGIGPTKAVQILAAL 88


>gi|167752039|ref|ZP_02424166.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216]
 gi|167660280|gb|EDS04410.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216]
          Length = 712

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L   F T+  +  ++ E L   + +  KIA  I ++F
Sbjct: 523 VGETTAKYLAAHFRTLDAVMHATREELIEADEVGGKIADAIIDYF 567


>gi|293571939|ref|ZP_06682953.1| ComE operon protein 1 [Enterococcus faecium E980]
 gi|291607957|gb|EFF37265.1| ComE operon protein 1 [Enterococcus faecium E980]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 555 SPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           S L +I GIG ++ + +++ F    G+ + +     E L  I GI +K   K+ N 
Sbjct: 139 SELQQIPGIGSVKAQEIIR-FREENGSFQKV-----EDLQEISGIGEKTVEKLKNF 188


>gi|254776288|ref|ZP_05217804.1| NAD-dependent DNA ligase LigA [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 681

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG +  I  +S E LA++EG+   IA  +   F
Sbjct: 521 SIRHVGPTAARALATEFGDLDSIMSASTERLAAVEGVGPTIAAALTEWF 569


>gi|253689765|ref|YP_003018955.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756343|gb|ACT14419.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 681

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   FG+++ +  +  ETL ++  + K +A  + +   +  + T
Sbjct: 527 VGESTAANLAAHFGSLEALFAADEETLLAVPDVGKVVAAHVRHFLEEEHNQT 578


>gi|261367039|ref|ZP_05979922.1| DNA repair protein RadC [Subdoligranulum variabile DSM 15176]
 gi|282571158|gb|EFB76693.1| DNA repair protein RadC [Subdoligranulum variabile DSM 15176]
          Length = 244

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+Q FG    +  + PE L  ++GI +K A  I
Sbjct: 54  RLIQHFGDFCKVMEADPEELKQVKGIGEKSARLI 87


>gi|219853501|ref|YP_002470623.1| hypothetical protein CKR_0158 [Clostridium kluyveri NBRC 12016]
 gi|219567225|dbj|BAH05209.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 360

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L +I  I       L+++F  +K I  +S E L  +EGI +  A  I N   +
Sbjct: 297 LSKIPRIPATVMDNLVKNFKELKEIMEASYEDLDRVEGIGEARARAIKNGLRR 349


>gi|125718295|ref|YP_001035428.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK36]
 gi|166216249|sp|A3CNX3|DNLJ_STRSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125498212|gb|ABN44878.1| DNA ligase, putative [Streptococcus sanguinis SK36]
          Length = 652

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   +K   +     L  I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA
Sbjct: 485 AIQASKKNSAERLLFGL-GIRHVGSKASRILLEKFHDIPRLSQASQEEIAAIDSLGTVIA 543

Query: 601 CKIYNHFHKNTSH 613
             ++ +F +  S 
Sbjct: 544 QSLHTYFEQEGSQ 556


>gi|118465270|ref|YP_883031.1| NAD-dependent DNA ligase LigA [Mycobacterium avium 104]
 gi|166215821|sp|A0QJE3|DNLJ_MYCA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118166557|gb|ABK67454.1| DNA ligase, NAD-dependent [Mycobacterium avium 104]
          Length = 693

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG +  I  +S E LA++EG+   IA  +   F
Sbjct: 533 SIRHVGPTAARALATEFGDLDSIMSASTERLAAVEGVGPTIAAALTEWF 581


>gi|307330425|ref|ZP_07609569.1| DNA integrity scanning, DisA, linker region [Streptomyces
           violaceusniger Tu 4113]
 gi|306883942|gb|EFN14984.1| DNA integrity scanning, DisA, linker region [Streptomyces
           violaceusniger Tu 4113]
          Length = 368

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L  ++G+ +  A  +    
Sbjct: 316 IERLVEHFGGLQKLLAASVDDLQMVDGVGEARARSVREGL 355


>gi|302543540|ref|ZP_07295882.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461158|gb|EFL24251.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 368

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L  ++G+ +  A  +    
Sbjct: 316 IERLVEHFGGLQKLLAASVDDLQMVDGVGEARARSVREGL 355


>gi|297159389|gb|ADI09101.1| DNA integrity scanning protein DisA [Streptomyces bingchenggensis
           BCW-1]
          Length = 368

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG ++ +  +S + L  ++G+ +  A  +    
Sbjct: 316 IERLVEHFGGLQKLLAASVDDLQMVDGVGEARARSVREGL 355


>gi|291536367|emb|CBL09479.1| DNA ligase, NAD-dependent [Roseburia intestinalis M50/1]
          Length = 671

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + +++ F ++  +  +  + L  ++ + +  A  I+  FH   +
Sbjct: 513 GIPNVGKAAAKTIMKRFSSILDLEDADRDALMEVDDVGEVSADCIFRFFHDEKN 566


>gi|222613143|gb|EEE51275.1| hypothetical protein OsJ_32175 [Oryza sativa Japonica Group]
          Length = 430

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  +  +S E LA   GI ++   ++++ FH+
Sbjct: 304 FGSLSQVMNASMEELARCPGIGERKVKRLHDTFHE 338


>gi|73980826|ref|XP_540176.2| PREDICTED: similar to DNA excision repair protein ERCC-1 [Canis
           familiaris]
          Length = 461

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL +FG+++ +  +S E LA   G+  + A ++++  H+
Sbjct: 414 QTLLTTFGSLEQLMTASREDLALCPGLGPQKAWRLFDVLHE 454


>gi|315145225|gb|EFT89241.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2141]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|312900318|ref|ZP_07759629.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
 gi|311292506|gb|EFQ71062.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|307269776|ref|ZP_07551106.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
 gi|306513886|gb|EFM82488.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|256957407|ref|ZP_05561578.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
 gi|257077597|ref|ZP_05571958.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
 gi|294779927|ref|ZP_06745308.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
 gi|256947903|gb|EEU64535.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
 gi|256985627|gb|EEU72929.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
 gi|294452976|gb|EFG21397.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
 gi|295114065|emb|CBL32702.1| DNA ligase, NAD-dependent [Enterococcus sp. 7L76]
 gi|315036101|gb|EFT48033.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0027]
 gi|315172192|gb|EFU16209.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1346]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|255973805|ref|ZP_05424391.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
 gi|256964440|ref|ZP_05568611.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
 gi|257080988|ref|ZP_05575349.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
 gi|307272536|ref|ZP_07553789.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
 gi|307284516|ref|ZP_07564678.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
 gi|255966677|gb|EET97299.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
 gi|256954936|gb|EEU71568.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
 gi|256989018|gb|EEU76320.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
 gi|306503193|gb|EFM72447.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
 gi|306510821|gb|EFM79838.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
 gi|315151576|gb|EFT95592.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0012]
 gi|315170712|gb|EFU14729.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1342]
 gi|327534312|gb|AEA93146.1| NAD-dependent DNA ligase LigA [Enterococcus faecalis OG1RF]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|300861866|ref|ZP_07107946.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
 gi|300848391|gb|EFK76148.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|229546559|ref|ZP_04435284.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
 gi|256854411|ref|ZP_05559775.1| DNA ligase [Enterococcus faecalis T8]
 gi|307274689|ref|ZP_07555861.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
 gi|307296388|ref|ZP_07576212.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
 gi|229308304|gb|EEN74291.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
 gi|256709971|gb|EEU25015.1| DNA ligase [Enterococcus faecalis T8]
 gi|306496043|gb|EFM65628.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
 gi|306508618|gb|EFM77716.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
 gi|315029103|gb|EFT41035.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4000]
 gi|315157732|gb|EFU01749.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0312]
 gi|323479918|gb|ADX79357.1| DNA ligase, NAD-dependent [Enterococcus faecalis 62]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|291456400|ref|ZP_06595790.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213]
 gi|291381677|gb|EFE89195.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213]
          Length = 930

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +GP   RL+  + G++  I  ++ E L +I+G+  +IA  + N F
Sbjct: 774 LGPPTARLIASAMGSLGAIENATVEDLTAIDGVGPEIAESVVNWF 818


>gi|29375318|ref|NP_814472.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
 gi|227554838|ref|ZP_03984885.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
 gi|256761492|ref|ZP_05502072.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
 gi|257415292|ref|ZP_05592286.1| NAD-dependent DNA ligase [Enterococcus faecalis AR01/DG]
 gi|257418334|ref|ZP_05595328.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
 gi|81437298|sp|Q837V6|DNLJ_ENTFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29342778|gb|AAO80542.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
 gi|227176007|gb|EEI56979.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
 gi|256682743|gb|EEU22438.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
 gi|257157120|gb|EEU87080.1| NAD-dependent DNA ligase [Enterococcus faecalis ARO1/DG]
 gi|257160162|gb|EEU90122.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
 gi|315031451|gb|EFT43383.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0017]
 gi|315166929|gb|EFU10946.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1341]
 gi|315575350|gb|EFU87541.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309B]
 gi|315581380|gb|EFU93571.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309A]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|315161924|gb|EFU05941.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0645]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|257086082|ref|ZP_05580443.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
 gi|256994112|gb|EEU81414.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
 gi|315025779|gb|EFT37711.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2137]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLPTLSRATAEEIVALDSIGETIADSVVTYFENEE 568


>gi|228959356|ref|ZP_04121048.1| hypothetical protein bthur0005_28420 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228800305|gb|EEM47230.1| hypothetical protein bthur0005_28420 [Bacillus thuringiensis
          serovar pakistani str. T13001]
          Length = 208

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52


>gi|254374741|ref|ZP_04990222.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548]
 gi|151572460|gb|EDN38114.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548]
          Length = 678

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +   +L   FG+++    +  E L  I  I + +A  I + +H +
Sbjct: 526 GIKDIGEVSSDVLANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577


>gi|75763119|ref|ZP_00742895.1| UvrC-like protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|74489393|gb|EAO52833.1| UvrC-like protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
          Length = 84

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52


>gi|297529218|ref|YP_003670493.1| DNA repair protein RadC [Geobacillus sp. C56-T3]
 gi|297252470|gb|ADI25916.1| DNA repair protein RadC [Geobacillus sp. C56-T3]
          Length = 226

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL+ F  ++ +  ++ E + +I+GI    A +I    
Sbjct: 50  QRLLRHFEGLRSLKDATVEEMTNIKGIGPTKAVQILAAL 88


>gi|332678645|gb|AEE87774.1| DNA ligase [Francisella cf. novicida Fx1]
          Length = 678

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +   +L   FG+++    +  E L  I  I + +A  I + +H +
Sbjct: 526 GIKDIGEVSSDVLANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577


>gi|194307280|gb|ACF42137.1| DNA ligase [Mycobacterium lepromatosis]
          Length = 686

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG++  I  +SPE LA++EG+   IA  +   F
Sbjct: 525 SIRHVGPTAARALAAEFGSIDAILAASPEQLAAVEGVGAAIAAAVTEWF 573


>gi|149181655|ref|ZP_01860148.1| YqxK [Bacillus sp. SG-1]
 gi|148850633|gb|EDL64790.1| YqxK [Bacillus sp. SG-1]
          Length = 388

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISR-SSPETLASIEGISKKIACKIYNH 606
           PL+ I G+GP     LL  FGT   I      E +A +  I  ++A  I+  
Sbjct: 318 PLEYIPGLGPKTLEKLLNHFGTEMDILHFVPREKIAEVTTI--QLAESIHKA 367


>gi|317123124|ref|YP_004103127.1| DNA integrity scanning, DisA, linker region [Thermaerobacter
           marianensis DSM 12885]
 gi|315593104|gb|ADU52400.1| DNA integrity scanning, DisA, linker region [Thermaerobacter
           marianensis DSM 12885]
          Length = 355

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
             L+Q FG++  I  ++ E L  +EGI    A  I +   +     
Sbjct: 304 ENLVQHFGSLPRILAATVEQLDDVEGIGSVRARAIKDGLRRLQDQA 349


>gi|295111571|emb|CBL28321.1| DNA ligase, NAD-dependent [Synergistetes bacterium SGP1]
          Length = 683

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 567 RKRLLL-QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           R   LL + FG++  +S +S   +A +EG+   IA  +   F    +
Sbjct: 533 RVAELLAERFGSMDALSAASEAEIADVEGVGPVIASSVEAFFRDEAN 579


>gi|30021219|ref|NP_832850.1| UvrC-like protein [Bacillus cereus ATCC 14579]
 gi|229128444|ref|ZP_04257424.1| hypothetical protein bcere0015_28900 [Bacillus cereus BDRD-Cer4]
 gi|229145716|ref|ZP_04274097.1| hypothetical protein bcere0012_28670 [Bacillus cereus BDRD-ST24]
 gi|296503649|ref|YP_003665349.1| UvrC-like protein [Bacillus thuringiensis BMB171]
 gi|6759464|emb|CAB69792.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gi|29896773|gb|AAP10051.1| UvrC-like protein [Bacillus cereus ATCC 14579]
 gi|228637697|gb|EEK94146.1| hypothetical protein bcere0012_28670 [Bacillus cereus BDRD-ST24]
 gi|228655027|gb|EEL10885.1| hypothetical protein bcere0015_28900 [Bacillus cereus BDRD-Cer4]
 gi|296324701|gb|ADH07629.1| UvrC-like protein [Bacillus thuringiensis BMB171]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52


>gi|281412257|ref|YP_003346336.1| protein of unknown function DUF147 [Thermotoga naphthophila RKU-10]
 gi|281373360|gb|ADA66922.1| protein of unknown function DUF147 [Thermotoga naphthophila RKU-10]
          Length = 357

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613
           F T+  IS++S E L  +EGI +K A  I        H+ TS 
Sbjct: 315 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 357


>gi|218184890|gb|EEC67317.1| hypothetical protein OsI_34337 [Oryza sativa Indica Group]
          Length = 430

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  +  +S E LA   GI ++   ++++ FH+
Sbjct: 304 FGSLSQVMNASMEELARCPGIGERKVKRLHDTFHE 338


>gi|329897281|ref|ZP_08272019.1| DNA ligase [gamma proteobacterium IMCC3088]
 gi|328921277|gb|EGG28673.1| DNA ligase [gamma proteobacterium IMCC3088]
          Length = 674

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R K+  ++       I  +G      L   FG ++ +  +S + L ++  +   +A  I 
Sbjct: 505 RSKRTTFARFLYALGIREVGVTTAERLADYFGDIESLIAASVDDLLAVPDVGPIVANHIR 564

Query: 605 NHFHKNT 611
           +  + +T
Sbjct: 565 SFLNSST 571


>gi|258591348|emb|CBE67647.1| Transcription elongation protein nusA (N utilization substance
           protein A) (L factor) [NC10 bacterium 'Dutch sediment']
          Length = 433

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606
            L E+ G+G      L+++ G  + + ++ +S E L  +EGI  K A K+   
Sbjct: 371 RLAEVPGVGEKLADRLIEA-GVDSCRKLADASDEALVQVEGIGPKTAQKLIEA 422


>gi|229577664|ref|YP_001244320.2| DNA integrity scanning protein DisA [Thermotoga petrophila RKU-1]
          Length = 357

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613
           F T+  IS++S E L  +EGI +K A  I        H+ TS 
Sbjct: 315 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 357


>gi|226947391|ref|YP_002802482.1| helicase, RecD/TraA family [Clostridium botulinum A2 str. Kyoto]
 gi|226841096|gb|ACO83762.1| helicase, RecD/TraA family [Clostridium botulinum A2 str. Kyoto]
          Length = 744

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611
           I+GIGP+  + +++ FG  T+  I  S+ E L  IEGI KK    IY+ +  +N 
Sbjct: 88  ISGIGPVTAKKIVKKFGEETL-NILDSNIERLTEIEGIGKKKIEVIYDSYIKQNE 141


>gi|221235698|ref|YP_002518135.1| DNA repair protein RadC [Caulobacter crescentus NA1000]
 gi|220964871|gb|ACL96227.1| DNA repair protein radC [Caulobacter crescentus NA1000]
          Length = 221

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + LL  FG++  +  ++ E L +++G+ +  A  +    H+
Sbjct: 81  KALLTRFGSLDGVLGATVEELRTVQGVGEAAAMDLKL-LHE 120


>gi|196032022|ref|ZP_03099436.1| conserved hypothetical protein [Bacillus cereus W]
 gi|228928181|ref|ZP_04091223.1| hypothetical protein bthur0010_28810 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228946734|ref|ZP_04109041.1| hypothetical protein bthur0007_28720 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|195994773|gb|EDX58727.1| conserved hypothetical protein [Bacillus cereus W]
 gi|228812951|gb|EEM59265.1| hypothetical protein bthur0007_28720 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228831473|gb|EEM77068.1| hypothetical protein bthur0010_28810 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52


>gi|158321546|ref|YP_001514053.1| RecD/TraA family helicase [Alkaliphilus oremlandii OhILAs]
 gi|158141745|gb|ABW20057.1| helicase, RecD/TraA family [Alkaliphilus oremlandii OhILAs]
          Length = 748

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I GIG      ++  FGT  +++I  + P+ L  + GI +  A  I   F +
Sbjct: 96  IKGIGKKMAERIIDHFGTDALEIIQYA-PQRLTEVSGIGESKAETIAEAFEE 146


>gi|307704922|ref|ZP_07641813.1| comE operon protein 1 [Streptococcus mitis SK597]
 gi|307621536|gb|EFO00582.1| comE operon protein 1 [Streptococcus mitis SK597]
          Length = 215

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA+   L ++ G+G  R + ++        F +V        + L  + GI  K   K+ 
Sbjct: 158 KASLEELKQVKGLGGKRAQDIIDHRETNGKFKSV--------DELKKVSGIGAKTIEKLK 209

Query: 605 NH 606
           ++
Sbjct: 210 DY 211


>gi|307709136|ref|ZP_07645595.1| comE operon protein 1 [Streptococcus mitis SK564]
 gi|307620082|gb|EFN99199.1| comE operon protein 1 [Streptococcus mitis SK564]
          Length = 216

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA+   L ++ G+G  R + ++        F +V        + L  + GI  K   K+ 
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDHRETNGKFKSV--------DELKKVSGIGAKTIEKLK 210

Query: 605 NH 606
           ++
Sbjct: 211 DY 212


>gi|303247047|ref|ZP_07333322.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
 gi|302491473|gb|EFL51358.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
          Length = 693

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    R L + F  +  ++ ++ E L ++  I  ++A  I   F    +
Sbjct: 534 VGTRTARTLAEHFRDLDGLAAATSEDLTALPDIGPEVAGSIREFFDNAAN 583


>gi|168017901|ref|XP_001761485.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687169|gb|EDQ73553.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1163

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 559  EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
             I  +G +    LL+  FG+++ +  +S E L  + GI    A  I++ 
Sbjct: 956  GIPSVG-VTAAKLLEQWFGSMERLLVASREELLLVPGIGTVSASAIHDW 1003


>gi|49481638|ref|YP_037220.1| UvrC-like protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|49333194|gb|AAT63840.1| UvrC-like protein [Bacillus thuringiensis serovar konkukian str.
          97-27]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52


>gi|328956034|ref|YP_004373367.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
 gi|328456358|gb|AEB07552.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
          Length = 752

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G     LL + FG+++ +  ++ E +A I+GI  KIA      F
Sbjct: 580 GIRHVGKSVGELLARHFGSIEALIEANEEEIAGIDGIGPKIASSTKMFF 628


>gi|254448715|ref|ZP_05062173.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
 gi|198261723|gb|EDY86010.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
          Length = 673

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 23/45 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G +  R L   FG ++ I ++S + L ++  +   +A  + + F
Sbjct: 523 VGEVTARNLAMHFGDLEPIMQASEDDLLAVADVGPIVAAHVKSFF 567


>gi|146301217|ref|YP_001195808.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
 gi|190359257|sp|A5FE87|DNLJ_FLAJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146155635|gb|ABQ06489.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
          Length = 668

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L + +  +  +S++S   L  ++ I ++IA  +   F    +
Sbjct: 515 VGETVAKKLAKHYKNIDALSQASLMDLILVDEIGERIARSVIEFFENEEN 564


>gi|228986193|ref|ZP_04146334.1| hypothetical protein bthur0001_28790 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773511|gb|EEM21936.1| hypothetical protein bthur0001_28790 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA++++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 19  DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|229030797|ref|ZP_04186821.1| hypothetical protein bcere0028_28620 [Bacillus cereus AH1271]
 gi|228730518|gb|EEL81474.1| hypothetical protein bcere0028_28620 [Bacillus cereus AH1271]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA++++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 19  DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|78044921|ref|YP_359263.1| competence protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997036|gb|ABB15935.1| competence protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 204

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 14/58 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LDE+ G+GP     +++       F        ++ E L  ++GI  K    + ++ 
Sbjct: 152 ELDELPGVGPATAAKIIEYREQNGPF--------ATIEDLKKVKGIGDKKFETLKDYI 201


>gi|148244045|ref|YP_001220283.1| RecD/TraA family helicase [Acidiphilium cryptum JF-5]
 gi|325113165|ref|YP_004277111.1| putative exodeoxyribonuclease V alpha subunit [Acidiphilium
           multivorum AIU301]
 gi|146400608|gb|ABQ29141.1| ATP-dependent DNA helicase, RecD/TraA family [Acidiphilium cryptum
           JF-5]
 gi|325052632|dbj|BAJ82969.1| putative exodeoxyribonuclease V alpha subunit [Acidiphilium
           multivorum AIU301]
          Length = 731

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNH 606
           I GIGP+  + L+++FG TV  +  + PE L  + GI    A +I N 
Sbjct: 105 IRGIGPVYAKKLIRAFGETVFDVIEAKPERLREVPGIGAVRAGRIVNA 152


>gi|148243790|ref|YP_001220030.1| RecD/TraA family helicase [Acidiphilium cryptum JF-5]
 gi|146400353|gb|ABQ28888.1| helicase, RecD/TraA family [Acidiphilium cryptum JF-5]
          Length = 731

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNH 606
           I GIGP+  + L+++FG TV  +  + PE L  + GI    A +I N 
Sbjct: 105 IRGIGPVYAKKLIRAFGDTVFDVIEAKPERLREVPGIGAVRAGRIVNA 152


>gi|118497929|ref|YP_898979.1| DNA ligase [Francisella tularensis subsp. novicida U112]
 gi|194323151|ref|ZP_03056935.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida
           FTE]
 gi|166215758|sp|A0Q7L0|DNLJ_FRATN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|118423835|gb|ABK90225.1| DNA ligase [Francisella novicida U112]
 gi|194322515|gb|EDX19995.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida
           FTE]
          Length = 678

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +   +L   FG+++    +  E L  I  I + +A  I + +H +
Sbjct: 526 GIKDIGEVSSDVLANHFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDS 577


>gi|126458706|ref|YP_001054984.1| DEAD/DEAH box helicase domain-containing protein [Pyrobaculum
           calidifontis JCM 11548]
 gi|226740608|sp|A3MSA1|HELS_PYRCJ RecName: Full=Putative ski2-type helicase
 gi|126248427|gb|ABO07518.1| DEAD/DEAH box helicase domain protein [Pyrobaculum calidifontis JCM
           11548]
          Length = 708

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 562 GIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           G+G +R R L   FG  T++ I+R++   +AS+ G  +K+A  +  
Sbjct: 650 GVGRVRARTLYN-FGYRTLEDIARATVREIASLPGFGEKLAESVIE 694


>gi|147918727|ref|YP_687550.1| putative DNA mismatch repair protein, N-terminal fragment
           [uncultured methanogenic archaeon RC-I]
 gi|110622946|emb|CAJ38224.1| putative DNA mismatch repair protein, N-terminal fragment
           [uncultured methanogenic archaeon RC-I]
          Length = 565

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKI 603
           S L    GIG      L++ FG+    +++++R    +LA + GIS+K A  I
Sbjct: 4   SELTGYPGIGEKIAAKLVEHFGSEEQALEILNRRDVASLAEVPGISEKYAVSI 56


>gi|284989239|ref|YP_003407793.1| DNA integrity scanning, DisA, linker region [Geodermatophilus
           obscurus DSM 43160]
 gi|284062484|gb|ADB73422.1| DNA integrity scanning, DisA, linker region [Geodermatophilus
           obscurus DSM 43160]
          Length = 361

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG ++ +  ++ E L ++EG+ +  A  I    
Sbjct: 311 RLVDHFGGLQKLLAATIEDLLAVEGVGEARARGIREGL 348


>gi|218230779|ref|YP_002367837.1| hypothetical protein BCB4264_A3130 [Bacillus cereus B4264]
 gi|229110562|ref|ZP_04240130.1| hypothetical protein bcere0018_28140 [Bacillus cereus Rock1-15]
 gi|218158736|gb|ACK58728.1| conserved hypothetical protein [Bacillus cereus B4264]
 gi|228672887|gb|EEL28163.1| hypothetical protein bcere0018_28140 [Bacillus cereus Rock1-15]
          Length = 208

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52


>gi|108804996|ref|YP_644933.1| DNA integrity scanning protein DisA [Rubrobacter xylanophilus DSM
           9941]
 gi|108766239|gb|ABG05121.1| protein of unknown function DUF147 [Rubrobacter xylanophilus DSM
           9941]
          Length = 361

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
                L++ FG+++ +  +S   L  +EG+ +  A  I+   
Sbjct: 307 KVAENLIREFGSLEGLLEASEAELDEVEGVGQARARAIHRGL 348


>gi|301054628|ref|YP_003792839.1| UvrC-like protein [Bacillus anthracis CI]
 gi|300376797|gb|ADK05701.1| UvrC-like protein [Bacillus cereus biovar anthracis str. CI]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA++++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 19  DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  ---LLKRSLLQVTYTIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|297544111|ref|YP_003676413.1| NAD-dependent DNA ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841886|gb|ADH60402.1| DNA ligase, NAD-dependent [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 662

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           IG    +++ + F T+  I ++  E    +  +  K+A  I + F +  +
Sbjct: 511 IGSKAAQVIAEHFKTIDDIMKAKFEDFTKLPDVGPKMARSIVSFFAEKQN 560


>gi|256397462|ref|YP_003119026.1| DNA integrity scanning protein DisA [Catenulispora acidiphila DSM
           44928]
 gi|256363688|gb|ACU77185.1| protein of unknown function DUF147 [Catenulispora acidiphila DSM
           44928]
          Length = 362

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L  +EG+ +  A  +    
Sbjct: 312 RLVEHFGGLQKLLAASIDDLQRVEGVGETRARSVREGL 349


>gi|121535700|ref|ZP_01667504.1| protein of unknown function DUF147 [Thermosinus carboxydivorans
           Nor1]
 gi|121305731|gb|EAX46669.1| protein of unknown function DUF147 [Thermosinus carboxydivorans
           Nor1]
          Length = 359

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
             L+  F T+  I  ++   L  +EGI +  A  I +   +
Sbjct: 308 ENLVAHFKTLHRIYNATIAELDEVEGIGEVRAKTIKDGLKR 348


>gi|156739319|ref|NP_001096608.1| DNA excision repair protein ERCC-1 [Danio rerio]
 gi|187608525|ref|NP_001120181.1| hypothetical protein LOC100145222 [Xenopus (Silurana) tropicalis]
 gi|44890524|gb|AAH66697.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 1 [Danio rerio]
 gi|156230040|gb|AAI52195.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 1 [Danio rerio]
 gi|159570274|emb|CAP19619.1| novel protein similar to vertebrate excision repair
           cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence) (ERCC1, zgc:77511) [Danio rerio]
 gi|166796426|gb|AAI59290.1| LOC100145222 protein [Xenopus (Silurana) tropicalis]
          Length = 342

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL +F +++ I ++S E L    G+  + A ++Y+  H+
Sbjct: 294 LLSTFSSLEGIIKASKEELVLCPGLGPQKARRLYDVLHQ 332


>gi|10122039|gb|AAG13428.1|AC051634_9 putative nucleotide repair protein [Oryza sativa Japonica Group]
          Length = 395

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  +  +S E LA   GI ++   ++++ FH+
Sbjct: 261 FGSLSQVMNASMEELARCPGIGERKVKRLHDTFHE 295


>gi|300770008|ref|ZP_07079887.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762484|gb|EFK59301.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 370

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L ++ GIGP   R LL    TV+ I  +S + L +I GI+  I  ++
Sbjct: 8   ALTKVKGIGPRLSRSLLSHCDTVEAIFTASKKQLLTIPGINIAIIERL 55


>gi|145298235|ref|YP_001141076.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166215387|sp|A4SKA6|DNLJ_AERS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|142851007|gb|ABO89328.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 664

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 18/47 (38%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  +S E L  +  +   +A  +Y    +
Sbjct: 519 VGEATALNLANHFLTLDALRAASVEQLLEVADVGDIVAKHVYYFLRQ 565


>gi|117618613|ref|YP_855770.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166215386|sp|A0KHL9|DNLJ_AERHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117560020|gb|ABK36968.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 668

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 18/47 (38%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   F T+  +  +S E L  +  +   +A  +Y    +
Sbjct: 519 VGEATALNLANHFLTLDALRAASVEQLLEVADVGDIVAKHVYYFLRQ 565


>gi|228940146|ref|ZP_04102718.1| hypothetical protein bthur0008_27960 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228973139|ref|ZP_04133730.1| hypothetical protein bthur0003_29010 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228979674|ref|ZP_04139999.1| hypothetical protein bthur0002_28490 [Bacillus thuringiensis
          Bt407]
 gi|228780069|gb|EEM28311.1| hypothetical protein bthur0002_28490 [Bacillus thuringiensis
          Bt407]
 gi|228786597|gb|EEM34585.1| hypothetical protein bthur0003_29010 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228819523|gb|EEM65576.1| hypothetical protein bthur0008_27960 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|326940215|gb|AEA16111.1| UvrC-like protein [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++YVGKA++++ R+ ++ +S
Sbjct: 22 GIYFIKDYNDNIIYVGKAFSIKSRVLAHFNS 52


>gi|170290825|ref|YP_001737641.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174905|gb|ACB07958.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 336

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L E+ G+GP   + L ++ F +++ I+ S+P  LA   GIS+ +A KI   
Sbjct: 29  LTELEGVGPATAKRLAEAGFTSLESIAMSTPSELAVYAGISEAVAQKIIQA 79


>gi|226729444|sp|A5IKM1|DISA_THEP1 RecName: Full=DNA integrity scanning protein disA
 gi|147735404|gb|ABQ46744.1| protein of unknown function DUF147 [Thermotoga petrophila RKU-1]
          Length = 352

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKNTSH 613
           F T+  IS++S E L  +EGI +K A  I        H+ TS 
Sbjct: 310 FKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKTSE 352


>gi|115314545|ref|YP_763268.1| DNA ligase [Francisella tularensis subsp. holarctica OSU18]
 gi|122325430|sp|Q0BMQ3|DNLJ_FRATO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115129444|gb|ABI82631.1| DNA ligase (NAD(+)) [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 678

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +    L   FG+++    +  E L  I  + + IA  I + +H +
Sbjct: 526 GIKDIGEVSSDALANHFGSLESFRDAKFEELIEINYVGEIIANNIVSFWHDS 577


>gi|260824255|ref|XP_002607083.1| hypothetical protein BRAFLDRAFT_118676 [Branchiostoma floridae]
 gi|229292429|gb|EEN63093.1| hypothetical protein BRAFLDRAFT_118676 [Branchiostoma floridae]
          Length = 427

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L+ +F +++ I ++S E LA   G   + A ++Y+  H+
Sbjct: 375 LVTTFRSIEGIIKASKEDLALCPGFGPQKAKRVYDALHQ 413


>gi|223940790|ref|ZP_03632624.1| DNA repair protein RadC [bacterium Ellin514]
 gi|223890547|gb|EEF57074.1| DNA repair protein RadC [bacterium Ellin514]
          Length = 244

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 559 EINGIGPLR-KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+  +     LL  FGT+  +SR++   L  ++GI +  A  + + F
Sbjct: 50  GLKGVSAITVAEQLLHRFGTLDTLSRATLADLCKVKGIGRDKAIALKSAF 99


>gi|315652468|ref|ZP_07905453.1| DNA ligase [Eubacterium saburreum DSM 3986]
 gi|315485257|gb|EFU75654.1| DNA ligase [Eubacterium saburreum DSM 3986]
          Length = 649

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 29/119 (24%)

Query: 510 FFVKKGEALVLNM------RDPIL------YFIQRLRDEAHRFAITTHRKRRKKAAYSPL 557
           F     +   L+                    I  L DEA            K    S  
Sbjct: 445 FIKSDSDLFRLDKFKDEIINMEGFGKRSYEKLIAAL-DEA------------KNTTVSRF 491

Query: 558 D---EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
                I GIG    +++ + F   +  I  +S + L  IEGI + +A  I + F    +
Sbjct: 492 LYSLGIAGIGSANAKMIAKYFDNDIDRIISASKDDLRDIEGIGEVLAGSIEDFFKSEKN 550


>gi|319793880|ref|YP_004155520.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
 gi|315596343|gb|ADU37409.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
          Length = 694

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    + L + FG +  I  ++ + L  +  +   +A  +   F
Sbjct: 537 GIRHVGESTAKDLAKHFGKLDAIMDATEQQLLEVNDVGPVVAQSLRTFF 585


>gi|304391571|ref|ZP_07373513.1| putative DNA repair protein RadC-like protein [Ahrensia sp. R2A130]
 gi|303295800|gb|EFL90158.1| putative DNA repair protein RadC-like protein [Ahrensia sp. R2A130]
          Length = 259

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + LL+ FG+V+ +  +S   L  +E +  ++A  +
Sbjct: 83  KRLLKKFGSVRGVLGASSAELQKVEKVGPRMAENL 117


>gi|295697533|ref|YP_003590771.1| helicase, RecD/TraA family [Bacillus tusciae DSM 2912]
 gi|295413135|gb|ADG07627.1| helicase, RecD/TraA family [Bacillus tusciae DSM 2912]
          Length = 761

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKIYNHFHKN 610
           I G+GP     L+  FG  + I R   +    L  +EGI  + A +I   + ++
Sbjct: 87  IRGVGPKTAERLVDHFG--QDILRVIEDEPGRLREVEGIGARKAEQIAEGYREH 138


>gi|229185340|ref|ZP_04312523.1| hypothetical protein bcere0004_28940 [Bacillus cereus BGSC 6E1]
 gi|228598073|gb|EEK55710.1| hypothetical protein bcere0004_28940 [Bacillus cereus BGSC 6E1]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA++++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 19  DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus]
          Length = 878

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  H
Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKETLRQH 235


>gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus]
          Length = 878

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  H
Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDEIK-----GEKLKETLRQH 235


>gi|220907422|ref|YP_002482733.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Cyanothece sp. PCC 7425]
 gi|219864033|gb|ACL44372.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Cyanothece sp. PCC 7425]
          Length = 585

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + LD + GIGP   + ++ +  + K    +S + L ++ GI   +  KI +
Sbjct: 531 ATEAELDALPGIGPKTAKAMIAA-RSEKPF--ASLDDLDAVPGIGPSVLEKIQD 581


>gi|148265710|ref|YP_001232416.1| DNA protecting protein DprA [Geobacter uraniireducens Rf4]
 gi|146399210|gb|ABQ27843.1| DNA protecting protein DprA [Geobacter uraniireducens Rf4]
          Length = 359

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH----FHKNT 611
            L  I  +G +  R LL+ F T +   ++S   L++++G+S   A  I  H    F +  
Sbjct: 8   ALKSIPLVGNVTFRRLLERFDTPERALKASASELSTVKGVSAAAAASILTHDYRPFAERE 67

Query: 612 SHT 614
           S  
Sbjct: 68  SEA 70


>gi|134097048|ref|YP_001102709.1| DNA integrity scanning protein DisA [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291007011|ref|ZP_06564984.1| DNA integrity scanning protein DisA [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909671|emb|CAL99783.1| protein of unknown function DUF147 [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 370

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 23/40 (57%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           ++ L++ FG+++ +  ++ E L+ +E + +  A ++    
Sbjct: 318 RKQLVEHFGSLQNLLAATAEDLSVVESVGESRARQVREGL 357


>gi|327475235|gb|AEA77212.1| DNA ligase [Exiguobacterium sp. EPVM]
          Length = 664

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G     L+ + F T++ +  +S + L SI+GI  K+A  I  +F K  +
Sbjct: 511 VGQKAAVLIAERFETMEAVMEASIDELTSIDGIGTKMAESISLYFEKPEA 560


>gi|322831833|ref|YP_004211860.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
 gi|321167034|gb|ADW72733.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
          Length = 673

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   +G+V+ +  +  E+L  ++ +   +A  + N   +  +  
Sbjct: 520 VGEATAANLAAHYGSVEALKAADIESLKGVQDVGDVVAKHVVNFLSEEHNQQ 571


>gi|156230822|gb|AAI51884.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 1 [Danio rerio]
          Length = 342

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL +F +++ I ++S E L    G+  + A ++Y+  H+
Sbjct: 294 LLSTFSSLEGIIKASKEELVLCPGLGPQKARRLYDVLHQ 332


>gi|115482968|ref|NP_001065077.1| Os10g0518900 [Oryza sativa Japonica Group]
 gi|78708916|gb|ABB47891.1| DNA excision repair protein ERCC-1, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639686|dbj|BAF26991.1| Os10g0518900 [Oryza sativa Japonica Group]
 gi|215697952|dbj|BAG92132.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 387

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  +  +S E LA   GI ++   ++++ FH+
Sbjct: 261 FGSLSQVMNASMEELARCPGIGERKVKRLHDTFHE 295


>gi|324327082|gb|ADY22342.1| UvrC-like protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA++++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 19  DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|257865964|ref|ZP_05645617.1| DNA ligase [Enterococcus casseliflavus EC30]
 gi|257872297|ref|ZP_05651950.1| DNA ligase [Enterococcus casseliflavus EC10]
 gi|257799898|gb|EEV28950.1| DNA ligase [Enterococcus casseliflavus EC30]
 gi|257806461|gb|EEV35283.1| DNA ligase [Enterococcus casseliflavus EC10]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R+L + FG ++ +S++  E + S+E I   IA  +  +F    
Sbjct: 513 GIRHVGAKAARILAEHFGDLRALSKAKEEEIISLEAIGATIAESVVTYFDNQE 565


>gi|65320392|ref|ZP_00393351.1| COG0322: Nuclease subunit of the excinuclease complex [Bacillus
           anthracis str. A2012]
          Length = 207

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA++++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 13  DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 67

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 68  ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 107


>gi|251799680|ref|YP_003014411.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. JDR-2]
 gi|247547306|gb|ACT04325.1| DNA ligase, NAD-dependent [Paenibacillus sp. JDR-2]
          Length = 677

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I   G    ++L   +G++  +  ++ E L  ++ +   +A  I N+F
Sbjct: 521 GIPNTGKATTKMLADHYGSLDGVMSATAEELVGLQDVGAIVADSIVNYF 569


>gi|118478441|ref|YP_895592.1| UvrC-like protein [Bacillus thuringiensis str. Al Hakam]
 gi|196042720|ref|ZP_03109959.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|118417666|gb|ABK86085.1| UvrC-like protein [Bacillus thuringiensis str. Al Hakam]
 gi|196026204|gb|EDX64872.1| conserved hypothetical protein [Bacillus cereus 03BB108]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA++++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 19  DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|30263084|ref|NP_845461.1| hypothetical protein BA_3140 [Bacillus anthracis str. Ames]
 gi|47528430|ref|YP_019779.1| hypothetical protein GBAA_3140 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185924|ref|YP_029176.1| hypothetical protein BAS2918 [Bacillus anthracis str. Sterne]
 gi|165869080|ref|ZP_02213740.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167631863|ref|ZP_02390190.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167637335|ref|ZP_02395615.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170685061|ref|ZP_02876286.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170705305|ref|ZP_02895770.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177650283|ref|ZP_02933284.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190565009|ref|ZP_03017930.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227814065|ref|YP_002814074.1| hypothetical protein BAMEG_1472 [Bacillus anthracis str. CDC 684]
 gi|229602867|ref|YP_002867354.1| hypothetical protein BAA_3187 [Bacillus anthracis str. A0248]
 gi|254685676|ref|ZP_05149535.1| hypothetical protein BantC_17720 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723087|ref|ZP_05184875.1| hypothetical protein BantA1_11509 [Bacillus anthracis str. A1055]
 gi|254738143|ref|ZP_05195846.1| hypothetical protein BantWNA_23539 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742687|ref|ZP_05200372.1| hypothetical protein BantKB_17022 [Bacillus anthracis str. Kruger
           B]
 gi|254752457|ref|ZP_05204493.1| hypothetical protein BantV_08316 [Bacillus anthracis str. Vollum]
 gi|254760975|ref|ZP_05212999.1| hypothetical protein BantA9_21906 [Bacillus anthracis str.
           Australia 94]
 gi|30257717|gb|AAP26947.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47503578|gb|AAT32254.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179851|gb|AAT55227.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164715806|gb|EDR21323.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167514842|gb|EDR90208.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167532161|gb|EDR94797.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170130160|gb|EDS99022.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170671321|gb|EDT22059.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172084235|gb|EDT69294.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190564326|gb|EDV18290.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227005053|gb|ACP14796.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|229267275|gb|ACQ48912.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA++++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 19  DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|315613211|ref|ZP_07888121.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
 gi|315314773|gb|EFU62815.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
          Length = 652

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LLLQ F +++ ++++ PE +ASIE +   IA  +  +F
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGSVIAQSLQTYF 550


>gi|306825169|ref|ZP_07458511.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432605|gb|EFM35579.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 652

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LLLQ F +++ ++++ PE +ASIE +   IA  +  +F
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGSVIAQSLQTYF 550


>gi|293365500|ref|ZP_06612209.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037]
 gi|307703456|ref|ZP_07640398.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037]
 gi|291315868|gb|EFE56312.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037]
 gi|307622863|gb|EFO01858.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037]
          Length = 652

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LLLQ F +++ ++++ PE +ASIE +   IA  +  +F
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGSVIAQSLQTYF 550


>gi|257875591|ref|ZP_05655244.1| DNA ligase [Enterococcus casseliflavus EC20]
 gi|257809757|gb|EEV38577.1| DNA ligase [Enterococcus casseliflavus EC20]
          Length = 676

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R+L + FG ++ +S++  E + S+E I   IA  +  +F    
Sbjct: 513 GIRHVGAKAARILAEHFGDLRALSKAKEEEIISLEAIGATIAESVVTYFDNQE 565


>gi|196233436|ref|ZP_03132280.1| DNA protecting protein DprA [Chthoniobacter flavus Ellin428]
 gi|196222576|gb|EDY17102.1| DNA protecting protein DprA [Chthoniobacter flavus Ellin428]
          Length = 362

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ + G+GP+R R LL+ F T + +  +    L +++GI  ++A  I
Sbjct: 9   ALNMVPGVGPVRLRRLLEVFETPEQVLLAREGQLRAVDGIGAEVAAGI 56


>gi|218904267|ref|YP_002452101.1| hypothetical protein BCAH820_3151 [Bacillus cereus AH820]
 gi|228934379|ref|ZP_04097217.1| hypothetical protein bthur0009_28380 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|229125018|ref|ZP_04254186.1| hypothetical protein bcere0016_52910 [Bacillus cereus 95/8201]
 gi|218534802|gb|ACK87200.1| conserved hypothetical protein [Bacillus cereus AH820]
 gi|228658434|gb|EEL14106.1| hypothetical protein bcere0016_52910 [Bacillus cereus 95/8201]
 gi|228825281|gb|EEM71076.1| hypothetical protein bthur0009_28380 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 23/34 (67%)

Query: 8  ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          +  G+Y + D    ++Y+GKA++++ R+ ++ +S
Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNS 52


>gi|52142393|ref|YP_084435.1| UvrC-like protein [Bacillus cereus E33L]
 gi|51975862|gb|AAU17412.1| UvrC-like protein [Bacillus cereus E33L]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA++++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 19  DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|289524079|ref|ZP_06440933.1| DNA repair protein RadC [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502735|gb|EFD23899.1| DNA repair protein RadC [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 309

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R LL  FG+++ I  +    ++ I+GI    A +I    
Sbjct: 125 RTLLNRFGSLRGIDSAPISEISKIDGIGLAKAVQIKAAL 163


>gi|313665597|ref|YP_004047468.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
 gi|312949194|gb|ADR23790.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
          Length = 668

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L + +  +  +  +S + L  I  I + +A  I + F    +
Sbjct: 513 GIRHIGSKTAKILAKKYQNIDNLMSASYDELIQINSIGESLALSIVDWFKIEDN 566


>gi|260550982|ref|ZP_05825187.1| DNA ligase [Acinetobacter sp. RUH2624]
 gi|260405930|gb|EEW99417.1| DNA ligase [Acinetobacter sp. RUH2624]
          Length = 691

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    R+L  +F T++ +  ++ E L     +    A  I + F
Sbjct: 534 GIRGVGETTARMLANTFQTLEALKAANVEVLKKTPDVGDITAEWIADFF 582


>gi|90577974|ref|ZP_01233785.1| hypothetical protein VAS14_13024 [Vibrio angustum S14]
 gi|90441060|gb|EAS66240.1| hypothetical protein VAS14_13024 [Vibrio angustum S14]
          Length = 158

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 11  GVYQMLDIAGRVLYVGKAY-NLQKRIKSYM--HSNNHTHRITHMIS--QINNIRFTVTCT 65
           GVY + +    ++ VG +  NL  R+ +Y     N H+  I   +       +R     +
Sbjct: 36  GVYILFNDQQDIIRVGSSTSNLYSRLNTYFDYKDNTHSVGIGWWVEGVSARYVRTITVPS 95

Query: 66  E--VEALLLEANMIKRLKPRFN 85
           E   EAL +E  ++ +L P  N
Sbjct: 96  EQSFEALSIEKFLLDKLTPPLN 117


>gi|317489959|ref|ZP_07948451.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
 gi|316910957|gb|EFV32574.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
          Length = 708

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 19/100 (19%)

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKR 569
           K GE + L         +  + DE+ R   FA         +A +     I  +G     
Sbjct: 511 KDGEPIRLGST-VAKKLVAAI-DES-RTRPFA---------RALFG--LGIRHVG-KTIA 555

Query: 570 LLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            LL + + +++ +  +S E LA+I+G+  KIA   Y    
Sbjct: 556 ELLAAAYPSIEALMEASEEDLAAIDGVGPKIARSAYLFLR 595


>gi|228915707|ref|ZP_04079290.1| hypothetical protein bthur0012_29260 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228843937|gb|EEM89003.1| hypothetical protein bthur0012_29260 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
          Length = 213

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 23/34 (67%)

Query: 8  ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          +  G+Y + D    ++Y+GKA++++ R+ ++ +S
Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNS 52


>gi|152991703|ref|YP_001357424.1| DNA uptake protein [Sulfurovum sp. NBC37-1]
 gi|151423564|dbj|BAF71067.1| DNA uptake protein [Sulfurovum sp. NBC37-1]
          Length = 111

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 13/59 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ-----SFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+ S L +I GIG  +   +++      F +         E    +EGI ++ A  + N
Sbjct: 28  ASKSELMQIKGIGEKKADAIIKERKKGKFKSF--------EDFQRVEGIGEQTAKNVRN 78


>gi|123966300|ref|YP_001011381.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200666|gb|ABM72274.1| Helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus
           marinus str. MIT 9515]
          Length = 110

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +K     L  I G+G        ++ F T K I+ ++ E L ++ G+   +  K+ N
Sbjct: 52  QKKLIEALKAIPGVGAKSAEAFYKAGFKTPKAITSANDEDLLAVPGVGINLVKKLKN 108


>gi|241668131|ref|ZP_04755709.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876666|ref|ZP_05249376.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842687|gb|EET21101.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 678

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G +    L   FG+++    +  E L  I  I + IA  I + +  +
Sbjct: 526 GIKDVGEVSSEALANHFGSLESFREAKFEQLIEINDIGEIIAKNIVSFWQDS 577


>gi|332672001|ref|YP_004455009.1| DNA integrity scanning, DisA, linker region [Cellulomonas fimi ATCC
           484]
 gi|332341039|gb|AEE47622.1| DNA integrity scanning, DisA, linker region [Cellulomonas fimi ATCC
           484]
          Length = 356

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG ++ +  ++ + L +++G+ ++ A  +    
Sbjct: 306 RLVAHFGGLQKLLAATIDDLMAVDGVGEQRARAVREGL 343


>gi|222096607|ref|YP_002530664.1| uvrc-like protein [Bacillus cereus Q1]
 gi|221240665|gb|ACM13375.1| UvrC-like protein [Bacillus cereus Q1]
          Length = 213

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA++++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 19  DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|254820448|ref|ZP_05225449.1| NAD-dependent DNA ligase LigA [Mycobacterium intracellulare ATCC
           13950]
          Length = 693

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   FG +  I  +S E LA++EG+   IA  +   F
Sbjct: 533 SIRHVGPTAARALATEFGDLDAIVSASTERLAAVEGVGPTIAAALTEWF 581


>gi|220907030|ref|YP_002482341.1| DNA protecting protein DprA [Cyanothece sp. PCC 7425]
 gi|219863641|gb|ACL43980.1| DNA protecting protein DprA [Cyanothece sp. PCC 7425]
          Length = 370

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +I G+GP+  + L Q FG++     + PE L ++ GI ++   +I +   K     
Sbjct: 13  QIPGVGPVLIQRLQQRFGSLSEAWFAPPEALKTVAGIGQQTLEEIQSFRSKTDPEA 68


>gi|168182222|ref|ZP_02616886.1| helicase, RecD/TraA family [Clostridium botulinum Bf]
 gi|237793487|ref|YP_002861039.1| helicase, RecD/TraA family [Clostridium botulinum Ba4 str. 657]
 gi|182674605|gb|EDT86566.1| helicase, RecD/TraA family [Clostridium botulinum Bf]
 gi|229263170|gb|ACQ54203.1| helicase, RecD/TraA family [Clostridium botulinum Ba4 str. 657]
          Length = 744

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611
           I+GIGP+  + +++ FG  T+  I  ++ E L  IEGI KK    IY+ +  +N 
Sbjct: 88  ISGIGPVTAKKIVKKFGEETL-NILENNIERLTEIEGIGKKKIEIIYDSYIKQNE 141


>gi|167627564|ref|YP_001678064.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|190359258|sp|B0TY02|DNLJ_FRAP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167597565|gb|ABZ87563.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 678

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G +    L   FG+++    +  E L  I  I + IA  I + +  +
Sbjct: 526 GIKDVGEVSSEALANHFGSLESFREAKFEQLIEINDIGEIIAKNIVSFWQDS 577


>gi|37525354|ref|NP_928698.1| NAD-dependent DNA ligase LigA [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81416713|sp|Q7MBH2|DNLJ_PHOLL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|36784781|emb|CAE13691.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 672

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   FG +  +  +  E L  ++ + + +A  + N F
Sbjct: 520 VGEATAANLAAHFGELDKLRSADEEALKEVQDVGEVVAKHVVNFF 564


>gi|319939206|ref|ZP_08013569.1| competence protein CelA [Streptococcus anginosus 1_2_62CV]
 gi|319811602|gb|EFW07878.1| competence protein CelA [Streptococcus anginosus 1_2_62CV]
          Length = 234

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606
           A  S L  I+GIG  R + +L           +     S + L ++ G+  K   K+  +
Sbjct: 178 ADLSELQTISGIGQKRAQDILDY-------REANGKFNSVDDLKNVSGVGAKTLEKLKEY 230


>gi|315223048|ref|ZP_07864927.1| comEA protein [Streptococcus anginosus F0211]
 gi|315187998|gb|EFU21734.1| comEA protein [Streptococcus anginosus F0211]
          Length = 234

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606
           A  S L  I+GIG  R + +L           +     S + L ++ G+  K   K+  +
Sbjct: 178 ADLSELQTISGIGQKRAQDILDY-------REANGKFSSVDDLKNVSGVGAKTLEKLKEY 230


>gi|313140334|ref|ZP_07802527.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132844|gb|EFR50461.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 238

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            LD I G+GP+  + +L    ++   +  S + L  + GI  K   KI
Sbjct: 187 QLDSIPGVGPVTAQRILDHRRSIGRFT--SVDQLLDVSGIGAKTLTKI 232


>gi|311064462|ref|YP_003971187.1| hypothetical protein BBPR_1084 [Bifidobacterium bifidum PRL2010]
 gi|310866781|gb|ADP36150.1| Conserved hypothetical protein [Bifidobacterium bifidum PRL2010]
          Length = 270

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            LD I G+GP+  + +L    ++   +  S + L  + GI  K   KI
Sbjct: 219 QLDSIPGVGPVTAQRILDHRRSIGRFT--SVDQLLDVSGIGAKTLTKI 264


>gi|310287549|ref|YP_003938807.1| competence protein ComEA [Bifidobacterium bifidum S17]
 gi|309251485|gb|ADO53233.1| competence protein ComEA [Bifidobacterium bifidum S17]
          Length = 271

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            LD I G+GP+  + +L    ++   +  S + L  + GI  K   KI
Sbjct: 220 QLDSIPGVGPVTAQRILDHRRSIGRFT--SVDQLLDVSGIGAKTLTKI 265


>gi|224283184|ref|ZP_03646506.1| hypothetical protein BbifN4_05079 [Bifidobacterium bifidum NCIMB
           41171]
          Length = 209

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            LD I G+GP+  + +L    ++   +  S + L  + GI  K   KI
Sbjct: 158 QLDSIPGVGPVTAQRILDHRRSIGRFT--SVDQLLDVSGIGAKTLTKI 203


>gi|319956700|ref|YP_004167963.1| php domain protein [Nitratifractor salsuginis DSM 16511]
 gi|319419104|gb|ADV46214.1| PHP domain protein [Nitratifractor salsuginis DSM 16511]
          Length = 578

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 557 LDEINGIGPLRKRLLLQSF--GTVKMISRSSPE-TLASIEGISKKIACKIYN 605
           L +I G+GP + + L +    G+++ + +++ E  +  + G  +K   KI  
Sbjct: 99  LLKIEGLGPKKVKTLYEKLGIGSLEELKKAAEEHKIRELPGFGEKTEEKILK 150


>gi|297621454|ref|YP_003709591.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044]
 gi|297376755|gb|ADI38585.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044]
          Length = 665

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G     LL    G +  + + S E L  I GI +K A  +  +F
Sbjct: 512 GIKYVGAGTAELLANRSGDIDGLKQLSYEELLKINGIGEKAAESVIEYF 560


>gi|269219963|ref|ZP_06163817.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210599|gb|EEZ76939.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 799

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + +  SFG++     +S E +A I+G+ + IA    + F
Sbjct: 635 SIRHVGPTAAKAIASSFGSLSAAREASVEEMAQIDGVGRVIAQSFLDWF 683


>gi|119774653|ref|YP_927393.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
 gi|166216239|sp|A1S5R7|DNLJ_SHEAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|119767153|gb|ABL99723.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
          Length = 681

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L + F +++ I  +  + L  +E +   +A  + + F
Sbjct: 532 VGEATAANLAKHFRSLEAIRDADVDALIQVEDVGTVVAQHVAHFF 576


>gi|15675329|ref|NP_269503.1| putative competence protein [Streptococcus pyogenes M1 GAS]
 gi|19746371|ref|NP_607507.1| competence protein [Streptococcus pyogenes MGAS8232]
 gi|71903805|ref|YP_280608.1| ComE operon protein 1 [Streptococcus pyogenes MGAS6180]
 gi|71910961|ref|YP_282511.1| COME operon protein 1 [Streptococcus pyogenes MGAS5005]
 gi|94988825|ref|YP_596926.1| COME operon protein 1 [Streptococcus pyogenes MGAS9429]
 gi|94990728|ref|YP_598828.1| COME operon protein 1 [Streptococcus pyogenes MGAS10270]
 gi|139473564|ref|YP_001128280.1| competence protein [Streptococcus pyogenes str. Manfredo]
 gi|306827080|ref|ZP_07460377.1| ComE operon protein 1 [Streptococcus pyogenes ATCC 10782]
 gi|13622509|gb|AAK34224.1| putative competence protein [Streptococcus pyogenes M1 GAS]
 gi|19748568|gb|AAL98006.1| putative competence protein [Streptococcus pyogenes MGAS8232]
 gi|71802900|gb|AAX72253.1| ComE operon protein 1 [Streptococcus pyogenes MGAS6180]
 gi|71853743|gb|AAZ51766.1| COME operon protein 1 [Streptococcus pyogenes MGAS5005]
 gi|94542333|gb|ABF32382.1| COME operon protein 1 [Streptococcus pyogenes MGAS9429]
 gi|94544236|gb|ABF34284.1| COME operon protein 1 [Streptococcus pyogenes MGAS10270]
 gi|134271811|emb|CAM30044.1| putative competence protein [Streptococcus pyogenes str. Manfredo]
 gi|304430714|gb|EFM33726.1| ComE operon protein 1 [Streptococcus pyogenes ATCC 10782]
          Length = 220

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA+   L  I GIG  R + ++      G  K +     E L  + GI +K   K+ +
Sbjct: 163 KASLEELQHIPGIGAKRAQDIIDMRDKLGGFKAL-----EDLRQVSGIGEKTLEKLKD 215


>gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52]
 gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52]
          Length = 876

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  H
Sbjct: 192 GVPGIGEKTAVKLLRQFGTVENVL-ASIDEIK-----GEKLKETLRQH 233


>gi|150021611|ref|YP_001306965.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermosipho melanesiensis BI429]
 gi|149794132|gb|ABR31580.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermosipho melanesiensis BI429]
          Length = 184

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 556 PLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L ++ GIG ++ + ++   + FG V+     S E L  ++GI KK   KI    
Sbjct: 133 ELMKLPGIGKVKAQEIIEFRKKFGNVQ-----SFEDLLKVKGIGKKTLEKIKPFI 182



 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S E L  + GI K  A +I   
Sbjct: 125 NINNASVEELMKLPGIGKVKAQEIIEF 151


>gi|119356222|ref|YP_910866.1| DNA protecting protein DprA [Chlorobium phaeobacteroides DSM 266]
 gi|119353571|gb|ABL64442.1| DNA protecting protein DprA [Chlorobium phaeobacteroides DSM 266]
          Length = 381

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +     L +I GIGP R   ++ + G+   +  ++  T   I GI   +A +I +  
Sbjct: 9   SRILLLTLSQIPGIGPARINAIVSNLGSDISVLDATEGTFQHIPGIGVPLAKEIVSFL 66


>gi|303254423|ref|ZP_07340529.1| competence protein CelA [Streptococcus pneumoniae BS455]
 gi|302598590|gb|EFL65630.1| competence protein CelA [Streptococcus pneumoniae BS455]
          Length = 216

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|225854458|ref|YP_002735970.1| competence protein [Streptococcus pneumoniae JJA]
 gi|225723600|gb|ACO19453.1| competence protein [Streptococcus pneumoniae JJA]
          Length = 216

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|221231718|ref|YP_002510870.1| competence protein [Streptococcus pneumoniae ATCC 700669]
 gi|225858747|ref|YP_002740257.1| competence protein [Streptococcus pneumoniae 70585]
 gi|298229852|ref|ZP_06963533.1| competence protein [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254552|ref|ZP_06978138.1| competence protein [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503037|ref|YP_003724977.1| competence protein ComEA [Streptococcus pneumoniae TCH8431/19A]
 gi|220674178|emb|CAR68706.1| putative competence protein [Streptococcus pneumoniae ATCC 700669]
 gi|225720069|gb|ACO15923.1| competence protein [Streptococcus pneumoniae 70585]
 gi|298238632|gb|ADI69763.1| competence protein ComEA [Streptococcus pneumoniae TCH8431/19A]
          Length = 216

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|194397453|ref|YP_002037588.1| competence protein ComEA [Streptococcus pneumoniae G54]
 gi|194357120|gb|ACF55568.1| competence protein (ComEA) [Streptococcus pneumoniae G54]
          Length = 216

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|168485906|ref|ZP_02710414.1| competence protein [Streptococcus pneumoniae CDC1087-00]
 gi|183570977|gb|EDT91505.1| competence protein [Streptococcus pneumoniae CDC1087-00]
          Length = 216

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|148992911|ref|ZP_01822530.1| competence protein CelA [Streptococcus pneumoniae SP9-BS68]
 gi|168490227|ref|ZP_02714426.1| competence protein [Streptococcus pneumoniae SP195]
 gi|147928363|gb|EDK79379.1| competence protein CelA [Streptococcus pneumoniae SP9-BS68]
 gi|183571424|gb|EDT91952.1| competence protein [Streptococcus pneumoniae SP195]
 gi|332073288|gb|EGI83767.1| comEA family protein [Streptococcus pneumoniae GA17570]
          Length = 216

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|148988394|ref|ZP_01819841.1| competence protein CelA [Streptococcus pneumoniae SP6-BS73]
 gi|169833773|ref|YP_001694398.1| competence protein [Streptococcus pneumoniae Hungary19A-6]
 gi|225861158|ref|YP_002742667.1| competence protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|147926075|gb|EDK77149.1| competence protein CelA [Streptococcus pneumoniae SP6-BS73]
 gi|168996275|gb|ACA36887.1| competence protein [Streptococcus pneumoniae Hungary19A-6]
 gi|225727207|gb|ACO23058.1| competence protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389233|gb|EGE87578.1| comEA family protein [Streptococcus pneumoniae GA04375]
          Length = 216

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|149006370|ref|ZP_01830082.1| competence protein CelA [Streptococcus pneumoniae SP18-BS74]
 gi|168494383|ref|ZP_02718526.1| competence protein [Streptococcus pneumoniae CDC3059-06]
 gi|147762147|gb|EDK69109.1| competence protein CelA [Streptococcus pneumoniae SP18-BS74]
 gi|183575677|gb|EDT96205.1| competence protein [Streptococcus pneumoniae CDC3059-06]
          Length = 216

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|3211753|gb|AAC23741.1| competence protein [Streptococcus pneumoniae]
          Length = 216

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|15902900|ref|NP_358450.1| competence protein CelA [Streptococcus pneumoniae R6]
 gi|116516340|ref|YP_816325.1| competence protein CelA [Streptococcus pneumoniae D39]
 gi|149002504|ref|ZP_01827438.1| competence protein CelA [Streptococcus pneumoniae SP14-BS69]
 gi|237650509|ref|ZP_04524761.1| competence protein [Streptococcus pneumoniae CCRI 1974]
 gi|237820823|ref|ZP_04596668.1| competence protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|307127495|ref|YP_003879526.1| competence protein [Streptococcus pneumoniae 670-6B]
 gi|15458459|gb|AAK99660.1| Competence protein [Streptococcus pneumoniae R6]
 gi|116076916|gb|ABJ54636.1| competence protein CelA [Streptococcus pneumoniae D39]
 gi|147759441|gb|EDK66433.1| competence protein CelA [Streptococcus pneumoniae SP14-BS69]
 gi|306484557|gb|ADM91426.1| competence protein [Streptococcus pneumoniae 670-6B]
 gi|332075570|gb|EGI86038.1| comEA family protein [Streptococcus pneumoniae GA17545]
 gi|332076229|gb|EGI86695.1| comEA family protein [Streptococcus pneumoniae GA41301]
          Length = 216

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|58617393|ref|YP_196592.1| DNA repair protein radC-like protein [Ehrlichia ruminantium str.
           Gardel]
 gi|58417005|emb|CAI28118.1| DNA repair protein radC homolog [Ehrlichia ruminantium str. Gardel]
          Length = 230

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 26/82 (31%)

Query: 544 THRKRRKKAAYS----------PLDEI-----NGIGPLRK------RLLLQSFGTVKMIS 582
            HRKR +K   S           L+ I           RK      + L++ FGT   + 
Sbjct: 13  GHRKRVRKKLLSGGSKGLLDYEILEVILYSSYP-----RKDVKPLAKRLIKHFGTFAKVF 67

Query: 583 RSSPETLASIEGISKKIACKIY 604
            +    L  + GI +  A  I+
Sbjct: 68  FADFNQLKEVPGIGEASASAIF 89


>gi|15900831|ref|NP_345435.1| competence protein CelA [Streptococcus pneumoniae TIGR4]
 gi|111658045|ref|ZP_01408747.1| hypothetical protein SpneT_02000778 [Streptococcus pneumoniae
           TIGR4]
 gi|149010400|ref|ZP_01831771.1| competence protein CelA [Streptococcus pneumoniae SP19-BS75]
 gi|182683900|ref|YP_001835647.1| competence protein CelA [Streptococcus pneumoniae CGSP14]
 gi|303259866|ref|ZP_07345841.1| competence protein CelA [Streptococcus pneumoniae SP-BS293]
 gi|303262280|ref|ZP_07348224.1| competence protein CelA [Streptococcus pneumoniae SP14-BS292]
 gi|303264702|ref|ZP_07350620.1| competence protein CelA [Streptococcus pneumoniae BS397]
 gi|303267231|ref|ZP_07353096.1| competence protein CelA [Streptococcus pneumoniae BS457]
 gi|303269517|ref|ZP_07355282.1| competence protein CelA [Streptococcus pneumoniae BS458]
 gi|14972428|gb|AAK75075.1| competence protein CelA [Streptococcus pneumoniae TIGR4]
 gi|147764881|gb|EDK71810.1| competence protein CelA [Streptococcus pneumoniae SP19-BS75]
 gi|182629234|gb|ACB90182.1| competence protein CelA [Streptococcus pneumoniae CGSP14]
 gi|302636603|gb|EFL67094.1| competence protein CelA [Streptococcus pneumoniae SP14-BS292]
 gi|302639071|gb|EFL69531.1| competence protein CelA [Streptococcus pneumoniae SP-BS293]
 gi|302640953|gb|EFL71335.1| competence protein CelA [Streptococcus pneumoniae BS458]
 gi|302643240|gb|EFL73522.1| competence protein CelA [Streptococcus pneumoniae BS457]
 gi|302645789|gb|EFL76018.1| competence protein CelA [Streptococcus pneumoniae BS397]
          Length = 216

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDH-------REANGKFKSVDELKKVSGIGGKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|296876842|ref|ZP_06900890.1| competence protein CelA [Streptococcus parasanguinis ATCC 15912]
 gi|296432344|gb|EFH18143.1| competence protein CelA [Streptococcus parasanguinis ATCC 15912]
          Length = 222

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           +A  + L  ++GIG  R + ++           +     S + L ++ GI +K   K+ +
Sbjct: 165 RATETELQTVSGIGQKRAQDIIAY-------REANGPFRSVDDLKNVSGIGEKTLEKLRD 217

Query: 606 HF 607
            F
Sbjct: 218 AF 219


>gi|315231273|ref|YP_004071709.1| ski2-type helicase [Thermococcus barophilus MP]
 gi|315184301|gb|ADT84486.1| putative ski2-type helicase [Thermococcus barophilus MP]
          Length = 755

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 563 IGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           IG  R R L  + F  V  I ++ P  L ++EGI  K+  +IY HF
Sbjct: 674 IGRRRARALYNAGFKNVNDIVKAKPSELLAVEGIGVKVLERIYRHF 719


>gi|332359434|gb|EGJ37254.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK355]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|328946560|gb|EGG40699.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1087]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|327489925|gb|EGF21714.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1058]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|327474802|gb|EGF20207.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK408]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|327470726|gb|EGF16182.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK330]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|327461089|gb|EGF07422.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1057]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|325696052|gb|EGD37943.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK160]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|325694926|gb|EGD36831.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK150]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|325690880|gb|EGD32881.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK115]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|325687188|gb|EGD29210.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK72]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|324991571|gb|EGC23504.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK353]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|323351288|ref|ZP_08086944.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
 gi|322122512|gb|EFX94223.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA  ++ +F +  S 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPKLSQASQEEIAAIDSLGTVIAQSLHTYFEQEGSQ 556


>gi|78188256|ref|YP_378594.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
 gi|123743484|sp|Q3ATX4|DNLJ_CHLCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78170455|gb|ABB27551.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
          Length = 667

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 28/105 (26%)

Query: 527 LYFIQR-----------------LR--DEAHRFAITTHRKRRKKAAYSPLDEINGIGPLR 567
           LY +Q                  +R  DE+        R R        L  I  +G   
Sbjct: 473 LYLLQEPQLERMERMGKKSAQNLIRALDES--------RTRSYDRLLYAL-GIRHVGRAT 523

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            R L  +F T+  + +++ E LA +  I   +A  I + F K +S
Sbjct: 524 ARELAHAFPTLDALMQANEERLAEVPDIGTTVAQSIVDFFAKPSS 568


>gi|307546309|ref|YP_003898788.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
 gi|307218333|emb|CBV43603.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
          Length = 700

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 22/47 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L + FGT++ +  +  + L  ++ +   +A  ++  F +
Sbjct: 543 VGEATAANLARHFGTLEALMDAERDALEQVDDVGPIVAAHVHTFFRQ 589


>gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3]
 gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3]
          Length = 876

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  H
Sbjct: 192 GVPGIGEKTAVKLLRQFGTVENVL-ASIDEIK-----GEKLKETLRQH 233


>gi|258651107|ref|YP_003200263.1| DNA integrity scanning protein DisA [Nakamurella multipartita DSM
           44233]
 gi|258554332|gb|ACV77274.1| protein of unknown function DUF147 [Nakamurella multipartita DSM
           44233]
          Length = 362

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  I  + P     L+Q FG ++ +  ++   L +++G+ +  A  +    
Sbjct: 296 LSGIPRVPPAVLDRLIQHFGNLQGLLAATAADLQAVDGVGEARARVVREGL 346


>gi|118576895|ref|YP_876638.1| superfamily II helicase [Cenarchaeum symbiosum A]
 gi|118195416|gb|ABK78334.1| superfamily II helicase [Cenarchaeum symbiosum A]
          Length = 707

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKM---ISRSSPETLASIEGISKKIACKIYNHF 607
           KA   PL  I GIG +R R L +  G +K    ++    E L+ +EGI   +A  I +  
Sbjct: 646 KAELVPLVSIKGIGRVRSRRLFR--GGIKGPGDLAAVPVERLSRVEGIGATLANNIKSQL 703

Query: 608 HK 609
            K
Sbjct: 704 RK 705


>gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426]
 gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426]
          Length = 878

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  H
Sbjct: 194 GVPGIGEKTAVKLLRQFGTVENVL-ASIDEIK-----GEKLKETLRQH 235


>gi|332880018|ref|ZP_08447702.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682014|gb|EGJ54927.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 663

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 23/45 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + + T++ +  ++ E L  ++ I  +IA  + + F
Sbjct: 512 VGETVAKKLARHYKTIEALEAATIEQLIEVDEIGNQIASSVVSFF 556


>gi|332373636|gb|AEE61959.1| unknown [Dendroctonus ponderosae]
          Length = 241

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           L  I  I       LL  F T++ I R+S   L+S  G+  + A +++    +N
Sbjct: 185 LTAIKPINKTDAMNLLTRFKTLEGIIRASESQLSSCPGLGPRKAKRLFKVLREN 238


>gi|261409953|ref|YP_003246194.1| Excinuclease ABC subunit C domain-containing protein [Paenibacillus
           sp. Y412MC10]
 gi|261286416|gb|ACX68387.1| Excinuclease ABC C subunit domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 118

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +    +L+VGKA  L+ RIK +   +    +     +++ +I   V    V   
Sbjct: 39  GIFMFYNSKEELLFVGKARKLRPRIKKHFEDSVSPIKEHR--NEVTSIEVCVIEDAVHRE 96

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I   K ++N+
Sbjct: 97  IYETYIINEFKAKYNV 112


>gi|159040904|ref|YP_001540156.1| DEAD/DEAH box helicase domain-containing protein [Caldivirga
           maquilingensis IC-167]
 gi|226740604|sp|A8MB76|HELS_CALMQ RecName: Full=Putative ski2-type helicase
 gi|157919739|gb|ABW01166.1| DEAD/DEAH box helicase domain protein [Caldivirga maquilingensis
           IC-167]
          Length = 756

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            + G+G +R R L  + + +++ +++++   L  I GI  KIA  I    H+
Sbjct: 674 NLEGVGRVRARALYAAGYRSIEDLAKANVSDLTRIRGIGDKIAGSIIEQAHQ 725


>gi|78043654|ref|YP_360397.1| DNA polymerase family X protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995769|gb|ABB14668.1| DNA polymerase, X family [Carboxydothermus hydrogenoformans Z-2901]
          Length = 550

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 14/67 (20%)

Query: 556 PLDEINGIGPLRKRLLLQSF-----GTVKMISRSSPE------TLASIEGISKKIACKIY 604
            L+E+ GIG   +  +L+ +     G  + +     E       L  I GI  K A +IY
Sbjct: 51  RLEELPGIGKNLREKILEFYRTGRIGEYEKLRE---EIPLIIFDLLKIPGIGVKTAKQIY 107

Query: 605 NHFHKNT 611
             +  NT
Sbjct: 108 ETYRPNT 114



 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISR-SSPETLASIEGISKKIACKIY 604
           L +I GIG    + + +++   T+  +   +    L  I GI  K   +I 
Sbjct: 92  LLKIPGIGVKTAKQIYETYRPNTLDEVESLAKAHKLKEIPGIGSKTEQQIL 142


>gi|60681965|ref|YP_212109.1| putative DNA ligase [Bacteroides fragilis NCTC 9343]
 gi|81314971|sp|Q5LCI0|DNLJ_BACFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|60493399|emb|CAH08185.1| putative DNA ligase [Bacteroides fragilis NCTC 9343]
          Length = 665

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  ++ +  +  ETL +I+ I +KIA  I N+F   ++
Sbjct: 515 VGETVAKKIAKSFKDIEELENADLETLINIDEIGEKIARSILNYFANESN 564


>gi|56421153|ref|YP_148471.1| DNA repair protein RadC [Geobacillus kaustophilus HTA426]
 gi|73913735|sp|Q5KWN3|Y2618_GEOKA RecName: Full=UPF0758 protein GK2618
 gi|56380995|dbj|BAD76903.1| DNA repair protein [Geobacillus kaustophilus HTA426]
          Length = 226

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL+ F  ++ +  ++ E + +I+GI    A +I    
Sbjct: 50  QRLLRHFEGLRPLKDATVEEMTNIKGIGPTKAVQILAAL 88


>gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I
 gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
          Length = 877

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  H
Sbjct: 192 GVPGIGEKTAVKLLRQFGTVENVL-ASIDEIK-----GEKLKETLRQH 233


>gi|253565642|ref|ZP_04843097.1| DNA ligase [Bacteroides sp. 3_2_5]
 gi|251945921|gb|EES86328.1| DNA ligase [Bacteroides sp. 3_2_5]
          Length = 665

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  ++ +  +  ETL +I+ I +KIA  I N+F   ++
Sbjct: 515 VGETVAKKIAKSFKDIEELENADLETLINIDEIGEKIARSILNYFANESN 564


>gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)]
          Length = 876

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGTV+ +  +S + +       +K+   +  H
Sbjct: 192 GVPGIGEKTAVKLLRQFGTVENVL-ASIDEIK-----GEKLKETLRQH 233


>gi|83647417|ref|YP_435852.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
 gi|123767368|sp|Q2SD47|DNLJ_HAHCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83635460|gb|ABC31427.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
          Length = 683

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G    ++L Q F T+ ++ +++ E L     I    A  I + F + 
Sbjct: 525 VGEATAKVLAQHFPTLDLLKQATEEDLVEAPDIGPISAGHIRSFFQQE 572


>gi|21910610|ref|NP_664878.1| putative competence protein [Streptococcus pyogenes MGAS315]
 gi|28895701|ref|NP_802051.1| competence protein [Streptococcus pyogenes SSI-1]
 gi|94994651|ref|YP_602749.1| COME operon protein 1 [Streptococcus pyogenes MGAS10750]
 gi|21904811|gb|AAM79681.1| putative competence protein [Streptococcus pyogenes MGAS315]
 gi|28810950|dbj|BAC63884.1| putative competence protein [Streptococcus pyogenes SSI-1]
 gi|94548159|gb|ABF38205.1| COME operon protein 1 [Streptococcus pyogenes MGAS10750]
          Length = 220

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA+   L  I GIG  R + ++      G  K +     E L  + GI +K   K+ +
Sbjct: 163 KASLEELQHIPGIGAKRAQDIIDMRDKLGGFKAL-----EDLRQVSGIGEKTLEKLKD 215


>gi|265764018|ref|ZP_06092586.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16]
 gi|263256626|gb|EEZ27972.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16]
          Length = 665

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  ++ +  +  ETL +I+ I +KIA  I N+F   ++
Sbjct: 515 VGETVAKKIAKSFKDIEELENADLETLINIDEIGEKIARSILNYFANESN 564


>gi|297544588|ref|YP_003676890.1| hypothetical protein Tmath_1161 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842363|gb|ADH60879.1| conserved hypothetical protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 389

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKI 599
           PL+ I  IG      L+  FG+ +  +  ++ E L  + G S  +
Sbjct: 319 PLEFIPNIGKKSIEKLVNYFGSELYALHEAAYEELEKVVGTSNAL 363


>gi|238897965|ref|YP_002923645.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|257096312|sp|C4K4K4|DNLJ_HAMD5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|229465723|gb|ACQ67497.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 702

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K+ +K  ++       I  +G      L   FG + ++ ++  ETL  +  + + +A  +
Sbjct: 527 KKSQKTTFARFLYALGIREVGETTAANLALYFGQLDLLRKADIETLKKVPDVGEVVAKNL 586

Query: 604 YNHFHKN 610
            + F   
Sbjct: 587 VDFFGNE 593


>gi|225451021|ref|XP_002281063.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 452

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I  +S E LA   GI ++   ++Y+ FH+
Sbjct: 318 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 352


>gi|301163404|emb|CBW22954.1| putative DNA ligase [Bacteroides fragilis 638R]
          Length = 665

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  ++ +  +  ETL +I+ I +KIA  I N+F   ++
Sbjct: 515 VGETVAKKIAKSFKDIEELENADLETLINIDEIGEKIARSILNYFANESN 564


>gi|253988889|ref|YP_003040245.1| NAD-dependent DNA ligase LigA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780339|emb|CAQ83500.1| DNA ligase [Photorhabdus asymbiotica]
          Length = 672

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FG +  +  +  E L  ++ + + +A  + + F++
Sbjct: 520 VGEATAANLAAYFGDLNKLRAADEEALKEVQDVGEVVAKHVVHFFNE 566


>gi|225572684|ref|ZP_03781439.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039920|gb|EEG50166.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM
           10507]
          Length = 622

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           K  YS    I  IG    +++ + F   ++ +  +S + ++ I+GI   IA  +      
Sbjct: 462 KMIYS--LGIPNIGLANAKVICRHFDYDLERLKNASEDEVSGIDGIGPVIAKNLVRFLEN 519

Query: 610 NTSH 613
             + 
Sbjct: 520 EENQ 523


>gi|53713694|ref|YP_099686.1| DNA ligase [Bacteroides fragilis YCH46]
 gi|81382396|sp|Q64TM7|DNLJ_BACFR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|52216559|dbj|BAD49152.1| DNA ligase [Bacteroides fragilis YCH46]
          Length = 665

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  ++ +  +  ETL +I+ I +KIA  I N+F   ++
Sbjct: 515 VGETVAKKIAKSFKDIEELENADLETLINIDEIGEKIARSILNYFANESN 564


>gi|316973744|gb|EFV57303.1| DNA excision repair protein ERCC-1 [Trichinella spiralis]
          Length = 340

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 563 IGPLRKR---LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I P+ K     L+  FG+++ I+ ++ E L+   G+ ++ A K++  F K
Sbjct: 264 IKPITKTDADSLIDMFGSLRKIAEATEEELSLCPGMGRRKAKKLHEGFAK 313


>gi|288870885|ref|ZP_06115627.2| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479]
 gi|288865557|gb|EFC97855.1| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479]
          Length = 645

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
            I+GIG    ++L + F      +  ++ E L  ++GI   +A     +F  +  +  T
Sbjct: 490 GISGIGLANAKMLCRKFKFDFDRMRHATAEELVEVDGIGAVLADAWIRYF-ADEKNQET 547


>gi|256959858|ref|ZP_05564029.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
 gi|293385046|ref|ZP_06630880.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
 gi|293389317|ref|ZP_06633778.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
 gi|312906035|ref|ZP_07765048.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
 gi|312909381|ref|ZP_07768237.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
 gi|256950354|gb|EEU66986.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
 gi|291077724|gb|EFE15088.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
 gi|291081339|gb|EFE18302.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
 gi|310628030|gb|EFQ11313.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
 gi|311290405|gb|EFQ68961.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
          Length = 676

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +SR++ E + +++ I + IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLSTLSRATAEEIVALDSIGEIIADSVVTYFENEE 568


>gi|289578308|ref|YP_003476935.1| hypothetical protein Thit_1106 [Thermoanaerobacter italicus Ab9]
 gi|289528021|gb|ADD02373.1| conserved hypothetical protein [Thermoanaerobacter italicus Ab9]
          Length = 389

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKI 599
           PL+ I  IG      L+  FG+ +  +  ++ E L  + G S  +
Sbjct: 319 PLEFIPNIGKKSIEKLVNYFGSELYALHEAAYEELEKVVGTSNAL 363


>gi|209559639|ref|YP_002286111.1| Putative competence protein [Streptococcus pyogenes NZ131]
 gi|209540840|gb|ACI61416.1| Putative competence protein [Streptococcus pyogenes NZ131]
          Length = 220

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA+   L  I GIG  R + ++      G  K +     E L  + GI +K   K+ +
Sbjct: 163 KASLEELQHIPGIGAKRAQDIIDMRDKLGGFKAL-----EDLRQVSGIGEKTLEKLKD 215


>gi|167040191|ref|YP_001663176.1| hypothetical protein Teth514_1553 [Thermoanaerobacter sp. X514]
 gi|300914275|ref|ZP_07131591.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
 gi|307724489|ref|YP_003904240.1| hypothetical protein Thet_1349 [Thermoanaerobacter sp. X513]
 gi|166854431|gb|ABY92840.1| conserved hypothetical protein [Thermoanaerobacter sp. X514]
 gi|300889210|gb|EFK84356.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
 gi|307581550|gb|ADN54949.1| hypothetical protein Thet_1349 [Thermoanaerobacter sp. X513]
          Length = 390

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKI 599
           PL+ I  IG      L+  FG+ +  +  ++ E L  + G S  +
Sbjct: 320 PLEFIPNIGKKSIEKLVNYFGSELYALHEAAYEELEKVVGTSNAL 364


>gi|16331955|ref|NP_442683.1| hypothetical protein sll0664 [Synechocystis sp. PCC 6803]
 gi|1006601|dbj|BAA10754.1| sll0664 [Synechocystis sp. PCC 6803]
          Length = 306

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 3  SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIR--F 60
           + +P   G+Y ++D    V YVGKA N++ R        +H         + +     +
Sbjct: 18 KDNLPIFSGIYYVVDEQNLVWYVGKAKNIRNR----WQGKSHHRFFQLESQKNHYFSIYY 73

Query: 61 TVTCTEVE-ALLLEANMIKRLKPRFN 85
           +   E+E A + E   I++  P+ N
Sbjct: 74 RIVD-EIELAKI-EKEEIEKYTPQLN 97


>gi|227328979|ref|ZP_03833003.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 684

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   FG+++ +  +  + L  +  + K +A  + +   +  + T
Sbjct: 530 VGESTAANLAAHFGSLEALFAADEDALLEVPDVGKVVAAHVRHFLEEEHNQT 581


>gi|227114832|ref|ZP_03828488.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 684

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   FG+++ +  +  + L  +  + K +A  + +   +  + T
Sbjct: 530 VGESTAANLAAHFGSLEALFAADEDALLEVPDVGKVVAAHVRHFLEEEHNQT 581


>gi|304398312|ref|ZP_07380186.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
 gi|304354178|gb|EFM18551.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
          Length = 672

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FG ++ +  +  E L ++  + K +A  + N   + ++
Sbjct: 520 VGEATAANLANHFGELQKVMDADLEALIAVPDVGKVVATHVRNFMEEESN 569


>gi|282899795|ref|ZP_06307757.1| hypothetical protein CRC_01662 [Cylindrospermopsis raciborskii
          CS-505]
 gi|282901895|ref|ZP_06309798.1| hypothetical protein CRC_03337 [Cylindrospermopsis raciborskii
          CS-505]
 gi|281193233|gb|EFA68227.1| hypothetical protein CRC_03337 [Cylindrospermopsis raciborskii
          CS-505]
 gi|281195277|gb|EFA70212.1| hypothetical protein CRC_01662 [Cylindrospermopsis raciborskii
          CS-505]
          Length = 114

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 6  MPECPGVYQ-MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
          +P   GVY    D    +LYVG + N++KR         H ++   + +  N I   V  
Sbjct: 12 LPNTSGVYYVYKDYD--LLYVGSSSNIRKR----FMK-GHNYQNKFIEAGANLISCVVCE 64

Query: 65 TEVEALLLEANMIKRLKPRFNI 86
             E   LE   I RLKP+ N 
Sbjct: 65 NYAE---LELQEILRLKPKMNR 83


>gi|229825369|ref|ZP_04451438.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC
           49176]
 gi|229790373|gb|EEP26487.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC
           49176]
          Length = 664

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 559 EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    +L+ + F      I ++  E L  I+GI + +A     +F+K+ +
Sbjct: 497 GIANIGLATAKLICRYFNNDFDKIIKAKEEELTQIDGIGEVMAKVFAEYFNKDEN 551


>gi|229156711|ref|ZP_04284798.1| hypothetical protein bcere0010_28960 [Bacillus cereus ATCC 4342]
 gi|228626631|gb|EEK83371.1| hypothetical protein bcere0010_28960 [Bacillus cereus ATCC 4342]
          Length = 213

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 23/34 (67%)

Query: 8  ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          +  G+Y + D    ++Y+GKA++++ R+ ++ +S
Sbjct: 19 DDSGIYFIKDYNDNIIYIGKAFSIKSRVLAHFNS 52


>gi|226596530|ref|YP_002791886.1| hypothetical protein HRPV-1_gp1 [Halorubrum pleomorphic virus 1]
 gi|226427412|gb|ACO54896.1| ORF1 [Halorubrum pleomorphic virus 1]
          Length = 500

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           L E+ G+G  +   L    G  T+  +  +S + +ASI+GIS+  A K+ +
Sbjct: 411 LQEVPGLGETKLDRLEAH-GIQTLSDVRLASVDEIASIDGISESFAEKLKD 460


>gi|158319509|ref|YP_001512016.1| DNA integrity scanning protein DisA [Alkaliphilus oremlandii
           OhILAs]
 gi|158139708|gb|ABW18020.1| protein of unknown function DUF147 [Alkaliphilus oremlandii OhILAs]
          Length = 358

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            LL+ F + + I ++S E L  ++GI +  A  I +   +
Sbjct: 308 NLLKQFISFQKILKASTEQLDDVDGIGEARARAIKDGLRR 347


>gi|238799224|ref|ZP_04642672.1| DNA ligase [Yersinia mollaretii ATCC 43969]
 gi|238716921|gb|EEQ08789.1| DNA ligase [Yersinia mollaretii ATCC 43969]
          Length = 670

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 18/48 (37%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F  +  +  +  + L S+  + + +A  + N   + 
Sbjct: 520 VGEATAANLAAHFRNMANLRAADIDALKSVPDVGEVVAKHVLNFLSEE 567


>gi|126651411|ref|ZP_01723615.1| YqxK [Bacillus sp. B14905]
 gi|126591664|gb|EAZ85760.1| YqxK [Bacillus sp. B14905]
          Length = 390

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603
           PLD I GIGP     LLQ+FGT   I  R + E L  I  + +K+A  I
Sbjct: 320 PLDFIPGIGPKMMERLLQAFGTEMNILHRVTIEQLEQI--VPQKMAKLI 366


>gi|229148695|ref|ZP_04276945.1| DNA ligase [Bacillus cereus m1550]
 gi|228634703|gb|EEK91282.1| DNA ligase [Bacillus cereus m1550]
          Length = 669

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L+       I  +G    R   + F T+  + +++ E L +I  I +K+A  + 
Sbjct: 498 KSKENSLERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVV 557

Query: 605 NHFHKNT 611
            +F    
Sbjct: 558 TYFDNED 564


>gi|121535766|ref|ZP_01667568.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1]
 gi|121305665|gb|EAX46605.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1]
          Length = 395

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PL+ + G+G      LL  FG+ ++++  +S   +A++  I +K+A +I
Sbjct: 325 PLEFVPGLGRKLLEKLLDRFGSEMRILHTASLAEIAAV--IGEKLAVEI 371


>gi|57239372|ref|YP_180508.1| DNA repair protein radC-like protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579339|ref|YP_197551.1| DNA repair protein radC-like protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161451|emb|CAH58376.1| DNA repair protein RadC [Ehrlichia ruminantium str. Welgevonden]
 gi|58417965|emb|CAI27169.1| DNA repair protein radC homolog [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 230

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 18/78 (23%)

Query: 544 THRKRRKKAAYS----------PLDEI-------NGIGPLRKRLLLQSFGTVKMISRSSP 586
            HRKR +K   S           L+ I         + P   + L++ FGT   +  +  
Sbjct: 13  GHRKRVRKKLLSGGSKGLLDYEILEVILYSSYPRKDVKP-LAKRLIKHFGTFAKVFFADF 71

Query: 587 ETLASIEGISKKIACKIY 604
             L  + GI +  A  I+
Sbjct: 72  NQLKEVPGIGEASASAIF 89


>gi|302876559|ref|YP_003845192.1| DNA integrity scanning, DisA, linker region [Clostridium
           cellulovorans 743B]
 gi|307687231|ref|ZP_07629677.1| DNA integrity scanning protein DisA [Clostridium cellulovorans
           743B]
 gi|302579416|gb|ADL53428.1| DNA integrity scanning, DisA, linker region [Clostridium
           cellulovorans 743B]
          Length = 357

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+ SF   + I ++S E L  +EGI +  A  I N   +
Sbjct: 305 INNLVNSFDNFQEILKASIEDLDKVEGIGEARAKAIKNGLRR 346


>gi|294495240|ref|YP_003541733.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
 gi|292666239|gb|ADE36088.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 729

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            L EI  +G  R R L +  + + + ++ +  + LA I G   KIA KI ++  + T  
Sbjct: 651 ELVEIPNVGRARARKLFKKGYRSRQKLATADEKQLAGIVG--PKIAQKILSYLGRETDS 707


>gi|206581932|pdb|3CMA|Y Chain Y, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|206581965|pdb|3CME|Y Chain Y, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
           Ribosomal Subunit Of Haloarcula Marismortui
          Length = 240

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + L +I+G+GP +   L ++ F +V+ +  +    LA + GI   +A +I  
Sbjct: 15  TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKA 66


>gi|282882711|ref|ZP_06291318.1| late competence protein [Peptoniphilus lacrimalis 315-B]
 gi|281297372|gb|EFA89861.1| late competence protein [Peptoniphilus lacrimalis 315-B]
          Length = 204

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A+   L +I G+GP     ++      +     S E L +++GI  K   K+ ++ 
Sbjct: 149 ASKDELMKIPGVGPKTADKIIDY---REKFQFKSVEDLKNVDGIGDKKFEKLKDYL 201



 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++ +S + L  I G+  K A KI ++
Sbjct: 145 NLNSASKDELMKIPGVGPKTADKIIDY 171


>gi|240145659|ref|ZP_04744260.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
 gi|257202247|gb|EEV00532.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
          Length = 671

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    + +++ F ++  +  +  + L  ++ + +  A  I+  FH   +
Sbjct: 513 GIPNVGKAAAKTIMKRFPSILDLEDADRDALMEVDDVGEVSADCIFRFFHDEKN 566


>gi|15825966|pdb|1JJ2|X Chain X, Fully Refined Crystal Structure Of The Haloarcula
           Marismortui Large Ribosomal Subunit At 2.4 Angstrom
           Resolution
 gi|20151011|pdb|1KQS|X Chain X, The Haloarcula Marismortui 50s Complexed With A
           Pretranslocational Intermediate In Protein Synthesis
 gi|22218945|pdb|1K8A|Z Chain Z, Co-Crystal Structure Of Carbomycin A Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|22218979|pdb|1K9M|Z Chain Z, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
           Subunit Of Haloarcula Marismortui
 gi|22219022|pdb|1KD1|Z Chain Z, Co-Crystal Structure Of Spiramycin Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|22219349|pdb|1M1K|Z Chain Z, Co-Crystal Structure Of Azithromycin Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|24159044|pdb|1M90|Z Chain Z, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
           Sparsomycin Bound To The 50s Ribosomal Subunit
 gi|34811141|pdb|1K73|Z Chain Z, Co-Crystal Structure Of Anisomycin Bound To The 50s
           Ribosomal Subunit
 gi|34811171|pdb|1KC8|Z Chain Z, Co-Crystal Structure Of Blasticidin S Bound To The 50s
           Ribosomal Subunit
 gi|34811210|pdb|1N8R|Z Chain Z, Structure Of Large Ribosomal Subunit In Complex With
           Virginiamycin M
 gi|34811240|pdb|1NJI|Z Chain Z, Structure Of Chloramphenicol Bound To The 50s Ribosomal
           Subunit
 gi|37927924|pdb|1Q7Y|Z Chain Z, Crystal Structure Of Ccdap-Puromycin Bound At The Peptidyl
           Transferase Center Of The 50s Ribosomal Subunit
 gi|37927959|pdb|1Q81|Z Chain Z, Crystal Structure Of Minihelix With 3' Puromycin Bound To
           A- Site Of The 50s Ribosomal Subunit.
 gi|37927995|pdb|1Q82|Z Chain Z, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
           The 50s Ribosomal Subunit
 gi|37928031|pdb|1Q86|Z Chain Z, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
           Simultaneously At Half Occupancy To Both The A-Site And
           P- Site Of The The 50s Ribosomal Subunit.
 gi|39654696|pdb|1QVF|X Chain X, Structure Of A Deacylated Trna Minihelix Bound To The E
           Site Of The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|39654729|pdb|1QVG|X Chain X, Structure Of Cca Oligonucleotide Bound To The Trna Binding
           Sites Of The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|55670559|pdb|1W2B|X Chain X, Trigger Factor Ribosome Binding Domain In Complex With 50s
 gi|228311935|pdb|3CXC|X Chain X, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
           To The 50s Ribosomal Subunit Of H. Marismortui
          Length = 240

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + L +I+G+GP +   L ++ F +V+ +  +    LA + GI   +A +I  
Sbjct: 14  TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKA 65


>gi|55378369|ref|YP_136219.1| 50S ribosomal protein L32e [Haloarcula marismortui ATCC 43049]
 gi|132885|sp|P12736|RL32_HALMA RecName: Full=50S ribosomal protein L32e; AltName: Full=Hl5
 gi|50513494|pdb|1S72|Y Chain Y, Refined Crystal Structure Of The Haloarcula Marismortui
           Large Ribosomal Subunit At 2.4 Angstrom Resolution
 gi|66360808|pdb|1YHQ|Y Chain Y, Crystal Structure Of Azithromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360841|pdb|1YI2|Y Chain Y, Crystal Structure Of Erythromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360874|pdb|1YIJ|Y Chain Y, Crystal Structure Of Telithromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360907|pdb|1YIT|Y Chain Y, Crystal Structure Of Virginiamycin M And S Bound To The
           50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360940|pdb|1YJ9|Y Chain Y, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
           Haloarcula Marismortui Containing A Three Residue
           Deletion In L22
 gi|66360973|pdb|1YJN|Y Chain Y, Crystal Structure Of Clindamycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66361006|pdb|1YJW|Y Chain Y, Crystal Structure Of Quinupristin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753149|pdb|1VQ4|Y Chain Y, The Structure Of The Transition State Analogue "daa" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753181|pdb|1VQ5|Y Chain Y, The Structure Of The Transition State Analogue "raa" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753213|pdb|1VQ6|Y Chain Y, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753245|pdb|1VQ7|Y Chain Y, The Structure Of The Transition State Analogue "dca" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753276|pdb|1VQ8|Y Chain Y, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
           Sparsomycin Bound To The Large Ribosomal Subunit Of
           Haloarcula Marismortui
 gi|83753308|pdb|1VQ9|Y Chain Y, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
           Sparsomycin Bound To The Large Ribosomal Subunit Of
           Haloarcula Marismortui
 gi|83753339|pdb|1VQK|Y Chain Y, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
           The Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753370|pdb|1VQL|Y Chain Y, The Structure Of The Transition State Analogue "dcsn"
           Bound To The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|83753401|pdb|1VQM|Y Chain Y, The Structure Of The Transition State Analogue "dan" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753433|pdb|1VQN|Y Chain Y, The Structure Of Cc-Hpmn And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753464|pdb|1VQO|Y Chain Y, The Structure Of Ccpmn Bound To The Large Ribosomal
           Subunit Haloarcula Marismortui
 gi|83753496|pdb|1VQP|Y Chain Y, The Structure Of The Transition State Analogue "rap" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|145580196|pdb|2OTJ|Y Chain Y, 13-Deoxytedanolide Bound To The Large Subunit Of
           Haloarcula Marismortui
 gi|145580227|pdb|2OTL|Y Chain Y, Girodazole Bound To The Large Subunit Of Haloarcula
           Marismortui
 gi|171848861|pdb|2QA4|Y Chain Y, A More Complete Structure Of The The L7L12 STALK OF THE
           Haloarcula Marismortui 50s Large Ribosomal Subunit
 gi|188596026|pdb|3CC2|Y Chain Y, The Refined Crystal Structure Of The Haloarcula
           Marismortui Large Ribosomal Subunit At 2.4 Angstrom
           Resolution With Rrna Sequence For The 23s Rrna And
           Genome-Derived Sequences For R-Proteins
 gi|188596057|pdb|3CC4|Y Chain Y, Co-Crystal Structure Of Anisomycin Bound To The 50s
           Ribosomal Subunit
 gi|188596088|pdb|3CC7|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation C2487u
 gi|188596119|pdb|3CCE|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation U2535a
 gi|188596150|pdb|3CCJ|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation C2534u
 gi|188596181|pdb|3CCL|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation U2535c. Density For Anisomycin Is
           Visible But Not Included In Model.
 gi|188596212|pdb|3CCM|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2611u
 gi|188596243|pdb|3CCQ|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation A2488u
 gi|188596274|pdb|3CCR|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation A2488c. Density For Anisomycin Is
           Visible But Not Included In The Model.
 gi|188596305|pdb|3CCS|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2482a
 gi|188596336|pdb|3CCU|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2482c
 gi|188596367|pdb|3CCV|Y Chain Y, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2616a
 gi|188596398|pdb|3CD6|Y Chain Y, Co-Cystal Of Large Ribosomal Subunit Mutant G2616a With
           Cc- Puromycin
 gi|194368728|pdb|3CPW|X Chain X, The Structure Of The Antibiotic Linezolid Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|208435518|pdb|2QEX|Y Chain Y, Negamycin Binds To The Wall Of The Nascent Chain Exit
           Tunnel Of The 50s Ribosomal Subunit
 gi|290790060|pdb|3I55|Y Chain Y, Co-Crystal Structure Of Mycalamide A Bound To The Large
           Ribosomal Subunit
 gi|290790091|pdb|3I56|Y Chain Y, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
           Large Ribosomal Subunit
 gi|48865|emb|CAA41288.1| ribosomal protein [Haloarcula marismortui]
 gi|55231094|gb|AAV46513.1| 50S ribosomal protein L32E [Haloarcula marismortui ATCC 43049]
 gi|228188|prf||1718307E ribosomal protein HL5
          Length = 241

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + L +I+G+GP +   L ++ F +V+ +  +    LA + GI   +A +I  
Sbjct: 15  TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKA 66


>gi|224003765|ref|XP_002291554.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973330|gb|EED91661.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 191

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            LL  FGT K +  +S E L+   G+  K   ++Y  FH+
Sbjct: 149 QLLSQFGTWKNLVGASVEELSVCPGVGVKKVRRLYEAFHR 188


>gi|42561289|ref|NP_975740.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|81400468|sp|Q6MSK8|DNLJ_MYCMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|42492787|emb|CAE77382.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301320499|gb|ADK69142.1| DNA ligase (NAD(+)) [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 668

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L + +  +  +  +S + L  I  I + +A  I + F    +
Sbjct: 513 GIRHIGSKTAKILARKYQNIDNLMSASYDELIQINSIGESLALSIIDWFKIEDN 566


>gi|116668758|ref|YP_829691.1| DNA integrity scanning protein DisA [Arthrobacter sp. FB24]
 gi|116608867|gb|ABK01591.1| protein of unknown function DUF147 [Arthrobacter sp. FB24]
          Length = 358

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R     S L  +          L+  FG ++ +  ++ + L +++GI  + A  +    
Sbjct: 290 RGYRLLSGLKAVP---KAVADRLVDHFGGLQYLMAATIDDLMTVDGIGDQRARTVREGL 345


>gi|332361975|gb|EGJ39777.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK49]
          Length = 652

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   +K   +     L  I  +G    R+LL+ F  +  +S++S E +A+I+ +   IA
Sbjct: 485 AIQASKKNSAERLLFGL-GIRHVGSKASRILLEKFHDILRLSQASQEEIAAIDSLGTVIA 543

Query: 601 CKIYNHFHKNTSH 613
             ++ +F +  S 
Sbjct: 544 QSLHTYFEQEGSQ 556


>gi|325110927|ref|YP_004271995.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
 gi|324971195|gb|ADY61973.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
          Length = 675

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    R+L + FG++  +   S E LA++  I   IA  +Y   H +
Sbjct: 516 NIRHVGTSNARILAERFGSLGQLQEQSAENLAAVNEIGPVIAESVYEFLHSD 567


>gi|116494557|ref|YP_806291.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
 gi|122264017|sp|Q03AC3|DNLJ_LACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116104707|gb|ABJ69849.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
          Length = 674

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R+   +     L  I  +G    R+L + FG +  +  +S E +A +  I   I 
Sbjct: 502 AINNSRQNSVERLIFGL-GIRHVGGKAARILAEHFGDLDHLMTASQEAIADVPNIGPTIG 560

Query: 601 CKIYNHFH 608
             I  +F 
Sbjct: 561 EAIVTYFK 568


>gi|265753576|ref|ZP_06088931.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
 gi|263235290|gb|EEZ20814.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
          Length = 665

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF ++  ++ +S + L  ++ I +KIA  I  +F
Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDDLIHVDEIGEKIAQSILLYF 559


>gi|29346304|ref|NP_809807.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568276|ref|ZP_04845687.1| DNA ligase [Bacteroides sp. 1_1_6]
 gi|81445157|sp|Q8A9C1|DNLJ_BACTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29338199|gb|AAO76001.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842349|gb|EES70429.1| DNA ligase [Bacteroides sp. 1_1_6]
          Length = 666

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SFG +  + ++  E L SI+ I +KIA  I  +F   ++
Sbjct: 516 VGETVAKKIAKSFGDIDELRQADLEKLISIDEIGEKIARSILLYFSNESN 565


>gi|56807990|ref|ZP_00365800.1| COG1555: DNA uptake protein and related DNA-binding proteins
           [Streptococcus pyogenes M49 591]
          Length = 163

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA+   L  I GIG  R + ++      G  K +     E L  + GI +K   K+ +
Sbjct: 106 KASLEELQHIPGIGAKRAQDIIDMRDKLGGFKAL-----EDLRQVSGIGEKTLEKLKD 158


>gi|308187689|ref|YP_003931820.1| DNA ligase [Pantoea vagans C9-1]
 gi|308058199|gb|ADO10371.1| DNA ligase [Pantoea vagans C9-1]
          Length = 672

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FG ++ +  +  E L ++  + K +A  + N   + ++
Sbjct: 520 VGEATAANLANHFGELQKVMDADLEALIAVPDVGKVVAAHVRNFMEEESN 569


>gi|73541575|ref|YP_296095.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
 gi|123732913|sp|Q470D2|DNLJ_RALEJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|72118988|gb|AAZ61251.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
          Length = 711

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 541 AITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           AI   R     +  +S    I  +G    + L + FG +  +  +    L  +  +   +
Sbjct: 531 AIEASRSTTFNRFIFS--LGIRHVGEATAKDLARHFGKLDGLMVADEAALLEVNDVGPVV 588

Query: 600 ACKIYNHF 607
           A  I N F
Sbjct: 589 AQSIVNFF 596


>gi|329117808|ref|ZP_08246525.1| comEA protein [Streptococcus parauberis NCFD 2020]
 gi|326908213|gb|EGE55127.1| comEA protein [Streptococcus parauberis NCFD 2020]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ---SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L +I GIG  R   +++     G  K     S E L  I GI KK   K+ ++ 
Sbjct: 169 ATSDQLTKIPGIGEKRAHEIIEARDKMGGFK-----SLEDLTKISGIGKKTLEKMKDNL 222


>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
 gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
          Length = 928

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG-----------ISKKIACKIYN 605
            I G+G    + L+Q FG+V+ I  ++ + L                ISKK+A  I +
Sbjct: 193 GIPGVGEKTAKKLIQDFGSVEGII-ANSDQLKGKLKENIETYAEQGLISKKLATIILD 249


>gi|212693183|ref|ZP_03301311.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
 gi|212664288|gb|EEB24860.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
          Length = 665

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF ++  ++ +S + L  ++ I +KIA  I  +F
Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDDLIHVDEIGEKIAQSILLYF 559


>gi|171779630|ref|ZP_02920586.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281732|gb|EDT47166.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 652

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R LL+ F +++ +  +  E +A+I+G+   IA  + ++F K  + 
Sbjct: 502 GIRHVGAKASRQLLEVFESIENLVAADEEAIANIDGLGTVIAKSLRSYFAKKEAE 556



 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I G+GP   + L    L     V  I R S E L +++G  +K A K+YN    + +++
Sbjct: 436 NITGLGPSIVKKLFTADLVH--DVADIYRLSVEDLLTLDGFKEKSAEKLYNAIQASKANS 493


>gi|187777242|ref|ZP_02993715.1| hypothetical protein CLOSPO_00789 [Clostridium sporogenes ATCC
           15579]
 gi|187774170|gb|EDU37972.1| hypothetical protein CLOSPO_00789 [Clostridium sporogenes ATCC
           15579]
          Length = 744

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611
           I+GIGP+  + +++ FG  T+  I  ++ E L  IEGI KK    IY+ +  +N 
Sbjct: 88  ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTEIEGIGKKKIEIIYDSYIKQNE 141


>gi|270292770|ref|ZP_06198981.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
 gi|270278749|gb|EFA24595.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
          Length = 652

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LLLQ F +++ ++++ PE +ASIE +   IA  +   F
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGSVIAKSLQTFF 550


>gi|237709923|ref|ZP_04540404.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
 gi|229456016|gb|EEO61737.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
          Length = 665

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF ++  ++ +S + L  ++ I +KIA  I  +F
Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDDLIHVDEIGEKIAQSILLYF 559


>gi|322376748|ref|ZP_08051241.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
 gi|321282555|gb|EFX59562.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
          Length = 652

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ ++++ PE +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|307708748|ref|ZP_07645210.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
 gi|307615114|gb|EFN94325.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
          Length = 652

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ ++++ PE +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|303254175|ref|ZP_07340287.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455]
 gi|302598846|gb|EFL65880.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455]
          Length = 652

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ ++++ PE +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|289168011|ref|YP_003446280.1| DNA ligase [Streptococcus mitis B6]
 gi|288907578|emb|CBJ22415.1| DNA ligase [Streptococcus mitis B6]
          Length = 652

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ ++++ PE +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|326328756|ref|ZP_08195092.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1]
 gi|325953378|gb|EGD45382.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1]
          Length = 360

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            L+  FGT++ +  +S + L ++EG+ +  A  +     +    T
Sbjct: 310 RLVDHFGTLQKLLSASVDDLQAVEGVGELRARSVREGLSRLAEST 354


>gi|296088298|emb|CBI36743.3| unnamed protein product [Vitis vinifera]
          Length = 398

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I  +S E LA   GI ++   ++Y+ FH+
Sbjct: 264 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 298


>gi|271501855|ref|YP_003334881.1| DNA ligase [Dickeya dadantii Ech586]
 gi|270345410|gb|ACZ78175.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech586]
          Length = 683

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 14/76 (18%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  +   S LD+              I  +G      L   FGT+  +  +  E L  + 
Sbjct: 502 KSAQNLVSALDKAKSTTFARFLYALGIRDVGEATAANLASHFGTLDALQAADLEALQQVP 561

Query: 594 GISKKIACKIYNHFHK 609
            +   +A  + +   +
Sbjct: 562 DVGIVVATHVRHFLDE 577


>gi|256847801|ref|ZP_05553246.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
 gi|256715490|gb|EEU30466.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
          Length = 674

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    RL+ + FG++  + ++S E +A+++ I   I   +  +F
Sbjct: 518 GIRHVGAKVARLIAEKFGSLDAVMKASAEDIAAVDTIGPTIGDSVATYF 566


>gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046]
 gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046]
          Length = 679

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+G    R+L  +F T+  +  +  + L     +    A  I + F 
Sbjct: 522 GIRGVGETTARMLANTFQTLDALRVADIDALKKTPDVGDITAEWIVDFFQ 571


>gi|229545130|ref|ZP_04433855.1| competence protein comEA [Enterococcus faecalis TX1322]
 gi|229309675|gb|EEN75662.1| competence protein comEA [Enterococcus faecalis TX1322]
 gi|315144857|gb|EFT88873.1| comEA protein [Enterococcus faecalis TX2141]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 14/63 (22%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           +A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ 
Sbjct: 167 RATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLK 218

Query: 605 NHF 607
           +  
Sbjct: 219 DML 221


>gi|224373470|ref|YP_002607842.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola
           AmH]
 gi|223589333|gb|ACM93069.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola
           AmH]
          Length = 546

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISR-SSPETLASIEGISKKIACKIYN 605
            L  I G+GP R + L ++FG   +  + + +    L  + G   K+  KI  
Sbjct: 94  ELLSIEGLGPKRVKQLYETFGIKNMDDLKKYAYSGELDKLPGFGPKLIEKILK 146


>gi|194335563|ref|YP_002017357.1| DNA protecting protein DprA [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308040|gb|ACF42740.1| DNA protecting protein DprA [Pelodictyon phaeoclathratiforme BU-1]
          Length = 383

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L  I GIGP R + +       +  +       L  + GI + +A ++++  H
Sbjct: 15  ALTLIPGIGPARIKAITTFLHNRLADVLHCDVGELIQVSGIGESLARQMHHFLH 68


>gi|324523831|gb|ADY48308.1| DNA excision repair protein ERCC-1 [Ascaris suum]
          Length = 226

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + L+ +FG++  I+ +  E L+   G+    A  I+  F 
Sbjct: 181 QRLIGTFGSIAAIANADVERLSLCPGLGPVKAENIFMFFR 220


>gi|319652078|ref|ZP_08006198.1| hypothetical protein HMPREF1013_02810 [Bacillus sp. 2_A_57_CT2]
 gi|317396226|gb|EFV76944.1| hypothetical protein HMPREF1013_02810 [Bacillus sp. 2_A_57_CT2]
          Length = 126

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 14  QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLE 73
              D    +L+VGKA  L++R+K +   N    +       I  I        +E  + E
Sbjct: 50  LFFDANEDLLFVGKARKLRQRVKKHFEDNVSPIKNHR--DDIYKIAVIYVEDSMEREIYE 107

Query: 74  ANMIKRLKPRFNI 86
             +I  L  +FNI
Sbjct: 108 TYIINTLHAKFNI 120


>gi|88604173|ref|YP_504351.1| DNA repair and recombination protein RadA [Methanospirillum
           hungatei JF-1]
 gi|88189635|gb|ABD42632.1| DNA repair and recombination protein RadA [Methanospirillum
           hungatei JF-1]
          Length = 407

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602
            L++I G+GP     L ++ + +V+ I++++   L     I +  A K
Sbjct: 7   KLEDIPGVGPTTAEKLREAGYESVEKIAQATATELYDTAEIGEATARK 54


>gi|238765534|ref|ZP_04626449.1| DNA ligase [Yersinia kristensenii ATCC 33638]
 gi|238696249|gb|EEP89051.1| DNA ligase [Yersinia kristensenii ATCC 33638]
          Length = 670

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 18/48 (37%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F  +  +  +  E L S+  + + +A  + N   + 
Sbjct: 520 VGEATAANLAAHFRNLTNLRAADIEALKSVPDVGEIVAKHVLNFLGEE 567


>gi|228921793|ref|ZP_04085109.1| hypothetical protein bthur0011_27890 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837875|gb|EEM83200.1| hypothetical protein bthur0011_27890 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 213

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 20/105 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
           +  G+Y + D    ++Y+GKA++++ R+ ++ +S ++   I   +   N + + +  +  
Sbjct: 19  DDSGIYFIRDYNDNIIYIGKAFSIKSRVLAHFNSYSN---IKEYVHLFNKVAYLIEDS-- 73

Query: 68  EALLLEANMIK-----RLKPRFNILLRDDKSFP-----YILITDK 102
              LL+ ++++     + KP  N  +   K FP     YI  T+K
Sbjct: 74  ---LLKRSLLQVTYMIKYKPVLNKEV--QKEFPELYTQYIKQTNK 113


>gi|297829042|ref|XP_002882403.1| hypothetical protein ARALYDRAFT_477808 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328243|gb|EFH58662.1| hypothetical protein ARALYDRAFT_477808 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 407

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I  +S E LA   GI ++   ++Y+ FH+
Sbjct: 281 FGSLAHIIDASMEDLARCPGIGERKVRRLYDTFHE 315


>gi|168483024|ref|ZP_02707976.1| competence protein CelA [Streptococcus pneumoniae CDC1873-00]
 gi|172043553|gb|EDT51599.1| competence protein CelA [Streptococcus pneumoniae CDC1873-00]
 gi|332201420|gb|EGJ15490.1| comEA family protein [Streptococcus pneumoniae GA47368]
          Length = 216

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA+   L ++ G+G  R + ++           +     S + L  + GI  K   K+ +
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDY-------REANGKFKSVDELKKVSGIGAKTIEKLKD 211

Query: 606 H 606
           +
Sbjct: 212 Y 212


>gi|302823991|ref|XP_002993643.1| hypothetical protein SELMODRAFT_137345 [Selaginella moellendorffii]
 gi|300138571|gb|EFJ05335.1| hypothetical protein SELMODRAFT_137345 [Selaginella moellendorffii]
          Length = 209

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              S L  +  I       L  +FG++  +  +S E LA   GI ++   ++++ FH+
Sbjct: 128 RLTSALTSVRHINKTDVVTLGSTFGSMASVMSASMEDLARCPGIGERKVKRLHDAFHE 185


>gi|331084378|ref|ZP_08333482.1| hypothetical protein HMPREF0992_02406 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401642|gb|EGG81223.1| hypothetical protein HMPREF0992_02406 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 200

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A  + L EI G+G  + + +++     G  + I     E L  + GI  K   K+ ++ 
Sbjct: 144 ADLTELQEIPGVGEKKAQSIMEYREACGGFQNI-----EQLQEVPGIKGKTFDKVKDYI 197


>gi|327399096|ref|YP_004339965.1| DNA ligase [Hippea maritima DSM 10411]
 gi|327181725|gb|AEA33906.1| DNA ligase [Hippea maritima DSM 10411]
          Length = 667

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 29/51 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    +LL + F  ++ + +++ + L +I+GI ++IA  + + F +
Sbjct: 518 GIRHVGEFVAKLLAERFKNLENLKKATKDELLAIDGIGEEIADSVVSFFSE 568


>gi|322375289|ref|ZP_08049802.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
 gi|321279552|gb|EFX56592.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
          Length = 652

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LLLQ F +++ ++++ PE +ASIE +   IA  +  +F
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAQSLQTYF 550


>gi|260590121|ref|ZP_05856034.1| competence protein CelA [Blautia hansenii DSM 20583]
 gi|260539633|gb|EEX20202.1| competence protein CelA [Blautia hansenii DSM 20583]
          Length = 201

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A  + L EI G+G  + + +++     G  + I     E L  + GI  K   K+ ++ 
Sbjct: 145 ADLTELQEIPGVGEKKAQSIMEYREACGGFQNI-----EQLQEVPGIKGKTFDKVKDYI 198


>gi|206890248|ref|YP_002249789.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254781443|sp|B5YIF8|DNLJ_THEYD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206742186|gb|ACI21243.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 670

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + KK   S L     I+ +G    +LL Q F  ++ +     E L  I  I +K A  I
Sbjct: 503 AKSKKTTLSRLLYALGISQVGEYASKLLAQHFRKLEDLYHIKAEKLVQIPQIGEKTAKTI 562

Query: 604 YNHFHKNTS 612
              F+   +
Sbjct: 563 EQFFNNEEN 571


>gi|147676621|ref|YP_001210836.1| DNA integrity scanning protein DisA [Pelotomaculum
           thermopropionicum SI]
 gi|146272718|dbj|BAF58467.1| predicted nucleic acid-binding protein [Pelotomaculum
           thermopropionicum SI]
          Length = 358

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 10/59 (16%)

Query: 556 PLDEINGIGPLR-----KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L++I      R        L+++FGT+  I  ++ E L  +EGI +  A  I    ++
Sbjct: 294 ILEKIP-----RLPLPVIDNLVKTFGTLNRILVATIEELDDVEGIGEVRARSIKEGLNR 347


>gi|15229933|ref|NP_187172.1| ERCC1; 5'-flap endonuclease [Arabidopsis thaliana]
 gi|55976606|sp|Q9MA98|ERCC1_ARATH RecName: Full=DNA excision repair protein ERCC-1; Short=AtERCC1;
           Short=AtRAD10; AltName: Full=Ultraviolet hypersensitive
           7
 gi|6729031|gb|AAF27027.1|AC009177_17 putative nucleotide repair protein [Arabidopsis thaliana]
 gi|9800490|gb|AAF99316.1|AF276082_1 ERCC1 [Arabidopsis thaliana]
 gi|15215614|gb|AAK91352.1| AT3g05210/T12H1_18 [Arabidopsis thaliana]
 gi|21435979|gb|AAM51569.1| AT3g05210/T12H1_18 [Arabidopsis thaliana]
 gi|21618171|gb|AAM67221.1| putative nucleotide repair protein [Arabidopsis thaliana]
 gi|332640684|gb|AEE74205.1| DNA excision repair protein ERCC-1 [Arabidopsis thaliana]
          Length = 410

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I  +S E LA   GI ++   ++Y+ FH+
Sbjct: 282 FGSLAHIIDASMEDLARCPGIGERKVKRLYDTFHE 316


>gi|255595065|ref|XP_002536222.1| DNA ligase, NAD-dependent, putative [Ricinus communis]
 gi|223520412|gb|EEF26161.1| DNA ligase, NAD-dependent, putative [Ricinus communis]
          Length = 491

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +   + F +      ++ + L ++E +    A  +   F +N  + 
Sbjct: 341 GIPNVGENSAKNFARHFLSFAAFKAATADELQALEDVGPTTAASVRAFF-ENADNA 395


>gi|271965050|ref|YP_003339246.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
 gi|270508225|gb|ACZ86503.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
          Length = 696

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            + G G    R + + FG++  I  +  E + ++EGI  K A
Sbjct: 523 GVRGTGRSMSRRIARHFGSMDAIRAADAEAIEAVEGIGPKKA 564


>gi|16329180|ref|NP_439908.1| NAD-dependent DNA ligase LigA [Synechocystis sp. PCC 6803]
 gi|7674015|sp|P72588|DNLJ_SYNY3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|1651660|dbj|BAA16588.1| DNA ligase [Synechocystis sp. PCC 6803]
          Length = 669

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G +  +LL Q F TV+ +S++S   L  + GI  +IA  + N F  
Sbjct: 514 GIRHVGQVNAKLLSQQFPTVEKLSQASIPDLEGVYGIGPEIAEAVVNWFRN 564


>gi|222094064|ref|YP_002528121.1| nad-dependent DNA ligase liga [Bacillus cereus Q1]
 gi|221238119|gb|ACM10829.1| DNA ligase, NAD-dependent [Bacillus cereus Q1]
          Length = 615

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 458 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 510


>gi|304436463|ref|ZP_07396437.1| RecD/TraA family helicase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370509|gb|EFM24160.1| RecD/TraA family helicase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 723

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI-YNHFHKNT 611
           I GIGP   R +++ FG  T+K+I   +P  L  + GI  K A KI  ++  ++ 
Sbjct: 102 IEGIGPAMARRIVERFGTDTLKVIES-TPRRLTEVTGIGPKTAEKITASYLRQSE 155


>gi|311743339|ref|ZP_07717146.1| DNA integrity scanning protein [Aeromicrobium marinum DSM 15272]
 gi|311313407|gb|EFQ83317.1| DNA integrity scanning protein [Aeromicrobium marinum DSM 15272]
          Length = 364

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG+++ +  +S + L ++EG+    A  +    
Sbjct: 314 RLIDHFGSLQKLLAASLDDLQAVEGVGDLRARGVREGL 351


>gi|170587814|ref|XP_001898669.1| Helix-hairpin-helix motif family protein [Brugia malayi]
 gi|158593939|gb|EDP32533.1| Helix-hairpin-helix motif family protein [Brugia malayi]
          Length = 108

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           + L+ +FG+++ I+ +  + L    G+    A  I+  F  +
Sbjct: 63  QRLIATFGSIRKIANADIDRLLLCPGLGPTKAGNIHAFFRSS 104


>gi|77165170|ref|YP_343695.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
 gi|254433594|ref|ZP_05047102.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
 gi|123730661|sp|Q3JAI1|DNLJ_NITOC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76883484|gb|ABA58165.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
 gi|207089927|gb|EDZ67198.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
          Length = 675

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    ++L + FG+++ ++  S E L  +  I   +A  I   F +
Sbjct: 522 VGEATAQVLAKEFGSLEALASVSEERLQQVTDIGPIVAAHIAAFFRQ 568


>gi|47569950|ref|ZP_00240615.1| DNA ligase, NAD-dependent [Bacillus cereus G9241]
 gi|47553396|gb|EAL11782.1| DNA ligase, NAD-dependent [Bacillus cereus G9241]
          Length = 615

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 458 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 510


>gi|114563631|ref|YP_751144.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
 gi|122299383|sp|Q080K9|DNLJ_SHEFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114334924|gb|ABI72306.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
          Length = 670

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L Q F   + I  +S E L  +  +   +A  I   F
Sbjct: 519 VGEATAANLAQHFTEFERIRTASVEQLLEVADVGDIVAKHIRQFF 563


>gi|41615176|ref|NP_963674.1| Hef nuclease [Nanoarchaeum equitans Kin4-M]
 gi|40068900|gb|AAR39235.1| NEQ387 [Nanoarchaeum equitans Kin4-M]
          Length = 667

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            L    GIG      LL+ + T+K +  +S   L+ I G  +K A K+     K 
Sbjct: 613 VLASFPGIGEKSAEELLKRYKTIKNVVNASLSGLSIILG--EKRAKKLKEFLEKE 665


>gi|56962859|ref|YP_174586.1| NAD-dependent DNA ligase LigA [Bacillus clausii KSM-K16]
 gi|81366743|sp|Q5WJ30|DNLJ_BACSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56909098|dbj|BAD63625.1| DNA ligase [Bacillus clausii KSM-K16]
          Length = 671

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L   F T++ +  ++ E L ++  I +K+A  I ++F K
Sbjct: 515 VGAKAAKTLAYEFETMERLQEATFEQLLAVNEIGEKMADSIVSYFQK 561


>gi|332184463|gb|AEE26717.1| DNA ligase [Francisella cf. novicida 3523]
          Length = 678

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +    L   FG+++    +  E L  I  I + +A  I + +  +
Sbjct: 526 GIKDIGEVSSEALANHFGSLESFREAKFEQLIEINDIGEIMANNIVSFWQDS 577


>gi|296046585|gb|ADG86434.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 670

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L Q F   + I  +S E L  +  +   +A  I   F
Sbjct: 519 VGEATAANLAQHFAEFERIRTASVEQLLEVADVGDIVAKHIRQFF 563


>gi|82617212|emb|CAI64118.1| DNA repair and recombination protein [uncultured archaeon]
 gi|268322944|emb|CBH36532.1| DNA repair and recombination protein radA [uncultured archaeon]
          Length = 315

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           LDE+ G+GP     L ++ F +++ I+ +SP  L +   I +  A KI     +   
Sbjct: 3   LDELPGVGPAIAEKLREAGFNSLEAIAVASPMELVATTEIGEATASKIITAAREAAD 59


>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
 gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
          Length = 931

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 15/67 (22%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA-----SIE-----GI-SKKIACKIYNH- 606
            I GIG    + L++ FG+V+ I  ++ + L      ++E     GI SK++A  + +  
Sbjct: 194 GIPGIGEKTAKALVKQFGSVEQII-ANSDQLKGKQRENVENFADQGILSKRLATILLDAP 252

Query: 607 --FHKNT 611
             FH+  
Sbjct: 253 VEFHEED 259


>gi|296134038|ref|YP_003641285.1| DNA repair protein RadC [Thermincola sp. JR]
 gi|296032616|gb|ADG83384.1| DNA repair protein RadC [Thermincola potens JR]
          Length = 231

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LL +FG +K +  +S E ++SI+GI    A ++    
Sbjct: 56  QLLSAFGGLKELVGASVEEISSIKGIGLAKATQVKAAL 93


>gi|311030722|ref|ZP_07708812.1| YqxK [Bacillus sp. m3-13]
          Length = 388

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKIYNH 606
           PLD I G+GP     L   FGT   I   +S E L  + G  +KIA  I   
Sbjct: 318 PLDFIPGVGPKTLMKLRGVFGTEMGILHEASQEELVEVVG--EKIASLIVAA 367


>gi|220915846|ref|YP_002491150.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254781252|sp|B8JD56|DNLJ_ANAD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219953700|gb|ACL64084.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 687

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           RK      L    I  +G      L + FG +  +  +  E L  +  +  + A +I   
Sbjct: 524 RKTTLRRFLFALGIPQVGEATAATLARHFGDLARVMDADEEALKGVRDVGPETAAEIRAW 583


>gi|297623876|ref|YP_003705310.1| DNA protecting protein DprA [Truepera radiovictrix DSM 17093]
 gi|297165056|gb|ADI14767.1| DNA protecting protein DprA [Truepera radiovictrix DSM 17093]
          Length = 372

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 555 SPLDEI---NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           SPL  +    G+GP + + LL+ FG    ++ +S   L  +EG+  K+A  I   
Sbjct: 6   SPLLALAFTPGLGPRKLKALLEHFGDAASLADASAGALREVEGVGPKLAQTIVAF 60


>gi|289577826|ref|YP_003476453.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
 gi|289527539|gb|ADD01891.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
          Length = 662

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           IG    +++ + F T+  I ++  E    +  +  K+A  I + F +  +
Sbjct: 511 IGSKAAQVIAEHFKTMDDIMKAKFEDFTKLPDVGPKMARSIVSFFAEKQN 560


>gi|288554698|ref|YP_003426633.1| DNA integrity scanning protein DisA [Bacillus pseudofirmus OF4]
 gi|288545858|gb|ADC49741.1| DNA integrity scanning protein DisA [Bacillus pseudofirmus OF4]
          Length = 357

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  + P     L+  +G +  I  +S E L  +EGI +  A  I +   +
Sbjct: 293 ILHRIPRLPPAIINNLIDKYGNLSSIMFASIEELDEVEGIGEARAKMIKDGLQR 346


>gi|229137131|ref|ZP_04265750.1| DNA ligase [Bacillus cereus BDRD-ST26]
 gi|228646303|gb|EEL02518.1| DNA ligase [Bacillus cereus BDRD-ST26]
          Length = 589

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 432 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 484


>gi|295836378|ref|ZP_06823311.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
 gi|295825992|gb|EDY45591.2| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
          Length = 818

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 17/81 (20%)

Query: 550 KKAAYSPLDEIN------------G-----IGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           KK A S L+ I             G     +GP+    L + F ++  I  +    LA  
Sbjct: 574 KKNALSMLENIEAAKQRPLAQILTGLSIRHVGPVAAAALAREFRSIDRIFAAEENELAET 633

Query: 593 EGISKKIACKIYNHFHKNTSH 613
           EG+   IA  +   +    + 
Sbjct: 634 EGVGPTIAASLKQWYDAEEND 654


>gi|309389839|gb|ADO77719.1| DNA ligase, NAD-dependent [Halanaerobium praevalens DSM 2228]
          Length = 670

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           GIG  R   L ++F ++  +  +  + L +I  I   IA  I N F +
Sbjct: 519 GIGAARI--LAENFNSIDELKSAKIDDLKNISEIGPVIADSIVNFFQE 564


>gi|322804437|emb|CBZ01987.1| recd-like DNA helicase YrrC [Clostridium botulinum H04402 065]
          Length = 744

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKIYN-HFHKNT 611
           I+GIGP+  + +++ FG     I  ++ E L  IEGI KK    IY+ +  +N 
Sbjct: 88  ISGIGPVTAKKIVKKFGEATLNILDNNIERLTEIEGIGKKKIEVIYDSYIKQNE 141


>gi|228983547|ref|ZP_04143752.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228776143|gb|EEM24504.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 669

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L  I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKEINEIGEKMAQSVVAYFDNED 564


>gi|229154059|ref|ZP_04282184.1| DNA ligase [Bacillus cereus ATCC 4342]
 gi|228629339|gb|EEK86041.1| DNA ligase [Bacillus cereus ATCC 4342]
          Length = 669

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L  I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKEINEIGEKMAQSVVAYFDNED 564


>gi|326803914|ref|YP_004321732.1| putative ComE operon protein 1 [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650576|gb|AEA00759.1| putative ComE operon protein 1 [Aerococcus urinae ACS-120-V-Col10a]
          Length = 248

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  S L EI+GIG  +   ++Q     G+ +     + E +  + GI  K   KI  
Sbjct: 192 ADASQLQEISGIGEKKAADIIQYRESEGSFQ-----TIEEITEVSGIGDKTFEKIKE 243


>gi|238759468|ref|ZP_04620632.1| DNA ligase [Yersinia aldovae ATCC 35236]
 gi|238702365|gb|EEP94918.1| DNA ligase [Yersinia aldovae ATCC 35236]
          Length = 670

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 20/48 (41%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F  +  +  +  + L S++ + + +A  + N  ++ 
Sbjct: 520 VGEATAANLAAHFRNLANLRAADIDALKSVQDVGEVVAKHVMNFLNEE 567


>gi|255029497|ref|ZP_05301448.1| hypothetical protein LmonL_11153 [Listeria monocytogenes LO28]
          Length = 32

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 57 NIRFTVTCTEVEALLLEANMIK 78
          +  + VT + VEALLLE N+IK
Sbjct: 2  DFEYIVTSSNVEALLLEINLIK 23


>gi|219850727|ref|YP_002465159.1| DNA repair and recombination protein RadA [Methanosphaerula
           palustris E1-9c]
 gi|219544986|gb|ACL15436.1| DNA repair and recombination protein RadA [Methanosphaerula
           palustris E1-9c]
          Length = 327

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            ++++ G+GP     L  + F TV+ I+ +SP  LA    I +  A KI   
Sbjct: 7   EIEDLPGVGPTTAEKLRDAGFLTVESIATASPTELAEAAEIGEASAKKIIKA 58


>gi|195381327|ref|XP_002049404.1| GJ20764 [Drosophila virilis]
 gi|194144201|gb|EDW60597.1| GJ20764 [Drosophila virilis]
          Length = 256

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       +LQ FG ++ +  +S E LA + G+  + A K+Y   H+
Sbjct: 198 ALTNIKPVNKTDAVTILQIFGNLENLINASEERLAQVMGLGPRKAKKLYKTLHE 251


>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
 gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
          Length = 914

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 10/53 (18%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           D I G   IGP     LL+++G+++ I       + +I  I  K+A  +    
Sbjct: 185 DNIPGVKTIGPKTAIKLLKNYGSLEAI-------IENIPQIKGKVADNLREAL 230


>gi|260063119|ref|YP_003196199.1| DNA ligase [Robiginitalea biformata HTCC2501]
 gi|88784688|gb|EAR15858.1| DNA ligase [Robiginitalea biformata HTCC2501]
          Length = 673

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L +++  +  +  +S + L  ++ I ++IA  +   F
Sbjct: 522 VGETVAKKLARAYKNIDALMAASADELQQVDEIGQRIAGSVVEFF 566


>gi|315127017|ref|YP_004069020.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
 gi|315015531|gb|ADT68869.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
          Length = 673

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 14/77 (18%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  K   + LD+              I  +G    + L   F T++ +  +S E L  + 
Sbjct: 492 KSAKNLVAALDDAKTTTLAKFLYSLGIREVGEATAQNLANHFLTLENVIDASIEQLIEVS 551

Query: 594 GISKKIACKIYNHFHKN 610
            + + +A  +   F + 
Sbjct: 552 DVGEIVAKHVRGFFTEE 568


>gi|153939064|ref|YP_001389532.1| RecD/TraA family helicase [Clostridium botulinum F str. Langeland]
 gi|152934960|gb|ABS40458.1| helicase, RecD/TraA family [Clostridium botulinum F str. Langeland]
          Length = 744

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611
           I+GIGP+  + +++ FG  T+  I  ++ E L  IEGI KK    IY+ +  +N 
Sbjct: 88  ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTEIEGIGKKKIEIIYDSYIKQNE 141


>gi|332306125|ref|YP_004433976.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173454|gb|AEE22708.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 677

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            K+  + L        I  +G    + L   F T+  I ++  + L ++  +   +A  +
Sbjct: 506 GKSKKTTLAKFLYSLGIREVGEATAQNLALHFLTLDAIEQADLDALQAVSDVGIIVAQHV 565

Query: 604 YNHFHKN 610
            N F + 
Sbjct: 566 VNFFKEE 572


>gi|170755250|ref|YP_001779796.1| RecD/TraA family helicase [Clostridium botulinum B1 str. Okra]
 gi|169120462|gb|ACA44298.1| helicase, RecD/TraA family [Clostridium botulinum B1 str. Okra]
          Length = 744

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611
           I+GIGP+  + +++ FG  T+  I  ++ E L  IEGI KK    IY+ +  +N 
Sbjct: 88  ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTEIEGIGKKKIEIIYDSYIKQNE 141


>gi|323485704|ref|ZP_08091041.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum
           WAL-14163]
 gi|323400967|gb|EGA93328.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum
           WAL-14163]
          Length = 663

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACK 602
           KKA+ + L        I+GIG    ++L + F      + ++  E L +++GI   +A  
Sbjct: 489 KKASETTLPRVVYSLGISGIGLANAKMLCRRFKNDFAAMRKAKKEELVAVDGIGDVLADA 548

Query: 603 IYNHFHKNTSH 613
             + F    ++
Sbjct: 549 WIDFFSSEKNN 559


>gi|319655032|ref|ZP_08009103.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
 gi|317393299|gb|EFV74066.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
          Length = 668

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    + L Q FG ++ + ++S + L +I  I +K+A  I + F +  +H
Sbjct: 511 GIRHVGAKAAKTLAQEFGHMEALEKASRDNLTAINEIGEKMADSIVSFFDQEEAH 565


>gi|288918322|ref|ZP_06412675.1| protein of unknown function DUF147 [Frankia sp. EUN1f]
 gi|288350217|gb|EFC84441.1| protein of unknown function DUF147 [Frankia sp. EUN1f]
          Length = 359

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FGT++ +  +  + L ++EG+ +  A  +    
Sbjct: 309 RLVDHFGTLQKLLAAGVDDLQAVEGVGEARARAVREGL 346


>gi|253574669|ref|ZP_04852009.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845715|gb|EES73723.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 170

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 12/52 (23%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACK 602
            L EI GIG  + + +L           +     S E L  ++GI  K+  K
Sbjct: 119 ELQEIPGIGEKKAKAILDY-------RNAHGPFTSIEALTEVKGIGDKMLEK 163



 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 581 ISRSSPETLASIEGISKKIACKIYNH 606
           I+R+    L  I GI +K A  I ++
Sbjct: 112 INRAGLAELQEIPGIGEKKAKAILDY 137


>gi|168177501|ref|ZP_02612165.1| helicase, RecD/TraA family [Clostridium botulinum NCTC 2916]
 gi|182671377|gb|EDT83351.1| helicase, RecD/TraA family [Clostridium botulinum NCTC 2916]
          Length = 744

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611
           I+GIGP+  + +++ FG  T+  I  ++ E L  IEGI KK    IY+ +  +N 
Sbjct: 88  ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTEIEGIGKKKIEIIYDSYIKQNE 141


>gi|15805160|ref|NP_293846.1| smf protein [Deinococcus radiodurans R1]
 gi|6457785|gb|AAF09710.1|AE001874_7 smf protein [Deinococcus radiodurans R1]
          Length = 370

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI-SKKIA 600
            G+GP R   L + FG+ +    +    L  +EG+ S+ +A
Sbjct: 23  PGLGPRRIENLRRHFGSAEAALAAPLTELRRVEGLDSRSVA 63


>gi|282856148|ref|ZP_06265431.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
 gi|282585907|gb|EFB91192.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
          Length = 681

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 528 YFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
             +Q         AI   ++R  K   + L  I  +G      L + F ++  I+ +  E
Sbjct: 495 KLLQ---------AIAKSKERPLKFLITAL-GIREVGAGVAAELAKRFSSLDEIAAADEE 544

Query: 588 TLASIEGISKKIACKIYNHFHKN 610
            LA++EG+   IA  I   F + 
Sbjct: 545 RLAAVEGVGPVIAGSIKTFFGEE 567


>gi|228989291|ref|ZP_04149283.1| DNA integrity scanning protein disA [Bacillus pseudomycoides DSM
           12442]
 gi|228995474|ref|ZP_04155143.1| DNA integrity scanning protein disA [Bacillus mycoides Rock3-17]
 gi|229003097|ref|ZP_04160948.1| DNA integrity scanning protein disA [Bacillus mycoides Rock1-4]
 gi|228758157|gb|EEM07351.1| DNA integrity scanning protein disA [Bacillus mycoides Rock1-4]
 gi|228764278|gb|EEM13156.1| DNA integrity scanning protein disA [Bacillus mycoides Rock3-17]
 gi|228770444|gb|EEM19016.1| DNA integrity scanning protein disA [Bacillus pseudomycoides DSM
           12442]
          Length = 357

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R+S   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRASINELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|74193975|dbj|BAE36910.1| unnamed protein product [Mus musculus]
          Length = 401

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 554 YSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            S L+       I GI  +    +   F +VK ++ SSPE +++   ++ + A +IY + 
Sbjct: 308 TSKLEALPFYLSIPGISYITALNMCHQFSSVKKMANSSPEEISTCAQVNHQKAEEIYKYI 367

Query: 608 H 608
           H
Sbjct: 368 H 368


>gi|323695090|ref|ZP_08109232.1| DNA ligase [Clostridium symbiosum WAL-14673]
 gi|323500845|gb|EGB16765.1| DNA ligase [Clostridium symbiosum WAL-14673]
          Length = 663

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACK 602
           KKA+ + L        I+GIG    ++L + F      + ++  E L +++GI   +A  
Sbjct: 489 KKASETTLPRVVYSLGISGIGLANAKMLCRRFKNDFAAMRKAEKEELVAVDGIGDVLADA 548

Query: 603 IYNHFHKNTSH 613
             + F    ++
Sbjct: 549 WIDFFSSEKNN 559


>gi|167037529|ref|YP_001665107.1| hypothetical protein Teth39_1116 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115944|ref|YP_004186103.1| hypothetical protein Thebr_1144 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856363|gb|ABY94771.1| conserved hypothetical protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929035|gb|ADV79720.1| hypothetical protein Thebr_1144 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 390

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYN 605
           PL+ I  IG      L+  FG+ +  +  +  E L  +  I    A  I  
Sbjct: 320 PLEFIPNIGRKTIEKLVNYFGSELYALHHAPYEELEKV--IGPSNALNILR 368


>gi|301052018|ref|YP_003790229.1| DNA ligase [Bacillus anthracis CI]
 gi|300374187|gb|ADK03091.1| DNA ligase [Bacillus cereus biovar anthracis str. CI]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564


>gi|256750729|ref|ZP_05491614.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750312|gb|EEU63331.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus CCSD1]
          Length = 362

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R+K     L  + GIG      L++ F T + + ++    +    G SKK+A KI   
Sbjct: 3   REKIFKIWLSTVKGIGYKSFVQLMEFFKTAEEVYKAKEIDIFKAIG-SKKLAQKIIEA 59


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA-----SIEG------ISKKIACKIYN 605
            I GIG    + L++ +G+V+ I  ++   L      ++E       ISKK+A  I N
Sbjct: 194 GIPGIGEKTAKALIKQYGSVENII-ANSHELKGKQRENVETYAEQGLISKKLATIILN 250


>gi|196040110|ref|ZP_03107412.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
 gi|196028965|gb|EDX67570.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564


>gi|206974389|ref|ZP_03235306.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
 gi|217957864|ref|YP_002336408.1| NAD-dependent DNA ligase LigA [Bacillus cereus AH187]
 gi|254781553|sp|B7HSW5|DNLJ_BACC7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781554|sp|B9J1L6|DNLJ_BACCQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|206747629|gb|EDZ59019.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
 gi|217064176|gb|ACJ78426.1| DNA ligase, NAD-dependent [Bacillus cereus AH187]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564


>gi|332523413|ref|ZP_08399665.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
 gi|332314677|gb|EGJ27662.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
          Length = 652

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    RLLL++FG ++ + +S  E +A I+G+   IA  I  +F K  +  
Sbjct: 502 GIRHVGEKASRLLLETFGDIETVMQSDEEAIAQIDGLGHVIANSIAQYFAKPEAQQ 557


>gi|311068864|ref|YP_003973787.1| hypothetical protein BATR1942_09615 [Bacillus atrophaeus 1942]
 gi|310869381|gb|ADP32856.1| hypothetical protein BATR1942_09615 [Bacillus atrophaeus 1942]
          Length = 123

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMH--SNNHTHRITHMISQINNIRFTVTCTEVE 68
           GVY   +     LY+G + N+ KR+  +      N   R  ++  +   I       ++ 
Sbjct: 39  GVYTFYNKYLEPLYIGISVNVGKRVMEHFGTPKGNKDLR-QYIERETVYISVFYEDRKIY 97

Query: 69  ALLLEANMIKRLKPRFNILLRDDKS 93
             + E+ +IK + PRFN+    DK+
Sbjct: 98  QEIYESYLIKVMSPRFNV----DKT 118


>gi|229083402|ref|ZP_04215751.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-44]
 gi|228699911|gb|EEL52547.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-44]
          Length = 357

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R+S   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRASINELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|126649600|ref|ZP_01721841.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
 gi|126593925|gb|EAZ87848.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
          Length = 667

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 28/56 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +++ + FG+++ +  ++ E L +I  I  K+A  +  +F  + +  
Sbjct: 510 GIRHVGEKAAKIVSEQFGSMEAVMAATDEQLVAIYEIGDKMASSLVEYFSNDDAGA 565


>gi|49479078|ref|YP_034626.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476055|ref|YP_893206.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis str. Al
           Hakam]
 gi|225862344|ref|YP_002747722.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB102]
 gi|229182688|ref|ZP_04309929.1| DNA ligase [Bacillus cereus BGSC 6E1]
 gi|81397398|sp|Q6HP94|DNLJ_BACHK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166215395|sp|A0R906|DNLJ_BACAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781551|sp|C1EV74|DNLJ_BACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49330634|gb|AAT61280.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118415280|gb|ABK83699.1| NAD-dependent DNA ligase [Bacillus thuringiensis str. Al Hakam]
 gi|225789655|gb|ACO29872.1| DNA ligase (NAD(+)) [Bacillus cereus 03BB102]
 gi|228600773|gb|EEK58352.1| DNA ligase [Bacillus cereus BGSC 6E1]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564


>gi|300118925|ref|ZP_07056636.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
 gi|298723541|gb|EFI64272.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564


>gi|229089420|ref|ZP_04220691.1| DNA ligase [Bacillus cereus Rock3-42]
 gi|228693897|gb|EEL47589.1| DNA ligase [Bacillus cereus Rock3-42]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564


>gi|257053376|ref|YP_003131209.1| 50S ribosomal protein L32e [Halorhabdus utahensis DSM 12940]
 gi|256692139|gb|ACV12476.1| Ribosomal protein L32e [Halorhabdus utahensis DSM 12940]
          Length = 335

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + L +++GIG      L +S F T+  +  +  + L  + GI   +A +I  
Sbjct: 7   TELTDVSGIGEETAGALRESGFETIDDLREADEDALTEVTGIGNALAARIKA 58



 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           L +I+G+G      L ++ F TV+ ++R+    L  +EGI   +A +I
Sbjct: 110 LTDISGVGEGTAENLREAGFETVEDVARAEQSDLTEVEGIGNALAARI 157


>gi|163937936|ref|YP_001642822.1| excinuclease ABC subunit C [Bacillus weihenstephanensis KBAB4]
 gi|163865791|gb|ABY46847.1| Excinuclease ABC C subunit domain protein [Bacillus
           weihenstephanensis KBAB4]
          Length = 237

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQ--INNIRFTVTCTEVE 68
           GVY   D     LYVG   +L  R  +++   +  HR+  ++    ++ + +        
Sbjct: 133 GVYVFYDAFSNPLYVGITGSLYHRTNTHIIGISSNHRLKELMRNDLVHRVDYMYVSNVFH 192

Query: 69  ALLLEANMIKRLKPRFN 85
             + E  +IK L P  N
Sbjct: 193 RDIYETYLIKALNPFCN 209


>gi|30260478|ref|NP_842855.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Ames]
 gi|49183320|ref|YP_026572.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Sterne]
 gi|50196911|ref|YP_052606.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65317730|ref|ZP_00390689.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Bacillus anthracis str. A2012]
 gi|165871348|ref|ZP_02215996.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
 gi|167634237|ref|ZP_02392559.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
 gi|167640082|ref|ZP_02398349.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
 gi|170688355|ref|ZP_02879564.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
 gi|170708762|ref|ZP_02899199.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
 gi|177653653|ref|ZP_02935792.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
 gi|190567340|ref|ZP_03020254.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|190567489|ref|ZP_03020402.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|196034623|ref|ZP_03102031.1| DNA ligase, NAD-dependent [Bacillus cereus W]
 gi|227812970|ref|YP_002812979.1| DNA ligase, NAD-dependent [Bacillus anthracis str. CDC 684]
 gi|228913034|ref|ZP_04076673.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228925550|ref|ZP_04088639.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228944102|ref|ZP_04106481.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229119952|ref|ZP_04249207.1| DNA ligase [Bacillus cereus 95/8201]
 gi|229604913|ref|YP_002864923.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
 gi|254686689|ref|ZP_05150547.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. CNEVA-9066]
 gi|254739086|ref|ZP_05196788.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742292|ref|ZP_05199978.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Kruger B]
 gi|254756068|ref|ZP_05208097.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Vollum]
 gi|254761885|ref|ZP_05213734.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Australia
           94]
 gi|81584374|sp|Q81ZG1|DNLJ_BACAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781547|sp|C3PBP1|DNLJ_BACAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781548|sp|C3L543|DNLJ_BACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|30253846|gb|AAP24341.1| DNA ligase (NAD(+)) [Bacillus anthracis str. Ames]
 gi|49177247|gb|AAT52623.1| DNA ligase, NAD-dependent [Bacillus anthracis str. Sterne]
 gi|50082973|gb|AAT70114.1| DNA ligase, NAD-dependent [Bacillus anthracis str. 'Ames Ancestor']
 gi|164712832|gb|EDR18361.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
 gi|167511893|gb|EDR87272.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
 gi|167530551|gb|EDR93266.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
 gi|170126341|gb|EDS95231.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
 gi|170667687|gb|EDT18441.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
 gi|172081233|gb|EDT66308.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
 gi|190561276|gb|EDV15248.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|190561467|gb|EDV15438.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
 gi|195992666|gb|EDX56626.1| DNA ligase, NAD-dependent [Bacillus cereus W]
 gi|227002604|gb|ACP12347.1| DNA ligase (NAD(+)) [Bacillus anthracis str. CDC 684]
 gi|228663418|gb|EEL19003.1| DNA ligase [Bacillus cereus 95/8201]
 gi|228815491|gb|EEM61733.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228834028|gb|EEM79576.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228846439|gb|EEM91452.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229269321|gb|ACQ50958.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564


>gi|331005395|ref|ZP_08328777.1| DNA ligase [gamma proteobacterium IMCC1989]
 gi|330420789|gb|EGG95073.1| DNA ligase [gamma proteobacterium IMCC1989]
          Length = 707

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    R L Q FG +  +  ++ E L  +  +   +A  I    
Sbjct: 554 VGEATARNLAQYFGDISRLLTATEEDLQRVNDVGPVVAQFIVAFL 598


>gi|254724765|ref|ZP_05186548.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. A1055]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564


>gi|228931797|ref|ZP_04094693.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228827777|gb|EEM73515.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564


>gi|218901495|ref|YP_002449329.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
 gi|254781549|sp|B7JM96|DNLJ_BACC0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218535434|gb|ACK87832.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVAYFDNED 564


>gi|330985030|gb|EGH83133.1| Excinuclease ABC C subunit domain protein [Pseudomonas syringae
          pv. lachrymans str. M301315]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 1  MSSEQMPECPGVYQMLDIAGRVLYVGKAYN-LQKRIKSYMHSNNHT 45
          ++ +Q+P   GVY + D+    +YVG++ + ++ R+  ++ S    
Sbjct: 9  LAVKQLPTAIGVYVLCDLDNIPIYVGQSKDGIRSRVARHLTSARSD 54


>gi|261253653|ref|ZP_05946226.1| DNA ligase [Vibrio orientalis CIP 102891]
 gi|260937044|gb|EEX93033.1| DNA ligase [Vibrio orientalis CIP 102891]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F T+  +  ++ E L  ++ I + +A  I   F ++ + T
Sbjct: 521 VGEATAANLAQHFKTLDAVKIANHEALVEVQDIGEIVASHIIAFFAQDKNLT 572


>gi|284034291|ref|YP_003384222.1| hypothetical protein Kfla_6426 [Kribbella flavida DSM 17836]
 gi|283813584|gb|ADB35423.1| protein of unknown function DUF147 [Kribbella flavida DSM 17836]
          Length = 364

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG ++ +  +S + L +++G+ +  A  +    
Sbjct: 314 RLIEHFGHLQKLLAASIDDLQTVDGVGENRARTVREGL 351


>gi|323341293|ref|ZP_08081538.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
 gi|323091287|gb|EFZ33914.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
          Length = 671

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           RK +    L    I  +G    +LL + F T+  ++++S E + +IE + + IA  +  +
Sbjct: 499 RKNSLERLLFGLGIRHVGAKAAKLLAERFMTMDALAKASKEEIVAIETMGETIADSLSTY 558

Query: 607 FHKNTSH 613
           F+   ++
Sbjct: 559 FNSEGAN 565


>gi|226226196|ref|YP_002760302.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
 gi|254781336|sp|C1A6H2|DNLJ_GEMAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226089387|dbj|BAH37832.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
          Length = 689

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K+   S L     I  +G    +LL + +G++  +  ++ E L ++ GI   IA  + ++
Sbjct: 514 KQQPLSRLMFGLGIRHVGAQAAQLLSRQYGSLDALMNATAEQLGAVRGIGSIIAQSVASY 573

Query: 607 F 607
           F
Sbjct: 574 F 574


>gi|50511007|dbj|BAD32489.1| mKIAA1596 protein [Mus musculus]
          Length = 1382

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 554  YSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             S L+       I GI  +    +   F +VK ++ SSPE +++   ++ + A +IY + 
Sbjct: 1289 TSKLEALPFYLSIPGISYITALNMCHQFSSVKKMANSSPEEISTCAQVNHQKAEEIYKYI 1348

Query: 608  H 608
            H
Sbjct: 1349 H 1349


>gi|56751245|ref|YP_171946.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 6301]
 gi|81299088|ref|YP_399296.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 7942]
 gi|81596046|sp|Q5N2P4|DNLJ_SYNP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123728245|sp|Q31RL0|DNLJ_SYNE7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|56686204|dbj|BAD79426.1| DNA ligase [Synechococcus elongatus PCC 6301]
 gi|81167969|gb|ABB56309.1| DNA ligase, NAD-dependent [Synechococcus elongatus PCC 7942]
          Length = 679

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G +  + L  +F + + +++++P+ LA++ GI  +IA  ++  F
Sbjct: 524 GIRHVGSVNAKNLAATFTSAEALAQATPDELAAVYGIGSEIADAVHQWF 572


>gi|331270899|ref|YP_004385610.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925]
 gi|329127291|gb|AEB77235.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925]
          Length = 649

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +  +G    +LL++ F ++  I   +   +  IEGI   +  +IYN+F
Sbjct: 496 GVPNVGLGTAKLLVKQFKSIDKIMNCNLTEIYGIEGIGDVVGSEIYNYF 544


>gi|315923964|ref|ZP_07920192.1| crossover junction ATP-dependent DNA helicase RuvA
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622804|gb|EFV02757.1| crossover junction ATP-dependent DNA helicase RuvA
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 231

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           +  +  L  I+GIGP     LL  F     ++ I  +  + +A   GI KK A +I
Sbjct: 96  RGLFGTLISISGIGPKAAMGLLSQFAEPELIRHIVNADAKAIARAPGIGKKTAERI 151


>gi|169838011|ref|ZP_02871199.1| Excinuclease ABC subunit C [candidate division TM7 single-cell
           isolate TM7a]
          Length = 126

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 50/119 (42%)

Query: 143 FLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKI 202
           F     +      T+PCL + +K C  PC  +   ++Y   V   K FL G +  + E +
Sbjct: 8   FPVRDCNRNMDKITKPCLKYYMKTCPAPCKYKDIEDEYSTNVSNFKNFLKGHSDKVLEML 67

Query: 203 ARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACIQTCFF 261
              M Q + + ++E AI  R++LA L  +       Y++     ++  +    + +   
Sbjct: 68  ENRMKQFSDEMEFERAINEREKLAVLKRMLETQIIEYSKEIDEDVFVFEEKGKMCSYVC 126


>gi|110597868|ref|ZP_01386151.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
 gi|110340593|gb|EAT59076.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
          Length = 674

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R+K+    L    I  +G    R L  ++ ++ ++ ++S E L+++  +   +A  I + 
Sbjct: 511 REKSYERLLYALGIRHVGRATARELSAAYPSLDLLRQASEEELSTVPDVGPIVARSIVDF 570

Query: 607 FHKNTSHT 614
           F K +S  
Sbjct: 571 FAKPSSAA 578


>gi|329912476|ref|ZP_08275756.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545605|gb|EGF30768.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
          Length = 679

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G    + L   FG + ++  ++ E L  +  +   +AC I 
Sbjct: 508 KSKSTTLARFIYALGIRHVGEATAKELAAHFGQLDIVLAATEEQLLEVADVGPVVACSIL 567

Query: 605 NHF 607
             F
Sbjct: 568 EFF 570


>gi|225847962|ref|YP_002728125.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644479|gb|ACN99529.1| holliday junction DNA helicase RuvA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 181

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACKI 603
           K  ++ L +I+G+G      +L  F ++      + +S  ++L  ++GI KK A +I
Sbjct: 64  KELFNKLTQIHGVGEKHALAILGHF-SIDEFIDILDQSDVDSLTKVQGIGKKTAQRI 119


>gi|187957728|gb|AAI50786.1| Fanconi anemia, complementation group M [Mus musculus]
          Length = 2021

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 554  YSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             S L+       I GI  +    +   F +VK ++ SSPE +++   ++ + A +IY + 
Sbjct: 1928 TSKLEALPFYLSIPGISYITALNMCHQFSSVKKMANSSPEEISTCAQVNHQKAEEIYKYI 1987

Query: 608  H 608
            H
Sbjct: 1988 H 1988


>gi|125623311|ref|YP_001031794.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|166215816|sp|A2RIF3|DNLJ_LACLM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|124492119|emb|CAL97048.1| DNA ligase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070060|gb|ADJ59460.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 686

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
            I  +G    +LLL+ F  ++ +S++S E ++ I  +   IA  + ++F   T+   T
Sbjct: 537 GIRHVGGKAAKLLLERFANLRALSQASEEEISEIPSLGGVIATAVVSYF--ETAGAKT 592


>gi|54112418|ref|NP_849243.2| Fanconi anemia group M protein homolog [Mus musculus]
 gi|78099255|sp|Q8BGE5|FANCM_MOUSE RecName: Full=Fanconi anemia group M protein homolog; Short=Protein
            FACM; AltName: Full=ATP-dependent RNA helicase FANCM
          Length = 2021

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 554  YSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             S L+       I GI  +    +   F +VK ++ SSPE +++   ++ + A +IY + 
Sbjct: 1928 TSKLEALPFYLSIPGISYITALNMCHQFSSVKKMANSSPEEISTCAQVNHQKAEEIYKYI 1987

Query: 608  H 608
            H
Sbjct: 1988 H 1988


>gi|116511279|ref|YP_808495.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
           SK11]
 gi|122940331|sp|Q031P9|DNLJ_LACLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116106933|gb|ABJ72073.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. cremoris SK11]
          Length = 686

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
            I  +G    +LLL+ F  ++ +S++S E ++ I  +   IA  + ++F   T+   T
Sbjct: 537 GIRHVGGKAAKLLLERFANLRALSQASEEEISEIPSLGGVIATAVVSYF--ETAGAKT 592


>gi|283765964|gb|ADB28380.1| excinuclease ABC subunit C [Bacillus phage 250]
          Length = 290

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G+Y + D   +++YVGKAY ++ R+ ++    ++T    H+ +++    F +  + ++  
Sbjct: 48  GIYLITDHNDKIVYVGKAYKIKTRVNAHFKGYSNTRDHAHLFNKVA---FILEDSPLKRS 104

Query: 71  LLEANMIKRLK 81
           LLE   +   K
Sbjct: 105 LLEITYMIEHK 115


>gi|169825829|ref|YP_001695987.1| DNA ligase [Lysinibacillus sphaericus C3-41]
 gi|254781361|sp|B1HTW6|DNLJ_LYSSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168990317|gb|ACA37857.1| DNA ligase [Lysinibacillus sphaericus C3-41]
          Length = 667

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 28/56 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +++ + FG+++ +  ++ E L +I  I  K+A  +  +F  + +  
Sbjct: 510 GIRHVGEKAAKIVSEQFGSMEAVMAATEEQLVAIYEIGDKMASSLVEYFSNDDARA 565


>gi|322387936|ref|ZP_08061543.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
 gi|321141209|gb|EFX36707.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
          Length = 652

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 31/49 (63%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LLLQ F +++ +++++PE +ASIE +   IA  + ++F
Sbjct: 502 GIRHVGSKASQLLLQHFHSIESLAQANPEEVASIESLGNVIAQSLQSYF 550



 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 559 EINGIGPLRKRLLLQSF-----GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+G+GP     L   F       V  I R + E    ++GI +K A K+Y     +  +
Sbjct: 436 NISGLGPSIVEKL---FAANLVKDVADIYRLTVEDFLVLDGIKEKSAQKLYQAIQASKEN 492

Query: 614 T 614
           +
Sbjct: 493 S 493


>gi|149374973|ref|ZP_01892746.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
 gi|149360862|gb|EDM49313.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
          Length = 676

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L   FGT++ IS +  + L S+  +   +A  I + F
Sbjct: 524 VGEATAKGLASYFGTLESISEADEDALQSVPDVGPIVAGHIRSFF 568


>gi|297619461|ref|YP_003707566.1| ERCC4 domain-containing protein [Methanococcus voltae A3]
 gi|297378438|gb|ADI36593.1| ERCC4 domain protein [Methanococcus voltae A3]
          Length = 822

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY-- 604
           K R+K      + +  +GP+    LL  F TV+ +  +S   L ++EG+ +  A  I   
Sbjct: 754 KERQKFLV---EGLPDVGPVMAENLLMKFDTVEDVFTASERELMTVEGVGEITAKSIRKV 810

Query: 605 --NHFHK 609
             N F+K
Sbjct: 811 ITNKFNK 817


>gi|76799924|ref|ZP_00781928.1| competence protein CelA [Streptococcus agalactiae 18RS21]
 gi|76584724|gb|EAO61478.1| competence protein CelA [Streptococcus agalactiae 18RS21]
          Length = 94

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA  S L  I+G+G  R + +L    +       + + L ++ GI +K   K+  
Sbjct: 37  KADLSSLQTISGVGAKRAQDILDYRDSQGGFK--TIDDLKNVSGIGEKTLEKLRQ 89


>gi|172036733|ref|YP_001803234.1| DNA ligase [Cyanothece sp. ATCC 51142]
 gi|254781304|sp|B1WZL6|DNLJ_CYAA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171698187|gb|ACB51168.1| DNA ligase [Cyanothece sp. ATCC 51142]
          Length = 676

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 30/45 (66%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G +   LL+++F ++  +S++S  +L+S+ G+ ++IA  I + F
Sbjct: 522 VGSVTANLLVENFPSIDQLSQASFASLSSVYGVGEEIAQSIIDWF 566


>gi|15896435|ref|NP_349784.1| DNA integrity scanning protein DisA [Clostridium acetobutylicum
           ATCC 824]
 gi|81529413|sp|Q97EC6|DISA_CLOAB RecName: Full=DNA integrity scanning protein disA
 gi|15026257|gb|AAK81124.1|AE007814_2 Predicted nucleic-acid-binding protein protein, containing HHH
           domain, YACK B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325510592|gb|ADZ22228.1| nucleic-acid-binding protein protein, containing HHH domain, YACK
           [Clostridium acetobutylicum EA 2018]
          Length = 357

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+++F  +K I  +S E L  +EGI +  A  I +   K
Sbjct: 305 IENLVKNFKELKKILEASHEDLDKVEGIGEARARAIKSGLRK 346


>gi|312136410|ref|YP_004003747.1| DNA repair and recombination protein rada [Methanothermus fervidus
           DSM 2088]
 gi|311224129|gb|ADP76985.1| DNA repair and recombination protein RadA [Methanothermus fervidus
           DSM 2088]
          Length = 311

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + L+ +  +G    + L  + FG +  I+ ++P+ LA    I + IA KI     K
Sbjct: 2   TELENLPNVGQKTAKKLRDAGFGDIMRIATATPKELAVKAEIGEGIAEKIIAAARK 57


>gi|262402686|ref|ZP_06079247.1| DNA ligase [Vibrio sp. RC586]
 gi|262351468|gb|EEZ00601.1| DNA ligase [Vibrio sp. RC586]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L Q F T++ I+++S E L  +  +   +A  ++  F
Sbjct: 520 VGEATALNLAQHFLTLEAIAQASIEQLIEVPDVGGVVASHLHAFF 564


>gi|53718203|ref|YP_107189.1| hypothetical protein BPSL0563 [Burkholderia pseudomallei K96243]
 gi|167737074|ref|ZP_02409848.1| hypothetical protein Bpse14_03361 [Burkholderia pseudomallei 14]
 gi|167814188|ref|ZP_02445868.1| hypothetical protein Bpse9_03538 [Burkholderia pseudomallei 91]
 gi|52208617|emb|CAH34553.1| hypothetical protein BPSL0563 [Burkholderia pseudomallei K96243]
          Length = 154

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%)

Query: 8  ECPGVYQM---LDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIR 59
          + PGVY            LYVGKA NL+ RIK  +++         ++ QI +  
Sbjct: 32 DVPGVYVFARKYGSRVTPLYVGKALNLKGRIKQQLNN-------LRLMRQIQDWE 79


>gi|325286330|ref|YP_004262120.1| DNA protecting protein DprA [Cellulophaga lytica DSM 7489]
 gi|324321784|gb|ADY29249.1| DNA protecting protein DprA [Cellulophaga lytica DSM 7489]
          Length = 366

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            L  I  IG +  + L+   G+   I  S    L  I+GI       I++  H + + 
Sbjct: 11  RLQSIPNIGSVTAKKLIAHCGSASQIFSSRKTDLLKIDGIGTLKLKNIFDTSHLDAAE 68


>gi|269128662|ref|YP_003302032.1| hypothetical protein Tcur_4467 [Thermomonospora curvata DSM 43183]
 gi|268313620|gb|ACY99994.1| protein of unknown function DUF147 [Thermomonospora curvata DSM
           43183]
          Length = 361

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L++ FG ++ +  +S + L S+ G+ +  A  +    
Sbjct: 312 LVEHFGGLQKLLAASIDDLQSVNGVGESRARSVREGL 348


>gi|75760809|ref|ZP_00740826.1| Endo/excinuclease amino terminal domain [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218906640|ref|YP_002454474.1| excinuclease ABC, C subunit, putative [Bacillus cereus AH820]
 gi|74491695|gb|EAO54894.1| Endo/excinuclease amino terminal domain [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218534822|gb|ACK87220.1| excinuclease ABC, C subunit, putative [Bacillus cereus AH820]
          Length = 118

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
              GVY + +     LYVG + +L+ R+ S+++      ++     ++  I    T  + 
Sbjct: 38  NGSGVYVIFNKQFEPLYVGCSKDLKTRLPSHLYKGK--RKLEGYFDEVLFIGIKYTQGDP 95

Query: 68  EALLLEANMIKRLKPRFN 85
              +LE   IKR +P  N
Sbjct: 96  T--ILERKYIKRFEPLLN 111


>gi|268564795|ref|XP_002639231.1| Hypothetical protein CBG03787 [Caenorhabditis briggsae]
          Length = 233

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            LL  FGT++ IS +S   +++  G+    A  +++  H
Sbjct: 187 RLLYHFGTLQEISTASETAISACPGVGPIKAKNLHSFLH 225


>gi|261822799|ref|YP_003260905.1| NAD-dependent DNA ligase LigA [Pectobacterium wasabiae WPP163]
 gi|261606812|gb|ACX89298.1| DNA ligase, NAD-dependent [Pectobacterium wasabiae WPP163]
          Length = 681

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 23/52 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   FG+++ +  +  + L ++  + K +A  + +   +  + T
Sbjct: 527 VGESTAANLAAHFGSLEALFAADEDALLAVPDVGKIVAAHVRHFLEEEHNQT 578


>gi|149019544|ref|ZP_01834863.1| competence protein CelA [Streptococcus pneumoniae SP23-BS72]
 gi|147930919|gb|EDK81899.1| competence protein CelA [Streptococcus pneumoniae SP23-BS72]
          Length = 216

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 14/62 (22%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA+   L ++ G+G  R + ++        F +V        + L ++ GI  K   K+ 
Sbjct: 159 KASLEELKQVKGLGGKRAQDIIDHRETNGKFKSV--------DELKTVSGIGAKTIEKLK 210

Query: 605 NH 606
           ++
Sbjct: 211 DY 212


>gi|123968602|ref|YP_001009460.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Prochlorococcus marinus str. AS9601]
 gi|123198712|gb|ABM70353.1| Helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus
           marinus str. AS9601]
          Length = 105

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L  + G+G    + L ++ F T K +  +  + L ++ G+   +  K+ N
Sbjct: 54  LTTLPGVGAKSAKALYEAGFKTTKAVIAADEKDLLAVSGVGINLVKKLKN 103


>gi|326390897|ref|ZP_08212448.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
 gi|325993045|gb|EGD51486.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
          Length = 662

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           IG    +++ + F T+  I ++  E    +  I  K+A  I + F +  +
Sbjct: 511 IGSKAAQVIAEHFKTMDNIMKAKFEDFTHLPDIGPKMARSIVSFFAEKQN 560


>gi|300813320|ref|ZP_07093675.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512591|gb|EFK39736.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 664

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R L + +      S++S + L  +  I    A +I N F
Sbjct: 510 GIANVGIKTARDLAKHYKNFMAFSKASFDDLIEVGDIGPITAKEIINFF 558


>gi|217972882|ref|YP_002357633.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
 gi|254781416|sp|B8EEK5|DNLJ_SHEB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217498017|gb|ACK46210.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
          Length = 685

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 19/45 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F ++  +  ++ E L  +E +   +A  + + F
Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTEVEDVGAVVAQHVAHFF 578


>gi|153001196|ref|YP_001366877.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
 gi|166216241|sp|A6WPS5|DNLJ_SHEB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|151365814|gb|ABS08814.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
          Length = 685

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 19/45 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F ++  +  ++ E L  +E +   +A  + + F
Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTEVEDVGAVVAQHVAHFF 578


>gi|126661546|ref|ZP_01732591.1| hypothetical protein CY0110_00975 [Cyanothece sp. CCY0110]
 gi|126617171|gb|EAZ87995.1| hypothetical protein CY0110_00975 [Cyanothece sp. CCY0110]
          Length = 251

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKS-----YMHSNNHTHRI 48
           ++P   G+Y +  +  ++LY+GKA NL+ R  S     Y   ++   RI
Sbjct: 55  KLPSQAGIYFVYTLDHQLLYIGKADNLRTRWNSHHKYQYFIESSMDSRI 103


>gi|160875869|ref|YP_001555185.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
 gi|190359285|sp|A9L5Z1|DNLJ_SHEB9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160861391|gb|ABX49925.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
 gi|315268060|gb|ADT94913.1| DNA ligase, NAD-dependent [Shewanella baltica OS678]
          Length = 685

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 19/45 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F ++  +  ++ E L  +E +   +A  + + F
Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTEVEDVGAVVAQHVAHFF 578


>gi|125974289|ref|YP_001038199.1| DNA integrity scanning protein DisA [Clostridium thermocellum ATCC
           27405]
 gi|166201836|sp|A3DGC7|DISA_CLOTH RecName: Full=DNA integrity scanning protein disA
 gi|125714514|gb|ABN53006.1| protein of unknown function DUF147 [Clostridium thermocellum ATCC
           27405]
          Length = 360

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            R L++ F  ++ I  +S E L  + GI +  A  I++   +
Sbjct: 307 IRNLVKKFSNLQGILNASIEELDDVAGIGEVRARIIWDGLRR 348


>gi|311900456|dbj|BAJ32864.1| putative DNA ligase [Kitasatospora setae KM-6054]
          Length = 718

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            + G G    R +   FG++  I  +  ETLA++EGI  + A  + +   +
Sbjct: 537 GVRGTGRSMSRRIAAHFGSMAAIRAADAETLAAVEGIGPEKARLVVSELAE 587


>gi|309389959|gb|ADO77839.1| DNA integrity scanning, DisA, linker region [Halanaerobium
           praevalens DSM 2228]
          Length = 359

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L++ F  ++ I R+S + L  ++GI +  A  I +   +
Sbjct: 307 IENLVEHFENLQAIIRASVDDLDDVDGIGEVRAQAIKDGLRR 348


>gi|307709253|ref|ZP_07645711.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
 gi|307619836|gb|EFN98954.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
          Length = 648

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ ++++ PE +ASIE +   IA  +  +F    S 
Sbjct: 498 GIRHVGNKASQLLLQHFHSIENLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 552


>gi|296128426|ref|YP_003635676.1| DNA integrity scanning, DisA, linker region [Cellulomonas flavigena
           DSM 20109]
 gi|296020241|gb|ADG73477.1| DNA integrity scanning, DisA, linker region [Cellulomonas flavigena
           DSM 20109]
          Length = 358

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG ++ +  ++ + L ++EG+ ++ A  +    
Sbjct: 308 RLVGHFGGLQKLLAATIDDLMAVEGVGEQRARSVREGL 345


>gi|229159446|ref|ZP_04287464.1| DNA ligase [Bacillus cereus R309803]
 gi|228624017|gb|EEK80825.1| DNA ligase [Bacillus cereus R309803]
          Length = 669

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDGLVKATEEELKAINEIGEKMAQSVVAYFDNED 564


>gi|227498670|ref|ZP_03928814.1| DNA ligase [Acidaminococcus sp. D21]
 gi|226904126|gb|EEH90044.1| DNA ligase [Acidaminococcus sp. D21]
          Length = 674

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 552 AAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  + LD+      I  +G    R L   + T+  +  ++ E LA I  I   IA  +  
Sbjct: 503 SKENSLDKLLFALGIRHVGAKVARTLAMKYQTMDALMEATQEELAQIPDIGPVIAESVVT 562

Query: 606 HF 607
           +F
Sbjct: 563 YF 564


>gi|226311964|ref|YP_002771858.1| hypothetical protein BBR47_23770 [Brevibacillus brevis NBRC 100599]
 gi|226094912|dbj|BAH43354.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 390

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL+ I G+GP     L +SFGT + ++ R++ E L  + G  +KIA  I   
Sbjct: 320 PLEFIPGVGPKLLDKLYRSFGTQMNVLHRATEEELTHVVG--EKIASLIVQA 369


>gi|23013561|ref|ZP_00053441.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 696

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 563 IGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNHFHKNTSHT 614
           IG    + L + +G  +    +      + L SIE I   +A  + + F +  +  
Sbjct: 539 IGEATAKRLARHYGGFQAWRDAMTEEGKDELTSIEDIGPSVAADLLDFFKEEHNRA 594


>gi|282882908|ref|ZP_06291513.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B]
 gi|281297319|gb|EFA89810.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B]
          Length = 664

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R L + +      S++S + L  +  I    A +I N F
Sbjct: 510 GIANVGIKTARDLAKHYKNFMAFSKASFDDLIEVGDIGPITAKEIINFF 558


>gi|149192011|ref|ZP_01870239.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
 gi|148834147|gb|EDL51156.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
          Length = 667

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 21/51 (41%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G      L   F T++ +  ++ + L  +  + + +A  I   F   ++ 
Sbjct: 518 VGEATAANLSTHFETLENVMNATHDQLIEVPDVGEIVAKHIRFFFAAESNQ 568


>gi|121534789|ref|ZP_01666609.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermosinus carboxydivorans Nor1]
 gi|121306584|gb|EAX47506.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermosinus carboxydivorans Nor1]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+ + LD++ GIGP   + ++    ++        E +  + GI +    +I +
Sbjct: 132 ASANELDKLPGIGPALAQRIIDYRQSIGGFK--DLEEVKKVPGIGEAKFNQIKD 183


>gi|148378173|ref|YP_001252714.1| helicase, RecD/TraA family [Clostridium botulinum A str. ATCC 3502]
 gi|153932456|ref|YP_001382573.1| RecD/TraA family helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153936042|ref|YP_001386126.1| RecD/TraA family helicase [Clostridium botulinum A str. Hall]
 gi|148287657|emb|CAL81722.1| putative DNA-interacting protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152928500|gb|ABS34000.1| helicase, RecD/TraA family [Clostridium botulinum A str. ATCC
           19397]
 gi|152931956|gb|ABS37455.1| helicase, RecD/TraA family [Clostridium botulinum A str. Hall]
          Length = 744

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611
           I+GIGP+  + +++ FG  T+  I  ++ E L  IEGI KK    IY+ +  +N 
Sbjct: 88  ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTEIEGIGKKKIEVIYDSYIKQNE 141


>gi|297618413|ref|YP_003703572.1| DNA integrity scanning, DisA, linker region [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146250|gb|ADI03007.1| DNA integrity scanning, DisA, linker region [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 363

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L+ +FG+   I R+S E L  +EGI +  A  I N   +
Sbjct: 313 NLVATFGSFSNIIRASIEELDDVEGIGEVRARSIRNGLKR 352


>gi|282889987|ref|ZP_06298522.1| hypothetical protein pah_c008o090 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500180|gb|EFB42464.1| hypothetical protein pah_c008o090 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 238

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 22/40 (55%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + ++  FG+++ ++ ++ E L  I+G+    A ++    +
Sbjct: 55  QEIMSRFGSLQNLADATIEELCQIKGLGTAKAIQLKAALN 94


>gi|289208209|ref|YP_003460275.1| ERCC4 domain protein [Thioalkalivibrio sp. K90mix]
 gi|288943840|gb|ADC71539.1| ERCC4 domain protein [Thioalkalivibrio sp. K90mix]
          Length = 215

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           KRR  A +  +  + G+ P   R LL+ FG+V+ +  +  E LA ++G+  + A +I
Sbjct: 149 KRRAAAEF-IISGLPGVEPDLARDLLRQFGSVRDVLNTDAEQLAEVDGMDLERAQRI 204


>gi|257060505|ref|YP_003138393.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
 gi|256590671|gb|ACV01558.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
          Length = 674

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 34/52 (65%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G +  +LL  +F +V+++S++S  TLAS+ G+ ++IA  +++ F    + T
Sbjct: 521 VGNVTAKLLTDNFPSVEVLSQASVPTLASVYGVGEEIAQSVFDWFKIAENQT 572


>gi|90416525|ref|ZP_01224456.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
 gi|90331724|gb|EAS46952.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
          Length = 677

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L ++FG+++ I  +  + L  ++ I   +A  I + F    +
Sbjct: 526 VGEATGQTLARNFGSLEAIIEAEQDALLEVDDIGPVVAYYIRDFFRNPDN 575


>gi|319744775|gb|EFV97115.1| competence protein CelA [Streptococcus agalactiae ATCC 13813]
          Length = 217

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA  S L  I+G+G  R + +L    +       + + L ++ GI +K   K+  
Sbjct: 160 KADLSSLQTISGVGAKRAQDILDYRDSQGGFK--TIDDLKNVSGIGEKTLEKLRQ 212


>gi|254785950|ref|YP_003073379.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
 gi|237685872|gb|ACR13136.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
          Length = 676

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G    R + Q FG +K +  +  E L +++ +   +A  I++ F +  +  
Sbjct: 526 VGQATARNIAQHFGMLKNLMDADQEALVAVDDVGPIVAHHIFDFFQQQGNRA 577


>gi|193212122|ref|YP_001998075.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
 gi|254781284|sp|B3QLI5|DNLJ_CHLP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193085599|gb|ACF10875.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
          Length = 674

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + KK +Y+ L     I  +G    R L  +  ++  +     E LA++  I   IA  I 
Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLREMGEEELAAVPDIGPVIAASIR 568

Query: 605 NHFHK 609
           + F K
Sbjct: 569 DFFAK 573


>gi|194754132|ref|XP_001959351.1| GF12823 [Drosophila ananassae]
 gi|190620649|gb|EDV36173.1| GF12823 [Drosophila ananassae]
          Length = 236

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 545 HRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           H+K       + L  I  +       LLQ+FG +  I  +S E L+ + G+  + A K++
Sbjct: 172 HQKL-----VTALTNIKPVNKTDAVTLLQTFGNLGNIITASEERLSQVIGLGPRKAKKLH 226

Query: 605 NHFHK 609
               +
Sbjct: 227 KTLQE 231


>gi|295135415|ref|YP_003586091.1| DNA ligase [Zunongwangia profunda SM-A87]
 gi|294983430|gb|ADF53895.1| DNA ligase [Zunongwangia profunda SM-A87]
          Length = 812

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G +  R + + FG +  +  ++ E L  +  + +++A  I   F    +
Sbjct: 665 VGEVSARKIAEHFGNIDKLMAANTEELIQLRDVGERVAASIIEFFTDEEN 714


>gi|257053690|ref|YP_003131523.1| NAD-dependent DNA ligase LigA [Halorhabdus utahensis DSM 12940]
 gi|256692453|gb|ACV12790.1| DNA ligase, NAD-dependent [Halorhabdus utahensis DSM 12940]
          Length = 693

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + FGT + +  +  E L +++ I  K+A +I   F
Sbjct: 551 REFGTFEAVMDADREQLQAVDDIGPKVAAEIREFF 585


>gi|88854456|ref|ZP_01129123.1| hypothetical protein A20C1_09569 [marine actinobacterium PHSC20C1]
 gi|88816264|gb|EAR26119.1| hypothetical protein A20C1_09569 [marine actinobacterium PHSC20C1]
          Length = 142

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 38/119 (31%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGK---AYNLQKRIKSYMHSNNHTHR-------------- 47
            +P  PGVY      G  +Y G+   A  L+ R+ +++       R              
Sbjct: 26  DIPIAPGVYIWF-KNGEPVYAGRAKGAKGLRDRLSNHLAKTVDLSRSTFRASVASDLLGL 84

Query: 48  ------------ITHMISQINN------IRFTVTCTEVEALLL-EANMIKRLKPRFNIL 87
                           I+ +N+      + +    + VEA +  E  +I   +P  NI 
Sbjct: 85  SRAVTTARPSVLTLDQIALVNDWISGCQLAWVECES-VEATIAFEIALISERRPPLNIQ 142


>gi|309364436|emb|CAP24618.2| CBR-ERCC-1 protein [Caenorhabditis briggsae AF16]
          Length = 251

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            LL  FGT++ IS +S   +++  G+    A  +++  H
Sbjct: 205 RLLYHFGTLQEISTASETAISACPGVGPIKAKNLHSFLH 243


>gi|299535244|ref|ZP_07048568.1| DNA ligase [Lysinibacillus fusiformis ZC1]
 gi|298729365|gb|EFI69916.1| DNA ligase [Lysinibacillus fusiformis ZC1]
          Length = 667

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +++ + FG+++ +  ++ E L +I  I  K+A  +  +F    +  
Sbjct: 510 GIRHVGEKAAKIVSEEFGSMEAVMAATEEQLVAIYEIGDKMASSLVEYFSNEDARA 565


>gi|255038855|ref|YP_003089476.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053]
 gi|254951611|gb|ACT96311.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053]
          Length = 695

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 21/83 (25%)

Query: 542 ITTHRKRRKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRS 584
           I+     R+K   + L  I               GI   G      L   F +++ +  +
Sbjct: 510 ISF----REKTVENILKGIEVSRTVPFKNVLFALGIRFVGQTVAEKLAAYFKSMRALRAA 565

Query: 585 SPETLASIEGISKKIACKIYNHF 607
           + E L ++  I  +IA  I + F
Sbjct: 566 TYEQLTAVPEIGGRIALSIESFF 588


>gi|259047691|ref|ZP_05738092.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
 gi|259035882|gb|EEW37137.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
          Length = 668

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   +    +   + L  I  +G    + L Q F  +K +  +S E L  I+G+   IA
Sbjct: 495 AIENSKANSLERLLTGL-GIRHVGTKAAKELAQHFENMKALQEASIEQLLEIDGLGDIIA 553

Query: 601 CKIYNHF 607
             +  +F
Sbjct: 554 YSVKTYF 560


>gi|256752063|ref|ZP_05492931.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749073|gb|EEU62109.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 97

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYN 605
           PL+ I  IG      L+  FG+ +  +  +  E L  +  I    A  I  
Sbjct: 27  PLEFIPNIGRKTIEKLVNYFGSELYALHHAPYEELEKV--IGPSNALNILR 75


>gi|206602206|gb|EDZ38688.1| Transcription termination factor (NusA) [Leptospirillum sp. Group
           II '5-way CG']
          Length = 452

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 554 YSPL--DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIY----NH 606
            S L  +++ G+G     +L  + F T++ I+ +S E ++++     K A K+     + 
Sbjct: 373 TSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKTAAKLIQTAQDF 432

Query: 607 FHKNTSHTP 615
             ++T  TP
Sbjct: 433 LGESTGETP 441


>gi|218961271|ref|YP_001741046.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
 gi|167729928|emb|CAO80840.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
          Length = 667

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG +  R L Q F  +  +  +  E L S+  I   IA  I   F + ++
Sbjct: 516 GIRHIGSITARTLAQHFKNIDALIMAKEEELLSVPDIGSIIARSIIGFFSQKSN 569


>gi|281355863|ref|ZP_06242357.1| DNA protecting protein DprA [Victivallis vadensis ATCC BAA-548]
 gi|281318743|gb|EFB02763.1| DNA protecting protein DprA [Victivallis vadensis ATCC BAA-548]
          Length = 380

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L+ I+G+G ++   L   FG+   + R S   L  + GI + +A KI   
Sbjct: 9   VLNMISGVGYVKYTALCDEFGSPAGVFRRSARELMHVPGIGETLAVKIAEF 59


>gi|311068958|ref|YP_003973881.1| YqxK protein [Bacillus atrophaeus 1942]
 gi|310869475|gb|ADP32950.1| YqxK [Bacillus atrophaeus 1942]
          Length = 387

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL  + G+GP     L  +FGT + ++ ++S E LA +  +S K A  I   
Sbjct: 318 PLQFVPGVGPKTLEKLKSAFGTEMSILHQASEEELAKV--VSPKTAALIVKA 367


>gi|299534484|ref|ZP_07047817.1| YqxK [Lysinibacillus fusiformis ZC1]
 gi|298730112|gb|EFI70654.1| YqxK [Lysinibacillus fusiformis ZC1]
          Length = 388

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603
           PLD I GIGP     L+++FGT   I  R + + L  I  +  K+A  I
Sbjct: 318 PLDFIPGIGPKMMERLIRAFGTEMNILHRVTIDQLEQI--VPHKLAQLI 364


>gi|281490961|ref|YP_003352941.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147]
 gi|281374719|gb|ADA64239.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147]
          Length = 654

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LLL+ F  ++ +S+++ E ++ I  +   IA  + ++F
Sbjct: 505 GIRHVGGKAAKLLLERFANLRALSKATEEEISEIPSLGGVIATAVVSYF 553


>gi|194246669|ref|YP_002004308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali]
 gi|254781388|sp|B3QZS5|DNLJ_PHYMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193807026|emb|CAP18462.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali]
          Length = 659

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L Q F  +  + ++S E+L  I+ I  K A  I N F
Sbjct: 506 GIKNVGIHLAKILAQKFENIDNLQKASIESLLKIDEIGIKSAQNIKNFF 554


>gi|15672401|ref|NP_266575.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. lactis
           Il1403]
 gi|81538437|sp|Q9CIE4|DNLJ_LACLA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|12723294|gb|AAK04517.1|AE006278_8 DNA ligase [Lactococcus lactis subsp. lactis Il1403]
 gi|326405996|gb|ADZ63067.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis CV56]
          Length = 654

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LLL+ F  ++ +S+++ E ++ I  +   IA  + ++F
Sbjct: 505 GIRHVGGKAAKLLLERFANLRALSKATEEEISEIPSLGGVIATAVVSYF 553


>gi|255009394|ref|ZP_05281520.1| putative DNA ligase [Bacteroides fragilis 3_1_12]
 gi|313147153|ref|ZP_07809346.1| DNA ligase [Bacteroides fragilis 3_1_12]
 gi|313135920|gb|EFR53280.1| DNA ligase [Bacteroides fragilis 3_1_12]
          Length = 665

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  +  +  +  ETL SI+ I +KIA  I N+F  +++
Sbjct: 515 VGETVAKKIAKSFKDIVELENADLETLVSIDEIGEKIAQSILNYFANDSN 564


>gi|198284782|ref|YP_002221103.1| PHP domain-containing protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666221|ref|YP_002427466.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198249303|gb|ACH84896.1| PHP domain protein [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518434|gb|ACK79020.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 576

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYNHFHKN 610
            + L ++ G+GP R + L       TV  ++R++ E  + SI G  +K   +I       
Sbjct: 93  LTELLKVPGLGPKRVKALWHELDVETVDQLTRAAREGRIRSIPGFGEKTEARILEALQAQ 152

Query: 611 TSHTP 615
            +  P
Sbjct: 153 IAAVP 157


>gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus]
          Length = 878

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            + GIG      LL+ FG+V+ I  +S E +
Sbjct: 194 GVPGIGEKTAVKLLKQFGSVENIL-ASIEQI 223


>gi|329121050|ref|ZP_08249681.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
 gi|327471212|gb|EGF16666.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
          Length = 666

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G     L+ + F  + ++  +S +++ S+ GI    A  IY +F    +
Sbjct: 513 GIRHLGEKGSELISEKFKDIDVLMNASVDSIKSVSGIGNITAEHIYKYFKNEKN 566


>gi|257463090|ref|ZP_05627491.1| NAD-dependent DNA ligase [Fusobacterium sp. D12]
 gi|317060689|ref|ZP_07925174.1| DNA ligase [Fusobacterium sp. D12]
 gi|313686365|gb|EFS23200.1| DNA ligase [Fusobacterium sp. D12]
          Length = 673

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G +  +LL +    +  +   + E L  IEGI  K+A  I   F   
Sbjct: 516 GIPFVGKVAAKLLAKESKNINQLQSMTEEDLKEIEGIGDKMARSIVEFFQNE 567


>gi|239624075|ref|ZP_04667106.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522106|gb|EEQ61972.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 650

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 559 EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I GIG    ++L + F +  + +  +  + L +++GI   +A    ++F    ++
Sbjct: 497 GIAGIGLANAKMLCREFKSDFEKMRHAQADELVAVDGIGGVLAQAWMDYFASEKNN 552


>gi|313891779|ref|ZP_07825384.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
 gi|313119773|gb|EFR42960.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
          Length = 666

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G     L+ + F  + ++  +S +++ S+ GI    A  IY +F    +
Sbjct: 513 GIRHLGEKGSELISEKFKDIDVLMNASVDSIKSVSGIGNITAEHIYKYFKNEKN 566


>gi|308050127|ref|YP_003913693.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
 gi|307632317|gb|ADN76619.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
          Length = 685

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 22/47 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L + F T++ +  +  + L  ++ + + +A  +Y  F +
Sbjct: 530 VGEATAANLARHFQTLEALMAADTDALIEVDDVGEVVAKHVYYFFRQ 576


>gi|86157121|ref|YP_463906.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123723230|sp|Q2INT9|DNLJ_ANADE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|85773632|gb|ABC80469.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 687

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R       L    I  +G      L + FG +  I  +  E L  +  +  + A +I   
Sbjct: 524 RSTTLRRFLFALGIPQVGEATAATLARHFGDLARILDADEEALKGVRDVGPETASEIRAW 583


>gi|320007473|gb|ADW02323.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331]
          Length = 698

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            + G G    R + + F ++  I+ +  E L  ++GI K+ A  +     +
Sbjct: 521 GVRGTGRSMSRRIARHFASMDRIAAADVEALQQVDGIGKEKAAAVVRELQE 571


>gi|52144941|ref|YP_081888.1| NAD-dependent DNA ligase LigA [Bacillus cereus E33L]
 gi|81689708|sp|Q63GS3|DNLJ_BACCZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|51978410|gb|AAU19960.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus cereus E33L]
          Length = 669

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKTINEIGEKMAQSVVAYFDNED 564


>gi|326429912|gb|EGD75482.1| hypothetical protein PTSG_06556 [Salpingoeca sp. ATCC 50818]
          Length = 216

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 549 RKKAAYSPLDEI---NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           R+    + L  I    G+G  R   L+ SF +++ + ++S + L  + G +     K++ 
Sbjct: 142 RQDLNLNLLTAIRLLPGVGEKRSMQLMHSFPSLQSLQQASKDELREMLGANGT---KLWK 198

Query: 606 HFHKNTS 612
             H  T 
Sbjct: 199 MLHGKTP 205


>gi|163856016|ref|YP_001630314.1| DNA ligase [Bordetella petrii DSM 12804]
 gi|254781264|sp|A9II69|DNLJ_BORPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163259744|emb|CAP42045.1| DNA ligase [Bordetella petrii]
          Length = 697

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R + + FG+++ I  +  E LA    +   +A  I   F +
Sbjct: 546 GIRHVGETTARDVARHFGSIETIMDADEEALAGAPDVGPVVAGSIRRFFAE 596


>gi|163788595|ref|ZP_02183040.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
 gi|159875832|gb|EDP69891.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
          Length = 664

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + + ++  +  ++   L +++ I ++IA  +   F
Sbjct: 514 VGETVAKKLAKHYKSIDALMFATTLDLIAVDEIGERIAESVVEFF 558


>gi|172056504|ref|YP_001812964.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
 gi|254781332|sp|B1YJ17|DNLJ_EXIS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171989025|gb|ACB59947.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
          Length = 664

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNT 611
           +G     LL + F ++  I+++  E + +I+GI  KIA  +  +F H   
Sbjct: 511 VGQKAAYLLAERFDSLDGIAQAEYEDILAIDGIGSKIADSVTKYFEHPEA 560


>gi|326804258|ref|YP_004322076.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651204|gb|AEA01387.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
          Length = 677

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R +  +FG+++ I  +  E +++I+GI + IA  +  +F  + 
Sbjct: 519 GIRHVGVKAARDIAMTFGSMEAIQTADREAISAIDGIGEIIADSVVEYFANDE 571


>gi|308375959|ref|ZP_07668156.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
 gi|308344705|gb|EFP33556.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
          Length = 614

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
            I  +GP   R L   FG++  I+ +S + LA++EG+ +
Sbjct: 533 SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGR 571


>gi|317128287|ref|YP_004094569.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473235|gb|ADU29838.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cellulosilyticus DSM 2522]
          Length = 201

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 556 PLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L E+ GIGP + + ++  F    G  + I     E + ++ GI +K    I  +  
Sbjct: 149 ELTELPGIGPAKAKAII-HFREENGHFQKI-----EDVVNVPGIGEKTLENIREYIR 199


>gi|315223028|ref|ZP_07864907.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
 gi|315187978|gb|EFU21714.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
          Length = 652

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    ++LL+ F  ++ ++++  E +A+++ +   IA  + ++F +  +H
Sbjct: 502 GIRHVGSKASQILLKHFHDLEQLAKAEKEEIAALDSLGMVIAESLSSYFAQEGTH 556


>gi|163755823|ref|ZP_02162941.1| comEA protein-related protein [Kordia algicida OT-1]
 gi|161324344|gb|EDP95675.1| comEA protein-related protein [Kordia algicida OT-1]
          Length = 360

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF--GTVK----MISRSSPETLASIEGISKKIACKIYN 605
              S LD++ G+ P     + + F  G VK     I++++ E L  + GI +K++ +I N
Sbjct: 198 TTKSELDKVYGLKPEVIEKIWKRFYVGEVKITKIDINKATVEELRKVYGIGEKLSVRIVN 257

Query: 606 H 606
           +
Sbjct: 258 Y 258


>gi|124515701|gb|EAY57210.1| transcription termination factor (NusA) [Leptospirillum rubarum]
          Length = 452

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 554 YSPL--DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIY----NH 606
            S L  +++ G+G     +L  + F T++ I+ +S E ++++     K A K+     + 
Sbjct: 373 TSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKTAAKLIQTAQDF 432

Query: 607 FHKNTSHTP 615
             +++  TP
Sbjct: 433 LGESSGETP 441


>gi|111225864|ref|YP_716658.1| DNA integrity scanning protein DisA [Frankia alni ACN14a]
 gi|123337921|sp|Q0RBN2|DISA_FRAAA RecName: Full=DNA integrity scanning protein disA
 gi|111153396|emb|CAJ65152.1| nucleic-acid-binding protein protein, containing HHH domain
           [Frankia alni ACN14a]
          Length = 359

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FGT++ +  +  + L +++G+ +  A  +    
Sbjct: 309 RLVDHFGTLQKLLAAGVDDLQAVDGVGETRARAVREGL 346


>gi|86742934|ref|YP_483334.1| DNA integrity scanning protein DisA [Frankia sp. CcI3]
 gi|119365932|sp|Q2J537|DISA_FRASC RecName: Full=DNA integrity scanning protein disA
 gi|86569796|gb|ABD13605.1| protein of unknown function DUF147 [Frankia sp. CcI3]
          Length = 359

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FGT++ +  +  + L +++G+ +  A  +    
Sbjct: 309 RLVDHFGTLQKLLAAGVDDLQAVDGVGETRARAVREGL 346


>gi|325961775|ref|YP_004239681.1| nucleic-acid-binding protein (contains the HHH domain)
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467862|gb|ADX71547.1| putative nucleic-acid-binding protein (contains the HHH domain)
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 358

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R     S L  +          L+  FG ++ +  ++ + L +++GI  + A  +    
Sbjct: 290 RGYRLLSGLKAVP---KAVADRLVDHFGGLQFLMAATIDDLMTVDGIGDQRARTVREGL 345


>gi|220911123|ref|YP_002486432.1| DNA integrity scanning protein DisA [Arthrobacter chlorophenolicus
           A6]
 gi|219858001|gb|ACL38343.1| protein of unknown function DUF147 [Arthrobacter chlorophenolicus
           A6]
          Length = 358

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R     S L  +          L+  FG ++ +  ++ + L +++GI  + A  +    
Sbjct: 290 RGYRLLSGLKAVP---KAVADRLVDHFGGLQFLMAATIDDLMTVDGIGDQRARTVREGL 345


>gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN]
          Length = 870

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 7/45 (15%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           D I G+   GP +   LL+ FG+V+ +     E L +++G+S+ +
Sbjct: 185 DNIPGVPGCGPKKAAALLKQFGSVEGL----LENLDAVKGLSQTM 225


>gi|254441463|ref|ZP_05054956.1| helicase, RecD/TraA family [Octadecabacter antarcticus 307]
 gi|198251541|gb|EDY75856.1| helicase, RecD/TraA family [Octadecabacter antarcticus 307]
          Length = 729

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 555 SPLDEIN---------GIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603
           S L+ I          GIGP+  + +++ FG  V  +  + PE L  +EGI  K A KI
Sbjct: 85  SSLEGIEKYLGSGMIRGIGPVYAKRMVKKFGKDVFDLIEAEPERLREVEGIGPKRADKI 143


>gi|296219607|ref|XP_002755959.1| PREDICTED: DNA repair endonuclease XPF [Callithrix jacchus]
          Length = 916

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+    ++  ++  S E L SI G +   A ++Y+  H + + 
Sbjct: 852 LLKMPGVNAKNCRSLMHHVKSIAELATLSQEELTSILG-NAANAKQLYDFIHTSYAE 907


>gi|193214336|ref|YP_001995535.1| DNA protecting protein DprA [Chloroherpeton thalassium ATCC 35110]
 gi|193087813|gb|ACF13088.1| DNA protecting protein DprA [Chloroherpeton thalassium ATCC 35110]
          Length = 386

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L +I  IG  R R LL  F + + +  +SPE +  + G S+K+  +I
Sbjct: 18  ILSQIPSIGSHRLRSLLAEFSSHREVFSASPERIRQLAGFSEKLGAEI 65


>gi|4235372|gb|AAD13189.1| NAD-dependent DNA ligase [Thermus aquaticus]
          Length = 527

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            + G+G +  R L   FG +  +  +    L  +EG+ +  A  I N   
Sbjct: 463 GLPGVGEVLARNLALRFGHMDRLLEAGLGDLLEVEGVGELTARAILNTLK 512


>gi|324324305|gb|ADY19565.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|284006788|emb|CBA72055.1| DNA ligase [Arsenophonus nasoniae]
          Length = 670

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G      L   + T+  +  +  E+L  ++ + + +A  I 
Sbjct: 502 KSKQTTLARFIYALGIREVGEATASNLAAHYTTLTSLMAADIESLKKVQDVGEIVAKHIV 561

Query: 605 NHFHK 609
           N FH+
Sbjct: 562 NFFHE 566


>gi|255067475|ref|ZP_05319330.1| DNA topoisomerase [Neisseria sicca ATCC 29256]
 gi|255048270|gb|EET43734.1| DNA topoisomerase [Neisseria sicca ATCC 29256]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 18/67 (26%)

Query: 555 SPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           S L+ + GIGP + + ++        F +V        E L +++GI       I++   
Sbjct: 34  SELEALPGIGPAKAKAIVDYRQQHGAFKSV--------EELKNVKGIG----EGIFSKLK 81

Query: 609 KNTSHTP 615
              + TP
Sbjct: 82  AEATVTP 88



 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +SP  L ++ GI    A  I ++
Sbjct: 27  NINTASPSELEALPGIGPAKAKAIVDY 53


>gi|229028145|ref|ZP_04184287.1| DNA ligase [Bacillus cereus AH1271]
 gi|228733163|gb|EEL84003.1| DNA ligase [Bacillus cereus AH1271]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|229194680|ref|ZP_04321473.1| DNA ligase [Bacillus cereus m1293]
 gi|228588783|gb|EEK46808.1| DNA ligase [Bacillus cereus m1293]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|196045221|ref|ZP_03112453.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
 gi|196023805|gb|EDX62480.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|313203539|ref|YP_004042196.1| DNA ligase, nad-dependent [Paludibacter propionicigenes WB4]
 gi|312442855|gb|ADQ79211.1| DNA ligase, NAD-dependent [Paludibacter propionicigenes WB4]
          Length = 676

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L  +F  ++ + ++S + L +++ I  +IA  +  +F
Sbjct: 513 VGETIAKKLAYAFKNIEALEQASYDELVAVDEIGGRIAQSVVAYF 557


>gi|268323600|emb|CBH37188.1| DNA ligase [uncultured archaeon]
          Length = 667

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 548 RRKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + K    S L     I  +G     LL  +F  ++ +  +S + L  I  I  ++A  I 
Sbjct: 502 KSKHTTLSRLIYALGIRHVGAHTASLLADNFSELESLRNASYDDLVHIPEIGPEVAKSII 561

Query: 605 NHFHK 609
             F +
Sbjct: 562 LFFKQ 566


>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 877

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 10/54 (18%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            + GIG      LL+ FGTV+ +  +S +    ++G       K+     ++  
Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDE---VKG------EKVKEKLRQHRD 237


>gi|88803633|ref|ZP_01119157.1| putative DNA ligase [Polaribacter irgensii 23-P]
 gi|88780366|gb|EAR11547.1| putative DNA ligase [Polaribacter irgensii 23-P]
          Length = 665

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +G    + L + F ++  +  +  E L S++ I  +IA  I + 
Sbjct: 515 VGETVAKKLAKYFKSIDNLMHAEFEVLISVDEIGDRIAQSIIDF 558


>gi|307706499|ref|ZP_07643306.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
 gi|307617954|gb|EFN97114.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
          Length = 652

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ ++++  + +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIENLAQADSDEVASIESLGSVIAKSLQTYFATEGSE 556


>gi|288572809|ref|ZP_06391166.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568550|gb|EFC90107.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 674

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G     LL++ +G+++ + R+ PE L SIEG+   IA  +   F
Sbjct: 512 GIRHVGKGVAELLVERYGSMEALRRADPEELGSIEGVGPAIAASLEAFF 560


>gi|260893633|ref|YP_003239730.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
 gi|260865774|gb|ACX52880.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
          Length = 576

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS------IEGISKKIACKIYN 605
            L ++ GIGP   +LL +  G VK +  +  E LA       + GI  K    I  
Sbjct: 92  ELLQVPGIGPKTAKLLYERLG-VKSL--AELEQLAKEGKLKGLPGIGAKTEENIRR 144



 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 552 AAYSPLDEINGIGP---LRKRLLLQSFGTVKMISRSSPE------TLASIEGISKKIACK 602
           AA   L +I GIG     +   +L + GT++       +       L  + GI  K A  
Sbjct: 48  AARGELTKIPGIGKELARKIEEILAT-GTLQKYEELKRKVPPGLVELLQVPGIGPKTAKL 106

Query: 603 IYNHF 607
           +Y   
Sbjct: 107 LYERL 111


>gi|126179861|ref|YP_001047826.1| DNA repair and recombination protein RadA [Methanoculleus
           marisnigri JR1]
 gi|166218763|sp|A3CWU4|RADA_METMJ RecName: Full=DNA repair and recombination protein radA
 gi|125862655|gb|ABN57844.1| DNA repair and recombination protein RadA [Methanoculleus
           marisnigri JR1]
          Length = 324

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           L+++ G+G      L ++ +GTV+ ++ ++   LA    I +  A K+
Sbjct: 6   LEDLPGVGATTAEKLREAGYGTVESVATATTSDLAEAAEIGEATAKKV 53


>gi|77919807|ref|YP_357622.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
 gi|123756590|sp|Q3A2F5|DNLJ_PELCD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77545890|gb|ABA89452.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
          Length = 671

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G     LL + FG++  +S ++ E L +I  I  ++A  + + F K+ +
Sbjct: 516 GIRHVGEHLASLLARQFGSLDALSHATREELLAIHEIGPQVADSVTDFFAKSRN 569


>gi|22536945|ref|NP_687796.1| competence protein CelA [Streptococcus agalactiae 2603V/R]
 gi|25010856|ref|NP_735251.1| hypothetical protein gbs0801 [Streptococcus agalactiae NEM316]
 gi|77411344|ref|ZP_00787692.1| competence protein CelA [Streptococcus agalactiae CJB111]
 gi|77413586|ref|ZP_00789773.1| competence protein CelA [Streptococcus agalactiae 515]
 gi|22533798|gb|AAM99668.1|AE014227_12 competence protein CelA [Streptococcus agalactiae 2603V/R]
 gi|23095235|emb|CAD46445.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160352|gb|EAO71476.1| competence protein CelA [Streptococcus agalactiae 515]
 gi|77162604|gb|EAO73567.1| competence protein CelA [Streptococcus agalactiae CJB111]
          Length = 217

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA  S L  I+G+G  R + +L    +       + + L ++ GI +K   K+  
Sbjct: 160 KADLSSLQTISGVGAKRAQDILDYRDSQGGFK--TIDDLKNVSGIGEKTLEKLRQ 212


>gi|229171138|ref|ZP_04298732.1| DNA ligase [Bacillus cereus MM3]
 gi|228612316|gb|EEK69544.1| DNA ligase [Bacillus cereus MM3]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|42779416|ref|NP_976663.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 10987]
 gi|81411242|sp|Q73EM3|DNLJ_BACC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|42735332|gb|AAS39271.1| DNA ligase, NAD-dependent [Bacillus cereus ATCC 10987]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|331268387|ref|YP_004394879.1| hypothetical protein CbC4_0202 [Clostridium botulinum BKT015925]
 gi|329124937|gb|AEB74882.1| protein of unknown function DUF147 [Clostridium botulinum
           BKT015925]
          Length = 354

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L +I  I       L+ +F  +K +  +S E L ++EGI +  A  I N   +
Sbjct: 291 LSKIPRIPVNVIENLVNNFKELKEVMEASYEELDNVEGIGEARAKAIKNGLRR 343


>gi|300724062|ref|YP_003713378.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297630595|emb|CBJ91260.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
          Length = 658

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 24/47 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L+  FGT++ +  +  E L +++ +   +A  + N F++
Sbjct: 506 VGETTAANLVSHFGTLEKLQAADTEALIAVQDVGGIVASHVVNFFNE 552


>gi|48249475|gb|AAT40982.1| putative DNA ligase [Xenorhabdus nematophila]
          Length = 168

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 24/47 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L+  FGT++ +  +  E L +++ +   +A  + N F++
Sbjct: 16  VGETTAANLVSHFGTLEKLQAADTEALIAVQDVGGIVASHVVNFFNE 62


>gi|253681837|ref|ZP_04862634.1| DNA integrity scanning protein DisA [Clostridium botulinum D str.
           1873]
 gi|253561549|gb|EES91001.1| DNA integrity scanning protein DisA [Clostridium botulinum D str.
           1873]
          Length = 354

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L +I  I       L+ +F  +K +  +S E L ++EGI +  A  I N   +
Sbjct: 291 LSKIPRIPVNVIENLVNNFKELKEVMEASYEELDNVEGIGEARAKAIKNGLRR 343


>gi|25144926|ref|NP_492652.2| hypothetical protein F10G8.7 [Caenorhabditis elegans]
 gi|21615452|emb|CAB02283.2| C. elegans protein F10G8.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 262

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            LL  FGT++ IS +S  ++++  G+    A  +++  H
Sbjct: 215 RLLFHFGTLQAISTASETSISACPGVGPIKAKNLHSFLH 253


>gi|300774281|ref|ZP_07084145.1| crossover junction ATP-dependent DNA helicase RuvA
           [Chryseobacterium gleum ATCC 35910]
 gi|300506925|gb|EFK38059.1| crossover junction ATP-dependent DNA helicase RuvA
           [Chryseobacterium gleum ATCC 35910]
          Length = 194

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 523 RDPILYFIQRL-RDEAHR-FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
                 FIQ++ R++AH  F    +  R +K  ++ L  +NG+G +   +LL +  ++  
Sbjct: 41  NQQTFLFIQQIIREDAHLLF--GFN-TRSEKEMFNLLISVNGVGAVSALILLSTL-SLDE 96

Query: 581 ISRS----SPETLASIEGISKKIACKI 603
           I+ +    +   +   +GI  K A +I
Sbjct: 97  IASAILSGNSALIQKAKGIGAKTAERI 123


>gi|304411949|ref|ZP_07393560.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
 gi|307303283|ref|ZP_07583038.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
 gi|304349809|gb|EFM14216.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
 gi|306913643|gb|EFN44065.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
          Length = 685

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 19/45 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F ++  +  ++ E L  +E +   +A  + + F
Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTEVEDVGTVVAQHVAHFF 578


>gi|260774893|ref|ZP_05883794.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609148|gb|EEX35306.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F T+  +  ++ E L  +  I   +A  +   F ++ +  
Sbjct: 521 VGEATAANLAQYFKTLDAVKAANHEQLIEVSDIGDIVASHVIAFFAQDKNQQ 572


>gi|94970368|ref|YP_592416.1| DNA processing protein DprA, putative [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552418|gb|ABF42342.1| DNA protecting protein DprA [Candidatus Koribacter versatilis
           Ellin345]
          Length = 385

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
             +GP R R L++ FG V+ I R+S   L +  G+    A  I
Sbjct: 22  PQLGPTRGRRLVEHFGDVERIFRASLTELEA-SGLPAASAQSI 63


>gi|77406947|ref|ZP_00783967.1| competence protein CelA [Streptococcus agalactiae H36B]
 gi|77174444|gb|EAO77293.1| competence protein CelA [Streptococcus agalactiae H36B]
          Length = 178

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA  S L  I+G+G  R + +L    +       + + L ++ GI +K   K+  
Sbjct: 121 KADLSSLQTISGVGAKRAQDILDYRDSQGGFK--TIDDLKNVSGIGEKTLEKLRQ 173


>gi|298385661|ref|ZP_06995219.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14]
 gi|298261802|gb|EFI04668.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14]
          Length = 666

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SFG +  + ++  E L SI+ I +KIA  I  +F   ++
Sbjct: 516 VGETVAKKIAKSFGDIDELQQADLEKLISIDEIGEKIARSILLYFSNESN 565


>gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
 gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
          Length = 885

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            + GIGP     LLQ FG+++ I     + L 
Sbjct: 193 GVPGIGPKTAAKLLQRFGSIEGIYE-HLDELK 223


>gi|294102358|ref|YP_003554216.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
 gi|293617338|gb|ADE57492.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
          Length = 684

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K    S L     I  +G     +L   F ++  +S +  E L+SI+G+  KIA  I   
Sbjct: 503 KNRFLSNLITALGIRLVGKKVAEILADRFHSLDALSSAQEEGLSSIDGVGPKIAASIKAF 562

Query: 607 FHKNTS 612
           F    +
Sbjct: 563 FDDEAN 568


>gi|313884927|ref|ZP_07818679.1| DNA repair protein RadC [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619618|gb|EFR31055.1| DNA repair protein RadC [Eremococcus coleocola ACS-139-V-Col8]
          Length = 229

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           LL+ F ++  + ++S E L    GI    A +I    
Sbjct: 53  LLKRFESLHELGQASIEELTQTPGIGPVKAIEIIAAL 89


>gi|294506892|ref|YP_003570950.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
 gi|294343220|emb|CBH23998.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
          Length = 691

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    RLL Q F T+  +  +  + L +I+ I  ++A  I   F  + +
Sbjct: 534 GIPLVGSATARLLAQHFDTLDALVDADEDALTTIDDIGPEVAHSIATFFADDAN 587


>gi|297570375|ref|YP_003691719.1| helicase, RecD/TraA family [Desulfurivibrio alkaliphilus AHT2]
 gi|296926290|gb|ADH87100.1| helicase, RecD/TraA family [Desulfurivibrio alkaliphilus AHT2]
          Length = 822

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           K   S L  I G+GP   R +++ FG  T+  I     + L  + GI++     I   + 
Sbjct: 85  KYLGSGL--IKGVGPKTARKIVRHFGDQTLD-IFEQEIDRLTEVPGIAEAKLKSISAAWQ 141

Query: 609 KNTS 612
           ++ +
Sbjct: 142 EHRA 145


>gi|257466592|ref|ZP_05630903.1| NAD-dependent DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917747|ref|ZP_07913987.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691622|gb|EFS28457.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 676

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G +  +LL +    +  +   + E L  IEGI +K+A  I + F   
Sbjct: 516 GIPFVGKVAAKLLAKESKNIFKLQTMTEEELQQIEGIGEKMARSIVDFFQNE 567


>gi|224369818|ref|YP_002603982.1| DprA [Desulfobacterium autotrophicum HRM2]
 gi|223692535|gb|ACN15818.1| DprA [Desulfobacterium autotrophicum HRM2]
          Length = 372

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            I GIG    + L+  F T + I  +    L +I G+S+K    I
Sbjct: 15  SIPGIGNHLYKRLINRFKTPENILAAKAAELKTIRGMSQKAITGI 59


>gi|83816597|ref|YP_445022.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
 gi|123739757|sp|Q2S459|DNLJ_SALRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|83757991|gb|ABC46104.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
          Length = 690

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    RLL Q F T+  +  +  + L +I+ I  ++A  I   F  + +
Sbjct: 534 GIPLVGSATARLLAQHFDTLDALVDADEDALTTIDDIGPEVAHSIATFFADDAN 587


>gi|125973550|ref|YP_001037460.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
 gi|256003369|ref|ZP_05428360.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
 gi|281417755|ref|ZP_06248775.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
 gi|166215580|sp|A3DE88|DNLJ_CLOTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125713775|gb|ABN52267.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
 gi|255992659|gb|EEU02750.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
 gi|281409157|gb|EFB39415.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
 gi|316940208|gb|ADU74242.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 1313]
          Length = 663

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    +LL ++F ++  +  +S E + +I    +K+A  +   F +  +
Sbjct: 511 GIRHIGLRAAQLLSENFESLDALMNASAEDIMAIPEFGEKMAKSVEQFFRQKQN 564


>gi|300717845|ref|YP_003742648.1| DNA ligase [Erwinia billingiae Eb661]
 gi|299063681|emb|CAX60801.1| DNA ligase [Erwinia billingiae Eb661]
          Length = 672

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA  + L        I+ +G      L   FG+++ I  +  + L +++ +   +A  + 
Sbjct: 502 KAKTTTLARFLYSLGISEVGEATAANLAAHFGSLEKIMAADLDALIAVQDVGTVVASHLR 561

Query: 605 NHFHKNTS 612
           N   + ++
Sbjct: 562 NFMDEESN 569


>gi|297538570|ref|YP_003674339.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
 gi|297257917|gb|ADI29762.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
          Length = 682

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + FG +  + ++   +L ++  +   +A  I N  
Sbjct: 534 VGEATAKDLAKHFGNLSALMQADAASLLTVNDVGPVVAESISNFL 578



 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGIS 596
           AIT    RR         +I G+G      L    L    T+  I + + ETL++++ ++
Sbjct: 453 AITHFASRRA-------MDIEGLGEKLVDQLVEANLVH--TLADIYQLNLETLSNLDRMA 503

Query: 597 KKIACKIYNHF 607
            K A  I +  
Sbjct: 504 TKSAQNILDAL 514


>gi|210620507|ref|ZP_03292083.1| hypothetical protein CLOHIR_00026 [Clostridium hiranonis DSM 13275]
 gi|210155317|gb|EEA86323.1| hypothetical protein CLOHIR_00026 [Clostridium hiranonis DSM 13275]
          Length = 739

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I GIG      ++  FG  T+ +I  + PE L  I+GI KK   +I   + ++
Sbjct: 88  IKGIGEKMANKIIDKFGVDTLDVIQNA-PERLQEIDGIGKKKVAQIVESYEED 139


>gi|157371681|ref|YP_001479670.1| NAD-dependent DNA ligase LigA [Serratia proteamaculans 568]
 gi|190359284|sp|A8GHF2|DNLJ_SERP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157323445|gb|ABV42542.1| DNA ligase, NAD-dependent [Serratia proteamaculans 568]
          Length = 673

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 18/48 (37%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   FGT+  +  +  E L  +  + + +A    +   + 
Sbjct: 520 VGEATAANLAAHFGTLDKLLAADIEALKEVPEVGEIVAKHTRHFLDEE 567


>gi|229165072|ref|ZP_04292867.1| DNA integrity scanning protein disA [Bacillus cereus AH621]
 gi|228618335|gb|EEK75365.1| DNA integrity scanning protein disA [Bacillus cereus AH621]
          Length = 347

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+  F T++ + R++   L  +EGI +  A KI     +
Sbjct: 295 IENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLKR 336


>gi|255691906|ref|ZP_05415581.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565]
 gi|260622459|gb|EEX45330.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565]
          Length = 666

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  +  + R+  E L SI+ I +KIA  I  +F    +
Sbjct: 516 VGETVAKKIAKSFENIDELKRADLERLVSIDEIGEKIAQSILTYFANEAN 565


>gi|229815888|ref|ZP_04446212.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM
           13280]
 gi|229808583|gb|EEP44361.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM
           13280]
          Length = 752

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G     +L Q F T+  ++ +S E +A+ EGI  KIA  +    
Sbjct: 579 GIRHVGKSVAEVLAQRFLTIDALAAASEEDIAACEGIGPKIAASVREFL 627


>gi|291557560|emb|CBL34677.1| DNA repair proteins [Eubacterium siraeum V10Sc8a]
          Length = 228

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+  FG++  +  +S   L  +EG+ +  A  I
Sbjct: 46  RLIDRFGSLSGVFSASENELCEVEGVGRSTAQMI 79


>gi|289522347|ref|ZP_06439201.1| late competence protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504183|gb|EFD25347.1| late competence protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 255

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 8/50 (16%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKI 603
           L  + GIGP   + +L      G  +     S E L  ++GI  K   KI
Sbjct: 202 LQSLPGIGPKTAQAILSYREDKGGFR-----SVEELLEVKGIGPKKMEKI 246


>gi|148704699|gb|EDL36646.1| mCG145564 [Mus musculus]
          Length = 510

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 554 YSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            S L+       I GI  +    +   F +VK ++ SSPE +++   ++ + A +IY + 
Sbjct: 417 TSKLEALPFYLSIPGISYITALNMCHQFSSVKKMANSSPEEISTCAQVNHQKAEEIYKYI 476

Query: 608 H 608
           H
Sbjct: 477 H 477


>gi|309800389|ref|ZP_07694554.1| DNA ligase [Streptococcus infantis SK1302]
 gi|308115980|gb|EFO53491.1| DNA ligase [Streptococcus infantis SK1302]
          Length = 240

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ+F +++ +++++PE +ASIE +   IA  +  +F    S 
Sbjct: 119 GIRHVGSKASQLLLQNFHSIESLAQANPEEIASIESLGSVIAQSLQTYFATEGSE 173



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 559 EINGIGPLRKRLLLQSF-----GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+G+GP   + L   F       V  I   + E L  ++GI +K A K+Y     +  +
Sbjct: 53  NISGLGPSIVKKL---FAADLVKDVADIYHLTVEDLLLLDGIKEKSAQKLYQAIQASKEN 109

Query: 614 T 614
           +
Sbjct: 110 S 110


>gi|116511836|ref|YP_809052.1| DNA repair protein [Lactococcus lactis subsp. cremoris SK11]
 gi|116107490|gb|ABJ72630.1| DNA repair protein [Lactococcus lactis subsp. cremoris SK11]
          Length = 217

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600
           LLQ FGT+    ++S   L  I GI +  A
Sbjct: 41  LLQHFGTLDNFRKASISELKEISGIGQTKA 70


>gi|254517447|ref|ZP_05129503.1| DNA integrity scanning protein disA [Clostridium sp. 7_2_43FAA]
 gi|226911196|gb|EEH96397.1| DNA integrity scanning protein disA [Clostridium sp. 7_2_43FAA]
          Length = 354

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L++ F  +K +  +  + L  ++GI +  A  I N   +
Sbjct: 302 IENLVKHFKELKYVIEADTDELDKVDGIGEARAKAIKNGLRR 343


>gi|160943191|ref|ZP_02090427.1| hypothetical protein FAEPRAM212_00677 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445430|gb|EDP22433.1| hypothetical protein FAEPRAM212_00677 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105228|emb|CBL02772.1| DNA repair proteins [Faecalibacterium prausnitzii SL3/3]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 24/82 (29%)

Query: 543 TTHRKRRKKAAYS-PLDEI-------------------NGIGPLRKRLLLQSFGTVKMIS 582
             HR+R ++   S  LD +                   NGI       L+  FG    + 
Sbjct: 8   KGHRQRMRERVQSYGLDSLAEHEALEYVLYLTNAQRDTNGI----AHDLIDRFGDFAAVL 63

Query: 583 RSSPETLASIEGISKKIACKIY 604
            +S E L ++EG+    A  ++
Sbjct: 64  EASEEELCTVEGVGPSTARMLH 85


>gi|229027931|ref|ZP_04184084.1| DNA integrity scanning protein disA [Bacillus cereus AH1271]
 gi|228733319|gb|EEL84148.1| DNA integrity scanning protein disA [Bacillus cereus AH1271]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R++   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|229159257|ref|ZP_04287281.1| DNA integrity scanning protein disA [Bacillus cereus R309803]
 gi|228624149|gb|EEK80951.1| DNA integrity scanning protein disA [Bacillus cereus R309803]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R++   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|206972259|ref|ZP_03233206.1| putative DNA-binding protein [Bacillus cereus AH1134]
 gi|218231574|ref|YP_002364933.1| DNA integrity scanning protein DisA [Bacillus cereus B4264]
 gi|228919034|ref|ZP_04082413.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228950632|ref|ZP_04112766.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229067849|ref|ZP_04201166.1| DNA integrity scanning protein disA [Bacillus cereus F65185]
 gi|229077375|ref|ZP_04210039.1| DNA integrity scanning protein disA [Bacillus cereus Rock4-2]
 gi|229148493|ref|ZP_04276749.1| DNA integrity scanning protein disA [Bacillus cereus m1550]
 gi|229176684|ref|ZP_04304088.1| DNA integrity scanning protein disA [Bacillus cereus 172560W]
 gi|226729433|sp|B7HJ22|DISA_BACC4 RecName: Full=DNA integrity scanning protein disA
 gi|206732833|gb|EDZ50008.1| putative DNA-binding protein [Bacillus cereus AH1134]
 gi|218159531|gb|ACK59523.1| putative DNA-binding protein [Bacillus cereus B4264]
 gi|228606727|gb|EEK64144.1| DNA integrity scanning protein disA [Bacillus cereus 172560W]
 gi|228634909|gb|EEK91482.1| DNA integrity scanning protein disA [Bacillus cereus m1550]
 gi|228705934|gb|EEL58256.1| DNA integrity scanning protein disA [Bacillus cereus Rock4-2]
 gi|228715208|gb|EEL67067.1| DNA integrity scanning protein disA [Bacillus cereus F65185]
 gi|228808983|gb|EEM55468.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228840559|gb|EEM85821.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R++   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|160947381|ref|ZP_02094548.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270]
 gi|158446515|gb|EDP23510.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270]
          Length = 662

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L + +  +  +  ++ E L  I  +   +A  I+  F+  
Sbjct: 507 GIKNVGIKTAKDLAKKYINLDNLRETTVEELLQINDVGDVVANSIFEFFNDE 558


>gi|30018354|ref|NP_829985.1| DNA integrity scanning protein DisA [Bacillus cereus ATCC 14579]
 gi|228956525|ref|ZP_04118321.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229040989|ref|ZP_04189752.1| DNA integrity scanning protein disA [Bacillus cereus AH676]
 gi|229107770|ref|ZP_04237406.1| DNA integrity scanning protein disA [Bacillus cereus Rock1-15]
 gi|229125601|ref|ZP_04254633.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-Cer4]
 gi|229142890|ref|ZP_04271331.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST24]
 gi|296500918|ref|YP_003662618.1| DNA integrity scanning protein DisA [Bacillus thuringiensis BMB171]
 gi|81436113|sp|Q81J64|DISA_BACCR RecName: Full=DNA integrity scanning protein disA
 gi|29893894|gb|AAP07186.1| DNA-binding protein [Bacillus cereus ATCC 14579]
 gi|228640511|gb|EEK96900.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST24]
 gi|228657793|gb|EEL13599.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-Cer4]
 gi|228675619|gb|EEL30827.1| DNA integrity scanning protein disA [Bacillus cereus Rock1-15]
 gi|228727286|gb|EEL78480.1| DNA integrity scanning protein disA [Bacillus cereus AH676]
 gi|228803090|gb|EEM49912.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296321970|gb|ADH04898.1| DNA integrity scanning protein DisA [Bacillus thuringiensis BMB171]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R++   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|30260274|ref|NP_842651.1| DNA integrity scanning protein DisA [Bacillus anthracis str. Ames]
 gi|42779164|ref|NP_976411.1| DNA integrity scanning protein DisA [Bacillus cereus ATCC 10987]
 gi|47525338|ref|YP_016687.1| DNA integrity scanning protein DisA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569818|ref|ZP_00240488.1| DNA-binding protein [Bacillus cereus G9241]
 gi|49183117|ref|YP_026369.1| DNA integrity scanning protein DisA [Bacillus anthracis str.
           Sterne]
 gi|49476705|ref|YP_034436.1| DNA integrity scanning protein DisA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52145132|ref|YP_081695.1| DNA integrity scanning protein DisA [Bacillus cereus E33L]
 gi|65317544|ref|ZP_00390503.1| COG1623: Predicted nucleic-acid-binding protein (contains the HHH
           domain) [Bacillus anthracis str. A2012]
 gi|118475854|ref|YP_893005.1| DNA integrity scanning protein DisA [Bacillus thuringiensis str. Al
           Hakam]
 gi|165873140|ref|ZP_02217756.1| putative DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167635082|ref|ZP_02393399.1| putative DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167641961|ref|ZP_02400196.1| putative DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170689564|ref|ZP_02880750.1| putative DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170707558|ref|ZP_02898011.1| putative DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177655602|ref|ZP_02936983.1| putative DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190569014|ref|ZP_03021915.1| putative DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036375|ref|ZP_03103772.1| putative DNA-binding protein [Bacillus cereus W]
 gi|196041796|ref|ZP_03109086.1| putative DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196047730|ref|ZP_03114931.1| putative DNA-binding protein [Bacillus cereus 03BB108]
 gi|218901285|ref|YP_002449119.1| putative DNA-binding protein [Bacillus cereus AH820]
 gi|225862136|ref|YP_002747514.1| putative DNA-binding protein [Bacillus cereus 03BB102]
 gi|227812757|ref|YP_002812766.1| putative DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228912823|ref|ZP_04076470.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925337|ref|ZP_04088433.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931586|ref|ZP_04094492.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943890|ref|ZP_04106275.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228983339|ref|ZP_04143552.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089215|ref|ZP_04220496.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-42]
 gi|229119746|ref|ZP_04249007.1| DNA integrity scanning protein disA [Bacillus cereus 95/8201]
 gi|229153862|ref|ZP_04281992.1| DNA integrity scanning protein disA [Bacillus cereus ATCC 4342]
 gi|229182478|ref|ZP_04309729.1| DNA integrity scanning protein disA [Bacillus cereus BGSC 6E1]
 gi|229602833|ref|YP_002864735.1| putative DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254684413|ref|ZP_05148273.1| DNA integrity scanning protein DisA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724224|ref|ZP_05186009.1| DNA integrity scanning protein DisA [Bacillus anthracis str. A1055]
 gi|254733762|ref|ZP_05191477.1| DNA integrity scanning protein DisA [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744613|ref|ZP_05202292.1| DNA integrity scanning protein DisA [Bacillus anthracis str. Kruger
           B]
 gi|254756318|ref|ZP_05208347.1| DNA integrity scanning protein DisA [Bacillus anthracis str.
           Vollum]
 gi|254758396|ref|ZP_05210423.1| DNA integrity scanning protein DisA [Bacillus anthracis str.
           Australia 94]
 gi|301051821|ref|YP_003790032.1| DNA-binding protein [Bacillus anthracis CI]
 gi|81397486|sp|Q6HPT4|DISA_BACHK RecName: Full=DNA integrity scanning protein disA
 gi|81411369|sp|Q73FC3|DISA_BACC1 RecName: Full=DNA integrity scanning protein disA
 gi|81689856|sp|Q63HB6|DISA_BACCZ RecName: Full=DNA integrity scanning protein disA
 gi|81715502|sp|Q81VV7|DISA_BACAN RecName: Full=DNA integrity scanning protein disA
 gi|166201835|sp|A0R8F5|DISA_BACAH RecName: Full=DNA integrity scanning protein disA
 gi|226729431|sp|B7JK90|DISA_BACC0 RecName: Full=DNA integrity scanning protein disA
 gi|254773048|sp|C3P9M9|DISA_BACAA RecName: Full=DNA integrity scanning protein disA
 gi|254773049|sp|C3LJ56|DISA_BACAC RecName: Full=DNA integrity scanning protein disA
 gi|254773050|sp|C1ET13|DISA_BACC3 RecName: Full=DNA integrity scanning protein disA
 gi|30253595|gb|AAP24137.1| putative DNA-binding protein [Bacillus anthracis str. Ames]
 gi|42735079|gb|AAS39019.1| DNA-binding protein, putative [Bacillus cereus ATCC 10987]
 gi|47500486|gb|AAT29162.1| putative DNA-binding protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47553511|gb|EAL11892.1| DNA-binding protein [Bacillus cereus G9241]
 gi|49177044|gb|AAT52420.1| DNA-binding protein, putative [Bacillus anthracis str. Sterne]
 gi|49328261|gb|AAT58907.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978601|gb|AAU20151.1| DNA-binding protein [Bacillus cereus E33L]
 gi|118415079|gb|ABK83498.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|164711120|gb|EDR16681.1| putative DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167510092|gb|EDR85503.1| putative DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167529556|gb|EDR92306.1| putative DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170127554|gb|EDS96428.1| putative DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170666477|gb|EDT17254.1| putative DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172080066|gb|EDT65164.1| putative DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190559938|gb|EDV13922.1| putative DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991005|gb|EDX54976.1| putative DNA-binding protein [Bacillus cereus W]
 gi|196021433|gb|EDX60139.1| putative DNA-binding protein [Bacillus cereus 03BB108]
 gi|196027416|gb|EDX66033.1| putative DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218535134|gb|ACK87532.1| putative DNA-binding protein [Bacillus cereus AH820]
 gi|225788493|gb|ACO28710.1| putative DNA-binding protein [Bacillus cereus 03BB102]
 gi|227002802|gb|ACP12545.1| putative DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228600933|gb|EEK58502.1| DNA integrity scanning protein disA [Bacillus cereus BGSC 6E1]
 gi|228629543|gb|EEK86240.1| DNA integrity scanning protein disA [Bacillus cereus ATCC 4342]
 gi|228663647|gb|EEL19226.1| DNA integrity scanning protein disA [Bacillus cereus 95/8201]
 gi|228694054|gb|EEL47736.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-42]
 gi|228776329|gb|EEM24682.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228815723|gb|EEM61959.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828014|gb|EEM73742.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834259|gb|EEM79800.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846759|gb|EEM91764.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229267241|gb|ACQ48878.1| putative DNA-binding protein [Bacillus anthracis str. A0248]
 gi|300373990|gb|ADK02894.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R++   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|315174006|gb|EFU18023.1| comEA protein [Enterococcus faecalis TX1346]
          Length = 182

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 125 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 176

Query: 606 HF 607
             
Sbjct: 177 ML 178


>gi|315166355|gb|EFU10372.1| comEA protein [Enterococcus faecalis TX1341]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|315164894|gb|EFU08911.1| comEA protein [Enterococcus faecalis TX1302]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|315161634|gb|EFU05651.1| comEA protein [Enterococcus faecalis TX0645]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|315032943|gb|EFT44875.1| comEA protein [Enterococcus faecalis TX0017]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|315030172|gb|EFT42104.1| comEA protein [Enterococcus faecalis TX4000]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|315025364|gb|EFT37296.1| comEA protein [Enterococcus faecalis TX2137]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|312899879|ref|ZP_07759197.1| comEA protein [Enterococcus faecalis TX0470]
 gi|311292875|gb|EFQ71431.1| comEA protein [Enterococcus faecalis TX0470]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|312905173|ref|ZP_07764294.1| comEA protein [Enterococcus faecalis TX0635]
 gi|310631563|gb|EFQ14846.1| comEA protein [Enterococcus faecalis TX0635]
 gi|315579111|gb|EFU91302.1| comEA protein [Enterococcus faecalis TX0630]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|307285768|ref|ZP_07565902.1| comEA protein [Enterococcus faecalis TX0860]
 gi|306502529|gb|EFM71796.1| comEA protein [Enterococcus faecalis TX0860]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|300857271|ref|YP_003782255.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300437386|gb|ADK17153.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 354

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L++I  I       L+++F  +K +  +S E L  +EGI +  A  I N   +
Sbjct: 291 LNKIPRIPTNVIENLVKNFKELKGVMEASYEQLDRVEGIGEARARAIKNGLRR 343


>gi|294780838|ref|ZP_06746193.1| comEA protein [Enterococcus faecalis PC1.1]
 gi|294452083|gb|EFG20530.1| comEA protein [Enterococcus faecalis PC1.1]
          Length = 214

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 157 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 208

Query: 606 HF 607
             
Sbjct: 209 ML 210


>gi|257421910|ref|ZP_05598900.1| competence protein comEA [Enterococcus faecalis X98]
 gi|257163734|gb|EEU93694.1| competence protein comEA [Enterococcus faecalis X98]
 gi|315155383|gb|EFT99399.1| comEA protein [Enterococcus faecalis TX0043]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|257416686|ref|ZP_05593680.1| competence protein comEA [Enterococcus faecalis AR01/DG]
 gi|257158514|gb|EEU88474.1| competence protein comEA [Enterococcus faecalis ARO1/DG]
          Length = 211

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205

Query: 606 HF 607
             
Sbjct: 206 ML 207


>gi|257090638|ref|ZP_05584999.1| competence protein comEA [Enterococcus faecalis CH188]
 gi|256999450|gb|EEU85970.1| competence protein comEA [Enterococcus faecalis CH188]
          Length = 211

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205

Query: 606 HF 607
             
Sbjct: 206 ML 207


>gi|257087479|ref|ZP_05581840.1| competence protein comEA [Enterococcus faecalis D6]
 gi|256995509|gb|EEU82811.1| competence protein comEA [Enterococcus faecalis D6]
          Length = 211

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205

Query: 606 HF 607
             
Sbjct: 206 ML 207


>gi|257084525|ref|ZP_05578886.1| competence protein CelA [Enterococcus faecalis Fly1]
 gi|256992555|gb|EEU79857.1| competence protein CelA [Enterococcus faecalis Fly1]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|257081973|ref|ZP_05576334.1| competence protein comEA [Enterococcus faecalis E1Sol]
 gi|256990003|gb|EEU77305.1| competence protein comEA [Enterococcus faecalis E1Sol]
          Length = 211

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205

Query: 606 HF 607
             
Sbjct: 206 ML 207


>gi|257079680|ref|ZP_05574041.1| competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecalis JH1]
 gi|256987710|gb|EEU75012.1| competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecalis JH1]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|256961257|ref|ZP_05565428.1| competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecalis Merz96]
 gi|293383541|ref|ZP_06629451.1| competence protein comEA [Enterococcus faecalis R712]
 gi|293387346|ref|ZP_06631902.1| competence protein comEA [Enterococcus faecalis S613]
 gi|312906091|ref|ZP_07765103.1| comEA protein [Enterococcus faecalis DAPTO 512]
 gi|312909437|ref|ZP_07768292.1| comEA protein [Enterococcus faecalis DAPTO 516]
 gi|256951753|gb|EEU68385.1| competence protein ComEA helix-hairpin-helix region [Enterococcus
           faecalis Merz96]
 gi|291079053|gb|EFE16417.1| competence protein comEA [Enterococcus faecalis R712]
 gi|291083244|gb|EFE20207.1| competence protein comEA [Enterococcus faecalis S613]
 gi|310627737|gb|EFQ11020.1| comEA protein [Enterococcus faecalis DAPTO 512]
 gi|311290110|gb|EFQ68666.1| comEA protein [Enterococcus faecalis DAPTO 516]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|256853809|ref|ZP_05559174.1| competence protein comEA [Enterococcus faecalis T8]
 gi|307290497|ref|ZP_07570410.1| comEA protein [Enterococcus faecalis TX0411]
 gi|256710752|gb|EEU25795.1| competence protein comEA [Enterococcus faecalis T8]
 gi|306498444|gb|EFM67948.1| comEA protein [Enterococcus faecalis TX0411]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|256763141|ref|ZP_05503721.1| competence protein comEA [Enterococcus faecalis T3]
 gi|256684392|gb|EEU24087.1| competence protein comEA [Enterococcus faecalis T3]
          Length = 211

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205

Query: 606 HF 607
             
Sbjct: 206 ML 207


>gi|255975151|ref|ZP_05425737.1| competence protein comEA [Enterococcus faecalis T2]
 gi|255968023|gb|EET98645.1| competence protein comEA [Enterococcus faecalis T2]
          Length = 211

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 205

Query: 606 HF 607
             
Sbjct: 206 ML 207


>gi|255972084|ref|ZP_05422670.1| predicted protein [Enterococcus faecalis T1]
 gi|255963102|gb|EET95578.1| predicted protein [Enterococcus faecalis T1]
          Length = 220

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 163 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 214

Query: 606 HF 607
             
Sbjct: 215 ML 216


>gi|229549378|ref|ZP_04438103.1| competence protein comEA [Enterococcus faecalis ATCC 29200]
 gi|307270791|ref|ZP_07552081.1| comEA protein [Enterococcus faecalis TX4248]
 gi|307287671|ref|ZP_07567714.1| comEA protein [Enterococcus faecalis TX0109]
 gi|312953530|ref|ZP_07772368.1| comEA protein [Enterococcus faecalis TX0102]
 gi|229305615|gb|EEN71611.1| competence protein comEA [Enterococcus faecalis ATCC 29200]
 gi|306501409|gb|EFM70712.1| comEA protein [Enterococcus faecalis TX0109]
 gi|306512905|gb|EFM81547.1| comEA protein [Enterococcus faecalis TX4248]
 gi|310628542|gb|EFQ11825.1| comEA protein [Enterococcus faecalis TX0102]
 gi|315152020|gb|EFT96036.1| comEA protein [Enterococcus faecalis TX0031]
 gi|315159041|gb|EFU03058.1| comEA protein [Enterococcus faecalis TX0312]
 gi|329572336|gb|EGG53993.1| comEA protein [Enterococcus faecalis TX1467]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|229170935|ref|ZP_04298536.1| DNA integrity scanning protein disA [Bacillus cereus MM3]
 gi|228612475|gb|EEK69696.1| DNA integrity scanning protein disA [Bacillus cereus MM3]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R++   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|229188369|ref|ZP_04315417.1| DNA integrity scanning protein disA [Bacillus cereus ATCC 10876]
 gi|228595043|gb|EEK52814.1| DNA integrity scanning protein disA [Bacillus cereus ATCC 10876]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R++   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|227553982|ref|ZP_03984029.1| competence protein comEA [Enterococcus faecalis HH22]
 gi|227176885|gb|EEI57857.1| competence protein comEA [Enterococcus faecalis HH22]
 gi|315170252|gb|EFU14269.1| comEA protein [Enterococcus faecalis TX1342]
 gi|315574318|gb|EFU86509.1| comEA protein [Enterococcus faecalis TX0309B]
 gi|315580207|gb|EFU92398.1| comEA protein [Enterococcus faecalis TX0309A]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|227519833|ref|ZP_03949882.1| competence protein comEA [Enterococcus faecalis TX0104]
 gi|227072723|gb|EEI10686.1| competence protein comEA [Enterococcus faecalis TX0104]
          Length = 225

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|206978359|ref|ZP_03239232.1| putative DNA-binding protein [Bacillus cereus H3081.97]
 gi|217957660|ref|YP_002336202.1| DNA integrity scanning protein DisA [Bacillus cereus AH187]
 gi|222093854|ref|YP_002527904.1| DNA integrity scanning protein disa [Bacillus cereus Q1]
 gi|229136930|ref|ZP_04265557.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST26]
 gi|229194474|ref|ZP_04321277.1| DNA integrity scanning protein disA [Bacillus cereus m1293]
 gi|226729434|sp|B7HQR7|DISA_BACC7 RecName: Full=DNA integrity scanning protein disA
 gi|254773051|sp|B9IZG8|DISA_BACCQ RecName: Full=DNA integrity scanning protein disA
 gi|206743420|gb|EDZ54854.1| putative DNA-binding protein [Bacillus cereus H3081.97]
 gi|217067488|gb|ACJ81738.1| putative DNA-binding protein [Bacillus cereus AH187]
 gi|221237902|gb|ACM10612.1| DNA-binding protein [Bacillus cereus Q1]
 gi|228588940|gb|EEK46955.1| DNA integrity scanning protein disA [Bacillus cereus m1293]
 gi|228646468|gb|EEL02675.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST26]
 gi|324324073|gb|ADY19333.1| DNA integrity scanning protein DisA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R++   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|29376943|ref|NP_816097.1| competence protein comEA [Enterococcus faecalis V583]
 gi|29344408|gb|AAO82167.1| competence protein comEA [Enterococcus faecalis V583]
          Length = 214

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 157 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 208

Query: 606 HF 607
             
Sbjct: 209 ML 210


>gi|300071102|gb|ADJ60502.1| DNA repair protein RadC [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 217

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600
           LLQ FGT+    ++S   L  I GI +  A
Sbjct: 41  LLQHFGTLDNFRKASISELKEISGIGQTKA 70


>gi|172037937|ref|YP_001804438.1| DNA processing protein [Cyanothece sp. ATCC 51142]
 gi|171699391|gb|ACB52372.1| DNA processing protein [Cyanothece sp. ATCC 51142]
          Length = 374

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +I G+GP+  + + Q FG+++   ++S   L  +EGI  K+   I  
Sbjct: 13  KIPGVGPVLLKRVWQQFGSLETAWKTSATELGQVEGIGAKLLNTIKQ 59


>gi|89895070|ref|YP_518557.1| hypothetical protein DSY2324 [Desulfitobacterium hafniense Y51]
 gi|219669482|ref|YP_002459917.1| hypothetical protein Dhaf_3463 [Desulfitobacterium hafniense DCB-2]
 gi|89334518|dbj|BAE84113.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539742|gb|ACL21481.1| conserved hypothetical protein [Desulfitobacterium hafniense DCB-2]
          Length = 387

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PL ++ GIGP   R LLQ FGT + ++ +   E L  + G  +K A  I
Sbjct: 315 PLKDLPGIGPKMVRNLLQHFGTEMNVLHQVPGEELVKVAG--EKAARWI 361


>gi|300119605|ref|ZP_07057149.1| DNA integrity scanning protein DisA [Bacillus cereus SJ1]
 gi|298723077|gb|EFI63975.1| DNA integrity scanning protein DisA [Bacillus cereus SJ1]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R++   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|47564267|ref|ZP_00235312.1| UvrC-like protein [Bacillus cereus G9241]
 gi|47558419|gb|EAL16742.1| UvrC-like protein [Bacillus cereus G9241]
          Length = 213

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 22/31 (70%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHS 41
          G+Y + D    ++Y+GKA++++ R+ ++ +S
Sbjct: 22 GIYFIKDYNENIIYIGKAFSIKSRVLAHFNS 52


>gi|256826919|ref|YP_003150878.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
 gi|256583062|gb|ACU94196.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
          Length = 725

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G      + Q++ +++ +  +  + LA+IEGI   IA  ++    
Sbjct: 540 GIRHVGKTTAEAIAQAYPSIEALREAKMDDLAAIEGIGPIIAESLFVFLR 589


>gi|229095009|ref|ZP_04226005.1| DNA ligase [Bacillus cereus Rock3-29]
 gi|229113962|ref|ZP_04243388.1| DNA ligase [Bacillus cereus Rock1-3]
 gi|228669421|gb|EEL24837.1| DNA ligase [Bacillus cereus Rock1-3]
 gi|228688339|gb|EEL42221.1| DNA ligase [Bacillus cereus Rock3-29]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L SI  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKSINEIGEKMAQSVVTYFDNED 564


>gi|222153373|ref|YP_002562550.1| competence protein [Streptococcus uberis 0140J]
 gi|222114186|emb|CAR42718.1| putative competence protein [Streptococcus uberis 0140J]
          Length = 226

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA    L +I GIG  R + +L +  +       S + L +I GI +K   KI N
Sbjct: 169 KATIEDLRKIPGIGEKRAQEILDARDSKGGFK--SIDDLLTISGIGQKTLEKIKN 221



 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I++++ E L  I GI +K A +I + 
Sbjct: 166 NINKATIEDLRKIPGIGEKRAQEILDA 192


>gi|163938091|ref|YP_001642975.1| DNA integrity scanning protein DisA [Bacillus weihenstephanensis
           KBAB4]
 gi|229009593|ref|ZP_04166819.1| DNA integrity scanning protein disA [Bacillus mycoides DSM 2048]
 gi|229053930|ref|ZP_04195364.1| DNA integrity scanning protein disA [Bacillus cereus AH603]
 gi|229131091|ref|ZP_04260003.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST196]
 gi|226729435|sp|A9VN96|DISA_BACWK RecName: Full=DNA integrity scanning protein disA
 gi|163860288|gb|ABY41347.1| protein of unknown function DUF147 [Bacillus weihenstephanensis
           KBAB4]
 gi|228652304|gb|EEL08229.1| DNA integrity scanning protein disA [Bacillus cereus BDRD-ST196]
 gi|228721348|gb|EEL72869.1| DNA integrity scanning protein disA [Bacillus cereus AH603]
 gi|228751615|gb|EEM01415.1| DNA integrity scanning protein disA [Bacillus mycoides DSM 2048]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+  F T++ + R++   L  +EGI +  A KI     +
Sbjct: 305 IENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLKR 346


>gi|257094042|ref|YP_003167683.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046566|gb|ACV35754.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 484

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
           + +PE  G Y  L   GR L V +  N+++++ ++  + N   R T +I     I +   
Sbjct: 202 DDLPEAAGAYAFLGADGRRLLVRRTGNVRQQVLAHFAAAN---RDTALIRDTWRIEWRDA 258

Query: 64  CTEVEALLLEANM 76
             EV A L E  +
Sbjct: 259 AGEVGARLHEIEL 271


>gi|229824042|ref|ZP_04450111.1| hypothetical protein GCWU000282_01346 [Catonella morbi ATCC 51271]
 gi|229786396|gb|EEP22510.1| hypothetical protein GCWU000282_01346 [Catonella morbi ATCC 51271]
          Length = 222

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           A  S L+ + GIG  + + ++           +     S E L  ++GI  K+  K+ +
Sbjct: 166 ADLSQLETLPGIGAKKAQAIIDY-------RTANGSFHSLEDLGKVKGIGPKLLDKLRD 217


>gi|229015486|ref|ZP_04172484.1| DNA integrity scanning protein disA [Bacillus cereus AH1273]
 gi|229021695|ref|ZP_04178277.1| DNA integrity scanning protein disA [Bacillus cereus AH1272]
 gi|228739563|gb|EEL89977.1| DNA integrity scanning protein disA [Bacillus cereus AH1272]
 gi|228745773|gb|EEL95777.1| DNA integrity scanning protein disA [Bacillus cereus AH1273]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+  F T++ + R++   L  +EGI +  A KI     +
Sbjct: 305 IENLINRFKTLQGVCRATINELDDVEGIGEVRAKKIREGLKR 346


>gi|229101110|ref|ZP_04231876.1| DNA ligase [Bacillus cereus Rock3-28]
 gi|228682238|gb|EEL36349.1| DNA ligase [Bacillus cereus Rock3-28]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L SI  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDALVKATEEELKSINEIGEKMAQSVVTYFDNED 564


>gi|167753798|ref|ZP_02425925.1| hypothetical protein ALIPUT_02083 [Alistipes putredinis DSM 17216]
 gi|167658423|gb|EDS02553.1| hypothetical protein ALIPUT_02083 [Alistipes putredinis DSM 17216]
          Length = 370

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            GIGP     LL  FG+ + +  +S + L     +  ++A  I  
Sbjct: 14  PGIGPKGAVHLLDVFGSAEAVFSASADELIEKARLRPELARAILQ 58


>gi|313887872|ref|ZP_07821551.1| comEA protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846038|gb|EFR33420.1| comEA protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 216

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 13/61 (21%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606
           A  S L +I G+G    + ++          R+     S E + ++ GI  K    + ++
Sbjct: 161 ADLSELTKIPGVGEKTAQKIIDY--------RANNSFSSIEDIKNVPGIGDKKFESMKDY 212

Query: 607 F 607
            
Sbjct: 213 I 213



 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +    L  I G+ +K A KI ++
Sbjct: 157 NINSADLSELTKIPGVGEKTAQKIIDY 183


>gi|229042193|ref|ZP_04189947.1| DNA ligase [Bacillus cereus AH676]
 gi|228727128|gb|EEL78331.1| DNA ligase [Bacillus cereus AH676]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|229188563|ref|ZP_04315602.1| DNA ligase [Bacillus cereus ATCC 10876]
 gi|228594752|gb|EEK52532.1| DNA ligase [Bacillus cereus ATCC 10876]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|332638256|ref|ZP_08417119.1| Holliday junction DNA helicase RuvA [Weissella cibaria KACC 11862]
          Length = 199

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           K  +  L  ++GIGP     +L      G V+ I+ +    L    GI KK A +I    
Sbjct: 66  KLLFQKLLNVSGIGPKSALAILANADHTGLVQAIADNDITFLTKFPGIGKKTAQQIVLDL 125

Query: 608 HKNTSHTP 615
                  P
Sbjct: 126 QNKLGDLP 133


>gi|301063436|ref|ZP_07203968.1| transcription termination factor NusA [delta proteobacterium
           NaphS2]
 gi|300442375|gb|EFK06608.1| transcription termination factor NusA [delta proteobacterium
           NaphS2]
          Length = 474

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
            L ++NG+G      L  + F + + I+ S+ E L  ++GIS++ A  +
Sbjct: 353 SLLDLNGVGEKIATELYDADFRSARDIAGSTVEDLMVVKGISQEKAEAL 401


>gi|224369440|ref|YP_002603604.1| RecD1 [Desulfobacterium autotrophicum HRM2]
 gi|223692157|gb|ACN15440.1| RecD1 [Desulfobacterium autotrophicum HRM2]
          Length = 826

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I G+GP   + +++ F   T+  +   S E L  + GI++K    I
Sbjct: 93  KYIGSGL--IKGVGPKTAKKIVRHFNDQTLD-VFEQSIERLTEVPGIARKRLKTI 144


>gi|154498024|ref|ZP_02036402.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
           29799]
 gi|150273014|gb|EDN00171.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
           29799]
          Length = 664

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 22/51 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G    ++L   F T+  +  ++ E   ++  +    A  +++  H + S 
Sbjct: 512 VGQKAGKILASHFSTMDALLAATEEDFTAVPDVGAITAKSLWDWLHSHQSQ 562


>gi|307132386|ref|YP_003884402.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
 gi|306529915|gb|ADM99845.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
          Length = 683

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 20/47 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FGT++ +  +  E L  ++ +   +A  + N   +
Sbjct: 531 VGEATAASLASHFGTLEALQSADLEALQQVQDVGIVVATHVRNFLDE 577


>gi|255020220|ref|ZP_05292289.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
           DNA uptake [Acidithiobacillus caldus ATCC 51756]
 gi|254970362|gb|EET27855.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
           DNA uptake [Acidithiobacillus caldus ATCC 51756]
          Length = 364

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 13/48 (27%)

Query: 560 INGIGPLRKRLLLQSFGTVKM-------------ISRSSPETLASIEG 594
           I G+GP+R+R LLQ FG+V               + R+    L    G
Sbjct: 12  IPGLGPVRQRALLQHFGSVAACFGRGTAELAELGLGRAQVAQLQKDPG 59


>gi|228906068|ref|ZP_04069957.1| DNA ligase [Bacillus thuringiensis IBL 200]
 gi|228853477|gb|EEM98245.1| DNA ligase [Bacillus thuringiensis IBL 200]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|332829049|gb|EGK01713.1| DNA ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 665

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    + L  +F  +  +  +S E L  ++ I  +IA  I  +F +
Sbjct: 515 VGETVAKKLALAFPNIDALMAASAEELVQVDEIGDRIAQSIVRYFSE 561


>gi|228919228|ref|ZP_04082598.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840335|gb|EEM85606.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|228937587|ref|ZP_04100225.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228970474|ref|ZP_04131125.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228977043|ref|ZP_04137446.1| DNA ligase [Bacillus thuringiensis Bt407]
 gi|228782660|gb|EEM30835.1| DNA ligase [Bacillus thuringiensis Bt407]
 gi|228789206|gb|EEM37134.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228822068|gb|EEM68058.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326938080|gb|AEA13976.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|229107967|ref|ZP_04237594.1| DNA ligase [Bacillus cereus Rock1-15]
 gi|228675470|gb|EEL30687.1| DNA ligase [Bacillus cereus Rock1-15]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|228956728|ref|ZP_04118514.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229143090|ref|ZP_04271523.1| DNA ligase [Bacillus cereus BDRD-ST24]
 gi|296501121|ref|YP_003662821.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
 gi|228640363|gb|EEK96760.1| DNA ligase [Bacillus cereus BDRD-ST24]
 gi|228802916|gb|EEM49748.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296322173|gb|ADH05101.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|206967609|ref|ZP_03228565.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
 gi|228950848|ref|ZP_04112971.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|229068048|ref|ZP_04201356.1| DNA ligase [Bacillus cereus F65185]
 gi|229077651|ref|ZP_04210281.1| DNA ligase [Bacillus cereus Rock4-2]
 gi|229176884|ref|ZP_04304280.1| DNA ligase [Bacillus cereus 172560W]
 gi|206736529|gb|EDZ53676.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
 gi|228606557|gb|EEK63982.1| DNA ligase [Bacillus cereus 172560W]
 gi|228705592|gb|EEL57948.1| DNA ligase [Bacillus cereus Rock4-2]
 gi|228715056|gb|EEL66923.1| DNA ligase [Bacillus cereus F65185]
 gi|228808777|gb|EEM55273.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|126661533|ref|ZP_01732580.1| hypothetical protein CY0110_05067 [Cyanothece sp. CCY0110]
 gi|126617186|gb|EAZ88008.1| hypothetical protein CY0110_05067 [Cyanothece sp. CCY0110]
          Length = 212

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 13/74 (17%)

Query: 5  QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIK-----SYMHSNNHTHRIT--------HM 51
          ++P+ PG+Y +  +   +LY+GKA NL+ R        Y    +   RI         ++
Sbjct: 16 KLPKLPGIYFVYTLDHNLLYIGKADNLRTRWNNHHKYQYFIETSIESRIGYFTFDSIDNL 75

Query: 52 ISQINNIRFTVTCT 65
             I       T T
Sbjct: 76 NETIEEFESEPTET 89


>gi|30018549|ref|NP_830180.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 14579]
 gi|229125792|ref|ZP_04254818.1| DNA ligase [Bacillus cereus BDRD-Cer4]
 gi|81436035|sp|Q81IP2|DNLJ_BACCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|29894090|gb|AAP07381.1| NAD-dependent DNA ligase [Bacillus cereus ATCC 14579]
 gi|228657649|gb|EEL13461.1| DNA ligase [Bacillus cereus BDRD-Cer4]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|75759916|ref|ZP_00739987.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228899023|ref|ZP_04063296.1| DNA ligase [Bacillus thuringiensis IBL 4222]
 gi|74492583|gb|EAO55728.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860598|gb|EEN04985.1| DNA ligase [Bacillus thuringiensis IBL 4222]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|325570045|ref|ZP_08145970.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
           12755]
 gi|325156873|gb|EGC69044.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
           12755]
          Length = 687

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R+L + FG ++ +S++  E + S+E I   IA  +  +F    
Sbjct: 524 GIRHVGAKAARILAEHFGDLRTLSKAKEEEIISLETIGATIAESVVTYFDNQE 576


>gi|320103360|ref|YP_004178951.1| DNA protecting protein DprA [Isosphaera pallida ATCC 43644]
 gi|319750642|gb|ADV62402.1| DNA protecting protein DprA [Isosphaera pallida ATCC 43644]
          Length = 453

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L+ + G+G +    LL+ FG    I R+S   L  I  +  K+   + +   
Sbjct: 22  RLNMVPGVGAVTLAALLERFGDPSSILRASAHDLQGIPHVGPKVIDGLRSALR 74


>gi|189485424|ref|YP_001956365.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|254781446|sp|B1H072|DNLJ_UNCTG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|170287383|dbj|BAG13904.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 674

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK   S L     I  IG     ++ + F +++ +  +S E    +  I   +A  +   
Sbjct: 501 KKHPLSKLLFALGIRRIGEKVSEIIAKKFKSMEALFNASIEDFTRVPEIGSILALSLKEF 560

Query: 607 FHKNT 611
           F   T
Sbjct: 561 FENKT 565


>gi|42519595|ref|NP_965525.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
 gi|81667534|sp|Q74I49|DNLJ_LACJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|41583884|gb|AAS09491.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
          Length = 668

 Score = 46.3 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+ +G    RL+L+ +  ++ +S+ +   L SI+ I + IA  +  +F++ ++ 
Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567


>gi|300858287|ref|YP_003783270.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685741|gb|ADK28663.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206007|gb|ADL10349.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           C231]
 gi|302330560|gb|ADL20754.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           1002]
 gi|308276242|gb|ADO26141.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
           I19]
          Length = 694

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   + ++  +  +S E +A  EG+   IA    + F
Sbjct: 539 SIRHVGPTAARALASRYHSMDALREASAEEIADTEGVGAIIAQSFKDWF 587


>gi|218230787|ref|YP_002365135.1| NAD-dependent DNA ligase LigA [Bacillus cereus B4264]
 gi|254781552|sp|B7H4U8|DNLJ_BACC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218158744|gb|ACK58736.1| DNA ligase (NAD(+)) [Bacillus cereus B4264]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|218248171|ref|YP_002373542.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 8801]
 gi|254781307|sp|B7K0A2|DNLJ_CYAP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218168649|gb|ACK67386.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8801]
          Length = 674

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 32/46 (69%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +G +  +LL  +F +V+++S++S  TLAS+ G+ ++IA  +++ F 
Sbjct: 521 VGNVTAKLLTDNFPSVEVLSQASVPTLASVYGVGEEIAQSVFDWFK 566


>gi|218895413|ref|YP_002443824.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
 gi|228963387|ref|ZP_04124548.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|254781550|sp|B7IUW5|DNLJ_BACC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218545091|gb|ACK97485.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
 gi|228796281|gb|EEM43728.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 669

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKAINEIGEKMAQSVVTYFDNED 564


>gi|166157967|ref|NP_001107393.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence) [Xenopus (Silurana) tropicalis]
 gi|163916074|gb|AAI57332.1| LOC100135224 protein [Xenopus (Silurana) tropicalis]
 gi|213625729|gb|AAI71208.1| hypothetical protein LOC100135224 [Xenopus (Silurana) tropicalis]
 gi|213627374|gb|AAI71206.1| hypothetical protein LOC100135224 [Xenopus (Silurana) tropicalis]
          Length = 268

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L  +FGT+  ++ +S E L+   G+  + A ++Y+ FH+
Sbjct: 219 LFTTFGTLFDLANASREDLSLCPGLGPQKAKRLYDTFHE 257


>gi|126660781|ref|ZP_01731877.1| hypothetical protein CY0110_14235 [Cyanothece sp. CCY0110]
 gi|126617925|gb|EAZ88698.1| hypothetical protein CY0110_14235 [Cyanothece sp. CCY0110]
          Length = 350

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 4  EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVT 63
          +Q+P   G+Y ++D    + Y+G+A NLQ R       +   HR+  + SQ   I+FT+ 
Sbjct: 19 KQLPLVSGIYYVIDQNDVIWYIGQAKNLQAR-----WKSQSHHRLFQLKSQ-KKIKFTIY 72

Query: 64 CTEVEALLL---EANMIKRLKPRFN 85
             +E+  L   E   I +  P  N
Sbjct: 73 YQILESSKLNEVEQKEIAKYHPHLN 97


>gi|329667842|gb|AEB93790.1| NAD-dependent DNA ligase [Lactobacillus johnsonii DPC 6026]
          Length = 668

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+ +G    RL+L+ +  ++ +S+ +   L SI+ I + IA  +  +F++ ++ 
Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567


>gi|282851211|ref|ZP_06260576.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
 gi|282557179|gb|EFB62776.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
          Length = 668

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+ +G    RL+L+ +  ++ +S+ +   L SI+ I + IA  +  +F++ ++ 
Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567


>gi|227889453|ref|ZP_04007258.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
 gi|227849931|gb|EEJ60017.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
          Length = 668

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+ +G    RL+L+ +  ++ +S+ +   L SI+ I + IA  +  +F++ ++ 
Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567


>gi|116630136|ref|YP_815308.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
 gi|122272927|sp|Q041K2|DNLJ_LACGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116095718|gb|ABJ60870.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
          Length = 668

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+ +G    RL+L+ +  ++ +S+ +   L SI+ I + IA  +  +F++ ++ 
Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567


>gi|289550639|ref|YP_003471543.1| Late competence protein ComEA, DNA receptor [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180171|gb|ADC87416.1| Late competence protein ComEA, DNA receptor [Staphylococcus
           lugdunensis HKU09-01]
          Length = 187

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 12/57 (21%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISR-----SSPETLASIEGISKKIACKIYNHF 607
            L ++ GIGP + + +L                +S + L  I+GI +K   K+  +F
Sbjct: 136 SLTKVPGIGPSKAKEILNY-------KEQHGQFTSVDELKKIKGIGEKTFEKLKQYF 185


>gi|194017399|ref|ZP_03056011.1| DNA repair protein RadC [Bacillus pumilus ATCC 7061]
 gi|194011267|gb|EDW20837.1| DNA repair protein RadC [Bacillus pumilus ATCC 7061]
          Length = 232

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LLQ+FG ++ +  +S E ++ I G+ K  A  +    
Sbjct: 57  RLLQTFGGLRSVKEASIEEMSKIRGVGKAKAISLLAAL 94


>gi|167647755|ref|YP_001685418.1| DNA repair protein RadC [Caulobacter sp. K31]
 gi|167350185|gb|ABZ72920.1| DNA repair protein RadC [Caulobacter sp. K31]
          Length = 196

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           + LL  FG+      +S E L +++G+ +  A  I    H+  
Sbjct: 54  KALLARFGSFGATISASIEDLKTVQGVGETAAIDIKL-LHEAA 95


>gi|282889962|ref|ZP_06298497.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500155|gb|EFB42439.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 668

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 548 RRKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + K  ++S       I  +G     LL +  G V ++ + + E L  IEGI +K+A  I 
Sbjct: 502 KSKDVSFSRFIMALGIKHVGEGTAELLAKRAGNVHILMQMTTEELLQIEGIGEKVATAIV 561

Query: 605 NHF 607
            +F
Sbjct: 562 EYF 564


>gi|251777792|ref|ZP_04820712.1| helicase, RecD/TraA family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082107|gb|EES47997.1| helicase, RecD/TraA family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 739

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 16/65 (24%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN------------ 605
           I+GIGP+  + ++  FG  T+  I  +  E L  IEGI KK    IY             
Sbjct: 88  IHGIGPVTAKKIIDKFGEKTLD-ILENHIEELMEIEGIGKKKFMIIYESYMEQNGLKEVI 146

Query: 606 -HFHK 609
            HFHK
Sbjct: 147 LHFHK 151


>gi|329114881|ref|ZP_08243637.1| Hypothetical protein APO_1680 [Acetobacter pomorum DM001]
 gi|326695778|gb|EGE47463.1| Hypothetical protein APO_1680 [Acetobacter pomorum DM001]
          Length = 158

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 21/101 (20%)

Query: 6   MPECPGVYQMLDIAG-RVLYVGKAYN-LQKRIKSYMHSNNHT--HRITHMISQINN---- 57
           +P  PGVY      G  VLYVG A   L +RI+ Y +S N     RI   + +  +    
Sbjct: 43  VPNKPGVYAY--AVGQEVLYVGSARCGLHRRIRHYENSKNLRTASRIREEVLRTLSRGLG 100

Query: 58  IRFTVTCTEVEALL-----------LEANMIKRLKPRFNIL 87
           +   V   E   +L           LE  +I+ +KP++N  
Sbjct: 101 VDVYVIIPEKGFMLNGVLPVDPVAGLEEGLIRAIKPKWNRR 141


>gi|197104531|ref|YP_002129908.1| DNA repair protein [Phenylobacterium zucineum HLK1]
 gi|196477951|gb|ACG77479.1| DNA repair protein [Phenylobacterium zucineum HLK1]
          Length = 243

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           + LL  FG++  +  ++   L ++ G+ + +A  +    H+ T
Sbjct: 67  KQLLARFGSLGAVLGATAAELRTVPGVGESVALDLKL-LHEAT 108


>gi|238792031|ref|ZP_04635667.1| DNA ligase [Yersinia intermedia ATCC 29909]
 gi|238728662|gb|EEQ20180.1| DNA ligase [Yersinia intermedia ATCC 29909]
          Length = 670

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 18/48 (37%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F  +  +  +  + L S+  + + +A  + N   + 
Sbjct: 520 VGEATAANLAAHFCNLDNLRAADIDALKSVPDVGEVVARHVRNFLSEE 567


>gi|257387145|ref|YP_003176918.1| NAD-dependent DNA ligase LigA [Halomicrobium mukohataei DSM 12286]
 gi|257169452|gb|ACV47211.1| DNA ligase, NAD-dependent [Halomicrobium mukohataei DSM 12286]
          Length = 700

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSP----ETLASIEGISKKIACKIYNHFHKNTSHT 614
            I+ +G +  R L + FG+ + I  +      +   +++ +   +A  I   F    +  
Sbjct: 540 GIHDVGTVTARNLAREFGSFEAIREAGAAGDTDAFEAVDDVGPVVAESICEFFRGERNEA 599


>gi|169825771|ref|YP_001695929.1| hypothetical protein Bsph_0165 [Lysinibacillus sphaericus C3-41]
 gi|168990259|gb|ACA37799.1| Hypothetical yqxK protein [Lysinibacillus sphaericus C3-41]
          Length = 388

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603
           PLD I GIGP     LL +FGT   I  + + E L  I  +  KIA  I
Sbjct: 318 PLDFIPGIGPKMMERLLHAFGTEMNILHQVTMEQLEQI--VPHKIAKLI 364


>gi|187251767|ref|YP_001876249.1| DNA repair protein RadC [Elusimicrobium minutum Pei191]
 gi|186971927|gb|ACC98912.1| DNA repair protein RadC [Elusimicrobium minutum Pei191]
          Length = 228

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 26/79 (32%)

Query: 543 TTHRKR-RKKAAYSPLD--------------EINGIGPLRKR------LLLQSFGTVKMI 581
           T HR+R + K A + LD               I      RK        L++ FG++  +
Sbjct: 10  TGHRERIKNKFAKNGLDGFMEHETLELLLTYSIP-----RKDTKPIAWELIKKFGSLSGV 64

Query: 582 SRSSPETLASIEGISKKIA 600
             +SP+ L  ++G+ K+ A
Sbjct: 65  LDASPQELMEVKGVGKETA 83


>gi|268319976|ref|YP_003293632.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
 gi|262398351|emb|CAX67365.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
          Length = 668

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+ +G    RL+L+ +  ++ +S+ +   L SI+ I + IA  +  +F++ ++ 
Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567


>gi|238854176|ref|ZP_04644523.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
 gi|238833252|gb|EEQ25542.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
          Length = 668

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+ +G    RL+L+ +  ++ +S+ +   L SI+ I + IA  +  +F++ ++ 
Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELTSIDTIGETIAESLTAYFNQPSAQ 567


>gi|227874422|ref|ZP_03992603.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268]
 gi|227839738|gb|EEJ50187.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268]
          Length = 692

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVK--MISRSSPETLASIEGISKKIACK 602
           KA  S L        I GIG    R+L ++F +     +  ++ E +  ++GI + +A  
Sbjct: 524 KAKTSNLGRLLYGLGIEGIGVSNGRMLAEAF-SQDPYKLMDATKEEILQVKGIGQVLADS 582

Query: 603 IYNHFHKNTS 612
           I  +F K  +
Sbjct: 583 IAEYFQKEEN 592


>gi|160932696|ref|ZP_02080085.1| hypothetical protein CLOLEP_01537 [Clostridium leptum DSM 753]
 gi|156867770|gb|EDO61142.1| hypothetical protein CLOLEP_01537 [Clostridium leptum DSM 753]
          Length = 738

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + GIGP+    L+ +FG  T++++    PE LAS++GISK  A +I +  H 
Sbjct: 93  VKGIGPVMAARLVDAFGDQTLEVLEN-HPERLASVKGISKAKAQQIASELHN 143


>gi|56477511|ref|YP_159100.1| ComE operon protein 1-related protein [Aromatoleum aromaticum EbN1]
 gi|56313554|emb|CAI08199.1| ComE operon protein 1-related protein [Aromatoleum aromaticum EbN1]
          Length = 155

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 15/52 (28%)

Query: 557 LDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGIS-KKIAC 601
           L+ + GIGP + + +++       F        +S + L  + GI  K +A 
Sbjct: 94  LETVKGIGPAKAKAIIEYRKANGAF--------ASVDDLTKVPGIGDKSVAQ 137


>gi|257791950|ref|YP_003182556.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
 gi|325829905|ref|ZP_08163363.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
 gi|257475847|gb|ACV56167.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
 gi|325488072|gb|EGC90509.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
          Length = 708

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 19/100 (19%)

Query: 513 KKGEALVLNMRDPILYFIQRLRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKR 569
           K GE + L         +  + DE+ R   FA         +A +     I  +G     
Sbjct: 511 KDGEPIRLGST-VAKKLVAAI-DES-RTRPFA---------RALFG--LGIRHVG-KTIA 555

Query: 570 LLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            LL + + +++ +  +S E LA I+G+  KIA   Y    
Sbjct: 556 ELLAAAYPSIEALMEASEEDLAVIDGVGPKIARSAYLFLR 595


>gi|149183793|ref|ZP_01862194.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
 gi|148848496|gb|EDL62745.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
          Length = 668

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L Q F  +  +  +S + L +I  I  K+A  +  +F K  
Sbjct: 511 GIRHVGAKAAKTLAQEFENIDNLKVASKDQLTAINEIGDKMADAVVAYFEKEE 563


>gi|301156154|emb|CBW15625.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 234

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           KA    L +++GIG  + + ++     V  I  +S   L++I+GI +    KI  + 
Sbjct: 178 KADAETLQKLSGIGEKKAQAIIDYRNKVGKIKSAS--ELSNIDGIGEATIEKISPYL 232


>gi|257452731|ref|ZP_05618030.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
 gi|317059272|ref|ZP_07923757.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
 gi|313684948|gb|EFS21783.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
          Length = 676

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G +  +LL +    +  +   + E L  IEG+ +K+A  I + F   T   
Sbjct: 516 GIPFVGKVAAKLLAKESKNILKLQTMTEEELQQIEGVGEKMARSIVDFFQNETKKQ 571


>gi|167629436|ref|YP_001679935.1| DNA-binding protein, putative [Heliobacterium modesticaldum Ice1]
 gi|167592176|gb|ABZ83924.1| DNA-binding protein, putative [Heliobacterium modesticaldum Ice1]
          Length = 353

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
             L+ +FG ++ + R+S E L  +EGI +  A  I     +
Sbjct: 303 ENLVGAFGGLQNVCRASTEELDEVEGIGEVRARAIKEGLRR 343


>gi|125624319|ref|YP_001032802.1| DNA repair protein radC-like protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|229485554|sp|A2RLC4|Y1515_LACLM RecName: Full=UPF0758 protein llmg_1515
 gi|124493127|emb|CAL98091.1| DNA repair protein radC homolog [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 227

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600
           LLQ FGT+    ++S   L  I GI +  A
Sbjct: 51  LLQHFGTLDNFRKASISELKEISGIGQTKA 80


>gi|15643810|ref|NP_228858.1| comEA protein-related protein [Thermotoga maritima MSB8]
 gi|4981594|gb|AAD36129.1|AE001765_8 comEA protein-related protein [Thermotoga maritima MSB8]
          Length = 181

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  I GIGP++ + ++    +    S  S E L ++ GI +K   KI  +
Sbjct: 57  LMSIPGIGPVKAQRIIDYRESHGGFS--SVEELKNVSGIGEKTLEKISRY 104



 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++ +S E L SI GI    A +I ++
Sbjct: 48  ELNTASLEDLMSIPGIGPVKAQRIIDY 74


>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
 gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
          Length = 930

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 10/55 (18%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            + G+G    R L+Q+FG+++ I       L +++ I      +I N   ++ S 
Sbjct: 197 GVPGVGEKTARSLIQTFGSLQNI-------LENVDSIKP---ERIRNAIKEHQSQ 241


>gi|320540519|ref|ZP_08040169.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
 gi|320029450|gb|EFW11479.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
          Length = 685

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 18/47 (38%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FG+++ +  +    L  +  + + +A    +   +
Sbjct: 520 VGEATAANLAAHFGSLEKLYAADIAALKEVPDVGEVVAQHTRHFLDE 566


>gi|315658134|ref|ZP_07911006.1| competence protein comEA [Staphylococcus lugdunensis M23590]
 gi|315496463|gb|EFU84786.1| competence protein comEA [Staphylococcus lugdunensis M23590]
          Length = 226

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 12/57 (21%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISR-----SSPETLASIEGISKKIACKIYNHF 607
            L ++ GIGP + + +L                +S + L  I+GI +K   K+  +F
Sbjct: 175 SLTKVPGIGPSKAKEILNY-------KEQHGQFTSVDELKKIKGIGEKTFEKLKQYF 224


>gi|290967938|ref|ZP_06559488.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
 gi|290782077|gb|EFD94655.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
          Length = 668

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 27/45 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    R+L ++FG+++ ++ +   TL ++E I  +IA  +  +F
Sbjct: 519 VGAKAGRILAETFGSMQALAAADIATLMAVETIGPRIAESVAAYF 563


>gi|188588110|ref|YP_001919909.1| helicase, RecD/TraA family [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498391|gb|ACD51527.1| helicase, RecD/TraA family [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 739

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 16/65 (24%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN------------ 605
           I+GIGP+  + ++  FG  T+  I  +  E L  IEGI KK    IY             
Sbjct: 88  IHGIGPVTAKKIIDKFGEKTLD-ILENHIEELMEIEGIGKKKFMIIYESYMEQNGLKEVI 146

Query: 606 -HFHK 609
            HFHK
Sbjct: 147 LHFHK 151


>gi|187933398|ref|YP_001884722.1| helicase, RecD/TraA family [Clostridium botulinum B str. Eklund
           17B]
 gi|187721551|gb|ACD22772.1| helicase, RecD/TraA family [Clostridium botulinum B str. Eklund
           17B]
          Length = 739

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 16/65 (24%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN------------ 605
           I+GIGP+  + ++  FG  T+  I  +  E L  IEGI KK    IY             
Sbjct: 88  IHGIGPVTAKKIIDKFGEKTLD-ILENHIEELMEIEGIGKKKFMIIYESYMEQNGLKEVI 146

Query: 606 -HFHK 609
            HFHK
Sbjct: 147 LHFHK 151


>gi|170759254|ref|YP_001785497.1| RecD/TraA family helicase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406243|gb|ACA54654.1| helicase, RecD/TraA family [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 744

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN-HFHKNT 611
           I+GIGP+  + +++ FG  T+  I  ++ E L  IEGI KK    IY+ +  +N 
Sbjct: 88  ISGIGPVTAKKIVKKFGEETL-NILDNNIERLTDIEGIGKKKIEIIYDSYIKQNE 141


>gi|116873191|ref|YP_849972.1| NAD-dependent DNA ligase LigA [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466434|sp|A0AJL1|DNLJ_LISW6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|116742069|emb|CAK21193.1| DNA ligase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 670

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKMADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|110669303|ref|YP_659114.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi
           DSM 16790]
 gi|121692072|sp|Q18EU1|RADA_HALWD RecName: Full=DNA repair and recombination protein radA
 gi|109627050|emb|CAJ53526.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi
           DSM 16790]
          Length = 343

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L+++ G+GP     L+ + F + + I+ +SP  +++   + +  A  I N 
Sbjct: 5   ELEDLPGVGPATSDKLVDAGFESYQAIAVASPAEMSNTADVGESTASDIINA 56


>gi|225018630|ref|ZP_03707822.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
           DSM 5476]
 gi|224948624|gb|EEG29833.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
           DSM 5476]
          Length = 659

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G    +LL + +G +  +  +  E +  I G+   IA  I  +F
Sbjct: 509 GIRGVGQSVAKLLCEKYGNIDELMTAPAEEIDEIYGVGGVIAHNIVQYF 557


>gi|170289532|ref|YP_001739770.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermotoga sp. RQ2]
 gi|170177035|gb|ACB10087.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga sp. RQ2]
          Length = 181

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  I GIGP++ + ++    +    S  S E L ++ GI +K   KI  +
Sbjct: 57  LMSIPGIGPVKAQRIIDYRESHGGFS--SVEELKNVSGIGEKTLEKISRY 104



 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++ +S E L SI GI    A +I ++
Sbjct: 48  ELNTASLEDLMSIPGIGPVKAQRIIDY 74


>gi|301100660|ref|XP_002899419.1| DNA excision repair protein ERCC-1 [Phytophthora infestans T30-4]
 gi|262103727|gb|EEY61779.1| DNA excision repair protein ERCC-1 [Phytophthora infestans T30-4]
          Length = 308

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL +FGTVK +  +S E L+   G+  K   ++   F +
Sbjct: 263 LLSTFGTVKGLMNASMEELSLCPGVGAKKVRQLLETFQE 301


>gi|189241644|ref|XP_970360.2| PREDICTED: similar to excision repair cross-complementing 1 ercc1
           [Tribolium castaneum]
          Length = 245

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  I       L+  F T++ + +++   L+   G+    A K+Y+  H+
Sbjct: 187 VLTSIKPINKTDAMNLIARFKTLEGVIKATEFQLSECPGLGPVKARKLYSTLHE 240


>gi|195953269|ref|YP_002121559.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
 gi|254781349|sp|B4U8X0|DNLJ_HYDS0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|195932881|gb|ACG57581.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
          Length = 700

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 25/86 (29%)

Query: 539 RFAITTHRKRRKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMI 581
           RFA        KK+A + +D I               GI   G    + L   +  +  I
Sbjct: 517 RFA--------KKSAQNLIDAIEASKRRGLARVLYGLGIRYVGLTTAKKLASYYKDIWNI 568

Query: 582 SRSSPETLASIEGISKKIACKIYNHF 607
            ++S E L +IE I   +A  I   F
Sbjct: 569 VKASEEDLRNIEDIGDIVARSIKEFF 594


>gi|67920947|ref|ZP_00514466.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
 gi|67857064|gb|EAM52304.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
          Length = 670

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 17/75 (22%)

Query: 550 KKAAYSPLDEING-----------------IGPLRKRLLLQSFGTVKMISRSSPETLASI 592
            K+A + ++ I G                 +G +   LL ++F +++ +S++S   L+S+
Sbjct: 487 SKSANNLIEAIEGSKKQPFSRVLYGLGIRYVGSVTAGLLAENFPSMEQLSQASFSDLSSV 546

Query: 593 EGISKKIACKIYNHF 607
            G+ ++IA  I + F
Sbjct: 547 YGVGEEIAQSIIDWF 561


>gi|281413115|ref|YP_003347194.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga naphthophila RKU-10]
 gi|281374218|gb|ADA67780.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga naphthophila RKU-10]
          Length = 181

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  I GIGP++ + ++    +    S  S E L ++ GI +K   KI  +
Sbjct: 57  LMSIPGIGPVKAQRIIDYRESHGGFS--SVEELKNVSGIGEKTLEKISRY 104



 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++ +S E L SI GI    A +I ++
Sbjct: 48  ELNTASLEDLMSIPGIGPVKAQRIIDY 74


>gi|222100489|ref|YP_002535057.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359]
 gi|221572879|gb|ACM23691.1| ComEA protein-related protein [Thermotoga neapolitana DSM 4359]
          Length = 181

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 17/75 (22%)

Query: 548 RRKKAAYS---PLDEINGIGPLRKRLLLQSFGTVKMISR-------------SSPETLAS 591
           RR +  +S    L  ++GIG       +  + TV+ + +             +S E L +
Sbjct: 75  RRIRGKFSTVEELTNVSGIGEKTLEK-ISKYVTVEGVEQPFRSEVTKLNVNTASLEELET 133

Query: 592 IEGISKKIACKIYNH 606
           +  I +  A  I  +
Sbjct: 134 LPYIGEAKARAIIEY 148



 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISR--SSPETLASIEGISKKIACKIYNH 606
           L  I GIGP++ + +++     + I    S+ E L ++ GI +K   KI  +
Sbjct: 57  LMSIPGIGPVKAQRIVEY----RRIRGKFSTVEELTNVSGIGEKTLEKISKY 104



 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 583 RSSPETLASIEGISKKIACKIYNH 606
            +S E L SI GI    A +I  +
Sbjct: 51  SASVEDLMSIPGIGPVKAQRIVEY 74


>gi|152979719|ref|YP_001345348.1| NAD-dependent DNA ligase LigA [Actinobacillus succinogenes 130Z]
 gi|190359224|sp|A6VR16|DNLJ_ACTSZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150841442|gb|ABR75413.1| DNA ligase, NAD-dependent [Actinobacillus succinogenes 130Z]
          Length = 672

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA  + L        I  +G      L   F  +  +  +  E L ++  + + +A +IY
Sbjct: 503 KAKKTTLARFIFALGIREVGEATALNLANFFKNLTALQTADLEQLQAVSDVGEVVANRIY 562

Query: 605 NHFHK 609
             + +
Sbjct: 563 VFWRE 567


>gi|326795234|ref|YP_004313054.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas
           mediterranea MMB-1]
 gi|326545998|gb|ADZ91218.1| Holliday junction ATP-dependent DNA helicase ruvA [Marinomonas
           mediterranea MMB-1]
          Length = 199

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKI 599
             H  + ++A +  L ++NGIGP     +L S  T   ++ +  S+ + L  I G+ KK 
Sbjct: 62  GFH-SKDERAVFRVLIKVNGIGPKMALAILSSMSTSELIENVQESNVDALVKIPGVGKKT 120

Query: 600 ACKI 603
           A ++
Sbjct: 121 AERL 124


>gi|87308785|ref|ZP_01090924.1| DNA ligase [Blastopirellula marina DSM 3645]
 gi|87288496|gb|EAQ80391.1| DNA ligase [Blastopirellula marina DSM 3645]
          Length = 679

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LL + F TV  +  +S E +A++  I   IA  +++ F
Sbjct: 514 SIRHVGNRVAQLLARHFVTVDALLSASEEEIAAVNEIGPIIAASVHHFF 562


>gi|282899989|ref|ZP_06307949.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
 gi|281195087|gb|EFA70024.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
          Length = 690

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G +  +LL + F TV  ++ +    +  + GI  +IA  +Y  FH + + 
Sbjct: 528 GIRHVGSVNAQLLSEKFTTVDKLASAKQSDIEGVYGIGVEIAQSVYQWFHISANQ 582



 Score = 40.5 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +I GIG      L    L    +V  +   + E L  +E + K+ A K+     ++ +  
Sbjct: 462 DIKGIGEKLVHQLVDKGLVH--SVADLYNLTEEQLCGLERMGKRSAEKLVQVIRESKNQP 519


>gi|319426762|gb|ADV54836.1| DNA ligase, NAD-dependent [Shewanella putrefaciens 200]
          Length = 685

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F ++  +  ++ E L ++E +   +A  + + F
Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTAVEDVGVVVAQHVAHFF 578


>gi|120598462|ref|YP_963036.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
 gi|166216244|sp|A1RII7|DNLJ_SHESW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120558555|gb|ABM24482.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
          Length = 685

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F ++  +  ++ E L ++E +   +A  + + F
Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTAVEDVGVVVAQHVAHFF 578


>gi|146293460|ref|YP_001183884.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
 gi|166216243|sp|A4Y802|DNLJ_SHEPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145565150|gb|ABP76085.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
          Length = 685

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F ++  +  ++ E L ++E +   +A  + + F
Sbjct: 534 VGEATAANLAAHFASLDALRVATVEQLTAVEDVGVVVAQHVAHFF 578


>gi|327535733|gb|AEA94567.1| competence protein comEA [Enterococcus faecalis OG1RF]
          Length = 114

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 57  ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVERLKD 108

Query: 606 HF 607
             
Sbjct: 109 ML 110


>gi|319647199|ref|ZP_08001421.1| hypothetical protein HMPREF1012_02460 [Bacillus sp. BT1B_CT2]
 gi|317390546|gb|EFV71351.1| hypothetical protein HMPREF1012_02460 [Bacillus sp. BT1B_CT2]
          Length = 128

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LLQ+F  ++++  +S E L+SI GI +  A +I    
Sbjct: 49  RLLQTFDGLRLLKEASAEELSSISGIGRAKAVQILAAL 86


>gi|289434764|ref|YP_003464636.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171008|emb|CBH27550.1| DNA-binding protein, ComEA family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 202

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A+ S L  + GIG  +   +++     + + + + E L  + GI +K   K+  + 
Sbjct: 146 ASTSDLQTVPGIGESKATAIIEY-REKEGLFQ-TIEDLQKVTGIGEKTIEKLKEYL 199


>gi|288555664|ref|YP_003427599.1| DNA binding and uptake late competence protein [Bacillus
           pseudofirmus OF4]
 gi|288546824|gb|ADC50707.1| late competence operon required for DNA binding and uptake
           [Bacillus pseudofirmus OF4]
          Length = 206

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPETLASIEGISKKIACKIYN 605
           KA+ + L+ + GIGP +   +L    + +    +  S E L ++ GI  K   K+  
Sbjct: 149 KASQAELETLPGIGPAKAEAIL----SYREEQGAFQSVEELMNVSGIGPKSFEKLQE 201


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 15/62 (24%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA----------SIEGI-SKKIACKI 603
           D I G   +G    + LL+ FG+++ +  ++ + L             +GI SK +A  I
Sbjct: 190 DNIPGLPGVGEKTAQKLLKEFGSMENLL-ANTDKLKGKLRENIQANKDKGILSKTLARII 248

Query: 604 YN 605
            +
Sbjct: 249 LD 250


>gi|317493200|ref|ZP_07951623.1| 5'-3' exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918860|gb|EFV40196.1| 5'-3' exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 250

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           S +  I GIGP     LL  FG++  I     E + ++ 
Sbjct: 177 SKISGIPGIGPKAAATLLNEFGSLSAI----FEQIENVP 211


>gi|327402054|ref|YP_004342892.1| DNA ligase [Fluviicola taffensis DSM 16823]
 gi|327317562|gb|AEA42054.1| DNA ligase [Fluviicola taffensis DSM 16823]
          Length = 670

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L  +F  +  IS+++ + L +++ I +KIA  +   F    +
Sbjct: 521 VGETVAKKLAYAFNNIDAISKATYDELIAVDEIGEKIAIAVQKFFQDERA 570


>gi|289208742|ref|YP_003460808.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
 gi|288944373|gb|ADC72072.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
          Length = 697

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G +  R L   +G +  + ++  E L  +  +   +A  I N F +
Sbjct: 545 VGEVTARNLATYYGDLDTLMQADAEALQEVPDVGPIVAEHIANFFAE 591


>gi|307151740|ref|YP_003887124.1| excinuclease ABC subunit C domain-containing protein [Cyanothece
          sp. PCC 7822]
 gi|306981968|gb|ADN13849.1| Excinuclease ABC C subunit domain protein [Cyanothece sp. PCC
          7822]
          Length = 527

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 14/91 (15%)

Query: 1  MSSEQM-PECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQ---IN 56
          + ++++ P   G+Y ++D  G V YVG+A N+ KR      +    HR+  + +Q     
Sbjct: 15 LKNKELLPAYSGIYYVVDETGLVWYVGQAKNINKR-----WAGKTHHRLHQLAAQKKKSF 69

Query: 57 NIRFTVTCTEV--EALLLEANMIKRLKPRFN 85
           I + +  T    EA   E   I++  P  N
Sbjct: 70 RIYYELVATGFLDEA---EKQRIEKYNPHLN 97


>gi|52549421|gb|AAU83270.1| recombinase [uncultured archaeon GZfos27B6]
          Length = 315

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 557 LDEINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L+E+ G+GP     L    L    +++ I+ +SP  L +   I +  A KI N 
Sbjct: 3   LEELPGVGPAIAEKLREAGLN---SLEAIAVASPAELVATAEIGESTAAKIINA 53


>gi|257387245|ref|YP_003177018.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei
           DSM 12286]
 gi|257169552|gb|ACV47311.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei
           DSM 12286]
          Length = 349

 Score = 45.9 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 552 AAYSP-LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            + S  L+E+ G+GP     L  + F   + I+ +SP  L++   I +  A  I     +
Sbjct: 1   MSTSEDLEELPGVGPATAEKLKDNGFDGYQGIAVASPGELSNTADIGESSAADIIQAARE 60

Query: 610 NTS 612
              
Sbjct: 61  AAD 63


>gi|312865899|ref|ZP_07726120.1| ComE operon protein 1 [Streptococcus downei F0415]
 gi|311098303|gb|EFQ56526.1| ComE operon protein 1 [Streptococcus downei F0415]
          Length = 125

 Score = 45.9 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKI 603
           A+   L  I+GIG  R + ++      G  K     S E L +I GI +K   KI
Sbjct: 70  ASKEELQTISGIGEKRAQDIIDYRQEHGGFK-----SVEELKNISGIGEKTYEKI 119


>gi|312882689|ref|ZP_07742426.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369650|gb|EFP97165.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 670

 Score = 45.9 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L + F T+  I+ +  + L  ++ I   +A  I   F +  + T
Sbjct: 521 VGEATATNLAKHFKTLANITAAPHDALIEVQDIGDIVAKHITAFFSQQQNQT 572


>gi|295111985|emb|CBL28735.1| GIY-YIG catalytic domain. [Synergistetes bacterium SGP1]
          Length = 109

 Score = 45.9 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  PECPGVYQMLDIA-GRVLYVGKAYNLQKRIKSYMHSNNHTHRITH 50
          P  PGVY++ D A G ++Y+G+  +++ R++ +  S         
Sbjct: 25 PNAPGVYRIRDKATGEIVYIGQTGDVRTRLQQHERSGRFDPETQK 69


>gi|260892303|ref|YP_003238400.1| DNA integrity scanning, DisA, linker region [Ammonifex degensii
           KC4]
 gi|260864444|gb|ACX51550.1| DNA integrity scanning, DisA, linker region [Ammonifex degensii
           KC4]
          Length = 352

 Score = 45.9 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              ++++FG +  I ++S E L  +EGI +  A  I     +
Sbjct: 300 IENIVRTFGNLSRILQASIEELDDVEGIGEARARMIKEGLKR 341


>gi|145589636|ref|YP_001156233.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|190359270|sp|A4SYV5|DNLJ_POLSQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145048042|gb|ABP34669.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 671

 Score = 45.9 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 22/51 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L   + ++  +  +S E L +++ +   +A  I +   +
Sbjct: 521 GIRHVGETTAKDLANHYQSMHALMDASVEELLTVKDVGPVVADSITSFMQE 571


>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
 gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
 gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
          Length = 876

 Score = 45.9 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 10/54 (18%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            + GIG      LL+ FGTV+ +  +S +    ++G       K+  +  ++  
Sbjct: 192 GVPGIGEKTAVKLLKQFGTVENVL-ASIDE---VKG------EKLKENLRQHRD 235


>gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
 gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
          Length = 867

 Score = 45.9 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           D I G   IGP     LLQ +G++  I     E L  ++   +  A K+    
Sbjct: 213 DNIPGAKGIGPKTAAKLLQDYGSLDAI----LENLERVK--PESAAKKVRASL 259


>gi|212224494|ref|YP_002307730.1| ski2-like helicase [Thermococcus onnurineus NA1]
 gi|212009451|gb|ACJ16833.1| DNA helicase [Thermococcus onnurineus NA1]
          Length = 726

 Score = 45.9 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 561 NGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             IG  R R L  + F T + I R+    L ++EGI  K+   ++ HF
Sbjct: 651 PNIGRKRARALYNAGFRTTEDIMRAKVSELLAVEGIGLKVVEGLFMHF 698


>gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
 gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
          Length = 878

 Score = 45.9 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 10/54 (18%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            + GIG      LL+ FGTV+ +  +S +    ++G       K+  +  ++  
Sbjct: 194 GVPGIGEKTAVKLLKQFGTVENVL-ASIDE---VKG------EKLKENLRQHRD 237


>gi|319899376|ref|YP_004159473.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella
           clarridgeiae 73]
 gi|319403344|emb|CBI76903.1| Holliday junction ATP-dependent DNA helicase ruvA [Bartonella
           clarridgeiae 73]
          Length = 213

 Score = 45.9 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 509 KFFVKKGEALVLNMRDPILYFI--QRLRDEAHR-FAITTHRKRRKKAAYSPLDEINGIGP 565
             F+       L      L       +R+EA R F  TT   + +K  +  L  + G+G 
Sbjct: 27  IIFIPNRLHSSLPAIGESLSLFIETHVREEAIRLFGFTT---KSEKEWFCLLQNVPGVGA 83

Query: 566 LRKRLLLQSFGTVKMISRS-SPETLASI---EGISKKIACKIYNHFHKNT 611
                LL +  ++  +S++ +   +A I    G+ KK++ +I +      
Sbjct: 84  KVALALLGTL-SINDLSQAITLNDIAMISRAPGVGKKVSERIVSELKNKA 132


>gi|251788438|ref|YP_003003159.1| NAD-dependent DNA ligase LigA [Dickeya zeae Ech1591]
 gi|247537059|gb|ACT05680.1| DNA ligase, NAD-dependent [Dickeya zeae Ech1591]
          Length = 682

 Score = 45.9 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 20/47 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   FGT++ +  +  + L  ++ +   +A  + N   +
Sbjct: 530 VGEATAANLAAHFGTLEALQAADLDALQQVQDVGIVVATHVRNFLDE 576


>gi|196016209|ref|XP_002117958.1| hypothetical protein TRIADDRAFT_61989 [Trichoplax adhaerens]
 gi|190579431|gb|EDV19526.1| hypothetical protein TRIADDRAFT_61989 [Trichoplax adhaerens]
          Length = 265

 Score = 45.9 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I  +S + LA   GI  + A +I+  F +
Sbjct: 212 FGSMDNIISASVQDLALCPGIGLQKAKRIHALFRE 246


>gi|169834268|ref|YP_001694538.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|254781426|sp|B1IBQ3|DNLJ_STRPI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|168996770|gb|ACA37382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Hungary19A-6]
          Length = 652

 Score = 45.9 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ +S++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFAAEGSE 556


>gi|153826197|ref|ZP_01978864.1| DNA ligase [Vibrio cholerae MZO-2]
 gi|149740057|gb|EDM54226.1| DNA ligase [Vibrio cholerae MZO-2]
          Length = 669

 Score = 45.9 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I ++S E    +  +   +A  +   F ++ +  
Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLLAFFAQDRNQQ 571


>gi|332654161|ref|ZP_08419905.1| DNA repair protein RadC [Ruminococcaceae bacterium D16]
 gi|332517247|gb|EGJ46852.1| DNA repair protein RadC [Ruminococcaceae bacterium D16]
          Length = 229

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600
           L++ FG++  +  +S E L  ++G+ +  A
Sbjct: 49  LIEQFGSLSGVLDASVEELRKVKGVGEHTA 78


>gi|270000835|gb|EEZ97282.1| hypothetical protein TcasGA2_TC011086 [Tribolium castaneum]
          Length = 213

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  I       L+  F T++ + +++   L+   G+    A K+Y+  H+
Sbjct: 155 VLTSIKPINKTDAMNLIARFKTLEGVIKATEFQLSECPGLGPVKARKLYSTLHE 208


>gi|217964370|ref|YP_002350048.1| ComE operon protein 1 [Listeria monocytogenes HCC23]
 gi|217333640|gb|ACK39434.1| ComE operon protein 1 [Listeria monocytogenes HCC23]
 gi|307571065|emb|CAR84244.1| DNA-binding protein, ComEA family [Listeria monocytogenes L99]
          Length = 200

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 144 ATKDDLQQVPGIGESKATAIIEH-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 197


>gi|73668577|ref|YP_304592.1| hypothetical protein Mbar_A1044 [Methanosarcina barkeri str.
           Fusaro]
 gi|72395739|gb|AAZ70012.1| DNA mismatch repair protein, MutS family [Methanosarcina barkeri
           str. Fusaro]
          Length = 719

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKIYNH 606
            S L EI+GIG      L++ FGT    ++ I      +L+ I GIS   A  +  +
Sbjct: 13  LSSLREIHGIGERVADRLIEHFGTEEAALQAICEGDIASLSEINGISHNFALSLARY 69


>gi|307594663|ref|YP_003900980.1| DEAD/DEAH box helicase domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307549864|gb|ADN49929.1| DEAD/DEAH box helicase domain protein [Vulcanisaeta distributa DSM
           14429]
          Length = 763

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            + G+G  R R L  + F +V+ I+ + P  ++ I G   K+A  I  
Sbjct: 676 NLEGVGRARARALYNAGFKSVEDIANADPRVISMIRGFGDKLARSIIE 723


>gi|307704876|ref|ZP_07641768.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
 gi|307621589|gb|EFO00634.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
          Length = 652

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ ++++ PE +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQHFHSIETLAQADPEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|255521025|ref|ZP_05388262.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-175]
          Length = 550

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 387 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 439


>gi|299137525|ref|ZP_07030706.1| hypothetical protein AciX8DRAFT_2011 [Acidobacterium sp. MP5ACTX8]
 gi|298600166|gb|EFI56323.1| hypothetical protein AciX8DRAFT_2011 [Acidobacterium sp. MP5ACTX8]
          Length = 167

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 9/52 (17%)

Query: 2   SSEQMPECPGVYQMLDI--------AGRVLYVGKA-YNLQKRIKSYMHSNNH 44
           +++ +P+ PGVY  L           G ++YVGKA  +++ R   Y+     
Sbjct: 53  NAKNIPQSPGVYAFLIKPMIPFGLEHGILIYVGKADTSIRDRYAHYLQQAAD 104


>gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183]
 gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183]
          Length = 870

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 7/45 (15%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           D I G+   GP +   LL+ FG+V+ +     E L +++G+S+ +
Sbjct: 185 DNIPGLPGCGPKKAAALLKQFGSVEGL----LENLDAVKGLSQTM 225


>gi|153813748|ref|ZP_01966416.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174]
 gi|149830168|gb|EDM85261.1| hypothetical protein RUMOBE_04182 [Ruminococcus obeum ATCC 29174]
          Length = 538

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFH 608
            K  YS    I  IG    +++ + F   +  I  +  E +++I+GI   IA  +  +F 
Sbjct: 446 AKVIYS--LGIANIGLSNAKVICRHFDDDLDKIRSADEEEISAIDGIGPVIAKSLTKYFS 503

Query: 609 KNTSHT 614
              ++ 
Sbjct: 504 NPENNQ 509


>gi|256003493|ref|ZP_05428483.1| protein of unknown function DUF147 [Clostridium thermocellum DSM
           2360]
 gi|281418343|ref|ZP_06249363.1| DNA integrity scanning, DisA [Clostridium thermocellum JW20]
 gi|255992517|gb|EEU02609.1| protein of unknown function DUF147 [Clostridium thermocellum DSM
           2360]
 gi|281409745|gb|EFB40003.1| DNA integrity scanning, DisA [Clostridium thermocellum JW20]
 gi|316941438|gb|ADU75472.1| DNA integrity scanning, DisA, linker region [Clostridium
           thermocellum DSM 1313]
          Length = 360

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            R L++ F  ++ I  +S E L  + GI +  A  I++   +
Sbjct: 307 IRNLVEKFSNLQGILNASIEELDDVAGIGEVRARIIWDGLRR 348


>gi|224025865|ref|ZP_03644231.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM
           18228]
 gi|224019101|gb|EEF77099.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM
           18228]
          Length = 665

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 28/52 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G    + + ++F ++  +++++ + L  ++ I +KIA  I  +F    + +
Sbjct: 515 VGETVAKKVAKAFTSIDALAQATLDDLIHVDEIGEKIAQSIRLYFSDEKNRS 566


>gi|332532506|ref|ZP_08408384.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038149|gb|EGI74596.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 672

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 14/77 (18%)

Query: 548 RRKKAAYSPLDEING-----------I---GPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  K   + L+E  G           I   G    + L   F T++ I  +S ++L  + 
Sbjct: 491 KSAKNLVTALEEAKGTTLAKFLYSLGIREAGEATAQNLANHFLTLENIINASIDSLTQVS 550

Query: 594 GISKKIACKIYNHFHKN 610
            + + +A  +   F + 
Sbjct: 551 DVGEIVATHVRGFFDEE 567


>gi|312795310|ref|YP_004028232.1| DNA repair protein radC [Burkholderia rhizoxinica HKI 454]
 gi|312167085|emb|CBW74088.1| DNA repair protein radC [Burkholderia rhizoxinica HKI 454]
          Length = 239

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 11/62 (17%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI------ACKI-YNHFHKNTSHT 614
           G+G    + LL  FG+++ +  +S + L  + GI          A +I      + +   
Sbjct: 60  GLG----QQLLARFGSLRGLFSASHDELIQVTGIGPAKIARLQAATEIARRALGEQSREQ 115

Query: 615 PT 616
            T
Sbjct: 116 AT 117


>gi|194289797|ref|YP_002005704.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
 gi|254781303|sp|B3R2C2|DNLJ_CUPTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193223632|emb|CAQ69639.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
          Length = 709

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L + FG +  +  +    L  +  +   +A  I + F +
Sbjct: 548 GIRHVGEATAKDLARHFGKLDALMAADEAALLEVNDVGPVVAQSIAHFFAE 598


>gi|113868039|ref|YP_726528.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
 gi|123133949|sp|Q0KA11|DNLJ_RALEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|113526815|emb|CAJ93160.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
          Length = 709

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L + FG +  +  +    L  +  +   +A  I + F +
Sbjct: 548 GIRHVGEATAKDLARHFGKLDALMAADEAALLEVNDVGPVVAQSIAHFFAE 598


>gi|30249713|ref|NP_841783.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
 gi|75540341|sp|Q82TW6|DNLJ_NITEU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|30180750|emb|CAD85664.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
          Length = 681

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L    G +  +   + E L  I  I   +A  I + F +
Sbjct: 519 GIRHVGEATAKALASHTGDLDRLMDMNAEQLQQIPDIGPIVAQSIADFFSE 569


>gi|159040191|ref|YP_001539444.1| DNA integrity scanning protein DisA [Salinispora arenicola CNS-205]
 gi|157919026|gb|ABW00454.1| protein of unknown function DUF147 [Salinispora arenicola CNS-205]
          Length = 391

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG+++ +  ++ E L ++EG+    A  +    
Sbjct: 341 RLVGHFGSLQRLLGATVEDLQAVEGVGDARARGVREGL 378


>gi|145596779|ref|YP_001161076.1| DNA integrity scanning protein DisA [Salinispora tropica CNB-440]
 gi|145306116|gb|ABP56698.1| protein of unknown function DUF147 [Salinispora tropica CNB-440]
          Length = 391

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG+++ +  ++ E L ++EG+    A  +    
Sbjct: 341 RLVGHFGSLQRLLGATVEDLQAVEGVGDARARGVREGL 378


>gi|289422779|ref|ZP_06424617.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Peptostreptococcus anaerobius 653-L]
 gi|289156809|gb|EFD05436.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Peptostreptococcus anaerobius 653-L]
          Length = 243

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L+EI G+GP   + ++        F ++        E + ++ GI  K    + +
Sbjct: 187 ADQTKLEEIPGVGPATAKKIIDYRQTSGGFKSI--------EDIKNVTGIGDKKFENMKD 238


>gi|89889674|ref|ZP_01201185.1| Smf protein, DNA processing chain A [Flavobacteria bacterium BBFL7]
 gi|89517947|gb|EAS20603.1| Smf protein, DNA  processing chain A [Flavobacteria bacterium
           BBFL7]
          Length = 364

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           IG +  + L+++FG+   +   S   +A+IEGI  K A  I  
Sbjct: 18  IGDIMAKKLIRTFGSATAVFEQSMREIAAIEGIGDKKAQFIKA 60


>gi|329297490|ref|ZP_08254826.1| NAD-dependent DNA ligase LigA [Plautia stali symbiont]
          Length = 672

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FG ++ +  +  + L +++ + K +A  + N   + ++
Sbjct: 520 VGEATAANLANHFGELEKVMNADLDALIAVQDVGKVVAAHVRNFMEEESN 569


>gi|312077422|ref|XP_003141297.1| helix-hairpin-helix domain-containing protein family protein [Loa
           loa]
 gi|307763540|gb|EFO22774.1| helix-hairpin-helix domain-containing protein family protein [Loa
           loa]
          Length = 253

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + L+  FG+++ I+ +  + L    G+    A  IY  F 
Sbjct: 208 QRLIAIFGSIRRIANADIDRLLLCPGLGPTKAGNIYAFFR 247


>gi|229015686|ref|ZP_04172669.1| DNA ligase [Bacillus cereus AH1273]
 gi|229021878|ref|ZP_04178448.1| DNA ligase [Bacillus cereus AH1272]
 gi|228739424|gb|EEL89850.1| DNA ligase [Bacillus cereus AH1272]
 gi|228745603|gb|EEL95622.1| DNA ligase [Bacillus cereus AH1273]
          Length = 669

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKTINEIGEKMAQSVVTYFDNED 564


>gi|212710592|ref|ZP_03318720.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
           30120]
 gi|212686673|gb|EEB46201.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
           30120]
          Length = 678

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G      L   + ++  +  +  ++L +++ I + +A  + 
Sbjct: 508 KSKQTTLARFIYALGIREVGEATAANLAAHYASLDAVMAADEDSLKTVQDIGEVVAKHVV 567

Query: 605 NHFHKN 610
           + F + 
Sbjct: 568 HFFREE 573


>gi|282892421|ref|ZP_06300771.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497823|gb|EFB40184.1| hypothetical protein pah_c253o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 200

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTV---KMISRSSPETLASIEGISKKIACKI 603
           +  +  L  ++GIGP     L+    +      I      TL+ + G+ KK A ++
Sbjct: 69  RELFEILLAVSGIGPKTAIALIGHLPSTLLSAAIQGQDITTLSKVPGVGKKTAERL 124


>gi|229009789|ref|ZP_04167009.1| DNA ligase [Bacillus mycoides DSM 2048]
 gi|228751407|gb|EEM01213.1| DNA ligase [Bacillus mycoides DSM 2048]
          Length = 669

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKTINEIGEKMAQSVVTYFDNED 564


>gi|227538460|ref|ZP_03968509.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241646|gb|EEI91661.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 370

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L ++ GIGP   R LL     V+ I  +S + L +I GI+  I  ++
Sbjct: 8   ALTKVKGIGPRLSRSLLSHCDAVEAIFTASKKQLLTIPGINMAIIERL 55


>gi|325690140|gb|EGD32144.1| competence protein CelA [Streptococcus sanguinis SK115]
          Length = 239

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 183 ATETELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 235


>gi|317485271|ref|ZP_07944151.1| DNA ligase [Bilophila wadsworthia 3_1_6]
 gi|316923397|gb|EFV44603.1| DNA ligase [Bilophila wadsworthia 3_1_6]
          Length = 698

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 546 RKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           R +++      L    I  +G    + L  ++  + ++  +SPE L ++  I  ++A  I
Sbjct: 512 RAKKEATLQRLLCALGIRHVGEQTAKTLAATYADMDVLRAASPEELQNLPDIGPEVASSI 571

Query: 604 YNHFHKNTS 612
              F    +
Sbjct: 572 KAFFDDEPN 580


>gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029]
 gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138]
 gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029]
 gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138]
          Length = 870

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 7/45 (15%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           D I G+   GP +   LL+ FG+V+ +     E L +++G+S+ +
Sbjct: 185 DNIPGLPGCGPKKAAALLKQFGSVEGL----LENLDAVKGLSQTM 225


>gi|313637419|gb|EFS02883.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL S4-171]
          Length = 671

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAIHFETMDNLKLADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|289435095|ref|YP_003464967.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171339|emb|CBH27881.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 671

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAIHFETMDNLKLADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|262165212|ref|ZP_06032949.1| DNA ligase [Vibrio mimicus VM223]
 gi|262024928|gb|EEY43596.1| DNA ligase [Vibrio mimicus VM223]
          Length = 682

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F T+  I+++S + L  +  +   +A  ++  F ++ +  
Sbjct: 532 VGEATALNLAQHFLTLDAIAQASMDQLIEVPDVGGVVASHLHAFFAQSRNQQ 583


>gi|262172020|ref|ZP_06039698.1| DNA ligase [Vibrio mimicus MB-451]
 gi|261893096|gb|EEY39082.1| DNA ligase [Vibrio mimicus MB-451]
          Length = 670

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F T+  I+++S + L  +  +   +A  ++  F ++ +  
Sbjct: 520 VGEATALNLAQHFLTLDAIAQASMDQLIEVPDVGGVVASHLHAFFAQSRNQQ 571


>gi|258621988|ref|ZP_05717017.1| DNA ligase [Vibrio mimicus VM573]
 gi|258585741|gb|EEW10461.1| DNA ligase [Vibrio mimicus VM573]
          Length = 670

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F T+  I+++S + L  +  +   +A  ++  F ++ +  
Sbjct: 520 VGEATALNLAQHFLTLDAIAQASMDQLIEVPDVGGVVASHLHAFFAQSRNQQ 571


>gi|258627076|ref|ZP_05721872.1| DNA ligase [Vibrio mimicus VM603]
 gi|258580594|gb|EEW05547.1| DNA ligase [Vibrio mimicus VM603]
          Length = 670

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F T+  I+++S + L  +  +   +A  ++  F ++ +  
Sbjct: 520 VGEATALNLAQHFLTLDAIAQASMDQLIEVPDVGGVVASHLHAFFAQSRNQQ 571


>gi|229055132|ref|ZP_04195560.1| DNA ligase [Bacillus cereus AH603]
 gi|228721208|gb|EEL72737.1| DNA ligase [Bacillus cereus AH603]
          Length = 669

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKTINEIGEKMAQSVVTYFDNED 564


>gi|229131294|ref|ZP_04260196.1| DNA ligase [Bacillus cereus BDRD-ST196]
 gi|228652180|gb|EEL08115.1| DNA ligase [Bacillus cereus BDRD-ST196]
          Length = 669

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKTINEIGEKMAQSVVTYFDNED 564


>gi|148989162|ref|ZP_01820552.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73]
 gi|147925385|gb|EDK76463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP6-BS73]
          Length = 251

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ + ++  E +ASIE +   IA  +  +F    S 
Sbjct: 101 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFAAEGSE 155


>gi|15903068|ref|NP_358618.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae R6]
 gi|116516470|ref|YP_816476.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae D39]
 gi|81449679|sp|Q8DPS9|DNLJ_STRR6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|122278638|sp|Q04KH2|DNLJ_STRP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15458641|gb|AAK99828.1| DNA ligase [Streptococcus pneumoniae R6]
 gi|116077046|gb|ABJ54766.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae D39]
          Length = 652

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ + ++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFAAEGSE 556


>gi|163938297|ref|YP_001643181.1| NAD-dependent DNA ligase LigA [Bacillus weihenstephanensis KBAB4]
 gi|229165272|ref|ZP_04293059.1| DNA ligase [Bacillus cereus AH621]
 gi|254781256|sp|A9VRG3|DNLJ_BACWK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|163860494|gb|ABY41553.1| DNA ligase, NAD-dependent [Bacillus weihenstephanensis KBAB4]
 gi|228618097|gb|EEK75135.1| DNA ligase [Bacillus cereus AH621]
          Length = 669

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R   + F T+  + +++ E L +I  I +K+A  +  +F    
Sbjct: 512 GIRHVGAKAARTFAEHFETMDELVKATEEELKTINEIGEKMAQSVVTYFDNED 564


>gi|325694058|gb|EGD35976.1| competence protein CelA [Streptococcus sanguinis SK150]
          Length = 244

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 188 ATETELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 240


>gi|302389831|ref|YP_003825652.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200459|gb|ADL08029.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 390

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL+ I G+G      LL++FG  + +I  S PE L  + G  + +  K+   
Sbjct: 321 PLEFIPGVGKKTLERLLKAFGNEMNIIHHSDPEELRKVVG--EAVTEKVLAA 370


>gi|148270820|ref|YP_001245280.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermotoga petrophila RKU-1]
 gi|147736364|gb|ABQ47704.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga petrophila RKU-1]
          Length = 181

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           L  I GIGP++ + ++    +    S  S E L ++ GI +K   KI
Sbjct: 57  LMSIPGIGPVKAQRIIDYRESHGGFS--SVEELKNVSGIGEKTLEKI 101



 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 584 SSPETLASIEGISKKIACKIYNH 606
           +S E L SI GI    A +I ++
Sbjct: 52  ASLEDLMSIPGIGPVKAQRIIDY 74


>gi|160935782|ref|ZP_02083157.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441526|gb|EDP19236.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC
           BAA-613]
          Length = 651

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I GIG    ++L + F      +  +  E L +++GI   +A    ++F
Sbjct: 497 GIAGIGLANAKMLCREFKYDFDKMRHAGEEELVAVDGIGGVLAQAWMDYF 546


>gi|257387893|ref|YP_003177666.1| ribosomal protein L32e [Halomicrobium mukohataei DSM 12286]
 gi|257170200|gb|ACV47959.1| Ribosomal protein L32e [Halomicrobium mukohataei DSM 12286]
          Length = 240

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 554 YSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            + L +I+G+G  +   L ++ F TV  +  +    LA++ G+   +A +I  
Sbjct: 15  LTELTDISGVGDSKAEALREAGFETVDDVRGADQSQLANVSGVGNALAARIKA 67


>gi|94986686|ref|YP_594619.1| NAD-dependent DNA ligase [Lawsonia intracellularis PHE/MN1-00]
 gi|123385090|sp|Q1MRS8|DNLJ_LAWIP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94730935|emb|CAJ54298.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 682

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R+L  SF  +  +S +S E L  +  I  ++A  I   F    +
Sbjct: 528 GIRHVGEQTARILASSFIDLDALSSASLEDLQQLSEIGPEVASSIQAFFKNKAN 581


>gi|238061426|ref|ZP_04606135.1| DNA integrity scanning protein disA [Micromonospora sp. ATCC 39149]
 gi|237883237|gb|EEP72065.1| DNA integrity scanning protein disA [Micromonospora sp. ATCC 39149]
          Length = 373

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG+++ +  ++ E L ++EG+    A  +    
Sbjct: 323 RLVLHFGSLQRLLGATVEDLQAVEGVGDARARGVREGL 360


>gi|149195333|ref|ZP_01872420.1| DNA polymerase X family/PHP domain protein [Caminibacter
           mediatlanticus TB-2]
 gi|149134525|gb|EDM23014.1| DNA polymerase X family/PHP domain protein [Caminibacter
           mediatlanticus TB-2]
          Length = 567

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISR-SSPETLASIEGISKKIACKIYN 605
            I G+GP R R +  +F   ++  + + +    L  + G   K+  KI  
Sbjct: 97  SIEGLGPKRIRQIYDAFKVTSLDELKKYAESGELDKLPGFGPKLIEKILK 146


>gi|50914521|ref|YP_060493.1| COME operon protein 1 [Streptococcus pyogenes MGAS10394]
 gi|50903595|gb|AAT87310.1| COME operon protein 1 [Streptococcus pyogenes MGAS10394]
          Length = 220

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA+   L  I GIG  R + ++      G  K +     E L    GI +K   K+ +
Sbjct: 163 KASLEELQHIPGIGAKRAQDIIDMRDKLGGFKAL-----EDLRQASGIGEKTLEKLKD 215


>gi|85859218|ref|YP_461420.1| SMF family protein involved in DNA uptake [Syntrophus
           aciditrophicus SB]
 gi|85722309|gb|ABC77252.1| SMF family protein involved in DNA uptake [Syntrophus
           aciditrophicus SB]
          Length = 394

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  +NGIG L  R L+ +F     +  +S + L S+ GI  K A +I   FH+
Sbjct: 11  ALRSVNGIGNLGFRSLMDAFKFPHDVFHASYQDLMSVPGIGPKTASRIK-AFHE 63


>gi|150388557|ref|YP_001318606.1| RecD/TraA family helicase [Alkaliphilus metalliredigens QYMF]
 gi|149948419|gb|ABR46947.1| helicase, RecD/TraA family [Alkaliphilus metalliredigens QYMF]
          Length = 754

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           I G+G      ++  FG  ++++I  + PE L  +EGI +  A  I   F 
Sbjct: 96  IKGVGKKMAERIVDLFGMDSLEVIQYA-PERLREVEGIGRAKAETITETFR 145


>gi|319956495|ref|YP_004167758.1| holliday junction DNA helicase subunit ruva [Nitratifractor
           salsuginis DSM 16511]
 gi|319418899|gb|ADV46009.1| Holliday junction DNA helicase subunit RuvA [Nitratifractor
           salsuginis DSM 16511]
          Length = 187

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRS-SPETLASIEGISKKIACKIY 604
           R +K  +  L +ING+GP   + +  +F   +   I  +     L  + GI  K A +I 
Sbjct: 65  RNEKKMFDTLLKINGVGPKVAQAVCSTFTPESFAKIVAAKDVALLKRVPGIGPKAASRIL 124


>gi|313632855|gb|EFR99806.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL N1-067]
          Length = 678

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 515 GIRHVGAKAAKSLAIHFETMDNLKLADKETLTSINDIGEKMADSIVTYFANEE 567


>gi|57233728|ref|YP_182165.1| RadC family DNA repair protein [Dehalococcoides ethenogenes 195]
 gi|57224176|gb|AAW39233.1| DNA repair protein, RadC family [Dehalococcoides ethenogenes 195]
          Length = 271

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 16/72 (22%)

Query: 542 ITTHRKR-RKKAAYSPLDEING---------IGPLRK------RLLLQSFGTVKMISRSS 585
              HR+R R++   + LD +N          +G  R+      +  ++ FG+++ +  +S
Sbjct: 19  NAGHRQRLRERFLKAGLDGLNDYEVVDLLLTLGTPRRDCKQAAKEAIKHFGSLRAVLEAS 78

Query: 586 PETLASIEGISK 597
           P  L+SI+GI +
Sbjct: 79  PAELSSIKGIGE 90


>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
 gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
          Length = 941

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 18/73 (24%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA-----SIE-----GI-SKKIACKI 603
           D I G   +G    +  L+ FG+++ +  ++ + L       +E     GI SKK+A  I
Sbjct: 193 DNIPGLPGVGEKTAKKFLKQFGSMEELL-ANTDQLKGKMREKVETNAEQGILSKKLARII 251

Query: 604 YN---HFHKNTSH 613
            +    FH     
Sbjct: 252 IDCDVKFHAEDYE 264


>gi|290893414|ref|ZP_06556399.1| DNA ligase [Listeria monocytogenes FSL J2-071]
 gi|290557065|gb|EFD90594.1| DNA ligase [Listeria monocytogenes FSL J2-071]
          Length = 671

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|217964094|ref|YP_002349772.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23]
 gi|254781360|sp|B8DFG5|DNLJ_LISMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217333364|gb|ACK39158.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23]
 gi|307571338|emb|CAR84517.1| DNA ligase, NAD-dependent [Listeria monocytogenes L99]
          Length = 671

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|15678832|ref|NP_275949.1| DNA helicase related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|18201992|sp|O26901|HELS_METTH RecName: Full=Putative ski2-type helicase
 gi|2621900|gb|AAB85310.1| DNA helicase related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 690

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 558 DEIN------GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           D I       G+G +R R ++++FG  + +     + L  I+GI  K+A  I  +
Sbjct: 634 DAIPLVVGVRGLGRVRARKIIKTFG--EDLRHVREDELKRIDGIGPKMAGAIRRY 686


>gi|306829554|ref|ZP_07462744.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
 gi|304428640|gb|EFM31730.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
          Length = 652

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LLLQ F T++ ++++ PE +ASIE +   IA  +  +F
Sbjct: 502 GIRHVGSKASQLLLQHFHTIENLAQADPEEVASIESLGSVIAQGLQTYF 550


>gi|261856718|ref|YP_003264001.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Halothiobacillus neapolitanus c2]
 gi|261837187|gb|ACX96954.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Halothiobacillus neapolitanus c2]
          Length = 100

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 16/72 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606
           A  + LDE+ GIGP     ++           +     S + L  ++GI  K   K+ +H
Sbjct: 34  ATQAQLDEVKGIGPKLSAAIVAY-------REAHHGFKSVDELKEVKGIGDKSFLKLKDH 86

Query: 607 F----HKNTSHT 614
           F    H+  + T
Sbjct: 87  FVVEGHQKPAAT 98


>gi|46907988|ref|YP_014377.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|81565576|sp|Q71YR0|DNLJ_LISMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46881258|gb|AAT04554.1| DNA ligase, NAD-dependent [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 671

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|47092911|ref|ZP_00230693.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858]
 gi|254825997|ref|ZP_05230998.1| DNA ligase [Listeria monocytogenes FSL J1-194]
 gi|254853668|ref|ZP_05243016.1| DNA ligase [Listeria monocytogenes FSL R2-503]
 gi|254932796|ref|ZP_05266155.1| DNA ligase [Listeria monocytogenes HPB2262]
 gi|300765954|ref|ZP_07075926.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017]
 gi|47018737|gb|EAL09488.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858]
 gi|258607047|gb|EEW19655.1| DNA ligase [Listeria monocytogenes FSL R2-503]
 gi|293584349|gb|EFF96381.1| DNA ligase [Listeria monocytogenes HPB2262]
 gi|293595236|gb|EFG02997.1| DNA ligase [Listeria monocytogenes FSL J1-194]
 gi|300513340|gb|EFK40415.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017]
 gi|328466510|gb|EGF37653.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 1816]
 gi|328473899|gb|EGF44721.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 220]
 gi|332312198|gb|EGJ25293.1| DNA ligase [Listeria monocytogenes str. Scott A]
          Length = 671

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|226224361|ref|YP_002758468.1| DNA ligase [Listeria monocytogenes Clip81459]
 gi|254781359|sp|C1KW57|DNLJ_LISMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225876823|emb|CAS05532.1| Putative DNA ligase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
          Length = 671

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|170290897|ref|YP_001737713.1| ERCC4 domain-containing protein [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170174977|gb|ACB08030.1| ERCC4 domain protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 215

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 546 RKRRKKA---AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           R+R+ K+   AYS L     IGP     L+  F  ++ I  +    L S+  I +  A K
Sbjct: 137 RRRKAKSFEEAYSILLSFPSIGPKSAEKLMSEFKNLREIFNADFPKLKSL--IGEAKARK 194

Query: 603 IYNHFH 608
                +
Sbjct: 195 FREVLN 200


>gi|194335632|ref|YP_002017426.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1]
 gi|254781384|sp|B4SCX5|DNLJ_PELPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194308109|gb|ACF42809.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1]
          Length = 674

 Score = 45.5 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRL-RDEAHRFAITTHRKRRKKAAYS 555
           +AKG  +  G + +F+++ +   L    P     Q + R      A+   R++  +    
Sbjct: 470 VAKGLVKDPG-DLYFLQEPQLEKLERMGPKSA--QNILR------ALEKSREKSYERLLY 520

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +G    R L Q+  ++ ++  +S E LA+I  I   +A  I ++F K
Sbjct: 521 AL-GIRHVGRATARELSQACPSIDLLREASEEQLATIPDIGPVVARSIIDYFAK 573


>gi|313618396|gb|EFR90422.1| DNA ligase [Listeria innocua FSL S4-378]
          Length = 303

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 140 GIRHVGAKAAKSLAVHFETMDNLKIADKETLTSINDIGEKMADSIVTYFANEE 192


>gi|242003235|ref|XP_002422661.1| DNA excision repair protein ERCC-1, putative [Pediculus humanus
           corporis]
 gi|212505472|gb|EEB09923.1| DNA excision repair protein ERCC-1, putative [Pediculus humanus
           corporis]
          Length = 260

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           S L  I  I      +LL ++GT++ I ++S  +L+   GI  + A ++Y   H++
Sbjct: 163 SALITIRSINKTDATILLSTYGTLRGILKASENSLSLCPGIGPQKASRLYKTLHES 218


>gi|304312656|ref|YP_003812254.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
 gi|301798389|emb|CBL46613.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
          Length = 677

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L + + T+  + R+   +L  +  I    A  I   F
Sbjct: 524 VGEATAQTLARHYETLDALLRADEASLLEVPDIGPVSARNIVQFF 568


>gi|89099042|ref|ZP_01171921.1| hypothetical protein B14911_08582 [Bacillus sp. NRRL B-14911]
 gi|89086172|gb|EAR65294.1| hypothetical protein B14911_08582 [Bacillus sp. NRRL B-14911]
          Length = 390

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL+ I G+GP     LL  FGT + ++ R   E L  +  I  K+A  I   
Sbjct: 320 PLEFIPGLGPKILERLLDHFGTEMDILHRVPKEALEEV--IPDKLARLIVKA 369


>gi|313113935|ref|ZP_07799492.1| DNA repair protein RadC [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623730|gb|EFQ07128.1| DNA repair protein RadC [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 247

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           L+  FG    +  +S E L ++EG+    A  ++
Sbjct: 60  LIDRFGDFAAVLEASEEELCTVEGVGPATARMLH 93


>gi|284037272|ref|YP_003387202.1| DNA protecting protein DprA [Spirosoma linguale DSM 74]
 gi|283816565|gb|ADB38403.1| DNA protecting protein DprA [Spirosoma linguale DSM 74]
          Length = 370

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L  + G+G +  R L+   G+   + RS    L  + GI +  A  I  
Sbjct: 10  ALTLVPGVGSILIRQLISYCGSAADVFRSPLARLTKVPGIGEVTARAILK 59


>gi|18181989|dbj|BAB83902.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
           pernix]
          Length = 319

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602
           ++ G+GP   + L+++ + T++ I+ ++P+ ++   GI    A K
Sbjct: 13  DLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQK 57


>gi|242238286|ref|YP_002986467.1| NAD-dependent DNA ligase LigA [Dickeya dadantii Ech703]
 gi|242130343|gb|ACS84645.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech703]
          Length = 684

 Score = 45.5 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 20/52 (38%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   FGT+  +  +  +TL  +  +   +A  + +   +  +  
Sbjct: 531 VGEATAAGLAAHFGTLDALMTADVDTLQQVPDVGIVVATHVRHFLDEEHNQQ 582


>gi|197120145|ref|YP_002140572.1| DNA repair protein RadC [Geobacter bemidjiensis Bem]
 gi|197089505|gb|ACH40776.1| protein of unknown function DUF2466 [Geobacter bemidjiensis Bem]
          Length = 231

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +  S LD    +G    R L+  FG++ +++ +S   L  ++GI    A  I    
Sbjct: 43  SRRSALD----LG----RELMLQFGSLSLLADASCSELQKVKGIGPAKATCILAAL 90


>gi|254993539|ref|ZP_05275729.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-064]
          Length = 665

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|257077037|ref|ZP_05571398.1| ski2-like helicase [Ferroplasma acidarmanus fer1]
          Length = 681

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 561 NGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
             +G +R R L  + F ++  I+ +  E ++ I G S K+A  I  
Sbjct: 625 PQVGRVRGRRLYNNGFKSIDDIANARVEDISRIFGFSTKLAKDIIE 670


>gi|86143308|ref|ZP_01061710.1| phosphoribosylformimino-5-aminoimidazole carboxamide
          ribonucleotide(ProFAR) isomerase [Leeuwenhoekiella
          blandensis MED217]
 gi|85830213|gb|EAQ48673.1| phosphoribosylformimino-5-aminoimidazole carboxamide
          ribonucleotide(ProFAR) isomerase [Leeuwenhoekiella
          blandensis MED217]
          Length = 366

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 27/89 (30%)

Query: 12 VYQMLDIAGRVLYVGKAYNLQKRIKSY-------MHSNNHTHRITHMISQINNIRFTVTC 64
           Y + +    VLYVGK  +L+ R++ +            + +       ++       T 
Sbjct: 5  CYILSNKNRTVLYVGKTRDLRTRLQQHKKGVGAVFTKKYNCY-------ELLYFETFKTG 57

Query: 65 TEVEALLLEA-----------NMIKRLKP 82
          +E  A   E            N+IK   P
Sbjct: 58 SE--AWQREQQLKRWHKEWKWNLIKDKNP 84


>gi|297544020|ref|YP_003676322.1| RecD/TraA family helicase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841795|gb|ADH60311.1| helicase, RecD/TraA family [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 735

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I GIGP+  R +++ FG  ++ +I  + PE L  I+G+S +   +I
Sbjct: 81  KFLASGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132


>gi|237753409|ref|ZP_04583889.1| competence protein 1 [Helicobacter winghamensis ATCC BAA-430]
 gi|229375676|gb|EEO25767.1| competence protein 1 [Helicobacter winghamensis ATCC BAA-430]
          Length = 90

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A+   L  + GIG ++ + +L       F +V        + L +++G   K   KI N 
Sbjct: 23  ASKQELMSVKGIGEIKAQAILDYRAKQPFKSV--------DELVNVKGFGDKSVEKIKNE 74

Query: 607 FHKNTSHTPT 616
           F  +   T T
Sbjct: 75  FSVSEVKTET 84


>gi|329924834|ref|ZP_08279795.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5]
 gi|328940396|gb|EGG36721.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5]
          Length = 670

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           AI    K +++   S L    I   G    ++L   +  +  +  ++ E L  +  +   
Sbjct: 497 AIE---KSKERDLASFLFALGIPNTGKSTTKMLADHYRDLNRVMAATAEELVELPDVGGI 553

Query: 599 IACKIYNHF 607
           +A  I  +F
Sbjct: 554 VAESIAGYF 562


>gi|313608726|gb|EFR84551.1| ComE operon protein 1 [Listeria monocytogenes FSL F2-208]
          Length = 155

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           A    L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  +   N
Sbjct: 99  ATKDDLQQVPGIGESKATAIIEH-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYLDAN 155



 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 576 GTVK-MISRSSPETLASIEGISKKIACKIYNH 606
           G+ K  ++ ++ + L  + GI +  A  I  H
Sbjct: 90  GSAKINLNSATKDDLQQVPGIGESKATAIIEH 121


>gi|300361107|ref|ZP_07057284.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
 gi|300353726|gb|EFJ69597.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
          Length = 668

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+ +G    RL+L+ +  ++ +S+ +   L SI+ I + IA  +  +F++ ++ 
Sbjct: 513 GIDHVGAKAARLILEKYKNLEKVSQLTVPELISIDTIGETIAESLTAYFNQPSAQ 567


>gi|225868912|ref|YP_002744860.1| competence protein [Streptococcus equi subsp. zooepidemicus]
 gi|225702188|emb|CAW99904.1| putative competence protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 226

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           +A+ + L  I GIG  R + ++    ++      S E L  + GI  K   K+ 
Sbjct: 169 RASLADLQSIPGIGAKRAQDIIDVRESLGGFK--SLEDLRKVSGIGAKTLEKLK 220


>gi|261409569|ref|YP_003245810.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. Y412MC10]
 gi|261286032|gb|ACX68003.1| DNA ligase, NAD-dependent [Paenibacillus sp. Y412MC10]
          Length = 670

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           AI    K +++   S L    I   G    ++L   +  +  +  ++ E L  +  +   
Sbjct: 497 AIE---KSKERDLASFLFALGIPNTGKSTTKMLADHYRDLNRVMAATAEELVELPDVGGI 553

Query: 599 IACKIYNHF 607
           +A  I  +F
Sbjct: 554 VAESIAGYF 562


>gi|52081286|ref|YP_080077.1| DNA repair protein RadC [Bacillus licheniformis ATCC 14580]
 gi|52786665|ref|YP_092494.1| DNA repair protein RadC [Bacillus licheniformis ATCC 14580]
 gi|81690952|sp|Q65GL3|Y2933_BACLD RecName: Full=UPF0758 protein BLi02933/BL00636
 gi|52004497|gb|AAU24439.1| DNA repair protein [Bacillus licheniformis ATCC 14580]
 gi|52349167|gb|AAU41801.1| RadC [Bacillus licheniformis ATCC 14580]
          Length = 224

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LLQ+F  ++++  +S E L+SI GI +  A +I    
Sbjct: 49  RLLQTFDGLRLLKEASAEELSSISGIGRAKAVQILAAL 86


>gi|226311419|ref|YP_002771313.1| DNA repair protein RadC [Brevibacillus brevis NBRC 100599]
 gi|226094367|dbj|BAH42809.1| probable DNA repair protein RadC [Brevibacillus brevis NBRC 100599]
          Length = 232

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL  FG ++ ++++S   L  ++GI    A +++  F
Sbjct: 56  QRLLARFGDLRGLAQASHAELTELKGIGPVKAIELHAAF 94


>gi|163846991|ref|YP_001635035.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524813|ref|YP_002569284.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl]
 gi|189045746|sp|A9WA87|RUVA_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|254766952|sp|B9LCT8|RUVA_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|163668280|gb|ABY34646.1| Holliday junction DNA helicase RuvA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448692|gb|ACM52958.1| Holliday junction DNA helicase RuvA [Chloroflexus sp. Y-400-fl]
          Length = 195

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYN 605
           ++  +  L  ++G+GP     LL S G+   I +S        LA + GI KK A +I  
Sbjct: 68  QRNLFEQLIGVSGVGPKIALNLLSS-GSPDEIQKSIAGGDIARLARVPGIGKKTAERIVL 126

Query: 606 HFH 608
              
Sbjct: 127 ELR 129


>gi|75760632|ref|ZP_00740661.1| DNA-binding protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218895219|ref|YP_002443630.1| putative DNA-binding protein [Bacillus cereus G9842]
 gi|228898837|ref|ZP_04063119.1| DNA integrity scanning protein disA [Bacillus thuringiensis IBL
           4222]
 gi|228905881|ref|ZP_04069778.1| DNA integrity scanning protein disA [Bacillus thuringiensis IBL
           200]
 gi|228937386|ref|ZP_04100032.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228963184|ref|ZP_04124353.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228970272|ref|ZP_04130931.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976842|ref|ZP_04137254.1| DNA integrity scanning protein disA [Bacillus thuringiensis Bt407]
 gi|229074145|ref|ZP_04207191.1| DNA integrity scanning protein disA [Bacillus cereus Rock4-18]
 gi|229094806|ref|ZP_04225811.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-29]
 gi|229100882|ref|ZP_04231687.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-28]
 gi|229113760|ref|ZP_04243195.1| DNA integrity scanning protein disA [Bacillus cereus Rock1-3]
 gi|226729432|sp|B7ISZ3|DISA_BACC2 RecName: Full=DNA integrity scanning protein disA
 gi|74491875|gb|EAO55062.1| DNA-binding protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218543142|gb|ACK95536.1| putative DNA-binding protein [Bacillus cereus G9842]
 gi|228669631|gb|EEL25038.1| DNA integrity scanning protein disA [Bacillus cereus Rock1-3]
 gi|228682536|gb|EEL36608.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-28]
 gi|228688549|gb|EEL42422.1| DNA integrity scanning protein disA [Bacillus cereus Rock3-29]
 gi|228708915|gb|EEL61042.1| DNA integrity scanning protein disA [Bacillus cereus Rock4-18]
 gi|228782812|gb|EEM30978.1| DNA integrity scanning protein disA [Bacillus thuringiensis Bt407]
 gi|228789381|gb|EEM37301.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228796442|gb|EEM43881.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228822219|gb|EEM68201.1| DNA integrity scanning protein disA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228853696|gb|EEM98456.1| DNA integrity scanning protein disA [Bacillus thuringiensis IBL
           200]
 gi|228860737|gb|EEN05115.1| DNA integrity scanning protein disA [Bacillus thuringiensis IBL
           4222]
 gi|326937877|gb|AEA13773.1| DNA integrity scanning protein DisA [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 357

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R     S +  +    PL    L+  F T++ + R++   L  +EGI +  A KI     
Sbjct: 289 RGYRITSKISRVP---PLIIENLINRFKTLQGVCRATIHELDDVEGIGEVRAKKIREGLK 345

Query: 609 K 609
           +
Sbjct: 346 R 346


>gi|189461356|ref|ZP_03010141.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136]
 gi|189431885|gb|EDV00870.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136]
          Length = 667

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 27/50 (54%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + ++F +++ ++ ++ + L  ++ I +KIA  I  +F    +
Sbjct: 515 VGETVAKKVAKAFRSIEALASANLDDLIHVDEIGEKIAGSIIQYFANEKN 564


>gi|163751929|ref|ZP_02159142.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
 gi|161328212|gb|EDP99377.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
          Length = 690

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 6/48 (12%), Positives = 20/48 (41%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F ++  +  ++ E    ++ +   +A  + + F ++
Sbjct: 540 VGEATAANLANYFKSLDKLKAANAEEFIKVDDVGTIVAQHLTHFFAQS 587


>gi|167039107|ref|YP_001662092.1| RecD/TraA family helicase [Thermoanaerobacter sp. X514]
 gi|300913303|ref|ZP_07130620.1| helicase, RecD/TraA family [Thermoanaerobacter sp. X561]
 gi|307723683|ref|YP_003903434.1| RecD/TraA family helicase [Thermoanaerobacter sp. X513]
 gi|166853347|gb|ABY91756.1| helicase, RecD/TraA family [Thermoanaerobacter sp. X514]
 gi|300889988|gb|EFK85133.1| helicase, RecD/TraA family [Thermoanaerobacter sp. X561]
 gi|307580744|gb|ADN54143.1| helicase, RecD/TraA family [Thermoanaerobacter sp. X513]
          Length = 735

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I GIGP+  R +++ FG  ++ +I  + PE L  I+G+S +   +I
Sbjct: 81  KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132


>gi|91773967|ref|YP_566659.1| DNA repair and recombination protein RadA [Methanococcoides
           burtonii DSM 6242]
 gi|121691598|sp|Q12UG7|RADA_METBU RecName: Full=DNA repair and recombination protein radA
 gi|91712982|gb|ABE52909.1| DNA repair and recombination protein RadA [Methanococcoides
           burtonii DSM 6242]
          Length = 325

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L++++ +GP   + L  + F T++ I+ +SP  LA+   I +  A KI N   ++  
Sbjct: 6   LEDLDHVGPATAQKLKDAGFTTIEAIAVASPAELANSAEIGESTAAKIINAARQSAD 62


>gi|86608809|ref|YP_477571.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123724461|sp|Q2JLU3|DNLJ_SYNJB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86557351|gb|ABD02308.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 686

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G +  ++L   F T ++++++S ET+A I GI  ++A  +   F +
Sbjct: 525 GIPHVGVVTAQILAGHFPTPELLAQASAETIAQIYGIGAEVAEAVVAWFAE 575



 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +I G+G  R   L++S G  TV  + R +PE L  +EG+  + + K+     ++    
Sbjct: 459 DIEGLGEKRAAQLVESLGVRTVADLYRLTPEQLQGLEGMGSRSSQKLVQAIQRSRQQP 516


>gi|50122504|ref|YP_051671.1| NAD-dependent DNA ligase LigA [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644069|sp|Q6D165|DNLJ_ERWCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|49613030|emb|CAG76481.1| DNA ligase [Pectobacterium atrosepticum SCRI1043]
          Length = 681

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   FG+++ +  +  + L  +  + K +A  + +   +  + T
Sbjct: 520 VGESTAANLAAHFGSLETLFAADEDALLEVPDVGKIVAAHVRHFLEEEHNQT 571


>gi|167038184|ref|YP_001665762.1| RecD/TraA family helicase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116593|ref|YP_004186752.1| helicase, RecD/TraA family [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166857018|gb|ABY95426.1| helicase, RecD/TraA family [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929684|gb|ADV80369.1| helicase, RecD/TraA family [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 735

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I GIGP+  R +++ FG  ++ +I  + PE L  I+G+S +   +I
Sbjct: 81  KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132


>gi|323702066|ref|ZP_08113734.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532948|gb|EGB22819.1| Holliday junction DNA helicase RuvA [Desulfotomaculum nigrificans
           DSM 574]
          Length = 199

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 556 PLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKI 603
            L ++ G+GP     ++       F  +  I+  +   L  + G+ KK A +I
Sbjct: 72  ALLDVAGVGPKVALAVVAHLPPGVFKGI--IASGNVNQLVKVPGVGKKTAQRI 122


>gi|307265487|ref|ZP_07547042.1| helicase, RecD/TraA family [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919441|gb|EFN49660.1| helicase, RecD/TraA family [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 735

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I GIGP+  R +++ FG  ++ +I  + PE L  I+G+S +   +I
Sbjct: 81  KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132


>gi|289577707|ref|YP_003476334.1| helicase, RecD/TraA family [Thermoanaerobacter italicus Ab9]
 gi|289527420|gb|ADD01772.1| helicase, RecD/TraA family [Thermoanaerobacter italicus Ab9]
          Length = 735

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I GIGP+  R +++ FG  ++ +I  + PE L  I+G+S +   +I
Sbjct: 81  KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132


>gi|255654223|ref|ZP_05399632.1| putative DNA-binding protein [Clostridium difficile QCD-23m63]
 gi|296452507|ref|ZP_06894204.1| RecD/TraA family helicase [Clostridium difficile NAP08]
 gi|296881081|ref|ZP_06905024.1| RecD/TraA family helicase [Clostridium difficile NAP07]
 gi|296258612|gb|EFH05510.1| RecD/TraA family helicase [Clostridium difficile NAP08]
 gi|296427947|gb|EFH13851.1| RecD/TraA family helicase [Clostridium difficile NAP07]
          Length = 739

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I+GIG    + ++  FG  T+++I   SPE L  +EGI  K   +I   + ++
Sbjct: 88  IHGIGEKMAKRIIDKFGVDTLEVIQN-SPEKLQEVEGIGSKKVKQIVKSYEED 139


>gi|47095684|ref|ZP_00233291.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854]
 gi|254900737|ref|ZP_05260661.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes J0161]
 gi|254913778|ref|ZP_05263790.1| DNA ligase [Listeria monocytogenes J2818]
 gi|254938165|ref|ZP_05269862.1| DNA ligase [Listeria monocytogenes F6900]
 gi|284802202|ref|YP_003414067.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578]
 gi|284995344|ref|YP_003417112.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923]
 gi|47015969|gb|EAL06895.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854]
 gi|258610778|gb|EEW23386.1| DNA ligase [Listeria monocytogenes F6900]
 gi|284057764|gb|ADB68705.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578]
 gi|284060811|gb|ADB71750.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923]
 gi|293591794|gb|EFG00129.1| DNA ligase [Listeria monocytogenes J2818]
          Length = 671

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|326389597|ref|ZP_08211163.1| helicase, RecD/TraA family [Thermoanaerobacter ethanolicus JW 200]
 gi|325994312|gb|EGD52738.1| helicase, RecD/TraA family [Thermoanaerobacter ethanolicus JW 200]
          Length = 735

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I GIGP+  R +++ FG  ++ +I  + PE L  I+G+S +   +I
Sbjct: 81  KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIETA-PERLKEIKGLSDEKIKRI 132


>gi|170079241|ref|YP_001735879.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
 gi|254781436|sp|B1XLV0|DNLJ_SYNP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169886910|gb|ACB00624.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
          Length = 678

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 28/52 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G +   +L Q+F T++ + ++S   L  + GI ++IA  + + F  + +  
Sbjct: 524 VGKVNAEILAQNFPTLEQLQKASFAQLQGVYGIGEEIAQSVVDWFRVDANQQ 575


>gi|325284173|ref|YP_004256714.1| DNA protecting protein DprA [Deinococcus proteolyticus MRP]
 gi|324315982|gb|ADY27097.1| DNA protecting protein DprA [Deinococcus proteolyticus MRP]
          Length = 374

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            G+G  R   L + FGT +      PE L  + G+ ++ A  I
Sbjct: 26  PGLGTRRIEALRRHFGTAQAALEVPPEALREVPGLDRRSAAAI 68


>gi|313905061|ref|ZP_07838431.1| helicase, RecD/TraA family [Eubacterium cellulosolvens 6]
 gi|313470131|gb|EFR65463.1| helicase, RecD/TraA family [Eubacterium cellulosolvens 6]
          Length = 751

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I G+G      +++ FG  T+  I    PE LA ++GIS++ A +I
Sbjct: 89  IKGVGAALAARIMKHFGEDTL-RIMEEEPERLAEVKGISERKAREI 133


>gi|289642343|ref|ZP_06474491.1| protein of unknown function DUF147 [Frankia symbiont of Datisca
           glomerata]
 gi|289507875|gb|EFD28826.1| protein of unknown function DUF147 [Frankia symbiont of Datisca
           glomerata]
          Length = 380

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 18/38 (47%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  F T++ +  +  + L ++EG+ +  A  I    
Sbjct: 330 RLVDHFSTLQKLLAAGVDDLQAVEGVGEARARAIREGL 367


>gi|255026038|ref|ZP_05298024.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-003]
          Length = 671

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|16803798|ref|NP_465283.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes EGD-e]
 gi|224499523|ref|ZP_03667872.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes Finland 1988]
 gi|224503316|ref|ZP_03671623.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL R2-561]
 gi|81508669|sp|Q8Y6D0|DNLJ_LISMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16411212|emb|CAC99836.1| lmo1758 [Listeria monocytogenes EGD-e]
          Length = 671

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|89094416|ref|ZP_01167356.1| DNA ligase [Oceanospirillum sp. MED92]
 gi|89081308|gb|EAR60540.1| DNA ligase [Oceanospirillum sp. MED92]
          Length = 674

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G    R L   F  +  +  +S E L  +  +   +A  I + F ++
Sbjct: 519 VGEATARSLAMHFLDLPALIEASEEALLEVPDVGPIVAKHIKSFFQQS 566


>gi|255099292|ref|ZP_05328269.1| putative DNA-binding protein [Clostridium difficile QCD-63q42]
          Length = 739

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I+GIG    + ++  FG  T+++I   SPE L  +EGI  K   +I   + ++
Sbjct: 88  IHGIGEKMAKRIIDKFGVDTLEVIQN-SPEKLQEVEGIGSKKVKQIVKSYEED 139


>gi|157364326|ref|YP_001471093.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermotoga lettingae TMO]
 gi|157314930|gb|ABV34029.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga lettingae TMO]
          Length = 180

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 14/53 (26%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACK 602
            L EI GIGP + R +L        F ++        E L ++ GI +  A K
Sbjct: 59  ELLEIPGIGPAKARSILDYRESNGPFQSI--------EDLTNVSGIGRATAEK 103



 Score = 37.0 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 581 ISRSSPETLASIEGISKKIACKIYNH 606
           I+ ++ E L  I GI    A  I ++
Sbjct: 52  INSATYEELLEIPGIGPAKARSILDY 77


>gi|126697704|ref|YP_001086601.1| putative DNA-binding protein [Clostridium difficile 630]
 gi|254973791|ref|ZP_05270263.1| putative DNA-binding protein [Clostridium difficile QCD-66c26]
 gi|255091180|ref|ZP_05320658.1| putative DNA-binding protein [Clostridium difficile CIP 107932]
 gi|255312835|ref|ZP_05354418.1| putative DNA-binding protein [Clostridium difficile QCD-76w55]
 gi|255515594|ref|ZP_05383270.1| putative DNA-binding protein [Clostridium difficile QCD-97b34]
 gi|255648688|ref|ZP_05395590.1| putative DNA-binding protein [Clostridium difficile QCD-37x79]
 gi|260681910|ref|YP_003213195.1| putative DNA-binding protein [Clostridium difficile CD196]
 gi|260685508|ref|YP_003216641.1| putative DNA-binding protein [Clostridium difficile R20291]
 gi|115249141|emb|CAJ66952.1| putative DNA helicase, RecD/TraA type [Clostridium difficile]
 gi|260208073|emb|CBA60304.1| putative DNA-binding protein [Clostridium difficile CD196]
 gi|260211524|emb|CBE01690.1| putative DNA-binding protein [Clostridium difficile R20291]
          Length = 739

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I+GIG    + ++  FG  T+++I   SPE L  +EGI  K   +I   + ++
Sbjct: 88  IHGIGEKMAKRIIDKFGVDTLEVIQN-SPEKLQEVEGIGSKKVKQIVKSYEED 139


>gi|28212198|ref|NP_783142.1| DNA integrity scanning protein DisA [Clostridium tetani E88]
 gi|75541601|sp|Q890L8|DISA_CLOTE RecName: Full=DNA integrity scanning protein disA
 gi|28204642|gb|AAO37079.1| putative DNA-binding protein [Clostridium tetani E88]
          Length = 360

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           ++F  +K +  +S E L  +EGI +  A  I N   +
Sbjct: 310 KNFKELKAVMEASYEQLDKVEGIGEARAKAIKNGLRR 346


>gi|119358057|ref|YP_912701.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Chlorobium phaeobacteroides DSM 266]
 gi|119355406|gb|ABL66277.1| helix-hairpin-helix motif protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 175

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           I+ +     KA+   L +I G+GP+  + L+  F   K    S+ E L  ++GI KK   
Sbjct: 113 ISFN-----KASEKQLQKIPGVGPVMAKRLVA-FRASKGGRVSNVEQLLEVKGIGKKKLE 166

Query: 602 KIYNHF 607
            +  H 
Sbjct: 167 VLRKHL 172


>gi|222481028|ref|YP_002567265.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222453930|gb|ACM58195.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 343

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L+++ G+GP     L+++ F + + I+ +SP  +++   I +  A  I N 
Sbjct: 5   ELEDLPGVGPATADKLVENGFESYQSIAVASPGEMSNTADIGESSASDIINA 56


>gi|48478452|ref|YP_024158.1| ski2-like helicase [Picrophilus torridus DSM 9790]
 gi|48431100|gb|AAT43965.1| helicase involved in UV-protection [Picrophilus torridus DSM 9790]
          Length = 674

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L +I  +G +R R L  + F TV  I+RSSPE +  I G SK +A +I N
Sbjct: 612 LIKIPKVGRVRARRLYDNGFKTVDDIARSSPENIEKIFGFSKNLAAEIVN 661


>gi|255305078|ref|ZP_05349250.1| putative DNA-binding protein [Clostridium difficile ATCC 43255]
          Length = 739

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I+GIG    + ++  FG  T+++I   SPE L  +EGI  K   +I   + ++
Sbjct: 88  IHGIGEKMAKRIIDKFGVDTLEVIQN-SPEKLQEVEGIGSKKVKQIVKSYEED 139


>gi|124504849|ref|XP_001351167.1| N2227-like protein, putative [Plasmodium falciparum 3D7]
 gi|3649764|emb|CAB11113.1| N2227-like protein, putative [Plasmodium falciparum 3D7]
          Length = 955

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/253 (6%), Positives = 53/253 (20%), Gaps = 2/253 (0%)

Query: 127 SVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHE 186
           + ++ +   ++         C +    H    C       C   C     +       + 
Sbjct: 354 NKNSCDNHCDNHCDNHSDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNH 413

Query: 187 AKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFS 246
                     N  +    N          ++   +       +H  NH D+  +      
Sbjct: 414 CDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNH 473

Query: 247 LYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLS 306
             ++ +  C   C  H   +          +    +           + D  C  +    
Sbjct: 474 CDNHSDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNH 533

Query: 307 EEAEETSLLEISFFKQYGYKVKITVPKQGEKR--KIIEQALINAHRSHTQKLSTEISHQM 364
            +    +  +                   +       +   +N           +     
Sbjct: 534 CDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNNKMNRTHLMNSNTKGDDQTCK 593

Query: 365 ILKDFTKKFALPH 377
              +++   +  +
Sbjct: 594 NTNEYSDTSSNHY 606



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/258 (10%), Positives = 46/258 (17%), Gaps = 9/258 (3%)

Query: 138 LQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHN 197
             +      C +    H    C       C   C     +       +           N
Sbjct: 353 CNKNSCDNHCDNHCDNHSDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDN 412

Query: 198 LKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLA--- 254
             +    N        D      H D         + ++   N  D     H  N     
Sbjct: 413 HCDNHCDN--HCDNHCD-NHCDNHCDNHCDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNH 469

Query: 255 CIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSL 314
           C   C  H   +          +    +    S      + D  C  +     +    + 
Sbjct: 470 CDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNH 529

Query: 315 LEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFA 374
            +                   +     +    N   +H                 +    
Sbjct: 530 CDNHCDNHCDNHCDNHCDNHCD--NHCDNHCDNHCDNHCDNHCDNNKMNRTHLMNSNTKG 587

Query: 375 LPHIPKRIEIY-DNSHIM 391
                K    Y D S   
Sbjct: 588 DDQTCKNTNEYSDTSSNH 605



 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/267 (7%), Positives = 48/267 (17%), Gaps = 17/267 (6%)

Query: 132 EKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFL 191
           +  ++S  ++   ++  D+   +    C       C         +       +      
Sbjct: 342 DDNMDSSDKSSCNKNSCDNHCDNH---CDNHSDNHCDNHSDNHCDNHCDNHCDNHCDNHC 398

Query: 192 SGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNK 251
                N  +    N               H D         + ++   N  D     H+ 
Sbjct: 399 DNHCDNHCDNHCDN-----------HCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHSD 447

Query: 252 NLACIQT-CFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAE 310
           N              +              ++    ++             +       +
Sbjct: 448 NHCDNHCDNHCDNHCDNHCDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHSDNHCD 507

Query: 311 ETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFT 370
                                          +    N   +H    +   +H     D  
Sbjct: 508 NHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNH--CDNHCDNHCDNHCDNH 565

Query: 371 KKFALPHIPKRIEIYDNSHIMGCSAVG 397
                 +         NS+  G     
Sbjct: 566 CDNHCDNNKMNRTHLMNSNTKGDDQTC 592



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/285 (8%), Positives = 56/285 (19%), Gaps = 4/285 (1%)

Query: 131 VEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKF 190
            +   ++         C +    H    C       C   C     +       +     
Sbjct: 386 CDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNH 445

Query: 191 LSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHN 250
                 N  +    N        D      H D  +      + ++   N  D     H+
Sbjct: 446 SDNHCDNHCDNHCDN--HCDNHCD-NHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHS 502

Query: 251 KNLACIQT-CFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEA 309
            N              +               +    ++             +       
Sbjct: 503 DNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHC 562

Query: 310 EETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDF 369
           +          K     +  +  K  ++         +   +H      E ++ ++    
Sbjct: 563 DNHCDNHCDNNKMNRTHLMNSNTKGDDQTCKNTNEYSDTSSNHYCNNIEEDTYNVVNPGV 622

Query: 370 TKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRK 414
                     K I+ Y N            +   EN    N   +
Sbjct: 623 DLDVHNIIDSKNIKDYHNDIKENMCNNNKTLHADENMPNDNICAR 667


>gi|308069576|ref|YP_003871181.1| hypothetical protein PPE_02816 [Paenibacillus polymyxa E681]
 gi|305858855|gb|ADM70643.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 420

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603
           PL+ I G+G  +   LL +FGT   I    + E LA++ G  K +A +I
Sbjct: 350 PLEFIPGLGKAKLNQLLAAFGTEMNILHEVTQEELAAVVG--KVLAEQI 396


>gi|226357440|ref|YP_002787179.1| NAD-dependent DNA ligase [Deinococcus deserti VCD115]
 gi|254778147|sp|C1D1Y6|DNLJ1_DEIDV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|226319430|gb|ACO47425.1| putative NAD-dependent DNA ligase [Deinococcus deserti VCD115]
          Length = 686

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 22/46 (47%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +G      + + + +++ I ++S + LA I  + +++A  I     
Sbjct: 532 VGEGTATRIARVYRSLEDIRQASVDDLARIPDVGRQVAEGIVQGLR 577


>gi|212721946|ref|NP_001131279.1| hypothetical protein LOC100192592 [Zea mays]
 gi|194691068|gb|ACF79618.1| unknown [Zea mays]
          Length = 397

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I   S + LA   GI ++   ++Y+ FH+
Sbjct: 266 FGSLSQIMNGSMDELARCPGIGERKVRRLYDTFHE 300


>gi|187251632|ref|YP_001876114.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
 gi|254781329|sp|B2KE31|DNLJ_ELUMP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|186971792|gb|ACC98777.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
          Length = 656

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KK + S +     I  +G     +L   F  ++ +  +S E    I  I   +   +Y+ 
Sbjct: 494 KKRSLSRVLYAFGIRHVGQKTGEILANHFEDIENMLAASLEDFQKINEIGPVVGQSVYDF 553


>gi|84497240|ref|ZP_00996062.1| putative DNA-binding protein [Janibacter sp. HTCC2649]
 gi|84382128|gb|EAP98010.1| putative DNA-binding protein [Janibacter sp. HTCC2649]
          Length = 360

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FG+++ +  +  + L  +EG+ +  A  +    
Sbjct: 310 RLVEHFGSLQKLLAAGVDDLMGVEGVGEGRARLVREGL 347


>gi|303244732|ref|ZP_07331062.1| DNA repair and recombination protein RadA [Methanothermococcus
           okinawensis IH1]
 gi|302484866|gb|EFL47800.1| DNA repair and recombination protein RadA [Methanothermococcus
           okinawensis IH1]
          Length = 322

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602
           L ++ G+GP     L+++ +     I+ ++   L  IEGIS+K A K
Sbjct: 5   LTDLPGVGPSTAEKLIEAGYIDFMKIATATIGELTDIEGISEKAAAK 51


>gi|288818476|ref|YP_003432824.1| DNA processing protein [Hydrogenobacter thermophilus TK-6]
 gi|288787876|dbj|BAI69623.1| DNA processing protein [Hydrogenobacter thermophilus TK-6]
 gi|308752066|gb|ADO45549.1| DNA protecting protein DprA [Hydrogenobacter thermophilus TK-6]
          Length = 337

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L  + G+G    + L   +    +I  +S E L ++  I ++ A ++  
Sbjct: 10  LKAVKGLGEKSIKKLYAVYKDPSLILEASVEELKAL--IGREKAERLKR 56


>gi|148982028|ref|ZP_01816589.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
 gi|145960667|gb|EDK26012.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
          Length = 670

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F T++++  ++ E L  +  I   +A  I   F +  +  
Sbjct: 521 VGEATAMNLAQHFKTLELVQAATHEQLVEVSDIGDIVASHITAFFSQEKNRA 572


>gi|110802645|ref|YP_699691.1| DNA integrity scanning protein DisA [Clostridium perfringens SM101]
 gi|122956487|sp|Q0SQB6|DISA_CLOPS RecName: Full=DNA integrity scanning protein disA
 gi|110683146|gb|ABG86516.1| helix-hairpin-helix domain protein [Clostridium perfringens SM101]
          Length = 354

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+  FG +K I  +  E L  +EGI +  A  I N   +
Sbjct: 302 IENLVGHFGKLKYILEAGNEELDQVEGIGEARARAIKNGLRR 343


>gi|18311414|ref|NP_563348.1| DNA integrity scanning protein DisA [Clostridium perfringens str.
           13]
 gi|168206826|ref|ZP_02632831.1| helix-hairpin-helix domain protein [Clostridium perfringens E str.
           JGS1987]
 gi|168211246|ref|ZP_02636871.1| helix-hairpin-helix domain protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214721|ref|ZP_02640346.1| helix-hairpin-helix domain protein [Clostridium perfringens CPE
           str. F4969]
 gi|168217925|ref|ZP_02643550.1| helix-hairpin-helix domain protein [Clostridium perfringens NCTC
           8239]
 gi|169344124|ref|ZP_02865107.1| helix-hairpin-helix domain protein [Clostridium perfringens C str.
           JGS1495]
 gi|182626982|ref|ZP_02954712.1| helix-hairpin-helix domain protein [Clostridium perfringens D str.
           JGS1721]
 gi|81766481|sp|Q8XHQ0|DISA_CLOPE RecName: Full=DNA integrity scanning protein disA
 gi|18146098|dbj|BAB82138.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|169297735|gb|EDS79834.1| helix-hairpin-helix domain protein [Clostridium perfringens C str.
           JGS1495]
 gi|170661719|gb|EDT14402.1| helix-hairpin-helix domain protein [Clostridium perfringens E str.
           JGS1987]
 gi|170710789|gb|EDT22971.1| helix-hairpin-helix domain protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713822|gb|EDT26004.1| helix-hairpin-helix domain protein [Clostridium perfringens CPE
           str. F4969]
 gi|177907652|gb|EDT70276.1| helix-hairpin-helix domain protein [Clostridium perfringens D str.
           JGS1721]
 gi|182380023|gb|EDT77502.1| helix-hairpin-helix domain protein [Clostridium perfringens NCTC
           8239]
          Length = 354

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+  FG +K I  +  E L  +EGI +  A  I N   +
Sbjct: 302 IENLVGHFGKLKYILEAGNEELDQVEGIGEARARAIKNGLRR 343


>gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
          Length = 878

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            + GIG      LL+ FG+++ I   S E ++
Sbjct: 193 GVPGIGEKTALKLLKEFGSIENILD-SIEQIS 223


>gi|269986983|gb|EEZ93259.1| SKI2-family helicase [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 143

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           KA   PL  +  IG +R R L  + G  ++K +  +  E L+    + + +A K+Y++ H
Sbjct: 79  KAELIPLVSVPEIGRVRARKLYSA-GIISLKSLKEAGLERLS--PLLGRGVAQKVYSYLH 135

Query: 609 KNTS 612
           KN +
Sbjct: 136 KNEN 139


>gi|225849186|ref|YP_002729350.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
 gi|254781434|sp|C1DW63|DNLJ_SULAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225644062|gb|ACN99112.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 701

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G +  + L  +   ++ +   +   L  +  I  K+A +IYN FH   +
Sbjct: 552 VGEVTAKTLASAVNCLEDLKNFTITDLMKLPDIGDKVATEIYNFFHNEQN 601


>gi|237713195|ref|ZP_04543676.1| DNA ligase [Bacteroides sp. D1]
 gi|262406666|ref|ZP_06083215.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22]
 gi|294643460|ref|ZP_06721274.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a]
 gi|294808131|ref|ZP_06766900.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b]
 gi|229446662|gb|EEO52453.1| DNA ligase [Bacteroides sp. D1]
 gi|262355369|gb|EEZ04460.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22]
 gi|292641208|gb|EFF59412.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a]
 gi|294444674|gb|EFG13372.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b]
          Length = 666

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  +  + ++  E L SI+ I +KIA  I  +F   ++
Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565


>gi|152992587|ref|YP_001358308.1| family X DNA polymerase IV [Sulfurovum sp. NBC37-1]
 gi|151424448|dbj|BAF71951.1| DNA polymerase IV, family X [Sulfurovum sp. NBC37-1]
          Length = 571

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 557 LD--EINGIGPLRKRLLLQSF--GTVKMISRSSPE-TLASIEGISKKIACKIYN 605
           LD  +I GIGP R ++L Q    G+++ + +++    ++ ++G S+K+  KI  
Sbjct: 94  LDILKIEGIGPKRAKILYQELNIGSLEALRKAAEAHKISQLKGFSEKMEQKILK 147


>gi|149024919|ref|ZP_01836320.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
 gi|303259779|ref|ZP_07345754.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
 gi|303262954|ref|ZP_07348889.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
 gi|303264916|ref|ZP_07350832.1| DNA ligase [Streptococcus pneumoniae BS397]
 gi|303266897|ref|ZP_07352775.1| DNA ligase [Streptococcus pneumoniae BS457]
 gi|303268933|ref|ZP_07354718.1| DNA ligase [Streptococcus pneumoniae BS458]
 gi|147929542|gb|EDK80536.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
 gi|301794230|emb|CBW36650.1| DNA ligase [Streptococcus pneumoniae INV104]
 gi|302635931|gb|EFL66431.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
 gi|302638984|gb|EFL69444.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
 gi|302641551|gb|EFL71913.1| DNA ligase [Streptococcus pneumoniae BS458]
 gi|302643595|gb|EFL73864.1| DNA ligase [Streptococcus pneumoniae BS457]
 gi|302645604|gb|EFL75835.1| DNA ligase [Streptococcus pneumoniae BS397]
 gi|332202976|gb|EGJ17044.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47901]
          Length = 652

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ +S++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|148994566|ref|ZP_01823725.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
 gi|168488962|ref|ZP_02713161.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
 gi|147927160|gb|EDK78197.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
 gi|183572496|gb|EDT93024.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
 gi|332073479|gb|EGI83958.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17570]
          Length = 652

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ +S++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|149003762|ref|ZP_01828594.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
 gi|237650785|ref|ZP_04525037.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974]
 gi|237822373|ref|ZP_04598218.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147758208|gb|EDK65210.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
          Length = 652

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ +S++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|16800936|ref|NP_471204.1| NAD-dependent DNA ligase LigA [Listeria innocua Clip11262]
 gi|81526387|sp|Q92AQ0|DNLJ_LISIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|16414371|emb|CAC97100.1| lin1870 [Listeria innocua Clip11262]
          Length = 671

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKIADKETLTSINDIGEKMADSIVTYFANEE 560


>gi|119714733|ref|YP_921698.1| DNA integrity scanning protein DisA [Nocardioides sp. JS614]
 gi|119535394|gb|ABL80011.1| protein of unknown function DUF147 [Nocardioides sp. JS614]
          Length = 360

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 21/45 (46%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            L+  FGT++ +  +  + L ++EG+ +  A  +     +    T
Sbjct: 310 RLVDHFGTLQKLLSAGVDDLQAVEGVGELRARSVREGLSRLAEST 354


>gi|330470472|ref|YP_004408215.1| DNA integrity scanning protein DisA [Verrucosispora maris
           AB-18-032]
 gi|328813443|gb|AEB47615.1| DNA integrity scanning protein DisA [Verrucosispora maris
           AB-18-032]
          Length = 392

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG+++ +  ++ E L ++EG+    A  +    
Sbjct: 342 RLVVHFGSLQRLLGATVEDLQAVEGVGDARARGVREGL 379


>gi|325297787|ref|YP_004257704.1| DNA ligase [Bacteroides salanitronis DSM 18170]
 gi|324317340|gb|ADY35231.1| DNA ligase [Bacteroides salanitronis DSM 18170]
          Length = 667

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 27/50 (54%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + ++F +++ ++ ++ + L  ++ I +KIA  I  +F    +
Sbjct: 515 VGETVAKKVARAFRSIEALATATLDDLIHVDEIGEKIAGSILRYFADEKN 564


>gi|302870287|ref|YP_003838924.1| hypothetical protein Micau_5844 [Micromonospora aurantiaca ATCC
           27029]
 gi|315503437|ref|YP_004082324.1| hypothetical protein ML5_2651 [Micromonospora sp. L5]
 gi|302573146|gb|ADL49348.1| protein of unknown function DUF147 [Micromonospora aurantiaca ATCC
           27029]
 gi|315410056|gb|ADU08173.1| protein of unknown function DUF147 [Micromonospora sp. L5]
          Length = 396

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG+++ +  ++ E L ++EG+    A  +    
Sbjct: 346 RLVVHFGSLQRLLGATVEDLQAVEGVGDARARGVREGL 383


>gi|323490482|ref|ZP_08095689.1| hypothetical protein GPDM_14016 [Planococcus donghaensis MPA1U2]
 gi|323395886|gb|EGA88725.1| hypothetical protein GPDM_14016 [Planococcus donghaensis MPA1U2]
          Length = 569

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 562 GIGPLRKRLLLQSFG--TVKMISRSSP-ETLASIEGISKKIACKIYNHFHK 609
           G+G  +   L +  G  +++ +  +   E +  + G   K   KI    ++
Sbjct: 95  GLGGKKIAKLYKELGIGSMEALKAACLNEEIQKLPGFGPKSEEKILKELNE 145


>gi|300709896|ref|YP_003735710.1| hypothetical protein HacjB3_02625 [Halalkalicoccus jeotgali B3]
 gi|299123579|gb|ADJ13918.1| hypothetical protein HacjB3_02625 [Halalkalicoccus jeotgali B3]
          Length = 171

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
             +EI GIGP     L +  F TV  I+ +S + L +I GI      KI   
Sbjct: 115 EFEEIPGIGPRTASNLRRQGFVTVTSINTASDDVLRAIPGIGPDALAKIRAF 166


>gi|297621995|ref|YP_003710132.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia
           chondrophila WSU 86-1044]
 gi|297377296|gb|ADI39126.1| Holliday junction ATP-dependent DNA helicase ruvA [Waddlia
           chondrophila WSU 86-1044]
          Length = 202

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI 603
           +  +  L  ++GIGP     L+    +V+ +  +        ++ + GI KK A ++
Sbjct: 69  RDLFEELTTVSGIGPKIALALIGHL-SVEEMHAAIGNQEVAMISKVPGIGKKTAQRL 124


>gi|152991030|ref|YP_001356752.1| family X DNA polymerase IV [Nitratiruptor sp. SB155-2]
 gi|151422891|dbj|BAF70395.1| DNA polymerase IV, family X [Nitratiruptor sp. SB155-2]
          Length = 571

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 559 EINGIGPLRKRLLLQ--SFGTVKMISRSSPE-TLASIEGISKKIACKIYN 605
            I G+GP R + L +     +++ + R++    +  + G    +  KI  
Sbjct: 98  SIEGLGPKRIKTLYEKLHIQSMEDLRRAAESGEIEKLPGFGPTLVQKILK 147


>gi|325288902|ref|YP_004265083.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964303|gb|ADY55082.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271]
          Length = 671

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R+L Q +G+++ +  +  + L  +  I   +A  I + F    +
Sbjct: 518 GIRNVGIKAGRVLAQKYGSMEKLQEAGEDELCEVPDIGGIMAASITSFFRDRAN 571


>gi|319939188|ref|ZP_08013551.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
 gi|319811584|gb|EFW07860.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    ++LL+ F  ++ ++++  E +A+++ +   IA  + ++F +  +H
Sbjct: 502 GIRHVGSKASQILLEHFHDLEQLAKAKREEIAALDSLGMVIAESLSSYFAQEGTH 556


>gi|294140434|ref|YP_003556412.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
 gi|293326903|dbj|BAJ01634.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
          Length = 683

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K+  +S       I  +G      L   F ++  +  ++ E    ++ +   +A  + + 
Sbjct: 517 KQTTFSRFLYALGIREVGEATAANLASYFKSLDKLKAANAEEFIKVDDVGIIVAQHLTHF 576

Query: 607 FHKN 610
           F + 
Sbjct: 577 FAQE 580


>gi|299145622|ref|ZP_07038690.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23]
 gi|298516113|gb|EFI39994.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23]
          Length = 666

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  +  + ++  E L SI+ I +KIA  I  +F   ++
Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565


>gi|289423629|ref|ZP_06425429.1| helicase, RecD/TraA family [Peptostreptococcus anaerobius 653-L]
 gi|289155997|gb|EFD04662.1| helicase, RecD/TraA family [Peptostreptococcus anaerobius 653-L]
          Length = 740

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 16/83 (19%)

Query: 543 TTHRKRRKKA-----------AYSPLDE--INGIGPLRKRLLLQSFG--TVKMISRSSPE 587
           T  R+ R  +             S L    I G+G    + ++  FG  ++++I   SPE
Sbjct: 57  TYGRQLRVNSYQLVIPTTVSGILSFLSSGVITGVGQKMAKRIVDKFGVRSLEVIQN-SPE 115

Query: 588 TLASIEGISKKIACKIYNHFHKN 610
            L  IEGI  K    +   + +N
Sbjct: 116 DLLKIEGIGPKKLKPLVESYREN 138


>gi|237717569|ref|ZP_04548050.1| DNA ligase [Bacteroides sp. 2_2_4]
 gi|293371586|ref|ZP_06618001.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f]
 gi|229453155|gb|EEO58946.1| DNA ligase [Bacteroides sp. 2_2_4]
 gi|292633449|gb|EFF52017.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f]
          Length = 666

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  +  + ++  E L SI+ I +KIA  I  +F   ++
Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565


>gi|160884627|ref|ZP_02065630.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483]
 gi|156110366|gb|EDO12111.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483]
          Length = 666

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  +  + ++  E L SI+ I +KIA  I  +F   ++
Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565


>gi|332977432|gb|EGK14208.1| YqxK like protein [Desmospora sp. 8437]
          Length = 402

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PL+ I  +GP   + LL  FGT ++++ R+S   +A + G    +A  I
Sbjct: 320 PLEFIPKLGPKTLQKLLSRFGTEMEILHRASLADIAELAG--ASVATHI 366


>gi|326575817|gb|EGE25740.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis CO72]
          Length = 204

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           R  +  +  L +ING+G      +L +  +V  I  +        L  + GI KK A +I
Sbjct: 66  RHDRDIFRKLIKINGVGAKMALAMLSTL-SVAEIKHAIETDYDAALVRVPGIGKKTAQRI 124

Query: 604 Y 604
            
Sbjct: 125 L 125


>gi|326560238|gb|EGE10626.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 7169]
 gi|326566444|gb|EGE16594.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC1]
          Length = 204

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           R  +  +  L +ING+G      +L +  +V  I  +        L  + GI KK A +I
Sbjct: 66  RHDRDIFRKLIKINGVGAKMALAMLSTL-SVAEIKHAIETDYDAALVRVPGIGKKTAQRI 124

Query: 604 Y 604
            
Sbjct: 125 L 125


>gi|315644109|ref|ZP_07897279.1| Excinuclease ABC C subunit domain protein [Paenibacillus vortex
           V453]
 gi|315280484|gb|EFU43773.1| Excinuclease ABC C subunit domain protein [Paenibacillus vortex
           V453]
          Length = 118

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
           G++   +    +L+VGKA  L+ RIK +   +    +     +++  I   V    V   
Sbjct: 39  GIFMFYNSKEELLFVGKARKLRPRIKKHFEDSVSPIKDHR--NEVTRIEVCVIEDAVHRE 96

Query: 71  LLEANMIKRLKPRFNI 86
           + E  +I  LK  +N+
Sbjct: 97  IYETYIINELKAEYNV 112


>gi|298484007|ref|ZP_07002176.1| DNA ligase, NAD-dependent [Bacteroides sp. D22]
 gi|298269788|gb|EFI11380.1| DNA ligase, NAD-dependent [Bacteroides sp. D22]
          Length = 666

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  +  + ++  E L SI+ I +KIA  I  +F   ++
Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565


>gi|295084199|emb|CBK65722.1| DNA ligase, NAD-dependent [Bacteroides xylanisolvens XB1A]
          Length = 666

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  +  + ++  E L SI+ I +KIA  I  +F   ++
Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565


>gi|153806306|ref|ZP_01958974.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185]
 gi|149130983|gb|EDM22189.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185]
          Length = 666

 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  +  + ++  ETL SI+ I +KIA  I ++F   ++
Sbjct: 516 VGETVAKKIAKSFENIDELQQADLETLISIDEIGEKIAQSILSYFANESN 565


>gi|297183498|gb|ADI19628.1| NAD-dependent DNA ligase (contains brct domain type II) [uncultured
           delta proteobacterium HF0770_45N15]
          Length = 655

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    RLL + FGT++ +     E L +I+ I   IA  + + F
Sbjct: 503 GIPNVGEKTARLLARRFGTLQTLQTVQHEQLLAIDEIGPVIANSVASFF 551


>gi|291530928|emb|CBK96513.1| DNA repair proteins [Eubacterium siraeum 70/3]
          Length = 228

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+  FGT+  +  +S   L  +EG+ +  A  I
Sbjct: 46  RLIDRFGTLSGVFSASENELCEVEGVGRSTAQMI 79


>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
 gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
          Length = 878

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            + GIG      LL+ FG+++ I   S E ++
Sbjct: 193 GVPGIGEKTALKLLKEFGSIENILD-SIEQIS 223


>gi|195657333|gb|ACG48134.1| mating-type switching protein swi10 [Zea mays]
          Length = 396

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++  I   S + LA   GI ++   ++Y+ FH+
Sbjct: 265 FGSLSQIMNGSMDELARCPGIGERKVRRLYDTFHE 299


>gi|167750401|ref|ZP_02422528.1| hypothetical protein EUBSIR_01375 [Eubacterium siraeum DSM 15702]
 gi|167656552|gb|EDS00682.1| hypothetical protein EUBSIR_01375 [Eubacterium siraeum DSM 15702]
          Length = 228

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+  FGT+  +  +S   L  +EG+ +  A  I
Sbjct: 46  RLIDRFGTLSGVFSASENELCEVEGVGRSTAQMI 79


>gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125]
 gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125]
          Length = 876

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ +G+V+ +   S + ++      KK+  ++  H
Sbjct: 191 GVPGIGEKTALKLLKEYGSVEKVLE-SIDEIS-----GKKMKERLEEH 232


>gi|237742800|ref|ZP_04573281.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13]
 gi|229430448|gb|EEO40660.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13]
          Length = 696

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           IG +  + L ++   +  +   S E L SI+GI KK A +I   F K  + 
Sbjct: 541 IGKVASKALAKASKNIDKLMTMSFEELTSIDGIGKKAANEIIAFFTKEKNQ 591


>gi|158338142|ref|YP_001519318.1| RecD/TraA family helicase [Acaryochloris marina MBIC11017]
 gi|158308383|gb|ABW30000.1| helicase, RecD/TraA family [Acaryochloris marina MBIC11017]
          Length = 743

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I G+GP+  + ++  FG  T+ +I     E L  + GI+KK    I
Sbjct: 95  KYLGSGL--IKGVGPVTAKRIVAHFGLETLDIIEN-QIERLVEVPGIAKKRVKLI 146


>gi|326796428|ref|YP_004314248.1| DNA ligase [Marinomonas mediterranea MMB-1]
 gi|326547192|gb|ADZ92412.1| DNA ligase [Marinomonas mediterranea MMB-1]
          Length = 680

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 21/50 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L + +  +  + ++  E+L  +  +   +A  +   F +  +
Sbjct: 526 VGEATAKALTKHYKALDALIQADQESLIQVSDVGPIVAQHVQRFFEQEQN 575


>gi|326391733|ref|ZP_08213256.1| hypothetical protein TheetDRAFT_2497 [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992233|gb|EGD50702.1| hypothetical protein TheetDRAFT_2497 [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 390

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKI 599
           PL+ I  IG      L+  FG+ +  +     E L  + G SK +
Sbjct: 320 PLEFIPNIGGKTIEKLVNYFGSELYALHHVPYEELEKVIGTSKAL 364


>gi|309810827|ref|ZP_07704628.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
 gi|308435133|gb|EFP58964.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
          Length = 359

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG+++ +  +  + L +++G+ +  A  +    
Sbjct: 309 RLVDHFGSLQSLLAADFDDLLTVDGVGESRARAVREGL 346


>gi|317126829|ref|YP_004093111.1| DNA integrity scanning, DisA, linker region [Bacillus
           cellulosilyticus DSM 2522]
 gi|315471777|gb|ADU28380.1| DNA integrity scanning, DisA, linker region [Bacillus
           cellulosilyticus DSM 2522]
          Length = 360

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++I  I PL    L+  F  +  I R++ E L  ++GI +  A KI    
Sbjct: 296 ILNKIPRIPPLVVENLIDKFIELPEIMRANIEELDEVDGIGEARARKIKEGL 347


>gi|260773253|ref|ZP_05882169.1| DNA ligase [Vibrio metschnikovii CIP 69.14]
 gi|260612392|gb|EEX37595.1| DNA ligase [Vibrio metschnikovii CIP 69.14]
          Length = 591

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G      L Q F T++ IS++S E L  ++ +   +A  ++  F +  + 
Sbjct: 442 VGEATAMNLAQHFCTLEAISQASIEQLIGVQDVGMIVASHVHAFFSQEKNQ 492


>gi|260175035|ref|ZP_05761447.1| DNA ligase [Bacteroides sp. D2]
 gi|315923266|ref|ZP_07919506.1| DNA ligase [Bacteroides sp. D2]
 gi|313697141|gb|EFS33976.1| DNA ligase [Bacteroides sp. D2]
          Length = 666

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + + +SF  +  + ++  E L SI+ I +KIA  I  +F   ++
Sbjct: 516 VGETVAKKIAKSFENIDDLQQADLEKLVSIDEIGEKIAQSILAYFANESN 565


>gi|307265143|ref|ZP_07546702.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919765|gb|EFN49980.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 390

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKI 599
           PL+ I  IG      L+  FG+ +  +     E L  + G SK +
Sbjct: 320 PLEFIPNIGGKTIEKLVNYFGSELYALHHVPYEELEKVIGTSKAL 364


>gi|290476106|ref|YP_003469005.1| DNA ligase [Xenorhabdus bovienii SS-2004]
 gi|289175438|emb|CBJ82241.1| DNA ligase [Xenorhabdus bovienii SS-2004]
          Length = 672

 Score = 45.1 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 548 RRKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + KK  ++       I  +G      L+  F T++ +  +  E L +++ +   +A  + 
Sbjct: 502 KSKKTTFARFIYSLGIREVGEATAANLVAHFVTLEKLRAADTEALIAVQDVGGVVASHVV 561

Query: 605 NHFHKNTSHT 614
           N F++  + T
Sbjct: 562 NFFNEPHNQT 571


>gi|312144274|ref|YP_003995720.1| DNA integrity scanning, DisA, linker region [Halanaerobium sp.
           'sapolanicus']
 gi|311904925|gb|ADQ15366.1| DNA integrity scanning, DisA, linker region [Halanaerobium sp.
           'sapolanicus']
          Length = 359

 Score = 45.1 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+  F  ++ I R+S + L  ++GI +  A  I +   +
Sbjct: 307 IENLVDEFKDLQAIIRASADELDDVDGIGEVRAQAIKDGLRR 348


>gi|302392405|ref|YP_003828225.1| DNA protecting protein DprA [Acetohalobium arabaticum DSM 5501]
 gi|302204482|gb|ADL13160.1| DNA protecting protein DprA [Acetohalobium arabaticum DSM 5501]
          Length = 367

 Score = 45.1 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           L  + G+G    + LL  FG  + I ++S + L  +  I  K +  I
Sbjct: 10  LINLQGLGSRIIKNLLDYFGDAESIWKASQKELCKVRLIGTKRSQHI 56


>gi|187734950|ref|YP_001877062.1| DNA protecting protein DprA [Akkermansia muciniphila ATCC BAA-835]
 gi|187425002|gb|ACD04281.1| DNA protecting protein DprA [Akkermansia muciniphila ATCC BAA-835]
          Length = 375

 Score = 45.1 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ I G+GP+R   LLQ F + ++I  S    L  I G+  ++AC+I
Sbjct: 9   ALNLIPGLGPVRIMRLLQVFASPELILESPSSLLMEIPGVGAQLACRI 56


>gi|150015319|ref|YP_001307573.1| RecD/TraA family helicase [Clostridium beijerinckii NCIMB 8052]
 gi|149901784|gb|ABR32617.1| helicase, RecD/TraA family [Clostridium beijerinckii NCIMB 8052]
          Length = 742

 Score = 45.1 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 16/66 (24%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN------------ 605
           I+GIGP+  + +++ FG  T+  I  +  E L  IEGI +K    IY             
Sbjct: 88  IHGIGPVTAKKIIERFGEETLD-IMENHIERLMEIEGIGEKKFQIIYESYIEQQGLKDII 146

Query: 606 -HFHKN 610
            +FHK+
Sbjct: 147 LYFHKH 152


>gi|164514842|emb|CAP47618.1| putative integron gene cassette protein [uncultured bacterium]
          Length = 161

 Score = 45.1 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 10 PGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN--NHTHRITHMISQIN 56
          PGVY      G  LYVG+  +L+ R++ +   +  +++     ++++I 
Sbjct: 41 PGVYLF-SENGSPLYVGRTNSLRSRLQQHCRPSSGHNSAPFAFLLARIA 88


>gi|153003607|ref|YP_001377932.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
 gi|166215389|sp|A7H8A2|DNLJ_ANADF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|152027180|gb|ABS24948.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
          Length = 699

 Score = 45.1 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            I  +G      L + FG +     +S + L ++  +  + A +I   
Sbjct: 548 GIPQVGEATAATLARHFGELARFMDASEDALLAVRDVGPETAREIRAW 595


>gi|147920562|ref|YP_685641.1| DNA repair and recombination protein RadA [uncultured methanogenic
           archaeon RC-I]
 gi|110621037|emb|CAJ36315.1| DNA repair/recombination protein A [uncultured methanogenic
           archaeon RC-I]
          Length = 323

 Score = 45.1 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +++ G+GP     L ++ + +++ I+ +SP  LA+   + +  A KI   
Sbjct: 8   EDLPGVGPATAEKLKEAGYTSIEAIAVASPSELAAAAEVGENTASKIVAA 57


>gi|331235911|ref|XP_003330615.1| excision repair protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309309605|gb|EFP86196.1| excision repair protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 264

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
              S L  I G+       L  +F + + I  +SP  L+   G+ +K   ++   F+ + 
Sbjct: 193 QLTSVLTTIRGLNKTDVMTLATNFRSFRQIVEASPSELSLCPGLGEKKVKRLLEAFNSDF 252

Query: 612 SHTP 615
            + P
Sbjct: 253 RNFP 256


>gi|158312936|ref|YP_001505444.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
 gi|254781334|sp|A8L538|DNLJ_FRASN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158108341|gb|ABW10538.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
          Length = 703

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L +   ++  I+ +  E LA+++G+  KIA  + + F
Sbjct: 534 SIRHVGPTAARGLARELRSLDAIATAPAERLAAVDGVGPKIADAVVDWF 582


>gi|313633203|gb|EFS00081.1| ComE operon protein 1 [Listeria seeligeri FSL N1-067]
          Length = 202

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A+ S L  + GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 146 ASTSDLQTVPGIGESKATAIIEY-REKEGLFQ-TIEDLQNVTGIGEKTIEKLKEYL 199


>gi|332686164|ref|YP_004455938.1| DNA ligase [Melissococcus plutonius ATCC 35311]
 gi|332370173|dbj|BAK21129.1| DNA ligase [Melissococcus plutonius ATCC 35311]
          Length = 678

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 29/51 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    ++L + FG +K +S+++ E++  ++ I + IA  +  +F K
Sbjct: 517 GIRHVGAKAAKILAEHFGDLKTLSQANQESIMVLDSIGEIIAESVVAYFEK 567


>gi|310778043|ref|YP_003966376.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926]
 gi|309747366|gb|ADO82028.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926]
          Length = 677

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 547 KRRK--KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+R+  K+ YS    I  +G     LL +    +  +++ S E L  I+G+ KK+A  +Y
Sbjct: 508 KKREYPKSLYS--LGIPHVGKFLASLLAKESKNIDKLAQMSIEDLLEIDGVGKKVAESVY 565

Query: 605 NHFHK 609
             F  
Sbjct: 566 GVFRN 570


>gi|182677699|ref|YP_001831845.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|254781257|sp|B2IGH4|DNLJ_BEII9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|182633582|gb|ACB94356.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 699

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 13/62 (20%)

Query: 559 EINGIGP--LRKRLLLQSFGTVKMISR-SSPET--------LASIEGISKKIACKIYNHF 607
            I  +G    R+    ++FGT   +   +S           L ++EG    +A  I++ F
Sbjct: 539 GIRHVGETNARRAA--RAFGTFDALRAVASRAEEGSEERSELTNVEGFGPVVAEAIFDFF 596

Query: 608 HK 609
           H+
Sbjct: 597 HE 598


>gi|332200505|gb|EGJ14577.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41317]
          Length = 648

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ +S++  E +ASIE +   IA  +  +F    S 
Sbjct: 498 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 552


>gi|270262950|ref|ZP_06191221.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
 gi|270043634|gb|EFA16727.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
          Length = 673

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 6/48 (12%), Positives = 18/48 (37%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   FG +  +  +  + L  +  + + +A  + +   + 
Sbjct: 520 VGEATAANLAAHFGELPKLYAADIDALKQVPDVGEVVAKHVRHFLDEE 567


>gi|311233982|gb|ADP86836.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris RCH1]
          Length = 818

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R L  +F  +  +  +  ETL  +  I  ++A  I + F    +
Sbjct: 572 GIRHVGEQTARTLAANFTDLDALREADAETLQQLPDIGPEVAGSIRSFFANEGN 625


>gi|183603490|ref|ZP_02717204.2| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
 gi|183576581|gb|EDT97109.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
          Length = 648

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ +S++  E +ASIE +   IA  +  +F    S 
Sbjct: 498 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 552


>gi|168486469|ref|ZP_02710977.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
 gi|183570508|gb|EDT91036.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ +S++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|168483195|ref|ZP_02708147.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
 gi|168492012|ref|ZP_02716155.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
 gi|221231854|ref|YP_002511006.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225854613|ref|YP_002736125.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae JJA]
 gi|254781427|sp|B8ZPV9|DNLJ_STRPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781431|sp|C1CEA4|DNLJ_STRZJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|172043461|gb|EDT51507.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
 gi|183573785|gb|EDT94313.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
 gi|220674314|emb|CAR68857.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225722247|gb|ACO18100.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae JJA]
 gi|332201605|gb|EGJ15675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47368]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ +S++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|168215804|ref|ZP_02641429.1| helicase, RecD/TraA family [Clostridium perfringens NCTC 8239]
 gi|182382061|gb|EDT79540.1| helicase, RecD/TraA family [Clostridium perfringens NCTC 8239]
          Length = 744

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I GIGP+  + ++  FG  T+  I  ++ E L  IEGI KK    I   + +
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138


>gi|169344241|ref|ZP_02865223.1| helicase, RecD/TraA family [Clostridium perfringens C str. JGS1495]
 gi|169297700|gb|EDS79800.1| helicase, RecD/TraA family [Clostridium perfringens C str. JGS1495]
          Length = 744

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I GIGP+  + ++  FG  T+  I  ++ E L  IEGI KK    I   + +
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138


>gi|149012887|ref|ZP_01833800.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182684133|ref|YP_001835880.1| DNA ligase [Streptococcus pneumoniae CGSP14]
 gi|254781428|sp|B2IPZ1|DNLJ_STRPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147763176|gb|EDK70116.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182629467|gb|ACB90415.1| DNA ligase [Streptococcus pneumoniae CGSP14]
 gi|301801994|emb|CBW34723.1| DNA ligase [Streptococcus pneumoniae INV200]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ +S++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|111658008|ref|ZP_01408712.1| hypothetical protein SpneT_02000805 [Streptococcus pneumoniae
           TIGR4]
          Length = 648

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ +S++  E +ASIE +   IA  +  +F    S 
Sbjct: 498 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 552


>gi|46580019|ref|YP_010827.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81404693|sp|Q72BM7|DNLJ_DESVH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46449435|gb|AAS96086.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 799

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R L  +F  +  +  +  ETL  +  I  ++A  I + F    +
Sbjct: 553 GIRHVGEQTARTLAANFTDLDALREADAETLQQLPDIGPEVAGSIRSFFANEGN 606


>gi|15900984|ref|NP_345588.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae TIGR4]
 gi|81531953|sp|Q97QT2|DNLJ_STRPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|14972593|gb|AAK75228.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae TIGR4]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ +S++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|326562883|gb|EGE13170.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 46P47B1]
 gi|326563676|gb|EGE13928.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis
           103P14B1]
 gi|326565244|gb|EGE15429.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis 12P80B1]
 gi|326570251|gb|EGE20296.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC8]
 gi|326570988|gb|EGE21012.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis BC7]
 gi|326573284|gb|EGE23252.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis
           101P30B1]
 gi|326576898|gb|EGE26804.1| Holliday junction DNA helicase RuvA [Moraxella catarrhalis O35E]
          Length = 204

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           R  +  +  L +ING+G      +L +  +V  I  +        L  + GI KK A +I
Sbjct: 66  RHDRDIFRKLIKINGVGAKMALAMLSTL-SVAEIKHAIETDYDAALVRVPGIGKKTAQRI 124

Query: 604 Y 604
            
Sbjct: 125 L 125


>gi|325278944|ref|YP_004251486.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
 gi|324310753|gb|ADY31306.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
          Length = 829

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           IG    R L +SF  +  +  +  E L  +E I +++A  I  +F K  +
Sbjct: 683 IGETASRNLAKSFRELTRLMEADFEQLTEVEDIGEQMANSILRYFGKEEN 732



 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I GI   +  LL   F  +  +S +S   + ++EGI    A  I   F  N 
Sbjct: 585 NIPGINWHKADLLAARFDYIYELSVASAAEIRAVEGIDADEADSIVRFFRSNE 637



 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  I       L   FG+++  + +S + L+++ G  +    +I ++F 
Sbjct: 508 GIKNISSRNAETLAGHFGSLEAYAAASKQELSAVIG-DETTVNRILDYFR 556


>gi|307067701|ref|YP_003876667.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pneumoniae AP200]
 gi|306409238|gb|ADM84665.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pneumoniae AP200]
          Length = 648

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ + ++  E +ASIE +   IA  +  +F    S 
Sbjct: 498 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFATEGSE 552


>gi|225858927|ref|YP_002740437.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae 70585]
 gi|254781425|sp|C1C7B1|DNLJ_STRP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225720821|gb|ACO16675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 70585]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ + ++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|164686584|ref|ZP_02210612.1| hypothetical protein CLOBAR_00176 [Clostridium bartlettii DSM
           16795]
 gi|164604313|gb|EDQ97778.1| hypothetical protein CLOBAR_00176 [Clostridium bartlettii DSM
           16795]
          Length = 355

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L+  FG  + I  +S E L  +EGI +  A  I N  
Sbjct: 304 IENLVNYFGNFQEILHASIEELDEVEGIGEIRATYIRNGL 343


>gi|148986045|ref|ZP_01819066.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
 gi|147921879|gb|EDK73005.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
 gi|301800082|emb|CBW32679.1| DNA ligase [Streptococcus pneumoniae OXC141]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ + ++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|149006206|ref|ZP_01829918.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
 gi|225856757|ref|YP_002738268.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae P1031]
 gi|307127352|ref|YP_003879383.1| NAD-dependent DNA ligase [Streptococcus pneumoniae 670-6B]
 gi|254781432|sp|C1CKI0|DNLJ_STRZP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147761983|gb|EDK68945.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
 gi|225725530|gb|ACO21382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae P1031]
 gi|306484414|gb|ADM91283.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 670-6B]
 gi|332075451|gb|EGI85920.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41301]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ + ++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|148998387|ref|ZP_01825829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
 gi|168576158|ref|ZP_02722052.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
 gi|194398076|ref|YP_002037745.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae G54]
 gi|225861080|ref|YP_002742589.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230922|ref|ZP_06964603.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254162|ref|ZP_06977748.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502866|ref|YP_003724806.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
 gi|254781424|sp|B5E4M9|DNLJ_STRP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781433|sp|C1CRL7|DNLJ_STRZT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|147755784|gb|EDK62829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
 gi|183577935|gb|EDT98463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
 gi|194357743|gb|ACF56191.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae G54]
 gi|225727034|gb|ACO22885.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238461|gb|ADI69592.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
 gi|327389325|gb|EGE87670.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA04375]
 gi|332075071|gb|EGI85542.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17545]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F +++ + ++  E +ASIE +   IA  +  +F    S 
Sbjct: 502 GIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGGVIAKSLQTYFATEGSE 556


>gi|313637785|gb|EFS03136.1| ComE operon protein 1 [Listeria seeligeri FSL S4-171]
          Length = 201

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A+ S L  + GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 145 ASTSDLQTVPGIGESKATAIIEY-REKEGLFQ-TIEDLQNVTGIGEKTIEKLKEYL 198


>gi|261366044|ref|ZP_05978927.1| competence protein comEA [Neisseria mucosa ATCC 25996]
 gi|288565355|gb|EFC86915.1| competence protein comEA [Neisseria mucosa ATCC 25996]
          Length = 105

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 18/67 (26%)

Query: 555 SPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           S L+ + GIGP + + +         F +V        E L +++GI       I++   
Sbjct: 35  SELEALPGIGPAKAKAIADYRQQHGAFKSV--------EELKNVKGIG----EGIFSKLK 82

Query: 609 KNTSHTP 615
              +  P
Sbjct: 83  AEATVAP 89


>gi|261365360|ref|ZP_05978243.1| competence protein comEA [Neisseria mucosa ATCC 25996]
 gi|288566145|gb|EFC87705.1| competence protein comEA [Neisseria mucosa ATCC 25996]
          Length = 96

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 18/67 (26%)

Query: 555 SPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           S L+ + GIGP + + +         F +V        E L +++GI       I++   
Sbjct: 29  SELEALPGIGPAKAKAIADYRQQHGAFKSV--------EELKNVKGIG----EGIFSKLK 76

Query: 609 KNTSHTP 615
              +  P
Sbjct: 77  AEATVAP 83


>gi|269121064|ref|YP_003309241.1| hypothetical protein Sterm_2457 [Sebaldella termitidis ATCC 33386]
 gi|268614942|gb|ACZ09310.1| protein of unknown function DUF147 [Sebaldella termitidis ATCC
           33386]
          Length = 351

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L EI  I      LL+++F  +  I  ++ E +A I+GISK  A  I     +
Sbjct: 289 ILSEIKRITKKDIELLIKAFNDLPEILDATSEDIAKIKGISKFKASSIVRGLKR 342


>gi|261365906|ref|ZP_05978789.1| competence protein comEA [Neisseria mucosa ATCC 25996]
 gi|261366047|ref|ZP_05978930.1| competence protein comEA [Neisseria mucosa ATCC 25996]
 gi|261366054|ref|ZP_05978937.1| competence protein comEA [Neisseria mucosa ATCC 25996]
 gi|261366066|ref|ZP_05978949.1| competence protein comEA [Neisseria mucosa ATCC 25996]
 gi|288565329|gb|EFC86889.1| competence protein comEA [Neisseria mucosa ATCC 25996]
 gi|288565337|gb|EFC86897.1| competence protein comEA [Neisseria mucosa ATCC 25996]
 gi|288565353|gb|EFC86913.1| competence protein comEA [Neisseria mucosa ATCC 25996]
 gi|288565518|gb|EFC87078.1| competence protein comEA [Neisseria mucosa ATCC 25996]
          Length = 99

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 18/67 (26%)

Query: 555 SPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           S L+ + GIGP + + +         F +V        E L +++GI       I++   
Sbjct: 29  SELEALPGIGPAKAKAIADYRQQHGAFKSV--------EELKNVKGIG----EGIFSKLK 76

Query: 609 KNTSHTP 615
              +  P
Sbjct: 77  AEATVAP 83


>gi|310642634|ref|YP_003947392.1| hypothetical yqxk protein [Paenibacillus polymyxa SC2]
 gi|309247584|gb|ADO57151.1| Hypothetical yqxK protein [Paenibacillus polymyxa SC2]
          Length = 398

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603
           PL+ I G+G  +   LL +FGT   I    + E L+ + G  K +A +I
Sbjct: 328 PLEFIPGLGKAKLNQLLAAFGTEMNILHEVTQEELSEVVG--KVLAEQI 374


>gi|294496956|ref|YP_003560656.1| DNA integrity scanning protein DisA [Bacillus megaterium QM B1551]
 gi|295702323|ref|YP_003595398.1| DNA integrity scanning protein DisA [Bacillus megaterium DSM 319]
 gi|294346893|gb|ADE67222.1| DNA integrity scanning protein DisA [Bacillus megaterium QM B1551]
 gi|294799982|gb|ADF37048.1| DNA integrity scanning protein DisA [Bacillus megaterium DSM 319]
          Length = 359

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+   G +K I+ +S E L  +EGI +  A KI     +
Sbjct: 307 IENLIDELGDLKTIADASVEELDEVEGIGEIRARKIREGLKR 348


>gi|224370717|ref|YP_002604881.1| RadC3 [Desulfobacterium autotrophicum HRM2]
 gi|223693434|gb|ACN16717.1| RadC3 [Desulfobacterium autotrophicum HRM2]
          Length = 279

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598
           + LL  F T++ +  +S E L  + G+   
Sbjct: 91  KALLDRFKTLQGVFEASVEELCRVNGVGPS 120


>gi|254829489|ref|ZP_05234176.1| DNA ligase [Listeria monocytogenes FSL N3-165]
 gi|258601904|gb|EEW15229.1| DNA ligase [Listeria monocytogenes FSL N3-165]
          Length = 671

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL +I  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTNINDIGEKMADSIVTYFANEE 560


>gi|168205588|ref|ZP_02631593.1| helicase, RecD/TraA family [Clostridium perfringens E str. JGS1987]
 gi|170662877|gb|EDT15560.1| helicase, RecD/TraA family [Clostridium perfringens E str. JGS1987]
          Length = 744

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I GIGP+  + ++  FG  T+  I  ++ E L  IEGI KK    I   + +
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138


>gi|18311157|ref|NP_563091.1| helicase, RecD/TraA family [Clostridium perfringens str. 13]
 gi|168213721|ref|ZP_02639346.1| helicase, RecD/TraA family [Clostridium perfringens CPE str. F4969]
 gi|182623921|ref|ZP_02951709.1| helicase, RecD/TraA family [Clostridium perfringens D str. JGS1721]
 gi|18145840|dbj|BAB81881.1| exodeoxyribonuclease V alpha subunit [Clostridium perfringens str.
           13]
 gi|170714837|gb|EDT27019.1| helicase, RecD/TraA family [Clostridium perfringens CPE str. F4969]
 gi|177910814|gb|EDT73168.1| helicase, RecD/TraA family [Clostridium perfringens D str. JGS1721]
          Length = 744

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I GIGP+  + ++  FG  T+  I  ++ E L  IEGI KK    I   + +
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138


>gi|332366022|gb|EGJ43778.1| competence protein [Streptococcus sanguinis SK1059]
          Length = 243

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++      G+ K     S + L  + GI  K   K+  +
Sbjct: 187 ATEAELQTISGIGQKRASDIIAYRESNGSFK-----SVDDLKKVSGIGDKTLEKLKEY 239


>gi|296133173|ref|YP_003640420.1| hypothetical protein TherJR_1670 [Thermincola sp. JR]
 gi|296031751|gb|ADG82519.1| conserved hypothetical protein [Thermincola potens JR]
          Length = 396

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIA 600
           PL  + G+G      LLQ FGT ++++  +S E L  + G  KKIA
Sbjct: 324 PLSFVPGVGRKTVDKLLQCFGTEMEILHSASEEDLEKVAG--KKIA 367


>gi|268593162|ref|ZP_06127383.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
 gi|291311208|gb|EFE51661.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
          Length = 671

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  +G      L   + T++ +  +  E+L +++ I   +A  + 
Sbjct: 501 KSKQTTLARFIYALGIREVGEATAANLAAHYTTLEAVMTADEESLKTVQDIGHVVAKHVV 560

Query: 605 NHFHK 609
           N F +
Sbjct: 561 NFFRE 565


>gi|205374269|ref|ZP_03227068.1| ComE operon protein 1 [Bacillus coahuilensis m4-4]
          Length = 199

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L+ + GIGP +   ++           SS E + ++ GI  K    + ++ 
Sbjct: 144 ATKEELETLPGIGPAKAEAIITY---RDETLFSSIEEIENVPGIGTKTFESLKDYI 196


>gi|194219216|ref|XP_001490470.2| PREDICTED: excision repair cross-complementing rodent repair
           deficiency, complementation group 4 isoform 2 [Equus
           caballus]
          Length = 1008

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+    T+  ++  S + LA + G +   A ++Y+  H + + 
Sbjct: 944 LLKMPGVNAKNCRSLMNHVKTIAELASLSQDQLAGVLG-NAANAKQLYDFIHTSYAE 999


>gi|110800894|ref|YP_696854.1| RecD/TraA family helicase [Clostridium perfringens ATCC 13124]
 gi|168210105|ref|ZP_02635730.1| helicase, RecD/TraA family [Clostridium perfringens B str. ATCC
           3626]
 gi|110675541|gb|ABG84528.1| helicase, RecD/TraA family [Clostridium perfringens ATCC 13124]
 gi|170711774|gb|EDT23956.1| helicase, RecD/TraA family [Clostridium perfringens B str. ATCC
           3626]
          Length = 744

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I GIGP+  + ++  FG  T+  I  ++ E L  IEGI KK    I   + +
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138


>gi|125972876|ref|YP_001036786.1| hypothetical protein Cthe_0355 [Clostridium thermocellum ATCC
           27405]
 gi|256005745|ref|ZP_05430700.1| conserved hypothetical protein [Clostridium thermocellum DSM 2360]
 gi|281417075|ref|ZP_06248095.1| conserved hypothetical protein [Clostridium thermocellum JW20]
 gi|125713101|gb|ABN51593.1| conserved hypothetical protein [Clostridium thermocellum ATCC
           27405]
 gi|255990318|gb|EEU00445.1| conserved hypothetical protein [Clostridium thermocellum DSM 2360]
 gi|281408477|gb|EFB38735.1| conserved hypothetical protein [Clostridium thermocellum JW20]
 gi|316940887|gb|ADU74921.1| hypothetical protein Clo1313_1869 [Clostridium thermocellum DSM
           1313]
          Length = 392

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PL+ +  +GP     L++ FG+ ++++  +S E L  +  +S+ IA  I
Sbjct: 323 PLEFLPKVGPKTIDKLIEFFGSEMRVLHYASYEELTKV--VSEDIAKNI 369


>gi|325981324|ref|YP_004293726.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Nitrosomonas sp. AL212]
 gi|325530843|gb|ADZ25564.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Nitrosomonas sp. AL212]
          Length = 95

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 17/69 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF-- 607
            L+ + GIGP + + +++       F        +S + LA + GI +    ++ +    
Sbjct: 31  ELESLQGIGPAKAKAIIEHREKSGTF--------ASVDDLAKVSGIGQGTIKQLRDVITV 82

Query: 608 -HKNTSHTP 615
             +     P
Sbjct: 83  EGEKAPEAP 91


>gi|239827887|ref|YP_002950511.1| DNA repair protein RadC [Geobacillus sp. WCH70]
 gi|259551864|sp|C5D5H7|Y2550_GEOSW RecName: Full=UPF0758 protein GWCH70_2550
 gi|239808180|gb|ACS25245.1| DNA repair protein RadC [Geobacillus sp. WCH70]
          Length = 226

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LL+ F  ++++  ++ E + SI+GI    A +I    
Sbjct: 51  RLLKHFEGLRLLKDATIEEITSIKGIGTTKAVQILAAI 88


>gi|254832503|ref|ZP_05237158.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 10403S]
          Length = 671

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL +I  I +K+A  I  +F    
Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKVADKETLTNINDIGEKMADSIVTYFANEE 560


>gi|110803510|ref|YP_699450.1| RecD/TraA family helicase [Clostridium perfringens SM101]
 gi|110684011|gb|ABG87381.1| helicase, RecD/TraA family [Clostridium perfringens SM101]
          Length = 744

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I GIGP+  + ++  FG  T+  I  ++ E L  IEGI KK    I   + +
Sbjct: 88  IQGIGPVTAKKIVNKFGEDTL-NILDNNIERLKEIEGIGKKKLETIIESYRE 138


>gi|134300388|ref|YP_001113884.1| DNA repair protein RadC [Desulfotomaculum reducens MI-1]
 gi|172044335|sp|A4J7K6|Y2549_DESRM RecName: Full=UPF0758 protein Dred_2549
 gi|134053088|gb|ABO51059.1| DNA replication and repair protein RadC [Desulfotomaculum reducens
           MI-1]
          Length = 227

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L   F  ++ +S+++ E L+ I+G+    A ++    
Sbjct: 53  LFSHFKDLRALSQATIEELSQIKGVGPVKAVQVKAAL 89


>gi|317133714|ref|YP_004090318.1| Excinuclease ABC C subunit domain protein [Ruminococcus albus 7]
 gi|315450872|gb|ADU24432.1| Excinuclease ABC C subunit domain protein [Ruminococcus albus 7]
          Length = 137

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEV 67
             P +Y   +    V+YVG   N+  R+  ++  +           +++ I    T   +
Sbjct: 35  RSPYIYLFYNNNNIVIYVGHTQNIANRMSKHIEESPFW-------EEVSYIMCAETPN-L 86

Query: 68  EALL-LEANMIKRLKPRFNILLRDDKSFPYI 97
            +L   E   I++ KP++N   R  K  PY+
Sbjct: 87  NSLADYERYYIQKYKPKYNK--RGFKKPPYL 115


>gi|296113247|ref|YP_003627185.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4]
 gi|295920941|gb|ADG61292.1| holliday junction DNA helicase RuvA [Moraxella catarrhalis RH4]
          Length = 204

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           R  +  +  L +ING+G      +L +  +V  I  +        L  + GI KK A +I
Sbjct: 66  RHDRDIFRKLIKINGVGAKMALAMLSTL-SVAEIKHAIETDYDAALVRVPGIGKKTAQRI 124

Query: 604 Y 604
            
Sbjct: 125 L 125


>gi|15807063|ref|NP_295792.1| DNA ligase [Deinococcus radiodurans R1]
 gi|81550876|sp|Q9RSQ5|DNLJ_DEIRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|6459863|gb|AAF11619.1|AE002043_4 DNA ligase [Deinococcus radiodurans R1]
          Length = 700

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L ++FGT++ +  ++PE + ++ G+   IA  +    
Sbjct: 529 VGQRNAQALARAFGTLEGLLAATPEQIEAVPGLGGIIAQSVTASL 573


>gi|26553637|ref|NP_757571.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2]
 gi|81748016|sp|Q8EWL9|DNLJ_MYCPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|26453643|dbj|BAC43975.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2]
          Length = 701

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K +  +    L    I  +G    + L + F +++ ++ ++ E +  +    +K++  + 
Sbjct: 532 KSKSNSMEKFLTGLGIKYVGLRAAKALSKRFKSIEELAMATREEIEQVPDTGEKMSESLV 591

Query: 605 NHF 607
           N F
Sbjct: 592 NWF 594


>gi|326776069|ref|ZP_08235334.1| Restriction endonuclease, type II, Eco29kI [Streptomyces cf.
           griseus XylebKG-1]
 gi|326656402|gb|EGE41248.1| Restriction endonuclease, type II, Eco29kI [Streptomyces cf.
           griseus XylebKG-1]
          Length = 278

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 8   ECPGVYQMLDIAGRVLYVGKA----YNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV- 62
           E PGVYQ+    G ++YVGKA      L  R+++++   +    I        +I F   
Sbjct: 49  ERPGVYQLY-HKGALVYVGKADRRHKGLPGRLRNHLRKLSGRRNIHP-----ADISFRCL 102

Query: 63  -TCTEVEALLLEANMIKRLK 81
               +  AL  E  +I   +
Sbjct: 103 YVDEDFSALAPEQLLINHHR 122


>gi|320354711|ref|YP_004196050.1| NAD-dependent DNA ligase [Desulfobulbus propionicus DSM 2032]
 gi|320123213|gb|ADW18759.1| DNA ligase, NAD-dependent [Desulfobulbus propionicus DSM 2032]
          Length = 670

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 17/75 (22%)

Query: 551 KAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           K+A + L+ I               GI   G +   +L + F  ++ +  +  E L  +E
Sbjct: 494 KSARNILEAIEQRRSLPLAQFIAALGIRHVGEVTASVLAEHFRELRELMAAKKEALLRVE 553

Query: 594 GISKKIACKIYNHFH 608
           GI ++ A  +  +F 
Sbjct: 554 GIGEQTADSVIEYFQ 568


>gi|167771605|ref|ZP_02443658.1| hypothetical protein ANACOL_02977 [Anaerotruncus colihominis DSM
           17241]
 gi|167666245|gb|EDS10375.1| hypothetical protein ANACOL_02977 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
            L+  FG++  +  ++ + L ++EGI +  A  + 
Sbjct: 49  RLIARFGSLDAVFDAAFDELCAVEGIGRNTATLLK 83


>gi|157693205|ref|YP_001487667.1| DNA repair protein RadC [Bacillus pumilus SAFR-032]
 gi|157681963|gb|ABV63107.1| DNA repair protein RadC [Bacillus pumilus SAFR-032]
          Length = 232

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LLQ+FG ++ +  ++ E ++ I G+ K  A  +    
Sbjct: 57  RLLQTFGGLRSVREATIEEMSKIRGVGKAKAISLLAAL 94


>gi|85057601|ref|YP_456517.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123725342|sp|Q2NJF5|DNLJ_AYWBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84789706|gb|ABC65438.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 671

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 30/155 (19%)

Query: 476 LSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFI---QR 532
                   ++  ++  I  +S         G +       + L+    D  LY +   Q 
Sbjct: 419 YFCLNPNCREQKIQKLIHFVSKNAMDINVLGEQTIITFFDKNLITKPSD--LYLLKNHQH 476

Query: 533 LRDEAHRFAITTHRKRRKKAAYSPLD-----------------EINGIGPLRKRLLLQSF 575
           +  E     I+       K   + LD                  I  IG    ++L + F
Sbjct: 477 ILQE-----ISGF---GAKKITNILDAIEASKQKGFEDVLFALGIKHIGKKVSQVLAKYF 528

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            T++ + +S+ +T+  I  I  KIA  I  +F  +
Sbjct: 529 QTIENLQQSTSDTITQIREIGIKIAQSIQQYFSNS 563


>gi|23098215|ref|NP_691681.1| NAD-dependent DNA ligase LigA [Oceanobacillus iheyensis HTE831]
 gi|81741485|sp|Q8CXK6|DNLJ_OCEIH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|22776440|dbj|BAC12716.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Oceanobacillus
           iheyensis HTE831]
          Length = 667

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L+       I  IG    + L   F T++ + +++ E + +I+ I  K+A  I 
Sbjct: 497 KSKENSLERLLFGLGIRFIGSKAAKTLAMEFETMENLQKATYEDVLAIDEIGDKMADSIV 556

Query: 605 NHFHKN 610
            +F + 
Sbjct: 557 QYFAEE 562


>gi|332982281|ref|YP_004463722.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
 gi|332699959|gb|AEE96900.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
          Length = 665

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G     +L + FG +  + ++    L +I  I  KIA  +   F +  +
Sbjct: 512 GIPLVGTRAASILAERFGDIYELMKADQAQLTAIPEIGPKIAESVVTFFKQEQT 565


>gi|330833876|ref|YP_004408604.1| DNA repair and recombination protein RadA [Metallosphaera cuprina
           Ar-4]
 gi|329566015|gb|AEB94120.1| DNA repair and recombination protein RadA [Metallosphaera cuprina
           Ar-4]
          Length = 324

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 13/62 (20%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIAC 601
           K+R K+      +++G+G    + +L       + +++ I+ +SP+ L+++ GI    A 
Sbjct: 8   KKRIKSVK----DLSGVG----QAVLNKLNESGYSSLESIAVASPQDLSTVAGIPLATAQ 59

Query: 602 KI 603
           +I
Sbjct: 60  RI 61


>gi|319946751|ref|ZP_08020985.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
 gi|319746799|gb|EFV99058.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    +LLLQ F ++  ++ +  E +A+I+ +   +A  +  +F +  S 
Sbjct: 502 GIRHVGSKASQLLLQEFHSIPALAEAEVERIAAIDSLGMVVAESLKRYFAQEGSQ 556


>gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
 gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 14/60 (23%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D I G   IGP R   LLQ +G+++ I       L  I G       KI  +  +     
Sbjct: 196 DNIPGVKGIGPKRAAELLQRYGSLEEI----FNHLGEIPG-------KIQQYLREGIPAA 244


>gi|312143465|ref|YP_003994911.1| DNA repair protein RadC [Halanaerobium sp. 'sapolanicus']
 gi|311904116|gb|ADQ14557.1| DNA repair protein RadC [Halanaerobium sp. 'sapolanicus']
          Length = 231

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + LL SFG ++ I   S E L  ++GI    A +I
Sbjct: 55  QDLLNSFGGLREILDLSCEELQEVKGIGLAKAAQI 89


>gi|284047985|ref|YP_003398324.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
 gi|283952206|gb|ADB47009.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
          Length = 675

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      L + +GT+  +  +  E LA    I   IA  +   F
Sbjct: 521 GIRHVGAKVAHTLARKYGTMDKLMAADQEDLAQTPDIGPVIAESVVTWF 569


>gi|218885555|ref|YP_002434876.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|254781315|sp|B8DJT6|DNLJ_DESVM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218756509|gb|ACL07408.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 808

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    R L   F  +  +  +  ETL  +  I  ++A  I   F    +  
Sbjct: 561 GIRHVGEQTARTLAAHFADLDALGAAQAETLQQLPDIGPEVAASIRAFFANEGNRA 616


>gi|188586289|ref|YP_001917834.1| conserved hypothetical protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350976|gb|ACB85246.1| conserved hypothetical protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 397

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 545 HRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603
           H+K+       PL+++ GIG    + L++  G  +K+I  S+   L  +  +S +I  KI
Sbjct: 317 HKKQGNYTYQVPLEDVPGIGNKTYKKLIRQLGPEIKIIHDSTESELGQV--VSARIIKKI 374

Query: 604 YNHFHKNTSHTP 615
           +   + N S TP
Sbjct: 375 FQIRNGNISLTP 386


>gi|89100805|ref|ZP_01173657.1| ComEA [Bacillus sp. NRRL B-14911]
 gi|89084451|gb|EAR63600.1| ComEA [Bacillus sp. NRRL B-14911]
          Length = 136

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 14/59 (23%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L +I GIGP +   +++       F ++        E L  I GI +K   K+ ++  
Sbjct: 84  ELQDIPGIGPSKAAAIIEYRETEGPFQSL--------EDLMQISGIGEKTFEKLKSYIK 134


>gi|300813436|ref|ZP_07093781.1| comEA protein [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512453|gb|EFK39608.1| comEA protein [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 204

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A+   L +I G+G      ++      +     S E L +++GI  K   K+ ++ 
Sbjct: 149 ASKDELMKIPGVGSKTADKIIDY---REKFQFKSVEDLKNVDGIGDKKFEKLKDYL 201


>gi|323703789|ref|ZP_08115427.1| DNA integrity scanning, DisA, linker region [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531258|gb|EGB21159.1| DNA integrity scanning, DisA, linker region [Desulfotomaculum
           nigrificans DSM 574]
          Length = 361

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L+ +FG ++ I  +S + L  +EGI +  A  I    
Sbjct: 307 IENLVATFGDLRTILAASIQELDEVEGIGEARARSIKEGL 346


>gi|76801091|ref|YP_326099.1| DNA repair and recombination protein RadA [Natronomonas pharaonis
           DSM 2160]
 gi|76556956|emb|CAI48530.1| DNA repair and recombination protein [Natronomonas pharaonis DSM
           2160]
          Length = 345

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           A  + L+E+ G+GP     L ++ + + + I+ +SP  L++   I +  A  I     + 
Sbjct: 3   ATTADLEELPGVGPATADKLRENGYDSYQSIAVASPAELSNTADIGESNANDIIQAAREA 62

Query: 611 TS 612
             
Sbjct: 63  AD 64


>gi|172046060|sp|A8FFU0|Y2444_BACP2 RecName: Full=UPF0758 protein BPUM_2444
          Length = 224

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LLQ+FG ++ +  ++ E ++ I G+ K  A  +    
Sbjct: 49  RLLQTFGGLRSVREATIEEMSKIRGVGKAKAISLLAAL 86


>gi|150401406|ref|YP_001325172.1| DNA repair and recombination protein RadA [Methanococcus aeolicus
           Nankai-3]
 gi|150014109|gb|ABR56560.1| DNA repair and recombination protein RadA [Methanococcus aeolicus
           Nankai-3]
          Length = 322

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 557 LDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACK 602
           L ++ G+GP     L++  G       I+ ++   L  IEGIS+K A K
Sbjct: 5   LTDLPGVGPSTAEKLIE--GGYIDFMKIATATIGELVDIEGISEKAAAK 51


>gi|323705317|ref|ZP_08116892.1| hypothetical protein ThexyDRAFT_1184 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535219|gb|EGB24995.1| hypothetical protein ThexyDRAFT_1184 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 388

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS---RSSPETLASIEGISKKIACKIYNH 606
           PL+ + GIGP   R L++  G+   I     +  E L +   + +KIA  I + 
Sbjct: 320 PLEFLPGIGPKTIRKLMREVGS--EIYVTHEAPFEQLKN--SVGEKIAKNILDA 369


>gi|282896837|ref|ZP_06304843.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
 gi|281198246|gb|EFA73136.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
          Length = 692

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G +  +LL + F TV  ++ +    +  + GI  +IA  +Y  FH + + 
Sbjct: 528 GIRHVGNVNAQLLSEKFTTVDKLATAKQSDIEGVYGIGVEIAQSVYQWFHISANQ 582



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +I GIG      L    L    +V  +   + E L  +E + K+ A K+     ++ +  
Sbjct: 462 DIKGIGEKLVHQLVDKGLVH--SVADLYSLTEEQLCGLERMGKRSAEKLVQVIRESKNQP 519


>gi|256393553|ref|YP_003115117.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256359779|gb|ACU73276.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
          Length = 579

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISR-SSPETLASIEGISKKIACKI 603
           +I G+GP    LL +  G  +V  + + +    L  + G+ +K    I
Sbjct: 96  QIPGVGPKTAVLLYRKLGIKSVDELRKAADAGKLKGLPGLGEKTVENI 143


>gi|226942058|ref|YP_002797132.1| Rossmann fold nucleotide-binding protein involved in DNA uptake
           [Laribacter hongkongensis HLHK9]
 gi|226716986|gb|ACO76124.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
           uptake [Laribacter hongkongensis HLHK9]
          Length = 383

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           I G+G +R   LLQ+FG+ + +  +    L  I  +  ++A  I
Sbjct: 36  IPGLGAVRLNRLLQAFGSAEAVLEAGTAGLTGI--VPARLAEAI 77


>gi|289808010|ref|ZP_06538639.1| nucleotide excision repair endonuclease [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 194

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 78  KRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKT 134
           K+ +P FN  LR ++    + ++++     +      S         FG FA+  A  ++
Sbjct: 1   KKQQPLFNKRLRRNRQLCSLQLSEQ----KIEVVSARSVDFSHEPNLFGLFANRRAALQS 56

Query: 135 INSLQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYM 181
           + +L     L      +    R R C  F +KRC+G C G+ + + + 
Sbjct: 57  LQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQAHF 104


>gi|168034363|ref|XP_001769682.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679031|gb|EDQ65483.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 279

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           F T+  I  +S E LA   GI ++   ++Y+ FH+
Sbjct: 239 FETLTGIFSASMEDLARCPGIGERKVKRLYDAFHE 273


>gi|298492390|ref|YP_003722567.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
 gi|298234308|gb|ADI65444.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
          Length = 684

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G +  +LL + F TV+ ++ +    +  + GI  +IA  +Y  F    + T
Sbjct: 525 GIRHVGSVNAQLLTEKFTTVEQLAAAKQSDIEGVYGIGAEIAQSVYQWFRTPANQT 580


>gi|293596227|ref|ZP_05229458.2| comE operon protein [Listeria monocytogenes FSL J1-194]
 gi|293593694|gb|EFG01455.1| comE operon protein [Listeria monocytogenes FSL J1-194]
          Length = 211

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 155 ATKDDLQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 208



 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 576 GTVK-MISRSSPETLASIEGISKKIACKIYNH 606
           G+ K  ++ ++ + L  + GI +  A  I  +
Sbjct: 146 GSAKINLNSATKDDLQQVPGIGESKATAIIEY 177


>gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 984

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IG      LL  FG+++ I  +S + + 
Sbjct: 220 DNIPGVRGIGEKTAVKLLNDFGSLEGIY-ASLDQIK 254


>gi|46907712|ref|YP_014101.1| DNA-binding protein ComEA [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094098|ref|ZP_00231823.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858]
 gi|258611690|ref|ZP_05241456.2| comE operon protein [Listeria monocytogenes FSL R2-503]
 gi|293596847|ref|ZP_05264778.2| comE operon protein [Listeria monocytogenes HPB2262]
 gi|300764851|ref|ZP_07074841.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017]
 gi|11991257|gb|AAG42266.1|AF320589_1 competence protein 1 [Listeria monocytogenes]
 gi|46880981|gb|AAT04278.1| DNA-binding protein, ComEA family [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47017528|gb|EAL08336.1| comE operon protein 1 [Listeria monocytogenes str. 4b H7858]
 gi|258605410|gb|EEW18018.1| comE operon protein [Listeria monocytogenes FSL R2-503]
 gi|293582969|gb|EFF95001.1| comE operon protein [Listeria monocytogenes HPB2262]
 gi|300514527|gb|EFK41584.1| hypothetical protein LMHG_12882 [Listeria monocytogenes FSL N1-017]
          Length = 211

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 155 ATKDDLQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 208



 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 576 GTVK-MISRSSPETLASIEGISKKIACKIYNH 606
           G+ K  ++ ++ + L  + GI +  A  I  +
Sbjct: 146 GSAKINLNSATKDDLQQVPGIGESKATAIIEY 177


>gi|319957670|ref|YP_004168933.1| helix-hairpin-helix motif protein [Nitratifractor salsuginis DSM
           16511]
 gi|319420074|gb|ADV47184.1| helix-hairpin-helix motif protein [Nitratifractor salsuginis DSM
           16511]
          Length = 181

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A+   L  I GIGP++   +L+           I     E L  ++GI  +IA  +Y + 
Sbjct: 23  ASKEELMSIKGIGPVKAAAILKCRRTH-----TIRN--REDLMKVQGIGPEIAENVYKNV 75

Query: 608 HKNTSHT 614
                 T
Sbjct: 76  KAKAPGT 82


>gi|296119554|ref|ZP_06838112.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306]
 gi|295967437|gb|EFG80704.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306]
          Length = 700

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R +   +G++     +  E +A  +G+   IA    + F
Sbjct: 530 SIRHVGPTAARAIASRYGSLDAARSADVEDIAETDGVGLVIAESFKDWF 578


>gi|295399379|ref|ZP_06809361.1| DNA repair protein RadC [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110061|ref|YP_003988377.1| DNA repair protein RadC [Geobacillus sp. Y4.1MC1]
 gi|294978845|gb|EFG54441.1| DNA repair protein RadC [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215162|gb|ADP73766.1| DNA repair protein RadC [Geobacillus sp. Y4.1MC1]
          Length = 226

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LLQ F  ++++  +S E + SI+GI    A +I    
Sbjct: 51  RLLQHFEGLRLLKDASIEEITSIKGIGTTKAVQILAAI 88


>gi|258513611|ref|YP_003189833.1| DNA integrity scanning protein DisA [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777316|gb|ACV61210.1| protein of unknown function DUF147 [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 359

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L+Q FGT+  +  ++ E L  +EGI +  A  I    
Sbjct: 306 IENLVQRFGTLSKVLVATIEELDEVEGIGEVRARSIKKGL 345


>gi|254166602|ref|ZP_04873456.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|254168555|ref|ZP_04875399.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|289596107|ref|YP_003482803.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|197622610|gb|EDY35181.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|197624212|gb|EDY36773.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
 gi|289533894|gb|ADD08241.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
           T469]
          Length = 324

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           L+++ G+GP     L ++ +  +  ++ +SP+ LA   GI + +A KI
Sbjct: 16  LEDLPGVGPTTAEKLREAGYTDLIELAVASPKDLADTVGIGEGVAQKI 63


>gi|104773853|ref|YP_618833.1| competence protein ComEA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513860|ref|YP_812766.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422934|emb|CAI97596.1| Competence protein ComEA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093175|gb|ABJ58328.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325125517|gb|ADY84847.1| Competence protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 248

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A  S L ++NGIG  +   ++      G+ K     S + L  + GI  K    I +  
Sbjct: 193 ATASDLQKLNGIGEKKAEQIIAYRQEKGSFK-----SIDELKEVSGIGDKTFAAIKDQL 246


>gi|312880304|ref|ZP_07740104.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
 gi|310783595|gb|EFQ23993.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
          Length = 696

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G      L   FG+++ +   S E LA++EG+   +A  +   F 
Sbjct: 521 GIRNVGDRLAADLAGRFGSLEALEACSEEALAAVEGVGPVVAAAVRAFFR 570


>gi|254882009|ref|ZP_05254719.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
 gi|254834802|gb|EET15111.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
          Length = 665

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF ++  ++ +S + L  ++ I +KIA  I  +F
Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDNLIHVDEIGEKIAQSILLYF 559


>gi|227432395|ref|ZP_03914385.1| crossover junction endoribonuclease subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227351834|gb|EEJ42070.1| crossover junction endoribonuclease subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 196

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           KA ++ L  ++GIGP     +L + G  + +  +        L    G+ KK A +I
Sbjct: 67  KALFNKLLNVSGIGPKSALAILAN-GDAEGLISAVENDNVAYLTQFPGVGKKTAQQI 122


>gi|116617732|ref|YP_818103.1| Holliday junction resolvasome, DNA-binding subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122272067|sp|Q03YJ2|RUVA_LEUMM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116096579|gb|ABJ61730.1| Holliday junction DNA helicase subunit RuvA [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 196

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           KA ++ L  ++GIGP     +L + G  + +  +        L    G+ KK A +I
Sbjct: 67  KALFNKLLNVSGIGPKSALAILAN-GDAEGLISAVENDNVAYLTQFPGVGKKTAQQI 122


>gi|297578580|ref|ZP_06940508.1| DNA ligase [Vibrio cholerae RC385]
 gi|297536174|gb|EFH75007.1| DNA ligase [Vibrio cholerae RC385]
          Length = 669

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I ++S E    +  +   +A  +   F ++ +  
Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571


>gi|229523238|ref|ZP_04412645.1| DNA ligase [Vibrio cholerae TM 11079-80]
 gi|229339601|gb|EEO04616.1| DNA ligase [Vibrio cholerae TM 11079-80]
          Length = 669

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I ++S E    +  +   +A  +   F ++ +  
Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571


>gi|229529935|ref|ZP_04419325.1| DNA ligase [Vibrio cholerae 12129(1)]
 gi|229333709|gb|EEN99195.1| DNA ligase [Vibrio cholerae 12129(1)]
 gi|327483693|gb|AEA78100.1| DNA ligase [Vibrio cholerae LMA3894-4]
          Length = 669

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I ++S E    +  +   +A  +   F ++ +  
Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571


>gi|183179445|ref|ZP_02957656.1| DNA ligase [Vibrio cholerae MZO-3]
 gi|183012856|gb|EDT88156.1| DNA ligase [Vibrio cholerae MZO-3]
          Length = 669

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I ++S E    +  +   +A  +   F ++ +  
Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571


>gi|153217073|ref|ZP_01950837.1| DNA ligase [Vibrio cholerae 1587]
 gi|124113903|gb|EAY32723.1| DNA ligase [Vibrio cholerae 1587]
          Length = 324

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I ++S E    +  +   +A  +   F ++ +  
Sbjct: 175 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 226


>gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
 gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
          Length = 912

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            I GIG    + L+  FG+++ +       L  +  ++ +IA  +  
Sbjct: 187 GIKGIGAKSAQKLITHFGSIESLYE-RESELEEV--VTPRIAHLLRE 230


>gi|254226208|ref|ZP_04919802.1| DNA ligase [Vibrio cholerae V51]
 gi|125621244|gb|EAZ49584.1| DNA ligase [Vibrio cholerae V51]
          Length = 669

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I ++S E    +  +   +A  +   F ++ +  
Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571


>gi|15640987|ref|NP_230618.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|153822692|ref|ZP_01975359.1| DNA ligase [Vibrio cholerae B33]
 gi|229510900|ref|ZP_04400379.1| DNA ligase [Vibrio cholerae B33]
 gi|229518021|ref|ZP_04407465.1| DNA ligase [Vibrio cholerae RC9]
 gi|229608449|ref|YP_002879097.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MJ-1236]
 gi|254291846|ref|ZP_04962629.1| DNA ligase [Vibrio cholerae AM-19226]
 gi|254848101|ref|ZP_05237451.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
 gi|255744753|ref|ZP_05418704.1| DNA ligase [Vibrio cholera CIRS 101]
 gi|262151242|ref|ZP_06028378.1| DNA ligase [Vibrio cholerae INDRE 91/1]
 gi|81545212|sp|Q9KTD1|DNLJ_VIBCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|9655431|gb|AAF94133.1| DNA ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126519773|gb|EAZ76996.1| DNA ligase [Vibrio cholerae B33]
 gi|150422206|gb|EDN14170.1| DNA ligase [Vibrio cholerae AM-19226]
 gi|229344736|gb|EEO09710.1| DNA ligase [Vibrio cholerae RC9]
 gi|229350865|gb|EEO15806.1| DNA ligase [Vibrio cholerae B33]
 gi|229371104|gb|ACQ61527.1| DNA ligase [Vibrio cholerae MJ-1236]
 gi|254843806|gb|EET22220.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
 gi|255737784|gb|EET93178.1| DNA ligase [Vibrio cholera CIRS 101]
 gi|262030933|gb|EEY49561.1| DNA ligase [Vibrio cholerae INDRE 91/1]
          Length = 669

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I ++S E    +  +   +A  +   F ++ +  
Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLQAFFAQDRNQQ 571


>gi|226945096|ref|YP_002800169.1| NAD-dependent DNA ligase LigA [Azotobacter vinelandii DJ]
 gi|254781546|sp|C1DN27|DNLJ_AZOVD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|226720023|gb|ACO79194.1| DNA ligase, NAD-dependent [Azotobacter vinelandii DJ]
          Length = 784

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    + L ++ G++  I ++ PE L  +  +  ++A +I++ F   
Sbjct: 532 GIPDVGEETAKRLARALGSLTRIEKALPEVLIWLPDVGLEVAHEIHSFFRDE 583


>gi|184201557|ref|YP_001855764.1| DNA integrity scanning protein DisA [Kocuria rhizophila DC2201]
 gi|183581787|dbj|BAG30258.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 357

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 557 LDEI---NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L+ I    G      + L+  F  ++ +  ++ E L S+EGI ++ A  +    
Sbjct: 294 LEGIKSMPG---AVAKRLVAQFDGLQSLMAANLEDLMSVEGIGEQRARTVRESL 344


>gi|302670775|ref|YP_003830735.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
 gi|302395248|gb|ADL34153.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
          Length = 675

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I  +G    R +++ F  +  +++ + E    I  I +  A  +Y  FH  
Sbjct: 525 IRNVGKSTAREIMKHFDDLMELTKVTREGFLQIPDIGETTANDLYEFFHDE 575


>gi|294776463|ref|ZP_06741938.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
 gi|294449660|gb|EFG18185.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
          Length = 665

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF ++  ++ +S + L  ++ I +KIA  I  +F
Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDNLIHVDEIGEKIAQSILLYF 559


>gi|304316608|ref|YP_003851753.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778110|gb|ADL68669.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 10/59 (16%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL----QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA    LD + GIG +  + ++    Q  G  + I     E + ++  I  K+  +I +
Sbjct: 148 KATKEELDTLPGIGEVTAQRIIDFREQH-GNFQKI-----EDIMNVSRIGPKLFEQIKD 200


>gi|220930937|ref|YP_002507845.1| predicted nucleic-acid-binding protein (contains the HHH domain)
           [Halothermothrix orenii H 168]
 gi|219992247|gb|ACL68850.1| predicted nucleic-acid-binding protein (contains the HHH domain)
           [Halothermothrix orenii H 168]
          Length = 359

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 21/40 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L+  FG+++ +  + P+ L  ++G+ +  A  I +   +
Sbjct: 309 NLVGHFGSLQKVLNAFPDELDDVDGVGEVRAKAIKDGLRR 348


>gi|150005810|ref|YP_001300554.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
 gi|237725408|ref|ZP_04555889.1| DNA ligase [Bacteroides sp. D4]
 gi|319640984|ref|ZP_07995691.1| DNA ligase [Bacteroides sp. 3_1_40A]
 gi|166215396|sp|A6L5G8|DNLJ_BACV8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|149934234|gb|ABR40932.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
 gi|229436095|gb|EEO46172.1| DNA ligase [Bacteroides dorei 5_1_36/D4]
 gi|317387362|gb|EFV68234.1| DNA ligase [Bacteroides sp. 3_1_40A]
          Length = 665

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF ++  ++ +S + L  ++ I +KIA  I  +F
Sbjct: 515 VGETVAKKVAKSFKSMDALADASLDNLIHVDEIGEKIAQSILLYF 559


>gi|315303231|ref|ZP_07873880.1| ComE operon protein 1 [Listeria ivanovii FSL F6-596]
 gi|313628401|gb|EFR96885.1| ComE operon protein 1 [Listeria ivanovii FSL F6-596]
          Length = 202

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A+ S L  + GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 146 ASTSNLQTVPGIGESKATAIIEY-REKEGLFQ-TIEDLQNVTGIGEKTIEKLKEYL 199


>gi|302875860|ref|YP_003844493.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B]
 gi|307689293|ref|ZP_07631739.1| helicase, RecD/TraA family protein [Clostridium cellulovorans 743B]
 gi|302578717|gb|ADL52729.1| helicase, RecD/TraA family [Clostridium cellulovorans 743B]
          Length = 737

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHF 607
           + GIGP+  R ++Q FG     I     E L  IEGI  K    I   F
Sbjct: 88  VQGIGPVTARKIVQHFGNDALRIMEEDIERLKEIEGIGAKKIKVIAESF 136


>gi|148284229|ref|YP_001248319.1| helicase RecD/TraA, ATP-dependent exoDNAse (exonuclease V)
           [Orientia tsutsugamushi str. Boryong]
 gi|146739668|emb|CAM79461.1| Helicase RecD/TraA, ATP-dependent exoDNAse (exonuclease V)
           [Orientia tsutsugamushi str. Boryong]
          Length = 731

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           K   S L  I GIGP+  + L+Q+FG   + +I    P  L  + GI    A KI+  ++
Sbjct: 97  KYLASGL--IKGIGPIYAKKLVQTFGLDVLTVIENQDPA-LKKVPGIGPIRAKKIWESWN 153


>gi|327475237|gb|AEA77213.1| DNA ligase [Bacillus aquimaris]
          Length = 668

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           +G    + L Q F +++ +   S + L  I  I +K+A  I  +F    
Sbjct: 515 VGAKAAKTLAQQFHSMEKLMTVSKDELTDINEIGEKMAAAIVAYFDNEE 563


>gi|304315504|ref|YP_003850651.1| DNA repair and recombination protein RadA [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588963|gb|ADL59338.1| DNA repair and recombination protein RadA [Methanothermobacter
           marburgensis str. Marburg]
          Length = 311

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L+++  +G    + L  + FG +  ++ ++ + L+    I + +A K+   
Sbjct: 3   ELEDLPNVGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEA 54


>gi|15679382|ref|NP_276499.1| DNA repair and recombination protein RadA [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3914551|sp|O27436|RADA_METTH RecName: Full=DNA repair and recombination protein radA
 gi|2622493|gb|AAB85860.1| DNA repair protein RadA [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 311

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L+++  +G    + L  + FG +  ++ ++ + L+    I + +A K+   
Sbjct: 3   ELEDLPNVGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEA 54


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 13/61 (21%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPE---------TLASIEGI-SKKIACKIY 604
           D I G   +G    + LL+ FG+++ +  ++ +              +GI SK +A  I 
Sbjct: 190 DNIPGLPGVGEKTAQKLLKEFGSLENLLDNTDKLKGKLRENIEANKDKGILSKTLARIIL 249

Query: 605 N 605
           +
Sbjct: 250 D 250


>gi|117928414|ref|YP_872965.1| 5'-3' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648877|gb|ABK52979.1| 5'-3' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 324

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  I G+G      LL++FG+V  +  +
Sbjct: 209 LPGIPGVGEKTAARLLRTFGSVDALLAA 236


>gi|332363474|gb|EGJ41257.1| competence protein CelA [Streptococcus sanguinis SK355]
          Length = 226

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 170 ATEAELQTISGIGQKRASDIIAYRESSGRFK--SVDDLKKVSGIGDKTLEKLKEY 222


>gi|325697125|gb|EGD39012.1| competence protein CelA [Streptococcus sanguinis SK160]
          Length = 239

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 183 ATEAELQTISGIGQKRASDIIAYRESSGRFK--SVDDLKKVSGIGDKTLEKLKEY 235


>gi|324993349|gb|EGC25269.1| competence protein CelA [Streptococcus sanguinis SK405]
 gi|324995340|gb|EGC27252.1| competence protein CelA [Streptococcus sanguinis SK678]
 gi|327473342|gb|EGF18762.1| competence protein CelA [Streptococcus sanguinis SK408]
 gi|327489479|gb|EGF21272.1| competence protein CelA [Streptococcus sanguinis SK1058]
          Length = 243

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 187 ATEAELQTISGIGQKRASDIIAYRESSGRFK--SVDDLKKVSGIGDKTLEKLKEY 239


>gi|308071012|ref|YP_003872617.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus
           polymyxa E681]
 gi|305860291|gb|ADM72079.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus
           polymyxa E681]
          Length = 680

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K + +   S L    I   G    R+L + +  +     ++ E L  +  +   +A  I 
Sbjct: 509 KSKDRDLASFLYALGIPNTGKATTRMLAEHYRDLHKTMSATVEELIELPDVGGIVAESIV 568

Query: 605 NHF 607
             F
Sbjct: 569 AFF 571


>gi|304440231|ref|ZP_07400121.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371280|gb|EFM24896.1| crossover junction ATP-dependent DNA helicase RuvA [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 193

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
            +R+++ +S L  ++GIGP     ++  +G     K I  S  ++L    G+ KK A +I
Sbjct: 64  SKRERSIFSLLTMVSGIGPKVAMGIMGMYGEEELRKYILSSDVKSLTKAPGVGKKTAERI 123


>gi|226224085|ref|YP_002758192.1| integral membrane protein ComEA [Listeria monocytogenes Clip81459]
 gi|254992214|ref|ZP_05274404.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL
           J2-064]
 gi|255520858|ref|ZP_05388095.1| ComEA family DNA-binding protein [Listeria monocytogenes FSL
           J1-175]
 gi|225876547|emb|CAS05256.1| Putative integral membrane protein ComEA [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465525|gb|EGF36754.1| ComEA family DNA-binding protein [Listeria monocytogenes 1816]
 gi|332311926|gb|EGJ25021.1| DNA-binding protein, ComEA family [Listeria monocytogenes str.
           Scott A]
          Length = 200

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 144 ATKDDLQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 197



 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 576 GTVK-MISRSSPETLASIEGISKKIACKIYNH 606
           G+ K  ++ ++ + L  + GI +  A  I  +
Sbjct: 135 GSAKINLNSATKDDLQQVPGIGESKATAIIEY 166


>gi|189182988|ref|YP_001936773.1| exodeoxyribonuclease V alpha subunit [Orientia tsutsugamushi str.
           Ikeda]
 gi|189179759|dbj|BAG39539.1| exodeoxyribonuclease V alpha subunit [Orientia tsutsugamushi str.
           Ikeda]
          Length = 731

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           K   S L  I GIGP+  + L+Q+FG   + +I    P  L  + GI    A KI+  ++
Sbjct: 97  KYLASGL--IKGIGPIYAKKLVQTFGLDVLTVIENQDPA-LKKVPGIGPIRAKKIWESWN 153


>gi|120602570|ref|YP_966970.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
 gi|166215379|sp|A1VDM7|DNLJ2_DESVV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 2
 gi|120562799|gb|ABM28543.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
          Length = 797

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R L  +F  +  +  +  ETL  +  I  ++A  I   F    +
Sbjct: 553 GIRHVGEQTARTLAANFTDLDALREADAETLQQLPDIGPEVAGSIRTFFANEGN 606


>gi|90021526|ref|YP_527353.1| DNA ligase (NAD+) [Saccharophagus degradans 2-40]
 gi|123090491|sp|Q21JI8|DNLJ_SACD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|89951126|gb|ABD81141.1| DNA ligase, NAD-dependent [Saccharophagus degradans 2-40]
          Length = 674

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 552 AAYSPLDEIN---GI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  + LD+I    GI   G    R L   F T+  +  ++ E L  +  +   +A  + +
Sbjct: 506 SKQTSLDKILYALGIREVGRATARNLANHFCTLNKVMDATQEQLIEVTDVGPVVAHYVVD 565

Query: 606 HF 607
            F
Sbjct: 566 FF 567


>gi|328872280|gb|EGG20647.1| hypothetical protein DFA_00508 [Dictyostelium fasciculatum]
          Length = 211

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + K+    L  I  I   + +LLLQ F T++ IS +S + L    G        IY+ F
Sbjct: 148 LQNKSIK-ALLSIPNIKIDQCKLLLQKFETIERISIASIDELNLKTGFDSSFNQMIYDFF 206

Query: 608 HKN 610
            K+
Sbjct: 207 RKD 209


>gi|302338526|ref|YP_003803732.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM
           11293]
 gi|301635711|gb|ADK81138.1| Holliday junction DNA helicase RuvA [Spirochaeta smaragdinae DSM
           11293]
          Length = 202

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 20/97 (20%)

Query: 517 ALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL---- 572
            + L  R+  +            FA      ++++  +  L +++GIGP +   +L    
Sbjct: 48  PVHLIHREDAMLLFA--------FA-----SKKERNLFRELLKVSGIGPKQAVRILSGME 94

Query: 573 -QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
              F  +  +     + L+SI G+ KK A KI     
Sbjct: 95  ADRF--IAALENEDVDLLSSIPGVGKKSAGKIILALR 129


>gi|295093347|emb|CBK82438.1| DNA ligase, NAD-dependent [Coprococcus sp. ART55/1]
          Length = 678

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    +L+ + F   +  + ++       I+GI + IA  I  +F    +
Sbjct: 524 GIANVGEATAKLMAKHFANDMDAMKKADVSAYVEIDGIGQVIAEDIVRYFENEKN 578


>gi|163816857|ref|ZP_02208220.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759]
 gi|158448114|gb|EDP25109.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759]
          Length = 678

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    +L+ + F   +  + ++       I+GI + IA  I  +F    +
Sbjct: 524 GIANVGEATAKLMAKHFANDMDAMKKADVSAYVEIDGIGQVIAEDIVRYFENEKN 578


>gi|298368340|ref|ZP_06979658.1| DNA topoisomerase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282343|gb|EFI23830.1| DNA topoisomerase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 96

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 18/70 (25%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L+ + GIGP + + ++        F         + E L  ++GI       I++
Sbjct: 26  ATAAELEALPGIGPAKAKAIVAYRQQNGQFK--------TVEDLKKVKGIG----EGIFS 73

Query: 606 HFHKNTSHTP 615
                 S  P
Sbjct: 74  KLKDEASVAP 83


>gi|255527259|ref|ZP_05394140.1| protein of unknown function DUF147 [Clostridium carboxidivorans P7]
 gi|296187238|ref|ZP_06855634.1| putative DNA integrity scanning protein [Clostridium
           carboxidivorans P7]
 gi|255509044|gb|EET85403.1| protein of unknown function DUF147 [Clostridium carboxidivorans P7]
 gi|296048109|gb|EFG87547.1| putative DNA integrity scanning protein [Clostridium
           carboxidivorans P7]
          Length = 357

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L++I  I       L+++F  +K    +S E L  +EGI +  A  I N   +
Sbjct: 291 LNKIPRIPTNVIENLVKNFKELKGAMEASYEQLDKVEGIGEARARAIKNGLRR 343


>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
 gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
          Length = 899

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE--GISKKIACKI 603
            I GIG +    L++ FGTV+ + R  PE + +    G  +K+  KI
Sbjct: 192 GIPGIGEVTAAALVRHFGTVEEMLR-RPEEIKAALSRG-GEKVKEKI 236


>gi|300811335|ref|ZP_07091832.1| comEA protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497699|gb|EFK32724.1| comEA protein [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 250

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A  S L ++NGIG  +   ++      G+ K     S + L  + GI  K    I +  
Sbjct: 195 ATASDLQKLNGIGEKKAEQIIAYRQEKGSFK-----SIDELKEVSGIGDKTFAAIKDQL 248


>gi|168034367|ref|XP_001769684.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679033|gb|EDQ65485.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 285

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           F T+  I  +S E LA   GI ++   ++Y+ FH+
Sbjct: 245 FETLTGIFSASMEDLARCPGIGERKVKRLYDAFHE 279


>gi|73536054|pdb|2A1J|A Chain A, Crystal Structure Of The Complex Between The C-Terminal
           Domains Of Human Xpf And Ercc1
          Length = 63

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 6   LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 61


>gi|332981862|ref|YP_004463303.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Mahella australiensis 50-1 BON]
 gi|332699540|gb|AEE96481.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Mahella australiensis 50-1 BON]
          Length = 212

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LD++ GIGP + + ++        F  +        + +  + GI       I +
Sbjct: 160 ELDKLPGIGPAKAQKIIDYREQNGPFKAI--------DDIQQVSGIGPATFENIKD 207



 Score = 40.9 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 581 ISRSSPETLASIEGISKKIACKIYNH 606
           I+ ++ E L  + GI    A KI ++
Sbjct: 153 INSATIEELDKLPGIGPAKAQKIIDY 178


>gi|325684379|gb|EGD26548.1| competence protein ComEA [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 252

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A  S L ++NGIG  +   ++      G+ K     S + L  + GI  K    I +  
Sbjct: 197 ATASDLQKLNGIGEKKAEQIIAYRQEKGSFK-----SIDELKEVSGIGDKTFAAIKDQL 250


>gi|20092019|ref|NP_618094.1| ski2-like helicase [Methanosarcina acetivorans C2A]
 gi|24418451|sp|Q8TL39|HELS_METAC RecName: Full=Putative ski2-type helicase
 gi|19917229|gb|AAM06574.1| helicase [Methanosarcina acetivorans C2A]
          Length = 730

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L +I GIG +R R L  + F +   ++ ++PE +A++ G   KIA +I+ 
Sbjct: 652 LLDIRGIGRVRARKLYGAGFKSTADLAGATPEKVAALVG--PKIAERIFR 699


>gi|327461622|gb|EGF07953.1| competence protein CelA [Streptococcus sanguinis SK1]
          Length = 243

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 187 ATEAELQTISGIGQKRASDIIAYRESSGRFK--SVDDLKKVSGIGDKTLEKLKEY 239


>gi|322385709|ref|ZP_08059353.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
 gi|321270447|gb|EFX53363.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
          Length = 652

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 31/55 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G    R+L++ F  +  +S++S E ++SI+ +   IA  ++++F +  S 
Sbjct: 502 GIRHVGSKASRILMEKFHDMIKLSQASQEEISSIDSLGTVIAQSLHSYFEQEGSQ 556



 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I G+GP     +        V  I R S E L +++G  +K A K+YN    +  ++
Sbjct: 436 NITGLGPAVVEKVFDKNLVKDVAGIYRLSVEDLLTLDGFKEKSANKLYNAIQASKENS 493


>gi|300709641|ref|YP_003735455.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali
           B3]
 gi|299123324|gb|ADJ13663.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali
           B3]
          Length = 344

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           S L+++ G+GP     LL + + T   ++ +SP  L++   + +  A  I   
Sbjct: 5   SDLEDLPGVGPATAEKLLDNGYDTYTSLAVASPAELSNTADVGESSAGDIIRA 57


>gi|184154991|ref|YP_001843331.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO
           3956]
 gi|227514529|ref|ZP_03944578.1| crossover junction endoribonuclease subunit A [Lactobacillus
           fermentum ATCC 14931]
 gi|260663386|ref|ZP_05864277.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum
           28-3-CHN]
 gi|229560093|sp|B2GB19|RUVA_LACF3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|183226335|dbj|BAG26851.1| holliday junction DNA helicase RuvA [Lactobacillus fermentum IFO
           3956]
 gi|227087086|gb|EEI22398.1| crossover junction endoribonuclease subunit A [Lactobacillus
           fermentum ATCC 14931]
 gi|260552238|gb|EEX25290.1| Holliday junction DNA helicase RuvA [Lactobacillus fermentum
           28-3-CHN]
          Length = 200

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  ++ L  ++GIGP     +L      G +  I     + L+   GI KK A +I
Sbjct: 68  KRLFTQLIGVSGIGPKSALAILATPDHQGLIDAIQNGDDKYLSKFPGIGKKTASRI 123


>gi|89100729|ref|ZP_01173584.1| DNA-binding protein [Bacillus sp. NRRL B-14911]
 gi|89084546|gb|EAR63692.1| DNA-binding protein [Bacillus sp. NRRL B-14911]
          Length = 357

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L++I  + P+    L+  F  +  I+ +S E L  +EGI +  A KI     
Sbjct: 294 LNKIPRLPPIIIENLITRFQELPEITAASVEDLDEVEGIGEVRARKIREGLK 345


>gi|302389341|ref|YP_003825162.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302199969|gb|ADL07539.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 211

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LD++ GIGP   + ++        F +V        E L ++ GI +K   ++ +
Sbjct: 159 ELDKLPGIGPALAQRIIDYRNQHGPFKSV--------EELKNVSGIGEKKFEELKD 206



 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ +  E L  + GI   +A +I ++ +++  
Sbjct: 151 NINTAGLEELDKLPGIGPALAQRIIDYRNQHGP 183


>gi|242095058|ref|XP_002438019.1| hypothetical protein SORBIDRAFT_10g006566 [Sorghum bicolor]
 gi|241916242|gb|EER89386.1| hypothetical protein SORBIDRAFT_10g006566 [Sorghum bicolor]
          Length = 226

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L  I GI       L Q+ G+++ I+++S E +     +S + A +I+  F 
Sbjct: 163 VLTSIPGIDSHDANALAQAIGSIEAIAKASKEFILENTDLSTEKAERIFRFFR 215


>gi|197336238|ref|YP_002156719.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
 gi|254781450|sp|B5FGU7|DNLJ_VIBFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|197317728|gb|ACH67175.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
          Length = 668

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   F T++ I  ++ E L  +  +   +A  + N F +  + T
Sbjct: 519 VGEATAANLAAHFYTLEAIQVATFEQLIEVSDVGDIVAKHVLNFFAEPHNKT 570


>gi|218440245|ref|YP_002378574.1| DNA protecting protein DprA [Cyanothece sp. PCC 7424]
 gi|218172973|gb|ACK71706.1| DNA protecting protein DprA [Cyanothece sp. PCC 7424]
          Length = 374

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK----KIACK 602
           +I+GIGP+  + + Q F T++   ++S   L  +EG+ K     IA K
Sbjct: 13  QISGIGPVLLKRIHQHFKTLEGAWKASTTDLKMVEGLGKQLLSAIAEK 60


>gi|147677151|ref|YP_001211366.1| DNA repair proteins [Pelotomaculum thermopropionicum SI]
 gi|146273248|dbj|BAF58997.1| DNA repair proteins [Pelotomaculum thermopropionicum SI]
          Length = 196

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 546 RKRRKKAAYSPLDEIN------GIGPLRKRLL------LQSFGTVKMISRSSPETLASIE 593
           R+R  KA    L EI       G G      L      +  FG+++++  ++ E L+ ++
Sbjct: 20  RERLLKAGAGVLSEIELLAILLGTGSREATALELASQIMARFGSLRLLVDATVEELSEVK 79

Query: 594 GISKKIACKIYNHF 607
           G+    A ++    
Sbjct: 80  GVGLAKASQVKAAL 93


>gi|114776845|ref|ZP_01451888.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
 gi|114552931|gb|EAU55362.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
          Length = 670

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 23/51 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G      L   F  ++++ ++  E L ++  +  ++A  I + F +
Sbjct: 517 GIRHVGSATAAALATHFADLELLMQADEEALLAVPDVGPEVAGSILSFFRE 567


>gi|59712497|ref|YP_205273.1| NAD-dependent DNA ligase LigA [Vibrio fischeri ES114]
 gi|75353581|sp|Q5E3L1|DNLJ_VIBF1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|59480598|gb|AAW86385.1| DNA ligase, NAD(+)-dependent [Vibrio fischeri ES114]
          Length = 668

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L   F T++ I  ++ E L  +  +   +A  + N F +  + T
Sbjct: 519 VGEATAANLAAHFYTLEAIQVATFEQLIEVSDVGDIVAKHVLNFFAEPHNKT 570


>gi|297570387|ref|YP_003691731.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
 gi|296926302|gb|ADH87112.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
          Length = 680

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 25/50 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G +  ++L + F +++ + ++  E    +EGI  ++A  +   F 
Sbjct: 526 GIRHVGEVNAQVLARHFPSLEALQQAMEEDFLEVEGIGSQVAASLVTFFK 575


>gi|218442331|ref|YP_002380656.1| hypothetical protein PCC7424_5604 [Cyanothece sp. PCC 7424]
 gi|218175435|gb|ACK74163.1| hypothetical protein PCC7424_5604 [Cyanothece sp. PCC 7424]
          Length = 253

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIK-----SYMHSNNHTHRI 48
           +++P  P +Y +     R+LY+GKA NLQKR        Y    +   RI
Sbjct: 54  QKLPPLPAIYFVFTPDKRLLYIGKADNLQKRWNNHYKYQYFLETSIDSRI 103


>gi|170059466|ref|XP_001865376.1| DNA excision repair protein ERCC-1 [Culex quinquefasciatus]
 gi|167878242|gb|EDS41625.1| DNA excision repair protein ERCC-1 [Culex quinquefasciatus]
          Length = 243

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
             S L  I  +       L+Q++GT+  +  SS E LA   G   + A K++  F+++
Sbjct: 182 MVSALTSIKPVNKTDAMTLMQNYGTLANMINSSEEKLAQCPGFGARKAKKLHKTFNES 239


>gi|331006918|ref|ZP_08330163.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419238|gb|EGG93659.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 316

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           D+I G   IG      LL+ +G+++ I  S  + L     +  + A +I  +  
Sbjct: 201 DDIPGVPGIGAKTASALLKHYGSIE-IMLSQLDELLLSPPVGVRGAPRIVANLQ 253


>gi|32266013|ref|NP_860045.1| Holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC
           51449]
 gi|44888424|sp|Q7VIU0|RUVA_HELHP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|32262062|gb|AAP77111.1| holliday junction DNA helicase RuvA [Helicobacter hepaticus ATCC
           51449]
          Length = 196

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L +I+G+GP     +L       F   K+I+    E L  + GI  K A KI
Sbjct: 74  KQTFERLIKISGVGPKVAIAILSTYTPTHF--AKIIADKDIEALKKVPGIGVKGAAKI 129


>gi|260889570|ref|ZP_05900833.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
 gi|260860981|gb|EEX75481.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
          Length = 702

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G     LL ++F  ++ +   S E L +++GI  K+A  +    +   +
Sbjct: 546 GIPFVGKFNANLLTKTFKNIENLKNQSIENLLAVKGIGDKVAVAVNTFLNDEDN 599


>gi|322421682|ref|YP_004200905.1| DNA repair protein RadC [Geobacter sp. M18]
 gi|320128069|gb|ADW15629.1| DNA repair protein RadC [Geobacter sp. M18]
          Length = 231

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            S LD    +G    R LL  F ++++++ +S   +  ++GI    A  I    
Sbjct: 45  RSALD----LG----RELLLQFKSLRVLADASCREIQQVKGIGPAKATCILAAL 90


>gi|307352867|ref|YP_003893918.1| DNA repair and recombination protein RadA [Methanoplanus
           petrolearius DSM 11571]
 gi|307156100|gb|ADN35480.1| DNA repair and recombination protein RadA [Methanoplanus
           petrolearius DSM 11571]
          Length = 323

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602
            ++++ G+GP     L ++ + T++ I+ +S   LA    I +  A K
Sbjct: 5   EIEDLPGVGPTTADKLREAGYSTIEGIATASYADLAEAAEIGESTAKK 52


>gi|294786921|ref|ZP_06752175.1| holliday junction DNA helicase RuvA [Parascardovia denticolens
           F0305]
 gi|315226557|ref|ZP_07868345.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia
           denticolens DSM 10105]
 gi|294485754|gb|EFG33388.1| holliday junction DNA helicase RuvA [Parascardovia denticolens
           F0305]
 gi|315120689|gb|EFT83821.1| crossover junction ATP-dependent DNA helicase RuvA [Parascardovia
           denticolens DSM 10105]
          Length = 207

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYN 605
            K  ++ L +++G+GP     +L +  + + + ++        L    G+ KK A KI  
Sbjct: 67  SKTLFTQLQKVSGVGPKAAMAILSTL-SPEELGKAIHDNDVTALTRAPGVGKKGAQKIIL 125

Query: 606 HFHKN 610
             H +
Sbjct: 126 ELHGS 130


>gi|288572814|ref|ZP_06391171.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568555|gb|EFC90112.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 229

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 14/54 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ + GIGP     +L        F +V        + L  ++GI  K    +
Sbjct: 177 ELETLPGIGPKTAAAILSYREKIGPFRSV--------DELTKVKGIGPKKLETV 222


>gi|217076174|ref|YP_002333890.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B]
 gi|217036027|gb|ACJ74549.1| hypothetical protein THA_41 [Thermosipho africanus TCF52B]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 14/63 (22%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA    L+++ GIGP + + +++       F ++          L ++ GI  K   KI 
Sbjct: 135 KADEKQLEKLPGIGPTKAKRIIEYREKNGKFNSLN--------ELLNVNGIGPKTLEKIK 186

Query: 605 NHF 607
           N+ 
Sbjct: 187 NYL 189



 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           KA    L  + GIG ++ + ++          ++     S + L ++ GI      KI +
Sbjct: 58  KADLEQLMSLPGIGTVKAKAIISY-------RQAHGNFNSIDDLINVTGIGPSTLEKIRD 110

Query: 606 H 606
           +
Sbjct: 111 Y 111


>gi|163841905|ref|YP_001626310.1| DNA integrity scanning protein DisA [Renibacterium salmoninarum
           ATCC 33209]
 gi|162955381|gb|ABY24896.1| DNA-binding protein [Renibacterium salmoninarum ATCC 33209]
          Length = 358

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ F  ++ +  ++ E L ++EGI ++ A  +    
Sbjct: 308 RLVEQFDGLQNLMAATIEDLMAVEGIGEQRARTVREGL 345


>gi|323481438|gb|ADX80877.1| competence protein ComEA helix-hairpin-helix repeat region domain
           protein [Enterococcus faecalis 62]
          Length = 214

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 157 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVDRLKD 208

Query: 606 HF 607
             
Sbjct: 209 ML 210


>gi|315150112|gb|EFT94128.1| comEA protein [Enterococcus faecalis TX0012]
          Length = 225

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVPGIGEKTVDRLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|5733399|gb|AAD49562.1|AF126866_1 NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis]
          Length = 672

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 14/77 (18%)

Query: 548 RRKKAAYSPLDEING-----------I---GPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  K   + L+E  G           I   G    + L   F T++ +  +S ++L  + 
Sbjct: 491 KSAKNLVTALEEAKGTTLAKFLYSLGIREAGEATAQNLANHFLTLENVINASIDSLTQVS 550

Query: 594 GISKKIACKIYNHFHKN 610
            + + +A  +   F + 
Sbjct: 551 DVGEIVAAHVRGFFDEE 567


>gi|78779378|ref|YP_397490.1| helix-hairpin-helix DNA-binding, class 1 [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712877|gb|ABB50054.1| Helix-hairpin-helix DNA-binding, class 1 [Prochlorococcus marinus
           str. MIT 9312]
          Length = 106

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI 599
           L  + G+G    + L ++ F T+  +  +    L ++ G+   +
Sbjct: 55  LTTLPGVGAKSAKALYEAGFKTINAVIEADENDLLAVSGVGINL 98


>gi|255034029|ref|YP_003084650.1| DNA protecting protein DprA [Dyadobacter fermentans DSM 18053]
 gi|254946785|gb|ACT91485.1| DNA protecting protein DprA [Dyadobacter fermentans DSM 18053]
          Length = 372

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 19/45 (42%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            GIG +  R L+   G+   +  S    L  I GI  KI   I N
Sbjct: 19  PGIGAVTIRQLISYCGSASQVFESDYRKLIKIPGIGDKIVKAILN 63


>gi|254525711|ref|ZP_05137763.1| helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537135|gb|EEE39588.1| helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus
           marinus str. MIT 9202]
          Length = 107

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI 599
           KK   + L  + G+G    + L ++ F T K +  +  + L ++ G+   +
Sbjct: 50  KKNIET-LTTLPGVGAKSAKALYEAGFKTTKAVIAADEKDLLAVSGVGINL 99


>gi|209695779|ref|YP_002263709.1| NAD-dependent DNA ligase LigA [Aliivibrio salmonicida LFI1238]
 gi|254781250|sp|B6EJQ6|DNLJ_ALISL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|208009732|emb|CAQ80037.1| NAD-dependent DNA ligase [Aliivibrio salmonicida LFI1238]
          Length = 669

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 547 KRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + K+   S       I  +G      L   F T+  IS ++ E L  +  +   +A  I
Sbjct: 500 NKAKETTLSRFLYSLGIREVGEATAANLALHFQTLNAISSATFEQLIEVSDVGDIVAKHI 559

Query: 604 YNHFHK 609
              F +
Sbjct: 560 LGFFSE 565


>gi|157413434|ref|YP_001484300.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Prochlorococcus marinus str. MIT 9215]
 gi|157388009|gb|ABV50714.1| Helix-hairpin-helix DNA-binding protein containing motif class 1
           [Prochlorococcus marinus str. MIT 9215]
          Length = 114

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI 599
           KK   + L  + G+G    + L ++ F T K +  +  + L ++ G+   +
Sbjct: 57  KKNIET-LTTLPGVGAKSAKALYEAGFKTTKAVIAADEKDLLAVSGVGINL 106


>gi|126696407|ref|YP_001091293.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543450|gb|ABO17692.1| Helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus
           marinus str. MIT 9301]
          Length = 109

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI 599
           KK   + L  + G+G    + L ++ F T K +  +  + L ++ G+   +
Sbjct: 52  KKNIET-LTTLPGVGAKSAKALYEAGFKTTKAVIAADEKDLLAVSGVGINL 101


>gi|14582732|gb|AAK69611.1|AF325828_1 unknown [Bacillus pumilus]
          Length = 389

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL+ I GIGP   + L   F T + ++   + E L ++  I +K++  I   
Sbjct: 319 PLEYIPGIGPKTLKKLKDHFKTEMDILHNVNSEALETV--IPQKLSQLILQA 368


>gi|327480472|gb|AEA83782.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri DSM 4166]
          Length = 791

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 557 LD--EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           LD   I  I     + L + FG+++ I  +    L  +E +++K A  + ++F K+ +
Sbjct: 625 LDRLNIPHIARTGAQRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKSEN 682



 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +LL ++ G++  I R+ P+ L  +  +  ++A +I++ F    + T
Sbjct: 538 GIPDVGEETAKLLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFFEDEHNRT 593


>gi|110667271|ref|YP_657082.1| hypothetical protein HQ1304A [Haloquadratum walsbyi DSM 16790]
 gi|109625018|emb|CAJ51433.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 214

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 562 GIGPLRKRLL-LQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           G+G  R R L ++   T+  I  +S   +A ++G  ++ A  + 
Sbjct: 122 GVGEKRLRKLEMERLVTLNDILDASINEIAEVDGFGEQTAKTLK 165


>gi|329725335|gb|EGG61818.1| comEA protein [Staphylococcus epidermidis VCU144]
          Length = 200

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  I GIGP + + +L        F ++        + L  I+G  KK   K+  
Sbjct: 145 ATEEQLKNIPGIGPSKAKEILNYREQNHGFNSI--------DDLMKIKGFGKKTFEKLKE 196

Query: 606 HF 607
           HF
Sbjct: 197 HF 198


>gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58]
 gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58]
          Length = 878

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           D I G+   GP +   LLQ FG+V+ I     E L  I+G ++ +  +      
Sbjct: 193 DNIPGVKGCGPKKAAALLQQFGSVEGI----LENLEHIKGSNQTMLKEQKEILQ 242


>gi|229916360|ref|YP_002885006.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Exiguobacterium sp. AT1b]
 gi|229467789|gb|ACQ69561.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Exiguobacterium sp. AT1b]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           ++ ++ E L ++ GI    A  I NH   N  
Sbjct: 132 VNSATKEELMTVPGIGPAKAEAILNHLKANGP 163


>gi|282165652|ref|YP_003358037.1| DNA repair and recombination protein RadA [Methanocella paludicola
           SANAE]
 gi|282157966|dbj|BAI63054.1| DNA repair and recombination protein RadA [Methanocella paludicola
           SANAE]
          Length = 323

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +++ G+GP     L ++ + +++ I+ +SP  LA+   + +  A KI   
Sbjct: 8   EDLPGVGPATADKLKEAGYTSIEAIAVASPSELAAAAEVGENTASKIVAA 57


>gi|271965900|ref|YP_003340096.1| exodeoxyribonuclease V [Streptosporangium roseum DSM 43021]
 gi|270509075|gb|ACZ87353.1| Exodeoxyribonuclease V [Streptosporangium roseum DSM 43021]
          Length = 738

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           ++   S L  I GIGP     ++  FG  T+++I  + PE L  + G+  K    I
Sbjct: 92  QRYLGSGL--IKGIGPKMAERIVDHFGADTLQIIETA-PERLVEVPGLGPKRTKMI 144


>gi|172058107|ref|YP_001814567.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum
           255-15]
 gi|229560031|sp|B1YJR2|RUVA_EXIS2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|171990628|gb|ACB61550.1| Holliday junction DNA helicase RuvA [Exiguobacterium sibiricum
           255-15]
          Length = 197

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKI 599
             R RR++A ++ L  + GIGP     ++ S G V  +  +  +     L    G+ KK 
Sbjct: 60  GFRSRRERALFTKLLGVTGIGPKGSLAIVAS-GDVDALVEAIEQEKESYLIKFPGVGKKT 118

Query: 600 ACK 602
           A +
Sbjct: 119 AKQ 121


>gi|282875982|ref|ZP_06284849.1| comEA protein [Staphylococcus epidermidis SK135]
 gi|281295007|gb|EFA87534.1| comEA protein [Staphylococcus epidermidis SK135]
 gi|329737348|gb|EGG73602.1| ComE operon protein 1 [Staphylococcus epidermidis VCU028]
          Length = 200

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  I GIGP + + +L        F ++        + L  I+G  KK   K+  
Sbjct: 145 ATEEQLKNIPGIGPSKAKEILNYREQNHGFNSI--------DDLMKIKGFGKKTFEKLKE 196

Query: 606 HF 607
           HF
Sbjct: 197 HF 198


>gi|164686324|ref|ZP_02210354.1| hypothetical protein CLOBAR_02762 [Clostridium bartlettii DSM
           16795]
 gi|164601926|gb|EDQ95391.1| hypothetical protein CLOBAR_02762 [Clostridium bartlettii DSM
           16795]
          Length = 236

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LD+I G+G      +L        F ++        E + ++ GI  K    + +
Sbjct: 184 QLDDIPGVGEATANKILSYRDENGEFKSI--------EEIKNVNGIGDKKFENMKD 231


>gi|291485217|dbj|BAI86292.1| DNA repair protein RadC [Bacillus subtilis subsp. natto BEST195]
          Length = 231

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            LL+SF  ++++  +S E L+SI GI    A +I   
Sbjct: 56  RLLRSFDGLRLLKEASVEELSSIPGIGMVKAIQILAA 92


>gi|16079856|ref|NP_390682.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310744|ref|ZP_03592591.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315069|ref|ZP_03596874.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221319988|ref|ZP_03601282.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324270|ref|ZP_03605564.1| DNA repair protein RadC [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321312335|ref|YP_004204622.1| hypothetical protein BSn5_04835 [Bacillus subtilis BSn5]
 gi|400964|sp|Q02170|YSXA_BACSU RecName: Full=UPF0758 protein ysxA
 gi|142854|gb|AAA22396.1| homologous to E. coli radC gene product and to unidentified protein
           from Staphylococcus aureus [Bacillus subtilis]
 gi|143162|gb|AAA22583.1| orfB [Bacillus subtilis]
 gi|2635269|emb|CAB14764.1| putative DNA repair protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|320018609|gb|ADV93595.1| hypothetical protein BSn5_04835 [Bacillus subtilis BSn5]
          Length = 231

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            LL+SF  ++++  +S E L+SI GI    A +I   
Sbjct: 56  RLLRSFDGLRLLKEASVEELSSIPGIGMVKAIQILAA 92


>gi|86152359|ref|ZP_01070569.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|121613207|ref|YP_999730.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|153951474|ref|YP_001397284.1| competence protein ComEA [Campylobacter jejuni subsp. doylei
           269.97]
 gi|167004706|ref|ZP_02270464.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|205355752|ref|ZP_03222522.1| putative non-specific DNA binding protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|85840656|gb|EAQ57908.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|87249012|gb|EAQ71974.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|152938920|gb|ABS43661.1| competence protein ComEA [Campylobacter jejuni subsp. doylei
           269.97]
 gi|205346529|gb|EDZ33162.1| putative non-specific DNA binding protein [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 79

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYN 605
           A    L  +NGIG  + + +L+          +   S + L  ++GI  K+  KI N
Sbjct: 24  ATLKELKSLNGIGEAKAKAILEY------RKEANFTSIDDLKKVKGIGDKLFEKIKN 74


>gi|313123470|ref|YP_004033729.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280033|gb|ADQ60752.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 252

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A  S L ++NGIG  +   ++      G+ K     S + L  + GI  K    I +  
Sbjct: 197 ATASDLQKLNGIGEKKAEQIIAYRQEKGSFK-----SIDELKEVSGIGDKTFAAIKDQL 250


>gi|293366450|ref|ZP_06613127.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319219|gb|EFE59588.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735316|gb|EGG71608.1| ComE operon protein 1 [Staphylococcus epidermidis VCU045]
          Length = 200

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  I GIGP + + +L        F ++        + L  I+G  KK   K+  
Sbjct: 145 ATEEQLKNIPGIGPSKAKEILNYREQNHGFNSI--------DDLMKIKGFGKKTFEKLKE 196

Query: 606 HF 607
           HF
Sbjct: 197 HF 198


>gi|167755868|ref|ZP_02427995.1| hypothetical protein CLORAM_01385 [Clostridium ramosum DSM 1402]
 gi|237734836|ref|ZP_04565317.1| predicted protein [Mollicutes bacterium D7]
 gi|167704807|gb|EDS19386.1| hypothetical protein CLORAM_01385 [Clostridium ramosum DSM 1402]
 gi|229382164|gb|EEO32255.1| predicted protein [Coprobacillus sp. D7]
          Length = 166

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 13/61 (21%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A+   L  I GIGP     ++       F        ++ E +  + GI +K   +I   
Sbjct: 112 ASKEQLMTIKGIGPKTADKIIDYRNEHPF--------ATIEEIKEVSGIGEKTYLRIREL 163

Query: 607 F 607
            
Sbjct: 164 L 164


>gi|253583310|ref|ZP_04860508.1| DNA ligase [Fusobacterium varium ATCC 27725]
 gi|251833882|gb|EES62445.1| DNA ligase [Fusobacterium varium ATCC 27725]
          Length = 688

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K+R  +       I  IG    ++L ++   +  + +   E L  I+GI  K A  +Y+ 
Sbjct: 516 KKRDYSKVIYALGIPFIGKYSGKILAEASRNIDNLMKMEIEELMEIDGIGDKGAKAVYDF 575

Query: 607 FHKNTS 612
           F    +
Sbjct: 576 FRDEEN 581


>gi|317481235|ref|ZP_07940306.1| RecD/TraA family helicase [Bacteroides sp. 4_1_36]
 gi|316902568|gb|EFV24451.1| RecD/TraA family helicase [Bacteroides sp. 4_1_36]
          Length = 748

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  + GIGP   +L++  FG  T+ +I   + E L  + GI KK   KI
Sbjct: 83  KYLGSGL--VKGIGPKFAKLIVAKFGLETIDVIES-NIERLHEVPGIGKKRVEKI 134


>gi|332361706|gb|EGJ39510.1| competence protein CelA [Streptococcus sanguinis SK1056]
          Length = 226

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 170 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 222


>gi|327468971|gb|EGF14443.1| competence protein ComEA [Streptococcus sanguinis SK330]
          Length = 243

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 187 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 239


>gi|327458707|gb|EGF05055.1| competence protein CelA [Streptococcus sanguinis SK1057]
          Length = 239

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 183 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 235


>gi|308233991|ref|ZP_07664728.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Atopobium vaginae DSM 15829]
 gi|328944000|ref|ZP_08241465.1| competence protein ComEA [Atopobium vaginae DSM 15829]
 gi|327491969|gb|EGF23743.1| competence protein ComEA [Atopobium vaginae DSM 15829]
          Length = 277

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 20/67 (29%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---------QSFGTVKMISRSSPETLASIEGISKKIAC 601
           KA+ + L E+ G+GP     ++         +             E L  ++GI  K   
Sbjct: 221 KASKNELLELPGVGPAMADRIIADRREHGPFKH-----------VEDLKRVKGIGSKKFE 269

Query: 602 KIYNHFH 608
           K+  + H
Sbjct: 270 KVRKYLH 276


>gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046]
 gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046]
          Length = 921

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL  +G++  I       L +++ I  K+   I  H
Sbjct: 187 GVPGVGAKTAAKLLTEYGSIGGI-------LENVDKIKGKVGQNIKEH 227


>gi|228477011|ref|ZP_04061649.1| late competence protein required for DNA binding and uptake
           [Streptococcus salivarius SK126]
 gi|228251030|gb|EEK10201.1| late competence protein required for DNA binding and uptake
           [Streptococcus salivarius SK126]
          Length = 231

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L  I+GIG  R   ++      G  +     S + L ++ GI  K   KI    
Sbjct: 175 ATSEELQTISGIGAKRAEDIITYRESHGGFQ-----SVDDLKNVSGIGDKTLEKIRESL 228


>gi|218442350|ref|YP_002380674.1| Excinuclease ABC C subunit domain protein [Cyanothece sp. PCC 7424]
 gi|218175454|gb|ACK74181.1| Excinuclease ABC C subunit domain protein [Cyanothece sp. PCC 7424]
          Length = 253

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 4   EQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIK-----SYMHSNNHTHRI 48
           +++P  P +Y +     R+LY+GKA NLQKR        Y    +   RI
Sbjct: 54  QKLPPLPAIYFVFTPDKRLLYIGKADNLQKRWNNHYKYQYFVETSLDCRI 103


>gi|188997338|ref|YP_001931589.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
 gi|254781435|sp|B2V5U1|DNLJ_SULSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188932405|gb|ACD67035.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 704

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G +  + L  +   +  +   +   L  +  I  K+A +IYN FH   +
Sbjct: 552 VGEVTAKTLASAVRCIDDLKNFTITDLMKLPDIGYKVASEIYNFFHNQEN 601


>gi|74317784|ref|YP_315524.1| competence protein ComEA [Thiobacillus denitrificans ATCC 25259]
 gi|74057279|gb|AAZ97719.1| Competence protein ComEA [Thiobacillus denitrificans ATCC 25259]
          Length = 89

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 14/58 (24%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603
           A  S L+ I G+GP + + ++        F +V+         L  ++G  K    K+
Sbjct: 27  ATQSELEAIRGVGPAKAKAIISYRDANGAFKSVQ--------ELDKVKGFGKASVEKL 76


>gi|219849021|ref|YP_002463454.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM
           9485]
 gi|254766951|sp|B8GCH4|RUVA_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219543280|gb|ACL25018.1| Holliday junction DNA helicase RuvA [Chloroflexus aggregans DSM
           9485]
          Length = 195

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYN 605
           +++ +  L  ++G+GP     LL S GT   +           LA + GI KK A +I  
Sbjct: 68  QRSLFEQLIGVSGVGPKLALSLLSS-GTPDEVRSMIAGGDVARLARVPGIGKKTAERIVL 126

Query: 606 HFH 608
              
Sbjct: 127 ELR 129


>gi|315303635|ref|ZP_07874170.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596]
 gi|313627998|gb|EFR96596.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596]
          Length = 678

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL  I  I +K+A  I  +F    
Sbjct: 515 GIRHVGAKAAKSLAIYFETMDKLKLADKETLTRINDIGEKMADSIVTYFANEE 567


>gi|297544718|ref|YP_003677020.1| DNA protecting protein DprA [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842493|gb|ADH61009.1| DNA protecting protein DprA [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 362

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R+K     L  + GIG      L++ F T + + ++    +    G SKK+A KI   
Sbjct: 3   REKVFKIWLSAVKGIGYKNFVQLMEFFKTAEEVYKAKEIDIFRAVG-SKKLAQKIIEA 59


>gi|289578442|ref|YP_003477069.1| DNA protecting protein DprA [Thermoanaerobacter italicus Ab9]
 gi|289528155|gb|ADD02507.1| DNA protecting protein DprA [Thermoanaerobacter italicus Ab9]
          Length = 362

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R+K     L  + GIG      L+  F T + + ++    +    G SKK+A KI   
Sbjct: 3   REKVFKIWLSAVKGIGYKNFVQLMGFFKTAEEVYKAKEIDIFKAVG-SKKLAQKIVEA 59


>gi|330444480|ref|YP_004377466.1| transcription termination factor NusA [Chlamydophila pecorum E58]
 gi|328807590|gb|AEB41763.1| transcription termination factor NusA [Chlamydophila pecorum E58]
          Length = 435

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           PL EI GI  L  + L +   + T++ +  +S   L+S+ GI  ++A KI  
Sbjct: 367 PLQEIEGISKLVIQNL-EHAGYDTIRKVLLASASDLSSVPGIGLELAYKILE 417


>gi|291456922|ref|ZP_06596312.1| comEA protein-related protein [Bifidobacterium breve DSM 20213]
 gi|291382199|gb|EFE89717.1| comEA protein-related protein [Bifidobacterium breve DSM 20213]
          Length = 174

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L  I G+GP+  + ++    T+     +S + L  ++GI  K   KI
Sbjct: 122 ELQTITGVGPVTAQRIIDYRKTIG--RYASVDQLLGVKGIGSKTLEKI 167


>gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium]
          Length = 557

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 18/71 (25%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEG-----------ISKKIACKI 603
           D I GI   G      LL+ F  ++ I  ++ + +    G           +SKK+A  I
Sbjct: 192 DNIPGIAGIGEKTACKLLKEFDNLENIL-ANADNIKGAVGEKIRNGKEAALMSKKLARII 250

Query: 604 YN---HFHKNT 611
            +    FH+  
Sbjct: 251 TDVPVQFHEED 261


>gi|75909670|ref|YP_323966.1| excinuclease ABC subunit C [Anabaena variabilis ATCC 29413]
 gi|75703395|gb|ABA23071.1| Excinuclease ABC, C subunit-like protein [Anabaena variabilis
          ATCC 29413]
          Length = 125

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 5  QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH 44
           +P  PG+Y +      +LY+GK  +L+ R        + 
Sbjct: 36 DIPPRPGIYAIRHKNDGLLYIGKTKSLRGR----FSGGHK 71


>gi|332362760|gb|EGJ40556.1| competence protein [Streptococcus sanguinis SK49]
          Length = 239

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 183 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 235


>gi|327400087|ref|YP_004340926.1| DNA repair and recombination protein radA [Archaeoglobus veneficus
           SNP6]
 gi|327315595|gb|AEA46211.1| DNA repair and recombination protein radA [Archaeoglobus veneficus
           SNP6]
          Length = 328

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           L+++  +GP     L ++ F T++ I+ +SP  L++   I +  A KI
Sbjct: 15  LEDLPNVGPAIAEKLREAGFSTIEAIAVASPSELSAAAEIGESTAAKI 62


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 12/58 (20%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA-----SIE-----G-ISKKIACKIYN 605
            I GIG    + L++ +G+++ I  ++   L      ++E     G +SKK+A  I +
Sbjct: 194 GIPGIGEKTAKSLIRQYGSMENII-ANAHELKGKQRENVEMYAQQGLVSKKLATIILD 250


>gi|328912483|gb|AEB64079.1| hypothetical protein LL3_02546 [Bacillus amyloliquefaciens LL3]
          Length = 388

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKIYNH 606
           PL  I G+GP     L ++FGT   I  R+  E LA +  +  KIA  I+  
Sbjct: 319 PLQFIPGVGPKTLEKLKRAFGTEMAILHRAKEEDLARV--VQPKIAAVIHKA 368


>gi|308174148|ref|YP_003920853.1| hypothetical protein BAMF_2257 [Bacillus amyloliquefaciens DSM 7]
 gi|307607012|emb|CBI43383.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
 gi|328554090|gb|AEB24582.1| hypothetical protein BAMTA208_12085 [Bacillus amyloliquefaciens
           TA208]
          Length = 387

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKIYNH 606
           PL  I G+GP     L ++FGT   I  R+  E LA +  +  KIA  I+  
Sbjct: 318 PLQFIPGVGPKTLEKLKRAFGTEMAILHRAKEEDLARV--VQPKIAAVIHKA 367


>gi|38505774|ref|NP_942288.1| exodeoxyribonuclease V alpha chain [Synechocystis sp. PCC 6803]
 gi|38423798|dbj|BAD02008.1| exodeoxyribonuclease V alpha chain [Synechocystis sp. PCC 6803]
          Length = 622

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I G+GP+  + ++  FG  T+++I   S + L  + GI KK    I
Sbjct: 87  KYLGSGL--IKGVGPVTAKRIVAHFGLETLEIIEGES-DRLMEVTGIGKKRVRMI 138


>gi|306833158|ref|ZP_07466288.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338]
 gi|304424732|gb|EFM27868.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338]
          Length = 652

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R LL+ F T+  +  +  +++ASI+G+   IA  + ++F K  +
Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGTVIAKSLRSYFAKEEA 555



 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 559 EINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+GP   + L +        V  I + + E L S++G  +K A K+YN   
Sbjct: 436 NITGLGPSIVKKLFKAELVH--DVADIYQLTVEDLLSLDGFKEKSAEKLYNAIQ 487


>gi|224543223|ref|ZP_03683762.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523856|gb|EEF92961.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM
           15897]
          Length = 664

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I GIG      L   FG++  +  ++   L SI+ +   IA  +   F +N  +
Sbjct: 511 GIKGIGAKMADTLAYHFGSMDALLNANYVQLTSIKDVGDTIASSL-AAFKRNERN 564


>gi|55379507|ref|YP_137357.1| DNA repair and recombination protein RadA [Haloarcula marismortui
           ATCC 43049]
 gi|55232232|gb|AAV47651.1| DNA repair and recombination protein RadA [Haloarcula marismortui
           ATCC 43049]
          Length = 351

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L+E+ G+GP     L  + + + + I+ +SP  L++   I +  A  I     +   
Sbjct: 9   LEELPGVGPATAEKLEDNGYDSYQGIAVASPGELSNTADIGESSAADIIQAAREAAD 65


>gi|21673293|ref|NP_661358.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
 gi|81791793|sp|Q8KF74|DNLJ_CHLTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21646383|gb|AAM71700.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
          Length = 674

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 548 RRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + KK +Y+ L     I  +G    R L  +  ++  +     E LA++  I   IA  I 
Sbjct: 509 KSKKQSYARLLFALGIRHVGAATARELAHACPSIDRLREMDEEALAAVPDIGPVIAASIR 568

Query: 605 NHFHK 609
           + F K
Sbjct: 569 DFFAK 573


>gi|50364975|ref|YP_053400.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
           florum L1]
 gi|81391966|sp|Q6F1V7|DNLJ_MESFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50363531|gb|AAT75516.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
           florum L1]
          Length = 666

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G      L Q +  +  +  ++ E L+SI+ + + +A  I + F   ++
Sbjct: 513 GIRHVGSKTALTLAQIYKNIDNLKNATYEELSSIDSVGEVLAMSIVDWFKIESN 566


>gi|315146726|gb|EFT90742.1| comEA protein [Enterococcus faecalis TX4244]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|307271557|ref|ZP_07552829.1| comEA protein [Enterococcus faecalis TX0855]
 gi|306511829|gb|EFM80827.1| comEA protein [Enterococcus faecalis TX0855]
 gi|315035753|gb|EFT47685.1| comEA protein [Enterococcus faecalis TX0027]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|307277117|ref|ZP_07558221.1| comEA protein [Enterococcus faecalis TX2134]
 gi|306506047|gb|EFM75213.1| comEA protein [Enterococcus faecalis TX2134]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|257419902|ref|ZP_05596896.1| competence protein comEA [Enterococcus faecalis T11]
 gi|257161730|gb|EEU91690.1| competence protein comEA [Enterococcus faecalis T11]
          Length = 225

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 168 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 219

Query: 606 HF 607
             
Sbjct: 220 ML 221


>gi|256963616|ref|ZP_05567787.1| competence protein comEA [Enterococcus faecalis HIP11704]
 gi|256954112|gb|EEU70744.1| competence protein comEA [Enterococcus faecalis HIP11704]
          Length = 211

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 205

Query: 606 HF 607
             
Sbjct: 206 ML 207


>gi|256956726|ref|ZP_05560897.1| competence protein comEA [Enterococcus faecalis DS5]
 gi|256947222|gb|EEU63854.1| competence protein comEA [Enterococcus faecalis DS5]
          Length = 211

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 154 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 205

Query: 606 HF 607
             
Sbjct: 206 ML 207


>gi|256616994|ref|ZP_05473840.1| competence protein CelA [Enterococcus faecalis ATCC 4200]
 gi|256596521|gb|EEU15697.1| competence protein CelA [Enterococcus faecalis ATCC 4200]
          Length = 214

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 157 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 208

Query: 606 HF 607
             
Sbjct: 209 ML 210


>gi|300860782|ref|ZP_07106869.1| putative ComE operon protein 1 [Enterococcus faecalis TUSoD Ef11]
 gi|300849821|gb|EFK77571.1| putative ComE operon protein 1 [Enterococcus faecalis TUSoD Ef11]
          Length = 214

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +++       F         + E L ++ GI +K   ++ +
Sbjct: 157 ATEAELQTISGIGAKKAQEIIRFRDEQGPFK--------TVEELKNVSGIGEKTVERLKD 208

Query: 606 HF 607
             
Sbjct: 209 ML 210


>gi|15920489|ref|NP_376158.1| DNA repair and recombination protein RadA [Sulfolobus tokodaii str.
           7]
 gi|20139589|sp|Q975Y1|RADA_SULTO RecName: Full=DNA repair and recombination protein radA
 gi|15621272|dbj|BAB65267.1| 324aa long hypothetical DNA repair protein radA [Sulfolobus
           tokodaii str. 7]
          Length = 324

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
            K   S L ++ G+G      L+++ + +++ ++ +SP+ L+   GI    A +I
Sbjct: 8   GKKVKS-LSDLPGVGQSILNKLIEAGYSSLEAVAVASPQDLSVAAGIPLTTAQRI 61


>gi|325288193|ref|YP_004263983.1| DNA ligase [Cellulophaga lytica DSM 7489]
 gi|324323647|gb|ADY31112.1| DNA ligase [Cellulophaga lytica DSM 7489]
          Length = 664

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L +++  +  +  +S   LA+++ I ++IA  +   F    +
Sbjct: 515 VGETVAKKLAKAYKNIDALMYASALELATVDEIGERIASSVVAFFQNEIN 564


>gi|193683523|ref|XP_001944270.1| PREDICTED: DNA excision repair protein ERCC-1-like [Acyrthosiphon
           pisum]
          Length = 267

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL +FG+++ I ++S   LA   G ++  A ++YN  HK
Sbjct: 211 LLSTFGSLENICKASQTALALCPGFAQHKATQLYNTLHK 249


>gi|188584801|ref|YP_001916346.1| protein of unknown function DUF147 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349488|gb|ACB83758.1| protein of unknown function DUF147 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 363

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + FG ++ I  +S E L  +EGI +  A  I +   +
Sbjct: 316 ERFGDLRGILNASIEELDDVEGIGEIRARVIKDGLRR 352


>gi|16081891|ref|NP_394295.1| ski2-like helicase [Thermoplasma acidophilum DSM 1728]
 gi|18202974|sp|Q9HJX7|HELS_THEAC RecName: Full=Putative ski2-type helicase
 gi|10640112|emb|CAC11964.1| DNA helicase related protein [Thermoplasma acidophilum]
          Length = 674

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           I G+G +R R L  +   +++ ++ +SP+ + +I G S  +A  I
Sbjct: 617 IPGVGRVRARRLYDAGLRSIEDVASASPDRIKAIYGFSDTLANAI 661


>gi|121587330|ref|ZP_01677101.1| DNA ligase [Vibrio cholerae 2740-80]
 gi|121730035|ref|ZP_01682446.1| DNA ligase [Vibrio cholerae V52]
 gi|147675693|ref|YP_001216443.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O395]
 gi|153818602|ref|ZP_01971269.1| DNA ligase [Vibrio cholerae NCTC 8457]
 gi|227081145|ref|YP_002809696.1| DNA ligase [Vibrio cholerae M66-2]
 gi|229505430|ref|ZP_04394940.1| DNA ligase [Vibrio cholerae BX 330286]
 gi|262167192|ref|ZP_06034905.1| DNA ligase [Vibrio cholerae RC27]
 gi|298498912|ref|ZP_07008719.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
 gi|190359299|sp|A5F2W3|DNLJ_VIBC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781449|sp|C3LTL9|DNLJ_VIBCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121548413|gb|EAX58473.1| DNA ligase [Vibrio cholerae 2740-80]
 gi|121628224|gb|EAX60744.1| DNA ligase [Vibrio cholerae V52]
 gi|126510828|gb|EAZ73422.1| DNA ligase [Vibrio cholerae NCTC 8457]
 gi|146317576|gb|ABQ22115.1| DNA ligase [Vibrio cholerae O395]
 gi|227009033|gb|ACP05245.1| DNA ligase [Vibrio cholerae M66-2]
 gi|227012788|gb|ACP08998.1| DNA ligase [Vibrio cholerae O395]
 gi|229357653|gb|EEO22570.1| DNA ligase [Vibrio cholerae BX 330286]
 gi|262024413|gb|EEY43101.1| DNA ligase [Vibrio cholerae RC27]
 gi|297543245|gb|EFH79295.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
          Length = 669

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I ++S E    +  +   +A  +   F ++ +  
Sbjct: 520 VGDATALNLAQHFLSLEAIQQASLEQFIEVPDVGVVVASHLLAFFAQDRNQQ 571


>gi|207110787|ref|ZP_03244949.1| excinuclease ABC subunit C [Helicobacter pylori HPKX_438_CA4C1]
          Length = 50

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
            L +  GIG    + LL  FG+ + I ++S + 
Sbjct: 4   ALLKEKGIGEASVKKLLDYFGSFEAIEKASEQE 36


>gi|229512467|ref|ZP_04401940.1| DNA ligase [Vibrio cholerae TMA 21]
 gi|229350548|gb|EEO15495.1| DNA ligase [Vibrio cholerae TMA 21]
          Length = 669

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I ++S E    +  +   +A  +   F ++ +  
Sbjct: 520 VGEATALNLAQHFLSLEAIQQASLEQFIEVPDVGVIVASHLQAFFAQDRNQQ 571


>gi|303327018|ref|ZP_07357460.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3]
 gi|302863006|gb|EFL85938.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3]
          Length = 711

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              S L  I  +G    RLL   F  +  + R+  ETL ++  +  ++A  I N +
Sbjct: 536 RLISAL-GIRHVGEQTARLLAGHFRDLDDLGRADAETLQALPDVGPEVAASIRNFY 590


>gi|154686604|ref|YP_001421765.1| YqxK [Bacillus amyloliquefaciens FZB42]
 gi|154352455|gb|ABS74534.1| YqxK [Bacillus amyloliquefaciens FZB42]
          Length = 387

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKIYNH 606
           PL  I G+GP     L ++FGT   I  ++  E LA +  +  KIA  I+  
Sbjct: 318 PLQFIPGVGPKTLEKLKRAFGTEMAILHQAQEEELARV--VQPKIAAVIHKA 367


>gi|158340275|ref|YP_001521445.1| RecD/TraA family helicase [Acaryochloris marina MBIC11017]
 gi|158310516|gb|ABW32131.1| helicase, RecD/TraA family [Acaryochloris marina MBIC11017]
          Length = 753

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           K   S L  I G+GP+  + ++  FG  T+  I  +  E L  + GI+KK    I    
Sbjct: 95  KYLGSGL--IKGVGPVTAKRIVAHFGLDTLD-IIETHIERLIEVPGIAKKRVKLIQTAL 150


>gi|125717568|ref|YP_001034701.1| DNA uptake protein [Streptococcus sanguinis SK36]
 gi|125497485|gb|ABN44151.1| DNA uptake protein, putative [Streptococcus sanguinis SK36]
          Length = 226

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 170 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 222


>gi|94971244|ref|YP_593292.1| NusA antitermination factor [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553294|gb|ABF43218.1| NusA antitermination factor [Candidatus Koribacter versatilis
           Ellin345]
          Length = 534

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 555 SPLDEINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           +PLD++  +G      L    +    +V+ ++  +PE L  + GI  K   KI+
Sbjct: 364 TPLDKVPDLGEAIIEKLSAAGIN---SVEALADMTPEQLEEVPGIGPKTVDKIF 414


>gi|169831623|ref|YP_001717605.1| DNA repair protein RadC [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229485551|sp|B1I4S0|Y1467_DESAP RecName: Full=UPF0758 protein Daud_1467
 gi|169638467|gb|ACA59973.1| DNA repair protein RadC [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 230

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  FG ++ ++ +  E L +++G+    + ++   F
Sbjct: 55  QILSRFGGLRGLAEAGIEELQAVKGVGPAKSAEVRAAF 92


>gi|169237523|ref|YP_001690727.1| hypothetical protein OE5289R [Halobacterium salinarum R1]
 gi|167728750|emb|CAP15609.1| hypothetical protein OE5289R [Halobacterium salinarum R1]
          Length = 478

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 557 LDEINGIGPLRKRLLLQ--SFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L+ + G+G  R+  LL      +   ++++    +A ++GI KK A  I  
Sbjct: 199 LETVTGVG-HRRAELLNNAEIRSRADLAQAEVYEIAQLDGIGKKTARTIVE 248


>gi|150392192|ref|YP_001322241.1| DNA integrity scanning protein DisA [Alkaliphilus metalliredigens
           QYMF]
 gi|149952054|gb|ABR50582.1| protein of unknown function DUF147 [Alkaliphilus metalliredigens
           QYMF]
          Length = 358

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
             L+  F + + I ++S E L  +EGI +  A  I     +
Sbjct: 307 ENLVNQFPSFQKILKASIEKLDEVEGIGEIRARAIKEGLRR 347


>gi|57236924|ref|YP_178039.1| competence protein ComEA [Campylobacter jejuni RM1221]
 gi|86150531|ref|ZP_01068755.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86153956|ref|ZP_01072158.1| conserved domain protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88597700|ref|ZP_01100933.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 84-25]
 gi|148926829|ref|ZP_01810508.1| putative non-specific DNA binding protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|218561704|ref|YP_002343483.1| putative non-specific DNA binding protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|57165728|gb|AAW34507.1| competence protein ComEA [Campylobacter jejuni RM1221]
 gi|85838983|gb|EAQ56248.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85842494|gb|EAQ59707.1| conserved domain protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88190004|gb|EAQ93980.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359410|emb|CAL34192.1| putative non-specific DNA binding protein. Functional
           classification-Synthesis and modification of
           macromolecules-DNA replication,restriction/modification,
           recombination and repair [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145844554|gb|EDK21661.1| putative non-specific DNA binding protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|284925314|gb|ADC27666.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|307746974|gb|ADN90244.1| Competence protein ComEA [Campylobacter jejuni subsp. jejuni M1]
 gi|315057451|gb|ADT71780.1| Periplasmic dsDNA and ssDNA-binding protein [Campylobacter jejuni
           subsp. jejuni S3]
 gi|315928451|gb|EFV07763.1| comE1 [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315929938|gb|EFV09095.1| comE1 [Campylobacter jejuni subsp. jejuni 305]
          Length = 79

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYN 605
           A    L  +NGIG  + + +L+          +   S + L  ++GI  K+  KI N
Sbjct: 24  ATLKELKSLNGIGEAKAKAILEY------RKEANFTSIDDLKKVKGIGDKLFEKIKN 74


>gi|295110374|emb|CBL24327.1| DNA ligase, NAD-dependent [Ruminococcus obeum A2-162]
          Length = 624

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           KA  + L        I+ IG    +++ + F   +  I  +  E +++I+GI   IA  +
Sbjct: 454 KAKKTTLAKVIYSLGISNIGLSNAKVICRYFDDDLDKIRSAKEEEISAIDGIGPVIAGSL 513

Query: 604 YNHFHKNTSHT 614
             +F K+ ++ 
Sbjct: 514 TKYFAKSENNQ 524


>gi|294784746|ref|ZP_06750034.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27]
 gi|294486460|gb|EFG33822.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           K  YS    I  IG +  ++L ++   +  +   + E L SIEGI +  A +I   F K 
Sbjct: 531 KVIYS--LGIPFIGKVASKILAKASKNIDKLMTMTFEELTSIEGIGEIAANEIIAFFKKE 588

Query: 611 TSH 613
            + 
Sbjct: 589 KNQ 591


>gi|152964571|ref|YP_001360355.1| DNA integrity scanning protein DisA [Kineococcus radiotolerans
           SRS30216]
 gi|189083128|sp|A6W5K2|DISA_KINRD RecName: Full=DNA integrity scanning protein disA
 gi|151359088|gb|ABS02091.1| protein of unknown function DUF147 [Kineococcus radiotolerans
           SRS30216]
          Length = 359

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 20/39 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             L+  FG ++ +  +S + L +++G+ ++ A  +    
Sbjct: 308 ERLVDQFGDLQKLLAASIDDLMTVDGVGEQRARAVREGL 346


>gi|313106533|ref|ZP_07792762.1| DNA ligase [Pseudomonas aeruginosa 39016]
 gi|310879264|gb|EFQ37858.1| DNA ligase [Pseudomonas aeruginosa 39016]
          Length = 794

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LL +S G+++ I ++ PE L  +  +  ++A +I+N F
Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  I       L   FG++  I R+    L  +E + ++ A  + + F +  +
Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686


>gi|296390104|ref|ZP_06879579.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAb1]
          Length = 794

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LL +S G+++ I ++ PE L  +  +  ++A +I+N F
Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  I       L   FG++  I R+    L  +E + ++ A  + + F +  +
Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686


>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
 gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
          Length = 920

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL  +G++  I       L +++ I  K+   I  H
Sbjct: 187 GVPGVGAKTAAKLLTEYGSIGGI-------LENVDKIKGKVGQNIKEH 227


>gi|220904890|ref|YP_002480202.1| DNA repair protein RadC [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869189|gb|ACL49524.1| DNA repair protein RadC [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 229

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 15/72 (20%)

Query: 543 TTHRKR-RKKAAYSP--------LDEINGIGPLRK------RLLLQSFGTVKMISRSSPE 587
           T HR R R++    P        L+ + G    RK      + LL+ FG ++ +  + P+
Sbjct: 12  TGHRARLRERFERDPAGMADYEVLELLLGYSLTRKDTKPLAKELLRRFGGIRGVMDARPD 71

Query: 588 TLASIEGISKKI 599
            L ++ G    +
Sbjct: 72  ELLAVPGFGPGL 83


>gi|253702454|ref|YP_003023643.1| DNA repair protein RadC [Geobacter sp. M21]
 gi|251777304|gb|ACT19885.1| DNA repair protein RadC [Geobacter sp. M21]
          Length = 231

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            S LD    +G    R L+  FG++ +++ +S   +  ++GI    A  I    
Sbjct: 45  RSALD----LG----RELMLQFGSLSLLADASCSEIQKVKGIGPAKATCILAAL 90


>gi|152984776|ref|YP_001349158.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PA7]
 gi|190359272|sp|A6V7X3|DNLJ_PSEA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150959934|gb|ABR81959.1| DNA ligase, NAD-dependent [Pseudomonas aeruginosa PA7]
          Length = 794

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LL +S G+++ I ++ PE L  +  +  ++A +I+N F
Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588



 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  I       L   FG++  I R+    L  +E + ++ A  + +   +  +
Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFLDEPAN 686


>gi|15596726|ref|NP_250220.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO1]
 gi|107100960|ref|ZP_01364878.1| hypothetical protein PaerPA_01001990 [Pseudomonas aeruginosa PACS2]
 gi|218892513|ref|YP_002441382.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa LESB58]
 gi|81541359|sp|Q9I3I4|DNLJ_PSEAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781394|sp|B7UVJ3|DNLJ_PSEA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|9947487|gb|AAG04918.1|AE004581_5 DNA ligase [Pseudomonas aeruginosa PAO1]
 gi|218772741|emb|CAW28526.1| DNA ligase [Pseudomonas aeruginosa LESB58]
          Length = 794

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LL +S G+++ I ++ PE L  +  +  ++A +I+N F
Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  I       L   FG++  I R+    L  +E + ++ A  + + F +  +
Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686


>gi|254239878|ref|ZP_04933200.1| DNA ligase [Pseudomonas aeruginosa 2192]
 gi|126193256|gb|EAZ57319.1| DNA ligase [Pseudomonas aeruginosa 2192]
          Length = 794

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LL +S G+++ I ++ PE L  +  +  ++A +I+N F
Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  I       L   FG++  I R+    L  +E + ++ A  + + F +  +
Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686


>gi|254234624|ref|ZP_04927947.1| DNA ligase [Pseudomonas aeruginosa C3719]
 gi|126166555|gb|EAZ52066.1| DNA ligase [Pseudomonas aeruginosa C3719]
          Length = 794

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LL +S G+++ I ++ PE L  +  +  ++A +I+N F
Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  I       L   FG++  I R+    L  +E + ++ A  + + F +  +
Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686


>gi|116049473|ref|YP_791724.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122258581|sp|Q02K12|DNLJ_PSEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115584694|gb|ABJ10709.1| DNA ligase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 794

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LL +S G+++ I ++ PE L  +  +  ++A +I+N F
Sbjct: 540 GIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFF 588



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  I       L   FG++  I R+    L  +E + ++ A  + + F +  +
Sbjct: 633 NIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPAN 686


>gi|325688277|gb|EGD30296.1| competence protein CelA [Streptococcus sanguinis SK72]
 gi|328945523|gb|EGG39674.1| competence protein comEA [Streptococcus sanguinis SK1087]
          Length = 239

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 183 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 235


>gi|307150454|ref|YP_003885838.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7822]
 gi|306980682|gb|ADN12563.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7822]
          Length = 742

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598
           K   S L  I G+GP+  + ++  FG  T+++I   + + L  + GI KK
Sbjct: 97  KYLGSGL--IKGVGPVTAKRIVAHFGLETLEIIENKT-QRLIEVPGIGKK 143


>gi|13541288|ref|NP_110976.1| DNA repair and recombination protein RadA [Thermoplasma volcanium
           GSS1]
 gi|20139594|sp|Q97BJ9|RADA_THEVO RecName: Full=DNA repair and recombination protein radA
 gi|14324671|dbj|BAB59598.1| cell cycle progression protein DMC1 [Thermoplasma volcanium GSS1]
          Length = 323

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISK 597
           K   + L+++ G+G      L ++ +  +  I+ +SP+ L+ + GI +
Sbjct: 8   KEKKTTLEDLPGVGEATAEKLRENGYDDIMAIAVASPKDLSDVTGIGE 55


>gi|218961079|ref|YP_001740854.1| hypothetical protein CLOAM0765 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729736|emb|CAO80648.1| hypothetical protein CLOAM0765 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 312

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 21/225 (9%)

Query: 19  AGRVLYVGKAYNLQKRIKSYMHSNNHTHRI----THMISQINNIRFTVTCTEVEALLLEA 74
           AG VLY G + NL+ ++K    SN    +       + +    + +      + AL+   
Sbjct: 29  AGEVLYAGYSANLKAKLK--FLSNK--AKEGGIYQELWNLAEKLSWITYPQAIFALIHYK 84

Query: 75  NMIKRLKPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKT 134
             +    P +   +R    + Y+ +   H+ P +    + +     Y GPF S   +   
Sbjct: 85  CYLTENSPLYQYQIRPWADYVYLALD-SHRFPFITIQ-EHTNDDWLYLGPFRSRFFLIDV 142

Query: 135 INSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSG------PCTGEISSEKYMEFVHEAK 188
           ++   R   L             PC   +   C G        + + +     +     K
Sbjct: 143 LDIYARILKL-----PACETGEYPCEKREKNLCQGWCLALDENSEKPTDYDLDKLESLLK 197

Query: 189 KFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQN 233
           +      +++ E I +  N+     +++ + +  + +  L+  + 
Sbjct: 198 EAFLVPENSILELIQQERNKYFNALEFDKSSLLDEDIEILNKYRE 242


>gi|119509167|ref|ZP_01628318.1| SMF protein [Nodularia spumigena CCY9414]
 gi|119466333|gb|EAW47219.1| SMF protein [Nodularia spumigena CCY9414]
          Length = 372

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI---YNHFHKNT 611
           I+G+GP+  R L Q FGT+     ++   L  +EG   +   K+    +H H   
Sbjct: 14  ISGVGPVLLRRLHQHFGTLATAWNATKAQLREVEGFGFQTLEKVVAQRSHLHPEQ 68


>gi|78044853|ref|YP_360635.1| RecD/TraA family helicase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996968|gb|ABB15867.1| helicase, RecD/TraA family [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 745

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            + GIG      +++ FG  ++ +I +     L  I GIS + A  +Y    + 
Sbjct: 97  GVKGIGEKTAAKIVERFGMDSLTVILK-DFSQLTKIRGISFEKAESLYQKLKEE 149


>gi|312130376|ref|YP_003997716.1| DNA protecting protein dpra [Leadbetterella byssophila DSM 17132]
 gi|311906922|gb|ADQ17363.1| DNA protecting protein DprA [Leadbetterella byssophila DSM 17132]
          Length = 359

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 16/73 (21%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI----------- 599
           K A S L+   GIG +  ++L+   G+ + + ++    L+ I GI  ++           
Sbjct: 11  KIALSRLE---GIGGVLFKILITRLGSAQEVFQTPLSKLSKIPGIGPQLSQSLRQKTDAL 67

Query: 600 --ACKIYNHFHKN 610
             A KI  + +KN
Sbjct: 68  LEAEKILKYCNKN 80


>gi|269925224|ref|YP_003321847.1| DNA protecting protein DprA [Thermobaculum terrenum ATCC BAA-798]
 gi|269788884|gb|ACZ41025.1| DNA protecting protein DprA [Thermobaculum terrenum ATCC BAA-798]
          Length = 365

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           I  IGP R R LL  FG ++    ++   L + E
Sbjct: 19  IPSIGPARIRKLLAHFGGLQRAWEANALELKAAE 52


>gi|300781381|ref|ZP_07091235.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
           33030]
 gi|300533088|gb|EFK54149.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
           33030]
          Length = 674

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   +G++  +  +S + LA  +G+   IA      F
Sbjct: 519 SIRHVGPTAARALASRYGSMGKLLDASVDDLADTDGVGGIIAESFKEWF 567


>gi|256846124|ref|ZP_05551582.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2]
 gi|256719683|gb|EEU33238.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           K  YS    I  IG +  ++L ++   +  +   + E L SIEGI +  A +I   F K 
Sbjct: 531 KVIYS--LGIPFIGKVASKILAKASKNIDKLMTMTFEELTSIEGIGEIAANEIIAFFKKE 588

Query: 611 TSH 613
            + 
Sbjct: 589 KNQ 591


>gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70]
 gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70]
          Length = 878

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG--ISKKIAC 601
            + GIG      LL+ FGT++ I     +++  + G  + + +A 
Sbjct: 192 GVPGIGEKTALKLLKEFGTIENI----LDSIEQVSGNKLRENLAK 232


>gi|169627665|ref|YP_001701314.1| DNA integrity scanning protein DisA [Mycobacterium abscessus ATCC
           19977]
 gi|169239632|emb|CAM60660.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 361

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
            L+++FG+++ +  +S   L S+EGI    A  I     +    T T
Sbjct: 311 RLVRAFGSLQGLLAASATDLQSVEGIGAMWARHIREGLSRLAESTLT 357


>gi|118473616|ref|YP_890302.1| DNA integrity scanning protein DisA [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174903|gb|ABK75799.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 372

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L++SFG+++ +  +S + L S++GI    A  I    
Sbjct: 323 LVRSFGSLQNLLAASADDLQSVDGIGSMWARHIREGL 359


>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
          Length = 920

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL  +G++  I       L +++ I  K+   I  H
Sbjct: 187 GVPGVGAKTAAKLLTEYGSIGGI-------LENVDKIKGKVGQNIKEH 227


>gi|52424881|ref|YP_088018.1| ComEA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306933|gb|AAU37433.1| ComEA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 111

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L  + GIG ++ + ++     V  I  +S   L++I+GI      KI  + +
Sbjct: 61  LQSLTGIGEVKAKAIVDYRKKVGKIKNAS--ELSNIDGIGDATIEKITPYLN 110


>gi|224023312|ref|ZP_03641678.1| hypothetical protein BACCOPRO_00005 [Bacteroides coprophilus DSM
           18228]
 gi|224016534|gb|EEF74546.1| hypothetical protein BACCOPRO_00005 [Bacteroides coprophilus DSM
           18228]
          Length = 753

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           K   S L  + GIGP   +L+++ FG  T+ +I     E L  + GI KK   KI  
Sbjct: 83  KYLGSGL--VKGIGPKFAQLIVRQFGLETIDVIET-DIERLYEVPGIGKKRVEKIRE 136


>gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1]
 gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1]
          Length = 941

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIGP     L+Q FGT+  +  +S + +        K+   + +H
Sbjct: 206 GVPGIGPKTASQLIQQFGTLDAVL-ASTDQITK-----PKLKQSLIDH 247


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            + GIGP   + L++ +G ++ I + + + ++   G+ KK+A
Sbjct: 196 GVPGIGPKTAQKLIEEYGGIEDIYK-NLDKISP-PGLQKKLA 235


>gi|323127660|gb|ADX24957.1| putative competence protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 220

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           KA    L  I+GIG  R + +L++  ++      + + L  + GI +K   K+ +  
Sbjct: 163 KANLEELQRISGIGVKRAQDILETRDSLGGFK--TLDDLRQVSGIGEKTLEKLKHEL 217


>gi|322412122|gb|EFY03030.1| putative competence protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 220

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           KA    L  I+GIG  R + +L++  ++      + + L  + GI +K   K+ +  
Sbjct: 163 KANLEELQRISGIGVKRAQDILETRDSLGGFK--TLDDLRQVSGIGEKTLEKLKHEL 217


>gi|251782856|ref|YP_002997159.1| putative competence protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391486|dbj|BAH81945.1| putative competence protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 220

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           KA    L  I+GIG  R + +L++  ++      + + L  + GI +K   K+ +  
Sbjct: 163 KANLEELQRISGIGVKRAQDILETRDSLGGFK--TLDDLRQVSGIGEKTLEKLKHEL 217


>gi|196230018|ref|ZP_03128881.1| DNA repair protein RadC [Chthoniobacter flavus Ellin428]
 gi|196225615|gb|EDY20122.1| DNA repair protein RadC [Chthoniobacter flavus Ellin428]
          Length = 231

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R LL  F ++  ++R S + L+ I+G+    A ++   F
Sbjct: 51  RKLLAEFKSLSGLARCSVKELSKIKGVGPAKAVQLVAAF 89


>gi|307151412|ref|YP_003886796.1| DNA protecting protein DprA [Cyanothece sp. PCC 7822]
 gi|306981640|gb|ADN13521.1| DNA protecting protein DprA [Cyanothece sp. PCC 7822]
          Length = 402

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 28/45 (62%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +I+GIGP+  + + Q F ++++   +S   L ++EG+ K+I   I
Sbjct: 39  QISGIGPVLLKRIYQHFQSLEIAWSASTAELGAVEGLGKRILAAI 83


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            + GIGP   + L++ +G ++ I + + + ++   G+ KK+A
Sbjct: 196 GVPGIGPKTAQKLIEEYGGIEDIYK-NLDKISP-PGLQKKLA 235


>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
 gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
          Length = 903

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            + GIGP   + L++ +G ++ I + + + ++   G+ KK+A
Sbjct: 196 GVPGIGPKTAQKLIEEYGGIEDIYK-NLDKISP-PGLQKKLA 235


>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
 gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
          Length = 903

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            + GIGP   + L++ +G ++ I + + + ++   G+ KK+A
Sbjct: 196 GVPGIGPKTAQKLIEEYGGIEDIYK-NLDKISP-PGLQKKLA 235


>gi|224823841|ref|ZP_03696950.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Lutiella nitroferrum 2002]
 gi|224604296|gb|EEG10470.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Lutiella nitroferrum 2002]
          Length = 119

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L+ +NGIGP + + ++        F         + + L ++ GI  K   K+  
Sbjct: 27  ATQQELESLNGIGPAKAKAIMDYRTKQGPFK--------TVDELKNVPGIGDKTLEKLRK 78


>gi|224070062|ref|XP_002195540.1| PREDICTED: excision repair cross-complementing rodent repair
           deficiency, complementation group 4 [Taeniopygia
           guttata]
          Length = 902

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L ++ G+     R L+    ++  +   S + L+ I G +   A ++++  H
Sbjct: 838 LLKMPGVNAKNCRALMTHVKSIAELVTLSKDELSKILG-NAANATQLFDFIH 888


>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
 gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
          Length = 903

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            + GIGP   + L++ +G ++ I + + + ++   G+ KK+A
Sbjct: 196 GVPGIGPKTAQKLIEEYGGIEDIYK-NLDKISP-PGLQKKLA 235


>gi|323341650|ref|ZP_08081883.1| DNA topoisomerase TopA [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464075|gb|EFY09268.1| DNA topoisomerase TopA [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 147

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYNH 606
           L +I GIGP +   +L+       I      S E L +I+GI  K+  +I + 
Sbjct: 97  LTQIKGIGPRKADAILKY-----RIEHEKFISVEELLNIKGIGPKLLDRIKDF 144


>gi|256750933|ref|ZP_05491817.1| Helix-hairpin-helix DNA-binding class 1 [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256750268|gb|EEU63288.1| Helix-hairpin-helix DNA-binding class 1 [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I GIGP+  R +++ FG  ++ +I  + PE L  I+G+S +   +I
Sbjct: 81  KFLSSGL--IPGIGPVTARKIVKKFGVDSLNIIDTA-PERLKEIKGLSDEKIKRI 132


>gi|302148587|pdb|2KN7|A Chain A, Structure Of The Xpf-Single Strand Dna Complex
 gi|302148588|pdb|2KN7|D Chain D, Structure Of The Xpf-Single Strand Dna Complex
          Length = 67

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 11  LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 66


>gi|255291934|dbj|BAH90422.1| Holliday junction DNA helicase RuvA [uncultured bacterium]
          Length = 190

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +A +  L +++G+GP     LL   G +   ++++ S +    L  + GI KK A +
Sbjct: 69  RATFRELIKVSGVGPRTALALLS--GMSAAELAQAVSAQESGRLTKVPGIGKKTAER 123


>gi|220931078|ref|YP_002507986.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
 gi|254781343|sp|B8D122|DNLJ_HALOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|219992388|gb|ACL68991.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
          Length = 670

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           G+G  R   L + + ++  + R+S E L +I+ I   IA  I   F +
Sbjct: 516 GLGVARV--LTEKYRSLSDLMRASGEELVAIDEIGPTIARSIIEFFKE 561


>gi|329942438|ref|ZP_08291248.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10]
 gi|332287079|ref|YP_004421980.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|325507386|gb|ADZ19024.1| holliday junction DNA helicase [Chlamydophila psittaci 6BC]
 gi|328815348|gb|EGF85336.1| holliday junction DNA helicase RuvA [Chlamydophila psittaci Cal10]
 gi|328914313|gb|AEB55146.1| Holliday junction DNA helicase RuvA [Chlamydophila psittaci 6BC]
          Length = 207

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 562 GIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACKI 603
           G+GP     +L +F ++     I+R+   + +AS+ GI KK A K+
Sbjct: 81  GVGPKTGLAILNTF-SLSKLCSIARAEDIKAIASVPGIGKKTAEKL 125


>gi|313847675|emb|CBY16663.1| putative holliday junction DNA helicase RuvA [Chlamydophila
           psittaci RD1]
          Length = 222

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 562 GIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACKI 603
           G+GP     +L +F ++     I+R+   + +AS+ GI KK A K+
Sbjct: 96  GVGPKTGLAILNTF-SLSKLCSIARAEDIKAIASVPGIGKKTAEKL 140


>gi|221632593|ref|YP_002521814.1| PHP domain-containing protein [Thermomicrobium roseum DSM 5159]
 gi|221156427|gb|ACM05554.1| PHP domain protein [Thermomicrobium roseum DSM 5159]
          Length = 581

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKI 603
           L E+ GIGP R  LL +  G  T++ + +++ E  L  + G  +K+  +I
Sbjct: 94  LLEVPGIGPARAHLLYEQLGITTIQDLLQAAQEHKLRKLPGFGEKLEERI 143



 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 12/66 (18%)

Query: 552 AAYSPLDEINGIGPLRKRLL--------LQSFGTVKMISRSSPE--TLASIEGISKKIAC 601
           A    LDEI G+G      +        L+ +  +K       +   L  + GI    A 
Sbjct: 49  ARQGKLDEIPGVGKAIAAKIEEYLRTGRLEYYEQLK--REVPLQAVDLLEVPGIGPARAH 106

Query: 602 KIYNHF 607
            +Y   
Sbjct: 107 LLYEQL 112


>gi|168830347|gb|ACA34443.1| Exo [uncultured bacterium pTW3]
          Length = 306

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            + GIG     +LL  FG++  +  +  + +
Sbjct: 195 GVPGIGAKTAAVLLAHFGSLDALL-ARIDEI 224


>gi|30249435|ref|NP_841505.1| DNA repair protein RadC [Nitrosomonas europaea ATCC 19718]
 gi|54036235|sp|Q82UL9|Y1464_NITEU RecName: Full=UPF0758 protein NE1464
 gi|30138798|emb|CAD85375.1| DNA repair protein radC family [Nitrosomonas europaea ATCC 19718]
          Length = 224

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 559 EINGIGPL-RKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            I G+  +   R LL  FG++  +  +S    + + G+   
Sbjct: 37  GITGVSAVELARKLLTHFGSLTKLCAASLHEFSELPGMGPA 77


>gi|34764322|ref|ZP_00145154.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27885904|gb|EAA23248.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 455

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  IG +  ++L ++   +  +   + E L SIEGI    A +I   F K  + 
Sbjct: 349 GIAEIGKVTSKILAKASKNIDKLMNMTFEELTSIEGIGXIAANEIIAFFKKEKNQ 403


>gi|108801706|ref|YP_641903.1| DNA integrity scanning protein DisA [Mycobacterium sp. MCS]
 gi|119870857|ref|YP_940809.1| DNA integrity scanning protein DisA [Mycobacterium sp. KMS]
 gi|126437693|ref|YP_001073384.1| DNA integrity scanning protein DisA [Mycobacterium sp. JLS]
 gi|108772125|gb|ABG10847.1| protein of unknown function DUF147 [Mycobacterium sp. MCS]
 gi|119696946|gb|ABL94019.1| protein of unknown function DUF147 [Mycobacterium sp. KMS]
 gi|126237493|gb|ABO00894.1| protein of unknown function DUF147 [Mycobacterium sp. JLS]
          Length = 371

 Score = 43.9 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L++SFG+++ +  +S + L S+EGI    A  I    
Sbjct: 322 LVRSFGSLQGLLAASADDLQSVEGIGSMWARHIREGL 358


>gi|271970312|ref|YP_003344508.1| DNA integrity scanning protein DisA [Streptosporangium roseum DSM
           43021]
 gi|270513487|gb|ACZ91765.1| DNA integrity scanning protein DisA [Streptosporangium roseum DSM
           43021]
          Length = 361

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG+++ +  +S   L  + G+ +  A  I    
Sbjct: 311 RLVDQFGSLQKLLAASIGDLQEVGGVGEARARHIREGL 348


>gi|225870290|ref|YP_002746237.1| DNA ligase [Streptococcus equi subsp. equi 4047]
 gi|254781420|sp|C0M6L2|DNLJ_STRE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225699694|emb|CAW93413.1| DNA ligase [Streptococcus equi subsp. equi 4047]
          Length = 652

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  IG    RL+L+++G ++ +   + E LA I+G+   I   +  +F +  +  
Sbjct: 502 GIRHIGAKASRLILEAYGDLEALLAVTAEELAQIDGLGLVIGQSLVQYFQQEQAAQ 557



 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I G+GP     L    L     V  I R S E L +++GI +K A K+     ++ +++
Sbjct: 436 NIAGLGPAVVEKLYSAGLVH--DVADIYRLSLEDLLTLDGIKEKSAEKLLAAIEQSKANS 493


>gi|289581501|ref|YP_003479967.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC
           43099]
 gi|289531054|gb|ADD05405.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC
           43099]
          Length = 343

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L+ + G+GP     L      F + + ++ +SP  L++   + +  A  I N 
Sbjct: 6   LETLPGVGPATADKL--HDAGFDSFQSLAVASPSELSNTADVGESTAADIVNA 56


>gi|85544012|pdb|1Z00|B Chain B, Solution Structure Of The C-Terminal Domain Of Ercc1
           Complexed With The C-Terminal Domain Of Xpf
 gi|116666732|pdb|2AQ0|A Chain A, Solution Structure Of The Human Homodimeric Dna Repair
           Protein Xpf
 gi|116666733|pdb|2AQ0|B Chain B, Solution Structure Of The Human Homodimeric Dna Repair
           Protein Xpf
          Length = 84

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 20  LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 75


>gi|290973391|ref|XP_002669432.1| predicted protein [Naegleria gruberi]
 gi|284082979|gb|EFC36688.1| predicted protein [Naegleria gruberi]
          Length = 597

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           LL  FG++K + +++ + L  + G  KK   K+ N F 
Sbjct: 474 LLNHFGSLKEVIQTTSDELNDLPGFGKKKVKKLINLFQ 511


>gi|261379141|ref|ZP_05983714.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
 gi|269144414|gb|EEZ70832.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
          Length = 96

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + +++       F +V        + L  ++GI   +  K+ +
Sbjct: 27  ELEALPGIGPAKAKAIVEYRAQNGAFKSV--------DELTKVKGIGPAVLAKLKD 74



 Score = 37.8 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++ +S + L ++ GI    A  I  +
Sbjct: 19  NVNAASQQELEALPGIGPAKAKAIVEY 45


>gi|261378489|ref|ZP_05983062.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
 gi|261379152|ref|ZP_05983725.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
 gi|269144381|gb|EEZ70799.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
 gi|269145289|gb|EEZ71707.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
          Length = 99

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + +++       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIVEYRAQNGAFKSV--------DELTKVKGIGPAVLAKLKD 77



 Score = 37.8 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++ +S + L ++ GI    A  I  +
Sbjct: 22  NVNAASQQELEALPGIGPAKAKAIVEY 48


>gi|257052349|ref|YP_003130182.1| DNA repair and recombination protein RadA [Halorhabdus utahensis
           DSM 12940]
 gi|256691112|gb|ACV11449.1| DNA repair and recombination protein RadA [Halorhabdus utahensis
           DSM 12940]
          Length = 348

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L+++ G+GP     L ++ + + + I+ +SP  L++   + +  A  I     +   
Sbjct: 7   LEDLPGVGPATAEKLTENGYDSYQGIAVASPGELSNTADVGESSAADIIQAAREAAD 63


>gi|109157521|pdb|2F1H|A Chain A, Recombinase In Complex With Amp-Pnp And Potassium
 gi|109157522|pdb|2F1I|A Chain A, Recombinase In Complex With Amp-Pnp
 gi|109157523|pdb|2F1J|A Chain A, Recombinase In Complex With Adp
          Length = 322

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602
           L ++ G+GP     L+++ +     I+ ++   L  IEGIS+K A K
Sbjct: 5   LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAK 51


>gi|52695616|pdb|1T4G|A Chain A, Atpase In Complex With Amp-Pnp
 gi|56967254|pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
           Co-F
 gi|88193103|pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
 gi|88193104|pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
           Concentration Of K+
 gi|88193105|pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
           Concentration Of K+
 gi|114793501|pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
 gi|118138042|pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
 gi|257097225|pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
          Length = 322

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602
           L ++ G+GP     L+++ +     I+ ++   L  IEGIS+K A K
Sbjct: 5   LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAK 51


>gi|13878668|sp|O73948|RADA_METVO RecName: Full=DNA repair and recombination protein radA
 gi|3219351|gb|AAC23499.1| RadA [Methanococcus voltae PS]
          Length = 322

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACK 602
           L ++ G+GP     L+++ +     I+ ++   L  IEGIS+K A K
Sbjct: 5   LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAK 51


>gi|322513419|ref|ZP_08066534.1| competence protein ComEA [Actinobacillus ureae ATCC 25976]
 gi|322120775|gb|EFX92648.1| competence protein ComEA [Actinobacillus ureae ATCC 25976]
          Length = 191

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  I+GIG ++ + ++     V  I  +    L++I GI +    K+  + 
Sbjct: 141 LQTISGIGEVKAQAIIDYRNKVGKIKNA--AELSNISGIGEATIQKVVPYL 189


>gi|294617319|ref|ZP_06696959.1| DNA repair protein RadC [Enterococcus faecium E1679]
 gi|291596428|gb|EFF27681.1| DNA repair protein RadC [Enterococcus faecium E1679]
          Length = 187

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL++FG +  + +++   L  I GI +  A +I  
Sbjct: 52  NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87


>gi|226329884|ref|ZP_03805402.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198]
 gi|225200679|gb|EEG83033.1| hypothetical protein PROPEN_03797 [Proteus penneri ATCC 35198]
          Length = 206

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
           +++++A +  L ++NG+GP     +L     + F  V  I   S  +L  + G+ KK A 
Sbjct: 66  QKQERALFRELIKVNGVGPKLALAILSGMSARQF--VTAIENESISSLVKLPGVGKKTAE 123

Query: 602 KI 603
           ++
Sbjct: 124 RL 125


>gi|197284986|ref|YP_002150858.1| Holliday junction DNA helicase RuvA [Proteus mirabilis HI4320]
 gi|227355390|ref|ZP_03839791.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
 gi|229560118|sp|B4ETP7|RUVA_PROMH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|194682473|emb|CAR42407.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           HI4320]
 gi|227164614|gb|EEI49485.1| Holliday junction ATP-dependent DNA helicase [Proteus mirabilis
           ATCC 29906]
          Length = 207

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
           +++++A +  L ++NG+GP     +L     + F  V  I   S  +L  + G+ KK A 
Sbjct: 66  QKQERALFRELIKVNGVGPKLALAILSGMSARQF--VTAIENESISSLVKLPGVGKKTAE 123

Query: 602 KI 603
           ++
Sbjct: 124 RL 125


>gi|270308617|ref|YP_003330675.1| DNA repair protein [Dehalococcoides sp. VS]
 gi|270154509|gb|ACZ62347.1| DNA repair protein [Dehalococcoides sp. VS]
          Length = 275

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 16/72 (22%)

Query: 542 ITTHRKR-RKKAAYSPLDEING---------IGPLRK------RLLLQSFGTVKMISRSS 585
              HR+R R++   + LD +N          +G  R+      +  ++ FG+++ +  +S
Sbjct: 23  NAGHRQRLRERFLKAGLDGLNDYEVVELLLTLGTPRRDCKQAAKEAIKHFGSLRAVLEAS 82

Query: 586 PETLASIEGISK 597
           P  L SI+GI +
Sbjct: 83  PAELLSIKGIGE 94


>gi|304314962|ref|YP_003850109.1| helicase [Methanothermobacter marburgensis str. Marburg]
 gi|302588421|gb|ADL58796.1| predicted helicase [Methanothermobacter marburgensis str. Marburg]
          Length = 693

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G +R R ++++FG  + +     + L  I+GI +K+A  I  +
Sbjct: 641 GVRGLGRVRARKIVETFG--EDLRHVRKDELKRIDGIGEKLAEAIRGY 686


>gi|75812524|ref|YP_320143.1| helicase RecD/TraA [Anabaena variabilis ATCC 29413]
 gi|75705280|gb|ABA24954.1| Helicase RecD/TraA [Anabaena variabilis ATCC 29413]
          Length = 749

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606
           K   S L  I G+GP+  R ++  FG  T+ +I     + L  ++GI+KK    I N 
Sbjct: 98  KYLGSGL--IKGVGPVTARRIVAHFGLETLDIIEN-QIDRLIEVQGIAKKRIKLIKNA 152


>gi|17233087|ref|NP_490177.1| exodeoxyribonuclease V, alpha chain [Nostoc sp. PCC 7120]
 gi|17135609|dbj|BAB78155.1| exodeoxyribonuclease V, alpha chain [Nostoc sp. PCC 7120]
          Length = 748

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606
           K   S L  I G+GP+  R ++  FG  T+ +I     + L  ++GI+KK    I N 
Sbjct: 98  KYLGSGL--IKGVGPVTARRIVAHFGLETLDIIEN-QIDRLIEVQGIAKKRIKLIKNA 152


>gi|148358122|ref|YP_001249324.1| GIY endonuclease [Gibberella zeae]
 gi|86142521|gb|ABC86636.1| GIY endonuclease [Gibberella zeae]
          Length = 335

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 12/88 (13%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC------ 64
           GVY     +    YVG + NL  RI SY   +    +   ++   N   F  T       
Sbjct: 83  GVYVW--ESNDHAYVGHSINLYNRISSYFMPSILQTKARRVLRYFNKHGFQDTNLTIYIM 140

Query: 65  TEVEAL----LLEANMIKRLKPRFNILL 88
            E  +L     LE + I  LKP  N+ L
Sbjct: 141 DENSSLDDVVSLEQHFIDTLKPSLNVDL 168


>gi|218960602|ref|YP_001740377.1| transcription elongation factor NusA [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729259|emb|CAO80170.1| transcription elongation factor NusA [Candidatus Cloacamonas
           acidaminovorans]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +   S + E++G+ P     L Q+ + +V+ I  +S E L ++EG+ +K A ++   
Sbjct: 351 RRTVSHITELDGVTPKIAETLKQAGYTSVQDIYTASLEELCNLEGMGQKTAERLKEA 407


>gi|52550007|gb|AAU83856.1| recombinase [uncultured archaeon GZfos34G5]
          Length = 315

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +E+ G+GP     L ++ F +++ I+ +SP  L +   I +  + KI N 
Sbjct: 4   EELPGVGPAIAEKLREAGFNSLEAIAVASPAELVAAAEIGEATSAKIINA 53


>gi|51894262|ref|YP_076953.1| DNA integrity scanning protein DisA [Symbiobacterium thermophilum
           IAM 14863]
 gi|81387914|sp|Q67JP1|DISA_SYMTH RecName: Full=DNA integrity scanning protein disA
 gi|51857951|dbj|BAD42109.1| putative nucleic-acid-binding protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 351

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+  FG ++ +  +S E L  +EGI +  A  I     +
Sbjct: 299 IENLVARFGRLQRVLAASLEELDDVEGIGEVRARAIQEGLRR 340


>gi|328954004|ref|YP_004371338.1| DNA repair protein RadC [Desulfobacca acetoxidans DSM 11109]
 gi|328454328|gb|AEB10157.1| DNA repair protein RadC [Desulfobacca acetoxidans DSM 11109]
          Length = 230

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + LL  FG+   +  +S + L  ++G+ +  A  I
Sbjct: 54  KGLLSHFGSFAEVLDASHQELVKVKGLGEYSATLI 88


>gi|313884718|ref|ZP_07818474.1| comEA protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620086|gb|EFR31519.1| comEA protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 241

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 8/46 (17%)

Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599
           L  +  IGP +   ++      G+ +     S E L  + GI KK 
Sbjct: 191 LQTLPNIGPKKAEAIINYRQEIGSFQ-----SVEELIQVPGIGKKT 231


>gi|260495084|ref|ZP_05815213.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33]
 gi|260197527|gb|EEW95045.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  IG +  ++L ++   +  +   + E L SI+GI +  A +I   F K  + 
Sbjct: 537 GIAEIGKVTSKILAKASKNIDKLMTMTFEELTSIDGIGEIAANEIIAFFKKEKNQ 591


>gi|195149698|ref|XP_002015793.1| GL11250 [Drosophila persimilis]
 gi|194109640|gb|EDW31683.1| GL11250 [Drosophila persimilis]
          Length = 260

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LLQ+FG +  +  +S E L+ + G+  + A +++    +
Sbjct: 202 ALTNIKPVNKTDAVTLLQTFGNLGNVITASEERLSQVMGLGPRKAKRLFKTLQE 255


>gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205]
 gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205]
          Length = 899

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS--KKIACKIYNH 606
           L  I G+GP      + ++G V+ I  +  + +    G++  +++A  I NH
Sbjct: 195 LPGIPGVGPKTAAKWITTYGGVEGI-VARADEIKGKAGVNLRERLADVIRNH 245


>gi|71418519|ref|XP_810877.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70875476|gb|EAN89026.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 269

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             +G+V  +  +S E L S+ G   K A +++N  H
Sbjct: 176 HRYGSVAELLTASLEDLTSLPGFGPKRAGRLHNVLH 211


>gi|125807281|ref|XP_001360338.1| GA10163 [Drosophila pseudoobscura pseudoobscura]
 gi|54635510|gb|EAL24913.1| GA10163 [Drosophila pseudoobscura pseudoobscura]
          Length = 260

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       LLQ+FG +  +  +S E L+ + G+  + A +++    +
Sbjct: 202 ALTNIKPVNKTDAVTLLQTFGNLGNVITASEERLSQVMGLGPRKAKRLFKTLQE 255


>gi|329765876|ref|ZP_08257442.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137719|gb|EGG41989.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 709

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 547 KRRKKAAYSP----LD--EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI 599
             R++  Y      LD  ++ GIG +R R+L +    T+  ++      LA I+ I   I
Sbjct: 637 NLRRRITYGIREELLDLVKVKGIGRIRARMLYKHGIKTLDDLANIPVNKLAEIDKIGSTI 696

Query: 600 ACKIYNHFHK 609
           A  I +   K
Sbjct: 697 ADNIKSELRK 706


>gi|304316781|ref|YP_003851926.1| hypothetical protein Tthe_1328 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778283|gb|ADL68842.1| conserved hypothetical protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 386

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL+ I GIG +  + L    G+ + ++  +  E L     I +K+A  I + 
Sbjct: 318 PLEFIPGIGSITMKKLFNEVGSEIYILHEAPFEQLKEC--IGEKLAKNIIDA 367


>gi|86605509|ref|YP_474272.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
 gi|123765626|sp|Q2JW63|DNLJ_SYNJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|86554051|gb|ABC99009.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
          Length = 673

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G +  ++L Q F   ++++++  E +A I GI  +IA  +   F
Sbjct: 520 GIPHVGVVTAQILAQHFPAPELLAQARAEDIAQIYGIGAEIAEAVVAWF 568



 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +I G+G  R   L++  G  TV  + R +PE L S+EG+  + + K+     ++    
Sbjct: 454 DIEGLGEKRVAQLVEKLGVRTVADLYRLTPEHLESLEGMGSRSSQKLVQAIQRSRQQP 511


>gi|319947366|ref|ZP_08021599.1| competence protein CelA [Streptococcus australis ATCC 700641]
 gi|319746608|gb|EFV98868.1| competence protein CelA [Streptococcus australis ATCC 700641]
          Length = 260

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R + ++            S + L ++ GI +K   K+  H
Sbjct: 204 ATEAELQTISGIGQKRAQDIIAYREGKGKFQ--SVDELKNVSGIGQKTLEKLKEH 256


>gi|311104975|ref|YP_003977828.1| DNA repair protein RadC 2 [Achromobacter xylosoxidans A8]
 gi|310759664|gb|ADP15113.1| DNA repair protein RadC 2 [Achromobacter xylosoxidans A8]
          Length = 225

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 9/47 (19%)

Query: 559 EINGI-----GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            I G+     G      LL  FG ++ +  ++PE L ++ G+    A
Sbjct: 38  GIPGLDVVQLGS----QLLARFGGLRGLLGATPEELTAVPGLGAAKA 80


>gi|256028750|ref|ZP_05442584.1| preprotein translocase subunit SecA [Fusobacterium sp. D11]
 gi|289766653|ref|ZP_06526031.1| NAD-dependent DNA ligase [Fusobacterium sp. D11]
 gi|289718208|gb|EFD82220.1| NAD-dependent DNA ligase [Fusobacterium sp. D11]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  IG +  ++L ++   +  +   + E L SI+GI +  A +I   F K  + 
Sbjct: 537 GIAEIGKVTSKILAKASKNIDKLMTMTFEELTSIDGIGEIAANEIIAFFKKEKNQ 591


>gi|119605524|gb|EAW85118.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 4, isoform CRA_b [Homo sapiens]
          Length = 897

 Score = 43.9 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 833 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 888


>gi|329929819|ref|ZP_08283495.1| TIGR00375 family protein [Paenibacillus sp. HGF5]
 gi|328935797|gb|EGG32258.1| TIGR00375 family protein [Paenibacillus sp. HGF5]
          Length = 404

 Score = 43.6 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603
           PL+ I G+G      LL +FGT   I  +++   LA++ G  + +A  I
Sbjct: 335 PLEFIPGLGKSSMSKLLDAFGTEMNILHQATEAELAAVAG--EGLAASI 381


>gi|255004103|ref|ZP_05278904.1| excinuclease ABC subunit C (uvrC) [Anaplasma marginale str.
           Virginia]
          Length = 34

 Score = 43.6 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           + R+  + ++ + GIS K+A +IY +  +  +  
Sbjct: 1   MKRARTDEISKVPGISIKLAQRIYAYLKQGMAQP 34


>gi|261405981|ref|YP_003242222.1| hypothetical protein GYMC10_2134 [Paenibacillus sp. Y412MC10]
 gi|261282444|gb|ACX64415.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10]
          Length = 404

 Score = 43.6 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603
           PL+ I G+G      LL +FGT   I  +++   LA++ G  + +A  I
Sbjct: 335 PLEFIPGLGKSSMSKLLDAFGTEMNILHQATEAELAAVAG--EGLAASI 381


>gi|168187709|ref|ZP_02622344.1| DNA integrity scanning protein DisA [Clostridium botulinum C str.
           Eklund]
 gi|169294434|gb|EDS76567.1| DNA integrity scanning protein DisA [Clostridium botulinum C str.
           Eklund]
          Length = 355

 Score = 43.6 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           F  +K +  +S E L ++EGI +  A  I N   +
Sbjct: 310 FKELKEVMEASYEELDNVEGIGEARAKAIKNGLRR 344


>gi|167461185|ref|ZP_02326274.1| YqxK [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381744|ref|ZP_08055698.1| hypothetical protein PL1_0444 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154132|gb|EFX46454.1| hypothetical protein PL1_0444 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 397

 Score = 43.6 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKIY 604
           PL+ I G+G  +   LL  FGT   I   +  + L  + G  + IA  I+
Sbjct: 324 PLEFIPGLGKRKMAALLNHFGTEMNILHEAREQDLVHVAG--QDIAHMIH 371


>gi|159027634|emb|CAO87006.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 382

 Score = 43.6 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            I G+G +  + L Q FG+V +   ++   +A + G  KK
Sbjct: 13  SIAGVGAISLKRLYQHFGSVAVAWNATDSAIAEVAGFGKK 52


>gi|303238350|ref|ZP_07324885.1| DNA integrity scanning, DisA, linker region [Acetivibrio
           cellulolyticus CD2]
 gi|302594054|gb|EFL63767.1| DNA integrity scanning, DisA, linker region [Acetivibrio
           cellulolyticus CD2]
          Length = 360

 Score = 43.6 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L +I  +     + L+  F   + I  ++ + L  +EGI +  A  I     +
Sbjct: 296 LSKIPRVPLTIIKNLVDRFLNFQGIINATIDELDEVEGIGEVRARMIKEGLRR 348


>gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
 gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
          Length = 874

 Score = 43.6 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL+ FGTV+ +     E+L  + G       K+     +N  + 
Sbjct: 191 GVPGVGEKTALKLLKQFGTVEKLY----ESLEDVSG------KKLKEKLAENKDNA 236


>gi|251811006|ref|ZP_04825479.1| competence protein comEA [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805516|gb|EES58173.1| competence protein comEA [Staphylococcus epidermidis BCM-HMP0060]
          Length = 224

 Score = 43.6 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  I GIGP + + +L        F ++        + L  I+G  KK   K+  
Sbjct: 169 ATEEQLKNIPGIGPSKAKEILNYREQNHGFNSI--------DDLMKIKGFGKKTFEKLKE 220

Query: 606 HF 607
           HF
Sbjct: 221 HF 222


>gi|218248480|ref|YP_002373851.1| Excinuclease ABC subunit C domain-containing protein [Cyanothece
          sp. PCC 8801]
 gi|218168958|gb|ACK67695.1| Excinuclease ABC C subunit domain protein [Cyanothece sp. PCC
          8801]
          Length = 348

 Score = 43.6 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 4  EQMPECPGVYQMLDIAGRVLYVGKAYNLQKR 34
          +Q+P   G+Y +LD +  V Y+G+A NLQ R
Sbjct: 20 DQLPSSSGIYYVLDESNIVWYIGQAKNLQSR 50


>gi|157363654|ref|YP_001470421.1| DNA integrity scanning protein DisA [Thermotoga lettingae TMO]
 gi|157314258|gb|ABV33357.1| protein of unknown function DUF147 [Thermotoga lettingae TMO]
          Length = 350

 Score = 43.6 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           ++F  +K+IS +S + L S++GI +K A  I
Sbjct: 308 KTFKNLKIISEASIDELQSVDGIGEKRALAI 338


>gi|29839888|ref|NP_828994.1| Holliday junction DNA helicase motor protein [Chlamydophila caviae
           GPIC]
 gi|33301629|sp|Q824M5|RUVA_CHLCV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|29834235|gb|AAP04872.1| Holliday junction DNA helicase RuvA [Chlamydophila caviae GPIC]
          Length = 207

 Score = 43.6 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACK 602
            RR++  +  L   +G+GP     +L +F ++     I+R+     +AS+ GI KK A K
Sbjct: 66  SRRERECFRMLISFSGVGPKTGLAILNTF-SLSKLCSIARAEDVRAIASVPGIGKKTAEK 124

Query: 603 I 603
           +
Sbjct: 125 L 125


>gi|283953656|ref|ZP_06371187.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 414]
 gi|283794697|gb|EFC33435.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 414]
          Length = 79

 Score = 43.6 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYN 605
           A    L  +NGIG  + + +L+          +   S + +  ++GI  K+  KI N
Sbjct: 24  ATLKELKGLNGIGEAKAKAILEY------RKEANFTSIDDIKKVQGIGDKLFEKIKN 74


>gi|299822871|ref|ZP_07054757.1| competence protein CelA [Listeria grayi DSM 20601]
 gi|299816400|gb|EFI83638.1| competence protein CelA [Listeria grayi DSM 20601]
          Length = 198

 Score = 43.6 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 42/184 (22%)

Query: 429 AMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNV 488
           A      +   + ++  +  ++     Q        D+V L GG  Q +  + +     +
Sbjct: 49  AAESETPKSSKTIVVDIKGAVSKPGVYQVAKDARVQDLVHLAGGVNQTADMKQINLAAKL 108

Query: 489 ENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKR 548
           ++  +I  IAK  + +   +    +K + + +N        +Q                 
Sbjct: 109 KDEESIY-IAKIGEIAEQTDTDKQRKDDTVNINTAS-----LQ----------------- 145

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS-----PETLASIEGISKKIACKI 603
                   L  I G+GP + + +L+          S+      E L +I G  +K   ++
Sbjct: 146 -------ELQGIPGVGPAKAQAILEY-------RESTGLFQKVEDLKNISGFGEKTIERL 191

Query: 604 YNHF 607
            N  
Sbjct: 192 KNFI 195


>gi|225573022|ref|ZP_03781777.1| hypothetical protein RUMHYD_01213 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039619|gb|EEG49865.1| hypothetical protein RUMHYD_01213 [Blautia hydrogenotrophica DSM
           10507]
          Length = 742

 Score = 43.6 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIGP     +++ FG  TV+++    PE L+ ++GIS+K A +I
Sbjct: 89  IKGIGPALAARIVKKFGEETVRIVEE-EPERLSEVKGISEKKAQEI 133


>gi|307152955|ref|YP_003888339.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 7822]
 gi|306983183|gb|ADN15064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7822]
          Length = 682

 Score = 43.6 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G +  ++L  +F TV+ +SR+S  +L S+ GI  +IA  + + F    + T
Sbjct: 525 VGNVTAKILTDNFPTVEQLSRASFASLESVYGIGSEIAQSVSDWFKIEANLT 576


>gi|27468194|ref|NP_764831.1| hypothetical protein SE1276 [Staphylococcus epidermidis ATCC 12228]
 gi|57867052|ref|YP_188733.1| comE operon protein 1 [Staphylococcus epidermidis RP62A]
 gi|27315740|gb|AAO04875.1|AE016748_109 ComEA [Staphylococcus epidermidis ATCC 12228]
 gi|57637710|gb|AAW54498.1| comE operon protein 1, putative [Staphylococcus epidermidis RP62A]
          Length = 224

 Score = 43.6 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  I GIGP + + +L        F ++        + L  I+G  KK   K+  
Sbjct: 169 ATEEQLKNIPGIGPSKAKEILNYREQNHGFNSI--------DDLMKIKGFGKKTFEKLKE 220

Query: 606 HF 607
           HF
Sbjct: 221 HF 222


>gi|315641089|ref|ZP_07896168.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
 gi|315483097|gb|EFU73614.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
          Length = 671

 Score = 43.6 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 552 AAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +  + L++      I  +G    +LL + F T+  +S+++ E + ++  I   IA  +  
Sbjct: 497 SKQNSLEKLLFGLGIRHVGVKAAKLLAERFETLTQLSQATVEEILTVATIGPTIADSLVT 556

Query: 606 HFHKNT 611
           +F    
Sbjct: 557 YFANEE 562


>gi|158260475|dbj|BAF82415.1| unnamed protein product [Homo sapiens]
          Length = 916

 Score = 43.6 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 852 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 907


>gi|119467270|ref|XP_001257441.1| DNA repair protein RAD1, putative [Neosartorya fischeri NRRL 181]
 gi|119405593|gb|EAW15544.1| DNA repair protein RAD1, putative [Neosartorya fischeri NRRL 181]
          Length = 975

 Score = 43.6 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           L  + G+ P     L+   G +  I+    E L     I ++ A KI   F KN
Sbjct: 919 LRAVPGVTPKVLERLILEMGNISEIANMDVEQLD--PLIGREAARKIVGFFRKN 970


>gi|118443584|ref|YP_877173.1| DNA integrity scanning protein DisA [Clostridium novyi NT]
 gi|118134040|gb|ABK61084.1| Domain of unknown function DUF147 family protein [Clostridium novyi
           NT]
          Length = 355

 Score = 43.6 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           F  +K +  +S E L ++EGI +  A  I N   +
Sbjct: 310 FKELKEVMEASYEELDNVEGIGEARAKAIKNGLRR 344


>gi|4885217|ref|NP_005227.1| DNA repair endonuclease XPF [Homo sapiens]
 gi|229463004|sp|Q92889|XPF_HUMAN RecName: Full=DNA repair endonuclease XPF; AltName: Full=DNA
           excision repair protein ERCC-4; AltName: Full=DNA repair
           protein complementing XP-F cells; AltName:
           Full=Xeroderma pigmentosum group F-complementing protein
 gi|19550957|gb|AAL91593.1|AF491814_1 excision repair cross-complementing rodent repair deficiency,
           complementation group 4 [Homo sapiens]
 gi|1905924|gb|AAB50174.1| DNA repair protein [Homo sapiens]
 gi|119605523|gb|EAW85117.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 4, isoform CRA_a [Homo sapiens]
 gi|182887847|gb|AAI60102.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 4 [synthetic construct]
          Length = 916

 Score = 43.6 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 852 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 907


>gi|325977805|ref|YP_004287521.1| competence protein ComEA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177733|emb|CBZ47777.1| competence protein ComEA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 221

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604
           A  + L  I+GIG  R + ++           +     S + LA++ GI +K   K+ 
Sbjct: 165 ATLAELQTISGIGAKRAQDIIDY-------RDANGGFSSVDDLANVSGIGEKTLEKLK 215


>gi|306830922|ref|ZP_07464084.1| competence protein CelA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426945|gb|EFM30055.1| competence protein CelA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 221

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604
           A  + L  I+GIG  R + ++           +     S + LA++ GI +K   K+ 
Sbjct: 165 ATLAELQTISGIGAKRAQDIIDY-------RDANGGFSSVDDLANVSGIGEKTLEKLK 215


>gi|306833039|ref|ZP_07466171.1| competence protein CelA [Streptococcus bovis ATCC 700338]
 gi|304424938|gb|EFM28072.1| competence protein CelA [Streptococcus bovis ATCC 700338]
          Length = 221

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604
           A  + L  I+GIG  R + ++           +     S + LA++ GI +K   K+ 
Sbjct: 165 ATLAELQTISGIGAKRAQDIIDY-------RDANGGFSSVDDLANVSGIGEKTLEKLK 215


>gi|288904870|ref|YP_003430092.1| exogenous DNA-binding protein [Streptococcus gallolyticus UCN34]
 gi|288731596|emb|CBI13151.1| putative exogenous DNA-binding protein [Streptococcus gallolyticus
           UCN34]
          Length = 221

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604
           A  + L  I+GIG  R + ++           +     S + LA++ GI +K   K+ 
Sbjct: 165 ATLAELQTISGIGAKRAQDIIDY-------RDANGGFSSVDDLANVSGIGEKTLEKLK 215


>gi|269119219|ref|YP_003307396.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386]
 gi|268613097|gb|ACZ07465.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386]
          Length = 669

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 547 KRR--KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+R   K  YS    I  +G     LL + F  +  +     E L  ++GI  K+A  + 
Sbjct: 503 KKREYSKVLYS--LGIPFVGKFTANLLAKEFLNIDNLKSKETEDLLEVKGIGDKVAKSVN 560

Query: 605 NHFHKNTS 612
              +   +
Sbjct: 561 MFLNDENN 568


>gi|229823252|ref|ZP_04449321.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
 gi|229787418|gb|EEP23532.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
          Length = 671

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    RL+LQ FG +  +S+++ E + +IEG+   I+  +  +    +S  
Sbjct: 513 GIRHVGAKAARLVLQVFGDLNRLSQATAEEIGAIEGVGPIISQSLVQYLTLESSQA 568


>gi|218883878|ref|YP_002428260.1| GIYc domain containing protein [Desulfurococcus kamchatkensis
          1221n]
 gi|218765494|gb|ACL10893.1| GIYc domain containing protein [Desulfurococcus kamchatkensis
          1221n]
          Length = 148

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 17/48 (35%)

Query: 6  MPECPGVY----------------QMLDIAGRVLYVGKAYNLQKRIKS 37
          +PE  GVY                + LD  G VLY+G A NL++R+++
Sbjct: 21 VPERAGVYVVFWAKNGKPVAIPRIRCLDEKG-VLYIGSAKNLRQRVRN 67


>gi|114661075|ref|XP_510831.2| PREDICTED: DNA repair endonuclease XPF [Pan troglodytes]
          Length = 916

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 852 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 907


>gi|1524411|gb|AAB07689.1| DNA repair endonuclease subunit [Homo sapiens]
          Length = 905

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 841 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 896


>gi|324990610|gb|EGC22546.1| competence protein CelA [Streptococcus sanguinis SK353]
          Length = 239

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           A  + L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 183 ATEAELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 235


>gi|298370545|ref|ZP_06981861.1| DNA topoisomerase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282005|gb|EFI23494.1| DNA topoisomerase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 102

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 18/70 (25%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L+ + GIGP + + ++        F         + E L  ++GI       I++
Sbjct: 32  ATAAELEALPGIGPAKAKAIVAYRQQNGQFK--------TVEDLKKVKGIG----EGIFS 79

Query: 606 HFHKNTSHTP 615
                 S  P
Sbjct: 80  KLKDEASVAP 89


>gi|254168485|ref|ZP_04875329.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
 gi|197622540|gb|EDY35111.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
          Length = 694

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           F +++ + +++  TL  I GI +K+A +I  
Sbjct: 661 FDSIEKLKKANVSTLMRIPGIGRKLAEEILK 691


>gi|46447399|ref|YP_008764.1| putative DNA repair protein radC [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81697594|sp|Q6MAB0|Y1765_PARUW RecName: Full=UPF0758 protein pc1765
 gi|46401040|emb|CAF24489.1| putative DNA repair protein radC [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 231

 Score = 43.6 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R L+  FG ++ + +++   L  ++GI    A ++    +
Sbjct: 53  RALVTRFGGLEALMQATLTELLEVQGIGFAKAIQLKAALN 92


>gi|329891298|ref|ZP_08269641.1| DNA repair protein RadC family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328846599|gb|EGF96163.1| DNA repair protein RadC family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 243

 Score = 43.6 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 10/50 (20%)

Query: 569 RLLLQSFGTVKMISRSSPETLASI---------EGISKKIACKIYNHFHK 609
           + LL  FG++  +  +S E L ++         +G+  + A  +    H+
Sbjct: 58  KALLTRFGSLAAVLAASVEDLMTVRAEDSRGRSKGVGAETALDL-AALHE 106


>gi|281358694|ref|ZP_06245171.1| helicase, RecD/TraA family [Victivallis vadensis ATCC BAA-548]
 gi|281314820|gb|EFA98856.1| helicase, RecD/TraA family [Victivallis vadensis ATCC BAA-548]
          Length = 734

 Score = 43.6 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 560 INGIGPLRKRLLLQSFGT-----VKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           I GIG     L++  FG      +   ++     L  + GI KK A  +   + ++  
Sbjct: 97  IPGIGKKTASLIVDYFGDQTLVVLDNFAK----RLEEVPGIGKKKAAAVVKGWRESAG 150


>gi|282900736|ref|ZP_06308678.1| SMF protein [Cylindrospermopsis raciborskii CS-505]
 gi|281194536|gb|EFA69491.1| SMF protein [Cylindrospermopsis raciborskii CS-505]
          Length = 375

 Score = 43.6 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +I G+GP+  + L + FG ++   +SSP  L  IEG+   I  KI  +
Sbjct: 16  QIAGVGPILLQRLQEHFGNLENAWKSSPGELGKIEGVGFHILQKIVQY 63


>gi|158339743|ref|YP_001520750.1| RecD/TraA family helicase [Acaryochloris marina MBIC11017]
 gi|158309984|gb|ABW31600.1| helicase, RecD/TraA family [Acaryochloris marina MBIC11017]
          Length = 753

 Score = 43.6 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I G+GP+  + ++  FG  T+ +I     + L+ + GI+KK    I
Sbjct: 95  KYLGSGL--IKGVGPVTAKRIVAHFGLDTLDIIEH-HIDRLSEVPGIAKKRVKMI 146


>gi|296331680|ref|ZP_06874149.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675361|ref|YP_003867033.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151275|gb|EFG92155.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413605|gb|ADM38724.1| Holliday junction DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 201

 Score = 43.6 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT------VKMISRSS 585
            +R++A  F++     R +KA ++ L  + GIGP     +L   G+      ++ I    
Sbjct: 49  HIREDA--FSLYGFSTREEKALFTKLLNVTGIGPKGALAIL---GSGDPGAVIQAIENED 103

Query: 586 PETLASIEGISKKIACKI 603
              L    G+ KK A +I
Sbjct: 104 EAFLVKFPGVGKKTARQI 121


>gi|293400457|ref|ZP_06644602.1| competence protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305483|gb|EFE46727.1| competence protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 156

 Score = 43.6 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    LD + GIGP   + +++     K ++  + E L  ++GI  K+  KI  H 
Sbjct: 102 ATLEELDTLPGIGPSIAQRIVEY---RKQMAFQTLEDLKQVKGIGDKLFDKIKEHI 154



 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 581 ISRSSPETLASIEGISKKIACKIYNH 606
           I+ ++ E L ++ GI   IA +I  +
Sbjct: 99  INAATLEELDTLPGIGPSIAQRIVEY 124


>gi|284176326|ref|YP_003406602.1| hypothetical protein Htur_5041 [Haloterrigena turkmenica DSM 5511]
 gi|284017983|gb|ADB63929.1| hypothetical protein Htur_5041 [Haloterrigena turkmenica DSM 5511]
          Length = 122

 Score = 43.6 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 27/55 (49%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA    ++++NG+   R + + + + ++  +  S    L  + GI +++A  +  
Sbjct: 63  KAIRLVVEDVNGVSESRSKAIAREYESLDELRASDRARLEVVPGIGEELAAAVLE 117


>gi|302342564|ref|YP_003807093.1| DNA protecting protein DprA [Desulfarculus baarsii DSM 2075]
 gi|301639177|gb|ADK84499.1| DNA protecting protein DprA [Desulfarculus baarsii DSM 2075]
          Length = 376

 Score = 43.6 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           I G+G +    LL +FG       +  E L+++ G+ + +A  I
Sbjct: 24  IPGVGGVTFARLLDAFGRPGRALGAPLEALSAVPGLRRTLAEAI 67


>gi|6967038|emb|CAB72450.1| I-PcI endonuclease [Podospora curvicolla]
          Length = 313

 Score = 43.6 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 15/91 (16%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMI----SQINNIR-FTVT 63
             G+Y   +      YVG   +L+KR+ +Y +S+    R   MI       +    FT+ 
Sbjct: 107 KSGIYLWTNKINGKRYVGSRLDLRKRLLNYFNSSYLLDRKDIMIIYKALLAHGFENFTL- 165

Query: 64  CTEV----EALLL---EANMIKRLKPRFNIL 87
             E+    EA +L   E   I  L P +NIL
Sbjct: 166 --EILEYCEASVLIEREQYYIDLLNPEYNIL 194


>gi|15679750|ref|NP_276868.1| DNA mismatch recognition protein MutS [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622891|gb|AAB86228.1| DNA mismatch recognition protein MutS [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 647

 Score = 43.6 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKIYNHF 607
            L E+ GIG    R ++  FG     ++ +     + L +IEGIS++ A +I N  
Sbjct: 11  ILTEVGGIGERLARKIIDEFGGEDELLRAVKNLEIDRLVAIEGISQRRAIEIANKL 66


>gi|241895534|ref|ZP_04782830.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides
           ATCC 33313]
 gi|241871112|gb|EER74863.1| Holliday junction DNA helicase RuvA [Weissella paramesenteroides
           ATCC 33313]
          Length = 196

 Score = 43.6 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +  K  +  L  ++GIGP     +L      G +  I+++    L    GI KK A +I
Sbjct: 63  KEDKDLFQKLLNVSGIGPKSALAILANSDHTGLINAITQNDIGFLTKFPGIGKKTAQQI 121


>gi|229014986|ref|ZP_04172066.1| hypothetical protein bmyco0001_53630 [Bacillus mycoides DSM 2048]
 gi|228746298|gb|EEL96221.1| hypothetical protein bmyco0001_53630 [Bacillus mycoides DSM 2048]
          Length = 73

 Score = 43.6 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 19 AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIK 78
             +L+VGKA  +++RIK +   N    +      ++  I   +    +E  + E  MI 
Sbjct: 2  NDELLFVGKARKVRQRIKKHFEDNVSPIKNHR--DEVYCIDVCIVEDPMEREIYETYMIN 59

Query: 79 RLKPRFNI 86
            + ++N+
Sbjct: 60 EFQAKYNV 67


>gi|164687114|ref|ZP_02211142.1| hypothetical protein CLOBAR_00740 [Clostridium bartlettii DSM
           16795]
 gi|164603999|gb|EDQ97464.1| hypothetical protein CLOBAR_00740 [Clostridium bartlettii DSM
           16795]
          Length = 742

 Score = 43.6 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I+GIG      +++ FG  T+ +I   +PE L  +EGI  K   +I   + +N
Sbjct: 88  IHGIGEKMATRIIEKFGVDTLDVIQN-TPERLKEVEGIGSKKIKQITESYEEN 139


>gi|226442650|ref|NP_001140125.1| DNA excision repair protein ERCC-1 [Salmo salar]
 gi|221220050|gb|ACM08686.1| DNA excision repair protein ERCC-1 [Salmo salar]
          Length = 383

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL +F +++ I  ++ E L    G+  + A ++Y+  H+
Sbjct: 335 LLSTFSSLEGIITAAKEDLVLCPGLGPQKARRLYDVLHQ 373


>gi|220905659|ref|YP_002480970.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7425]
 gi|219862270|gb|ACL42609.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7425]
          Length = 740

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I G+GP+  + ++  FG  T++ I  +  E L  + GI++K    I
Sbjct: 91  KYLGSGL--IKGVGPVTAKRIVAHFGLETLE-IIETQIERLTEVPGIARKRVRLI 142


>gi|297717812|gb|ADI50049.1| DNA ligase [Candidatus Odyssella thessalonicensis L13]
          Length = 676

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 12/62 (19%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPE-----------TLASIEGISKKIACKIYNHF 607
            I  +G +  +LL + + T+  +   + +            L S++GI K +A  I + F
Sbjct: 513 GIPQVGSVTAKLLARHYHTLPNLLN-TLQQAQDPTTDAYVDLLSLDGIGKNMAEDILSFF 571

Query: 608 HK 609
           H+
Sbjct: 572 HE 573


>gi|288559840|ref|YP_003423326.1| DNA mismatch repair ATPase MutS family [Methanobrevibacter
           ruminantium M1]
 gi|288542550|gb|ADC46434.1| DNA mismatch repair ATPase MutS family [Methanobrevibacter
           ruminantium M1]
          Length = 644

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACKIYNHF 607
           S L  I GIG    + +L + G  +     I+    E L  IEGIS++ A +I N  
Sbjct: 4   SELQNIKGIGDKLSQKILLNLGGEEELNRVINELDLERLIQIEGISQRKAIEIMNQL 60


>gi|229525582|ref|ZP_04414987.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
 gi|229339163|gb|EEO04180.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
          Length = 669

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F +++ I ++S E    +  +   +A  +   F ++ +  
Sbjct: 520 VGEATAFNLAQHFLSLEAIQQASLEQFIEVPDVGVIVASHLQAFFAQDRNQQ 571


>gi|194333271|ref|YP_002015131.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
 gi|254781391|sp|B4S4Y6|DNLJ_PROA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|194311089|gb|ACF45484.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
          Length = 675

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   R R  +     L  I  +G    R L  ++ ++ +++ ++ E L+ +  I   IA
Sbjct: 506 AIEKSRTREYERVLYAL-GIRHVGLATARELAAAYHSIDLLASAALEELSCVADIGPVIA 564

Query: 601 CKIYNHFHKNTS 612
             +++ F    +
Sbjct: 565 QSVHDFFRNPDA 576


>gi|281212695|gb|EFA86855.1| BRCT domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1835

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 555 SPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           S L    I G G  R + L +SF T   +S +S E + +   +      ++Y+ FH 
Sbjct: 617 SVLCALGIPGFGKSRCKTLAKSFKTFDQLSNTSLEDITNRVQLGDLTTYQLYSFFHP 673


>gi|262066346|ref|ZP_06025958.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693]
 gi|291379910|gb|EFE87428.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693]
          Length = 696

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  IG +  ++L ++   +  +   + E L +IEGI +  A +I   F K  + 
Sbjct: 537 GIPFIGKVASKVLAKASKNIDKLMSMTFEELTAIEGIGEIAANEIIAFFKKEKTQ 591


>gi|126662793|ref|ZP_01733792.1| Smf protein DNA processing chain A [Flavobacteria bacterium BAL38]
 gi|126626172|gb|EAZ96861.1| Smf protein DNA processing chain A [Flavobacteria bacterium BAL38]
          Length = 358

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++ G+G +  + L+Q FG  + +  S+   L  I+GI   +   + +
Sbjct: 2   QVEGVGDVIAKKLIQHFGNAEEVFASNKSQLQKIDGIGSVLIKNLQD 48


>gi|16079826|ref|NP_390652.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310713|ref|ZP_03592560.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315037|ref|ZP_03596842.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319958|ref|ZP_03601252.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324239|ref|ZP_03605533.1| Holliday junction DNA helicase RuvA [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312303|ref|YP_004204590.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5]
 gi|3183558|sp|O05392|RUVA_BACSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|2635239|emb|CAB14734.1| Holliday junction DNA helicase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|6977805|emb|CAB75330.1| RuvA protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485185|dbj|BAI86260.1| Holliday junction DNA helicase motor protein [Bacillus subtilis
           subsp. natto BEST195]
 gi|320018577|gb|ADV93563.1| Holliday junction DNA helicase RuvA [Bacillus subtilis BSn5]
          Length = 201

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT------VKMISRSS 585
            +R++A  F++     R +KA ++ L  + GIGP     +L   G+      ++ I    
Sbjct: 49  HIREDA--FSLYGFSTREEKALFTKLLNVTGIGPKGALAIL---GSGDPGAVIQAIENED 103

Query: 586 PETLASIEGISKKIACKI 603
              L    G+ KK A +I
Sbjct: 104 EAFLVKFPGVGKKTARQI 121


>gi|332884007|gb|EGK04287.1| DNA ligase [Dysgonomonas mossii DSM 22836]
          Length = 665

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L  +F  + ++  ++ E L  ++ I  +IA  I  +F
Sbjct: 515 VGETVAKKLALAFPDIDLLQAATIEDLTQVDEIGDRIAQSIVKYF 559


>gi|301058272|ref|ZP_07199312.1| DNA protecting protein DprA [delta proteobacterium NaphS2]
 gi|300447606|gb|EFK11331.1| DNA protecting protein DprA [delta proteobacterium NaphS2]
          Length = 369

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           I G+G +  + L + F  V+ I ++    L  +EG+ K +A KI +
Sbjct: 17  IPGLGNVVLKRLYERFLDVEAIFQADFFDLMGVEGLRKGVAGKILD 62


>gi|291276652|ref|YP_003516424.1| Holliday junction DNA helicase [Helicobacter mustelae 12198]
 gi|290963846|emb|CBG39682.1| holliday junction DNA helicase [Helicobacter mustelae 12198]
          Length = 184

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 22/107 (20%)

Query: 509 KFFVKKGEALVLNMRDPILYFI-QRLRDEAHRFAITTHRKR-------RKKAAYSPLDEI 560
           +  +  G A  L  ++  L +I Q +R++AH                  +K  +  L +I
Sbjct: 27  EIHISFGSAEELQGKEEALVYISQIIREDAH---------LLFGFVTPMEKQIFDTLIKI 77

Query: 561 NGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACKI 603
           NG+GP     +L +F + +     I R     L  + G+  K A KI
Sbjct: 78  NGVGPKVALAILSTF-SAQEFMAVIERKDIAALQKVPGVGTKSAGKI 123


>gi|330465518|ref|YP_004403261.1| hypothetical protein VAB18032_07705 [Verrucosispora maris
          AB-18-032]
 gi|328808489|gb|AEB42661.1| hypothetical protein VAB18032_07705 [Verrucosispora maris
          AB-18-032]
          Length = 237

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 11 GVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHM--ISQINNIR 59
          G Y   D  G  +YVG+    L+ R++ ++ +         +  + ++  + 
Sbjct: 22 GCYAFYDYDGEPIYVGQTNERLRARVRRHLTNQRTDAVAMRILDVFEVAEME 73


>gi|310644240|ref|YP_003948999.1| DNA ligase, nad-dependent [Paenibacillus polymyxa SC2]
 gi|309249191|gb|ADO58758.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
          Length = 671

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K +++   S L    I   G    R+L + +  +     ++ + L  +  +   +A  I 
Sbjct: 500 KSKERDLASFLYALGIPNTGKATTRMLAEHYRDLHKTMSATVDELIELPDVGGIVAESIV 559

Query: 605 NHF 607
             F
Sbjct: 560 AFF 562


>gi|325981222|ref|YP_004293624.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp.
           AL212]
 gi|325530741|gb|ADZ25462.1| Holliday junction ATP-dependent DNA helicase ruvA [Nitrosomonas sp.
           AL212]
          Length = 193

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKIYN 605
           +  +  L +I+GIG      LL   G +V  +  + S +    L  + GI KK A ++  
Sbjct: 69  RQTFRQLIKISGIGARTALALLS--GLSVADLHHAVSIQDSARLVKVPGIGKKTAERLLL 126

Query: 606 HFH 608
              
Sbjct: 127 ELR 129


>gi|213966177|ref|ZP_03394363.1| DNA-binding protein [Corynebacterium amycolatum SK46]
 gi|213951192|gb|EEB62588.1| DNA-binding protein [Corynebacterium amycolatum SK46]
          Length = 265

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 14/61 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+ + L+E+ GIGP     ++        F        +S + L  + GI       + +
Sbjct: 210 ASATQLEELPGIGPATATKIIDFREKNGAF--------ASIDALEEVPGIGPAKVEALRD 261

Query: 606 H 606
            
Sbjct: 262 A 262


>gi|194377974|dbj|BAG63350.1| unnamed protein product [Homo sapiens]
          Length = 466

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 402 LLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFAE 457


>gi|166363019|ref|YP_001655292.1| SMF family DNA processing protein [Microcystis aeruginosa NIES-843]
 gi|166085392|dbj|BAG00100.1| SMF family DNA processing protein [Microcystis aeruginosa NIES-843]
          Length = 382

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
            I G+G +  + L Q FG+V +   ++   +A + G  KK+
Sbjct: 13  SIAGVGSISLKRLYQHFGSVAVAWNATDTAIAEVAGFGKKL 53


>gi|258645584|ref|ZP_05733053.1| helicase, RecD/TraA family [Dialister invisus DSM 15470]
 gi|260402942|gb|EEW96489.1| helicase, RecD/TraA family [Dialister invisus DSM 15470]
          Length = 709

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
             S L  I+GIGP   + ++Q FG  T++ I   + + L+ + GI +K   +I + +
Sbjct: 86  LASGL--ISGIGPSMAKRIVQHFGKKTLE-IFERNIDALSEVSGIGQKTLERIKDSY 139


>gi|311743698|ref|ZP_07717504.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
 gi|311312828|gb|EFQ82739.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
          Length = 182

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 12 VYQMLDIAGRVLYVGKAYNLQKRIKSY 38
          VY+  D  GR++YVG   NL  R+  +
Sbjct: 12 VYRCFDQDGRLIYVGSTANLPNRLAQH 38


>gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1]
 gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1]
          Length = 875

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ FGT++ +   S + ++      KK+  K+  H
Sbjct: 192 GVPGVGEKTAIKLLKQFGTIEKLLE-SIDEVS-----GKKLKEKLEEH 233


>gi|237739847|ref|ZP_04570328.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31]
 gi|229423455|gb|EEO38502.1| NAD-dependent DNA ligase [Fusobacterium sp. 2_1_31]
          Length = 594

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  IG +  ++L ++   +  +   + E L SIEGI +  A +I   F K  + 
Sbjct: 435 GIPFIGKVASKVLAKASKNIDKLMSMTFEELTSIEGIGEIAANEIIAFFKKEKTQ 489


>gi|126697594|ref|YP_001086491.1| DNA integrity scanning protein DisA [Clostridium difficile 630]
 gi|254973679|ref|ZP_05270151.1| DNA integrity scanning protein DisA [Clostridium difficile
           QCD-66c26]
 gi|255091071|ref|ZP_05320549.1| DNA integrity scanning protein DisA [Clostridium difficile CIP
           107932]
 gi|255099186|ref|ZP_05328163.1| DNA integrity scanning protein DisA [Clostridium difficile
           QCD-63q42]
 gi|255312724|ref|ZP_05354307.1| DNA integrity scanning protein DisA [Clostridium difficile
           QCD-76w55]
 gi|255515485|ref|ZP_05383161.1| DNA integrity scanning protein DisA [Clostridium difficile
           QCD-97b34]
 gi|255648577|ref|ZP_05395479.1| DNA integrity scanning protein DisA [Clostridium difficile
           QCD-37x79]
 gi|260681797|ref|YP_003213082.1| DNA integrity scanning protein DisA [Clostridium difficile CD196]
 gi|260685394|ref|YP_003216527.1| DNA integrity scanning protein DisA [Clostridium difficile R20291]
 gi|306518706|ref|ZP_07405053.1| DNA integrity scanning protein DisA [Clostridium difficile
           QCD-32g58]
 gi|123174660|sp|Q18CB2|DISA_CLOD6 RecName: Full=DNA integrity scanning protein disA
 gi|115249031|emb|CAJ66842.1| DNA integrity scanning protein disA [Clostridium difficile]
 gi|260207960|emb|CBA60092.1| putative DNA-binding protein [Clostridium difficile CD196]
 gi|260211410|emb|CBE01492.1| putative DNA-binding protein [Clostridium difficile R20291]
          Length = 356

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 39/140 (27%)

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           +    ++      +K LN E  I ++++AK           +    E++ + ++      
Sbjct: 241 NKENTEIKELMKKVKNLNSEELIELVNMAKLLG--------YSGFSESMDMPIKTRGYRI 292

Query: 530 IQRLRDEAHRF--AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           + ++    HR   AI                            L+  F   + I  +S E
Sbjct: 293 LSKI----HRLPTAI-------------------------IENLVNYFENFQQILDASIE 323

Query: 588 TLASIEGISKKIACKIYNHF 607
            L  +EGI +  A  I N  
Sbjct: 324 ELDEVEGIGEIRATYIKNGL 343


>gi|257869253|ref|ZP_05648906.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
 gi|257803417|gb|EEV32239.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
          Length = 676

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    R+L + +  ++ +S++    + S+E I + IA  +  +F+   
Sbjct: 513 GIRHVGSKAARILAEHYRNLRNLSKADESEIVSLETIGQTIADSVVTYFNNEE 565


>gi|242373894|ref|ZP_04819468.1| competence protein comEA [Staphylococcus epidermidis M23864:W1]
 gi|242348448|gb|EES40050.1| competence protein comEA [Staphylococcus epidermidis M23864:W1]
          Length = 228

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            A  S L  + GIGP + + ++      G    I     + L  I+G  +K   K+  +F
Sbjct: 172 NATESELKGVPGIGPTKAKEIINYREQNGRFDKI-----DDLKKIKGFGEKTFEKLKEYF 226


>gi|313124902|ref|YP_004035166.1| DNA repair and recombination protein rada [Halogeometricum
           borinquense DSM 11551]
 gi|312291267|gb|ADQ65727.1| DNA repair and recombination protein RadA [Halogeometricum
           borinquense DSM 11551]
          Length = 343

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L+ + G+GP     L  + F + + I+ +SP  L++   + +  +  I N   +   
Sbjct: 6   LESLPGVGPATADKLTDAGFESYQAIAVASPSELSNTADVGESTSSDIINAAREAAD 62


>gi|261401085|ref|ZP_05987210.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
 gi|269208977|gb|EEZ75432.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
          Length = 827

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FG+++ + R+    LA +  I   +A  I + F +     
Sbjct: 592 GIRHVGERTAKTLAQAFGSLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 647


>gi|149914799|ref|ZP_01903329.1| Helicase RecD/TraA [Roseobacter sp. AzwK-3b]
 gi|149811592|gb|EDM71427.1| Helicase RecD/TraA [Roseobacter sp. AzwK-3b]
          Length = 723

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603
           I GIGP+  + L+++FG  V  I  ++PE L  + GI    A KI
Sbjct: 98  IRGIGPVYAKRLVKAFGKDVFDIIEAAPERLREVTGIGLMRAAKI 142


>gi|123966450|ref|YP_001011531.1| hypothetical protein P9515_12171 [Prochlorococcus marinus str. MIT
           9515]
 gi|123200816|gb|ABM72424.1| Hypothetical protein P9515_12171 [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIY 604
           L E++G+G     LL  + + +++ +  +  E L +I+GI KK+  K+ 
Sbjct: 199 LCELDGVGGKTAGLLWDAGYLSIEAVKNAPQEELLNIKGIGKKLVEKLK 247


>gi|114567871|ref|YP_755025.1| DNA integrity scanning protein DisA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338806|gb|ABI69654.1| putative nucleic-acid-binding protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 356

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L++ FG +  + R+S E L  +EGI +  A  I N   +
Sbjct: 306 NLVERFGLLSNVLRASIEELDDVEGIGEVRARSIKNGLKR 345


>gi|326693304|ref|ZP_08230309.1| Holliday junction DNA helicase RuvA [Leuconostoc argentinum KCTC
           3773]
          Length = 197

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI 603
           K  ++ L  ++GIGP     +L S G  + +  +        L    G+ KK A +I
Sbjct: 67  KILFNKLLNVSGIGPKSALAILAS-GDAQGLVNAVANDDVSYLTQFPGVGKKTAQQI 122


>gi|188585739|ref|YP_001917284.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350426|gb|ACB84696.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 207

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISR-SSPETLASIEGISKKIACKIYN 605
           L+ + GIGP+R   +++     + +   +S E +  + GI   I  +I  
Sbjct: 157 LESLPGIGPVRAESIIKH---REKVGEFTSIEQIMDVNGIGPGIFNQIKE 203


>gi|138896185|ref|YP_001126638.1| DNA repair protein RadC [Geobacillus thermodenitrificans NG80-2]
 gi|196250140|ref|ZP_03148834.1| DNA repair protein RadC [Geobacillus sp. G11MC16]
 gi|166218780|sp|A4IRD9|Y2548_GEOTN RecName: Full=UPF0758 protein GTNG_2548
 gi|134267698|gb|ABO67893.1| DNA repair protein [Geobacillus thermodenitrificans NG80-2]
 gi|196210324|gb|EDY05089.1| DNA repair protein RadC [Geobacillus sp. G11MC16]
          Length = 226

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + +LQ F  ++++  ++ E + SI+GI    A +I    
Sbjct: 50  QRVLQHFEGLRLLKDATVEEMTSIKGIGPTKAVQILAAL 88


>gi|116754111|ref|YP_843229.1| ski2-like helicase [Methanosaeta thermophila PT]
 gi|116665562|gb|ABK14589.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT]
          Length = 693

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L E+ GIG +R R L Q+ + +++ +  +   TL+ I G   KIA  + +   +
Sbjct: 636 QLLELKGIGRVRARKLYQAGYRSLEDLKAADKSTLSEILG--PKIAEGVISQLKE 688


>gi|57234606|ref|YP_181338.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
 gi|123759715|sp|Q3Z8W1|DNLJ_DEHE1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|57225054|gb|AAW40111.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
          Length = 677

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G     LL   +G +  ++ +  + L +I  I  KIA  I  +F +  +
Sbjct: 523 GIRHVGNETAALLSSRYGDIWALAGAGLDELQTIPDIGAKIASSIKAYFSEEKN 576


>gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265]
 gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
          Length = 940

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IGP     LL  FG+++ +     E +A
Sbjct: 213 DNIPGAKGIGPKTAATLLGRFGSLENVYE-KLEEIA 247


>gi|297616642|ref|YP_003701801.1| hypothetical protein Slip_0452 [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144479|gb|ADI01236.1| conserved hypothetical protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 388

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PL  + G+GP     L++ F   + +I  +  + +  + G   + A  I
Sbjct: 318 PLAMLPGVGPRTVEKLVEHFENEIHVIENADLDEIKQVAG--AETATVI 364


>gi|219683758|ref|YP_002470141.1| DNA-binding protein [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621408|gb|ACL29565.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 236

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 14/54 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603
            L EI GIGP+    +++       F        +S + L ++ GI  K   K+
Sbjct: 184 QLQEIKGIGPVTAARIIEYRTQHGAF--------ASLDDLVNVPGIGMKTVEKL 229


>gi|195977787|ref|YP_002123031.1| DNA receptor late competence protein ComEA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974492|gb|ACG62018.1| DNA receptor late competence protein ComEA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 225

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           +A+ + L  I+GIG  R + ++    ++      S E L  + GI  K   K+ 
Sbjct: 168 RASLADLQRISGIGAKRAQDIIDVRESLGGFK--SLEDLRKVPGIGAKTLEKLK 219


>gi|183601709|ref|ZP_02963079.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190793|ref|YP_002968187.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196199|ref|YP_002969754.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219315|gb|EDT89956.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249185|gb|ACS46125.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250753|gb|ACS47692.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178529|gb|ADC85775.1| COME operon protein 1 [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793782|gb|ADG33317.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 258

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 14/54 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603
            L EI GIGP+    +++       F        +S + L ++ GI  K   K+
Sbjct: 206 QLQEIKGIGPVTAARIIEYRTQHGAF--------ASLDDLVNVPGIGMKTVEKL 251


>gi|118444996|ref|YP_878985.1| RecD/TraA family helicase [Clostridium novyi NT]
 gi|118135452|gb|ABK62496.1| helicase, RecD/TraA family [Clostridium novyi NT]
          Length = 735

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I+GIGP+  + +++ FG  T+  +     E L  I+GI  K    I
Sbjct: 88  ISGIGPVTAKKIVEHFGEKTLD-VLDEDIEKLKEIDGIGTKKIETI 132


>gi|166010983|ref|ZP_02231881.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. E1979001]
 gi|167399408|ref|ZP_02304932.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|45435409|gb|AAS60968.1| DNA-damage-inducible protein P [Yersinia pestis biovar Microtus
           str. 91001]
 gi|165989983|gb|EDR42284.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. E1979001]
 gi|167051912|gb|EDR63320.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|262363012|gb|ACY59733.1| DNA polymerase IV [Yersinia pestis D106004]
          Length = 356

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL +I G+G +  +                    LL+ FG    +             SP
Sbjct: 181 PLSKIPGVGAVTAKRLQALGLVTCGDIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 240

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  IY+ 
Sbjct: 241 DRLRKSVGVEKTLAEDIYDW 260


>gi|21957698|gb|AAM84540.1|AE013699_2 damage-inducible protein P; putative tRNA synthetase [Yersinia
           pestis KIM 10]
          Length = 356

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL +I G+G +  +                    LL+ FG    +             SP
Sbjct: 181 PLSKIPGVGAVTAKRLQALGLVTCGDIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 240

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  IY+ 
Sbjct: 241 DRLRKSVGVEKTLAEDIYDW 260


>gi|51595246|ref|YP_069437.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 32953]
 gi|153950157|ref|YP_001402117.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 31758]
 gi|170025513|ref|YP_001722018.1| DNA polymerase IV [Yersinia pseudotuberculosis YPIII]
 gi|186894264|ref|YP_001871376.1| DNA polymerase IV [Yersinia pseudotuberculosis PB1/+]
 gi|81640247|sp|Q66DZ7|DPO4_YERPS RecName: Full=DNA polymerase IV; Short=Pol IV
 gi|189044620|sp|A7FLI9|DPO4_YERP3 RecName: Full=DNA polymerase IV; Short=Pol IV
 gi|51588528|emb|CAH20136.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
           P [Yersinia pseudotuberculosis IP 32953]
 gi|152961652|gb|ABS49113.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 31758]
 gi|169752047|gb|ACA69565.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
 gi|186697290|gb|ACC87919.1| UMUC domain protein DNA-repair protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 352

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL +I G+G +  +                    LL+ FG    +             SP
Sbjct: 177 PLSKIPGVGAVTAKRLQALGLVTCGEIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  IY+ 
Sbjct: 237 DRLRKSVGVEKTLAEDIYDW 256


>gi|255304969|ref|ZP_05349141.1| DNA integrity scanning protein DisA [Clostridium difficile ATCC
           43255]
 gi|255654112|ref|ZP_05399521.1| DNA integrity scanning protein DisA [Clostridium difficile
           QCD-23m63]
 gi|296449849|ref|ZP_06891616.1| DNA integrity scanning protein [Clostridium difficile NAP08]
 gi|296877913|ref|ZP_06901933.1| DNA integrity scanning protein [Clostridium difficile NAP07]
 gi|296261336|gb|EFH08164.1| DNA integrity scanning protein [Clostridium difficile NAP08]
 gi|296431110|gb|EFH16937.1| DNA integrity scanning protein [Clostridium difficile NAP07]
          Length = 356

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 39/140 (27%)

Query: 470 DGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYF 529
           +    ++      +K LN E  I ++++AK           +    E++ + ++      
Sbjct: 241 NKENTEIKELMKKVKNLNSEELIELVNMAKLLG--------YSGFSESMDMPIKTRGYRI 292

Query: 530 IQRLRDEAHRF--AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           + ++    HR   AI                            L+  F   + I  +S E
Sbjct: 293 LSKI----HRLPTAI-------------------------IENLVNYFENFQQILDASIE 323

Query: 588 TLASIEGISKKIACKIYNHF 607
            L  +EGI +  A  I N  
Sbjct: 324 ELDEVEGIGEIRATYIKNGL 343


>gi|56807783|ref|ZP_00365637.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus pyogenes M49 591]
          Length = 571

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L+ +G +  +  +  E +A I+G+   IA  +  +F + T+
Sbjct: 421 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 474


>gi|317499031|ref|ZP_07957312.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893681|gb|EFV15882.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 651

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    +L+ + F      I  +  E   +I+ I   IA  + ++FH
Sbjct: 496 GIPNVGLSNAKLICKHFKEDFNAIREADAEDFIAIDQIGPMIAEAMVSYFH 546


>gi|291288208|ref|YP_003505024.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809]
 gi|290885368|gb|ADD69068.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809]
          Length = 652

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG +  +  +  E L ++  I  + A  I N F  + 
Sbjct: 500 GIRHVGERTAQVLAEYFGDIDKLVSADEEALVNVRDIGSETAGAIVNSFANDD 552


>gi|313127204|ref|YP_004037474.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
           11551]
 gi|312293569|gb|ADQ68029.1| DNA polymerase IV (family X) [Halogeometricum borinquense DSM
           11551]
          Length = 582

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPET-LASIEGISKKIACKIYN 605
           L  + G+GP     L  + G  T+  + R++ E  +  ++G   K    I  
Sbjct: 95  LTSVEGVGPKTVGKLYDALGITTLDELERAAEEEQIREVKGFGPKTEANIRE 146


>gi|315651635|ref|ZP_07904646.1| RecD/TraA family helicase [Eubacterium saburreum DSM 3986]
 gi|315486089|gb|EFU76460.1| RecD/TraA family helicase [Eubacterium saburreum DSM 3986]
          Length = 744

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           I G+G    + +++ F   T+  +    PE L  ++G+S K+A  I     +  S
Sbjct: 88  IKGVGEALAKRIIKKFKLDTL-RVMEEEPERLVEVKGVSAKLAKSISEQIQEKKS 141


>gi|312194271|ref|YP_004014332.1| DNA integrity scanning, DisA, linker region [Frankia sp. EuI1c]
 gi|311225607|gb|ADP78462.1| DNA integrity scanning, DisA, linker region [Frankia sp. EuI1c]
          Length = 359

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 18/38 (47%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  F T++ +  +  + L ++EG+ +  A  +    
Sbjct: 309 RLVDHFTTLQKLLAAGVDDLQAVEGVGETRAKAVREGL 346


>gi|257125939|ref|YP_003164053.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
 gi|257049878|gb|ACV39062.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
          Length = 706

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G     LL ++F  ++ +   S E L +++GI  K+A  +    +   +
Sbjct: 545 GIPFVGKFNANLLTKTFKNIENLKNQSIENLLAVKGIGDKVAVAVNTFLNDENN 598


>gi|212550985|ref|YP_002309302.1| NAD-dependent DNA ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|254781545|sp|B6YRR9|DNLJ_AZOPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212549223|dbj|BAG83891.1| NAD-dependent DNA ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 663

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 29/50 (58%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G +  + L ++F T++ +S ++ E L +I+GI  +IA  +  +F    +
Sbjct: 515 VGEVVAKRLAKAFPTIEQLSIANNEQLTTIDGIGNQIAQSVIQYFSNENN 564


>gi|325578251|ref|ZP_08148386.1| competence protein ComEA [Haemophilus parainfluenzae ATCC 33392]
 gi|325159987|gb|EGC72116.1| competence protein ComEA [Haemophilus parainfluenzae ATCC 33392]
          Length = 234

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           KA    L +++GIG  + + ++     V  I  +    L++I+GI +    KI    
Sbjct: 178 KADAETLQKLSGIGEKKAQAIIDYRNKVGKIKSA--AELSNIDGIGEATIEKITPFL 232


>gi|318061206|ref|ZP_07979927.1| membrane-bound DNA-binding protein [Streptomyces sp. SA3_actG]
 gi|318080631|ref|ZP_07987963.1| membrane-bound DNA-binding protein [Streptomyces sp. SA3_actF]
          Length = 258

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 14/57 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            LD + G+GP+  + +L        FG+V        + L  + GI ++   ++  +
Sbjct: 207 QLDGLPGVGPVLAQRILDHRVAHGGFGSV--------DELREVTGIGERRFAELREY 255


>gi|313200896|ref|YP_004039554.1| competence protein comea helix-hairpin-helix repeat-containing
           protein [Methylovorus sp. MP688]
 gi|312440212|gb|ADQ84318.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Methylovorus sp. MP688]
          Length = 95

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 16/70 (22%)

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASI 592
           FA++ H       A+   L+ + GIGP + + ++        F         + E L ++
Sbjct: 10  FALSAHAAVNINTASKEELETVKGIGPAKAQAIIDYRKKNGNFK--------TVEDLNNV 61

Query: 593 EGIS-KKIAC 601
            G   K +A 
Sbjct: 62  PGFGDKSLAK 71



 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ +S E L +++GI    A  I ++  KN +
Sbjct: 19  NINTASKEELETVKGIGPAKAQAIIDYRKKNGN 51


>gi|302519017|ref|ZP_07271359.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|302427912|gb|EFK99727.1| DNA-binding protein [Streptomyces sp. SPB78]
          Length = 324

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 14/57 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            LD + G+GP+  + +L        FG+V        + L  + GI ++   ++  +
Sbjct: 273 QLDGLPGVGPVLAQRILDHRVAHGRFGSV--------DELREVTGIGERRFAELREY 321


>gi|253998810|ref|YP_003050873.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Methylovorus sp. SIP3-4]
 gi|253985489|gb|ACT50346.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Methylovorus sp. SIP3-4]
          Length = 99

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 16/70 (22%)

Query: 540 FAITTHRKRR-KKAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASI 592
           FA++ H       A+   L+ + GIGP + + ++        F         + E L ++
Sbjct: 14  FALSAHAAVNINTASKEELETVKGIGPAKAQAIIDYRKKNGNFK--------TVEDLNNV 65

Query: 593 EGIS-KKIAC 601
            G   K +A 
Sbjct: 66  PGFGDKSLAK 75



 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ +S E L +++GI    A  I ++  KN +
Sbjct: 23  NINTASKEELETVKGIGPAKAQAIIDYRKKNGN 55


>gi|255533202|ref|YP_003093574.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
 gi|255346186|gb|ACU05512.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
          Length = 670

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 563 IGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           +G    + L  ++G   V  ++ +S E L +I+ I ++IA  I  +F K  
Sbjct: 520 VGETVAKKL--AYGVKNVDKLASASLEELTAIDEIGQRIAESIIEYFGKAE 568


>gi|166030629|ref|ZP_02233458.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC
           27755]
 gi|166029631|gb|EDR48388.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC
           27755]
          Length = 647

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I GIG    +++ + F G V  +  ++ E LA I+G+ + +A     +F   
Sbjct: 490 GIPGIGLANAKVICREFSGDVDRMIHATAEELAEIQGVGEVLAGAFVTYFQDE 542


>gi|94988258|ref|YP_596359.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS9429]
 gi|94992132|ref|YP_600231.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS2096]
 gi|122986939|sp|Q1JCM1|DNLJ_STRPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123080420|sp|Q1JMJ7|DNLJ_STRPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94541766|gb|ABF31815.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS9429]
 gi|94545640|gb|ABF35687.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS2096]
          Length = 652

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L+ +G +  +  +  E +A I+G+   IA  +  +F + T+
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555


>gi|32453718|ref|NP_861927.1| endonuclease II [Enterobacteria phage RB69]
 gi|32350537|gb|AAP76136.1| DenA endonuclease II [Enterobacteria phage RB69]
          Length = 136

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 22/93 (23%)

Query: 19  AGRVLYVGKAYNLQKRIKSY---------MHSNNHTHRITHMISQINNIRF-------TV 62
              ++Y+GK  NL+KRI  Y            +  +  I   + Q   + F         
Sbjct: 42  DDELVYIGKTKNLKKRINYYRTAINRKDQTSDSRKSLMILDALMQGKKVEFWARQCFDLS 101

Query: 63  TCTEVEAL------LLEANMIKRLKPRFNILLR 89
              E+ ++      L E   IK+  P +NI  +
Sbjct: 102 VTNELGSMTIATMDLEEPLFIKKFNPPWNIQHK 134


>gi|15674800|ref|NP_268974.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes M1 GAS]
 gi|71910386|ref|YP_281936.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS5005]
 gi|81533831|sp|Q9A0J5|DNLJ_STRP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|13621930|gb|AAK33695.1| putative DNA ligase [Streptococcus pyogenes M1 GAS]
 gi|71853168|gb|AAZ51191.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS5005]
          Length = 652

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L+ +G +  +  +  E +A I+G+   IA  +  +F + T+
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555


>gi|21910027|ref|NP_664295.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS315]
 gi|28896275|ref|NP_802625.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes SSI-1]
 gi|81759290|sp|Q8K831|DNLJ_STRP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21904217|gb|AAM79098.1| putative DNA ligase [Streptococcus pyogenes MGAS315]
 gi|28811526|dbj|BAC64458.1| putative DNA ligase [Streptococcus pyogenes SSI-1]
          Length = 652

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L+ +G +  +  +  E +A I+G+   IA  +  +F + T+
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555


>gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
 gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
          Length = 843

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 7/39 (17%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     LL+ FG+++ +     E L  +E
Sbjct: 197 DNIPGVRGIGPKSAAALLRRFGSLEALY----ERLEEVE 231


>gi|308494348|ref|XP_003109363.1| hypothetical protein CRE_08225 [Caenorhabditis remanei]
 gi|308246776|gb|EFO90728.1| hypothetical protein CRE_08225 [Caenorhabditis remanei]
          Length = 247

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            LL  FGT++ +S ++   ++   G+    A  +++  H
Sbjct: 202 RLLFHFGTLQAVSTATETAISVCPGVGPIKAKNLHSFLH 240


>gi|281202660|gb|EFA76862.1| DNA excision repair protein 1 [Polysphondylium pallidum PN500]
          Length = 536

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 551 KAAYSPLDE---------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           K   S LD+         I GI       L+ +FGTVK I   S E+     G+ +K   
Sbjct: 389 KTKQSNLDKTLVQDALTTIKGINKTDATTLISTFGTVKRIFDGSKESFGLCPGMGQKKVN 448

Query: 602 KIYNHFHK 609
            +YN  H+
Sbjct: 449 SLYNVLHQ 456


>gi|161484857|ref|NP_668289.2| DNA polymerase IV [Yersinia pestis KIM 10]
 gi|270489441|ref|ZP_06206515.1| DNA polymerase IV [Yersinia pestis KIM D27]
 gi|270337945|gb|EFA48722.1| DNA polymerase IV [Yersinia pestis KIM D27]
          Length = 352

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL +I G+G +  +                    LL+ FG    +             SP
Sbjct: 177 PLSKIPGVGAVTAKRLQALGLVTCGDIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  IY+ 
Sbjct: 237 DRLRKSVGVEKTLAEDIYDW 256


>gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83]
 gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83]
          Length = 926

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 10/51 (19%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IG      LL  +G++  I  +  + L         +A KI  
Sbjct: 190 DNIPGCKGIGAKTAEKLLAEYGSIDGIY-AHQDELKG------AVAKKIQE 233


>gi|110633807|ref|YP_674015.1| DNA repair protein RadC [Mesorhizobium sp. BNC1]
 gi|110284791|gb|ABG62850.1| DNA repair protein RadC [Chelativorans sp. BNC1]
          Length = 251

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + LL  FG++  +  +  + L  +EGI +  A  + 
Sbjct: 75  KALLNRFGSIGEVLGAPEQRLREVEGIGEAAARDLK 110


>gi|297698143|ref|XP_002826187.1| PREDICTED: DNA repair endonuclease XPF-like [Pongo abelii]
          Length = 916

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 852 LLKMPGVNAKNCRSLMHHVKNIAELATLSQDELTSILG-NAANAKQLYDFIHTSYAE 907


>gi|225175287|ref|ZP_03729282.1| helicase, RecD/TraA family [Dethiobacter alkaliphilus AHT 1]
 gi|225169039|gb|EEG77838.1| helicase, RecD/TraA family [Dethiobacter alkaliphilus AHT 1]
          Length = 724

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKM--ISRSSPETLASIEGISKKIACKIYNHFH 608
           +   S L  I G+GP     +++ FG V    I  + P  L  +EGI  K A  I +   
Sbjct: 82  RFLASGL--IKGVGPSTAEKIVEHFG-VDALEIIENDPGRLCEVEGIGVKKAATISDSLA 138

Query: 609 K 609
           +
Sbjct: 139 E 139


>gi|209559128|ref|YP_002285600.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes NZ131]
 gi|254781429|sp|B5XKP3|DNLJ_STRPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|209540329|gb|ACI60905.1| DNA ligase [Streptococcus pyogenes NZ131]
          Length = 652

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L+ +G +  +  +  E +A I+G+   IA  +  +F + T+
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555


>gi|94994051|ref|YP_602149.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10750]
 gi|123257616|sp|Q1J7G9|DNLJ_STRPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94547559|gb|ABF37605.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10750]
          Length = 652

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L+ +G +  +  +  E +A I+G+   IA  +  +F + T+
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555


>gi|71903217|ref|YP_280020.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS6180]
 gi|123761437|sp|Q48UE1|DNLJ_STRPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71802312|gb|AAX71665.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS6180]
          Length = 652

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L+ +G +  +  +  E +A I+G+   IA  +  +F + T+
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555


>gi|227875717|ref|ZP_03993845.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243]
 gi|269976734|ref|ZP_06183710.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1]
 gi|227843659|gb|EEJ53840.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243]
 gi|269935099|gb|EEZ91657.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1]
          Length = 917

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R K  +  L    I  +GP+  R + + F T+  ++ +  E L+ +EG+   IA  + + 
Sbjct: 668 RSKETWRVLVALSIRHLGPVAARAVARRFPTLAAVAAADVEGLSQVEGVGAVIAASVVDW 727

Query: 607 FH 608
           F 
Sbjct: 728 FR 729


>gi|150026465|ref|YP_001297291.1| protein Smf of unknown function [Flavobacterium psychrophilum
           JIP02/86]
 gi|149773006|emb|CAL44490.1| Protein Smf of unknown function [Flavobacterium psychrophilum
           JIP02/86]
          Length = 366

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L ++ G+G +  + LL   G+ + +  +    LA+I+GI K +   + N
Sbjct: 11  ALQKVEGVGDIMAKKLLNHCGSAEAVFTTKTSQLATIDGIGKVLLNNLKN 60


>gi|1303985|dbj|BAA12640.1| YqkH [Bacillus subtilis]
          Length = 294

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL  + G+GP     L ++FGT + ++  ++ E LA +  +  K A  I   
Sbjct: 225 PLQFVPGVGPKTLDKLKKAFGTEMAVLHEAAEEDLARV--VPPKTAALIVKA 274


>gi|108808712|ref|YP_652628.1| DNA polymerase IV [Yersinia pestis Antiqua]
 gi|108811029|ref|YP_646796.1| DNA polymerase IV [Yersinia pestis Nepal516]
 gi|145600117|ref|YP_001164193.1| DNA polymerase IV [Yersinia pestis Pestoides F]
 gi|149364926|ref|ZP_01886961.1| DNA-damage-inducible protein P [Yersinia pestis CA88-4125]
 gi|161511436|ref|NP_992091.2| DNA polymerase IV [Yersinia pestis biovar Microtus str. 91001]
 gi|162421814|ref|YP_001607653.1| DNA polymerase IV [Yersinia pestis Angola]
 gi|165926575|ref|ZP_02222407.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165935841|ref|ZP_02224411.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. IP275]
 gi|166212896|ref|ZP_02238931.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167421635|ref|ZP_02313388.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423673|ref|ZP_02315426.1| DNA polymerase IV [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167467178|ref|ZP_02331882.1| DNA polymerase IV [Yersinia pestis FV-1]
 gi|218930258|ref|YP_002348133.1| DNA polymerase IV [Yersinia pestis CO92]
 gi|229838837|ref|ZP_04458996.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896011|ref|ZP_04511181.1| DNA polymerase IV [Yersinia pestis Pestoides A]
 gi|229899406|ref|ZP_04514549.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901251|ref|ZP_04516373.1| DNA polymerase IV [Yersinia pestis Nepal516]
 gi|294504948|ref|YP_003569010.1| DNA polymerase IV [Yersinia pestis Z176003]
 gi|22095621|sp|Q8ZBZ9|DPO4_YERPE RecName: Full=DNA polymerase IV; Short=Pol IV
 gi|123245611|sp|Q1C4D9|DPO4_YERPA RecName: Full=DNA polymerase IV; Short=Pol IV
 gi|123246681|sp|Q1CLD4|DPO4_YERPN RecName: Full=DNA polymerase IV; Short=Pol IV
 gi|189044621|sp|A4TPK8|DPO4_YERPP RecName: Full=DNA polymerase IV; Short=Pol IV
 gi|108774677|gb|ABG17196.1| DNA-damage-inducible protein P [Yersinia pestis Nepal516]
 gi|108780625|gb|ABG14683.1| DNA-damage-inducible protein P [Yersinia pestis Antiqua]
 gi|115348869|emb|CAL21825.1| DNA-damage-inducible protein P [Yersinia pestis CO92]
 gi|145211813|gb|ABP41220.1| DNA-damage-inducible protein P [Yersinia pestis Pestoides F]
 gi|149291339|gb|EDM41413.1| DNA-damage-inducible protein P [Yersinia pestis CA88-4125]
 gi|162354629|gb|ABX88577.1| DNA polymerase IV [Yersinia pestis Angola]
 gi|165915986|gb|EDR34593.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921503|gb|EDR38700.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. F1991016]
 gi|166205683|gb|EDR50163.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960554|gb|EDR56575.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167057843|gb|EDR67589.1| DNA polymerase IV [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229681180|gb|EEO77274.1| DNA polymerase IV [Yersinia pestis Nepal516]
 gi|229687808|gb|EEO79881.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695203|gb|EEO85250.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700934|gb|EEO88963.1| DNA polymerase IV [Yersinia pestis Pestoides A]
 gi|262366936|gb|ACY63493.1| DNA polymerase IV [Yersinia pestis D182038]
 gi|294355407|gb|ADE65748.1| DNA polymerase IV [Yersinia pestis Z176003]
          Length = 352

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL +I G+G +  +                    LL+ FG    +             SP
Sbjct: 177 PLSKIPGVGAVTAKRLQALGLVTCGDIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  IY+ 
Sbjct: 237 DRLRKSVGVEKTLAEDIYDW 256


>gi|321311837|ref|YP_004204124.1| hypothetical protein BSn5_02315 [Bacillus subtilis BSn5]
 gi|320018111|gb|ADV93097.1| hypothetical protein BSn5_02315 [Bacillus subtilis BSn5]
          Length = 387

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL  + G+GP     L ++FGT + ++  ++ E LA +  +  K A  I   
Sbjct: 318 PLQFVPGVGPKTLDKLKKAFGTEMAVLHEAAEEDLARV--VPPKTAALIVKA 367


>gi|329954852|ref|ZP_08295869.1| DNA ligase [Bacteroides clarus YIT 12056]
 gi|328526956|gb|EGF53967.1| DNA ligase [Bacteroides clarus YIT 12056]
          Length = 665

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF  +  +  ++ E L +I+ I +KIA  I  +F
Sbjct: 515 VGETVAKKIAKSFNDIDELENANLEKLINIDEIGEKIAQSILAYF 559


>gi|325958270|ref|YP_004289736.1| DNA mismatch repair protein MutS domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329702|gb|ADZ08764.1| DNA mismatch repair protein MutS domain protein [Methanobacterium
           sp. AL-21]
          Length = 630

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNHF 607
           L +I GIG  +   +L SFG  K   R+      + L +IEG+S++ A +I N  
Sbjct: 3   LRDIKGIGERQADKILSSFGGEKEFYRAVKHYEVDKLTNIEGVSQRKAIEIINAL 57


>gi|75909996|ref|YP_324292.1| SMF protein [Anabaena variabilis ATCC 29413]
 gi|75703721|gb|ABA23397.1| SMF protein [Anabaena variabilis ATCC 29413]
          Length = 372

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +I+G+GP+  R L Q FGT+     ++   L  +EG   +   K+
Sbjct: 13  QISGVGPVLLRRLQQHFGTLAAAWNATQAQLGEVEGFGLQTLEKV 57


>gi|19745839|ref|NP_606975.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS8232]
 gi|94990137|ref|YP_598237.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10270]
 gi|139474058|ref|YP_001128774.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes str.
           Manfredo]
 gi|81632934|sp|Q8P1L1|DNLJ_STRP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|123258039|sp|Q1JHP3|DNLJ_STRPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166216247|sp|A2RFD0|DNLJ_STRPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|19747987|gb|AAL97474.1| putative DNA ligase [Streptococcus pyogenes MGAS8232]
 gi|94543645|gb|ABF33693.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10270]
 gi|134272305|emb|CAM30559.1| DNA ligase [Streptococcus pyogenes str. Manfredo]
          Length = 652

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L+ +G +  +  +  E +A I+G+   IA  +  +F + T+
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555


>gi|320016419|gb|ADV99990.1| DNA polymerase IV [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 352

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL +I G+G +  +                    LL+ FG    +             SP
Sbjct: 177 PLSKIPGVGAVTAKRLQALGLVTCGDIQKYPLAELLKHFGKFGRVLWERSHGIDEREISP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  IY+ 
Sbjct: 237 DRLRKSVGVEKTLAEDIYDW 256


>gi|255767513|ref|NP_390241.2| hypothetical protein BSU23600 [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|238054353|sp|P38423|YQXK_BACSU RecName: Full=Uncharacterized protein yqxK; AltName: Full=ORF2
 gi|225185141|emb|CAB14292.2| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 387

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL  + G+GP     L ++FGT + ++  ++ E LA +  +  K A  I   
Sbjct: 318 PLQFVPGVGPKTLDKLKKAFGTEMAVLHEAAEEDLARV--VPPKTAALIVKA 367


>gi|167043918|gb|ABZ08606.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote
           HF4000_APKG3H9]
          Length = 711

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETL 589
           QR+     R+ I        K     L +I GIG +R R L ++   T + ++ +S   L
Sbjct: 644 QRI-----RYGI--------KEELIDLVKIKGIGRVRARRLYKNNIKTRQDLATTSVNQL 690

Query: 590 ASIEGISKKIACKIYNHFH 608
           A+I+ I   +A  I +   
Sbjct: 691 AAIDKIGMAVANSIKSQLR 709


>gi|167042655|gb|ABZ07376.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote
           HF4000_ANIW133M9]
          Length = 711

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETL 589
           QR+     R+ I        K     L +I GIG +R R L ++   T + ++ +S   L
Sbjct: 644 QRI-----RYGI--------KEELIDLVKIKGIGRVRARRLYKNNIKTRQDLATTSVNQL 690

Query: 590 ASIEGISKKIACKIYNHFH 608
           A+I+ I   +A  I +   
Sbjct: 691 AAIDKIGMAVANSIKSQLR 709


>gi|160889578|ref|ZP_02070581.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492]
 gi|317480069|ref|ZP_07939180.1| DNA ligase [Bacteroides sp. 4_1_36]
 gi|156861095|gb|EDO54526.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492]
 gi|316903746|gb|EFV25589.1| DNA ligase [Bacteroides sp. 4_1_36]
          Length = 665

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF  ++ +  +  E L +I+ I +KIA  I  +F
Sbjct: 515 VGETVAKKIAKSFTDIEELENADLEKLKNIDEIGEKIAQSIITYF 559


>gi|257879529|ref|ZP_05659182.1| DNA repair protein RadC [Enterococcus faecium 1,230,933]
 gi|257883463|ref|ZP_05663116.1| DNA repair protein RadC [Enterococcus faecium 1,231,502]
 gi|257894826|ref|ZP_05674479.1| DNA repair protein RadC [Enterococcus faecium 1,231,408]
 gi|261209045|ref|ZP_05923449.1| DNA repair protein RadC [Enterococcus faecium TC 6]
 gi|289566560|ref|ZP_06446982.1| DNA repair protein RadC [Enterococcus faecium D344SRF]
 gi|257813757|gb|EEV42515.1| DNA repair protein RadC [Enterococcus faecium 1,230,933]
 gi|257819121|gb|EEV46449.1| DNA repair protein RadC [Enterococcus faecium 1,231,502]
 gi|257831205|gb|EEV57812.1| DNA repair protein RadC [Enterococcus faecium 1,231,408]
 gi|260076957|gb|EEW64680.1| DNA repair protein RadC [Enterococcus faecium TC 6]
 gi|289161659|gb|EFD09537.1| DNA repair protein RadC [Enterococcus faecium D344SRF]
          Length = 223

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL++FG +  + +++   L  I GI +  A +I  
Sbjct: 52  NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87


>gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
 gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
          Length = 926

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 10/51 (19%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IG      LL  +G++  I  +  + L         +A KI  
Sbjct: 190 DNIPGCKGIGAKTAEKLLAEYGSIDGIY-AHQDELKG------AVAKKIQE 233


>gi|169838010|ref|ZP_02871198.1| Excinuclease ABC subunit C [candidate division TM7 single-cell
           isolate TM7a]
          Length = 142

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 3/139 (2%)

Query: 262 HFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETS--LLEISF 319
             G+        +  +     + +    +  +Y  +  P++I+  E   ++   + E + 
Sbjct: 5   REGKVINKNHIIISMERSQEES-LFERLITSYYEKRNIPKHIICDERFLQSEHLIKEWAK 63

Query: 320 FKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIP 379
            +++             + +++E   +N      +        Q  L +  K+  L   P
Sbjct: 64  IEKHKEVKLHFPKINSRRLQLLEMGYLNLREEVDKYYRKRRMVQEGLHNLKKELRLKSFP 123

Query: 380 KRIEIYDNSHIMGCSAVGC 398
            RI+ +D S+I G  AV  
Sbjct: 124 YRIDCFDISNIQGKDAVAA 142


>gi|167766753|ref|ZP_02438806.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1]
 gi|167711507|gb|EDS22086.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1]
          Length = 651

 Score = 43.2 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G    +L+ + F      I  +  E   +I+ I   IA  + ++FH
Sbjct: 496 GIPNVGLSNAKLICKHFKEDFNAIREADAEDFIAIDQIGPMIAEAMVSYFH 546


>gi|284165904|ref|YP_003404183.1| DNA-directed DNA polymerase [Haloterrigena turkmenica DSM 5511]
 gi|284015559|gb|ADB61510.1| DNA-directed DNA polymerase [Haloterrigena turkmenica DSM 5511]
          Length = 583

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSP-ETLASIEGISKKIACKIYN 605
           I G+GP     L +  G  T+  +  ++    +  ++G   K    I  
Sbjct: 99  IEGVGPKTAGKLYRELGIETLDDLEEAAENNEIQEVKGFGPKTEQNIRE 147


>gi|270296700|ref|ZP_06202899.1| DNA ligase, NAD-dependent [Bacteroides sp. D20]
 gi|270272687|gb|EFA18550.1| DNA ligase, NAD-dependent [Bacteroides sp. D20]
          Length = 665

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF  ++ +  +  E L +I+ I +KIA  I  +F
Sbjct: 515 VGETVAKKIAKSFTDIEELENADLEKLKNIDEIGEKIAQSIITYF 559


>gi|198284777|ref|YP_002221098.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665419|ref|YP_002427462.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249298|gb|ACH84891.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517632|gb|ACK78218.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 135

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 12/57 (21%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKI 603
           A  + LD + GIGP + + +L+         ++     S + L S+ GI  ++  ++
Sbjct: 29  ADATALDALPGIGPAKAQAVLEY-------RQAHGPFRSVDELTSVHGIGPRLLERL 78


>gi|314938909|ref|ZP_07846176.1| DNA repair protein RadC [Enterococcus faecium TX0133a04]
 gi|314943095|ref|ZP_07849896.1| DNA repair protein RadC [Enterococcus faecium TX0133C]
 gi|314948108|ref|ZP_07851509.1| DNA repair protein RadC [Enterococcus faecium TX0082]
 gi|314951626|ref|ZP_07854671.1| DNA repair protein RadC [Enterococcus faecium TX0133A]
 gi|314993869|ref|ZP_07859203.1| DNA repair protein RadC [Enterococcus faecium TX0133B]
 gi|314996710|ref|ZP_07861733.1| DNA repair protein RadC [Enterococcus faecium TX0133a01]
 gi|313589148|gb|EFR67993.1| DNA repair protein RadC [Enterococcus faecium TX0133a01]
 gi|313591679|gb|EFR70524.1| DNA repair protein RadC [Enterococcus faecium TX0133B]
 gi|313596222|gb|EFR75067.1| DNA repair protein RadC [Enterococcus faecium TX0133A]
 gi|313598197|gb|EFR77042.1| DNA repair protein RadC [Enterococcus faecium TX0133C]
 gi|313641783|gb|EFS06363.1| DNA repair protein RadC [Enterococcus faecium TX0133a04]
 gi|313645444|gb|EFS10024.1| DNA repair protein RadC [Enterococcus faecium TX0082]
          Length = 212

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL++FG +  + +++   L  I GI +  A +I  
Sbjct: 34  NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 69


>gi|50913936|ref|YP_059908.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10394]
 gi|81372213|sp|Q5XCY8|DNLJ_STRP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|50903010|gb|AAT86725.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10394]
          Length = 652

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L+ +G +  +  +  E +A I+G+   IA  +  +F + T+
Sbjct: 502 GIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555


>gi|73662477|ref|YP_301258.1| DNA uptake protein and related DNA-binding protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494992|dbj|BAE18313.1| putative DNA uptake protein and related DNA-binding protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 240

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 14/58 (24%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603
           A  S L  INGIGP + + +++       F +V        E L  + GI  K   KI
Sbjct: 185 ATESQLLTINGIGPTKAKAIIEYRQQHGPFESV--------EQLKDVNGIGAKTLEKI 234


>gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
 gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
          Length = 946

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLA 590
            I GIG    + L+  FG+V+  I  +  + L 
Sbjct: 194 GIPGIGEKTAQKLIADFGSVENLIKNA--DQLK 224


>gi|228476055|ref|ZP_04060763.1| ComE operon protein 1 [Staphylococcus hominis SK119]
 gi|314936290|ref|ZP_07843637.1| competence protein comEA [Staphylococcus hominis subsp. hominis
           C80]
 gi|228269878|gb|EEK11358.1| ComE operon protein 1 [Staphylococcus hominis SK119]
 gi|313654909|gb|EFS18654.1| competence protein comEA [Staphylococcus hominis subsp. hominis
           C80]
          Length = 220

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 14/58 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L  + GIGP + + +++       F         + E L  + GI  K   K+ ++F
Sbjct: 169 ELLNVPGIGPTKVKEIIKYREEKGQFN--------NVEDLKQVRGIGGKTFEKLKDYF 218


>gi|69246244|ref|ZP_00603857.1| DNA repair protein RadC [Enterococcus faecium DO]
 gi|68195345|gb|EAN09794.1| DNA repair protein RadC [Enterococcus faecium DO]
          Length = 226

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL++FG +  + +++   L  I GI +  A +I  
Sbjct: 48  NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 83


>gi|333027152|ref|ZP_08455216.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
 gi|332747004|gb|EGJ77445.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
          Length = 322

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 14/57 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            LD + G+GP+  + +L        FG++        + L  + GI ++   ++  +
Sbjct: 271 QLDGLPGVGPVLAQRILDHRVAHGGFGSL--------DELREVTGIGERRFAELREY 319


>gi|303232308|ref|ZP_07319004.1| comEA protein [Atopobium vaginae PB189-T1-4]
 gi|302481594|gb|EFL44658.1| comEA protein [Atopobium vaginae PB189-T1-4]
          Length = 188

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 10/61 (16%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL----QSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           KA+ + L+ I GIGP   + ++    Q  G  K +     E L  ++GI KK   KI  H
Sbjct: 132 KASAANLETIPGIGPSTAQHIVADRAQH-GKFKRL-----EDLMRVKGIGKKKFEKIKPH 185

Query: 607 F 607
            
Sbjct: 186 I 186


>gi|323697702|ref|ZP_08109614.1| DNA ligase, NAD-dependent [Desulfovibrio sp. ND132]
 gi|323457634|gb|EGB13499.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans ND132]
          Length = 684

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            I  IG    R L   F  +  +  ++ + L  ++GI   +A  + + 
Sbjct: 518 GIRHIGEQAARTLAARFKNLDELFGATLDDLTGLDGIGDVMAESVLDF 565


>gi|299144358|ref|ZP_07037438.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518843|gb|EFI42582.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 664

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            IN +G      L   F    ++  +  + L  I+ I    A +I   F+
Sbjct: 509 GINNVGIKTAYDLANKFKDFDLLRHAKYDELVDIDDIGPITAKEIVEFFN 558


>gi|296454274|ref|YP_003661417.1| competence protein ComEA [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183705|gb|ADH00587.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 259

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 8/47 (17%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599
            L  I GIGP+  + ++      G       +S + L  ++GI  K 
Sbjct: 207 ELQSIKGIGPVTAQRIIDHRTAIGGY-----ASVDQLLDVKGIGSKT 248


>gi|237756074|ref|ZP_04584652.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691767|gb|EEP60797.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 299

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 11/56 (19%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I GIGP     LLQ FG+++ I       L +++    K+  K+   F +     
Sbjct: 188 GIKGIGPKTAAALLQEFGSLENI-------LENVD----KLKGKLKESFKEVDKEQ 232


>gi|213691901|ref|YP_002322487.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523362|gb|ACJ52109.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458000|dbj|BAJ68621.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 259

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 8/47 (17%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599
            L  I GIGP+  + ++      G       +S + L  ++GI  K 
Sbjct: 207 ELQSIKGIGPVTAQRIIDHRTAIGGY-----ASVDQLLDVKGIGSKT 248


>gi|239616446|ref|YP_002939768.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505277|gb|ACR78764.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Kosmotoga olearia TBF 19.5.1]
          Length = 264

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 21/78 (26%)

Query: 556 PLDEINGIGPLRKRLL--LQSFGTVK-------------MISRSSPETLASIEGISKKIA 600
            L  + GIG      +  L   G+V               ++ ++ + L ++ GI   +A
Sbjct: 166 ELINVKGIGRATLDKIRNLVRVGSVSTNVPDKSENSGKINVNTATLQELVALPGIGPVLA 225

Query: 601 CKIYNH------FHKNTS 612
            +I ++      FHK   
Sbjct: 226 ERIIDYREHNGKFHKPED 243


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPE---------TLASIEG-ISKKIACKIYNH 606
            I G+G    + L++ +G+++ I   S E            + +G ISKK+A  I + 
Sbjct: 194 GIPGVGEKTAKSLIKQYGSMENIIAHSHELKGKLRENIETHAQQGLISKKLATIILDA 251


>gi|295394824|ref|ZP_06805039.1| competence protein [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972420|gb|EFG48280.1| competence protein [Brevibacterium mcbrellneri ATCC 49030]
          Length = 245

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 14/54 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603
            L E+ G+GP     +++       F ++        E L  + GI   I  ++
Sbjct: 194 ELQELPGVGPATSEAIIKHREENGRFESI--------EELEDVPGIGPAILERL 239


>gi|293557235|ref|ZP_06675783.1| DNA repair protein RadC [Enterococcus faecium E1039]
 gi|291600599|gb|EFF30903.1| DNA repair protein RadC [Enterococcus faecium E1039]
          Length = 230

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL++FG +  + +++   L  I GI +  A +I  
Sbjct: 52  NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87


>gi|261211985|ref|ZP_05926271.1| DNA ligase [Vibrio sp. RC341]
 gi|260838593|gb|EEX65244.1| DNA ligase [Vibrio sp. RC341]
          Length = 670

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G      L Q F T++ I++++ E L  +  +   +A  ++  F ++ + 
Sbjct: 520 VGEATALNLAQHFLTLEAIAQATMEQLIEVSDVGNVVAGHLHAFFAQSRNQ 570


>gi|227550362|ref|ZP_03980411.1| DNA repair protein RadC [Enterococcus faecium TX1330]
 gi|227180501|gb|EEI61473.1| DNA repair protein RadC [Enterococcus faecium TX1330]
          Length = 225

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL++FG +  + +++   L  I GI +  A +I  
Sbjct: 47  NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 82


>gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425]
 gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425]
          Length = 982

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IGP     LL  FG+++ I + S + + 
Sbjct: 218 DNIPGVRGIGPKTAVQLLSQFGSLEQIYQ-SLDQIK 252


>gi|331001976|ref|ZP_08325496.1| RecD/TraA family helicase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330411772|gb|EGG91177.1| RecD/TraA family helicase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 744

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +K   S    I G+G    + +++ F   T+  +    PE LA ++G+S K+A  I    
Sbjct: 80  QKYLASS--AIKGVGEALAKRIVKKFKMDTL-RVMEEEPERLAEVKGVSAKLAKSISEQI 136

Query: 608 HKNTS 612
            +  S
Sbjct: 137 QEKKS 141


>gi|313890529|ref|ZP_07824157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121046|gb|EFR44157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
          Length = 652

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    RLLL++FG ++ + +S+ + +A I+G+   IA  +  +F K  +  
Sbjct: 502 GIRHVGEKASRLLLETFGDIETLMQSNEDAIAQIDGLGHVIANSLAQYFAKPEAQQ 557


>gi|317049042|ref|YP_004116690.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
 gi|316950659|gb|ADU70134.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
          Length = 672

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA ++ L        I  +G      L   FG ++ +  +  + L +++ + + +A  + 
Sbjct: 502 KAKFTTLPRFLYALGIREVGEATAANLANHFGELEKVMDADLDALIAVQDVGQVVASHVR 561

Query: 605 NHFHKNTS 612
           N   + ++
Sbjct: 562 NFMDEESN 569


>gi|257885023|ref|ZP_05664676.1| DNA repair protein RadC [Enterococcus faecium 1,231,501]
 gi|257890249|ref|ZP_05669902.1| DNA repair protein RadC [Enterococcus faecium 1,231,410]
 gi|258616808|ref|ZP_05714578.1| DNA repair protein RadC [Enterococcus faecium DO]
 gi|260559754|ref|ZP_05831934.1| DNA repair protein RadC [Enterococcus faecium C68]
 gi|293559749|ref|ZP_06676270.1| DNA repair protein RadC [Enterococcus faecium E1162]
 gi|293567615|ref|ZP_06678959.1| DNA repair protein RadC [Enterococcus faecium E1071]
 gi|257820875|gb|EEV48009.1| DNA repair protein RadC [Enterococcus faecium 1,231,501]
 gi|257826609|gb|EEV53235.1| DNA repair protein RadC [Enterococcus faecium 1,231,410]
 gi|260074422|gb|EEW62744.1| DNA repair protein RadC [Enterococcus faecium C68]
 gi|291589716|gb|EFF21520.1| DNA repair protein RadC [Enterococcus faecium E1071]
 gi|291606297|gb|EFF35710.1| DNA repair protein RadC [Enterococcus faecium E1162]
          Length = 230

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL++FG +  + +++   L  I GI +  A +I  
Sbjct: 52  NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87


>gi|158312222|ref|YP_001504730.1| DNA integrity scanning protein DisA [Frankia sp. EAN1pec]
 gi|226729442|sp|A8LF79|DISA_FRASN RecName: Full=DNA integrity scanning protein disA
 gi|158107627|gb|ABW09824.1| protein of unknown function DUF147 [Frankia sp. EAN1pec]
          Length = 359

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 18/38 (47%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  F T++ +  +  + L +++G+ +  A  +    
Sbjct: 309 RLVDHFSTLQKLLAAGVDDLQAVDGVGETRARAVREGL 346


>gi|315446225|ref|YP_004079104.1| nucleic-acid-binding protein (contains the HHH domain)
           [Mycobacterium sp. Spyr1]
 gi|315264528|gb|ADU01270.1| predicted nucleic-acid-binding protein (contains the HHH domain)
           [Mycobacterium sp. Spyr1]
          Length = 373

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L+++FG+++ +  +S   L S+EGI    A  I     +    T
Sbjct: 324 LVRNFGSLQGLLAASASDLQSVEGIGSMWARHIREGLSQLAEST 367


>gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
 gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
          Length = 875

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+++ I   S + ++S++
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSIENIFN-SLDQISSVK 223


>gi|315055791|ref|XP_003177270.1| DNA repair protein rad16 [Arthroderma gypseum CBS 118893]
 gi|311339116|gb|EFQ98318.1| DNA repair protein rad16 [Arthroderma gypseum CBS 118893]
          Length = 973

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 13/77 (16%)

Query: 545 HRKRRKKAAYSPL--DEI---NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           HR       +S L  D I    G+ P     L+     +  ++  S E L     + K+ 
Sbjct: 901 HR------VFSLLPQDMIRAVPGVEPKTLERLILETKNIHEVANMSVEQLE--PLVGKEA 952

Query: 600 ACKIYNHFHKNTSHTPT 616
           A KI+  F ++     T
Sbjct: 953 ARKIFKFFTRSVFDAET 969


>gi|148263726|ref|YP_001230432.1| phosphotransferase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397226|gb|ABQ25859.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4]
          Length = 577

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 541 AITTHRKRRKKA---AYSPLDEINGIGPLRKRLLL--QSFGTVKMISRSSPE-TLASIEG 594
           AI  H K + +      S L  + G+GP   R +   +   ++  + R++ E  LA I G
Sbjct: 74  AIHAHDKLKGEIPSGLLS-LLAVPGLGPKTARQIFEQRHIASIDDLERAAREHKLAGIPG 132

Query: 595 ISKKIACKIYN 605
           I KK    I  
Sbjct: 133 IQKKTEENILK 143


>gi|323352682|ref|ZP_08087652.1| competence protein CelA [Streptococcus sanguinis VMC66]
 gi|322121718|gb|EFX93464.1| competence protein CelA [Streptococcus sanguinis VMC66]
          Length = 243

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L  I+GIG  R   ++    +       S + L  + GI  K   K+  +
Sbjct: 191 ELQTISGIGQKRASDIIAYRESNGRFK--SVDDLKKVSGIGDKTLEKLKEY 239


>gi|313676995|ref|YP_004054991.1| DNA protecting protein dpra [Marivirga tractuosa DSM 4126]
 gi|312943693|gb|ADR22883.1| DNA protecting protein DprA [Marivirga tractuosa DSM 4126]
          Length = 368

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           KA  S L  I  IG +  + L+   G+ + +       L  I GI +K    I
Sbjct: 6   KALLS-LHLIPKIGNITIKSLISHCGSAQAVLDLPQSKLLKIPGIGQKTIDNI 57


>gi|300088789|ref|YP_003759311.1| DNA repair protein RadC [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528522|gb|ADJ26990.1| DNA repair protein RadC [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 263

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +  L  F +++ +  +  E L  + GI    +  I
Sbjct: 70  KAALARFKSLRGVLEAPVEELTQVPGIGPVNSTAI 104


>gi|294101601|ref|YP_003553459.1| DNA repair protein RadC [Aminobacterium colombiense DSM 12261]
 gi|293616581|gb|ADE56735.1| DNA repair protein RadC [Aminobacterium colombiense DSM 12261]
          Length = 224

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISK-KIA 600
           LL  FG +K IS++S   +  ++G+ K K+A
Sbjct: 50  LLHLFGGLKGISKASISEILQVKGMGKAKVA 80


>gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5]
 gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5]
          Length = 881

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           D I G   IGP   + LL+ +GT+  I  +  + ++   G
Sbjct: 184 DNIPGVKGIGPKSAQKLLEQYGTLDNIY-AHVDEISGAVG 222


>gi|302680174|ref|XP_003029769.1| hypothetical protein SCHCODRAFT_42481 [Schizophyllum commune H4-8]
 gi|300103459|gb|EFI94866.1| hypothetical protein SCHCODRAFT_42481 [Schizophyllum commune H4-8]
          Length = 185

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
             S L  I+ +       L  SFG+   I+R+S + L+++ G  +     I N F K
Sbjct: 123 LRSALTSISKVNKTDVETLRTSFGSFADIARASSDQLSNLPGFGQVKVKNIKNAFEK 179


>gi|257888395|ref|ZP_05668048.1| DNA repair protein RadC [Enterococcus faecium 1,141,733]
 gi|257824449|gb|EEV51381.1| DNA repair protein RadC [Enterococcus faecium 1,141,733]
          Length = 230

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL++FG +  + +++   L  I GI +  A +I  
Sbjct: 52  NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87


>gi|302874957|ref|YP_003843590.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
 gi|307690425|ref|ZP_07632871.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
 gi|302577814|gb|ADL51826.1| Holliday junction DNA helicase RuvA [Clostridium cellulovorans
           743B]
          Length = 194

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMIS--RSSPET--LASIEGISKKIACKI 603
            ++ L  ING+G      LL   GTV  +    ++ +   +    GI KK A +I
Sbjct: 71  LFTMLLNINGVGTKAALSLLS-IGTVNNLKYAIATSDENFITKAPGIGKKTAQRI 124


>gi|46445706|ref|YP_007071.1| putative protein required for chromosomal DNA transformation
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399347|emb|CAF22796.1| putative protein required for chromosomal DNA transformation
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 363

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            L ++  IGP++ R L+  FG+ K    +S   L+ + G       KI + + ++   
Sbjct: 9   ILTDMPLIGPVKVRFLVDYFGSAKKALSASITELSHLPGFK----QKILDQWQEHIRS 62


>gi|319407733|emb|CBI81380.1| holliday junction DNA helicase RuvA [Bartonella sp. 1-1C]
          Length = 215

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 27/118 (22%)

Query: 509 KFFVKKGEALVLNMRDPILYFI--QRLRDEAHR---FAITTHRKRRKKAAYSP------L 557
             F+       L      L       +R+EA R   FA             S       L
Sbjct: 27  IIFIPNRLHSSLPAIGESLSLFIETHVREEAIRLFGFA-----------TKSEQEWFCLL 75

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRS-SPETLASI---EGISKKIACKIYNHFHKNT 611
             + G+G      +L S  +V  ++++ +   +A+I    G+ KK++ +I +     T
Sbjct: 76  QNVPGVGAKVALAILGSL-SVNELTQAITLNDIATISRAPGVGKKVSERIVSELKNKT 132


>gi|319404769|emb|CBI78370.1| holliday junction DNA helicase RuvA [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 215

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 27/118 (22%)

Query: 509 KFFVKKGEALVLNMRDPILYFI--QRLRDEAHR---FAITTHRKRRKKAAYSP------L 557
             F+       L      L       +R+EA R   FA             S       L
Sbjct: 27  IIFIPNRLHSSLPAIGESLSLFIETHVREEAIRLFGFA-----------TKSEQEWFCLL 75

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRS-SPETLASI---EGISKKIACKIYNHFHKNT 611
             + G+G      +L S  +V  ++++ +   +A+I    G+ KK++ +I +     T
Sbjct: 76  QNVPGVGAKVALAILGSL-SVNELTQAITLNDIATISRTPGVGKKVSERIVSELKNKT 132


>gi|313203476|ref|YP_004042133.1| holliday junction DNA helicase subunit ruva [Paludibacter
           propionicigenes WB4]
 gi|312442792|gb|ADQ79148.1| Holliday junction DNA helicase subunit RuvA [Paludibacter
           propionicigenes WB4]
          Length = 196

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 521 NMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM 580
                 LY  + +R++AH   +   R + ++  +  L  ++GIG    R+++ S+ + + 
Sbjct: 40  EHTSAKLYVYESIREDAH--VLYGFRLQSERQLFLLLISVSGIGANTARMIMSSY-SAQE 96

Query: 581 ISR--SS--PETLASIEGISKKIACKI 603
           I    +S     L +I+GI  K A +I
Sbjct: 97  IQDMIASGNVSALNAIKGIGTKTAQRI 123


>gi|229065415|ref|ZP_04200668.1| hypothetical protein bcere0026_54300 [Bacillus cereus AH603]
 gi|228715863|gb|EEL67629.1| hypothetical protein bcere0026_54300 [Bacillus cereus AH603]
          Length = 73

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 19 AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIK 78
             +L+VGK   +++RIK +   N    +      ++  I   +    +E  + E  MI 
Sbjct: 2  NDELLFVGKVRKVRQRIKKHFEDNVSPIKNHR--DEVYRIDVCIVENPMEREIYETYMIN 59

Query: 79 RLKPRFNI 86
            + ++N+
Sbjct: 60 EFQAKYNV 67


>gi|322385784|ref|ZP_08059428.1| competence protein CelA [Streptococcus cristatus ATCC 51100]
 gi|321270522|gb|EFX53438.1| competence protein CelA [Streptococcus cristatus ATCC 51100]
          Length = 231

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 12/60 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606
           A  + L  ++GIG  + + ++           +     S + L ++ GI  K   K+ ++
Sbjct: 174 ATEAELQTVSGIGQKKAQDIIAY-------REANGKFKSVDELKNVSGIGAKTLEKLKDY 226


>gi|294670237|ref|ZP_06735130.1| DNA topoisomerase [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291307974|gb|EFE49217.1| DNA topoisomerase [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 150

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 15/67 (22%)

Query: 557 LDEINGIGPLRKRLLLQSFG--TVK---------MISRSSPETLASIEGISKKIACKIYN 605
           L+ I   G   K+ L   FG  +            I+ ++ E L ++ GI    A  I +
Sbjct: 33  LELIKK-GAGMKKAL---FGLLSYAVTALALAAVNINTATVEELKALPGIGPAKAQAIVD 88

Query: 606 HFHKNTS 612
           +  +N +
Sbjct: 89  YRKENGN 95



 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L  + GIGP + + ++        F +V        E L  ++GI + I  K+ +
Sbjct: 71  ELKALPGIGPAKAQAIVDYRKENGNFKSV--------EDLKKVKGIGEGIFGKLKD 118


>gi|251773315|gb|EES53864.1| hypothetical protein UBAL3_44810002 [Leptospirillum
           ferrodiazotrophum]
          Length = 174

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 6   MPECPGVY----QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           +P  PGVY     M      ++Y+G + NL++R+  ++  + +  R+   IS     R+ 
Sbjct: 83  VPYEPGVYEIRSFMPGTPEGIVYIGSSGNLRRRLAHHLTGSGNNLRLREKISGGARFRYQ 142

Query: 62  V 62
           V
Sbjct: 143 V 143


>gi|55379625|ref|YP_137475.1| NAD-dependent DNA ligase LigA [Haloarcula marismortui ATCC 43049]
 gi|74516349|sp|Q5UY84|DNLJ_HALMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|55232350|gb|AAV47769.1| DNA ligase [Haloarcula marismortui ATCC 43049]
          Length = 691

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNHF 607
            I  +G +  R L Q FGT + I  +      +   ++  + + +A  I   F
Sbjct: 532 GIPEVGTVTARNLAQEFGTFEAILDAADEGDTDAFEAVPDVGQTVARSIVEFF 584


>gi|47095437|ref|ZP_00233047.1| comE operon protein 1 [Listeria monocytogenes str. 1/2a F6854]
 gi|258612162|ref|ZP_05268183.2| comE operon protein 1 [Listeria monocytogenes F6900]
 gi|293596550|ref|ZP_05262170.2| comE operon protein 1 [Listeria monocytogenes J2818]
 gi|47016258|gb|EAL07181.1| comE operon protein 1 [Listeria monocytogenes str. 1/2a F6854]
 gi|258609079|gb|EEW21687.1| comE operon protein 1 [Listeria monocytogenes F6900]
 gi|293590130|gb|EFF98464.1| comE operon protein 1 [Listeria monocytogenes J2818]
          Length = 211

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 160 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 208


>gi|182420014|ref|ZP_02951248.1| DNA integrity scanning protein DisA [Clostridium butyricum 5521]
 gi|237666430|ref|ZP_04526415.1| DNA integrity scanning protein DisA [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376051|gb|EDT73638.1| DNA integrity scanning protein DisA [Clostridium butyricum 5521]
 gi|237657629|gb|EEP55184.1| DNA integrity scanning protein DisA [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 354

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L ++  I       L++ F  +  I  +  + L  +EGI +  A  I N   +
Sbjct: 290 ILSKVPRIPSNVIENLIKEFEDLSSIIEADIDDLDKVEGIGEARATAIKNGLKR 343


>gi|58038327|ref|YP_190296.1| hypothetical protein GOX2576 [Gluconobacter oxydans 621H]
 gi|58000741|gb|AAW59640.1| hypothetical protein GOX2576 [Gluconobacter oxydans 621H]
          Length = 146

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 25/103 (24%)

Query: 6   MPECPGVYQMLDIAGRVLYVGKA-YNLQKRIKSYMHSNNHT--HRITHMISQ------IN 56
           +P  PGVY    +   VLYVG A   L KR++ Y  S N     RI   + +      + 
Sbjct: 43  VPSKPGVYA-YAVDQEVLYVGSAQRGLHKRLRHYESSKNLRTATRIREAVLERLSHGTVV 101

Query: 57  NIRFTVTCTEVEALL------------LEANMIKRLKPRFNIL 87
           ++   V     E L             LE  +I+ +KP +N  
Sbjct: 102 DVYVIVLE---EPLTLHGGLPVDPVAGLEEGLIRDIKPTWNRR 141


>gi|15896108|ref|NP_349457.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD
           [Clostridium acetobutylicum ATCC 824]
 gi|15025899|gb|AAK80797.1|AE007783_4 ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD
           [Clostridium acetobutylicum ATCC 824]
 gi|325510262|gb|ADZ21898.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit [Clostridium
           acetobutylicum EA 2018]
          Length = 739

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I+GIGP+  + ++  FG  T++ I  +    L+ IEGI KK   KIY  + +
Sbjct: 89  ISGIGPVTAKKIVNKFGEKTLE-ILDNDIYRLSEIEGIGKKKIDKIYEAYSE 139


>gi|15613787|ref|NP_242090.1| Holliday junction DNA helicase RuvA [Bacillus halodurans C-125]
 gi|20140284|sp|Q9KDI9|RUVA_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|10173840|dbj|BAB04943.1| holliday junction DNA helicase [Bacillus halodurans C-125]
          Length = 203

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 510 FFVKKGEALVLNMRD-PILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRK 568
            +                +Y  Q +R++  R  +   R + K++ +  L  ++GIGP   
Sbjct: 28  VYCPNPYEFEKERDSVITIYTFQYVREDVIR--LYGFRTKEKRSLFEKLLNVSGIGPKGA 85

Query: 569 RLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
             +L + G  + + ++  E     L    G+ KK A +I
Sbjct: 86  LAILAT-GQPEHVIQAIEEEDEAFLVKFPGVGKKTARQI 123


>gi|332799163|ref|YP_004460662.1| DNA protecting protein DprA [Tepidanaerobacter sp. Re1]
 gi|332696898|gb|AEE91355.1| DNA protecting protein DprA [Tepidanaerobacter sp. Re1]
          Length = 364

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            A    L+ I  +G ++ + L + F       ++ PE L  I GI K I   I
Sbjct: 4   NALLIALNAIPKLGSIKIQSLAEKFKCYDDFLKAKPEDLLEIPGIGKIICENI 56


>gi|242220518|ref|XP_002476024.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724747|gb|EED78769.1| predicted protein [Postia placenta Mad-698-R]
          Length = 186

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              + L  I+ +       L  SFG+   ISR++ E L ++ G  +  A ++ +   K
Sbjct: 127 MLRTALTSISKVNKTDVETLRTSFGSFAAISRATTEQLQNLPGFGQVKAKRVVDALEK 184


>gi|325290555|ref|YP_004266736.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965956|gb|ADY56735.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 191

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LD I GIGP   + ++        +   +PE L ++ GI +K   K+  + 
Sbjct: 138 ELDRIPGIGPALAKRIIDYRKD-NGLYN-TPEDLKNVSGIGEKTYEKMSGYL 187


>gi|284051638|ref|ZP_06381848.1| DNA protecting protein DprA [Arthrospira platensis str. Paraca]
          Length = 377

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +I+GIGP+  + L + FG++    ++SP  L S+EG  ++   K+
Sbjct: 13  QIHGIGPITLQRLQERFGSLATAWQASPMELGSVEGFGRQSLEKV 57


>gi|289580814|ref|YP_003479280.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
 gi|289530367|gb|ADD04718.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
          Length = 586

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYN 605
           I G+GP     L +  G  T+  +  ++    +  ++G   K    I +
Sbjct: 102 IEGVGPKTAGKLYRELGIETLDDLEDAAEAGEIQEVKGFGPKTEENIRD 150


>gi|218131107|ref|ZP_03459911.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697]
 gi|217986811|gb|EEC53144.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697]
          Length = 666

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF  ++ +  +  E L SI+ I +KIA  I  +F
Sbjct: 516 VGETVAKKIAKSFNNIEELENADLEKLTSIDEIGEKIAQSILIYF 560


>gi|169629277|ref|YP_001702926.1| 5'-3' exonuclease [Mycobacterium abscessus ATCC 19977]
 gi|169241244|emb|CAM62272.1| Probable 5'-3' exonuclease [Mycobacterium abscessus]
          Length = 337

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + G+G      LL  FG++  I  +
Sbjct: 228 LPGVPGVGEKTAAKLLAEFGSLDGILTA 255


>gi|82701529|ref|YP_411095.1| DNA processing protein DprA, putative [Nitrosospira multiformis
           ATCC 25196]
 gi|82409594|gb|ABB73703.1| DNA protecting protein DprA [Nitrosospira multiformis ATCC 25196]
          Length = 372

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            LD I+G+G    R LL +FG+   I  +S  +L  +  + +K+A  I
Sbjct: 23  ALDLIDGLGDESMRCLLATFGSPAAILSASMTSLERV--VKRKVADNI 68


>gi|17230931|ref|NP_487479.1| hypothetical protein all3439 [Nostoc sp. PCC 7120]
 gi|17132572|dbj|BAB75138.1| all3439 [Nostoc sp. PCC 7120]
          Length = 125

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 5  QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH 44
           +P  PG+Y +      +LY+GK  +L+ R        + 
Sbjct: 36 DIPPHPGIYAIRHKNDGLLYIGKTKSLRGR----FSGGHK 71


>gi|255030876|ref|ZP_05302827.1| hypothetical protein LmonL_20341 [Listeria monocytogenes LO28]
          Length = 199

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 148 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 196


>gi|70608422|gb|AAZ04486.1| DNA repair protein RadC [Acetobacter aceti]
          Length = 274

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 16/74 (21%)

Query: 543 TTHRKR-RKKAAYS---------PLDEINGIGPLRK------RLLLQSFGTVKMISRSSP 586
           T HRKR R++              L+ +  +G  RK      + L+ +FG+ + +  +  
Sbjct: 44  TGHRKRMRQRVMAQGAAALADYELLEMLLYVGVPRKDTKPLAKSLINAFGSFQAVIEAKE 103

Query: 587 ETLASIEGISKKIA 600
           E L  I G+++  A
Sbjct: 104 EDLRQIGGVTRASA 117


>gi|145222033|ref|YP_001132711.1| DNA integrity scanning protein DisA [Mycobacterium gilvum PYR-GCK]
 gi|145214519|gb|ABP43923.1| protein of unknown function DUF147 [Mycobacterium gilvum PYR-GCK]
          Length = 373

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L+++FG+++ +  +S   L S++GI    A  I     +    T
Sbjct: 324 LVRNFGSLQGLLAASASDLQSVDGIGSMWARHIREGLSQLAEST 367


>gi|317477010|ref|ZP_07936252.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906803|gb|EFV28515.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA]
          Length = 666

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF  ++ +  +  E L SI+ I +KIA  I  +F
Sbjct: 516 VGETVAKKIAKSFNNIEELENADLEKLTSIDEIGEKIAQSILIYF 560


>gi|257897231|ref|ZP_05676884.1| DNA repair protein RadC [Enterococcus faecium Com12]
 gi|293378003|ref|ZP_06624181.1| DNA repair protein RadC [Enterococcus faecium PC4.1]
 gi|293570378|ref|ZP_06681435.1| DNA repair protein RadC [Enterococcus faecium E980]
 gi|257833796|gb|EEV60217.1| DNA repair protein RadC [Enterococcus faecium Com12]
 gi|291609556|gb|EFF38821.1| DNA repair protein RadC [Enterococcus faecium E980]
 gi|292643368|gb|EFF61500.1| DNA repair protein RadC [Enterococcus faecium PC4.1]
          Length = 230

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL++FG +  + +++   L  I GI +  A +I  
Sbjct: 52  NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87


>gi|164686703|ref|ZP_02210731.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
           16795]
 gi|164604093|gb|EDQ97558.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
           16795]
          Length = 674

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L   F  +  +  ++ + L ++E   + +A  +   F +  +
Sbjct: 508 GIKLIGTKAAKILASEFKDLDKLMSATEQELINLEEFGQTMADSVVEFFKEEKN 561


>gi|150005913|ref|YP_001300657.1| exonuclease V subunit alpha [Bacteroides vulgatus ATCC 8482]
 gi|149934337|gb|ABR41035.1| ATP-dependent exonuclease V, alpha subunit - helicase superfamily I
           member [Bacteroides vulgatus ATCC 8482]
          Length = 753

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  + GIGP   +L+++ FG  T+ +I     E L  + GI KK   KI
Sbjct: 83  KYLGSGL--VKGIGPKFAQLIVRQFGLETIDVIET-DIERLYEVPGIGKKRVEKI 134


>gi|157961514|ref|YP_001501548.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
 gi|190359287|sp|A8H376|DNLJ_SHEPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157846514|gb|ABV87013.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
          Length = 668

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 18/45 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F T++ +  +S E    ++ +   +A  + +  
Sbjct: 520 VGEATAANLAAYFKTLEALKAASAEEFIKVDDVGTIVAAHLAHFL 564


>gi|157136934|ref|XP_001663869.1| excision repair cross-complementing 1 ercc1 [Aedes aegypti]
 gi|108869820|gb|EAT34045.1| excision repair cross-complementing 1 ercc1 [Aedes aegypti]
          Length = 249

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
             S L  I  +       L+Q++GT+  +  SS E L+   G+  + A K++  F++N
Sbjct: 188 LVSALTNIKPVNKTDAMTLIQNYGTLANMINSSEEKLSLCSGLGPRKAKKLHKTFNEN 245


>gi|161501897|ref|YP_219549.2| Holliday junction DNA helicase motor protein [Chlamydophila abortus
           S26/3]
 gi|90134722|sp|Q5L6Z3|RUVA_CHLAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
          Length = 207

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 562 GIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACKI 603
           G+GP     +L +F ++     I+R+   + +AS+ GI KK A K+
Sbjct: 81  GVGPKTGLAILNTF-SLSQLCSIARAEDIKAIASVPGIGKKTAEKL 125


>gi|62147831|emb|CAH63577.1| putative holliday junction DNA helicase RuvA [Chlamydophila abortus
           S26/3]
          Length = 222

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 562 GIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACKI 603
           G+GP     +L +F ++     I+R+   + +AS+ GI KK A K+
Sbjct: 96  GVGPKTGLAILNTF-SLSQLCSIARAEDIKAIASVPGIGKKTAEKL 140


>gi|329767007|ref|ZP_08258535.1| DNA ligase [Gemella haemolysans M341]
 gi|328837732|gb|EGF87357.1| DNA ligase [Gemella haemolysans M341]
          Length = 663

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
            +  S LD+      I  +G    ++L + +  +  +  ++ + L +++ + +  A  I 
Sbjct: 494 NSKKSSLDKVIFALGILNVGKKAGKILAEKYLNLSNLMNATLDELVNLDDVGQITAESIL 553

Query: 605 NHF 607
           ++ 
Sbjct: 554 DYL 556


>gi|317497793|ref|ZP_07956105.1| RecD/TraA family helicase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894906|gb|EFV17076.1| RecD/TraA family helicase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 755

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I G+GP   + + + F   T ++I    PE LA ++GIS+K A  I
Sbjct: 88  IKGVGPALAKRITKKFKMDTFRVIEE-EPERLAEVKGISEKKARAI 132


>gi|317123791|ref|YP_004097903.1| hypothetical protein Intca_0631 [Intrasporangium calvum DSM 43043]
 gi|315587879|gb|ADU47176.1| protein of unknown function DUF147 [Intrasporangium calvum DSM
           43043]
          Length = 359

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 17/39 (43%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             L+  F +++ +  +  E L  ++G+ +  A  +    
Sbjct: 308 ERLVNHFESLQRLLAAGIEDLMLVDGVGEGRARAVREGL 346


>gi|229918406|ref|YP_002887052.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b]
 gi|259495643|sp|C4L522|RUVA_EXISA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229469835|gb|ACQ71607.1| Holliday junction DNA helicase RuvA [Exiguobacterium sp. AT1b]
          Length = 195

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPET--LASIEGISKKI 599
             R RR++  ++ L  ++GIGP     ++ S G +  +  +  +     L    G+ KK 
Sbjct: 60  GFRSRRERELFNKLLSVSGIGPKGALAIVAS-GDIDALIDAIETENEKYLTKFPGVGKKT 118

Query: 600 ACK 602
           A +
Sbjct: 119 AKQ 121


>gi|160893718|ref|ZP_02074502.1| hypothetical protein CLOL250_01272 [Clostridium sp. L2-50]
 gi|156864703|gb|EDO58134.1| hypothetical protein CLOL250_01272 [Clostridium sp. L2-50]
          Length = 749

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I G+G    + +++ F   ++++I    PE LA ++GIS++ A  I   +++
Sbjct: 87  IKGVGEALAKRIVKKFKMDSLRIIEE-EPERLAEVKGISERKARDIAVSYNE 137


>gi|157117886|ref|XP_001653084.1| excision repair cross-complementing 1 ercc1 [Aedes aegypti]
 gi|108875925|gb|EAT40150.1| excision repair cross-complementing 1 ercc1 [Aedes aegypti]
          Length = 249

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
             S L  I  +       L+Q++GT+  +  SS E L+   G+  + A K++  F++N
Sbjct: 188 LVSALTNIKPVNKTDAMTLIQNYGTLANMINSSEEKLSLCSGLGPRKAKKLHKTFNEN 245


>gi|84514871|ref|ZP_01002234.1| DNA repair protein RadC [Loktanella vestfoldensis SKA53]
 gi|84511030|gb|EAQ07484.1| DNA repair protein RadC [Loktanella vestfoldensis SKA53]
          Length = 220

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           R L+  FG    +  +S   +  + G    +A ++ 
Sbjct: 44  RALIDHFGDFNRVLSASVTQIGQVPGAGPAVALELK 79


>gi|291520056|emb|CBK75277.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
           uptake [Butyrivibrio fibrisolvens 16/4]
          Length = 256

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  I+G+G   +R LL  FG  + I  +    L    G+ K     I N 
Sbjct: 10  LTNISGVGIKTQRNLLNWFGNPRNIYEADIAVLLE-TGVGKNRCESIVNA 58


>gi|258611456|ref|ZP_05232459.2| comE operon protein 1 [Listeria monocytogenes FSL N3-165]
 gi|258600152|gb|EEW13477.1| comE operon protein 1 [Listeria monocytogenes FSL N3-165]
          Length = 203

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 152 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 200


>gi|157414332|ref|YP_001481588.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 81116]
 gi|77386119|gb|ABA77536.1| putative non-specific DNA binding protein [Campylobacter jejuni]
 gi|157385296|gb|ABV51611.1| putative non-specific DNA binding protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|315931296|gb|EFV10265.1| comE1 [Campylobacter jejuni subsp. jejuni 327]
          Length = 79

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYN 605
           A    L  +NGIG  + + +L+          +   S + L  ++GI  K+  KI N
Sbjct: 24  ATLKELKSLNGIGEAKAKSILEY------RKEANFTSIDDLKKVKGIGDKLFEKIKN 74


>gi|257899232|ref|ZP_05678885.1| DNA repair protein RadC [Enterococcus faecium Com15]
 gi|257837144|gb|EEV62218.1| DNA repair protein RadC [Enterococcus faecium Com15]
          Length = 230

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL++FG +  + +++   L  I GI +  A +I  
Sbjct: 52  NLLKTFGGLASLRQATLHELEEIRGIGRVKAIEIKA 87


>gi|224500497|ref|ZP_03668846.1| hypothetical protein LmonF1_12841 [Listeria monocytogenes Finland
           1988]
 gi|224501576|ref|ZP_03669883.1| hypothetical protein LmonFR_03497 [Listeria monocytogenes FSL
           R2-561]
 gi|254829757|ref|ZP_05234412.1| hypothetical protein Lmon1_00310 [Listeria monocytogenes 10403S]
 gi|254898350|ref|ZP_05258274.1| hypothetical protein LmonJ_01005 [Listeria monocytogenes J0161]
 gi|284801871|ref|YP_003413736.1| hypothetical protein LM5578_1626 [Listeria monocytogenes 08-5578]
 gi|284995013|ref|YP_003416781.1| hypothetical protein LM5923_1578 [Listeria monocytogenes 08-5923]
 gi|284057433|gb|ADB68374.1| hypothetical protein LM5578_1626 [Listeria monocytogenes 08-5578]
 gi|284060480|gb|ADB71419.1| hypothetical protein LM5923_1578 [Listeria monocytogenes 08-5923]
          Length = 200

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 149 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 197


>gi|167768241|ref|ZP_02440294.1| hypothetical protein CLOSS21_02797 [Clostridium sp. SS2/1]
 gi|167709765|gb|EDS20344.1| hypothetical protein CLOSS21_02797 [Clostridium sp. SS2/1]
          Length = 776

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I G+GP   + + + F   T ++I    PE LA ++GIS+K A  I
Sbjct: 109 IKGVGPALAKRITKKFKMDTFRVIEE-EPERLAEVKGISEKKARAI 153


>gi|291560255|emb|CBL39055.1| helicase, putative, RecD/TraA family [butyrate-producing bacterium
           SSC/2]
          Length = 776

 Score = 42.8 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I G+GP   + + + F   T ++I    PE LA ++GIS+K A  I
Sbjct: 109 IKGVGPALAKRITKKFKMDTFRVIEE-EPERLAEVKGISEKKARAI 153


>gi|37520198|ref|NP_923575.1| exodeoxyribonuclease V alpha chain [Gloeobacter violaceus PCC 7421]
 gi|35211191|dbj|BAC88570.1| exodeoxyribonuclease V alpha chain [Gloeobacter violaceus PCC 7421]
          Length = 745

 Score = 42.8 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 17/85 (20%)

Query: 537 AHRFAITTHRKRR-------KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE 587
           AHR     H + R       +K   S L  I G+GP+  R ++  FG  +++ I  S   
Sbjct: 84  AHR-----HEETRPATIGGLEKYLGSGL--IKGVGPVTARRIVAHFGLASLE-IIESDCS 135

Query: 588 TLASIEGISKKIACKIYNHFHKNTS 612
            LA + G+       I   + +  +
Sbjct: 136 RLAEVPGVGAHRIRLIQAAWQEQKA 160


>gi|16803524|ref|NP_465009.1| hypothetical protein lmo1484 [Listeria monocytogenes EGD-e]
 gi|16410913|emb|CAC99562.1| comEA [Listeria monocytogenes EGD-e]
          Length = 200

 Score = 42.8 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 149 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 197


>gi|291571641|dbj|BAI93913.1| DNA processing protein [Arthrospira platensis NIES-39]
          Length = 377

 Score = 42.8 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +I+GIGP+  + L + FG++    ++SP  L S+EG  ++   K+
Sbjct: 13  QIHGIGPITLQRLQERFGSLATAWQASPIELGSVEGFGRQSLEKV 57


>gi|288554984|ref|YP_003426919.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
 gi|288546144|gb|ADC50027.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
          Length = 668

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           +G    + L   F ++  I  +    L ++  I +K+A  I   F  + 
Sbjct: 515 VGSKAAKTLAMEFESIDAIIEADEAALVAVNEIGEKMAASIVRFFETDE 563


>gi|188997399|ref|YP_001931650.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932466|gb|ACD67096.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 299

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 11/56 (19%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I GIGP     LLQ FG+++ I       L +++    K+  K+   F +     
Sbjct: 188 GIKGIGPKTAAALLQEFGSLENI-------LENVD----KLKGKLKESFKELDKEQ 232


>gi|149051315|gb|EDM03488.1| rCG61693 [Rattus norvegicus]
          Length = 487

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+  +    +   F +VK +  SSPE +++   ++ + A +IY + H
Sbjct: 413 SIPGVSYVTALNMCHQFSSVKKMVNSSPEEISTCAQVTHQKAEEIYKYIH 462


>gi|217967490|ref|YP_002352996.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Dictyoglomus turgidum DSM 6724]
 gi|217336589|gb|ACK42382.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Dictyoglomus turgidum DSM 6724]
          Length = 187

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L+ + GIGP   + +++       FG+         E L +++GI +K   +I +
Sbjct: 132 ASKEELESLPGIGPTLAQRIIEYREENGPFGSA--------EDLLNVKGIGEKKLERIRD 183



 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S E L S+ GI   +A +I  +
Sbjct: 128 NINTASKEELESLPGIGPTLAQRIIEY 154


>gi|166216289|sp|A4VKN0|DNLJ_PSEU5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 788

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +LL ++ G++  I R+ P+ L  +  +  ++A +I++ F    + T
Sbjct: 538 GIPDVGEETAKLLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFFEDEHNRT 593



 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 557 LD--EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           LD   I  I     + L + FG+++ I  +    L  +E +++K A  + ++F K  +
Sbjct: 625 LDRLNIPHIARTGAQRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKPEN 682


>gi|146282220|ref|YP_001172373.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri A1501]
 gi|145570425|gb|ABP79531.1| DNA ligase, NAD-dependent [Pseudomonas stutzeri A1501]
          Length = 802

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +LL ++ G++  I R+ P+ L  +  +  ++A +I++ F    + T
Sbjct: 552 GIPDVGEETAKLLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFFEDEHNRT 607



 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 557 LD--EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           LD   I  I     + L + FG+++ I  +    L  +E +++K A  + ++F K  +
Sbjct: 639 LDRLNIPHIARTGAQRLAERFGSLEAIIAADWLDLRQVERLTEKAARSLRDYFDKPEN 696


>gi|122971128|sp|Q14L37|DNLJ_SPICI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110005471|emb|CAK99793.1| dna ligase protein [Spiroplasma citri]
          Length = 667

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LL + F T+  ++  + E L+ I  I   +A  + ++F
Sbjct: 513 GIRHVGQKTAKLLARQFKTIDNLAAMNIEQLSIINDIGPIVAASVVDYF 561


>gi|262283172|ref|ZP_06060939.1| competence protein CelA [Streptococcus sp. 2_1_36FAA]
 gi|262261424|gb|EEY80123.1| competence protein CelA [Streptococcus sp. 2_1_36FAA]
          Length = 222

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 12/52 (23%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606
           I+GIG  R + ++           +     S + L ++ GI  K   K+  +
Sbjct: 174 ISGIGQKRAQDIIAY-------REANGRFKSVDDLKNVSGIGAKTLEKLKEY 218


>gi|258544861|ref|ZP_05705095.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
 gi|258519884|gb|EEV88743.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
          Length = 668

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G +   LL + +  +  +  +S + L +I+GI   +A  I + F
Sbjct: 518 VGNVSAELLARHYRELPALLAASEDDLQAIDGIGPVMAQYIRHFF 562


>gi|229817619|ref|ZP_04447901.1| hypothetical protein BIFANG_02887 [Bifidobacterium angulatum DSM
           20098]
 gi|229785408|gb|EEP21522.1| hypothetical protein BIFANG_02887 [Bifidobacterium angulatum DSM
           20098]
          Length = 217

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMI-SRSSPETLASIEGISKKIACK 602
           A    LD I+GIGP+  R +L      + I   SS + L  + GI  K   K
Sbjct: 162 ATLEELDSISGIGPVTARKILDY---RQRIGMFSSVDQLLEVSGIGVKTLEK 210



 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           G +  ++ ++ E L SI GI    A KI ++
Sbjct: 154 GGLVNLNTATLEELDSISGIGPVTARKILDY 184


>gi|157149750|ref|YP_001450880.1| competence protein CelA [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074544|gb|ABV09227.1| competence protein CelA [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 221

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 12/52 (23%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606
           I+GIG  R + ++           +     S + L ++ GI  K   K+  +
Sbjct: 173 ISGIGQKRAQDIIAY-------REANGRFKSVDDLKNVSGIGAKTLEKLKEY 217


>gi|30020835|ref|NP_832466.1| UvrC-like protein [Bacillus cereus ATCC 14579]
 gi|29896387|gb|AAP09667.1| UvrC-like protein [Bacillus cereus ATCC 14579]
          Length = 111

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
          G++   +I   +L+VGKA  +++RIK +   N    +      ++  I   +  
Sbjct: 47 GIFMFYNINDELLFVGKARKIRQRIKKHFEDNVSPIKNHR--DEVYRIDACIVE 98


>gi|330718512|ref|ZP_08313112.1| Holliday junction DNA helicase RuvA [Leuconostoc fallax KCTC 3537]
          Length = 196

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET------LASIEGISKKIACKI 603
           K  ++ L +++GIGP     +L    +   I  +S         L    G+ KK A +I
Sbjct: 66  KKLFNKLLDVSGIGPKSALAILA---SDSAIGLASAVENDDVSYLTQFPGVGKKTAQQI 121


>gi|322829896|gb|EFZ33131.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             +G+V  +  +S E LAS+ G   K A +++   H
Sbjct: 176 HRYGSVAELLTASLEDLASLPGFGPKRAGRLHTVLH 211


>gi|71666978|ref|XP_820443.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70885787|gb|EAN98592.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             +G+V  +  +S E LAS+ G   K A +++   H
Sbjct: 176 HRYGSVAELLTASLEDLASLPGFGPKRAGRLHTVLH 211


>gi|320352593|ref|YP_004193932.1| helicase, RecD/TraA family [Desulfobulbus propionicus DSM 2032]
 gi|320121095|gb|ADW16641.1| helicase, RecD/TraA family [Desulfobulbus propionicus DSM 2032]
          Length = 832

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 549 RKKAAYSPLDE------INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIA 600
           RK A  + L++      I G+GP   + ++  FG  T+  +     E L  + GI++K  
Sbjct: 86  RKPATSAALEKYLGSGLIKGVGPKTAKRIVAHFGEQTL-AVFEGEKERLLEVPGIARKKL 144

Query: 601 CKI 603
             I
Sbjct: 145 EMI 147


>gi|315285698|gb|EFU45138.1| conserved hypothetical protein [Escherichia coli MS 110-3]
 gi|323956107|gb|EGB51859.1| hypothetical protein ERLG_02615 [Escherichia coli H263]
          Length = 646

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK  +     ++      E      RD     +  L+D A           R++     
Sbjct: 471 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 510

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 566

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 567 ASCERRFVFRPNEAVTP 583


>gi|307626383|gb|ADN70687.1| hypothetical protein UM146_06430 [Escherichia coli UM146]
          Length = 646

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK  +     ++      E      RD     +  L+D A           R++     
Sbjct: 471 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 510

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 566

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 567 ASCERRFVFRPNEAVTP 583


>gi|294492165|gb|ADE90921.1| conserved hypothetical protein [Escherichia coli IHE3034]
          Length = 646

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK  +     ++      E      RD     +  L+D A           R++     
Sbjct: 471 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 510

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 566

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 567 ASCERRFVFRPNEAVTP 583


>gi|237704528|ref|ZP_04535009.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226900894|gb|EEH87153.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 649

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK  +     ++      E      RD     +  L+D A           R++     
Sbjct: 474 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 513

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 514 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 569

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 570 ASCERRFVFRPNEAVTP 586


>gi|117624267|ref|YP_853180.1| hypothetical protein APECO1_1161 [Escherichia coli APEC O1]
 gi|218558951|ref|YP_002391864.1| hypothetical protein ECS88_2170 [Escherichia coli S88]
 gi|115513391|gb|ABJ01466.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218365720|emb|CAR03456.1| conserved hypothetical protein [Escherichia coli S88]
          Length = 649

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK  +     ++      E      RD     +  L+D A           R++     
Sbjct: 474 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 513

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 514 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 569

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 570 ASCERRFVFRPNEAVTP 586


>gi|91211359|ref|YP_541345.1| hypothetical protein UTI89_C2346 [Escherichia coli UTI89]
 gi|91072933|gb|ABE07814.1| hypothetical protein YegI [Escherichia coli UTI89]
          Length = 649

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK  +     ++      E      RD     +  L+D A           R++     
Sbjct: 474 IAKRARLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 513

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 514 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 569

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 570 ASCERRFVFRPNEAVTP 586


>gi|289616540|emb|CBI56705.1| putative MEI9 protein [Sordaria macrospora]
          Length = 940

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 73/227 (32%), Gaps = 33/227 (14%)

Query: 389 HIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDD--CAMMRMVLERRFSQ---LI 443
           H      V CM+ VG+     N   +     + + +  D         + + +     LI
Sbjct: 735 HARSMVIVPCMLTVGDYILSPNICVERKSVSDLISSFKDGRLYAQCETMFQHYRNPMLLI 794

Query: 444 KNEENLNFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKR 503
           + ++N +F  +       ++P + I+       +A      K   E    I ++  G   
Sbjct: 795 EFDQNKSFTLEPFADLSGTFPKLRIIWSSSPYETAEIFERLKTLEEEPDPIAAVRAGLGE 854

Query: 504 SAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGI 563
               E    +   ++                 EA                   L ++ G+
Sbjct: 855 GESPEDGVNEGKGSV----NGGAFNM------EA----------------QEMLGKVPGV 888

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            P   R ++    +V+ ++    E L  + G  ++ A KI + F K+
Sbjct: 889 TPKNIRNIMAEAESVREVANMGVEELGRLVG--REAAGKIVDFFKKD 933


>gi|242091551|ref|XP_002441608.1| hypothetical protein SORBIDRAFT_09g030240 [Sorghum bicolor]
 gi|241946893|gb|EES20038.1| hypothetical protein SORBIDRAFT_09g030240 [Sorghum bicolor]
          Length = 238

 Score = 42.8 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L  I GI       L Q+ G+++ I+++S E +     +S + A +I   F 
Sbjct: 175 VLTSIPGIDSHDANALAQAIGSIEAIAKASKEFILENTDLSTEKAERIVRFFR 227


>gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74]
 gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74]
          Length = 1024

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            I GIG    + L+  FG+V+ +  +  + L        K+   + N 
Sbjct: 198 GIPGIGEKTAQKLIADFGSVENLI-ARADELKG------KLKENVVNF 238


>gi|223044372|ref|ZP_03614406.1| comEA protein [Staphylococcus capitis SK14]
 gi|222442241|gb|EEE48352.1| comEA protein [Staphylococcus capitis SK14]
          Length = 226

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            A  + L  I G+GP + R ++      G  K I     E L  I+G  +K   K+  H 
Sbjct: 170 NATETDLKSIPGVGPSKAREIINYREQNGGFKNI-----EDLKKIKGFGEKTFEKLKEHL 224


>gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
 gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
          Length = 910

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           L  I GIG      L++ FG+++ +       +  + G
Sbjct: 211 LPGIPGIGEKTAAKLIRDFGSLQEL----VARIDEVPG 244


>gi|297616876|ref|YP_003702035.1| DNA repair protein RadC [Syntrophothermus lipocalidus DSM 12680]
 gi|297144713|gb|ADI01470.1| DNA repair protein RadC [Syntrophothermus lipocalidus DSM 12680]
          Length = 229

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 563 IGPLRKRL--------LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           IG   +          LL ++  ++ +  +S E L+++ GI    A ++    
Sbjct: 40  IGSGTREKTAVQLAEYLLATYRGLRSLRDASCEELSAVRGIGAAKATRLKAAL 92


>gi|296417785|ref|XP_002838532.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634473|emb|CAZ82723.1| unnamed protein product [Tuber melanosporum]
          Length = 354

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 30/98 (30%)

Query: 11  GVYQM--LDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITH------------------ 50
           GVY    LD     +YVG + NL  RI SY   +    +                     
Sbjct: 107 GVYVWGTLDSKN--MYVGHSINLYNRICSYFMPSILKTKERRVLRYLNKYGFTNLKLTIY 164

Query: 51  MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILL 88
           ++    ++   V   E     LE + I  L P  N+ L
Sbjct: 165 IMEDSASLEQIV---E-----LEQHFIDSLNPNLNVDL 194


>gi|154508559|ref|ZP_02044201.1| hypothetical protein ACTODO_01060 [Actinomyces odontolyticus ATCC
           17982]
 gi|293191352|ref|ZP_06609177.1| putative DNA-binding protein [Actinomyces odontolyticus F0309]
 gi|153798193|gb|EDN80613.1| hypothetical protein ACTODO_01060 [Actinomyces odontolyticus ATCC
           17982]
 gi|292820576|gb|EFF79549.1| putative DNA-binding protein [Actinomyces odontolyticus F0309]
          Length = 356

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTS 612
            F ++  +  ++ E L  +EGI    A  I  +  H+  +
Sbjct: 309 HFNSLPQLRAATVEDLEELEGIGPYRAKLITENLAHQAQA 348


>gi|119472555|ref|ZP_01614603.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
 gi|119444879|gb|EAW26179.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
          Length = 672

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 562 GI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           GI   G    + L   F T++ I  +S E+L  +  +   +A  +   F + 
Sbjct: 516 GIREAGEATAQNLANHFLTLENIISASVESLTQVSDVGDIVASHVRGFFDEE 567


>gi|28493351|ref|NP_787512.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist]
 gi|28572539|ref|NP_789319.1| DNA uptake protein [Tropheryma whipplei TW08/27]
 gi|28410671|emb|CAD67057.1| putative DNA uptake protein [Tropheryma whipplei TW08/27]
 gi|28476392|gb|AAO44481.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist]
          Length = 193

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 10/54 (18%)

Query: 556 PLDEINGIGPLRKRLLL----QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L  I GIG    + ++    +  G  K +     E L  I GI  K+   I +
Sbjct: 142 RLQSIKGIGKATAKRIIDWRNKH-GPFKRL-----EDLKKISGIGNKLIKSIKD 189


>gi|322373473|ref|ZP_08048009.1| competence protein CelA [Streptococcus sp. C150]
 gi|321278515|gb|EFX55584.1| competence protein CelA [Streptococcus sp. C150]
          Length = 231

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  I+GIG  R   ++      G  +     S + L ++ GI  K   KI  
Sbjct: 175 ATSEELQTISGIGAKRAEDIIAYRESHGGFQ-----SVDDLKNVSGIGDKTLEKIRE 226


>gi|320161003|ref|YP_004174227.1| putative DNA processing protein [Anaerolinea thermophila UNI-1]
 gi|319994856|dbj|BAJ63627.1| putative DNA processing protein [Anaerolinea thermophila UNI-1]
          Length = 370

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           + G+G +R R LL  FG++++   +  E L    G+S K    +  H  +  +
Sbjct: 13  VRGVGAVRFRTLLNHFGSLEIAWNAPQEALKEA-GLSPKSIQHL-QHLREEPN 63


>gi|319654841|ref|ZP_08008916.1| DNA-binding protein [Bacillus sp. 2_A_57_CT2]
 gi|317393404|gb|EFV74167.1| DNA-binding protein [Bacillus sp. 2_A_57_CT2]
          Length = 357

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L+++  + P+    L+  F     I  ++ E L  +EGI +  A KI     
Sbjct: 294 LNKVPRLPPIIIDNLINRFEEFPNIITATVEELDEVEGIGEVRARKIKEGLK 345


>gi|160942648|ref|ZP_02089892.1| hypothetical protein FAEPRAM212_00121 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446063|gb|EDP23066.1| hypothetical protein FAEPRAM212_00121 [Faecalibacterium prausnitzii
           M21/2]
          Length = 218

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 18/107 (16%)

Query: 1   MSSEQMPECPGVYQMLDIA---GRVL------YVGKAYNLQKRIKSYMHSNN--HTHRIT 49
           +  + +P+  GVY +        +++      Y+G++ N+  RI  +    +     +  
Sbjct: 93  LDKDDLPKKSGVYLVYAGKPVSDKIVSLRKLFYIGESSNIHDRIVEHNRDKDWKDGLKEG 152

Query: 50  HMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY 96
            ++     +       + E LL EA +I   KP +N    D  ++P+
Sbjct: 153 ELLYYAYAL-----APKDERLLEEAALIYYYKPPYNTEYVD--NYPF 192


>gi|255027258|ref|ZP_05299244.1| hypothetical protein LmonocytFSL_14638 [Listeria monocytogenes FSL
           J2-003]
          Length = 200

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 149 LQQVPGIGESKATAIIEY-REKEGLFQ-TIEDLKNVSGIGEKTVEKLKEYL 197


>gi|206900564|ref|YP_002251187.1| DNA-binding protein [Dictyoglomus thermophilum H-6-12]
 gi|206739667|gb|ACI18725.1| DNA-binding protein [Dictyoglomus thermophilum H-6-12]
          Length = 351

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              ++  FG +  I  SS E L +IEG+ +  A KI    
Sbjct: 303 IEKIVNYFGDLSKIMESSFEDLDNIEGVGEVRAKKIREAL 342


>gi|298713770|emb|CBJ27142.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 162

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG++K +  ++   L+   G+ +K   +I+   H+
Sbjct: 110 FGSLKAVCDATAGELSLCPGLGEKKVARIHEALHE 144


>gi|317153517|ref|YP_004121565.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
 gi|316943768|gb|ADU62819.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
          Length = 678

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 7/56 (12%), Positives = 24/56 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    R L   +  +  ++++  + L +++ +   +A  ++  F    + +
Sbjct: 518 GIRHVGEQTARTLAARYRDLDALAQADRDELLALDDVGPVVAESVHFFFRSEETRS 573


>gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
 gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
          Length = 978

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IG      LL ++G++  I  +  + + 
Sbjct: 210 DNIPGVKGIGEKTAVQLLNTYGSLDNIYAA-LDEIK 244


>gi|209524259|ref|ZP_03272809.1| DNA protecting protein DprA [Arthrospira maxima CS-328]
 gi|209495350|gb|EDZ95655.1| DNA protecting protein DprA [Arthrospira maxima CS-328]
          Length = 376

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +I+GIGP+  + L + FG++    ++SP  L S+EG  ++   K+
Sbjct: 13  KIHGIGPITLQRLQERFGSLATAWQASPMELGSVEGFGRQSLEKV 57


>gi|332523820|ref|ZP_08400072.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176]
 gi|332315084|gb|EGJ28069.1| ComE operon protein 1 [Streptococcus porcinus str. Jelinkova 176]
          Length = 228

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L +I GIG  R + ++    +     +   E L  I GI KK   K+ +
Sbjct: 177 LTKIPGIGEKRAKEIIDVRESQGGFKK--LEDLLKISGIGKKTLEKLKD 223


>gi|330990424|ref|ZP_08314384.1| hypothetical protein SXCC_00337 [Gluconacetobacter sp. SXCC-1]
 gi|329762507|gb|EGG78991.1| hypothetical protein SXCC_00337 [Gluconacetobacter sp. SXCC-1]
          Length = 186

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKI 603
           I GIGP+  + L+++FG     +I +  PE L  + GI  K A +I
Sbjct: 100 IRGIGPVYAKKLVKAFGEAVFDLIEQ-EPERLREVTGIGPKRAERI 144


>gi|330995009|ref|ZP_08318929.1| hypothetical protein SXCC_04894 [Gluconacetobacter sp. SXCC-1]
 gi|329757922|gb|EGG74446.1| hypothetical protein SXCC_04894 [Gluconacetobacter sp. SXCC-1]
          Length = 677

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKI 603
           I GIGP+  + L+++FG     +I +  PE L  + GI  K A +I
Sbjct: 49  IRGIGPVYAKKLVKAFGEAVFDLIEQ-EPERLREVTGIGPKRAERI 93


>gi|294671442|ref|ZP_06736289.1| hypothetical protein NEIELOOT_03152 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306861|gb|EFE48104.1| hypothetical protein NEIELOOT_03152 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 109

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ ++ E L ++ GI    A  I ++  +N +
Sbjct: 22  NINTATVEELKALPGIGPAKAQAIVDYRKENGN 54



 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L  + GIGP + + ++        F +V        E L  ++GI + I  K+ +
Sbjct: 30  ELKALPGIGPAKAQAIVDYRKENGNFKSV--------EDLKKVKGIGEGIFGKLKD 77


>gi|257438385|ref|ZP_05614140.1| putative DNA repair protein RadC [Faecalibacterium prausnitzii
           A2-165]
 gi|257199216|gb|EEU97500.1| putative DNA repair protein RadC [Faecalibacterium prausnitzii
           A2-165]
          Length = 241

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           L+  FG    +  +S E L ++EG+    A  ++
Sbjct: 53  LMDRFGDFAGVLDASEEDLLTVEGVGPSTARMLH 86


>gi|222151527|ref|YP_002560683.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus
           JCSC5402]
 gi|254766967|sp|B9E719|RUVA_MACCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|222120652|dbj|BAH17987.1| holliday junction DNA helicase RuvA [Macrococcus caseolyticus
           JCSC5402]
          Length = 193

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT-----VKMISRSSPETLASIEGISKKIACKI 603
           KA ++ L+++ GIGP     +L +  +     +K I   S   L    GI KK A +I
Sbjct: 68  KAMFNALNKVTGIGPKSALAILAT--STPQEIIKAIESESESYLIKFPGIGKKTARQI 123


>gi|218135320|ref|ZP_03464124.1| hypothetical protein BACPEC_03225 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990705|gb|EEC56716.1| hypothetical protein BACPEC_03225 [Bacteroides pectinophilus ATCC
           43243]
          Length = 757

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I GIG    + ++  FG  T ++I    PE LA I+GIS K A  I +  
Sbjct: 108 IRGIGEKTAQNIVNYFGADTFRIIEE-EPERLAEIKGISMKKAMDIADQL 156


>gi|171463268|ref|YP_001797381.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|254781389|sp|B1XTU0|DNLJ_POLNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171192806|gb|ACB43767.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 671

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 21/51 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L   + ++  +  +  E L +++ +   +A  I +   +
Sbjct: 521 GIRHVGETTAKDLANHYQSMHALMDAGVEDLLTVKDVGPVVADSITSFMQE 571


>gi|325957924|ref|YP_004289390.1| DNA repair and recombination protein radA [Methanobacterium sp.
           AL-21]
 gi|325329356|gb|ADZ08418.1| DNA repair and recombination protein radA [Methanobacterium sp.
           AL-21]
          Length = 311

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            L+E+  +G    + L  + F  +  ++ ++ + L+    I + +A K+     K+ 
Sbjct: 3   ELEELPNVGEKTAQKLRDAGFADMMRLATATAKELSVKAEIGEGVAEKVIEAARKSE 59


>gi|20094004|ref|NP_613851.1| flap endonuclease-1 [Methanopyrus kandleri AV19]
 gi|28380017|sp|Q8TXU4|FEN_METKA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|19886972|gb|AAM01781.1| 5'-3' exonuclease [Methanopyrus kandleri AV19]
          Length = 348

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISR 583
           D + GIGP R   L++ +G++  +  
Sbjct: 238 DGVPGIGPKRALQLIRKYGSLDELKD 263


>gi|295426520|ref|ZP_06819170.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM
           11664]
 gi|295063888|gb|EFG54846.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM
           11664]
          Length = 669

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 13/113 (11%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLN--MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554
           IAK    +   + + +   + + L+      I   +          AI   ++   +   
Sbjct: 460 IAKDLVHNVA-DLYHLTPDDLMQLDHFKEKSINNLLT---------AIDKSKQNSVELLL 509

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L  I+ +G    RL+ Q F  +  I  +  + +A+I+ I   IA  +  +F
Sbjct: 510 TGL-GIDHVGAKVARLISQKFKNLPKIMAADVQEVAAIDTIGPTIAESLTTYF 561


>gi|167763098|ref|ZP_02435225.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC
           43183]
 gi|167699438|gb|EDS16017.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC
           43183]
          Length = 665

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF  +  +  ++ E L +I+ I +KIA  I  +F
Sbjct: 515 VGETVAKKIAKSFNDIDELENANLEKLINIDEIGEKIAQSILTYF 559


>gi|305682056|ref|ZP_07404860.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
 gi|305658529|gb|EFM48032.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
          Length = 715

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    R L   + ++  +  ++ E +A  EG+   +A    + F
Sbjct: 538 VGNTASRALASRYRSLDALRAATVEDIAETEGVGLVMAQSFKDWF 582


>gi|302038035|ref|YP_003798357.1| hypothetical protein NIDE2726 [Candidatus Nitrospira defluvii]
 gi|300606099|emb|CBK42432.1| protein of unknown function, contains DNA-binding
           helix-hairpin-helix region [Candidatus Nitrospira
           defluvii]
          Length = 180

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 18/65 (27%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  S L  + GIGP   + ++        FG          E L  ++GI +K     ++
Sbjct: 112 ATASDLQALPGIGPKLAQRVIDHRTARGPFG--------KVEDLQQVKGIGRKK----FD 159

Query: 606 HFHKN 610
               +
Sbjct: 160 RLRPH 164


>gi|298369197|ref|ZP_06980515.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283200|gb|EFI24687.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
          Length = 830

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FG+++ + R+    LA +  I   +A  I + F ++    
Sbjct: 588 GIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVARSIAHFFAQDAQQA 643


>gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 921

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +G++  I       +A+++ +  KI+  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGSLDNI-------IANVDQLKGKISQNIKDNL 228


>gi|294669029|ref|ZP_06734115.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291309021|gb|EFE50264.1| DNA ligase, NAD-dependent [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 730

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FG+++ + R+    LA +  I   +A  I + F ++    
Sbjct: 495 GIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVARSIAHFFAQDAQQA 550


>gi|290559964|pdb|2WSH|A Chain A, Structure Of Bacteriophage T4 Endoii E118a Mutant
 gi|290559965|pdb|2WSH|B Chain B, Structure Of Bacteriophage T4 Endoii E118a Mutant
 gi|290559966|pdb|2WSH|C Chain C, Structure Of Bacteriophage T4 Endoii E118a Mutant
 gi|290559967|pdb|2WSH|D Chain D, Structure Of Bacteriophage T4 Endoii E118a Mutant
          Length = 143

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 22/93 (23%)

Query: 19  AGRVLYVGKAYNLQKRIKSYMHSNNHTHRI-----THMISQI----NNIRFT-------- 61
              ++Y+GK  NL+KRI  Y  + N   +      + +I       + + F         
Sbjct: 49  NDELVYIGKTKNLRKRINYYRTAINRKDKTSDSTKSALIHSALKEGSKVEFYARQCFNLS 108

Query: 62  ---VTCTEVEALL-LEANM-IKRLKPRFNILLR 89
                 T   A + LEA + IK   P +NI  +
Sbjct: 109 XTNELGTXTIATIDLEAPLFIKLFNPPWNIQHK 141


>gi|255067693|ref|ZP_05319548.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256]
 gi|255048034|gb|EET43498.1| DNA ligase, NAD-dependent [Neisseria sicca ATCC 29256]
          Length = 543

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FG+++ + R+    LA +  I   +A  I + F ++    
Sbjct: 308 GIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVARSIAHFFAQDAQQA 363


>gi|288575281|ref|ZP_06393611.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996]
 gi|288568349|gb|EFC89909.1| DNA ligase, NAD-dependent [Neisseria mucosa ATCC 25996]
          Length = 446

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FG+++ + R+    LA +  I   +A  I + F ++    
Sbjct: 211 GIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVARSIAHFFAQDAQQA 266


>gi|225022751|ref|ZP_03711943.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944472|gb|EEG25681.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 699

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    R L   + ++  +  ++ E +A  EG+   +A    + F
Sbjct: 531 VGNTASRALASRYRSLDALRAATVEDIAETEGVGLVMAQSFKDWF 575


>gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273]
 gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273]
          Length = 945

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IGP     LL  FG+++ + R   E L
Sbjct: 215 DNIPGAEGIGPKTATSLLARFGSLEEVYR-HIEEL 248


>gi|297616809|ref|YP_003701968.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
 gi|297144646|gb|ADI01403.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
          Length = 668

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    R+L + +  ++  S    E L SI  I +KIA  +   F +
Sbjct: 515 VGLKTARILAEHYRDIERFSDIDREELMSIPEIGEKIAESVTAFFAE 561


>gi|81427980|ref|YP_394979.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp.
           sakei 23K]
 gi|90135183|sp|Q38YR0|RUVA_LACSS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78609621|emb|CAI54667.1| Holliday junction DNA helicase RuvA [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 203

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     +L      G ++ I       L    G+ KK A +I
Sbjct: 68  KQLFQKLISVSGIGPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQI 123


>gi|320100660|ref|YP_004176252.1| DEAD/DEAH box helicase domain-containing protein [Desulfurococcus
           mucosus DSM 2162]
 gi|319753012|gb|ADV64770.1| DEAD/DEAH box helicase domain protein [Desulfurococcus mucosus DSM
           2162]
          Length = 714

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 563 IGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           IG +R R+L++  F T++ ++ +   ++AS+    +++A ++     +
Sbjct: 661 IGRVRARILIEHGFKTLRDLAEAPVSSIASLPRFGQRVAEEVERQLRE 708


>gi|317121677|ref|YP_004101680.1| PHP domain protein [Thermaerobacter marianensis DSM 12885]
 gi|315591657|gb|ADU50953.1| PHP domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 675

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPET--LASIEGISKKIACKIYNHFHKNTS 612
           L  I G+GP     L    G  +   +  +  +   +A++ G+ +  A K+     +   
Sbjct: 114 LLAIPGLGPRTAARLYHELGIDSPAALRDA-LDDGRVAALPGLGEARARKLREALDRLDR 172

Query: 613 HTP 615
             P
Sbjct: 173 EGP 175


>gi|292670819|ref|ZP_06604245.1| RecD/TraA family helicase [Selenomonas noxia ATCC 43541]
 gi|292647440|gb|EFF65412.1| RecD/TraA family helicase [Selenomonas noxia ATCC 43541]
          Length = 722

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKI 603
           I+G+GP   R +++ FGT    I  S P  L  I GI  K A KI
Sbjct: 101 IDGVGPAMARRIVEHFGTEALRIIESVPHRLREISGIGPKTAEKI 145


>gi|166215832|sp|Q5ZWX6|DNLJ_LEGPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 673

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  K   S L++              I  IG    R+L + +  V+ +  ++ E L ++ 
Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLN 553

Query: 594 GISKKIACKIYNHF 607
            I    A  I + F
Sbjct: 554 DIGPVAASHIVHFF 567


>gi|52841193|ref|YP_094992.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628304|gb|AAU27045.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 683

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  K   S L++              I  IG    R+L + +  V+ +  ++ E L ++ 
Sbjct: 504 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLN 563

Query: 594 GISKKIACKIYNHF 607
            I    A  I + F
Sbjct: 564 DIGPVAASHIVHFF 577


>gi|20094872|ref|NP_614719.1| topoisomerase V [Methanopyrus kandleri AV19]
 gi|14325803|gb|AAK60014.1| topoisomerase V [Methanopyrus kandleri]
 gi|19888102|gb|AAM02649.1| Topoisomerase V [Methanopyrus kandleri AV19]
          Length = 984

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           R K     + ++ G+   +   LL+ F T   +  +    L  + G+   +  +I  
Sbjct: 849 RIKGIPETMLQVRGMSVEKAERLLERFDTWTKVKEAPVSELVRVPGVGLSLVKEIKA 905



 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L ++ G+ P     L++  G+   +  +    L  +E +  K+A +I   
Sbjct: 913 ALLDVKGVSPELADRLVEELGSPYRVLTAKKSDLMRVERVGPKLAERIRAA 963



 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 563 IGPLRKRLLLQSFGTV----KMISRSSPETLASIEGIS-KKIACKI--YNHFHKNTSHTP 615
           +G  R R L++ FG+     K++  +    L  + GI  + +A  +  Y     +   TP
Sbjct: 704 VGEGRARRLIEYFGSAGEVGKLVENAEVSKLLEVPGIGDEAVARLVPGYKTLR-DAGLTP 762



 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPE 587
           RL +EA+R A+            + L +  G+G      LL++FG  + + +       E
Sbjct: 396 RLSEEAYRAAVE--------IQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIE 447

Query: 588 TLASIEGISKKI 599
            LAS+EG+ +++
Sbjct: 448 KLASVEGVGERV 459



 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 557 LDEINGIGPLRKRLLLQSFG-TVKMISRSSPETLA-SIEGISKKIACKI 603
           L  I G+GP     +L++    ++ ++  +PE LA  +EG+ +++A ++
Sbjct: 624 LLNIEGVGPKLAERILEAVDYDLERLASLNPEELAEKVEGLGEELAERV 672



 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            L  I GI   R   LL+ +G    +  +  E L  
Sbjct: 469 SLISIRGIDRERAERLLKKYGGYSKVREAGVEELRE 504


>gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
 gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
          Length = 921

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +G++  I       +A+++ +  KI+  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGSLDNI-------IANVDQLKGKISQNIKDNL 228


>gi|170289009|ref|YP_001739247.1| DNA repair protein RadC [Thermotoga sp. RQ2]
 gi|170176512|gb|ACB09564.1| DNA repair protein RadC [Thermotoga sp. RQ2]
          Length = 215

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL+ F G++  +S +S E +AS+EG+    A  +    
Sbjct: 39  KDLLERFDGSLIKLSNASLEEIASVEGVGMVKAITLKAAL 78


>gi|53804488|ref|YP_113677.1| hypothetical protein MCA1213 [Methylococcus capsulatus str. Bath]
 gi|53758249|gb|AAU92540.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 574

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 547 KRRKKA--AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIAC 601
           K  KK   A + L +I G+GP R + L       TV+ + R+  +  + S+ G  +K   
Sbjct: 84  KLHKKLPPAITELLKIPGLGPKRVKALYHELDIHTVEQLQRAVRDHRIRSLAGFGEKTES 143

Query: 602 KIYNHF 607
           +I    
Sbjct: 144 RIAEAL 149


>gi|313681124|ref|YP_004058863.1| soluble ligand binding domain [Oceanithermus profundus DSM 14977]
 gi|313153839|gb|ADR37690.1| Soluble ligand binding domain [Oceanithermus profundus DSM 14977]
          Length = 171

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++R+S E L ++ GI   +A +I  +
Sbjct: 116 NVNRASAEELEAVPGIGPALARRIVAY 142


>gi|262282968|ref|ZP_06060735.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA]
 gi|262261220|gb|EEY79919.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA]
          Length = 652

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 29/52 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    R+LL+ F  +  ++++  E +ASI+ +   IA  ++++F + 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPSLAQAEQEEIASIDSLGMVIAKSLHSYFAQE 553



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I+G+GP     L        V  I R S E L  +E   +K A K+YN    + S++
Sbjct: 436 NISGLGPAVVEKLFAKDLVRDVAGIYRLSIEDLLQLENFKEKSANKLYNAIQASKSNS 493


>gi|241889713|ref|ZP_04777011.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
 gi|241863335|gb|EER67719.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
          Length = 663

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  S LD+      I  +G    ++L + +  +     ++ E L +++ + +  A  I 
Sbjct: 494 KSKESSLDKVIYALGILNVGKKAGKILAEKYVNLSNFMNATLEELINLDDVGQITAESIL 553

Query: 605 NHF 607
           ++ 
Sbjct: 554 DYL 556


>gi|262198183|ref|YP_003269392.1| DNA polymerase domain-containing protein [Haliangium ochraceum DSM
           14365]
 gi|262081530|gb|ACY17499.1| DNA polymerase domain-containing protein [Haliangium ochraceum DSM
           14365]
          Length = 394

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 17/63 (26%)

Query: 557 LDEINGIGP---------LR--KRLLLQSFGTVKMISRSSPE-TLASIEGISKKIACKIY 604
           L++I GIGP          R  +  LL+           SPE TLA + GI  ++A +I+
Sbjct: 100 LEQIPGIGPGLSAALEEMARTGRLRLLERLEG-----ELSPEATLAQVPGIGDELAHRIH 154

Query: 605 NHF 607
              
Sbjct: 155 EVL 157


>gi|148360390|ref|YP_001251597.1| DNA ligase [Legionella pneumophila str. Corby]
 gi|166215817|sp|A5IFV1|DNLJ_LEGPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148282163|gb|ABQ56251.1| DNA ligase [Legionella pneumophila str. Corby]
          Length = 673

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  K   S L++              I  IG    R+L + +  V+ +  ++ E L ++ 
Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLN 553

Query: 594 GISKKIACKIYNHF 607
            I    A  I + F
Sbjct: 554 DIGPVAASHIVHFF 567


>gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
 gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
          Length = 874

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 10/53 (18%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            + GIG      LL+ FG+V+ +  ++ +    + G       K+      N 
Sbjct: 192 GVPGIGEKTAGKLLREFGSVENLL-ANID---KVSG------KKLQESLRANA 234


>gi|315649754|ref|ZP_07902837.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453]
 gi|315274728|gb|EFU38109.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453]
          Length = 670

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           AI    K +++   S L    I   G    ++L   +  +  +  ++ E L  +  +   
Sbjct: 497 AIE---KSKERDLASFLFALGIPNTGKSTTKMLADHYRDLHRVMAATAEELVELPDVGGI 553

Query: 599 IACKIYNHF 607
           +A  I  +F
Sbjct: 554 VADSIAGYF 562


>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
 gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
          Length = 945

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 25/108 (23%)

Query: 500 GPKRSAGMEKFFVKK-GEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLD 558
            P+   G E    K+  E   +     ++  +  + D A  F                  
Sbjct: 174 RPRHGGGYEILGEKEIKEKYNIPKTSQVIDLLALMGDAADNF-----------------P 216

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
              G+G      L+  FG++  I       L++ + I  K+  KI N 
Sbjct: 217 GCPGVGEKTASKLINEFGSIDNI-------LSNTDKIKGKLKEKIENA 257


>gi|146296740|ref|YP_001180511.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166215569|sp|A4XK85|DNLJ_CALS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145410316|gb|ABP67320.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 673

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 541 AITTHRKRRKKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           AI   +KR       PLD       I  IG    + L +   ++  +   + E L  +  
Sbjct: 493 AIEASKKR-------PLDRLIFALGIRHIGQKAAKTLAEHISSIDDLFTITEEELLKLPD 545

Query: 595 ISKKIACKIYNHFHKNTS 612
             +K+A  +   F ++ +
Sbjct: 546 FGEKMAKSVVTFFRQDQT 563


>gi|308162262|gb|EFO64669.1| Hypothetical protein GLP15_1509 [Giardia lamblia P15]
          Length = 195

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           G+   + R L + F T++ I  SS + +AS+ G S++ A  +    
Sbjct: 145 GLSKPKIRSLCEHFKTLRDICTSSVKEIASLPGFSEETAATLLRRL 190


>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
 gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
          Length = 937

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           D I G   IGP +   LL  FG++  I     + L+    + KK+
Sbjct: 194 DNIPGCKGIGPKKASELLTQFGSIDAIYE-HLDELS--PSLKKKL 235


>gi|34556867|ref|NP_906682.1| Holliday junction DNA helicase RuvA [Wolinella succinogenes DSM
           1740]
 gi|44888365|sp|Q7MA70|RUVA_WOLSU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|34482582|emb|CAE09582.1| PUTATIVE HOLLIDAY JUNCTION DNA HELICASE [Wolinella succinogenes]
          Length = 189

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 525 PILYFIQR-LRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMI 581
                I   +R+EA  +++    +  +K  +  L +ING+GP     +L ++   T   I
Sbjct: 42  EARLLITHLIREEA--WSLYGFAEEAEKRVFDTLIKINGVGPKAALAILSTYTPPTFAQI 99

Query: 582 SRS-SPETLASIEGISKKIACKI 603
            ++   + L  + GI  K A +I
Sbjct: 100 IQAQDVKALQRVPGIGPKSAGRI 122


>gi|321459229|gb|EFX70285.1| hypothetical protein DAPPUDRAFT_61546 [Daphnia pulex]
          Length = 146

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L  I  +       LL +F T++ I  ++ E L+   G   + A +++   H
Sbjct: 89  ALSSIKSVNRTNAMTLLSNFQTLQKIYEATEEDLSLNPGFGPQKAKRLFRVLH 141


>gi|296106543|ref|YP_003618243.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
 gi|295648444|gb|ADG24291.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
          Length = 673

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  K   S L++              I  IG    R+L + +  V+ +  ++ E L ++ 
Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEELMTLN 553

Query: 594 GISKKIACKIYNHF 607
            I    A  I + F
Sbjct: 554 DIGPVAASHIVHFF 567


>gi|226311584|ref|YP_002771478.1| hypothetical protein BBR47_19970 [Brevibacillus brevis NBRC 100599]
 gi|226094532|dbj|BAH42974.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 234

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIEGISKKIACKIYNHF 607
           A    L  + GIG  R + ++    + +     +  + L  IEGI +K+  +I +  
Sbjct: 178 ATADELMSLPGIGEARAKAIVDY-RSKQGPFRSA--DDLKQIEGIGEKMFARIKDRL 231


>gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
          Length = 913

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            + GIG    + L+Q FG+++ +  +  + + S    + +IA  I  
Sbjct: 187 GVKGIGAKSAQKLIQRFGSIESLY-ARIDEVESAT--TPRIAKLIKE 230


>gi|145296663|ref|YP_001139484.1| DNA integrity scanning protein DisA [Corynebacterium glutamicum R]
 gi|166201837|sp|A4QH66|DISA_CORGB RecName: Full=DNA integrity scanning protein disA
 gi|140846583|dbj|BAF55582.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 366

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG +  +  +S E L++++G+    A  I +  
Sbjct: 325 KLIVEFGNLDALLNASVEDLSAVDGVGSLWARHITDGL 362


>gi|38234342|ref|NP_940109.1| hypothetical protein DIP1771 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200605|emb|CAE50301.1| Putative membrane protein [Corynebacterium diphtheriae]
          Length = 209

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 14/64 (21%)

Query: 546 RKRRKKAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKI 599
           R R   A  + L++++GIG      ++        FG++        E L  ++GI    
Sbjct: 148 RVRLNSATVAELEQLDGIGAKTAAAIVSYRDSHGGFGSL--------EELQKVKGIGPAK 199

Query: 600 ACKI 603
              I
Sbjct: 200 YQAI 203


>gi|19553863|ref|NP_601865.1| DNA integrity scanning protein DisA [Corynebacterium glutamicum
           ATCC 13032]
 gi|62391504|ref|YP_226906.1| DNA integrity scanning protein DisA [Corynebacterium glutamicum
           ATCC 13032]
 gi|81759851|sp|Q8NMB2|DISA_CORGL RecName: Full=DNA integrity scanning protein disA
 gi|21325438|dbj|BAC00060.1| Predicted nucleic-acid-binding protein (contains the HHH domain)
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326846|emb|CAF20690.1| Predicted nucleic-acid-binding protein (contains the HHH domain)
           [Corynebacterium glutamicum ATCC 13032]
          Length = 366

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG +  +  +S E L++++G+    A  I +  
Sbjct: 325 KLIVEFGNLDALLNASVEDLSAVDGVGSLWARHITDGL 362


>gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I)
           [Deinococcus deserti VCD115]
          Length = 923

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRS 584
           D I G   IGP     LLQ +GT++ I  +
Sbjct: 187 DNIPGAKGIGPKTAAKLLQEYGTLEGIYEA 216


>gi|251770889|gb|EES51475.1| hypothetical protein UBAL3_96120018 [Leptospirillum
           ferrodiazotrophum]
          Length = 387

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 7   PECPGVYQML----DIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV 62
           P C GVY++         +VLY+G + NL+KR+  +++S+     +   +S     R+ +
Sbjct: 297 PVCSGVYEISSFVPGEPEKVLYIGSSRNLRKRLSHHLYSSGGNPLLRERMSGGARFRYRI 356

Query: 63  TC 64
             
Sbjct: 357 VK 358


>gi|300768015|ref|ZP_07077921.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300494364|gb|EFK29526.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 220

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMI--SRSSPETLASIEGISKKIACKI 603
           KA +  L  ++GIGP     +L      G ++ I    ++   L S  G+ KK A +I
Sbjct: 84  KALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATY--LTSFPGVGKKTAQQI 139


>gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115]
          Length = 926

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRS 584
           D I G   IGP     LLQ +GT++ I  +
Sbjct: 190 DNIPGAKGIGPKTAAKLLQEYGTLEGIYEA 219


>gi|297583057|ref|YP_003698837.1| DNA ligase [Bacillus selenitireducens MLS10]
 gi|297141514|gb|ADH98271.1| DNA ligase, NAD-dependent [Bacillus selenitireducens MLS10]
          Length = 668

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L   F T+  +  +  E L +++ I  K+A  I   F
Sbjct: 516 VGSKAAKTLAMHFETMDALMEADKEALIAVDEIGDKMADSIVMAF 560


>gi|28378879|ref|NP_785771.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1]
 gi|254557084|ref|YP_003063501.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1]
 gi|308181078|ref|YP_003925206.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38258511|sp|Q88V02|RUVA_LACPL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|28271716|emb|CAD64622.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum WCFS1]
 gi|254046011|gb|ACT62804.1| holliday junction DNA helicase RuvA [Lactobacillus plantarum JDM1]
 gi|308046569|gb|ADN99112.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 203

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMI--SRSSPETLASIEGISKKIACKI 603
           KA +  L  ++GIGP     +L      G ++ I    ++   L S  G+ KK A +I
Sbjct: 67  KALFEKLLGVSGIGPKSALAILANNDHAGLIQAINQENATY--LTSFPGVGKKTAQQI 122


>gi|220931528|ref|YP_002508436.1| conserved hypothetical protein TIGR00375 [Halothermothrix orenii H
           168]
 gi|219992838|gb|ACL69441.1| conserved hypothetical protein TIGR00375 [Halothermothrix orenii H
           168]
          Length = 392

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PL ++ G+G      LL+SFGT +++I +S    L+ + G   +IA  I
Sbjct: 323 PLADVPGVGKKTLNKLLKSFGTEMEIIHQSGVNELSELVG--TRIAGNI 369


>gi|269123417|ref|YP_003305994.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis
           DSM 12112]
 gi|268314743|gb|ACZ01117.1| Holliday junction DNA helicase RuvA [Streptobacillus moniliformis
           DSM 12112]
          Length = 200

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISR-SS---PETLASIEGISKKIACKI 603
           INGIG  +   +L +F   + ++  +S    + LA + GI  K A KI
Sbjct: 78  INGIGAKKAIAILSNFE-FEELAAIASSKNFKELAKVPGIGMKKAEKI 124


>gi|48374262|gb|AAT41954.1| putative DNA ligase [Fremyella diplosiphon Fd33]
          Length = 268

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G +  +LL + F  V+ I+++    +A I GI  +IA  ++  F  + + T
Sbjct: 112 GIRHVGSVNAQLLTEKFSDVEKITQARQSDIAGIYGIGVEIAESVHQWFQIHANQT 167


>gi|307297547|ref|ZP_07577353.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916807|gb|EFN47189.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 256

 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 10/54 (18%)

Query: 556 PLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYN 605
            L +I GIG  + + +++ F    G+ +     + + L  + GI   I  +I  
Sbjct: 132 SLQDIPGIGEAKAKAIVE-FREKNGSFR-----TSDDLLKVPGIGPSILSEILA 179



 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 14/50 (28%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKI 599
            L+ + GIGP + R ++        FG+V        E +  + GI +K 
Sbjct: 58  ELELLPGIGPAKARAIIDYRTSVGQFGSV--------EDILQVRGIGEKT 99



 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 541 AITTHRKRRKKAAYSP-LDEINGIGPLRKRLLL----------QSFGTVK-MISRSSPET 588
           AI   R++      S  L ++ GIGP     +L          +  G++K  ++ +  E 
Sbjct: 146 AIVEFREKNGSFRTSDDLLKVPGIGPSILSEILASIVPLVGSEKQSGSLKVNVNTADEEV 205

Query: 589 LASIEGISKKIACKIYNH 606
           L  + G+   IA +I   
Sbjct: 206 LCGLPGVGPVIAKRIVEF 223


>gi|167044562|gb|ABZ09235.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote
           HF4000_APKG7F11]
          Length = 126

 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETL 589
           QR+     R+ I        K     L +I GIG +R R L ++   T + ++ +S   L
Sbjct: 59  QRI-----RYGI--------KEELIDLVKIKGIGRVRARRLYKNNIKTRQDLATTSVNQL 105

Query: 590 ASIEGISKKIACKIYNHFH 608
           A+I+ I   +A  I +   
Sbjct: 106 AAIDKIGMAVANSIKSQLR 124


>gi|297571562|ref|YP_003697336.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931909|gb|ADH92717.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 284

 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 14/61 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+ + L  + GIGP     ++Q       F        ++ + L  I GI +K   +I +
Sbjct: 227 ASATELQTVPGIGPATAAAIVQWREKNGKF--------AAVDDLTRISGIGEKTIERIRD 278

Query: 606 H 606
           H
Sbjct: 279 H 279


>gi|326318908|ref|YP_004236580.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375744|gb|ADX48013.1| Holliday junction DNA helicase RuvA [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 190

 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACK 602
            L +I+G+GP     +L   G V  ++++ S +    L  + GI KK A +
Sbjct: 74  ELIKISGVGPRTALSILSGMG-VDDLAQAVSLQEAGRLVKVPGIGKKTAER 123


>gi|120612876|ref|YP_972554.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1]
 gi|166229622|sp|A1TUZ2|RUVA_ACIAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120591340|gb|ABM34780.1| Holliday junction DNA helicase RuvA [Acidovorax citrulli AAC00-1]
          Length = 190

 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACK 602
            L +I+G+GP     +L   G V  ++++ S +    L  + GI KK A +
Sbjct: 74  ELIKISGVGPRTALSILSGMG-VDDLAQAVSLQEAGRLVKVPGIGKKTAER 123


>gi|76803074|ref|YP_331169.1| 50S ribosomal protein L32e [Natronomonas pharaonis DSM 2160]
 gi|76558939|emb|CAI50535.1| ribosomal protein L32.eR [Natronomonas pharaonis DSM 2160]
          Length = 240

 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
            L +I+G+G  +   L +  G  TV  +   S + LA I+G+   +A +I  
Sbjct: 11  ELTDISGVGEAKAETL-REAGIETVDDLREKSQDELADIDGVGNALAARIKA 61


>gi|312144161|ref|YP_003995607.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
 gi|311904812|gb|ADQ15253.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
          Length = 670

 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           G+G  R   L  ++ ++  +  +S E L  I+ I   IA  I + F +  +
Sbjct: 519 GLGAAR--TLSDNYSSISQLMEASNEELEEIDEIGPVIADSIIDFFAEKQN 567


>gi|325109981|ref|YP_004271049.1| DNA protecting protein DprA [Planctomyces brasiliensis DSM 5305]
 gi|324970249|gb|ADY61027.1| DNA protecting protein DprA [Planctomyces brasiliensis DSM 5305]
          Length = 389

 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            L+ + G+GP  + +LL++FG+      +  E    I G+  KI  ++    H++
Sbjct: 14  ALNLVRGVGPRLQTVLLETFGSATAALNAPVEQWRQIPGVGVKIIRELQERNHRD 68


>gi|15644305|ref|NP_229357.1| DNA repair protein RadC [Thermotoga maritima MSB8]
 gi|6685843|sp|Q9X1P3|Y1557_THEMA RecName: Full=UPF0758 protein TM_1557
 gi|4982124|gb|AAD36623.1|AE001801_10 DNA repair protein [Thermotoga maritima MSB8]
          Length = 222

 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL+ F G++  +S +S E +AS+EG+    A  +    
Sbjct: 46  KDLLERFDGSLIKLSNASLEEIASVEGVGMVKAITLKAAL 85


>gi|315646359|ref|ZP_07899477.1| YqxK [Paenibacillus vortex V453]
 gi|315278002|gb|EFU41322.1| YqxK [Paenibacillus vortex V453]
          Length = 404

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603
           PL+ I G+G      LLQ+FGT   I  +++   LA++ G   ++A  I
Sbjct: 335 PLEFIPGLGKSAMSKLLQAFGTEMNILHQATEAELAAVAG--DQLAASI 381


>gi|291569184|dbj|BAI91456.1| DNA ligase [Arthrospira platensis NIES-39]
          Length = 683

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    +LL Q+F + + ++ +S   +  + GI  +IA  +Y  F    +
Sbjct: 523 GIRHVGKANAQLLAQNFPSCQSLAAASSAQIEGVYGIGAEIATSVYQWFQNPAN 576


>gi|259502857|ref|ZP_05745759.1| crossover junction endoribonuclease subunit A [Lactobacillus antri
           DSM 16041]
 gi|259169224|gb|EEW53719.1| crossover junction endoribonuclease subunit A [Lactobacillus antri
           DSM 16041]
          Length = 197

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     +L      G V  I+ ++   L    GI KK A +I
Sbjct: 68  KQLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNISYLTKFPGIGKKTASQI 123


>gi|256823892|ref|YP_003147853.1| hypothetical protein Cyan8802_4638 [Cyanothece sp. PCC 8802]
 gi|256592566|gb|ACV03404.1| hypothetical protein Cyan8802_4638 [Cyanothece sp. PCC 8802]
          Length = 251

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 5  QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY 38
          ++P  PG+Y +  +  ++LY+GKA NL+ R  S+
Sbjct: 55 KLPPQPGLYFVYTLDHQLLYLGKADNLRTRWNSH 88


>gi|184201319|ref|YP_001855526.1| NAD-dependent DNA ligase [Kocuria rhizophila DC2201]
 gi|254781351|sp|B2GL64|DNLJ_KOCRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183581549|dbj|BAG30020.1| NAD(+)-dependent DNA ligase [Kocuria rhizophila DC2201]
          Length = 766

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +GP   R L  S  ++  I ++ PETLA  +G+   IA  +   F +
Sbjct: 595 SIRHVGPTAARSLATSLRSMDAIRQADPETLAGTDGVGPVIAQAVQEFFAE 645


>gi|328953996|ref|YP_004371330.1| helicase, RecD/TraA family [Desulfobacca acetoxidans DSM 11109]
 gi|328454320|gb|AEB10149.1| helicase, RecD/TraA family [Desulfobacca acetoxidans DSM 11109]
          Length = 720

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKI 603
           KK   S    I GIGP+  + ++Q FG     I  +  E LA +EGI  K    I
Sbjct: 83  KKYLSSGF--IKGIGPVMAQRIVQKFGGQTFDIIETGIERLAEVEGIGPKRRQMI 135


>gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
 gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
          Length = 878

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            + G+G      LL+ FGT++ I   + + L 
Sbjct: 194 GVPGVGEKTAIKLLKQFGTLEKIYE-NMDELK 224


>gi|150020120|ref|YP_001305474.1| DNA repair protein RadC [Thermosipho melanesiensis BI429]
 gi|149792641|gb|ABR30089.1| DNA repair protein RadC [Thermosipho melanesiensis BI429]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           + +L  F  ++  +S++S E L  I+G+ K  A  I   
Sbjct: 39  KKILNYFDNSLLKLSKASIEDLCKIKGLGKAKATTILAA 77


>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
 gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
          Length = 888

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 21/70 (30%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG--------------ISKKIACKIY 604
            + GIG      L+Q FG++  +     E  A + G              +S+ +A  I 
Sbjct: 188 GVPGIGEKTAIKLVQQFGSMDNL----LERAAEVPGKVGEKLREFSEQARLSRTLATIIK 243

Query: 605 N---HFHKNT 611
           +     H + 
Sbjct: 244 DVPYELHPDQ 253


>gi|82703340|ref|YP_412906.1| competence protein ComEA helix-hairpin-helix region [Nitrosospira
           multiformis ATCC 25196]
 gi|82411405|gb|ABB75514.1| Competence protein ComEA helix-hairpin-helix region [Nitrosospira
           multiformis ATCC 25196]
          Length = 100

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 556 PLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + ++   +  G+ K     S + L ++ GI      K+  
Sbjct: 33  ELESLQGIGPAKAKAIIDYRKKKGSFK-----SVDDLQNVSGIGPATVQKLRK 80


>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
 gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
          Length = 950

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IGP     LL+ +G+++ I  ++ + L
Sbjct: 221 DNIPGAKGIGPKTASSLLKKYGSLEGIY-ANIDAL 254


>gi|254480787|ref|ZP_05094034.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
 gi|214039370|gb|EEB80030.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
          Length = 677

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L + FG+   +  +S E+L  ++ +   +A  +   F
Sbjct: 523 VGEATALNLARHFGSWPELVAASEESLLDVDDVGPVVADHLRQFF 567


>gi|166032164|ref|ZP_02234993.1| hypothetical protein DORFOR_01867 [Dorea formicigenerans ATCC
           27755]
 gi|166027887|gb|EDR46644.1| hypothetical protein DORFOR_01867 [Dorea formicigenerans ATCC
           27755]
          Length = 745

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           I GIGP     + + FG  T++ I  ++P+ L  I GIS+K    I   + KN 
Sbjct: 101 IKGIGPKMADTIFRKFGLQTLE-IMENNPQELLKIRGISEKKLAAIVESYGKNQ 153


>gi|148747765|ref|YP_001285844.1| hypothetical protein GBVE2_gp038 [Geobacillus virus E2]
 gi|113715707|gb|ABI36856.1| hypothetical protein [Geobacillus virus E2]
          Length = 266

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
             +++ +  GVY + D   +++Y+GK+  +L  RI S       + +            +
Sbjct: 151 KQKEIEKKHGVYFLYDHDKQLIYIGKSVHDLWGRIIS-------SAKER----NAVYYSY 199

Query: 61  TVTCTEVEALLLEANMIKRLKPRFN 85
            +T T+ +  + E   I + KP+ N
Sbjct: 200 ALTKTKSDTSVYEMYYISKYKPKLN 224


>gi|126668324|ref|ZP_01739283.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
 gi|126627241|gb|EAZ97879.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
          Length = 703

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 21/45 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L   FG+++ I+ +    L ++  +   +A  + + F
Sbjct: 550 VGEATAKGLAGYFGSLEAIAEADESALQAVSDVGPIVAGHLRSFF 594


>gi|77458028|ref|YP_347533.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf0-1]
 gi|123731132|sp|Q3KFB2|DNLJ_PSEPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|77382031|gb|ABA73544.1| DNA ligase [Pseudomonas fluorescens Pf0-1]
          Length = 785

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S G+++ + ++ P+ L  +  I  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLGSLERVQQALPQVLTYLPDIGLEVAHEIHSFF 583


>gi|317062114|ref|ZP_07926599.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
 gi|313687790|gb|EFS24625.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 665

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K+R  +       I  IG    +LL ++   +  + +   E L  I+GI  K A  +Y+ 
Sbjct: 493 KKRDYSKVIYALGIPFIGKYSGKLLAEASRNIDNLMKMEIEELIEIDGIGDKGAKAVYDF 552

Query: 607 FHKNTS 612
                +
Sbjct: 553 LRDEEN 558


>gi|225027213|ref|ZP_03716405.1| hypothetical protein EUBHAL_01469 [Eubacterium hallii DSM 3353]
 gi|224955442|gb|EEG36651.1| hypothetical protein EUBHAL_01469 [Eubacterium hallii DSM 3353]
          Length = 373

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 20/76 (26%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASI-------------------EGISKKI 599
            I GIG   ++ LL+ FG    I  +    +  I                     I K  
Sbjct: 13  NIAGIGVKTQKKLLEHFGHPSTIYNAPESEIKGILTTGQCKEVIASKNQKKIEASIRKLE 72

Query: 600 ACKIYNHFHKNTSHTP 615
             +IY  FH+ +   P
Sbjct: 73  KREIY-FFHRESQEYP 87


>gi|70726326|ref|YP_253240.1| hypothetical protein SH1325 [Staphylococcus haemolyticus JCSC1435]
 gi|68447050|dbj|BAE04634.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 234

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 14/58 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +I G+GP + R ++        F ++        E L +I+GI  K   +I  + 
Sbjct: 183 ELLKIPGVGPAKVREIIDYRQKNNTFHSI--------EDLKNIKGIGDKTFERIKEYI 232


>gi|302390929|ref|YP_003826749.1| DNA integrity scanning, DisA, linker region [Acetohalobium
           arabaticum DSM 5501]
 gi|302203006|gb|ADL11684.1| DNA integrity scanning, DisA, linker region [Acetohalobium
           arabaticum DSM 5501]
          Length = 373

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+ +F   + I  +S + L  ++G+ +  A  I     +
Sbjct: 320 IENLVDNFSDFQAILNASIDELDDVDGVGEVRAQAIKEGLKR 361


>gi|257065343|ref|YP_003145015.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476]
 gi|256792996|gb|ACV23666.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476]
          Length = 708

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G      +  ++ +++ +  ++ E LA ++GI   IA  I        +
Sbjct: 544 GIRHVGKTTGEAIAAAYPSMEKLMNATEEGLAQVDGIGAVIAKSIVTFLATEDN 597


>gi|217979603|ref|YP_002363750.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
 gi|254781370|sp|B8ETN6|DNLJ_METSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|217504979|gb|ACK52388.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
          Length = 700

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 12/66 (18%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSS---------PETLASIEGISKKIACKIYNHF-- 607
            I  +G    R L + FG+   +  +             + +IEG+ + +A  + + F  
Sbjct: 539 GIRHVGETNARRLARHFGSFSALRETGRAAAPGSEARAEINNIEGVGEVVAEAVADFFAE 598

Query: 608 -HKNTS 612
            H   +
Sbjct: 599 PHNEEA 604


>gi|121535563|ref|ZP_01667371.1| helicase, RecD/TraA family [Thermosinus carboxydivorans Nor1]
 gi|121305891|gb|EAX46825.1| helicase, RecD/TraA family [Thermosinus carboxydivorans Nor1]
          Length = 719

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + G+GP     L++ FG  T+++I    P  L  +EGI  K A  I+N +
Sbjct: 90  VKGVGPAMAARLVKHFGERTLEIIEH-YPHRLVEVEGIGTKKAEMIHNSY 138


>gi|89096034|ref|ZP_01168927.1| hypothetical protein B14911_25095 [Bacillus sp. NRRL B-14911]
 gi|89088888|gb|EAR67996.1| hypothetical protein B14911_25095 [Bacillus sp. NRRL B-14911]
          Length = 124

 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 14  QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLE 73
             LD    +++VGKA  L++R+K +        +       +  I        +E  + E
Sbjct: 48  LFLDSNEDLMFVGKARKLRQRVKKHFEDTVSPIKDVR--HDVYKIALIYVEDPMEREIYE 105

Query: 74  ANMIKRLKPRFN 85
             +I  L+ ++N
Sbjct: 106 TYIINTLQAKYN 117


>gi|218533192|ref|YP_002424008.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4]
 gi|218525495|gb|ACK86080.1| helicase, RecD/TraA family [Methylobacterium chloromethanicum CM4]
          Length = 750

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 562 GIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603
           GIGP   + ++  FG +   I  + P+ L  + GI  K A +I
Sbjct: 111 GIGPAMAKRIVALFGESTFEIIEAEPDRLMEVGGIGPKRAERI 153


>gi|154250371|ref|YP_001411196.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Fervidobacterium nodosum Rt17-B1]
 gi|154154307|gb|ABS61539.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Fervidobacterium nodosum Rt17-B1]
          Length = 227

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L ++ GIGP + + ++        F ++        E + +++GI +K   K+  
Sbjct: 175 ELQKLPGIGPSKAQAIIDYREKVGKFKSI--------EEIKNVKGIGEKTYEKLKE 222



 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ ++ E L  + GI    A  I ++
Sbjct: 167 NINTANLEELQKLPGIGPSKAQAIIDY 193


>gi|15829191|ref|NP_326551.1| DNA polymerase I (POL I) [Mycoplasma pulmonis UAB CTIP]
 gi|17366622|sp|Q98PK2|EX53_MYCPU RecName: Full=5'-3' exonuclease
 gi|14090135|emb|CAC13893.1| DNA POLYMERASE I (POL I) [Mycoplasma pulmonis]
          Length = 297

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L  I GIG    + LL +F +++ I     ++L S   ISK    KI +
Sbjct: 189 LKGIAGIGEKGAKNLLNNFKSLEKI----FDSLESTNLISKAQKQKIRD 233


>gi|313125027|ref|YP_004035291.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
 gi|312291392|gb|ADQ65852.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
          Length = 694

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 553 AYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
             S L    I  +G    R L ++FG++  +  +S E L  +E +   +A KI   F   
Sbjct: 527 LSSFLVGLGIPEVGGSTARNLARAFGSLDAVMDASVEELEEVEDVGPTVAEKIREFFDTE 586

Query: 611 TS 612
           ++
Sbjct: 587 SN 588


>gi|259047457|ref|ZP_05737858.1| competence protein ComEA [Granulicatella adiacens ATCC 49175]
 gi|259035648|gb|EEW36903.1| competence protein ComEA [Granulicatella adiacens ATCC 49175]
          Length = 214

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 12/57 (21%)

Query: 556 PLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  + GIG  +   +++     G+ K       E L  + GI KK+    Y  F +
Sbjct: 162 ELKTLKGIGEKKAEAIIEYRKQNGSFKN-----KEELMKVRGIGKKL----YESFQE 209



 Score = 40.5 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ ++ E L +++GI +K A  I  +  +N S
Sbjct: 154 NINTATVEELKTLKGIGEKKAEAIIEYRKQNGS 186


>gi|222476129|ref|YP_002564650.1| helix-hairpin-helix motif protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454500|gb|ACM58764.1| helix-hairpin-helix motif protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 485

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L  ++G+G      L ++ + T   ++ ++ + L  ++GI +  A  I    H
Sbjct: 205 LQSLSGVGKGTAPKLARNGYETRDDVAAATEQELREVQGIGESKAQSIRQSAH 257


>gi|229821759|ref|YP_002883285.1| protein of unknown function DUF147 [Beutenbergia cavernae DSM
           12333]
 gi|259645239|sp|C5C1B3|DISA_BEUC1 RecName: Full=DNA integrity scanning protein disA
 gi|229567672|gb|ACQ81523.1| protein of unknown function DUF147 [Beutenbergia cavernae DSM
           12333]
          Length = 359

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             FGT++ +  +S E L  ++G+    A  +    
Sbjct: 312 DHFGTLQKMLSASVEDLQLVDGVGALRARSVREGL 346


>gi|292654282|ref|YP_003534179.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
 gi|2500108|sp|Q48328|RADA_HALVO RecName: Full=DNA repair and recombination protein radA
 gi|1378032|gb|AAC44121.1| RadA [Haloferax volcanii]
 gi|291370076|gb|ADE02303.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L+ + G+GP     L++S + + + I+ +SP  L++   I    A  I N 
Sbjct: 6   LESLPGVGPATADKLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINA 56


>gi|291335083|gb|ADD94712.1| NAD dependent DNA ligase [uncultured phage MedDCM-OCT-S09-C23]
          Length = 717

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 546 RKRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASI---EGISKKIAC 601
           R++R          I GI     R L Q  F ++  I ++S E LA      G++  I  
Sbjct: 485 RQKRG-------MNIKGIAKKTLRQLFQEGFDSITSILQASEEDLAEALGKPGVAANIKK 537

Query: 602 KIYNHF 607
            I   F
Sbjct: 538 AIDERF 543


>gi|260584663|ref|ZP_05852409.1| competence protein ComEA [Granulicatella elegans ATCC 700633]
 gi|260157686|gb|EEW92756.1| competence protein ComEA [Granulicatella elegans ATCC 700633]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           A    L  I GIG  +   +LQ           + E L  ++GI KK    I
Sbjct: 145 ATLEELQTIKGIGKKKAEAILQYRKEHGAFR--TKEDLLQVKGIGKKALEAI 194



 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           GT+  I+ ++ E L +I+GI KK A  I  +
Sbjct: 138 GTI-NINTATLEELQTIKGIGKKKAEAILQY 167


>gi|91201914|emb|CAJ74974.1| similar to exodeoxyribonuclease V alpha subunit [Candidatus
           Kuenenia stuttgartiensis]
          Length = 735

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIY 604
           K   S L  I GIG +  + ++  FG  ++ +I   S E L  +EGI +K    I 
Sbjct: 86  KYLGSGL--IKGIGTVMAKRIVSRFGVASLDIIEH-SIEQLKQVEGIGEKRIAMIK 138


>gi|71906106|ref|YP_283693.1| competence protein ComEA helix-hairpin-helix region [Dechloromonas
           aromatica RCB]
 gi|71845727|gb|AAZ45223.1| Competence protein ComEA helix-hairpin-helix region [Dechloromonas
           aromatica RCB]
          Length = 265

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 14/50 (28%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKI 599
            LD + GIGP + + ++        F +V        + L ++ GI    
Sbjct: 54  QLDGLKGIGPTKAKAIVDYRKKNGPFKSV--------DELQNVPGIGPAT 95


>gi|89095737|ref|ZP_01168631.1| hypothetical protein B14911_03369 [Bacillus sp. NRRL B-14911]
 gi|89089483|gb|EAR68590.1| hypothetical protein B14911_03369 [Bacillus sp. NRRL B-14911]
          Length = 235

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEA 74
           M +     LY+G+  +++ R+ S+    N+T R   +  +I    +     ++E  LLE 
Sbjct: 44  MFNKQRSCLYIGEG-DIRTRLNSH----NNTGRFGKLAREIV---YYRVEDQLERKLLER 95

Query: 75  NMIKRLKPRFN 85
            +I   KP FN
Sbjct: 96  ILIYHYKPLFN 106


>gi|332711096|ref|ZP_08431030.1| DNA protecting protein DprA [Lyngbya majuscula 3L]
 gi|332350078|gb|EGJ29684.1| DNA protecting protein DprA [Lyngbya majuscula 3L]
          Length = 377

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           E+ GIG +  + L Q FGT+    ++S   L ++EG   ++  ++
Sbjct: 15  EVPGIGSVLLQRLHQQFGTLAEAWKASASELGAVEGFGVRLIERV 59


>gi|218710253|ref|YP_002417874.1| NAD-dependent DNA ligase LigA [Vibrio splendidus LGP32]
 gi|254782307|sp|B7VIK3|DNLJ_VIBSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|218323272|emb|CAV19449.1| DNA ligase [Vibrio splendidus LGP32]
          Length = 670

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F T++++  ++ E L  +  I   +A  + + F +  +  
Sbjct: 521 VGEATAMNLAQHFKTLELVQAATHEQLVEVSDIGDIVASHLTSFFSQEKNRA 572


>gi|212697125|ref|ZP_03305253.1| hypothetical protein ANHYDRO_01691 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675900|gb|EEB35507.1| hypothetical protein ANHYDRO_01691 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 510

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 550 KKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           KKA  S L    I  IG    +L+ + F   ++ ++   S E L +I GI KK   KI  
Sbjct: 75  KKAIISYLASGNIESIGKKTAQLIYEKFKDDSIDVVFNQS-EKLLTIPGIGKKKLEKIKE 133


>gi|158340726|ref|YP_001521894.1| hypothetical protein AM1_D0085 [Acaryochloris marina MBIC11017]
 gi|158310967|gb|ABW32580.1| hypothetical protein AM1_D0085 [Acaryochloris marina MBIC11017]
          Length = 99

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 1  MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKR 34
          ++ + +PE  G+Y ++     ++YVG+  NL+ R
Sbjct: 10 INLDPLPEICGIYFVVTAEDEIIYVGQTTNLKNR 43


>gi|195952416|ref|YP_002120706.1| 5'-3' exonuclease [Hydrogenobaculum sp. Y04AAS1]
 gi|195932028|gb|ACG56728.1| 5'-3' exonuclease [Hydrogenobaculum sp. Y04AAS1]
          Length = 299

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 11/43 (25%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMI-----------SRSSPETLA 590
            I G+GP +   LL+ +G+++ I             +S E L 
Sbjct: 188 GIKGVGPKKAVELLEKYGSIENILNNWDEIQKTFKEASKEDLE 230


>gi|84489168|ref|YP_447400.1| hypothetical protein Msp_0354 [Methanosphaera stadtmanae DSM 3091]
 gi|84372487|gb|ABC56757.1| MutS [Methanosphaera stadtmanae DSM 3091]
          Length = 644

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVK----MISRSSPETLASIEGISKKIACKIYNHFH 608
            +++I G+G      ++QS+G+       +     + L +I+G+S+K A +I    H
Sbjct: 6   EIEQIKGVGSKLIDKIIQSYGSYDVFVNSVLEYDIDKLMNIQGLSQKKALEIIRFIH 62


>gi|86148411|ref|ZP_01066703.1| DNA ligase [Vibrio sp. MED222]
 gi|85833825|gb|EAQ51991.1| DNA ligase [Vibrio sp. MED222]
          Length = 670

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F T++++  ++ E L  +  I   +A  + + F +  +  
Sbjct: 521 VGEATAMNLAQHFKTLELVQAATHEQLVEVSDIGDIVASHLTSFFSQEKNRA 572


>gi|84393803|ref|ZP_00992550.1| DNA ligase [Vibrio splendidus 12B01]
 gi|84375600|gb|EAP92500.1| DNA ligase [Vibrio splendidus 12B01]
          Length = 670

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G      L Q F T++++  ++ E L  +  I   +A  + + F +  +  
Sbjct: 521 VGEATAMNLAQHFKTLELVQAATHEQLVEVSDIGDIVASHLTSFFSQEKNRA 572


>gi|253577150|ref|ZP_04854470.1| DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843394|gb|EES71422.1| DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 359

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L++ FG +  +  +S E L  ++GI +  A  I     +
Sbjct: 309 NLVERFGRLPNVMMASIEELDEVDGIGEVRARSIKEGLKR 348


>gi|237743296|ref|ZP_04573777.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1]
 gi|229433075|gb|EEO43287.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1]
          Length = 696

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  IG +  ++L ++   +  +   + E L SI+GI +  A +I   F K  + 
Sbjct: 537 GIAEIGKVTSKILAKASKNIDKLMTMTFEELTSIDGIGEIAANEIIAFFAKEKNQ 591


>gi|149184723|ref|ZP_01863041.1| DNA ligase [Erythrobacter sp. SD-21]
 gi|148832043|gb|EDL50476.1| DNA ligase [Erythrobacter sp. SD-21]
          Length = 690

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR------SSPET----LASIEGISKKIACKIYNHFH 608
            I  +G +  R L++ F  +  +        +  E     L SI+GI   +   + + FH
Sbjct: 527 GIRHVGAVTARDLMKHFHELPALREAAEAAHAGDEEAAASLTSIDGIGGAVVEALGDFFH 586

Query: 609 KNTSHT 614
           ++ +  
Sbjct: 587 EDHNKA 592


>gi|114776898|ref|ZP_01451941.1| DNA processing protein DprA [Mariprofundus ferrooxydans PV-1]
 gi|114552984|gb|EAU55415.1| DNA processing protein DprA [Mariprofundus ferrooxydans PV-1]
          Length = 369

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 28/44 (63%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
            L  ++GIGP+  R LL + G ++ +  ++ + L +++G+ +++
Sbjct: 11  RLSMVHGIGPMLGRRLLAAIGGIEALWSATGDELRAVDGMGQQL 54


>gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E]
 gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I
 gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii]
 gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii]
 gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii]
 gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii]
 gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22]
          Length = 867

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++SI+
Sbjct: 186 DNIPGVPSIGPKTASSLITKFGSVENIFN-SLDQISSIK 223


>gi|81299514|ref|YP_399722.1| DNA processing protein DprA, putative [Synechococcus elongatus PCC
           7942]
 gi|81168395|gb|ABB56735.1| DNA processing protein DprA, putative [Synechococcus elongatus PCC
           7942]
          Length = 402

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L  +  +GP   R LL  FG  +    +    L  ++GI   +A  I
Sbjct: 33  ALSHVPRLGPALLRRLLMHFGCFEAAWEAPTTALLEVDGIGLLLAEAI 80


>gi|78357136|ref|YP_388585.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123768784|sp|Q30ZK6|DNLJ_DESDG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78219541|gb|ABB38890.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 705

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    R L   FG +  + R+  ETL S+  I  ++A  I   F
Sbjct: 530 GIRHVGEQTARTLAARFGNMDELMRADQETLQSLRDIGGEVAGSIRAFF 578


>gi|77919931|ref|YP_357746.1| Holliday junction DNA helicase RuvA [Pelobacter carbinolicus DSM
           2380]
 gi|90135490|sp|Q3A231|RUVA_PELCD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77546014|gb|ABA89576.1| Holliday junction DNA helicase subunit RuvA [Pelobacter
           carbinolicus DSM 2380]
          Length = 197

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTV---KMISRSSPETLASIEGISKKIACKIYNHF 607
           K  +  L  ++G+GP     +L         + +S+ + + LA++ GI KK A ++    
Sbjct: 68  KDLFGLLLSVSGVGPKVALNILSHLPAADLQQALSQGNAKHLATVPGIGKKTAERLVLEL 127

Query: 608 HK 609
            +
Sbjct: 128 RE 129


>gi|56750836|ref|YP_171537.1| DNA processing protein [Synechococcus elongatus PCC 6301]
 gi|56685795|dbj|BAD79017.1| DNA processing protein [Synechococcus elongatus PCC 6301]
          Length = 406

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L  +  +GP   R LL  FG  +    +    L  ++GI   +A  I
Sbjct: 37  ALSHVPRLGPALLRRLLMHFGCFEAAWEAPTTALLEVDGIGLLLAEAI 84


>gi|320095501|ref|ZP_08027169.1| DNA integrity scanning protein [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977563|gb|EFW09238.1| DNA integrity scanning protein [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 356

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNH-FHKN 610
           T+  +  +S E L  +EG+    A  I+ +  H++
Sbjct: 312 TLSQLRSASVEELQKVEGVGPYRAKIIHENLLHQS 346


>gi|116872913|ref|YP_849694.1| ComEA family DNA-binding competence protein [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741791|emb|CAK20915.1| DNA-binding competence protein 1, ComEA family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A  + L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 145 ATKADLQQVPGIGDSKATAIIEY-REKEGLYQ-TIEDLKNVSGIGEKTVEKLKEYL 198


>gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
 gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
 gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
          Length = 897

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IG    + LL  +G+++ +  +  + L+
Sbjct: 187 DNIPGVEGIGEKTAQRLLAEYGSLEGVY-AHLDELS 221


>gi|327541957|gb|EGF28460.1| NAD-dependent DNA ligase LigA [Rhodopirellula baltica WH47]
          Length = 754

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            +   S    I  IGP   +L+   F  + ++  +  E LA+I  I  +IA  +    H 
Sbjct: 587 ARVLSSI--SIRHIGPRVAKLITAKFWNLDLLRSAKAEDLAAIHEIGDRIAESLVKFIHS 644

Query: 610 NTSHT 614
            +   
Sbjct: 645 ESGSQ 649


>gi|327399848|ref|YP_004340717.1| helix-turn-helix domain-containing protein [Hippea maritima DSM
           10411]
 gi|327182477|gb|AEA34658.1| helix-hairpin-helix motif protein [Hippea maritima DSM 10411]
          Length = 105

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH-K 609
           KA    L ++ GIG  +   +++     + I   + + L  ++GI KK    I   F  K
Sbjct: 38  KATVEELLKVKGIGKSKAEAIVKFVK-KERIK--TMDELLKVKGIGKKTLKNIEEMFEVK 94

Query: 610 NTSHTPT 616
             S  P+
Sbjct: 95  TESSKPS 101



 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I++++ E L  ++GI K  A  I     K 
Sbjct: 36  INKATVEELLKVKGIGKSKAEAIVKFVKKE 65


>gi|296269731|ref|YP_003652363.1| helicase, RecD/TraA family [Thermobispora bispora DSM 43833]
 gi|296092518|gb|ADG88470.1| helicase, RecD/TraA family [Thermobispora bispora DSM 43833]
          Length = 746

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606
           ++   S L  I GIGP     ++  FG  T+++I    PE L  + G+  K    I + 
Sbjct: 97  QRYLGSGL--IKGIGPKMAERIVNHFGTDTLRVIEE-EPERLTEVPGLGPKRMKMIADA 152


>gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium linens BL2]
          Length = 578

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 10/55 (18%)

Query: 561 NGIGPLRKRLLLQSFGTVKMI---SRSSPETLASIEGISKKIACKIY---NHFHK 609
            GIG      LL +FG+++ I   +++         G+S K A  +       HK
Sbjct: 198 PGIGEKTAATLLANFGSLESIIKAAKAGV----KTGGLSPKRAATLIEEEETLHK 248


>gi|32476578|ref|NP_869572.1| DNA ligase [Rhodopirellula baltica SH 1]
 gi|81659473|sp|Q7UKD1|DNLJ_RHOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|32447124|emb|CAD76950.1| DNA ligase [Rhodopirellula baltica SH 1]
          Length = 706

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            +   S    I  IGP   +L+   F  + ++  +  E LA+I  I  +IA  +    H 
Sbjct: 539 ARVLSSI--SIRHIGPRVAKLITAKFWNLDLLRSAKAEDLAAIHEIGDRIAESLVKFIHS 596

Query: 610 NTSHT 614
            +   
Sbjct: 597 ESGSQ 601


>gi|325847844|ref|ZP_08170066.1| helicase, RecD/TraA family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480862|gb|EGC83915.1| helicase, RecD/TraA family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 544

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 550 KKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           KKA  S L    I  IG    +L+ + F   ++ ++   S E L +I GI KK   KI  
Sbjct: 75  KKAIISYLASGNIESIGKKTAQLIYEKFKDDSIDVVFNQS-EKLLTIPGIGKKKLEKIKE 133


>gi|300311698|ref|YP_003775790.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
 gi|300074483|gb|ADJ63882.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYNHF 607
           ++ L  I G+GP R + L  + G  ++K +  ++    +  I G   K    I +  
Sbjct: 92  FNDLLAIPGLGPKRVQRLNHALGISSIKQLREAAIAGKVRDIPGFGPKTEQSILSAI 148


>gi|157812533|gb|ABV80323.1| UvrABC system protein C [Gluconacetobacter diazotrophicus PAl 5]
          Length = 80

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 34/77 (44%)

Query: 241 RMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCP 300
             D  ++      +CIQ  F   G+N G   FF     +     I+  FL QFY DKP P
Sbjct: 1   DADIVAIAQAAGHSCIQVFFIRGGRNNGNRAFFPAHARDEAAPDIVGAFLAQFYDDKPPP 60

Query: 301 ENILLSEEAEETSLLEI 317
             ILL+ E  E  L+  
Sbjct: 61  AQILLNCEIAEHDLMAD 77


>gi|307266907|ref|ZP_07548426.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918064|gb|EFN48319.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 204

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIGP+    +++ F    G+ K I     E + ++  I  K+  +I +
Sbjct: 148 ATKEELQTLPGIGPVTAERIIE-FRESKGSFKKI-----EDIMNVPRIGPKMFEQIKD 199


>gi|291461228|ref|ZP_06600301.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
 gi|291378193|gb|EFE85711.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I G   IG  +   +   + +++ I   + + L +IEGI   +   +
Sbjct: 190 DGIPGVTKIGEKKALAIFSKYDSLEKIYE-NIDDLKNIEGIGPSLIKNL 237


>gi|195977913|ref|YP_002123157.1| NAD-dependent DNA ligase LigA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|254781421|sp|B4U2C7|DNLJ_STREM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|195974618|gb|ACG62144.1| DNA ligase LigA [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 652

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  IG    RL+L+++G ++ +   + E LA I+G+   I   +  +F ++ +  
Sbjct: 502 GIRHIGAKASRLILETYGDLETLLSVTAEELAQIDGLGLVIGQSLVQYFQQDQATQ 557



 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I G+GP     L    L     V  I R S E L  ++GI +K A K+     ++ +++
Sbjct: 436 NIAGLGPAVVEKLYSAGLVH--DVTDIYRLSLEDLLMLDGIKEKSAEKLLAAIEQSKANS 493


>gi|212634787|ref|YP_002311312.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
 gi|254781417|sp|B8CN91|DNLJ_SHEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|212556271|gb|ACJ28725.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
          Length = 668

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 17/45 (37%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F T+  +  +S E    ++ +   +A  + +  
Sbjct: 520 VGEATAANLAAYFKTLDALKGASAEEFIKVDDVGAIVAAHLAHFL 564


>gi|160901849|ref|YP_001567430.1| DNA integrity scanning protein DisA [Petrotoga mobilis SJ95]
 gi|160359493|gb|ABX31107.1| protein of unknown function DUF147 [Petrotoga mobilis SJ95]
          Length = 369

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + +++SF  ++ +  ++ E L  I GI K+ A  I    +
Sbjct: 308 KKVVESFKNLQELMNATFEELTDISGIGKRRAEIILGTLN 347


>gi|57241980|ref|ZP_00369920.1| competence protein ComEA [Campylobacter upsaliensis RM3195]
 gi|57017172|gb|EAL53953.1| competence protein ComEA [Campylobacter upsaliensis RM3195]
          Length = 79

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 13/59 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIG  + + +L       F ++        E L  ++GI  K   +I +
Sbjct: 24  ATLEELKSLKGIGETKAKAILDYRKEQNFTSI--------EELKKVKGIGDKTFEEIKD 74


>gi|119512036|ref|ZP_01631131.1| DNA ligase [Nodularia spumigena CCY9414]
 gi|119463326|gb|EAW44268.1| DNA ligase [Nodularia spumigena CCY9414]
          Length = 678

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G +  +LL Q + TV+ ++ +    +A I GI  +IA  +Y  F  + +H
Sbjct: 522 GIRHVGSVNAQLLTQKYPTVEELATAKQSDIAGIYGIGAEIAQSVYQWFRIDANH 576


>gi|119774380|ref|YP_927120.1| DNA uptake protein-related DNA-binding protein [Shewanella
           amazonensis SB2B]
 gi|119766880|gb|ABL99450.1| DNA uptake protein-related DNA-binding protein [Shewanella
           amazonensis SB2B]
          Length = 103

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 8/51 (15%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599
           A  S L  + GIG  + + +++    +G       +S E L  + G+ +K+
Sbjct: 48  ATESELQLLKGIGQAKAKAIVEYRNQYG-----RFASVEDLTKVAGVGQKV 93


>gi|330444657|ref|YP_004377643.1| RecD/TraA family helicase [Chlamydophila pecorum E58]
 gi|328807767|gb|AEB41940.1| helicase, RecD/TraA family [Chlamydophila pecorum E58]
          Length = 741

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKIYNHFHK 609
             S L  I GIGP     ++++F T    +   +PE L  + GISK     +    H+
Sbjct: 87  LTSKL--IKGIGPKLATKIIETFQTETLNVLDLTPERLIEVPGISKARVESLCQQLHE 142


>gi|327394702|dbj|BAK12124.1| DNA ligase LigA [Pantoea ananatis AJ13355]
          Length = 672

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 22/50 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FG ++ +  +  + L +++ +   +A  + +   + ++
Sbjct: 520 VGEATAANLANHFGELQKVMDADLDALIAVQDVGTVVAKHVRHFMEEESN 569


>gi|319400926|gb|EFV89145.1| competence ComEA helix-hairpin-helix repeat region domain protein
           [Staphylococcus epidermidis FRI909]
          Length = 224

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  I GIGP + + +L        F ++          L  I+G  KK   K+  
Sbjct: 169 ATEEQLKNIPGIGPSKAKDILNYREKNNGFNSIN--------DLMKIKGFGKKTFEKLKE 220

Query: 606 HF 607
           HF
Sbjct: 221 HF 222


>gi|291618312|ref|YP_003521054.1| LigA [Pantoea ananatis LMG 20103]
 gi|291153342|gb|ADD77926.1| LigA [Pantoea ananatis LMG 20103]
          Length = 672

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 22/50 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G      L   FG ++ +  +  + L +++ +   +A  + +   + ++
Sbjct: 520 VGEATAANLANHFGELQKVMDADLDALIAVQDVGTVVAKHVRHFMEEESN 569


>gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
 gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
          Length = 916

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I G   IG  +   +   + +++ I   + + L +IEGI   +   +
Sbjct: 190 DGIPGVTKIGEKKALAIFSKYDSLEKIYE-NIDDLKNIEGIGPSLIKNL 237


>gi|227874488|ref|ZP_03992663.1| possible helix-hairpin-helix repeat-containing competence protein
           ComEA [Oribacterium sinus F0268]
 gi|227839677|gb|EEJ50132.1| possible helix-hairpin-helix repeat-containing competence protein
           ComEA [Oribacterium sinus F0268]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L+ + GIGP   + +++    +G        S E + +++ I  KI  KI  
Sbjct: 163 ATEQELESLKGIGPATAKNIIRYREEYGGFS-----SIEEIKNVKRIGDKIFEKIKA 214


>gi|251795439|ref|YP_003010170.1| 5'-3' exonuclease [Paenibacillus sp. JDR-2]
 gi|247543065|gb|ACT00084.1| 5'-3' exonuclease [Paenibacillus sp. JDR-2]
          Length = 285

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 10/53 (18%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI---YNHFH 608
            + GIG      LLQ F ++  I       L++++ +SK I  KI    +  H
Sbjct: 194 GVKGIGEKTALKLLQEFESIDGI-------LSNLDSVSKSIKAKIEADLDMLH 239


>gi|15078917|ref|NP_149668.1| 205R [Invertebrate iridescent virus 6]
 gi|82012211|sp|Q91FW5|VF205_IIV6 RecName: Full=Putative DNA ligase 205R
 gi|15042287|gb|AAK82067.1|AF303741_205 205R [Invertebrate iridescent virus 6]
          Length = 615

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           IG  +  LLLQ +  +  +       L SIEGI  K A +I  HF
Sbjct: 472 IGEKKILLLLQKYPNLFELENLDAIDLVSIEGIGSKTATQIKQHF 516


>gi|326773589|ref|ZP_08232872.1| competence protein [Actinomyces viscosus C505]
 gi|326636819|gb|EGE37722.1| competence protein [Actinomyces viscosus C505]
          Length = 257

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 14/53 (26%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK 598
           A+ S L+++ GIGP   + +++       F        +S + L  + GI K 
Sbjct: 202 ASASELEKLPGIGPALAQRIVEHRDSHGPF--------ASVDALTDVPGIGKA 246



 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S   L  + GI   +A +I  H
Sbjct: 198 NINTASASELEKLPGIGPALAQRIVEH 224


>gi|326389890|ref|ZP_08211454.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994158|gb|EGD52586.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIGP+    +++ F    G+ K I     E + ++  I  K+  +I +
Sbjct: 145 ATKEELQTLPGIGPVTAERIIE-FRENKGSFKKI-----EDIMNVPRIGPKMFEQIKD 196



 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+ ++ E L ++ GI    A +I   F +N   
Sbjct: 141 NINTATKEELQTLPGIGPVTAERIIE-FRENKGS 173


>gi|302388956|ref|YP_003824777.1| helicase, RecD/TraA family [Thermosediminibacter oceani DSM 16646]
 gi|302199584|gb|ADL07154.1| helicase, RecD/TraA family [Thermosediminibacter oceani DSM 16646]
          Length = 729

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF--HKNTSH 613
           I GIGP   + +++ FG  T++ I  SSP  L  I GI +K    I   F   K T  
Sbjct: 90  IKGIGPATAKKIVERFGENTLE-IMSSSPHRLMEIAGIGQKRLEMIVRSFAEQKETRE 146


>gi|257467825|ref|ZP_05631921.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 688

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K+R  +       I  IG    +LL ++   +  + +   E L  I+GI  K A  +Y+ 
Sbjct: 516 KKRDYSKVIYALGIPFIGKYSGKLLAEASRNIDNLMKMEIEELIEIDGIGDKGAKAVYDF 575

Query: 607 FHKNTS 612
                +
Sbjct: 576 LRDEEN 581


>gi|254168995|ref|ZP_04875834.1| Anticodon-binding domain family [Aciduliprofundum boonei T469]
 gi|197622101|gb|EDY34677.1| Anticodon-binding domain family [Aciduliprofundum boonei T469]
          Length = 1007

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I GI   R  LL +  +G++  +  + PE +A   G+  K+A ++ ++ 
Sbjct: 768 SIPGIDDYRAELLFKMGYGSIYELMEAEPEQIAEATGMPLKLANELIDYL 817


>gi|163814858|ref|ZP_02206246.1| hypothetical protein COPEUT_01008 [Coprococcus eutactus ATCC 27759]
 gi|158449797|gb|EDP26792.1| hypothetical protein COPEUT_01008 [Coprococcus eutactus ATCC 27759]
          Length = 797

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I G+G    + +++ F   ++++I    PE LA I GIS++ A +I   +++
Sbjct: 87  IKGVGEALAKRIVKKFKMDSLRIIEE-EPERLAEIRGISERKAREIAVSYNE 137


>gi|188995252|ref|YP_001929504.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
 gi|254781390|sp|B2RKL2|DNLJ_PORG3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|188594932|dbj|BAG33907.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
          Length = 669

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 17/76 (22%)

Query: 549 RKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +K+AA   LD I               GI   G    + L   + ++  ++ ++ E L  
Sbjct: 488 KKRAAAKLLDSIEASKARPYQAILFGLGIRFVGETVAKKLAAVYPSIDALAAATSEELVQ 547

Query: 592 IEGISKKIACKIYNHF 607
           I+ I ++IA  + + F
Sbjct: 548 IDEIGERIAAAVLHFF 563


>gi|148241522|ref|YP_001226679.1| Rossmann fold nucleotide-binding protein involved in DNA uptake
           [Synechococcus sp. RCC307]
 gi|147849832|emb|CAK27326.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
           uptak [Synechococcus sp. RCC307]
          Length = 364

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           ++ G+G  R + L Q+FG+++    +  E L ++ G+   +
Sbjct: 14  QVPGVGISRIKQLEQAFGSLQAAWWAPAEQLLALPGVGPSL 54


>gi|148271754|ref|YP_001221315.1| hypothetical protein CMM_0575 [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|147829684|emb|CAN00600.1| hypothetical protein CMM_0575 [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
          Length = 247

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 11 GVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTHRITHM--ISQINNIRF 60
          GVY   D  G  +YVG+    L+ RI+ ++ +         +  + ++  +  
Sbjct: 33 GVYAFYDYDGEPIYVGQTNERLRTRIRRHLTNQRTDAVAMRILDVFEVAAVEV 85


>gi|307243483|ref|ZP_07525634.1| comEA protein [Peptostreptococcus stomatis DSM 17678]
 gi|306493127|gb|EFM65129.1| comEA protein [Peptostreptococcus stomatis DSM 17678]
          Length = 261

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+ I G+GP   + ++    T +    +  E + ++ GI  K    + +  
Sbjct: 209 SLESIPGVGPATAKKIVDY-RTKQGKFNA-IEDIKNVSGIGDKKFESMKDFI 258


>gi|237756712|ref|ZP_04585213.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691122|gb|EEP60229.1| DNA ligase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 215

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G +  + L  +   +  +   +   L  +  +  K+A +IYN FH   +
Sbjct: 63  VGEVTAKTLASAVKCIDDLKDFTITDLIKLPDVGDKVASEIYNFFHNQQN 112


>gi|260590048|ref|ZP_05855961.1| helicase, RecD/TraA family [Blautia hansenii DSM 20583]
 gi|260539560|gb|EEX20129.1| helicase, RecD/TraA family [Blautia hansenii DSM 20583]
          Length = 744

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ FG  T+  I  + PE LA ++GIS++ A +I
Sbjct: 89  IKGIGAALAARIVRHFGDDTL-RIIETEPERLAEVKGISERKAREI 133


>gi|331084364|ref|ZP_08333468.1| RecD/TraA family helicase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330401628|gb|EGG81209.1| RecD/TraA family helicase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 744

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ FG  T+  I  + PE LA ++GIS++ A +I
Sbjct: 89  IKGIGAALAARIVRHFGDDTL-RIIETEPERLAEVKGISERKAREI 133


>gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
 gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
          Length = 878

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            I G+GP     LL ++G+V+ +  +  E ++      KK+  ++  +
Sbjct: 200 GIPGVGPKTASKLLLAYGSVENVL-AHVEDVS-----GKKLKERLMEY 241


>gi|92118342|ref|YP_578071.1| helicase RecD/TraA [Nitrobacter hamburgensis X14]
 gi|91801236|gb|ABE63611.1| Helicase RecD/TraA [Nitrobacter hamburgensis X14]
          Length = 733

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 18/71 (25%)

Query: 549 RKKAAYSP----LDEIN---------GIGPLRKRLLLQSFGTVKMI---SRSSPETLASI 592
           R K   +     LD I          GIGP+  + L+++FG  + +     + PE L  +
Sbjct: 75  RAKFLKTSEPTSLDGIEKYLGSGMIRGIGPVYAKKLVRAFG--EKVFDTIEAEPERLREV 132

Query: 593 EGISKKIACKI 603
            GI    A +I
Sbjct: 133 TGIGPVRAYRI 143


>gi|302344112|ref|YP_003808641.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075]
 gi|301640725|gb|ADK86047.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075]
          Length = 691

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 18/65 (27%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSS---------------PETLASIEGISKKIACKI 603
            I G+G    +LL Q  G+++ +  ++                + +A   G+  K A  I
Sbjct: 521 GIPGVGQETAKLLAQRLGSLEALVAAADGWRKPAKDRPAGLYLDDIA---GVGPKTAEDI 577

Query: 604 YNHFH 608
              F 
Sbjct: 578 QRFFQ 582


>gi|256752162|ref|ZP_05493028.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748976|gb|EEU62014.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIGP+    +++ F    G+ K I     E + ++  I  K+  +I +
Sbjct: 145 ATKEELQTLPGIGPVTAERIIE-FRENKGSFKKI-----EDIMNVPRIGPKMFEQIKD 196



 Score = 37.8 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I+ ++ E L ++ GI    A +I   F +N   
Sbjct: 141 NINTATKEELQTLPGIGPVTAERIIE-FRENKGS 173


>gi|188586429|ref|YP_001917974.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351116|gb|ACB85386.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 571

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRS-SPETLASIEGISKKIACKIYNHFHK-NTSHT 614
            I G+G    + L    G  ++  +  +   + +  + G  +KI  KI     K  +S  
Sbjct: 95  GIPGVGVKSAQKLYYQLGISSLNQLKEACEQDQIKELPGFGEKIQEKILQGISKVESSER 154

Query: 615 PT 616
            T
Sbjct: 155 ET 156


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            I GIG      LL+ +G+++ I  +  + LA
Sbjct: 193 GIPGIGEKTASRLLKEYGSLEEII-AHADELA 223


>gi|146302868|ref|YP_001190184.1| ERCC4 domain-containing protein [Metallosphaera sedula DSM 5348]
 gi|145701118|gb|ABP94260.1| ERCC4 domain protein [Metallosphaera sedula DSM 5348]
          Length = 230

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 547 KRRKKAAYSPLDE--------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
               K  +  LDE        +  +G      LL  F TV+ I  SS   L  +   S+K
Sbjct: 142 SLHDKPKFESLDEMQLYLVQSLPNVGGKIALRLLTEFSTVRNICNSSIADLERVMK-SRK 200

Query: 599 IACKIYNHFH 608
            A  +Y  F+
Sbjct: 201 KAELLYKIFN 210


>gi|34540958|ref|NP_905437.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
 gi|81417286|sp|Q7MV47|DNLJ_PORGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|34397273|gb|AAQ66336.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
          Length = 669

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 17/76 (22%)

Query: 549 RKKAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLAS 591
           +K+AA   LD I               GI   G    + L   + ++  ++ ++ E L  
Sbjct: 488 KKRAAAKLLDSIEASKARPYQAILFGLGIRFVGETVAKKLAAVYPSIDALAAATSEELVQ 547

Query: 592 IEGISKKIACKIYNHF 607
           I+ I ++IA  + + F
Sbjct: 548 IDEIGERIAAAVLHFF 563


>gi|139438245|ref|ZP_01771798.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC
           25986]
 gi|133776442|gb|EBA40262.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC
           25986]
          Length = 742

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + F ++  +  +S E +A  EGI  KIA  +    
Sbjct: 583 ERFLSIDKLILASEEDIAECEGIGPKIAASVKQFL 617


>gi|295838943|ref|ZP_06825876.1| competence protein CelA [Streptomyces sp. SPB74]
 gi|295827256|gb|EDY42432.2| competence protein CelA [Streptomyces sp. SPB74]
          Length = 345

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 14/57 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            LD + G+GP+  + +L        FG+V        + L  + GI  +   ++  +
Sbjct: 294 QLDGLPGVGPVLAQRILDHRTAHGGFGSV--------DELREVSGIGARRFAELREY 342


>gi|170076878|ref|YP_001733516.1| exinuclease activity [Synechococcus sp. PCC 7002]
 gi|169884547|gb|ACA98260.1| conserved hypothetical protein; probable exinuclease activity
          [Synechococcus sp. PCC 7002]
          Length = 291

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 2  SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY---MHSNNHTHRIT-HMISQINN 57
             Q+P CP +Y ++D    + Y+G+A +L+KR +++      +    +    +   I N
Sbjct: 17 DLRQLPNCPAIYFVVDSKNIIQYIGQAKDLEKRWRNHHRKFQLDQINEKYPIRLYWIILN 76

Query: 58 IRFTVTCTEVEALLLEANMIKRLKPRFN 85
          +    T         E + I++ KP  N
Sbjct: 77 LDDLKTA--------EKHFIEKYKPLLN 96


>gi|314933806|ref|ZP_07841171.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87]
 gi|313653956|gb|EFS17713.1| holliday junction DNA helicase RuvA [Staphylococcus caprae C87]
          Length = 200

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  +   + R+        L    GI KK A +I
Sbjct: 68  KDMFHSLIKVTGIGPKSALAILAA-SSPNGVKRAIENENDAYLTQFPGIGKKTARQI 123


>gi|291614511|ref|YP_003524668.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Sideroxydans lithotrophicus ES-1]
 gi|291584623|gb|ADE12281.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Sideroxydans lithotrophicus ES-1]
          Length = 153

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 9/54 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR---SSPETLASIEGIS-KKIAC 601
           A+   LD + GIGP + + ++              +S E L  ++G   K +A 
Sbjct: 27  ASKDELDAVKGIGPAKAQAIIDY-----RTKNGPFASVEDLKHVKGFGDKTVAK 75


>gi|218439363|ref|YP_002377692.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7424]
 gi|218172091|gb|ACK70824.1| helicase, RecD/TraA family [Cyanothece sp. PCC 7424]
          Length = 747

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598
           K   S L  I G+GP+  R ++  FG  T+++I   + E L  + GI KK
Sbjct: 97  KYLGSGL--IKGLGPVMARRIVAHFGLETLEIIENKT-ERLIEVPGIGKK 143


>gi|218441378|ref|YP_002379707.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424]
 gi|226725437|sp|B7K970|RUVA_CYAP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|218174106|gb|ACK72839.1| Holliday junction DNA helicase RuvA [Cyanothece sp. PCC 7424]
          Length = 209

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI 603
           +  +  L  ING+G      L+ + G ++ +  +      +TL+   G+  K A +I
Sbjct: 75  RDLFRQLININGVGTQTAIALIDTLG-IEALINAIVTNDVKTLSKTPGVGPKTAERI 130


>gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
 gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
          Length = 916

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I G   IG  +   +   + +++ I   + + L +IEGI   +   +
Sbjct: 190 DGIPGVTKIGEKKALAIFSKYDSLEKIYE-NIDDLKNIEGIGPSLIKNL 237


>gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164]
 gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164]
          Length = 919

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +G++  I       L ++E I  +++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLNEYGSLGGI-------LENVEHIKGRVSQSIKDNL 228


>gi|242242867|ref|ZP_04797312.1| competence protein comEA [Staphylococcus epidermidis W23144]
 gi|242233680|gb|EES35992.1| competence protein comEA [Staphylococcus epidermidis W23144]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  I GIGP + + +L        F ++          L  I+G  KK   K+  
Sbjct: 165 ATEEQLKNIPGIGPSKAKDILNYREKNNGFNSIN--------DLMKIKGFGKKTFEKLKE 216

Query: 606 HF 607
           HF
Sbjct: 217 HF 218


>gi|193213809|ref|YP_001995008.1| NAD-dependentDNA ligase [Chloroherpeton thalassium ATCC 35110]
 gi|254781288|sp|B3QSH0|DNLJ_CHLT3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193087286|gb|ACF12561.1| DNA ligase, NAD-dependent [Chloroherpeton thalassium ATCC 35110]
          Length = 684

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G     +L   F ++  I  +S   L   E I + IA  +   F
Sbjct: 531 VGRRTASILADRFTSLDTIKSASQAELCETEEIGETIAKSVALFF 575


>gi|223936891|ref|ZP_03628800.1| DNA ligase, NAD-dependent [bacterium Ellin514]
 gi|223894460|gb|EEF60912.1| DNA ligase, NAD-dependent [bacterium Ellin514]
          Length = 680

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +G    + L + F T+  I  +S E L  +E I + IA  I    H+   +
Sbjct: 528 VGAGVAKRLGRRFTTLDDIFAASQEQLTEVEDIGEVIAHSIVQW-HQEPKN 577


>gi|168185943|ref|ZP_02620578.1| helicase, RecD/TraA family [Clostridium botulinum C str. Eklund]
 gi|169296129|gb|EDS78262.1| helicase, RecD/TraA family [Clostridium botulinum C str. Eklund]
          Length = 735

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I+GIGP+  + +++ FG  T+  I     E L  I+GI  K    I
Sbjct: 88  ISGIGPVTAQKIVEYFGEKTLD-ILDEDIEKLKEIDGIGTKKVETI 132


>gi|110668724|ref|YP_658535.1| 50S ribosomal protein L32e [Haloquadratum walsbyi DSM 16790]
 gi|109626471|emb|CAJ52932.1| ribosomal protein L32.eR [Haloquadratum walsbyi DSM 16790]
          Length = 317

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           ++I+G+G  R   L ++ + + + I  +S   LA ++ I   +A +I  
Sbjct: 78  EDISGVGSDRAESLREAGYDSFEDIRAASQSALADVDDIGNALAARIKA 126


>gi|312134462|ref|YP_004001800.1| DNA repair protein radc [Caldicellulosiruptor owensensis OL]
 gi|311774513|gb|ADQ04000.1| DNA repair protein RadC [Caldicellulosiruptor owensensis OL]
          Length = 230

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ +FG++  +  + PE L  + GI K  A  I
Sbjct: 50  RLISTFGSISNVFEAHPEDLQKVNGIGKNSAILI 83


>gi|303234611|ref|ZP_07321245.1| helicase, RecD/TraA family [Finegoldia magna BVS033A4]
 gi|302494274|gb|EFL54046.1| helicase, RecD/TraA family [Finegoldia magna BVS033A4]
          Length = 743

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
             S L  I GIG    R +++ FG  T++++   SP  L  ++GI KK   KI     +
Sbjct: 82  LQSGL--IKGIGETTARRIVEEFGEDTMEILKN-SPSKLLQVKGIGKKNYKKIKESLDE 137


>gi|297587888|ref|ZP_06946532.1| RecD/TraA family helicase [Finegoldia magna ATCC 53516]
 gi|297574577|gb|EFH93297.1| RecD/TraA family helicase [Finegoldia magna ATCC 53516]
          Length = 743

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
             S L  I GIG    R +++ FG  T++++   SP  L  ++GI KK   KI     +
Sbjct: 82  LQSGL--IKGIGETTARRIVEEFGEDTMEILKN-SPSKLLQVKGIGKKNYKKIKESLDE 137


>gi|169825196|ref|YP_001692807.1| ATP-dependent exodeoxyribonuclease subunit alpha [Finegoldia magna
           ATCC 29328]
 gi|167832001|dbj|BAG08917.1| ATP-dependent exodeoxyribonuclease alpha subunit [Finegoldia magna
           ATCC 29328]
          Length = 743

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
             S L  I GIG    R +++ FG  T++++   SP  L  ++GI KK   KI     +
Sbjct: 82  LQSGL--IKGIGETTARRIVEEFGEDTMEILKN-SPSKLLQVKGIGKKNYKKIKESLDE 137


>gi|163781568|ref|ZP_02176568.1| hypothetical protein HG1285_01758 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882788|gb|EDP76292.1| hypothetical protein HG1285_01758 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 336

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 7/52 (13%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA-------CKIYN 605
            G+G +    L ++FG  + I  +  + L    G S+  A        K+Y 
Sbjct: 14  KGVGEITLYRLYKTFGGAENILSADYKDLKGCVGESRARAILSGDFDEKVYE 65


>gi|189502567|ref|YP_001958284.1| hypothetical protein Aasi_1230 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498008|gb|ACE06555.1| hypothetical protein Aasi_1230 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 374

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA-SIEGISKKIACKIYN 605
            L  I GIG    + +++ F T + I ++S  +L  ++ GI   I   I  
Sbjct: 11  ALSLIKGIGFNTWKRIIEKFKTAQAIFQASKTSLTGNLPGIPLSIIQAILA 61


>gi|116621518|ref|YP_823674.1| DNA protecting protein DprA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224680|gb|ABJ83389.1| DNA protecting protein DprA [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 391

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L  + G+G      LL  F T + I R+S   L +  G+S  +A  +
Sbjct: 16  ALKLVPGLGARTSGKLLDRFRTPQAIFRASRTELEAA-GLSGAVAQSV 62


>gi|297621459|ref|YP_003709596.1| DNA repair protein radC family [Waddlia chondrophila WSU 86-1044]
 gi|297376760|gb|ADI38590.1| DNA repair protein radC family [Waddlia chondrophila WSU 86-1044]
          Length = 231

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L+  FG ++ ++ ++ E L  + G+    A K+   F
Sbjct: 48  KELIARFGGLRHLADATIEELLQMRGVGTAQAIKLKAAF 86


>gi|110833810|ref|YP_692669.1| NAD-dependent DNA ligase LigA [Alcanivorax borkumensis SK2]
 gi|123345666|sp|Q0VR01|DNLJ_ALCBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110646921|emb|CAL16397.1| DNA ligase (NAD+) [Alcanivorax borkumensis SK2]
          Length = 777

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           IG    + L   FG +  I  +    L ++  +  ++A  I   F ++ +  
Sbjct: 523 IGEETAKNLADCFGDLDSIRHAPLLLLLAVPDVGLEVAKAIGAFFAESDNEA 574


>gi|332527517|ref|ZP_08403569.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus
           JA2]
 gi|332111924|gb|EGJ11902.1| Holliday junction DNA helicase RuvA [Rubrivivax benzoatilyticus
           JA2]
          Length = 192

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPET----LASIEGISKKIACKIYN 605
           +A +  L +I+G+GP     LL   G +V  +S++        L  + GI KK A ++  
Sbjct: 69  RATFRLLVKISGVGPRMALALLS--GLSVAELSQAVAAQDGARLVKVPGIGKKTAERVLL 126

Query: 606 HFH 608
              
Sbjct: 127 ELK 129


>gi|197294788|ref|YP_001799329.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense]
 gi|254781387|sp|B1VAY1|DNLJ_PHYAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|171854115|emb|CAM12104.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense]
          Length = 670

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 547 KRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPETL---ASIEGISKKIAC 601
           K + K+  + L    I  +G    ++L + F +++++ +++ E L    SI  I +KIA 
Sbjct: 498 KSKNKSLENVLFGLGIKHVGLKVSQVLTKHFDSIEILQKTTLENLESIKSIPEIGEKIAL 557

Query: 602 KIYNHFHK 609
            +  +F  
Sbjct: 558 SLQKYFQN 565


>gi|147669902|ref|YP_001214720.1| DNA repair protein RadC [Dehalococcoides sp. BAV1]
 gi|146270850|gb|ABQ17842.1| DNA repair protein RadC [Dehalococcoides sp. BAV1]
          Length = 272

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 16/71 (22%)

Query: 542 ITTHRKR-RKKAAYSPLDEING---------IGPLRK------RLLLQSFGTVKMISRSS 585
              HR+R R++   + LD +N          +G  R+      +  +++FG+++ +  +S
Sbjct: 20  NEGHRQRLRERFLKAGLDGLNDYEVVELLLTLGTPRRDCKQAAKEAIKNFGSLRAVLEAS 79

Query: 586 PETLASIEGIS 596
           PE L+ I+GI 
Sbjct: 80  PEELSGIKGIG 90


>gi|332799127|ref|YP_004460626.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Tepidanaerobacter sp. Re1]
 gi|332696862|gb|AEE91319.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Tepidanaerobacter sp. Re1]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 557 LDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           L++++GIGP     +L         T   I     + L  + GI KK A KI        
Sbjct: 76  LNKVSGIGPKAAISILSLMDVARLKT--SILSEDVKDLVKVPGIGKKTAQKIIIELKDRI 133

Query: 612 SHTP 615
              P
Sbjct: 134 KDLP 137


>gi|329767086|ref|ZP_08258614.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341]
 gi|328837811|gb|EGF87436.1| Holliday junction DNA helicase RuvA [Gemella haemolysans M341]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 14/82 (17%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGT-----VKMISRSSPETLASIEGISKKIAC 601
            + +K  +  L ++ G+GP     +L   G      +  I       L    GI KK A 
Sbjct: 62  NKDQKKVFLLLLKVKGVGPKSALAILA--GGTSEEIIGAIENQDVNYLTKFPGIGKKSAQ 119

Query: 602 KIYNHFHK-------NTSHTPT 616
           +I             N S  PT
Sbjct: 120 QIILDLQGKVDFSMTNISSAPT 141


>gi|325977951|ref|YP_004287667.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177879|emb|CBZ47923.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 652

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R LL+ F T+  +  +  +++ASI+G+   IA  + ++F K  +
Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGTVIANSLRSYFAKKEA 555



 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 559 EINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+GP   + L +        V  I + + E L S++G  +K A K+YN   
Sbjct: 436 NITGLGPSIVKKLFKAELVH--DVADIYQLTVEDLLSLDGFKEKSAEKLYNAIQ 487


>gi|320546461|ref|ZP_08040776.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812]
 gi|320448846|gb|EFW89574.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812]
          Length = 652

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R LL+ F T+  +  +  +++ASI+G+   IA  + ++F K  +
Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGTVIANSLRSYFAKKEA 555



 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 559 EINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+GP   + L +        V  I + + E L S++G  +K A K+YN   
Sbjct: 436 NITGLGPSIVKKLFKAELVH--DVADIYQLTVEDLLSLDGFKEKSAEKLYNAIQ 487


>gi|306831054|ref|ZP_07464215.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426620|gb|EFM29731.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 652

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R LL+ F T+  +  +  +++ASI+G+   IA  + ++F K  +
Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGTVIANSLRSYFAKKEA 555



 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 559 EINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+GP   + L +        V  I + + E L S++G  +K A K+YN   
Sbjct: 436 NITGLGPSIVKKLFKAELVH--DVADIYQLTVEDLLSLDGFKEKSAEKLYNAIQ 487


>gi|302380431|ref|ZP_07268899.1| helicase, RecD/TraA family [Finegoldia magna ACS-171-V-Col3]
 gi|302311742|gb|EFK93755.1| helicase, RecD/TraA family [Finegoldia magna ACS-171-V-Col3]
          Length = 743

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
             S L  I GIG    R +++ FG  T++++   SP  L  ++GI KK   KI     +
Sbjct: 82  LQSGL--IKGIGETTARRIVEEFGEDTMEILKN-SPSKLLQVKGIGKKNYKKIKESLDE 137


>gi|288904984|ref|YP_003430206.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34]
 gi|288731710|emb|CBI13271.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34]
          Length = 652

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R LL+ F T+  +  +  +++ASI+G+   IA  + ++F K  +
Sbjct: 502 GIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGTVIANSLRSYFAKKEA 555



 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 559 EINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I G+GP   + L +        V  I + + E L S++G  +K A K+YN   
Sbjct: 436 NITGLGPSIVKKLFKVELVH--DVADIYQLTVEDLLSLDGFKEKSAEKLYNAIQ 487


>gi|255656481|ref|ZP_05401890.1| putative competence protein [Clostridium difficile QCD-23m63]
          Length = 222

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LD + G+G      +LQ       F ++        E + ++ GI  K    I +
Sbjct: 170 ELDSLPGVGEATANKILQHREENGQFSSI--------EEIKNVNGIGDKKYENIKD 217


>gi|197284032|ref|YP_002149904.1| competence protein [Proteus mirabilis HI4320]
 gi|227358097|ref|ZP_03842439.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Proteus mirabilis ATCC 29906]
 gi|194681519|emb|CAR40406.1| putative competence protein [Proteus mirabilis HI4320]
 gi|227161832|gb|EEI46864.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Proteus mirabilis ATCC 29906]
          Length = 124

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMI-SRSSPETLASIEGISKKIACK 602
           A    L  + GIG  + + ++      + +   +S + LA + GI  K+  +
Sbjct: 68  ATLDELMTLKGIGKAKAQAIIDY---REKVGRFASFDDLAKVFGIGMKLIEQ 116



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 581 ISRSSPETLASIEGISKKIACKIYNH 606
           I+ ++ + L +++GI K  A  I ++
Sbjct: 65  INSATLDELMTLKGIGKAKAQAIIDY 90


>gi|73749140|ref|YP_308379.1| RadC family DNA repair protein [Dehalococcoides sp. CBDB1]
 gi|289433114|ref|YP_003462987.1| DNA repair protein RadC [Dehalococcoides sp. GT]
 gi|73660856|emb|CAI83463.1| DNA repair protein, RadC family [Dehalococcoides sp. CBDB1]
 gi|288946834|gb|ADC74531.1| DNA repair protein RadC [Dehalococcoides sp. GT]
          Length = 272

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 16/71 (22%)

Query: 542 ITTHRKR-RKKAAYSPLDEING---------IGPLRK------RLLLQSFGTVKMISRSS 585
              HR+R R++   + LD +N          +G  R+      +  +++FG+++ +  +S
Sbjct: 20  NEGHRQRLRERFLKAGLDGLNDYEVVELLLTLGTPRRDCKQAAKEAIKNFGSLRAVLEAS 79

Query: 586 PETLASIEGIS 596
           PE L+ I+GI 
Sbjct: 80  PEELSGIKGIG 90


>gi|227822641|ref|YP_002826613.1| NAD-dependent DNA ligase LigA [Sinorhizobium fredii NGR234]
 gi|254781400|sp|C3MEL9|DNLJ_RHISN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227341642|gb|ACP25860.1| DNA ligase [Sinorhizobium fredii NGR234]
          Length = 717

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 42/104 (40%)

Query: 548 RRKKAAYSPLDEING--------------------------------IGPLRKRLLLQSF 575
           RR++A+ + L+ I G                                +G    +LL +S+
Sbjct: 512 RRQEASLTKLENIEGFGKVSVRKLYEAINARREIALHRFIYALGIRHVGETTAKLLARSY 571

Query: 576 GTVKMISRSSPE----------TLASIEGISKKIACKIYNHFHK 609
           GT +    +  +           L SIEGI + +A  I   + +
Sbjct: 572 GTYEHFRAAMVDAGSLAGDAWNELNSIEGIGEVVARAIVEFYKE 615


>gi|187929782|ref|YP_001900269.1| DNA repair protein RadC [Ralstonia pickettii 12J]
 gi|238691809|sp|B2UAP0|Y2712_RALPJ RecName: Full=UPF0758 protein Rpic_2712
 gi|187726672|gb|ACD27837.1| DNA repair protein RadC [Ralstonia pickettii 12J]
          Length = 224

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R LL  FG++  +  +S +  +SI G+        Y   H
Sbjct: 48  RELLAHFGSLARLCHASQQEFSSINGMGPAK----YAQLH 83


>gi|38233671|ref|NP_939438.1| NAD-dependent DNA ligase LigA [Corynebacterium diphtheriae NCTC
           13129]
 gi|81401524|sp|Q6NHQ4|DNLJ_CORDI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|38199932|emb|CAE49600.1| DNA ligase [Corynebacterium diphtheriae]
          Length = 677

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF----HKN 610
            I  +GP   R L   + +++ +  +  E +A+ EG+   IA      F    H+N
Sbjct: 522 SIRHVGPTAARALAVRYRSLEALRAADVEDIANTEGVGAIIAQSFAQWFDVPWHRN 577


>gi|303327272|ref|ZP_07357714.1| DNA repair protein RadC [Desulfovibrio sp. 3_1_syn3]
 gi|302863260|gb|EFL86192.1| DNA repair protein RadC [Desulfovibrio sp. 3_1_syn3]
          Length = 230

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 556 PLDEINGIGPLRK------RLLLQSFGTVKMISRSSPETLASIEGISKKI 599
            L+ + G G  RK      + LL+ FG+++    + P+ L  + G    +
Sbjct: 35  VLELLLGYGLTRKDTKPLAKELLRRFGSIRGALDARPDELLQVPGFGPGL 84


>gi|288801242|ref|ZP_06406697.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331853|gb|EFC70336.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 666

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    RLL + F  +  +  ++   L  +EG+   IA  +   F    +
Sbjct: 516 VGETSARLLARKFNDINSLRNATAAQLLEVEGVGDIIATSVVTFFSDEKN 565


>gi|171778643|ref|ZP_02919739.1| hypothetical protein STRINF_00591 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282600|gb|EDT48024.1| hypothetical protein STRINF_00591 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 226

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 12/58 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604
           A    L  I+GIG  R + ++           +     S + L +I GI +K   K+ 
Sbjct: 170 ATTEELQTISGIGAKRAQDIIDY-------RDANGGFSSVDDLKNISGIGEKTLEKLK 220


>gi|145502396|ref|XP_001437176.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404325|emb|CAK69779.1| unnamed protein product [Paramecium tetraurelia]
          Length = 836

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/292 (9%), Positives = 72/292 (24%), Gaps = 18/292 (6%)

Query: 126 ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
            +     +  N         +  ++  ++ +  CL+  + +C     G    E   + + 
Sbjct: 52  PNTRQCVEMCNCKDLVSLQNNDCNNCIQNCSSECLVCILDKCYACLEGWQLIEHKCQQIC 111

Query: 186 -------EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
                   + +    GN+ +++     + Q      +       + L   S+ +  +   
Sbjct: 112 GDNQVALTSNEQCDDGNYFIEDGCNECLFQCGPYCQF--CNKELNCLICESNFKLVHHLC 169

Query: 239 YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST-NAQILSYFLRQFYTDK 297
                   +              + G                +   Q +     +F   K
Sbjct: 170 APICGDKIVISGLEECDDGNDIKYDGCFECQFQCNFGCKICESGKCQDVCKVDEEFINGK 229

Query: 298 PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN--------AH 349
             P  ++ SEE +       +          +   +          +  N          
Sbjct: 230 CIPIVLIKSEEIDPNQSECKNHCLVCDGANCLRCKQDYILENNKCFSCGNGIITKDEECE 289

Query: 350 RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVV 401
             +        +   I +D+    +L  + +   I   S +   S      V
Sbjct: 290 DGNRINSDGCSNQCKIEEDWNCIDSLSFLSQCFPIAKISIVFLNSTFNTQYV 341


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           D I G   IG    R LL  +G+++ +  +  + L+    + KK+
Sbjct: 187 DNIPGVEGIGEKTARRLLAEYGSLEGVY-AHLDELS--PSLRKKL 228


>gi|329299043|ref|NP_001192289.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 4 [Bos taurus]
 gi|296473370|gb|DAA15485.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 4 [Bos taurus]
          Length = 916

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ GI     R L+     +  ++    + LAS+ G +   A ++Y+  H + + 
Sbjct: 852 LLKMPGINAKNCRSLMNHVKNIAELASLPFDELASMLG-NTASARQLYDFIHTSYAE 907


>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
 gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
          Length = 921

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +G++  I       +A+++ +  K++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGSLNNI-------IANVDQLKGKLSQNIKDNL 228


>gi|254458916|ref|ZP_05072339.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1]
 gi|207084187|gb|EDZ61476.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 34/80 (42%), Gaps = 16/80 (20%)

Query: 541 AITTHRKRRKKAAYSPLD--------------EINGIGPLRKRLLLQSFGTVKMISRSSP 586
           A+   ++++ +   + L+               I  +G +  + L ++FG+      ++ 
Sbjct: 471 ALEGFKEKKSQNLLNSLEAAKGCDYWRFINSLGIEHVGEVASKTLSENFGS--SFIDATK 528

Query: 587 ETLASIEGISKKIACKIYNH 606
           E + + +GI +++A  +   
Sbjct: 529 EEIVACDGIGEEMAESVLEF 548


>gi|46447394|ref|YP_008759.1| NAD-dependent DNA ligase LigA [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81626502|sp|Q6MAB5|DNLJ_PARUW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|46401035|emb|CAF24484.1| probable DNA ligase [Candidatus Protochlamydia amoebophila UWE25]
          Length = 665

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           EI  IG     LL    GT++ + + + E L  IEG+  K+A  +  HF  
Sbjct: 513 EIKYIGIGTAELLAARAGTIETLMQLNEEDLIKIEGVGGKVAQAVVEHFQN 563


>gi|311993224|ref|YP_004010090.1| endonuclease II [Enterobacteria phage CC31]
 gi|284178062|gb|ADB81728.1| endonuclease II [Enterobacteria phage CC31]
          Length = 137

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 22/96 (22%)

Query: 19  AGRVLYVGKAYNLQKRIKSY---------MHSNNHTHRI--THMISQINNIRFTVT---- 63
              ++Y+GK  NL+KRI  Y            +  + +I    M  +  +          
Sbjct: 42  DDELVYIGKTKNLRKRINYYRTAINRKDQTSDSTKSAKIYDALMSGKTVSFYARQCFNLL 101

Query: 64  -CTEVEAL------LLEANMIKRLKPRFNILLRDDK 92
              E+  +      L E   IK+  P +N   +  K
Sbjct: 102 INNELGEMSISTMDLEEPMFIKKFNPPWNTQHKGKK 137


>gi|284097329|ref|ZP_06385461.1| UvrABC system protein C [Candidatus Poribacteria sp. WGA-A3]
 gi|283831159|gb|EFC35137.1| UvrABC system protein C [Candidatus Poribacteria sp. WGA-A3]
          Length = 110

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 36/84 (42%)

Query: 155 RTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKED 214
             R C  + +KRC  PC   I+ E+Y E + +    L G    ++  +    ++A+   +
Sbjct: 25  GFRACFQYDLKRCDAPCAALITRERYGEMITDIVNLLDGEYEEVQTSLVAKRDRASEALE 84

Query: 215 YESAIIHRDRLAALSHIQNHNDSI 238
           +E A   + +L  +  +    D  
Sbjct: 85  FERAASFQKQLQRIQKVFTFLDVH 108


>gi|317128494|ref|YP_004094776.1| hypothetical protein Bcell_1783 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473442|gb|ADU30045.1| hypothetical protein Bcell_1783 [Bacillus cellulosilyticus DSM
           2522]
          Length = 398

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL  I G GP     LL  FG  + ++  +  E L  +  +   IA  I   
Sbjct: 330 PLQFIRGCGPKTLDKLLSHFGNEMVVLHEAPVEDLKKV--VPSNIANNIIKA 379


>gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
          Length = 908

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI-ACKI 603
           D I G   IGP +   +L+ +G ++ +   + + L  I GI K + A  I
Sbjct: 190 DGIPGVRKIGPKKAAPMLEKYGDLEGVYE-NIDKLTEIPGIGKSLIANMI 238


>gi|253826950|ref|ZP_04869835.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT
           98-5491]
 gi|253510356|gb|EES89015.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT
           98-5491]
          Length = 82

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 13/62 (20%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA    L  I GIG  + + ++       F ++        + L +++G   K   KI  
Sbjct: 22  KANKEELMSIKGIGEAKAQAIIDYREKTPFKSI--------DDLKNVKGFGSKSIQKIRK 73

Query: 606 HF 607
             
Sbjct: 74  DL 75


>gi|83858758|ref|ZP_00952280.1| DNA repair protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853581|gb|EAP91433.1| DNA repair protein [Oceanicaulis alexandrii HTCC2633]
          Length = 213

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + L+  FG +  +  +    L  ++G+S+K A
Sbjct: 37  KALIARFGGLGGVCAADLHQLKEVKGVSEKTA 68


>gi|325205349|gb|ADZ00802.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M04-240196]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L +++GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123


>gi|325203753|gb|ADY99206.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240355]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|325197886|gb|ADY93342.1| DNA ligase, NAD-dependent [Neisseria meningitidis G2136]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|325141882|gb|EGC64324.1| DNA ligase, NAD-dependent [Neisseria meningitidis 961-5945]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|325137931|gb|EGC60506.1| DNA ligase, NAD-dependent [Neisseria meningitidis ES14902]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|325131881|gb|EGC54581.1| DNA ligase, NAD-dependent [Neisseria meningitidis M6190]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|325128974|gb|EGC51825.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis N1568]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L +++GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123


>gi|325127826|gb|EGC50734.1| DNA ligase, NAD-dependent [Neisseria meningitidis N1568]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|320160780|ref|YP_004174004.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea
           thermophila UNI-1]
 gi|319994633|dbj|BAJ63404.1| Holliday junction ATP-dependent DNA helicase RuvA [Anaerolinea
           thermophila UNI-1]
          Length = 191

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKIYNHFH 608
           L  +NGIGP     +L    +V  I R+        L+ + G+ +K A KI     
Sbjct: 74  LLGVNGIGPRLAISILSVL-SVDAIRRAILSEQPEVLSRVPGVGRKNAQKIILSLQ 128


>gi|304389092|ref|ZP_07371136.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           meningitidis ATCC 13091]
 gi|304336965|gb|EFM03155.1| crossover junction ATP-dependent DNA helicase RuvA [Neisseria
           meningitidis ATCC 13091]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L +++GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123


>gi|299533018|ref|ZP_07046405.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44]
 gi|298719242|gb|EFI60212.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni S44]
          Length = 191

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603
           R++  +  L +I GIGP     +L   G ++  ++ + S +    L  + GI KK A ++
Sbjct: 67  RERQTFRELIKITGIGPRMALAVLS--GMSIDDLADAVSQQQAGRLVKVPGIGKKTAERL 124

Query: 604 YNHFH 608
                
Sbjct: 125 LLELK 129


>gi|296313720|ref|ZP_06863661.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC
           43768]
 gi|296839643|gb|EFH23581.1| holliday junction DNA helicase RuvA [Neisseria polysaccharea ATCC
           43768]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L +++GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123


>gi|268681538|ref|ZP_06148400.1| DNA ligase [Neisseria gonorrhoeae PID332]
 gi|268621822|gb|EEZ54222.1| DNA ligase [Neisseria gonorrhoeae PID332]
          Length = 829

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 594 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 649


>gi|268600753|ref|ZP_06134920.1| DNA ligase [Neisseria gonorrhoeae PID18]
 gi|268683767|ref|ZP_06150629.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|268686007|ref|ZP_06152869.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
 gi|293399617|ref|ZP_06643770.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
 gi|268584884|gb|EEZ49560.1| DNA ligase [Neisseria gonorrhoeae PID18]
 gi|268624051|gb|EEZ56451.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|268626291|gb|EEZ58691.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
 gi|291610186|gb|EFF39308.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
          Length = 829

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 594 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 649


>gi|268596277|ref|ZP_06130444.1| DNA ligase [Neisseria gonorrhoeae FA19]
 gi|268603059|ref|ZP_06137226.1| DNA ligase [Neisseria gonorrhoeae PID1]
 gi|291044437|ref|ZP_06570146.1| DNA ligase [Neisseria gonorrhoeae DGI2]
 gi|268550065|gb|EEZ45084.1| DNA ligase [Neisseria gonorrhoeae FA19]
 gi|268587190|gb|EEZ51866.1| DNA ligase [Neisseria gonorrhoeae PID1]
 gi|291011331|gb|EFE03327.1| DNA ligase [Neisseria gonorrhoeae DGI2]
          Length = 829

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 594 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 649


>gi|268594283|ref|ZP_06128450.1| DNA ligase [Neisseria gonorrhoeae 35/02]
 gi|268547672|gb|EEZ43090.1| DNA ligase [Neisseria gonorrhoeae 35/02]
          Length = 827

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 592 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 647


>gi|264680422|ref|YP_003280332.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2]
 gi|262210938|gb|ACY35036.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni CNB-2]
          Length = 191

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603
           R++  +  L +I GIGP     +L   G ++  ++ + S +    L  + GI KK A ++
Sbjct: 67  RERQTFRELIKITGIGPRMALAVLS--GMSIDDLADAVSQQQAGRLVKVPGIGKKTAERL 124

Query: 604 YNHFH 608
                
Sbjct: 125 LLELK 129


>gi|254674127|emb|CBA09911.1| holliday junction DNA helicase [Neisseria meningitidis alpha275]
 gi|325145258|gb|EGC67537.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240013]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L +++GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123


>gi|254673677|emb|CBA09272.1| DNA ligase [Neisseria meningitidis alpha275]
          Length = 414

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 179 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 234


>gi|253997895|ref|YP_003049958.1| DNA protecting protein DprA [Methylovorus sp. SIP3-4]
 gi|253984574|gb|ACT49431.1| DNA protecting protein DprA [Methylovorus sp. SIP3-4]
          Length = 371

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L  + G+G  R   LL+ FG+ + I  +  + L  +  + + +A  I
Sbjct: 16  ALSLVPGLGGQRICQLLKVFGSPEQIFAAPHDALRQV--VPEPVAEAI 61


>gi|240122918|ref|ZP_04735874.1| putative DNA ligase [Neisseria gonorrhoeae PID332]
          Length = 823

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643


>gi|240115079|ref|ZP_04729141.1| putative DNA ligase [Neisseria gonorrhoeae PID18]
 gi|240125172|ref|ZP_04738058.1| putative DNA ligase [Neisseria gonorrhoeae SK-92-679]
 gi|240127627|ref|ZP_04740288.1| putative DNA ligase [Neisseria gonorrhoeae SK-93-1035]
          Length = 823

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643


>gi|240080125|ref|ZP_04724668.1| putative DNA ligase [Neisseria gonorrhoeae FA19]
 gi|240117363|ref|ZP_04731425.1| putative DNA ligase [Neisseria gonorrhoeae PID1]
 gi|260441105|ref|ZP_05794921.1| putative DNA ligase [Neisseria gonorrhoeae DGI2]
          Length = 823

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643


>gi|240015985|ref|ZP_04722525.1| putative DNA ligase [Neisseria gonorrhoeae FA6140]
 gi|240112339|ref|ZP_04726829.1| putative DNA ligase [Neisseria gonorrhoeae MS11]
          Length = 823

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643


>gi|240013546|ref|ZP_04720459.1| putative DNA ligase [Neisseria gonorrhoeae DGI18]
 gi|240120618|ref|ZP_04733580.1| putative DNA ligase [Neisseria gonorrhoeae PID24-1]
          Length = 823

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643


>gi|254493140|ref|ZP_05106311.1| DNA ligase [Neisseria gonorrhoeae 1291]
 gi|268598398|ref|ZP_06132565.1| DNA ligase [Neisseria gonorrhoeae MS11]
 gi|226512180|gb|EEH61525.1| DNA ligase [Neisseria gonorrhoeae 1291]
 gi|268582529|gb|EEZ47205.1| DNA ligase [Neisseria gonorrhoeae MS11]
          Length = 829

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 594 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 649


>gi|221064959|ref|ZP_03541064.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1]
 gi|220709982|gb|EED65350.1| Holliday junction DNA helicase RuvA [Comamonas testosteroni KF-1]
          Length = 191

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603
           R++  +  L +I GIGP     +L   G ++  ++ + S +    L  + GI KK A ++
Sbjct: 67  RERQTFRELIKITGIGPRMALAVLS--GMSIDDLADAVSQQQAGRLVKVPGIGKKTAERL 124

Query: 604 YNHFH 608
                
Sbjct: 125 LLELK 129


>gi|194097948|ref|YP_002000994.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
 gi|239998421|ref|ZP_04718345.1| putative DNA ligase [Neisseria gonorrhoeae 35/02]
 gi|254781380|sp|B4RJQ9|DNLJ_NEIG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|193933238|gb|ACF29062.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
 gi|317163707|gb|ADV07248.1| putative DNA ligase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 823

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643


>gi|121634462|ref|YP_974707.1| DNA ligase [Neisseria meningitidis FAM18]
 gi|166216218|sp|A1KSS7|DNLJ_NEIMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|120866168|emb|CAM09908.1| putative DNA ligase [Neisseria meningitidis FAM18]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|121634135|ref|YP_974380.1| Holliday junction DNA helicase motor protein [Neisseria
           meningitidis FAM18]
 gi|166230574|sp|A1KRU4|RUVA_NEIMF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120865841|emb|CAM09573.1| Holliday junction DNA helicase [Neisseria meningitidis FAM18]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L +++GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123


>gi|59800688|ref|YP_207400.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
 gi|75356380|sp|Q5F9Z9|DNLJ_NEIG1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|59717583|gb|AAW88988.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
          Length = 823

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 588 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 643


>gi|15676564|ref|NP_273708.1| DNA ligase [Neisseria meningitidis MC58]
 gi|161869603|ref|YP_001598770.1| DNA ligase [Neisseria meningitidis 053442]
 gi|304388085|ref|ZP_07370214.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
 gi|81784869|sp|Q9K0E3|DNLJ_NEIMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|190359266|sp|A9M2U7|DNLJ_NEIM0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|7225892|gb|AAF41084.1| DNA ligase [Neisseria meningitidis MC58]
 gi|161595156|gb|ABX72816.1| DNA ligase [Neisseria meningitidis 053442]
 gi|304337942|gb|EFM04082.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
 gi|316983632|gb|EFV62613.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
 gi|325139885|gb|EGC62416.1| DNA ligase, NAD-dependent [Neisseria meningitidis CU385]
 gi|325200648|gb|ADY96103.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|218767787|ref|YP_002342299.1| putative DNA ligase [Neisseria meningitidis Z2491]
 gi|166216217|sp|A1IQR7|DNLJ_NEIMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|121051795|emb|CAM08101.1| putative DNA ligase [Neisseria meningitidis Z2491]
 gi|319410038|emb|CBY90372.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
           meningitidis WUE 2594]
          Length = 841

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|66815705|ref|XP_641869.1| hypothetical protein DDB_G0279107 [Dictyostelium discoideum AX4]
 gi|60469909|gb|EAL67892.1| hypothetical protein DDB_G0279107 [Dictyostelium discoideum AX4]
          Length = 1238

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 556  PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISK----KIACKI 603
            PL EING+   R R L  + F TVK I+ +SPE L     + K     IA  I
Sbjct: 1134 PLVEINGVKQARARALWAAGFKTVKSIALASPEELNKAVKLGKFNSISIAATI 1186


>gi|296329302|ref|ZP_06871803.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153658|gb|EFG94475.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 696

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  IG +  ++L ++   +  +   + E L SIEGI +  A +I   F K  + 
Sbjct: 537 GIPFIGKVASKILAKASKNIDKLMTMTFEELTSIEGIGEIAANEIIAFFTKEKNQ 591


>gi|225420378|ref|ZP_03762681.1| hypothetical protein CLOSTASPAR_06723 [Clostridium asparagiforme
           DSM 15981]
 gi|225040997|gb|EEG51243.1| hypothetical protein CLOSTASPAR_06723 [Clostridium asparagiforme
           DSM 15981]
          Length = 760

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ F   T   I    PE L+ ++GIS+K+A  I
Sbjct: 90  IKGIGAALAARIVRHFKADTF-RIMEEEPERLSEVKGISEKMAMAI 134


>gi|223044126|ref|ZP_03614165.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14]
 gi|222442520|gb|EEE48626.1| holliday junction DNA helicase RuvA [Staphylococcus capitis SK14]
          Length = 200

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  +   + R+        L    GI KK A +I
Sbjct: 68  KDMFHSLIKVTGIGPKSALAILAA-SSPNEVKRAIENENDAYLTQFPGIGKKTARQI 123


>gi|319787968|ref|YP_004147443.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466480|gb|ADV28212.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 326

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IG     +LL  FG++  +  +  + +A
Sbjct: 202 DNIPGVGGIGAKTAAILLSHFGSLDELL-ARVDEVA 236


>gi|313199960|ref|YP_004038618.1| DNA protecting protein dpra [Methylovorus sp. MP688]
 gi|312439276|gb|ADQ83382.1| DNA protecting protein DprA [Methylovorus sp. MP688]
          Length = 371

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L  + G+G  R   LL++FG+ + I  +  + L  +  + + +A  I
Sbjct: 16  ALSLVPGLGGQRLCQLLKAFGSPEQIFAAPHDALRQV--VPEPVAEAI 61


>gi|253578000|ref|ZP_04855272.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850318|gb|EES78276.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 614

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFH 608
            K  YS    I  IG    +++ + F   ++ I  +  E ++SI+ I   IA  + ++F 
Sbjct: 453 AKVIYS--LGIANIGLANAKVICRHFDDDLEKIRHADKEEISSIDTIGPVIAGSLTDYFS 510

Query: 609 KNTSH 613
              ++
Sbjct: 511 NEDNN 515


>gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
 gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
          Length = 1102

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG-ISKKIACKIYNH 606
            I GIGP   + +L  F +++ +  S  +   +I   + K+ A  I  H
Sbjct: 191 GIKGIGPKGAQSILAHFKSLESLYESIEKDYENIVSLLGKRTAGLIKEH 239


>gi|19705038|ref|NP_602533.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|81485410|sp|Q8RI94|DNLJ_FUSNN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|19712952|gb|AAL93832.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 696

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  IG +  ++L ++   +  +   + E L SIEGI +  A +I   F K  + 
Sbjct: 537 GIAEIGKVTSKILAKASKNIDKLMAMTFEDLTSIEGIGEIAANEIIAFFTKEKNQ 591


>gi|310778318|ref|YP_003966651.1| DNA repair protein RadC [Ilyobacter polytropus DSM 2926]
 gi|309747641|gb|ADO82303.1| DNA repair protein RadC [Ilyobacter polytropus DSM 2926]
          Length = 225

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 26/75 (34%)

Query: 544 THRKR-RKKAAY----SPLD----------EINGIGPLRK------RLLLQSFGTVKMIS 582
            HRKR R+K       S LD           I     +RK      + LL+ F T++ + 
Sbjct: 6   GHRKRLREKYIKGGYDSFLDYEKLELLLTYSI-----VRKDVKPVAKELLKRFKTLEGVM 60

Query: 583 RSSPETLASIEGISK 597
           ++  + L  ++G+ +
Sbjct: 61  KAPFDELFKVDGLGE 75


>gi|238918762|ref|YP_002932276.1| hypothetical protein NT01EI_0824 [Edwardsiella ictaluri 93-146]
 gi|259710447|sp|C5BHA5|XNI_EDWI9 RecName: Full=Protein Xni
 gi|238868330|gb|ACR68041.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 253

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           S +  I+GIG      LL+ FG+++ + +     LA + 
Sbjct: 177 SKIPGISGIGAKTAAALLKEFGSLEALYQ----HLAQVP 211


>gi|171914297|ref|ZP_02929767.1| putative exodeoxyribonuclease [Verrucomicrobium spinosum DSM 4136]
          Length = 732

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 560 INGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYN 605
           I+GIGP   + +++ FG+    +I   S   L  +EGI KK   +I +
Sbjct: 105 IDGIGPKYAQRVVEKFGSEVFDIIENYSAR-LEEVEGIGKKRRQEIRD 151


>gi|33519955|ref|NP_878787.1| DNA ligase [Candidatus Blochmannia floridanus]
 gi|81666906|sp|Q7VRU2|DNLJ_BLOFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|33504301|emb|CAD83193.1| DNA ligase [Candidatus Blochmannia floridanus]
          Length = 594

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I G+G      L   + T++ +  +  ++   ++ I K  A  IY+  H++ +
Sbjct: 526 GIPGVGESVSNKLAYMYRTIENLMNADLQSFLQLKFIGKIAAMNIYSFLHQSDN 579


>gi|330992004|ref|ZP_08315953.1| hypothetical protein SXCC_01910 [Gluconacetobacter sp. SXCC-1]
 gi|329761025|gb|EGG77520.1| hypothetical protein SXCC_01910 [Gluconacetobacter sp. SXCC-1]
          Length = 451

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKI 603
           I GIGP+  + L+++FG  + +     +    L  + GI  K A +I
Sbjct: 97  IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERI 141


>gi|327475176|gb|AEA77183.1| holliday junction DNA helicase [Exiguobacterium sp. EPVM]
          Length = 195

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPET--LASIEGISKKI 599
             R RR++  ++ L  +NGIGP     ++ S G +  +  +  +     L    G+ KK 
Sbjct: 60  GFRSRRERELFNKLLGVNGIGPKGALAIVAS-GDMDALIDAIETENEKYLTKFPGVGKKT 118

Query: 600 ACK 602
           A +
Sbjct: 119 AKQ 121


>gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
 gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
          Length = 881

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IG      LL  FG+V+ I     + L 
Sbjct: 194 DNIPGVTKIGEKTAIKLLNQFGSVEGIYE-HLDELK 228


>gi|258513085|ref|YP_003189342.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01]
 gi|256634988|dbj|BAI00963.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01]
 gi|256638043|dbj|BAI04011.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-03]
 gi|256641097|dbj|BAI07058.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-07]
 gi|256644152|dbj|BAI10106.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-22]
 gi|256647207|dbj|BAI13154.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-26]
 gi|256650260|dbj|BAI16200.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-32]
 gi|256653251|dbj|BAI19184.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656304|dbj|BAI22230.1| DNA helicase RecD/TraA [Acetobacter pasteurianus IFO 3283-12]
          Length = 739

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKI 603
           I GIGP+  + L+++FG  + +     +    L  + GI  K A +I
Sbjct: 101 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPHRLREVTGIGPKRAERI 145


>gi|210623126|ref|ZP_03293592.1| hypothetical protein CLOHIR_01542 [Clostridium hiranonis DSM 13275]
 gi|210153803|gb|EEA84809.1| hypothetical protein CLOHIR_01542 [Clostridium hiranonis DSM 13275]
          Length = 356

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ F   + I  +S E L  +EGI +  A  I N  
Sbjct: 304 IENLVKYFDNFQDILTASIEELDEVEGIGEIRATYIRNGL 343


>gi|209543162|ref|YP_002275391.1| helicase, RecD/TraA family [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530839|gb|ACI50776.1| helicase, RecD/TraA family [Gluconacetobacter diazotrophicus PAl 5]
          Length = 728

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKI 603
           I GIGP+  + L+++FG  + +     +    L  + GI  K A +I
Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERI 144


>gi|162148589|ref|YP_001603050.1| exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787166|emb|CAP56758.1| putative exodeoxyribonuclease [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 728

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKI 603
           I GIGP+  + L+++FG  + +     +    L  + GI  K A +I
Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPHRLREVTGIGPKRAERI 144


>gi|162146783|ref|YP_001601244.1| exodeoxyribonuclease V alpha chain [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785360|emb|CAP54908.1| putative exodeoxyribonuclease V alpha chain [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 728

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET---LASIEGISKKIACKI 603
           I GIGP+  + L+++FG  + +     +    L  + GI  K A +I
Sbjct: 100 IRGIGPVYAKKLVKAFG--EAVFDLIEQEPGRLREVTGIGPKRAERI 144


>gi|297619372|ref|YP_003707477.1| DNA repair and recombination protein RadA [Methanococcus voltae A3]
 gi|297378349|gb|ADI36504.1| DNA repair and recombination protein RadA [Methanococcus voltae A3]
          Length = 322

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 557 LDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACK 602
           L ++ G+GP     L +  G       I+ ++   L  IEGIS+K A K
Sbjct: 5   LTDLPGVGPSTAEKLAE--GGYIDFMKIATATVGELTDIEGISEKAAAK 51


>gi|54293931|ref|YP_126346.1| DNA ligase [Legionella pneumophila str. Lens]
 gi|81368949|sp|Q5WXV3|DNLJ_LEGPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53753763|emb|CAH15221.1| DNA ligase [Legionella pneumophila str. Lens]
          Length = 673

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 14/74 (18%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  K   S L++              I  IG    R+L + +  V+ +  ++ E L ++ 
Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVEGLKAATIEELMTLN 553

Query: 594 GISKKIACKIYNHF 607
            I    A  + + F
Sbjct: 554 DIGPVAASHVVHFF 567


>gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
 gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
          Length = 911

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 9/54 (16%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKM-ISRSSPETLASIEGISKKIACKIYNHF 607
           D I G+   GP      LQ +G+++  I  +S   +     I +K+A  I +H 
Sbjct: 188 DNIPGVEGCGPKTAVKWLQKYGSLQGVIDNAS--DIK--GKIGEKLAKAI-DHL 236


>gi|302550272|ref|ZP_07302614.1| 5'-3' exonuclease [Streptomyces viridochromogenes DSM 40736]
 gi|302467890|gb|EFL30983.1| 5'-3' exonuclease [Streptomyces viridochromogenes DSM 40736]
          Length = 301

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           L  + GIG      LL  FG +  I  +  E 
Sbjct: 197 LPGVPGIGEKTAAKLLAEFGDLAGIMAA-VED 227


>gi|284163506|ref|YP_003401785.1| DNA repair and recombination protein RadA [Haloterrigena turkmenica
           DSM 5511]
 gi|284013161|gb|ADB59112.1| DNA repair and recombination protein RadA [Haloterrigena turkmenica
           DSM 5511]
          Length = 343

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L+ + G+GP     L      F + + ++ +SP  L++   + +  A  I   
Sbjct: 6   LETLPGVGPATADKL--HDAGFDSYQSLAVASPSELSNTADVGESTASDIVRA 56


>gi|166235520|gb|ABY85436.1| homing endonuclease [Agaricus bisporus]
          Length = 328

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN 42
           GVY      G   YVG + +L  R+ SY   +
Sbjct: 70  GVYIFKTSTGSC-YVGSSISLYNRVCSYFMPS 100


>gi|157374877|ref|YP_001473477.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
 gi|190359288|sp|A8FU26|DNLJ_SHESH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157317251|gb|ABV36349.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
          Length = 670

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 5/45 (11%), Positives = 15/45 (33%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F  +  +  +  +    ++ +   +A  +   F
Sbjct: 520 VGEATAANLANYFKNLDKLKSADADEFIKVDDVGAIVAQHLTYFF 564


>gi|126700113|ref|YP_001089010.1| putative competence protein [Clostridium difficile 630]
 gi|254976091|ref|ZP_05272563.1| putative competence protein [Clostridium difficile QCD-66c26]
 gi|255307526|ref|ZP_05351697.1| putative competence protein [Clostridium difficile ATCC 43255]
 gi|255315224|ref|ZP_05356807.1| putative competence protein [Clostridium difficile QCD-76w55]
 gi|255517893|ref|ZP_05385569.1| putative competence protein [Clostridium difficile QCD-97b34]
 gi|255651008|ref|ZP_05397910.1| putative competence protein [Clostridium difficile QCD-37x79]
 gi|260684077|ref|YP_003215362.1| putative competence protein [Clostridium difficile CD196]
 gi|260687736|ref|YP_003218870.1| putative competence protein [Clostridium difficile R20291]
 gi|306520874|ref|ZP_07407221.1| putative competence protein [Clostridium difficile QCD-32g58]
 gi|115251550|emb|CAJ69383.1| Competence protein ComEA [Clostridium difficile]
 gi|260210240|emb|CBA64489.1| putative competence protein [Clostridium difficile CD196]
 gi|260213753|emb|CBE05675.1| putative competence protein [Clostridium difficile R20291]
          Length = 234

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LD + G+G      +LQ       F ++        E + ++ GI  K    I +
Sbjct: 182 ELDSLPGVGEATANKILQHREENGQFSSI--------EEIKNVNGIGDKKYENIKD 229


>gi|254303498|ref|ZP_04970856.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323690|gb|EDK88940.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 696

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           K  YS    I  IG +  ++L ++   +  +   + E L SIEGI +  A +I   F+K 
Sbjct: 531 KVIYS--LGIPFIGKVASKVLAKASRNIDKLMTMTFEDLTSIEGIGEIAANEIIAFFNKE 588

Query: 611 TSH 613
            + 
Sbjct: 589 KNQ 591


>gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1]
 gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter sp. ADP1]
          Length = 920

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            + GIG      LL  +G++  I       L +++ I  K+   I +
Sbjct: 187 GVPGIGAKTAAKLLTEYGSIGGI-------LENVDQIKGKVGQNIKD 226


>gi|315645942|ref|ZP_07899063.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Paenibacillus vortex V453]
 gi|315278703|gb|EFU42017.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Paenibacillus vortex V453]
          Length = 222

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 8/49 (16%)

Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACK 602
           L E+ GIG  + + ++     FG  +     S   L +++GI  K+  K
Sbjct: 172 LMELPGIGEAKAQAIIDYRKQFGPFR-----SIADLMNVKGIGPKMLEK 215


>gi|296138332|ref|YP_003645575.1| hypothetical protein Tpau_0598 [Tsukamurella paurometabola DSM
           20162]
 gi|296026466|gb|ADG77236.1| protein of unknown function DUF147 [Tsukamurella paurometabola DSM
           20162]
          Length = 360

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L+ +FG+++ +  +S   L  + GI    A ++    
Sbjct: 310 IEALVAAFGSLQTLLAASAADLQGVPGIGAVWARQVREGL 349


>gi|225012503|ref|ZP_03702939.1| DNA protecting protein DprA [Flavobacteria bacterium MS024-2A]
 gi|225003480|gb|EEG41454.1| DNA protecting protein DprA [Flavobacteria bacterium MS024-2A]
          Length = 365

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           L+ + G+G  R + ++  FG+ + I  +  +   S+EGI +K
Sbjct: 10  LESLPGMGWNRAQRMVTHFGSPEAIFLAKHQDWESVEGIGEK 51


>gi|160878404|ref|YP_001557372.1| RecD/TraA family helicase [Clostridium phytofermentans ISDg]
 gi|160427070|gb|ABX40633.1| helicase, RecD/TraA family [Clostridium phytofermentans ISDg]
          Length = 742

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I G+G      +++ F   T  +I    PE L+ ++GIS K+A +IY  F +
Sbjct: 89  IKGVGTALAARIVRKFKEKTFVIIEE-EPERLSEVKGISDKLAREIYRQFSE 139


>gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413]
 gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413]
          Length = 977

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIAC 601
           D I G   IG      LL ++G++  + ++    L  I+G + KK+A 
Sbjct: 212 DNIPGVRGIGEKTAVQLLSTYGSLDGVYKA----LNEIKGATQKKLAE 255


>gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120]
 gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120]
          Length = 977

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIAC 601
           D I G   IG      LL ++G++  + ++    L  I+G + KK+A 
Sbjct: 212 DNIPGVRGIGEKTAVQLLSTYGSLDGVYKA----LNEIKGATQKKLAE 255


>gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
          Length = 880

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ FGT++ I  ++ + ++      KK    +Y +
Sbjct: 199 GVPGIGKKTALKLLKEFGTMEEIL-ANIDQVS-----GKKRKENLYKY 240


>gi|254805692|ref|YP_003083913.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
 gi|254669234|emb|CBA08082.1| holliday junction DNA helicase [Neisseria meningitidis alpha14]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 15/93 (16%)

Query: 519 VLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQ 573
            L      +    +  +R++AH    FA    RK      +  L +++GIG      +L 
Sbjct: 37  NLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGILS 91

Query: 574 SFGTVKMISRSSPET----LASIEGISKKIACK 602
           +  T   ++R+  E     L+S  GI KK A +
Sbjct: 92  AM-TADELARAVAEEDVKRLSSAPGIGKKTAER 123


>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
 gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  +G+V+ +     E +  + G       K+  +  +N    
Sbjct: 191 GVPGVGEKTALKLLHEYGSVEQV----LENIDKVSG------KKLQENLRENVDKA 236


>gi|226325746|ref|ZP_03801264.1| hypothetical protein COPCOM_03559 [Coprococcus comes ATCC 27758]
 gi|225205870|gb|EEG88224.1| hypothetical protein COPCOM_03559 [Coprococcus comes ATCC 27758]
          Length = 165

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           I GIGP     + + FG  T++ I   +P+ L  I GIS+K    I   + K      T
Sbjct: 101 IKGIGPKMADTIFRKFGLQTLE-IMEKNPQELLKIRGISEKKLAAIVESYGKKPGVPGT 158


>gi|158522683|ref|YP_001530553.1| RecD/TraA family helicase [Desulfococcus oleovorans Hxd3]
 gi|158511509|gb|ABW68476.1| helicase, RecD/TraA family [Desulfococcus oleovorans Hxd3]
          Length = 736

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +    S L  + G+G    R + + FG  T  +I    PE LA + GI    A  I N +
Sbjct: 82  QNYLQSGL--VQGVGTAMARKITRHFGKETFSVIEN-QPERLAEVPGIGAATALMIRNAW 138

Query: 608 HKN 610
            ++
Sbjct: 139 REH 141


>gi|145295383|ref|YP_001138204.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum R]
 gi|166215581|sp|A4QDK5|DNLJ_CORGB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|140845303|dbj|BAF54302.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 680

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L        I  +GP   R L   + +++ +  +  E L+  +G+   IA   
Sbjct: 508 QKSKQTDLWRVLVALSIRHVGPTAARALAGRYHSIQALIDAPLEELSETDGVGTIIAQSF 567

Query: 604 YNHF 607
            + F
Sbjct: 568 KDWF 571


>gi|19552465|ref|NP_600467.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC
           13032]
 gi|62390131|ref|YP_225533.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC
           13032]
 gi|81760918|sp|Q8NR20|DNLJ_CORGL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|21324011|dbj|BAB98637.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325467|emb|CAF19947.1| DNA LIGASE [Corynebacterium glutamicum ATCC 13032]
          Length = 680

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L        I  +GP   R L   + +++ +  +  E L+  +G+   IA   
Sbjct: 508 QKSKQTDLWRVLVALSIRHVGPTAARALAGRYHSIQALIDAPLEELSETDGVGTIIAQSF 567

Query: 604 YNHF 607
            + F
Sbjct: 568 KDWF 571


>gi|311029021|ref|ZP_07707111.1| DNA integrity scanning protein DisA [Bacillus sp. m3-13]
          Length = 357

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L +I  + PL    L+  F  +K I  ++ E L  ++GI +  A KI     +
Sbjct: 293 VLHKIPRLPPLVIENLVCRFWNLKQILNATVEELDDVDGIGEVRARKIKEGLKR 346


>gi|269926773|ref|YP_003323396.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790433|gb|ACZ42574.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 14/59 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLL----QS--FGTVKMISRSSPETLASIEGISKKIACKIY 604
           A    L+E+ GIGP +   ++    +   F ++        E L  + GI       I 
Sbjct: 150 ATKEQLEELPGIGPSKAAAIIEFRQKHGPFNSL--------EDLLDVPGIGPSTLENIK 200


>gi|239832168|ref|ZP_04680497.1| DNA repair protein RadC [Ochrobactrum intermedium LMG 3301]
 gi|239824435|gb|EEQ96003.1| DNA repair protein RadC [Ochrobactrum intermedium LMG 3301]
          Length = 249

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 18/36 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + LL  FG++  +  +  + +A + G    +A ++ 
Sbjct: 73  KALLTRFGSIAEVLAAPEKLIAEVPGAGPTVAHELK 108


>gi|229543680|ref|ZP_04432740.1| DNA repair protein RadC [Bacillus coagulans 36D1]
 gi|229328100|gb|EEN93775.1| DNA repair protein RadC [Bacillus coagulans 36D1]
          Length = 227

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ F  ++ +  +S E + SI+GI    A +I    
Sbjct: 52  RLIRHFEGLRFLKDASLEEMTSIKGIGTAKAVQILAAI 89


>gi|73959081|ref|XP_536967.2| PREDICTED: similar to excision repair cross-complementing rodent
           repair deficiency, complementation group 4 [Canis
           familiaris]
          Length = 917

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L  + G +   A ++Y+  H + + 
Sbjct: 853 LLKMPGVNAKNCRALMHHVKNIAELASLSQDQLVGVLG-NAGNAKQLYDFIHTSYAE 908


>gi|319941758|ref|ZP_08016080.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis
           3_1_45B]
 gi|319804691|gb|EFW01558.1| Holliday junction DNA helicase RuvA [Sutterella wadsworthensis
           3_1_45B]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603
           +A +  L +I+G+GP     LL   G TV  +  +        L  + GI KK A ++
Sbjct: 69  RAVFRALIKISGVGPKIALALLS--GITVDQLKDAVDRGETGLLTKVPGIGKKTAERL 124


>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
 gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
          Length = 921

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL--ASIEGISKKIACKIY 604
           D I G   +G    + LL  FG+++ +  ++ + L  A  + + +  A +I+
Sbjct: 188 DNIPGCPGVGEKTAQKLLTEFGSIENLL-ANTDKLKGAQKKKVEEN-AEQIH 237


>gi|269468816|gb|EEZ80420.1| Holliday junction resolvasome, DNA-binding subunit [uncultured
           SUP05 cluster bacterium]
          Length = 195

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L  +NGIGP     +L     V  +  +        LA   GI KK A K+
Sbjct: 68  KILFRELIRVNGIGPKVALAILSHL-NVASLMNAVANEDDALLAKTPGIGKKTAQKL 123


>gi|239906503|ref|YP_002953244.1| helicase RecD/TraA family protein [Desulfovibrio magneticus RS-1]
 gi|239796369|dbj|BAH75358.1| helicase RecD/TraA family protein [Desulfovibrio magneticus RS-1]
          Length = 725

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598
           K   S L  I GIGP+  + +++ FG  T+ +I  +  + L  + GI  K
Sbjct: 90  KYLGSGL--IKGIGPVMAKRIVKLFGEATLDVI-EADIQKLIEVPGIGSK 136


>gi|15613896|ref|NP_242199.1| late competence operon required for DNA binding and uptake
           [Bacillus halodurans C-125]
 gi|10173949|dbj|BAB05052.1| late competence operon required for DNA binding and uptake
           [Bacillus halodurans C-125]
          Length = 210

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPETLASIEGISKKIACKIYNHFH 608
           +A    L  + GIGP +   ++    + +    +  S E L ++ GI +K   K+  +  
Sbjct: 153 RATEVELQSLPGIGPAKATAII----SYREEHGAFSSLEELMNVSGIGEKSYEKLAPYLR 208

Query: 609 KN 610
            N
Sbjct: 209 LN 210


>gi|312880597|ref|ZP_07740397.1| helicase, RecD/TraA family [Aminomonas paucivorans DSM 12260]
 gi|310783888|gb|EFQ24286.1| helicase, RecD/TraA family [Aminomonas paucivorans DSM 12260]
          Length = 738

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLAS-IEGIS 596
           R A   HR+RR    +  L + +GIG      +++ +G   + + R++P  LA  +EGI 
Sbjct: 146 RLAWEAHRQRRGVLLF--LHD-HGIGAATANRIVRRYGDEAERVVRANPYQLAEDVEGIG 202

Query: 597 KKIACKI 603
              A +I
Sbjct: 203 FATADRI 209


>gi|207092382|ref|ZP_03240169.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 183

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRS 584
           L  +Q +R++AH   +    +  +K  +  L +ING+G      +L SF     + I  +
Sbjct: 46  LKILQVIREDAH--LLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENII-A 102

Query: 585 SPE--TLASIEGISKKIACKI 603
           + E   L  + GI KK+A KI
Sbjct: 103 TKEVKRLQQVPGIGKKLADKI 123


>gi|300390220|gb|ADK10922.1| ComEA [Thermoanaerobacterium saccharolyticum]
          Length = 204

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 552 AAYSPLDEINGIGPLRKRLLL----QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    LD + GIG +  + ++    Q  G  + I     E + ++  I  K+  +I +
Sbjct: 148 ATKEELDTLPGIGEVTAQRIIDFREQH-GNFQKI-----EDIMNVSRIGPKLFEQIKD 199


>gi|295103817|emb|CBL01361.1| GIY-YIG catalytic domain. [Faecalibacterium prausnitzii SL3/3]
          Length = 141

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 18/107 (16%)

Query: 1   MSSEQMPECPGVYQMLDIA---GRVL------YVGKAYNLQKRIKSYMHSNN--HTHRIT 49
           +  + +P+  GVY +        +++      Y+G++ N+  RI  +    +     +  
Sbjct: 16  LDKDDLPKKSGVYLVYAGKPVSDKIVSLRKLFYIGESSNIHDRIVEHNRDKDWKDGLKEG 75

Query: 50  HMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSFPY 96
            ++     +       + E LL EA +I   KP +N    D  ++P+
Sbjct: 76  ELLYYAYAL-----APKDERLLEEAALIYYYKPPYNTEYVD--NYPF 115


>gi|224436530|ref|ZP_03657539.1| Holliday junction DNA helicase RuvA [Helicobacter cinaedi CCUG
           18818]
 gi|313143033|ref|ZP_07805226.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           cinaedi CCUG 18818]
 gi|313128064|gb|EFR45681.1| holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           cinaedi CCUG 18818]
          Length = 195

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQ-----SFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L +ING+GP     +L       F   K+IS    + L  + GI  K A KI
Sbjct: 70  KQTFERLIKINGVGPKVALAILSTYTPMEF--AKIISNKDVDALKKVPGIGAKGAGKI 125


>gi|138895891|ref|YP_001126344.1| hypothetical protein GTNG_2250 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267404|gb|ABO67599.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 396

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PL+ I G+G      LL  FGT ++++   + E +A   G  +K+A  I
Sbjct: 326 PLEFIPGLGLKSYEKLLSRFGTEMRVLHEVTEEEIAETVG--QKLARLI 372


>gi|323703616|ref|ZP_08115260.1| DNA repair protein RadC [Desulfotomaculum nigrificans DSM 574]
 gi|323531449|gb|EGB21344.1| DNA repair protein RadC [Desulfotomaculum nigrificans DSM 574]
          Length = 227

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 21/37 (56%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           ++  F  ++ +++++ E L++I+GI    A ++    
Sbjct: 53  IIGRFKDLRALAQATVEELSAIKGIGPVKAVQVKAAL 89


>gi|319638704|ref|ZP_07993464.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Neisseria mucosa C102]
 gi|317400088|gb|EFV80749.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Neisseria mucosa C102]
          Length = 95

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + +++       F +V        E L +++GI   +  K+  
Sbjct: 30  ELEALPGIGPAKAKAIVEYRQKNGAFKSV--------EELKNVKGIGDAVLNKLKA 77


>gi|261380534|ref|ZP_05985107.1| DNA topoisomerase [Neisseria subflava NJ9703]
 gi|284796498|gb|EFC51845.1| DNA topoisomerase [Neisseria subflava NJ9703]
          Length = 95

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + +++       F +V        E L +++GI   +  K+  
Sbjct: 30  ELEALPGIGPAKAKAIVEYRQKNGAFKSV--------EELKNVKGIGDAVLNKLKA 77


>gi|317050124|ref|YP_004117772.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b]
 gi|316951741|gb|ADU71216.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b]
          Length = 589

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMI---SRSSPETLASIEGISKKIACKIYNHFHK 609
            S LD I+GI     + LL S GT+  +      +PE +A + GIS   A +I++ F++
Sbjct: 425 KSVLD-ISGIQRSTWQRLLDS-GTISHLFSWLALTPEQIAQVAGISPARAQQIWHRFNQ 481


>gi|290791409|gb|EFD95068.1| hypothetical protein GL50803_10677 [Giardia lamblia ATCC 50803]
          Length = 195

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           G+   + R L + F T++ I  SS + +AS+ G S++ A  +    
Sbjct: 145 GLSKPKIRSLCEHFKTLRDICMSSVKEIASLPGFSEETAATLLRRL 190


>gi|309378930|emb|CBX22517.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 99

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + LA ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLAKVKGIGPAVLAKLRD 77


>gi|170290966|ref|YP_001737782.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170175046|gb|ACB08099.1| DEAD/DEAH box helicase domain protein [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 695

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 561 NGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            G+G +R +LL ++ + TV+ I+ + PE L  I GI K+++ ++ +
Sbjct: 637 KGVGRVRAKLLYEAGYRTVRDIAEAEPEQLERIVGIGKQLSRELVD 682


>gi|325959641|ref|YP_004291107.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
           sp. AL-21]
 gi|325331073|gb|ADZ10135.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21]
          Length = 690

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G  R R +++ FG    +   +PE L  I+GI  K A  I   F
Sbjct: 645 LGRKRARAVVKVFG--DDLKHVTPEKLTRIDGIGPKTAEAIIAKF 687


>gi|95930424|ref|ZP_01313160.1| Competence protein ComEA helix-hairpin-helix region [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133464|gb|EAT15127.1| Competence protein ComEA helix-hairpin-helix region [Desulfuromonas
           acetoxidans DSM 684]
          Length = 89

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           GT   I+ ++ E L S+ GI +K A KI  +
Sbjct: 25  GTAVNINTATVEQLQSVNGIGQKTAEKIVAY 55


>gi|322392021|ref|ZP_08065484.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780]
 gi|321145119|gb|EFX40517.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780]
          Length = 652

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 29/49 (59%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    +LL+Q F +++ ++++ PE +++IE +   IA  +  +F
Sbjct: 502 GIRHVGSKASKLLVQHFHSIETLAQADPEEVSNIETLGSVIAKSLQTYF 550


>gi|307609752|emb|CBW99264.1| DNA ligase [Legionella pneumophila 130b]
          Length = 650

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 14/74 (18%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  K   S L++              I  IG +  R+L + +  V+ +  ++ E L ++ 
Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEVGARVLAEHYCDVEGLKAATIEELMTLN 553

Query: 594 GISKKIACKIYNHF 607
            I    A  + + F
Sbjct: 554 DIGPVAASHVVHFF 567


>gi|317132479|ref|YP_004091793.1| DNA repair protein RadC [Ethanoligenens harbinense YUAN-3]
 gi|315470458|gb|ADU27062.1| DNA repair protein RadC [Ethanoligenens harbinense YUAN-3]
          Length = 242

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 570 LLLQSFG-TVKMISRSSPETLASIEGISKKIA 600
            LL +FG ++  +  +  E L  + GI +  A
Sbjct: 53  RLLDAFGGSLSSVFDAPLEELQKVPGIGQNTA 84


>gi|269926190|ref|YP_003322813.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789850|gb|ACZ41991.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 584

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 556 PLDEINGIGPLRKRLLLQSF--GTVKMISRSSPET--LASIEGISKKIACKIYNHFH 608
            L ++  +GP R +LL      G++  +  +  E   +  ++G+  K   +I     
Sbjct: 103 ELLQVPDLGPKRVKLLWGELKVGSLDALELA-IEDGRIYKVKGLGPKAIERIIEGLK 158


>gi|254292990|ref|YP_003059013.1| DNA repair protein RadC [Hirschia baltica ATCC 49814]
 gi|254041521|gb|ACT58316.1| DNA repair protein RadC [Hirschia baltica ATCC 49814]
          Length = 272

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + L+  FG +  +  +  + L  ++GI +  A  I
Sbjct: 96  KALIDKFGGISGVMAAPIKRLKEVDGIGETCATYI 130


>gi|189465636|ref|ZP_03014421.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM
           17393]
 gi|189437910|gb|EDV06895.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM
           17393]
          Length = 665

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF  ++ +  +  E L +I+ I +KIA  I ++F
Sbjct: 515 VGETVAKKIAKSFTDIEELENADLERLINIDEIGEKIAQSIISYF 559


>gi|154499911|ref|ZP_02037949.1| hypothetical protein BACCAP_03568 [Bacteroides capillosus ATCC
           29799]
 gi|150271509|gb|EDM98766.1| hypothetical protein BACCAP_03568 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 20/30 (66%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600
           LL  FG+++ +  + PE L+ ++G+ ++ A
Sbjct: 55  LLDRFGSLQGVLDAPPEALSQVKGVGERAA 84


>gi|149912934|ref|ZP_01901468.1| DNA repair protein RadC [Roseobacter sp. AzwK-3b]
 gi|149813340|gb|EDM73166.1| DNA repair protein RadC [Roseobacter sp. AzwK-3b]
          Length = 254

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 35/88 (39%)

Query: 533 LRDEAHRFAITTHRKRRKKAAYS---------PLDE------INGIGPLRK------RLL 571
           +RD         HRKR +    S          L E      I      R+      R L
Sbjct: 35  IRD---------HRKRLRDRFLSGGAAAMPDYELLELVLFRAIP-----RRDVKPLARQL 80

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKI 599
           L  FG    +  +S   L  + GI   +
Sbjct: 81  LDRFGDFNAVISASAAQLTEVPGIGDAV 108


>gi|158522359|ref|YP_001530229.1| RecD/TraA family helicase [Desulfococcus oleovorans Hxd3]
 gi|158511185|gb|ABW68152.1| helicase, RecD/TraA family [Desulfococcus oleovorans Hxd3]
          Length = 722

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598
           I GIGP+    + + FG  T++ +  +    LA + GI KK
Sbjct: 91  IKGIGPVTAERITKKFGKKTLQ-VLETDISRLAKVPGIGKK 130


>gi|159899035|ref|YP_001545282.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC
           23779]
 gi|229560066|sp|A9AZL0|RUVA_HERA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|159892074|gb|ABX05154.1| Holliday junction DNA helicase RuvA [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 197

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 21/66 (31%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL------------ASIEGISK 597
           ++A +  L  ++GIGP     LL         S ++PE L            + + GI K
Sbjct: 68  QRALFELLLGVSGIGPKVALALL---------SAATPEELQHAIAREDITMLSKVPGIGK 118

Query: 598 KIACKI 603
           K A ++
Sbjct: 119 KTAARL 124


>gi|88800180|ref|ZP_01115748.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297]
 gi|88777026|gb|EAR08233.1| Holliday junction DNA helicase motor protein [Reinekea sp. MED297]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 15/79 (18%)

Query: 533 LRDEAH---RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRS 584
           +R++AH    FA      ++++  +  L +I+G+GP     +L       F  ++ I   
Sbjct: 53  IREDAHVLYGFA-----TQKERTLFRTLIKISGVGPKLALAILSGMETNRF--IQSIQDQ 105

Query: 585 SPETLASIEGISKKIACKI 603
            P  L  I G+ KK A ++
Sbjct: 106 DPGALVKIPGVGKKTAERL 124


>gi|330960233|gb|EGH60493.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 787

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  I  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDIGLEVAHEIHSFF 583



 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I  +GP   + L + FGT++ +  +    +     + +K A  + + F
Sbjct: 628 IPSVGPGAAQKLAEKFGTLEAVISADWLDMRQA--LPEKQAKSVRDFF 673


>gi|307132282|ref|YP_003884298.1| DNA polymerase IV [Dickeya dadantii 3937]
 gi|306529811|gb|ADM99741.1| DNA polymerase IV [Dickeya dadantii 3937]
          Length = 352

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL++I G+G +  +                    LL+ FG    I           + SP
Sbjct: 177 PLEKIPGVGKVTAKRLAECGLHTCADVRRYALTELLREFGKFGRILWERCHGIDERQVSP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  I++ 
Sbjct: 237 DRLRKSVGVEKTLAQDIHDW 256


>gi|224539983|ref|ZP_03680522.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518409|gb|EEF87514.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 694

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF  ++ +  +  E L +I+ I +KIA  I ++F
Sbjct: 544 VGETVAKKIAKSFTDIEELENADLERLINIDEIGEKIAQSIISYF 588


>gi|70729275|ref|YP_259012.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf-5]
 gi|123734866|sp|Q4KFH1|DNLJ_PSEF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|68343574|gb|AAY91180.1| DNA ligase, NAD-dependent [Pseudomonas fluorescens Pf-5]
          Length = 788

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 557 LD--EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           LD   I  +GP   + L   FG+++ +  +    +     + +K A  +   F
Sbjct: 625 LDKLNIPSVGPGAAQKLADKFGSLQGVIEADWLDMRQA--LPEKQAKAVREFF 675



 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S G+++ + ++ P+ L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFF 583


>gi|304314106|ref|YP_003849253.1| DNA mismatch recognition protein MutS [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587565|gb|ADL57940.1| predicted DNA mismatch recognition protein MutS
           [Methanothermobacter marburgensis str. Marburg]
          Length = 642

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 551 KAAYSP---LDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKI 603
           K+  S    L +++GIG    + ++   G     +K +     + +ASIEGIS++ A +I
Sbjct: 3   KSMNSVGEALTDVSGIGERLAQKIIDELGGEKELLKAVENLEIDRIASIEGISQRKAIEI 62


>gi|126659779|ref|ZP_01730906.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
 gi|126618931|gb|EAZ89673.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
          Length = 677

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 27/45 (60%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G +   LL ++F ++  +S++S  +L S+ G+  +IA  I + F
Sbjct: 523 VGSVTANLLTENFLSIDQLSQASFTSLCSVYGVGGEIAQSIIDWF 567


>gi|226311452|ref|YP_002771346.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
 gi|254766947|sp|C0ZAN3|RUVA_BREBN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|226094400|dbj|BAH42842.1| Holliday junction ATP-dependent DNA helicase [Brevibacillus brevis
           NBRC 100599]
          Length = 205

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 35/82 (42%)

Query: 534 RDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL---- 589
           RDE              +  +  L +++GIGP          G + +++ ++PE L    
Sbjct: 65  RDE--------------RDLFRKLLDVSGIGPK---------GGLAILAAATPEQLVMAV 101

Query: 590 --------ASIEGISKKIACKI 603
                       GI KK A +I
Sbjct: 102 QQENVTYLTKFPGIGKKTAQRI 123


>gi|225175210|ref|ZP_03729206.1| protein of unknown function DUF147 [Dethiobacter alkaliphilus AHT
           1]
 gi|225169386|gb|EEG78184.1| protein of unknown function DUF147 [Dethiobacter alkaliphilus AHT
           1]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 10/57 (17%)

Query: 556 PLDEINGIGPLR-----KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LD+I      R        L++ FGT++ + R+  E L  +EGI +  A  I +  
Sbjct: 292 ILDKIP-----RLPMPVIENLVEQFGTLQGVLRAGEEVLDEVEGIGEARARNIRSGL 343


>gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1]
 gi|737486|prf||1922368A DNA polymerase I
          Length = 921

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRS 584
           D I G   IGP     LLQ +GT++ +  +
Sbjct: 191 DNIPGAKGIGPKTAAKLLQEYGTLEKVYEA 220


>gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1]
 gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I
 gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1]
          Length = 956

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRS 584
           D I G   IGP     LLQ +GT++ +  +
Sbjct: 226 DNIPGAKGIGPKTAAKLLQEYGTLEKVYEA 255


>gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 880

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F +V+ +   S + ++      KK+  K+   
Sbjct: 194 GVPGVGEKTAIKLLKQFDSVEKLLE-SIDEVS-----GKKLKEKLEEF 235


>gi|238021644|ref|ZP_04602070.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147]
 gi|237866258|gb|EEP67300.1| hypothetical protein GCWU000324_01546 [Kingella oralis ATCC 51147]
          Length = 195

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACK 602
           +A +  L +++GIG      +L +F +   ++ +      + L++  GI KK A +
Sbjct: 69  RATFRQLVKVSGIGAKTALGILSAF-SADELAAAIAQEDIKRLSAAPGIGKKTAER 123


>gi|312213571|emb|CBX90000.1| hypothetical protein [Leptosphaeria maculans]
          Length = 172

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI------NNIRFTV 62
             G+Y + +     +YVG++ +L+KR   Y   +    R   +IS+       +N   T+
Sbjct: 52  KAGIYMLTNKLTCDIYVGQSIDLRKRFMKYFSLSYINSRKELIISRALIKYGYSNFSVTI 111

Query: 63  TC--TEVEALLLEANMIKRLKPRFNIL 87
                E +  + E     +L P++NI 
Sbjct: 112 LEYCNESDLDVKEQYYFDKLNPQYNIQ 138


>gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 875

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++SI+
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQISSIK 223


>gi|212638555|ref|YP_002315075.1| Holliday junction DNA helicase RuvA [Anoxybacillus flavithermus
           WK1]
 gi|226725432|sp|B7GFM6|RUVA_ANOFW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|212560035|gb|ACJ33090.1| Holliday junction resolvasome, DNA-binding subunit [Anoxybacillus
           flavithermus WK1]
          Length = 197

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 510 FFVKKGEALVLNMRDP-ILYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRK 568
            F     +  +N +   ++Y  Q +R++    A+     R+++  ++ L +++GIGP   
Sbjct: 28  IFTPNPFSFQMNKQQQIVVYTYQYVREDV--LALYGFHTRQERMLFAKLLQVSGIGPKGA 85

Query: 569 RLLLQSFGTVKMISRSSPET----LASIEGISKKIACK 602
             +L + G ++ +  +        L    G+ KK A +
Sbjct: 86  LAILAA-GQLEQLVEAIEAENDQFLCKFPGVGKKTARQ 122


>gi|317132010|ref|YP_004091324.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
 gi|315469989|gb|ADU26593.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
          Length = 661

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G     L+   FG+++ +  ++ + L +I+ I   IA  +   F
Sbjct: 508 VGQKAAGLIAARFGSMERLFSATEDELCAIDEIGGIIAENVVRFF 552


>gi|171742868|ref|ZP_02918675.1| hypothetical protein BIFDEN_01984 [Bifidobacterium dentium ATCC
           27678]
 gi|283456105|ref|YP_003360669.1| COME operon protein 1 [Bifidobacterium dentium Bd1]
 gi|171278482|gb|EDT46143.1| hypothetical protein BIFDEN_01984 [Bifidobacterium dentium ATCC
           27678]
 gi|283102739|gb|ADB09845.1| COME operon protein 1 [Bifidobacterium dentium Bd1]
          Length = 131

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 9/50 (18%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGI-SKKIAC 601
            L  + GIGP+  + +L     FG    +     + L  ++GI SK +A 
Sbjct: 79  ELQTLEGIGPVTAQRILDYRMQFGRFDNV-----DQLMEVKGIGSKTLAK 123


>gi|167769926|ref|ZP_02441979.1| hypothetical protein ANACOL_01267 [Anaerotruncus colihominis DSM
           17241]
 gi|167667917|gb|EDS12047.1| hypothetical protein ANACOL_01267 [Anaerotruncus colihominis DSM
           17241]
          Length = 753

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + G+GP   R L+++FG  T+  +   +P  LA I+GIS K A +I N + K
Sbjct: 106 VKGVGPAIARRLVRAFGDDTLT-VMEQNPAKLAEIQGISPKKAEQISNEYKK 156


>gi|111226523|ref|XP_001134548.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
 gi|90970627|gb|EAS66865.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
          Length = 843

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRS-SPETLASIEGISKKIACKIYN 605
           + +   S L    I GIG    ++L + F ++  +  S S E++    G+ ++ +  I+N
Sbjct: 656 KSRGLASLLCAIGIPGIGSSNSKILSEKFQSLDNLINSPSIESIELQSGLGRQTSESIFN 715

Query: 606 HFHK 609
            F+ 
Sbjct: 716 FFNP 719


>gi|55821538|ref|YP_139980.1| late competence protein required for DNA binding and uptake
           [Streptococcus thermophilus LMG 18311]
 gi|55823466|ref|YP_141907.1| late competence protein required for DNA binding and uptake
           [Streptococcus thermophilus CNRZ1066]
 gi|55737523|gb|AAV61165.1| late competence protein required for DNA binding and uptake
           [Streptococcus thermophilus LMG 18311]
 gi|55739451|gb|AAV63092.1| late competence protein required for DNA binding and uptake
           [Streptococcus thermophilus CNRZ1066]
          Length = 231

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L  I+GIG  R   ++      G  +     S + L ++ GI  K   KI    
Sbjct: 175 ATSEQLQTISGIGAKRAEDIIAYRESHGGFQ-----SVDDLKNVSGIGDKTLDKIRESL 228


>gi|313202065|ref|YP_004040723.1| holliday junction DNA helicase ruva [Methylovorus sp. MP688]
 gi|312441381|gb|ADQ85487.1| Holliday junction DNA helicase RuvA [Methylovorus sp. MP688]
          Length = 192

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603
           R++  +  L ++NGIG      +L   G +V  ++++ + +    L  + GI KK A ++
Sbjct: 67  RERQTFRQLLKVNGIGAKSALSILS--GLSVDDLAQAVALQETALLTRVPGIGKKTAERL 124

Query: 604 YNHFH 608
                
Sbjct: 125 LLELK 129


>gi|322437324|ref|YP_004219536.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9]
 gi|321165051|gb|ADW70756.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX9]
          Length = 196

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM------ISRSSPETLASIEGISKKIAC 601
           R++K+ +  L  I GIGP     +L     +        I     +TL  I GI KK A 
Sbjct: 66  RQEKSLFEKLLTITGIGPKLAITVLS---GIAADRLVTAIRGGDHDTLVKIPGIGKKTAE 122

Query: 602 KIYNHFHKNTSHTPT 616
           ++            T
Sbjct: 123 RVVLELKDKLDDMAT 137


>gi|254000106|ref|YP_003052169.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4]
 gi|253986785|gb|ACT51642.1| Holliday junction DNA helicase RuvA [Methylovorus sp. SIP3-4]
          Length = 192

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKI 603
           R++  +  L ++NGIG      +L   G +V  ++++ + +    L  + GI KK A ++
Sbjct: 67  RERQTFRQLLKVNGIGAKSALSILS--GLSVDDLAQAVALQETALLTRVPGIGKKTAERL 124

Query: 604 YNHFH 608
                
Sbjct: 125 LLELK 129


>gi|241663908|ref|YP_002982268.1| DNA repair protein RadC [Ralstonia pickettii 12D]
 gi|240865935|gb|ACS63596.1| DNA repair protein RadC [Ralstonia pickettii 12D]
          Length = 224

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R LL  FG++  +  +S +  +SI G+        Y   H
Sbjct: 48  RELLTHFGSLARLCHASQQEFSSINGMGPAK----YAQLH 83


>gi|157376443|ref|YP_001475043.1| exonuclease IX [Shewanella sediminis HAW-EB3]
 gi|189030098|sp|A8FYJ2|XNI_SHESH RecName: Full=Protein Xni
 gi|157318817|gb|ABV37915.1| 5'-3' exonuclease [Shewanella sediminis HAW-EB3]
          Length = 255

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + GIGP     LL++F ++  I  +S +       I  K A K+
Sbjct: 182 GVPGIGPKSAIELLRTFRSLANIY-ASLD------KIGAKQAKKL 219


>gi|302037359|ref|YP_003797681.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
 gi|300605423|emb|CBK41756.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
          Length = 675

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 549 RKKAAYSPLD------EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
           R K+    LD       I  +G    R+L + FGT+  +  ++ E L  +  I  +I+  
Sbjct: 506 RSKSV--SLDRLLMGLGIRQVGQHIARVLAKQFGTLSKLMSATQEDLLQVREIGPEISAS 563

Query: 603 IYNHFHKNTSHT 614
           + + F +  +  
Sbjct: 564 LTSFFSEERNRA 575


>gi|298676088|ref|YP_003727838.1| DNA mismatch repair protein MutS domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298289076|gb|ADI75042.1| DNA mismatch repair protein MutS domain protein [Methanohalobium
           evestigatum Z-7303]
          Length = 696

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIA 600
            L ++  IG    +  +  FG+    +  I      +++ IEGI +K A
Sbjct: 3   SLQDVPRIGDKTAQRFIGHFGSEEAALNAILNGDIASISEIEGIGQKFA 51


>gi|239907719|ref|YP_002954460.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1]
 gi|259495640|sp|C4XIJ9|RUVA_DESMR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239797585|dbj|BAH76574.1| holliday junction DNA helicase RuvA [Desulfovibrio magneticus RS-1]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR--SS--PETLASIEGISKKIACKIY 604
           +  +  L  I+ +GP     +L  F T   + R  +S   E L  + GI KK A +I+
Sbjct: 70  RETFRTLIGISKLGPRTALAILSHF-TADDLLRVVASGDAEALVRVPGIGKKSAQRIF 126


>gi|94676849|ref|YP_588544.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|123260587|sp|Q1LU20|DNLJ_BAUCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|94219999|gb|ABF14158.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 671

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           IG  +   L   +  +  +  +  E+L  I+ I   +A  + N FH 
Sbjct: 522 IGETKAAYLADYYKHIDALMAADIESLTKIQDIGIIVATNVLNFFHN 568


>gi|89099000|ref|ZP_01171880.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL
           B-14911]
 gi|89086404|gb|EAR65525.1| Holliday junction DNA helicase motor protein [Bacillus sp. NRRL
           B-14911]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 540 FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGI 595
           FA+     R +K  ++ L  ++GIGP     +L S G    + ++  +     L    G+
Sbjct: 57  FALYGFHSREEKMLFTKLLNVSGIGPKGALAILAS-GEPAQVVQAIEDEDEAFLVKFPGV 115

Query: 596 SKKIACK 602
            KK A +
Sbjct: 116 GKKTARQ 122


>gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5]
 gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5]
          Length = 880

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F +V+ +   S + ++      KK+  K+   
Sbjct: 194 GVPGVGEKTAIKLLKQFDSVEKLLE-SIDEVS-----GKKLKEKLEEF 235


>gi|303240177|ref|ZP_07326697.1| helicase, RecD/TraA family [Acetivibrio cellulolyticus CD2]
 gi|302592268|gb|EFL61996.1| helicase, RecD/TraA family [Acetivibrio cellulolyticus CD2]
          Length = 736

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +   S L  I G+GP   + +++ FG  T+  I    PE L+ I+GI+ + A +I   F+
Sbjct: 81  RYLASGL--IKGVGPASAKKIVKKFGEDTI-NIIEFHPEKLSEIKGINHEKALRIGQAFY 137

Query: 609 K 609
           +
Sbjct: 138 E 138


>gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
          Length = 880

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F +V+ +   S + ++      KK+  K+   
Sbjct: 194 GVPGVGEKTAIKLLKQFDSVEKLLE-SIDEVS-----GKKLKEKLEEF 235


>gi|283797409|ref|ZP_06346562.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1]
 gi|291074764|gb|EFE12128.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1]
 gi|295090074|emb|CBK76181.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10]
          Length = 684

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + GIG    ++L + F      +  +  E L +++GI + +A      F    ++ 
Sbjct: 522 GVAGIGLANAKMLCRHFQYDFHAMRCAGKEELTAVDGIGEVLADAWIQFFADEKNNQ 578


>gi|331002346|ref|ZP_08325864.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330410162|gb|EGG89596.1| Holliday junction DNA helicase RuvA [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 196

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 509 KFFVKKGEALVLNMRDPIL---YFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGP 565
           + F    +   ++  D IL   Y   R+ D+AH   +     +     +  L  I+G+GP
Sbjct: 27  EVFTCGRDIQSVSKTDEILIYTYL--RISDDAH--TLYGFLNKDDLLMFKKLLGISGVGP 82

Query: 566 LRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
                ++ + G+   +  +        +++ +GI +KIA +I
Sbjct: 83  KAALSIMSTLGSFD-LKMAIVSDDYKAISAAQGIGQKIAKRI 123


>gi|330808456|ref|YP_004352918.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376564|gb|AEA67914.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 785

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 557 LD--EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           LD   I  +GP   + L   FG+++ +  +    +     + +K A  +   F
Sbjct: 622 LDKLNIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQA--LPEKQANAVREFF 672



 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S G+++ +  + P+ L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLGSLERVQAAVPQVLTYLPDVGLEVAHEIHSFF 583


>gi|325474386|gb|EGC77574.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           denticola F0402]
          Length = 201

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 19/75 (25%)

Query: 544 THR----------KRRKKAAYSPLDEINGIGPLRKRLL-----LQSFGTV-KMISRSSPE 587
            HR           + +++ +  L ++ G+GP  ++ L     L  F ++ K +     +
Sbjct: 52  YHREDQMRLFGFPNQAERSLFLDLTKVEGVGP--RQALKIMSGLN-FSSLEKALEEGDLD 108

Query: 588 TLASIEGISKKIACK 602
           TL    G+ KK A K
Sbjct: 109 TLQKAPGVGKKTAQK 123


>gi|88861394|ref|ZP_01136024.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
 gi|88816660|gb|EAR26485.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 20/47 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G      L   + T+  I  +S ++L  +  + + +A  +   F +
Sbjct: 521 VGEATALNLANHYLTLDAIMAASVDSLQEVADVGEIVAKHVNFFFRE 567


>gi|222109711|ref|YP_002551975.1| holliday junction DNA helicase ruva [Acidovorax ebreus TPSY]
 gi|254766958|sp|B9MCH5|RUVA_DIAST RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221729155|gb|ACM31975.1| Holliday junction DNA helicase RuvA [Acidovorax ebreus TPSY]
          Length = 190

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACK 602
            L +I+G+GP     +L   G V  ++++ S +    L  + GI KK A +
Sbjct: 74  ELIKISGVGPRTALSILSGMG-VADLAQAVSLQEAGRLVKVPGIGKKTAER 123


>gi|121595991|ref|YP_987887.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42]
 gi|166229625|sp|A1WC36|RUVA_ACISJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120608071|gb|ABM43811.1| Holliday junction DNA helicase RuvA [Acidovorax sp. JS42]
          Length = 190

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACK 602
            L +I+G+GP     +L   G V  ++++ S +    L  + GI KK A +
Sbjct: 74  ELIKISGVGPRTALSILSGMG-VADLAQAVSLQEAGRLVKVPGIGKKTAER 123


>gi|257465376|ref|ZP_05629747.1| ComEA protein [Actinobacillus minor 202]
 gi|257451036|gb|EEV25079.1| ComEA protein [Actinobacillus minor 202]
          Length = 207

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  ++GIG  + + +++    V  I  +S   L++I GI      KI  + 
Sbjct: 157 LQSLSGIGEAKAKAIVEYRNKVGKIKSAS--ELSNISGIGDATIEKITPYL 205


>gi|240949860|ref|ZP_04754185.1| ComEA protein [Actinobacillus minor NM305]
 gi|240295677|gb|EER46382.1| ComEA protein [Actinobacillus minor NM305]
          Length = 207

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  ++GIG  + + +++    V  I  +S   L++I GI      KI  + 
Sbjct: 157 LQSLSGIGEAKAKAIVEYRNKVGKIKSAS--ELSNISGIGDATIEKITPYL 205


>gi|254489942|ref|ZP_05103137.1| DNA ligase, NAD-dependent [Methylophaga thiooxidans DMS010]
 gi|224465027|gb|EEF81281.1| DNA ligase, NAD-dependent [Methylophaga thiooxydans DMS010]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    R L   F  +  +  +  E L  IE +   +A  I   F +
Sbjct: 523 VGEATARSLAMHFADLDALKAADSEALVEIEDVGPIVAHHIETFFQQ 569


>gi|239618403|ref|YP_002941725.1| protein of unknown function DUF147 [Kosmotoga olearia TBF 19.5.1]
 gi|239507234|gb|ACR80721.1| protein of unknown function DUF147 [Kosmotoga olearia TBF 19.5.1]
          Length = 355

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKI 603
            +G++  + ++S E L  +EG+ +K A  I
Sbjct: 312 KYGSLARLLKTSVEELKEVEGVGEKRARAI 341


>gi|171060623|ref|YP_001792972.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6]
 gi|229560097|sp|B1Y8E1|RUVA_LEPCP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170778068|gb|ACB36207.1| Holliday junction DNA helicase RuvA [Leptothrix cholodnii SP-6]
          Length = 191

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +A +  L +I+G+G      +L   G +V  ++++ S +    L  + GI KK A +
Sbjct: 69  RATFRQLLKISGVGARTALSILS--GLSVADLAQAVSAQEAGRLVKVPGIGKKTAER 123


>gi|315656502|ref|ZP_07909391.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315493061|gb|EFU82663.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 799

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R + + F T+  +  +S E L   EGI + IA  I + F
Sbjct: 632 SIRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWF 680


>gi|304390721|ref|ZP_07372673.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325604|gb|EFL92850.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 799

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R + + F T+  +  +S E L   EGI + IA  I + F
Sbjct: 632 SIRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWF 680


>gi|298345134|ref|YP_003717821.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063]
 gi|298235195|gb|ADI66327.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063]
          Length = 799

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP+  R + + F T+  +  +S E L   EGI + IA  I + F
Sbjct: 632 SIRHLGPVAARTIARQFVTMSALRVASAEQLGEAEGIGEVIAASIRDWF 680


>gi|46445654|ref|YP_007019.1| Holliday junction DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|81627839|sp|Q6MFA5|RUVA_PARUW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|46399295|emb|CAF22744.1| probable Holliday junction DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 201

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI 603
           +  +  L  + GIGP     L+    ++  +  +       TL  + G+ KK A ++
Sbjct: 69  RDIFEILMNVTGIGPKMALSLIGHL-SMSELQIAVMRQDLSTLCRVPGVGKKTAERL 124


>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I
 gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
 gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
          Length = 880

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F +V+ +   S + ++      KK+  K+   
Sbjct: 194 GVPGVGEKTAIKLLKQFDSVEKLLE-SIDEVS-----GKKLKEKLEEF 235


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy]
          Length = 948

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASI-EGISKKIACKIYNH 606
            + GIG      LLQ FG+++ I       L  +  G+ KK+A  + N 
Sbjct: 237 GVKGIGEKGAAKLLQQFGSLEGIYS----NLKLVAPGLQKKLAEGVENA 281


>gi|300123590|emb|CBK24862.2| unnamed protein product [Blastocystis hominis]
          Length = 245

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 550 KKAAYS----PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K   +S     L  INGI       L   F T+  I  ++ + L+ + G+  K    IY 
Sbjct: 170 KNDLFSQASNVLTSINGINKDNVVSLTSRFKTMSDIITANIDDLSELSGMGDKRVLSIYR 229

Query: 606 HF 607
            F
Sbjct: 230 AF 231


>gi|254427631|ref|ZP_05041338.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
 gi|196193800|gb|EDX88759.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
          Length = 776

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           IG    + L   FG ++ I R+    L ++  +  ++A  I   F +  + 
Sbjct: 522 IGEETAKNLADCFGDLEGIRRAPLLLLLAVPDVGMEVAKAIGAFFAEADNE 572


>gi|15791243|ref|NP_281067.1| DNA repair and recombination protein RadA [Halobacterium sp. NRC-1]
 gi|10581871|gb|AAG20547.1| DNA repair protein [Halobacterium sp. NRC-1]
          Length = 386

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R+    S L+E+ G+GP     L  + F   + ++ ++   L++   I +  A  +    
Sbjct: 41  RRYMPESDLEELPGVGPATAEKLRDNGFDAFQSLAVANSAELSNTADIGESTAADVIQAA 100

Query: 608 HKNTS 612
            +   
Sbjct: 101 REAAD 105


>gi|325913348|ref|ZP_08175716.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
 gi|325477451|gb|EGC80595.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
          Length = 672

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I+ +G    RL+ + F  +  I   S   L  I+ I + IA  +  +F + +
Sbjct: 513 GIDHVGAKAARLIAKKFHDLNTIRECSIADLMQIDTIGQTIAESMVKYFEQQS 565


>gi|309379780|emb|CBX21556.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 194

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 15/93 (16%)

Query: 519 VLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQ 573
            L      +    +  +R++AH    FA    R+      +  L +++GIG      +L 
Sbjct: 37  NLPPVGESVQLFTQLIIREDAHLLFGFATNEERQ-----TFRQLIKVSGIGAKTALGILS 91

Query: 574 SFGTVKMISRSSPET----LASIEGISKKIACK 602
           +  T   ++R+  E     L+S  GI KK A +
Sbjct: 92  AM-TADELARAVAEEDVKRLSSAPGIGKKTAER 123


>gi|108759370|ref|YP_633776.1| NAD-dependent DNA ligase [Myxococcus xanthus DK 1622]
 gi|123074067|sp|Q1D0P7|DNLJ_MYXXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|108463250|gb|ABF88435.1| DNA ligase, NAD-dependent [Myxococcus xanthus DK 1622]
          Length = 672

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L ++F   +M+  +S E ++ ++ +   +A  I+  F +
Sbjct: 519 GIRHVGDATAKALAEAFPRSEMLFEASLEDISRVKDVGPIMAQVIHTFFQE 569


>gi|331270422|ref|YP_004396914.1| RecD/TraA family helicase [Clostridium botulinum BKT015925]
 gi|329126972|gb|AEB76917.1| helicase, RecD/TraA family [Clostridium botulinum BKT015925]
          Length = 741

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSF--GTVKMISRSSPETLASIEGISKKIACKI 603
           I+GIGP+  + +++ F   T++ +   + E L  I+GI  K    I
Sbjct: 88  ISGIGPVTAKKIVEHFKEKTLE-VLDENIEKLKEIDGIGSKKVETI 132


>gi|289450450|ref|YP_003474988.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184997|gb|ADC91422.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 758

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 551 KAAYSPLD------EINGIGPLRKRLLLQSF--GTVKMISRSSPETLASIEGISKKIACK 602
           KA   PLD       I+ +G +  + L  +F  G +  ++ +  ETL S+E I +  A  
Sbjct: 587 KAKVKPLDRFIVALGIDYVGVVAAKKLAVAFRKGGLSALAAADIETLLSVETIGQTAAQS 646

Query: 603 IYNHFHK 609
           I + F +
Sbjct: 647 IIDFFKR 653


>gi|323342039|ref|ZP_08082272.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464464|gb|EFY09657.1| crossover junction ATP-dependent DNA helicase RuvA [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 195

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAHRFAI--TTHRKRRKKAAYSPLDEINGIGPLR 567
            F    E + LN    I +  Q +R++    AI      ++R+   +  L  + G+GP  
Sbjct: 28  VFCGNPEMVTLN-ESIIFHTYQHVRED----AIILFGFVEKRELDIFRQLITVKGVGPKT 82

Query: 568 KRLLLQSFGTVKMISRSSPET---LASIEGISKKIA 600
              +L  F    ++     E    L  + G+  K+A
Sbjct: 83  GITILSRFSGDDIVRAIDQEDMAFLKKLPGVGPKMA 118


>gi|315231921|ref|YP_004072357.1| glycogen branching enzyme [Thermococcus barophilus MP]
 gi|315184949|gb|ADT85134.1| glycogen branching enzyme [Thermococcus barophilus MP]
          Length = 666

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKK 598
              S L +I GIG    + L ++   T+  +  +  E LA    IS K
Sbjct: 609 NIQSELLKIKGIGSKTLKKLEKAGIRTLNDLKSADLEDLARRTKISVK 656


>gi|329946980|ref|ZP_08294392.1| comEA protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526791|gb|EGF53804.1| comEA protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 267

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+ S L+++ GIGP   + +++       F        +S + L  + GI K     +  
Sbjct: 212 ASASELEKLPGIGPALAQRIVEYRDSHGPF--------ASVDALTDVPGIGKAKLEALRE 263



 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           GTV  I+ +S   L  + GI   +A +I  +
Sbjct: 205 GTV-NINTASASELEKLPGIGPALAQRIVEY 234


>gi|229815190|ref|ZP_04445526.1| hypothetical protein COLINT_02236 [Collinsella intestinalis DSM
           13280]
 gi|229809200|gb|EEP44966.1| hypothetical protein COLINT_02236 [Collinsella intestinalis DSM
           13280]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIY 604
           +A+ S LD + G+GP   R +      V+    +     + E L  + GI +K   K+ 
Sbjct: 190 RASESDLDALPGVGPSTARAI------VED-RDANGPFSTIEDLMRVSGIGEKKFEKLK 241


>gi|94986731|ref|YP_594664.1| exonuclease V subunit alpha [Lawsonia intracellularis PHE/MN1-00]
 gi|94730980|emb|CAJ54343.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit-helicase
           superfamily I member [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 732

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K+   S L  I GIG      ++  FG  T   I  +SPE L  I+GI+KK   +I
Sbjct: 92  KRYLSSGL--IKGIGKKTAESIVTEFGEETFH-ILDTSPEELLKIKGITKKKLDQI 144


>gi|260903878|ref|ZP_05912200.1| competence protein [Brevibacterium linens BL2]
          Length = 302

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 13/59 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L+ + G+GP+    ++       F        ++ + L  + GI  K    + +
Sbjct: 247 ADLTTLETLPGVGPVTAEAIIAYREEQPF--------ATVDDLLLVPGIGPKTFESLKD 297


>gi|309781502|ref|ZP_07676238.1| DNA repair protein RadC [Ralstonia sp. 5_7_47FAA]
 gi|308919915|gb|EFP65576.1| DNA repair protein RadC [Ralstonia sp. 5_7_47FAA]
          Length = 224

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R LL  FG++  +  +S +  +SI G+        Y   H
Sbjct: 48  RELLTHFGSLARLCHASQQEFSSINGMGPAK----YAQLH 83


>gi|269216606|ref|ZP_06160460.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
 gi|269130135|gb|EEZ61217.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
          Length = 709

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G      +  ++ ++  + R+S E LA+I+G+   IA  I    
Sbjct: 544 GIRHVGKTTGAQIAAAYPSMDALMRASEEDLAAIDGVGGIIAKSIRAFL 592


>gi|120602092|ref|YP_966492.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
 gi|166215378|sp|A1VC99|DNLJ1_DESVV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|120562321|gb|ABM28065.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
          Length = 680

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    R L   F  +  + ++  E L  +  I  ++A  I   F   ++
Sbjct: 521 GIRHVGEQTARTLATHFVDLDAMRKADGEKLLHLPDIGPEVAASIRCFFDNQSN 574


>gi|310830491|ref|YP_003965592.1| Helicase RecD/TraA [Paenibacillus polymyxa SC2]
 gi|309249958|gb|ADO59524.1| Helicase RecD/TraA [Paenibacillus polymyxa SC2]
          Length = 749

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKIYNHFHKN 610
           + GIG    + ++  FG  + + R   E     L  + GIS+  A  I +   K+
Sbjct: 101 VKGIGKKTAQKIVDYFGE-EALKR--IEEDHRSLLQVGGISEVRAKAIQDKLFKH 152


>gi|296450073|ref|ZP_06891835.1| probable competence protein [Clostridium difficile NAP08]
 gi|296878454|ref|ZP_06902460.1| probable competence protein [Clostridium difficile NAP07]
 gi|296261081|gb|EFH07914.1| probable competence protein [Clostridium difficile NAP08]
 gi|296430538|gb|EFH16379.1| probable competence protein [Clostridium difficile NAP07]
          Length = 234

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LD + G+G      +LQ       F ++        E + ++ GI  K    I +
Sbjct: 182 ELDSLPGVGEATANKILQHREENGQFSSI--------EEIKNVNGIGDKKYENIKD 229


>gi|281491501|ref|YP_003353481.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis KF147]
 gi|281375219|gb|ADA64732.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis KF147]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +LQ F T+  + ++S   L  I GI   +A  I
Sbjct: 51  ILQHFETLDNLRKASINELREISGIG--LAKSI 81


>gi|83312957|ref|YP_423221.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
 gi|123726860|sp|Q2W0G3|DNLJ_MAGMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|82947798|dbj|BAE52662.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
          Length = 698

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 563 IGPLRKRLLLQSFGTVKMISRS----SPE---TLASIEGISKKIACKIYNHFHKN 610
           IG    + L + +G+      +    + E    L SIE I   +A  + + F + 
Sbjct: 536 IGEATAKRLARHYGSFGAWRAAMLAGTEEARAELTSIEDIGPSVAGDLLDFFSEE 590


>gi|323694423|ref|ZP_08108594.1| competence protein ComEA [Clostridium symbiosum WAL-14673]
 gi|323501504|gb|EGB17395.1| competence protein ComEA [Clostridium symbiosum WAL-14673]
          Length = 230

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIG  R   ++     +G    I     E +  + GI +    KI  
Sbjct: 175 AVKEQLMTLKGIGEARAEAIIAYRQEYGPFARI-----EDIMEVPGIKEAAFQKIKE 226


>gi|323487491|ref|ZP_08092785.1| competence protein CelA [Clostridium symbiosum WAL-14163]
 gi|323399173|gb|EGA91577.1| competence protein CelA [Clostridium symbiosum WAL-14163]
          Length = 230

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIG  R   ++     +G    I     E +  + GI +    KI  
Sbjct: 175 AVKEQLMTLKGIGEARAEAIIAYRQEYGPFARI-----EDIMEVPGIKEAAFQKIKE 226


>gi|251799673|ref|YP_003014404.1| DNA integrity scanning protein DisA [Paenibacillus sp. JDR-2]
 gi|247547299|gb|ACT04318.1| protein of unknown function DUF147 [Paenibacillus sp. JDR-2]
          Length = 358

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L++ FG +  I  ++ + L  ++GI +  A  I +   +
Sbjct: 308 NLIERFGRLPHILMATIDELDEVDGIGEVRARAIKDGLKR 347


>gi|168704922|ref|ZP_02737199.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 230

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L ++ GIG    + ++        F +V        E L ++ GI  +   K+ + FH 
Sbjct: 66  ELVQVPGIGSKTAQSIVLHRQTHGPFRSV--------EELRNVRGIGAQTLEKVRHRFHT 117

Query: 610 NT 611
            T
Sbjct: 118 ET 119


>gi|90415813|ref|ZP_01223746.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2207]
 gi|90332187|gb|EAS47384.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2207]
          Length = 301

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE--GISKKIACKIYNH 606
            + G+G    + LL  F  +  I     + L  +   G S K+A KI NH
Sbjct: 189 GVPGVGAKTAKQLLLHFPDIDAILD-HLDQLQDLPIRGAS-KLADKIDNH 236


>gi|74316642|ref|YP_314382.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
 gi|123745545|sp|Q3SL40|DNLJ_THIDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|74056137|gb|AAZ96577.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
          Length = 686

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    R L + FG +  +  ++   L  +  +   +A  I   F +
Sbjct: 528 GIRNVGETTARDLARHFGALDALLGANETALLGVRDVGPIVAQSIAQFFAE 578


>gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99]
          Length = 875

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 9/49 (18%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I G+   G      LL  FGTV+ +     + +  + G  KK+  K+
Sbjct: 188 DNIPGVAGVGEKTAMKLLNQFGTVEGVY----DHIEEVSG--KKLKEKL 230


>gi|322389291|ref|ZP_08062851.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           903]
 gi|321144035|gb|EFX39453.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           903]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    ++LLQ F  +  ++ + PE +ASI+ +   +A  +  +F +  S
Sbjct: 502 GIRHVGSKVSQILLQEFHDLDQLATADPERIASIDSLGMVVAESLKRYFAQEGS 555



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 559 EINGIGPLRKRLLLQSF-----GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I G+GP     L   F       V  I R + E L ++EG  +K A K+Y     +  +
Sbjct: 436 NITGLGPAVVEKL---FAAQLVEDVAGIYRLTVEDLLTLEGFKEKSAEKLYEAIQASKEN 492

Query: 614 T 614
           +
Sbjct: 493 S 493


>gi|312867643|ref|ZP_07727849.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405]
 gi|311096706|gb|EFQ54944.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    ++LLQ F  +  ++ + PE +ASI+ +   +A  +  +F +  S
Sbjct: 502 GIRHVGSKVSQILLQEFHDLDQLATADPERIASIDSLGMVVAESLKRYFAQEGS 555



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 559 EINGIGPLRKRLLLQSF-----GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I G+GP     L   F       V  I R + E L ++EG  +K A K+Y     +  +
Sbjct: 436 NITGLGPAVVEKL---FAAQLVEDVAGIYRLTVEDLLTLEGFKEKSAEKLYEAIQASKEN 492

Query: 614 T 614
           +
Sbjct: 493 S 493


>gi|312875390|ref|ZP_07735394.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
 gi|311089053|gb|EFQ47493.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
          Length = 672

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I+ +G    RL+ + F  +  I   S   L  I+ I + IA  +  +F + +
Sbjct: 513 GIDHVGAKAARLIAKKFHDLNTIRECSIADLMQIDTIGQTIAESMVKYFEQQS 565


>gi|297622463|ref|YP_003703897.1| excinuclease ABC subunit C domain-containing protein [Truepera
          radiovictrix DSM 17093]
 gi|297163643|gb|ADI13354.1| Excinuclease ABC C subunit domain protein [Truepera radiovictrix
          DSM 17093]
          Length = 119

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 10 PGVYQMLDIAGRVLYVGK-AYNLQKRIKSYMHS 41
          PGVY++ D A RV+Y+G+ A ++  RI+ ++  
Sbjct: 23 PGVYELADEAKRVIYIGQSAKDVPNRIRQHLAG 55


>gi|296046583|gb|ADG86433.1| NAD-dependent DNA ligase [Francisella novicida]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 562 GI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           GI   G    + L   F T++ +  +S ++L  +  + + +A  + + F +
Sbjct: 517 GIREAGEATTQNLANHFLTLENVINASIDSLTQVSDVGEIVATHVRSFFAE 567


>gi|237739010|ref|ZP_04569491.1| DNA repair protein radC [Fusobacterium sp. 2_1_31]
 gi|229423610|gb|EEO38657.1| DNA repair protein radC [Fusobacterium sp. 2_1_31]
          Length = 242

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + +L+ F ++  + ++  + L  I+GI    A  I 
Sbjct: 63  KAILKEFKSLNRVFKADIKELEKIKGIGPISAILIK 98


>gi|73543092|ref|YP_297612.1| SMF protein [Ralstonia eutropha JMP134]
 gi|72120505|gb|AAZ62768.1| SMF protein [Ralstonia eutropha JMP134]
          Length = 379

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            GIGP+  RLLL +FG  + +   S E L+S+  + +K+A  +   
Sbjct: 31  PGIGPVTVRLLLAAFGLPQQVFAQSVEALSSV--VPRKLASAVLAA 74


>gi|77360026|ref|YP_339601.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
 gi|123730523|sp|Q3IKB8|DNLJ_PSEHT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|76874937|emb|CAI86158.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 562 GI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           GI   G    + L   F T++ +  +S ++L  +  + + +A  + + F +
Sbjct: 517 GIREAGEATTQNLANHFLTLENVINASIDSLTQVSDVGEIVATHVRSFFAE 567


>gi|67925673|ref|ZP_00518989.1| Helicase RecD/TraA [Crocosphaera watsonii WH 8501]
 gi|67852481|gb|EAM47924.1| Helicase RecD/TraA [Crocosphaera watsonii WH 8501]
          Length = 748

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I G+GP+  + ++  FG  T+  I       L  + GI KK    I
Sbjct: 92  KYLGSGL--IKGVGPVTAKRIVAHFGLDTLD-IIEYEIGRLVEVPGIGKKRVQMI 143


>gi|329920507|ref|ZP_08277239.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
 gi|328936183|gb|EGG32636.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
          Length = 672

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I+ +G    RL+ + F  +  I   S   L  I+ I + IA  +  +F + +
Sbjct: 513 GIDHVGAKAARLIAKKFHDLNTIRECSIADLMQIDTIGQTIAESMVKYFEQQS 565


>gi|241896587|ref|ZP_04783883.1| late competence protein required for DNA binding and uptake
           [Weissella paramesenteroides ATCC 33313]
 gi|241870179|gb|EER73930.1| late competence protein required for DNA binding and uptake
           [Weissella paramesenteroides ATCC 33313]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 8/46 (17%)

Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599
           L  + GIG  R + +++     G  K     +   L  + GI +K 
Sbjct: 176 LQNLPGIGEKRAQDIIKQRETMGGFK-----TISDLQQVNGIGEKT 216


>gi|146307768|ref|YP_001188233.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina ymp]
 gi|190359273|sp|A4XVY5|DNLJ_PSEMY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145575969|gb|ABP85501.1| DNA ligase, NAD-dependent [Pseudomonas mendocina ymp]
          Length = 786

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  +++ + ++ PE L  +  I  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLERVRQALPEVLTYLPDIGLEVAHEIHSFF 583


>gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
 gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
          Length = 936

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IGP     LL ++GT++ +  +  E LA
Sbjct: 217 DNIPGAKGIGPKTASKLLTTYGTLENVL-AHIEELA 251


>gi|325068547|ref|ZP_08127220.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Actinomyces oris K20]
          Length = 256

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           GT+  I+ +S   L  + GI   +A +I  +
Sbjct: 194 GTI-NINTASASELEKLPGIGPALAQRIVEY 223



 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 14/53 (26%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK 598
           A+ S L+++ GIGP   + +++       F        +S ++L  + GI K 
Sbjct: 201 ASASELEKLPGIGPALAQRIVEYRDSHGPF--------ASVDSLTDVPGIGKA 245


>gi|126658250|ref|ZP_01729400.1| hypothetical protein CY0110_12662 [Cyanothece sp. CCY0110]
 gi|126620399|gb|EAZ91118.1| hypothetical protein CY0110_12662 [Cyanothece sp. CCY0110]
          Length = 276

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 2  SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
          + +++PE  G+Y ++D + R++Y+G++ N+  R K++        +   +  +I    + 
Sbjct: 18 NLDELPEYSGIYFVIDSSDRMIYIGQSENILNRWKNHHRKLQIEEKHQEIPIRIAWKSW- 76

Query: 62 VTCTEVEAL-LLEANMIKRLKPRFN 85
                E L + E   I    P  N
Sbjct: 77 ----NKEDLKIAEKYYINHYHPLLN 97


>gi|111223170|ref|YP_713964.1| putative 5'-3' exonuclease [Frankia alni ACN14a]
 gi|111150702|emb|CAJ62403.1| putative 5'-3' exonuclease [Frankia alni ACN14a]
          Length = 389

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  FG++  I  +
Sbjct: 249 LPGVAGIGAKTAAALLNRFGSLAAILAA 276


>gi|329948298|ref|ZP_08295142.1| hypothetical protein HMPREF9056_03062 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328522822|gb|EGF49930.1| hypothetical protein HMPREF9056_03062 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 28/52 (53%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +I  +  +  R +++ +G+++ +  ++ E L ++EG+  + A  + +  
Sbjct: 292 ILSKIPRLPVVTARAVVEQWGSLQGVLGATIEELEAVEGVGAQRARTLRDGL 343


>gi|326773921|ref|ZP_08233203.1| DNA-binding protein [Actinomyces viscosus C505]
 gi|326636060|gb|EGE36964.1| DNA-binding protein [Actinomyces viscosus C505]
          Length = 388

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 28/52 (53%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +I  +  +  R +++ +G+++ +  ++ E L ++EG+  + A  + +  
Sbjct: 324 ILSKIPRLPVVTARAVVEQWGSLQGVLGATIEELEAVEGVGAQRARTLRDGL 375


>gi|325479360|gb|EGC82456.1| helicase, RecD/TraA family [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 719

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
            + GIG    + +   FG  ++ ++   +P  L  +EGI KK    I
Sbjct: 86  NLKGIGKKTAKAIYDKFGKESIDIVYN-NPNQLLEVEGIGKKKLEDI 131


>gi|325911416|ref|ZP_08173828.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
 gi|325476766|gb|EGC79920.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
          Length = 672

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I+ +G    RL+ + F  +  I   S   L  I+ I + IA  +  +F + +
Sbjct: 513 GIDHVGAKAARLIAKKFHDLNTIRECSIADLMQIDTIGQTIAESMVKYFEQQS 565


>gi|325067978|ref|ZP_08126651.1| DNA integrity scanning protein DisA [Actinomyces oris K20]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 28/52 (53%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +I  +  +  R +++ +G+++ +  ++ E L ++EG+  + A  + +  
Sbjct: 292 ILSKIPRLPVVTARAVVEQWGSLQGVLGATIEELEAVEGVGAQRARTLRDGL 343


>gi|320531191|ref|ZP_08032177.1| DNA integrity scanning family protein [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136594|gb|EFW28556.1| DNA integrity scanning family protein [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 28/52 (53%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +I  +  +  R +++ +G+++ +  ++ E L ++EG+  + A  + +  
Sbjct: 292 ILSKIPRLPVVTARAVVEQWGSLQGVLGATIEELEAVEGVGAQRARTLRDGL 343


>gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
 gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
          Length = 875

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 9/49 (18%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I G+   G      LL  FGTV+ +     + +  + G  KK+  K+
Sbjct: 188 DNIPGVAGVGEKTAMKLLNQFGTVEGVY----DHIEEVSG--KKLKEKL 230


>gi|309808880|ref|ZP_07702761.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
 gi|308167878|gb|EFO70015.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
          Length = 672

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I+ +G    RL+ + F  +  I   S   L  I+ I + IA  +  +F + +
Sbjct: 513 GIDHVGAKAARLIAKKFHDLNTIRECSIADLMQIDTIGQTIAESMVKYFEQQS 565


>gi|294494932|ref|YP_003541425.1| DNA repair and recombination protein RadA [Methanohalophilus mahii
           DSM 5219]
 gi|292665931|gb|ADE35780.1| DNA repair and recombination protein RadA [Methanohalophilus mahii
           DSM 5219]
          Length = 325

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           L+E++ +GP   + L  + + +V+ ++ +SP  L +   I +  A KI
Sbjct: 6   LEELDHVGPATAQKLNDAGYNSVEAVAVASPSELVATAEIGESTAAKI 53


>gi|257465001|ref|ZP_05629372.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202]
 gi|257450661|gb|EEV24704.1| Holliday junction DNA helicase RuvA [Actinobacillus minor 202]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET- 588
           +R++AH    FA     +++ +  +  L + NG+GP     +L +  +V   + +     
Sbjct: 53  VREDAHLLFGFA-----QKQDRMLFRELIKTNGVGPKLALAILSAM-SVSQFASAVENEE 106

Query: 589 ---LASIEGISKKIACKIYNHFH 608
              L  I GI +K A ++     
Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129


>gi|241889770|ref|ZP_04777068.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC
           10379]
 gi|241863392|gb|EER67776.1| holliday junction DNA helicase RuvA [Gemella haemolysans ATCC
           10379]
          Length = 193

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 14/82 (17%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGT-----VKMISRSSPETLASIEGISKKIAC 601
            + +K  +  L ++ G+GP     +L   G      +  I       L    GI KK A 
Sbjct: 62  NKDQKKVFLLLLKVKGVGPKSALAILA--GGTSEEIIGAIENQDVTYLTKFPGIGKKSAQ 119

Query: 602 KIYNHFHK-------NTSHTPT 616
           +I             N S  PT
Sbjct: 120 QIILDLQGKVDFSMTNISSAPT 141


>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
 gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
          Length = 944

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 18/76 (23%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA-----SIE-----GI-SKKIACKI 603
           D I G   +G       L+ FGT++ +  ++ + L       +E     GI SKK+A  I
Sbjct: 195 DNIPGLEGVGEKTAMKFLKEFGTIENLL-ANTDKLKGKLKEKVEASAERGILSKKLATII 253

Query: 604 YNH---FHKNTSHTPT 616
            +    FH+      T
Sbjct: 254 CDAPVEFHQEQYDLET 269


>gi|225868755|ref|YP_002744703.1| DNA ligase [Streptococcus equi subsp. zooepidemicus]
 gi|225702031|emb|CAW99626.1| DNA ligase [Streptococcus equi subsp. zooepidemicus]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    RL+L+++G ++ +   + E LA I+G+   I   +  +F ++ +  
Sbjct: 502 GIRHVGAKASRLILETYGDLETLLSVTAEELAQIDGLGLVIGQSLVQYFQQDQAAQ 557



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 560 INGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           I G+GP     L    L     V  I R S E L +++GI +K A K+     ++ +++
Sbjct: 437 IAGLGPAVVEKLYSAGLVH--DVADIYRLSLEDLLTLDGIKEKSAEKLLAAIEQSKANS 493


>gi|116750704|ref|YP_847391.1| DNA repair protein RadC [Syntrophobacter fumaroxidans MPOB]
 gi|116699768|gb|ABK18956.1| DNA repair protein RadC [Syntrophobacter fumaroxidans MPOB]
          Length = 225

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 26/80 (32%)

Query: 542 ITTHRKR-RKKAAYSPLDE--------------INGIGPLRK------RLLLQSFGTVKM 580
              HR R R++   S L                I      R+      + LL  FG++  
Sbjct: 5   NEGHRARLRERFGRSGLSGFHDHEVLELLLSYAIP-----RRDVKPLAKDLLSRFGSLAA 59

Query: 581 ISRSSPETLASIEGISKKIA 600
           +  + P  L ++ GI    A
Sbjct: 60  VLDAPPAVLRNVPGIGPNAA 79


>gi|307207093|gb|EFN84902.1| DNA excision repair protein ERCC-1 [Harpegnathos saltator]
          Length = 193

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL +FGT+  I R+ P TLA   G     A K+Y   H+
Sbjct: 148 LLSTFGTLDDIVRAQPNTLALCPGFGLHKAQKLYKALHE 186


>gi|294783065|ref|ZP_06748389.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA]
 gi|294479943|gb|EFG27720.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA]
          Length = 696

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  IG +  ++L ++   +  +   + E L SIEGI +  A +I   F K  + 
Sbjct: 537 GIPFIGKVASKVLAKASKNIDKLMSMTFEELTSIEGIGEIAANEIIVFFKKEKTQ 591


>gi|118576306|ref|YP_876049.1| superfamily II helicase [Cenarchaeum symbiosum A]
 gi|118194827|gb|ABK77745.1| superfamily II helicase [Cenarchaeum symbiosum A]
          Length = 604

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 567 RKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           ++ +LL S G  T+  +   S E LA I+GI +K A  I  +   +
Sbjct: 558 KRAMLLYSMGMTTLDSLRNISEEELAEIKGIGQKCAKSIKAYLQSD 603


>gi|30248943|ref|NP_841013.1| putative DNA transport competence protein, ComEA [Nitrosomonas
           europaea ATCC 19718]
 gi|30138560|emb|CAD84851.1| putative DNA transport competence protein, ComEA [Nitrosomonas
           europaea ATCC 19718]
          Length = 120

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 8/46 (17%)

Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599
           L+ + G+GP++ + +++    +G  K     S E LA+++GI   I
Sbjct: 58  LESVKGLGPVKAKAIIEYRNKYGMFK-----SVEELANVKGIGAGI 98


>gi|257869946|ref|ZP_05649599.1| late competence protein ComEA [Enterococcus gallinarum EG2]
 gi|257804110|gb|EEV32932.1| late competence protein ComEA [Enterococcus gallinarum EG2]
          Length = 198

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 18/62 (29%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  S L E+ GIG  +   ++        F TV+ +          + GI  K     Y 
Sbjct: 142 ADSSQLQELPGIGAKKAEAIIAYREEKGFFKTVEEVK--------EVSGIGPKT----YE 189

Query: 606 HF 607
             
Sbjct: 190 AL 191


>gi|74318231|ref|YP_315971.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC
           25259]
 gi|90146182|sp|Q3SGT1|RUVA_THIDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|74057726|gb|AAZ98166.1| DNA recombination protein, RuvA [Thiobacillus denitrificans ATCC
           25259]
          Length = 191

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 16/65 (24%)

Query: 555 SPLDEINGIGPLRKRLLLQS------------FGTVKMISRSSPETLASIEGISKKIACK 602
           S    + GIG      LL              FG+   + R++   L  + GI  K A  
Sbjct: 33  STFYNLPGIGEK--VALLTHLAIREDAHLLYGFGS--EVERAAFRELLKVSGIGAKTALS 88

Query: 603 IYNHF 607
           + +  
Sbjct: 89  VLSGL 93



 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPET----LASIEGISKKIACKIYN 605
           +AA+  L +++GIG      +L   G +V  +S +        +  + GI KK A ++  
Sbjct: 69  RAAFRELLKVSGIGAKTALSVLS--GLSVNDLSAAIAAQEIGRIVKVPGIGKKTAERLLL 126

Query: 606 HFH 608
              
Sbjct: 127 ELK 129


>gi|16800587|ref|NP_470855.1| hypothetical protein lin1519 [Listeria innocua Clip11262]
 gi|16413992|emb|CAC96750.1| comEA [Listeria innocua Clip11262]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 144 ATKIDLQQVPGIGDSKATAIIEY-REKEGLFQ-TIEDLKNVTGIGEKTVEKLKEYL 197


>gi|15672989|ref|NP_267163.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis Il1403]
 gi|13878681|sp|Q9CGT5|Y1007_LACLA RecName: Full=UPF0758 protein LL1007
 gi|12723955|gb|AAK05105.1|AE006335_1 DNA repair protein RadC [Lactococcus lactis subsp. lactis Il1403]
 gi|326406552|gb|ADZ63623.1| DNA repair protein RadC [Lactococcus lactis subsp. lactis CV56]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +LQ F T+  + ++S   L  I GI   +A  I
Sbjct: 51  ILQHFETLDNLRKASINELREISGIG--LAKSI 81


>gi|325194039|emb|CCA28137.1| DNA excision repair protein ERCC1 putative [Albugo laibachii Nc14]
          Length = 293

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL +FGT+K +  ++PE +A   G+  K    +   F +
Sbjct: 250 LLSTFGTMKNLMNATPEEMAVCPGLGAKKLKNLLKAFQE 288


>gi|296331651|ref|ZP_06874120.1| DNA repair protein RadC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675390|ref|YP_003867062.1| putative DNA repair protein [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151246|gb|EFG92126.1| DNA repair protein RadC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413634|gb|ADM38753.1| putative DNA repair protein [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 231

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            LL+SF  ++++  +S E L+SI GI    A +I   
Sbjct: 56  RLLRSFDGLRLLKEASVEELSSIRGIGMVKAVQILAA 92


>gi|323342976|ref|ZP_08083207.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463040|gb|EFY08235.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 659

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G     +L   + T+  +  ++ + L  I+ I   IA  + + F
Sbjct: 508 GIRHVGAKTSNVLAAYYKTIASLMDATYDELIEIDEIGGVIAQSVVSFF 556


>gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
 gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
          Length = 950

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IGP     LL+ +G++  I  +  + L 
Sbjct: 221 DNIPGAKGIGPKTASSLLEEYGSLDNIY-AHLDDLK 255


>gi|33861544|ref|NP_893105.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|33634121|emb|CAE19447.1| Helix-hairpin-helix DNA-binding motif class 1 [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 110

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 560 INGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           I G+G        ++ F T K I+ +  E L ++ G+   +  K+ N
Sbjct: 62  IPGVGAKSAEAFYKAGFKTPKSITSAKDEVLLAVPGVGINLVKKLKN 108


>gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
 gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
          Length = 923

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I       +A+++ +  K++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228


>gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057]
 gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056]
 gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059]
 gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057]
          Length = 923

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I       +A+++ +  K++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228


>gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii SDF]
 gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii]
          Length = 923

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I       +A+++ +  K++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228


>gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058]
 gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
 gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
          Length = 923

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I       +A+++ +  K++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228


>gi|157369207|ref|YP_001477196.1| DNA polymerase IV [Serratia proteamaculans 568]
 gi|189027680|sp|A8GAC8|DPO4_SERP5 RecName: Full=DNA polymerase IV; Short=Pol IV
 gi|157320971|gb|ABV40068.1| DNA-directed DNA polymerase [Serratia proteamaculans 568]
          Length = 353

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKR-------------------LLLQSFGTVKMI----------SRSSP 586
           PL +I G+G +  +                    LL+ FG    +             SP
Sbjct: 177 PLSKIPGVGKVTAKRLEEVGLITCADVQQYDLAALLKRFGKFGRVLWERCQGIDLREVSP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           E L    G+ + +A  I++ 
Sbjct: 237 ERLRKSVGVERTLAEDIHDW 256


>gi|325143946|gb|EGC66256.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240013]
 gi|325206489|gb|ADZ01942.1| DNA ligase, NAD-dependent [Neisseria meningitidis M04-240196]
          Length = 841

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 661


>gi|325135742|gb|EGC58354.1| DNA ligase, NAD-dependent [Neisseria meningitidis M0579]
          Length = 841

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 661


>gi|325129804|gb|EGC52612.1| DNA ligase, NAD-dependent [Neisseria meningitidis OX99.30304]
          Length = 841

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 661


>gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
          Length = 878

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 24/108 (22%)

Query: 509 KFFVKKGEALVL-NMRDPILYF---IQRLR--DEAHRFAITTHRKRRKKAAYSPL----- 557
                  + L L + R  + Y    I  ++  DEA  FA       + K     L     
Sbjct: 141 IIVTGDRDELQLIDKRTKVFYTKRGISDIQVFDEA-EFAANY-EGLQPKQLI-ELKGLMG 197

Query: 558 ---DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
              D I G+   GP     L++ +G V+ +     E +  + G S K 
Sbjct: 198 DTSDNIPGVPGVGPKTAMKLIKEYGNVETV----LENIEKVSGKSLKT 241


>gi|308388851|gb|ADO31171.1| DNA ligase [Neisseria meningitidis alpha710]
 gi|325202538|gb|ADY97992.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240149]
 gi|325207712|gb|ADZ03164.1| DNA ligase, NAD-dependent [Neisseria meningitidis NZ-05/33]
          Length = 841

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 661


>gi|297250739|ref|ZP_06934237.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768]
 gi|296838226|gb|EFH22164.1| DNA ligase, NAD-dependent [Neisseria polysaccharea ATCC 43768]
          Length = 539

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 304 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 359


>gi|254670337|emb|CBA05747.1| DNA ligase [Neisseria meningitidis alpha153]
          Length = 841

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQA 661


>gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900]
          Length = 923

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I       +A+++ +  K++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228


>gi|228993070|ref|ZP_04152993.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus pseudomycoides DSM 12442]
 gi|228766718|gb|EEM15358.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus pseudomycoides DSM 12442]
          Length = 199

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L++I GIGP +   +L+     G  + +     E L  ++GI +K   KI +
Sbjct: 143 ASKEQLEKITGIGPRKAENILKYREGHGPFQKM-----EDLLEVDGIGEKSLEKIKD 194


>gi|227503896|ref|ZP_03933945.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940]
 gi|227199519|gb|EEI79567.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940]
          Length = 680

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP+  R L   + +++ +  +S   LA  +G+   IA      F ++
Sbjct: 525 SIRHVGPIAARALATRYRSMEALRAASESELADTDGVGGIIAASFKAWFEED 576


>gi|127513305|ref|YP_001094502.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
 gi|166216242|sp|A3QFJ5|DNLJ_SHELP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|126638600|gb|ABO24243.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
          Length = 669

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F T++ + ++  ET   ++ +   +A  + + F
Sbjct: 520 VGEATAANLANYFKTLEHLKQADAETFMKVDDVGVIVAQHLVHFF 564


>gi|189347498|ref|YP_001944027.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
 gi|254781283|sp|B3EFT6|DNLJ_CHLL2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189341645|gb|ACD91048.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLL---LQSFGTVKMISRSSPETLASIEGISK 597
           AI   R +        L  I  +G    R L      F ++     +  + LA +  I  
Sbjct: 505 AIEESRTKSYDRLLYAL-GIRHVGQATARELAGAYPYFASLH---EAGEQELAEVPDIGP 560

Query: 598 KIACKIYNHFHK 609
            +A  I + F K
Sbjct: 561 VVARSIIDFFSK 572


>gi|110637848|ref|YP_678055.1| DNA processing protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110280529|gb|ABG58715.1| DNA processing protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 364

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH--FHKNTS 612
           I G+G    + L+   G  + I ++    L +I GI       IY+    H+  S
Sbjct: 13  IPGVGAATTKTLISYCGCAEQIFKTPKGKLKNIPGIGAVTVDNIYSASVLHEAES 67


>gi|307138727|ref|ZP_07498083.1| hypothetical protein EcolH7_11466 [Escherichia coli H736]
 gi|331642688|ref|ZP_08343823.1| putative chaperonin [Escherichia coli H736]
 gi|331039486|gb|EGI11706.1| putative chaperonin [Escherichia coli H736]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK        ++      E      RD     +  L+D A           R++     
Sbjct: 473 IAKRAMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 512

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 513 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 568

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 569 ASCERRFVFRPNEAVTP 585


>gi|296876694|ref|ZP_06900742.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           15912]
 gi|296432196|gb|EFH17995.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
           15912]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    ++LLQ F  +  ++ + PE +ASI+ +   +A  + ++F +  S
Sbjct: 502 GIRHVGSKVSQILLQEFHDIDQLATADPERIASIDSLGMVVAESLKSYFAQEGS 555



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 559 EINGIGPLRKRLLLQSF-----GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I G+GP     L   F       V  I R + E L ++EG  +K A K+Y     +  +
Sbjct: 436 NITGLGPAVVEKL---FAAQLVEDVAGIYRLTVEDLLTLEGFKEKSAEKLYEAIQASKEN 492

Query: 614 T 614
           +
Sbjct: 493 S 493


>gi|258512697|ref|YP_003186131.1| DNA integrity scanning protein DisA [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479423|gb|ACV59742.1| DNA integrity scanning, DisA, linker region [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 359

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              L++ FG +  I ++S   L  +EG+    A  I N  
Sbjct: 307 IENLVEHFGVLSNILKASMADLDKVEGVGPVRARMIQNGL 346


>gi|187933408|ref|YP_001884449.1| DNA integrity scanning protein DisA [Clostridium botulinum B str.
           Eklund 17B]
 gi|226729438|sp|B2TIF1|DISA_CLOBB RecName: Full=DNA integrity scanning protein disA
 gi|187721561|gb|ACD22782.1| DNA integrity scanning protein DisA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 354

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L++ F  +  +  +  + L  +EGI +  A  I +   +
Sbjct: 302 IENLIKEFKELNSVIEADIDELDIVEGIGEARAKAIKDGLKR 343


>gi|88192676|pdb|2CSB|A Chain A, Crystal Structure Of Topoisomerase V From Methanopyrus
           Kandleri (61 Kda Fragment)
 gi|88192677|pdb|2CSB|B Chain B, Crystal Structure Of Topoisomerase V From Methanopyrus
           Kandleri (61 Kda Fragment)
          Length = 519

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPE 587
           RL +EA+R A+            + L +  G+G      LL++FG  + + +       E
Sbjct: 396 RLSEEAYRAAVE--------IQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIE 447

Query: 588 TLASIEGISKKI 599
            LAS+EG+ +++
Sbjct: 448 KLASVEGVGERV 459



 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            L  I GI   R   LL+ +G    +  +  E L  
Sbjct: 469 SLISIRGIDRERAERLLKKYGGYSKVREAGVEELRE 504


>gi|88192678|pdb|2CSD|A Chain A, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
 gi|88192679|pdb|2CSD|B Chain B, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
          Length = 519

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPE 587
           RL +EA+R A+            + L +  G+G      LL++FG  + + +       E
Sbjct: 396 RLSEEAYRAAVE--------IQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIE 447

Query: 588 TLASIEGISKKI 599
            LAS+EG+ +++
Sbjct: 448 KLASVEGVGERV 459



 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            L  I GI   R   LL+ +G    +  +  E L  
Sbjct: 469 SLISIRGIDRERAERLLKKYGGYSKVREAGVEELRE 504


>gi|242309633|ref|ZP_04808788.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489]
 gi|239523634|gb|EEQ63500.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489]
          Length = 94

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           KA+   L  I GIG  + + ++      +     S + L +I+G   KI  KI
Sbjct: 36  KASKEELMSIKGIGEAKAQAIIDY---REKTPLKSIDDLKNIKGFGPKIIEKI 85



 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           FG V  ++++S E L SI+GI +  A  I ++
Sbjct: 29  FGAVD-LNKASKEELMSIKGIGEAKAQAIIDY 59


>gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
          Length = 886

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           L  + GIGP     LL  F +++ I  +  + L++
Sbjct: 203 LPGVPGIGPKTAAALLDRFESIEGIL-AHLDALSA 236


>gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU]
 gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
 gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Acinetobacter baumannii ACICU]
 gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
 gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
 gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
          Length = 923

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I       +A+++ +  K++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228


>gi|297198471|ref|ZP_06915868.1| 5'-3' exonuclease [Streptomyces sviceus ATCC 29083]
 gi|297147105|gb|EDY61418.2| 5'-3' exonuclease [Streptomyces sviceus ATCC 29083]
          Length = 306

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  FG +  I  +
Sbjct: 202 LPGVPGIGEKTAAKLLDQFGDLAGIMAA 229


>gi|291547495|emb|CBL20603.1| helicase, putative, RecD/TraA family [Ruminococcus sp. SR1/5]
          Length = 876

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           K   S L  + G+GP   + +++ FG  T+ +I   +P+ L  + GI K    +I   + 
Sbjct: 83  KYLGSGL--VKGVGPKFAKRIVEKFGKDTLDVIEE-TPDELLKVSGIGKVRVDRIKTSWQ 139

Query: 609 K 609
           +
Sbjct: 140 E 140


>gi|290961715|ref|YP_003492897.1| 5'-3' exonuclease [Streptomyces scabiei 87.22]
 gi|260651241|emb|CBG74363.1| putative 5'-3' exonuclease [Streptomyces scabiei 87.22]
          Length = 316

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  FG +  I  +
Sbjct: 212 LPGVPGIGEKTAAKLLDQFGDLAGIMAA 239


>gi|254822707|ref|ZP_05227708.1| DNA integrity scanning protein DisA [Mycobacterium intracellulare
           ATCC 13950]
          Length = 360

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           L++SFGT++ +  +S   L S++GI    A  +     +    T T
Sbjct: 311 LVRSFGTLQNVLAASASDLQSVDGIGAMWARHVREGLSQLAESTIT 356


>gi|240949538|ref|ZP_04753878.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305]
 gi|240296111|gb|EER46772.1| Holliday junction DNA helicase RuvA [Actinobacillus minor NM305]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET- 588
           +R++AH    FA     +++ +  +  L + NG+GP     +L +  +V   + +     
Sbjct: 53  VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVSQFANAVENEE 106

Query: 589 ---LASIEGISKKIACKIYNHFH 608
              L  I GI +K A ++     
Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129


>gi|213406491|ref|XP_002174017.1| mating-type switching protein swi10 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002064|gb|EEB07724.1| mating-type switching protein swi10 [Schizosaccharomyces japonicus
           yFS275]
          Length = 251

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
            I GI       L+  FG++K    ++ E L  I+G       K+        +H P
Sbjct: 179 SIRGINKSDCLSLIAHFGSMKRALTATQEELEQIDGFGPT---KVRRFL--EATHQP 230


>gi|210630510|ref|ZP_03296493.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279]
 gi|210160444|gb|EEA91415.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279]
          Length = 756

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G     ++ Q F TV  ++ +S E +A  EGI  KIA  +    
Sbjct: 583 GIRHVGKSVAEVIAQRFLTVDALAAASEEDIAGCEGIGPKIAASVRQFL 631


>gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 923

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I       +A+++ +  K++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228


>gi|320528995|ref|ZP_08030087.1| helicase, RecD/TraA family [Selenomonas artemidis F0399]
 gi|320138625|gb|EFW30515.1| helicase, RecD/TraA family [Selenomonas artemidis F0399]
          Length = 724

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I+G+GP   R ++  FG  +  +I  + P  L  + GI  K   KI
Sbjct: 101 IDGVGPAMARRIVDRFGAKSFAIIETA-PHRLKEVPGIGAKTLEKI 145


>gi|224369899|ref|YP_002604063.1| LigA1 [Desulfobacterium autotrophicum HRM2]
 gi|254781310|sp|C0QJ86|DNLJ_DESAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|223692616|gb|ACN15899.1| LigA1 [Desulfobacterium autotrophicum HRM2]
          Length = 685

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 564 GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-HKNTSHT 614
           G    +LL  +F T++ + ++S E L +IEG+  K A  +   F + +   T
Sbjct: 532 GESAAQLLSSTFFTLEALLKASAEALGAIEGVGPKTADSVVAFFANPDNQET 583


>gi|19553005|ref|NP_601007.1| hypothetical protein NCgl1730 [Corynebacterium glutamicum ATCC
           13032]
 gi|62390682|ref|YP_226084.1| nuclease subunit of the excinuclease complex [Corynebacterium
           glutamicum ATCC 13032]
 gi|21324573|dbj|BAB99197.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
 gi|41326020|emb|CAF20183.1| putative nuclease subunit of the excinuclease complex
           [Corynebacterium glutamicum ATCC 13032]
          Length = 503

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 12  VYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMI----SQINNIRFTVTCTEV 67
           +Y+  D  G++LY+G+  N   R++ +    +  H    ++    S +         T+ 
Sbjct: 362 IYRAFDREGQLLYIGETINPLVRLREHAGLGSINHAHHRLVSPWFSTMATFHLESCFTQA 421

Query: 68  EALLLEANMIKRLKPRFN 85
           EA   EA  IK  +PR+N
Sbjct: 422 EAKEKEALYIKLEQPRYN 439


>gi|332799457|ref|YP_004460956.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Tepidanaerobacter sp. Re1]
 gi|332697192|gb|AEE91649.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Tepidanaerobacter sp. Re1]
          Length = 197

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L ++ GIGP+  + ++        F T+  I          + GI  K   +I +
Sbjct: 145 ELIQLPGIGPVTAQKIMDYRKTNGLFKTIDDIKN--------VSGIGDKKFEQIKD 192


>gi|289772665|ref|ZP_06532043.1| 5'-3' exonuclease [Streptomyces lividans TK24]
 gi|289702864|gb|EFD70293.1| 5'-3' exonuclease [Streptomyces lividans TK24]
          Length = 306

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  FG +  I  +
Sbjct: 202 LPGVPGIGEKTAAKLLAEFGDLAGIQAA 229


>gi|256788770|ref|ZP_05527201.1| 5'-3' exonuclease [Streptomyces lividans TK24]
          Length = 301

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  FG +  I  +
Sbjct: 197 LPGVPGIGEKTAAKLLAEFGDLAGIQAA 224


>gi|268589737|ref|ZP_06123958.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131]
 gi|291314889|gb|EFE55342.1| holliday junction DNA helicase RuvA [Providencia rettgeri DSM 1131]
          Length = 205

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  I + +  +L  + GI KK A +
Sbjct: 66  KQERALFKELIKVNGVGPKLALAILSGMSAQQF--VSAIEQEAIASLVKLPGIGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|198283038|ref|YP_002219359.1| NAD-dependent DNA ligase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666742|ref|YP_002425245.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|254781244|sp|B7J653|DNLJ_ACIF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781245|sp|B5EP61|DNLJ_ACIF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|198247559|gb|ACH83152.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518955|gb|ACK79541.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           ++ ++ L        I  +G    + L   FG +  +  ++PE L +I  +   +A  + 
Sbjct: 504 RSRHTSLPRFLYALGIRQVGEGTAKSLAIYFGDLDPLMAATPELLQNIPDVGPIVAESVA 563

Query: 605 NHF 607
           + F
Sbjct: 564 HFF 566


>gi|156056488|ref|XP_001594168.1| hypothetical protein SS1G_05598 [Sclerotinia sclerotiorum 1980]
 gi|154703380|gb|EDO03119.1| hypothetical protein SS1G_05598 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           + G+       L+   G +K ++ +S E L     + K+   +I+  F+K+
Sbjct: 878 VPGVTGKNLGNLVVELGNIKEVANASLEELE--PAVGKEAGRQIHRFFNKS 926


>gi|86359706|ref|YP_471597.1| hypothetical protein RHE_PA00001 [Rhizobium etli CFN 42]
 gi|86283808|gb|ABC92870.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 318

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)

Query: 62  VTCTEVEALLLEANMIKRLKPRFNILLRDDKSFP 95
            T  E  AL  EA++I+  KP++N+L +D  SFP
Sbjct: 195 TTAVERIAL-YEASLIRYFKPKYNVLFKD--SFP 225


>gi|21220118|ref|NP_625897.1| 5'-3' exonuclease [Streptomyces coelicolor A3(2)]
 gi|17367064|sp|Q9RJ79|EX53_STRCO RecName: Full=5'-3' exonuclease
 gi|6119664|emb|CAB59475.1| putative 5'-3' exonuclease [Streptomyces coelicolor A3(2)]
          Length = 301

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  FG +  I  +
Sbjct: 197 LPGVPGIGEKTAAKLLAEFGDLAGIQAA 224


>gi|13471076|ref|NP_102645.1| DNA repair protein RadC [Mesorhizobium loti MAFF303099]
 gi|14021820|dbj|BAB48431.1| DNA repair protein; RadC [Mesorhizobium loti MAFF303099]
          Length = 179

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + LL  FGT+  +  +    L  ++GI   +A
Sbjct: 37  KALLARFGTLAEVLGAPVNLLQEVKGIGPAVA 68


>gi|329120426|ref|ZP_08249092.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462110|gb|EGF08438.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 887

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT+  + R+    LA +  I + +A  + + F ++    
Sbjct: 636 GIRHVGERTAKTLAQAFGTLDTVRRAPEPVLACLPDIGEVVARSVAHFFAQDAQQA 691


>gi|239909102|ref|YP_002955844.1| DNA repair protein RadC [Desulfovibrio magneticus RS-1]
 gi|239798969|dbj|BAH77958.1| DNA repair protein RadC [Desulfovibrio magneticus RS-1]
          Length = 228

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 21/87 (24%)

Query: 544 THRKR---------RKKAAYSPLDEINGIGPLRK------RLLLQSFGTVKMISRSSPET 588
            HR+R         R  A Y  L+ + G   +R+      + LL  FG+++ +  +  E 
Sbjct: 12  GHRRRLKDRLLDDPRALAKYEVLELVLGYVNVRRDNKPLAKELLARFGSLRGVLTARFEE 71

Query: 589 LASIEGISK------KIACKIYNHFHK 609
           L  + G          +  +++  FH+
Sbjct: 72  LRGVPGFGAGAEEFLTLWREVWARFHE 98


>gi|194468325|ref|ZP_03074311.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23]
 gi|194453178|gb|EDX42076.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri 100-23]
          Length = 199

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     +L      G V  I+ ++   L    GI KK A +I
Sbjct: 68  KNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKTASQI 123


>gi|148543762|ref|YP_001271132.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri DSM
           20016]
 gi|184153168|ref|YP_001841509.1| Holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM
           1112]
 gi|227363258|ref|ZP_03847390.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri MM2-3]
 gi|325682134|ref|ZP_08161652.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri MM4-1A]
 gi|167012661|sp|A5VIX1|RUVA_LACRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560094|sp|B2G6E7|RUVA_LACRJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148530796|gb|ABQ82795.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus reuteri
           DSM 20016]
 gi|183224512|dbj|BAG25029.1| holliday junction DNA helicase RuvA [Lactobacillus reuteri JCM
           1112]
 gi|227071714|gb|EEI10005.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri MM2-3]
 gi|324978778|gb|EGC15727.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri MM4-1A]
          Length = 199

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     +L      G V  I+ ++   L    GI KK A +I
Sbjct: 68  KNLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVSYLTKFPGIGKKTASQI 123


>gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4]
 gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4]
          Length = 875

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL+ FGT++ +   S + ++      KK+  K+
Sbjct: 191 GVPGVGEKTALKLLKQFGTIENVLD-SVDDVS-----GKKLKEKL 229


>gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
 gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
          Length = 923

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I       +A+++ +  K++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 228


>gi|119487266|ref|ZP_01621017.1| DNA ligase [Lyngbya sp. PCC 8106]
 gi|119455821|gb|EAW36956.1| DNA ligase [Lyngbya sp. PCC 8106]
          Length = 685

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +ING+G    + L++     +V  +   + E L  +E I +K A KI N 
Sbjct: 459 DINGVGEKLVQQLVERKLISSVADLYELTVEKLTQLERIGEKSATKIVNA 508


>gi|297537403|ref|YP_003673172.1| DNA protecting protein DprA [Methylotenera sp. 301]
 gi|297256750|gb|ADI28595.1| DNA protecting protein DprA [Methylotenera sp. 301]
          Length = 371

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K+ +  L  I+GIG      LL++FG    I  +S   L  +  +S  IA +I
Sbjct: 17  KSLWIALSSIHGIGSQTFCQLLKTFGNPSHIFTASHSQLKEV--VSDAIAAEI 67


>gi|78044333|ref|YP_360355.1| Holliday junction DNA helicase RuvA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|90134706|sp|Q3ABX9|RUVA_CARHZ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77996448|gb|ABB15347.1| Holliday junction DNA helicase RuvA [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 195

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACKIYNHFH 608
           L  ++GIGP     +L  F T +     I+    + L  + G+ KK A +++    
Sbjct: 74  LLSVSGIGPKAALAILNEF-TPEKLNWVIANKDEKALTKVPGVGKKNAQRLFLELK 128


>gi|325203416|gb|ADY98869.1| competence protein comEA [Neisseria meningitidis M01-240355]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASLQELEALPGIGPAKAKAIAEY 48


>gi|325198757|gb|ADY94213.1| hypothetical protein NMBG2136_1528 [Neisseria meningitidis G2136]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 85  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 77  NINAASQQELEALPGIGPAKAKAIAEY 103


>gi|325138986|gb|EGC61534.1| competence protein comEA [Neisseria meningitidis ES14902]
 gi|325142815|gb|EGC65185.1| competence protein comEA [Neisseria meningitidis 961-5945]
 gi|325143057|gb|EGC65407.1| competence protein comEA [Neisseria meningitidis 961-5945]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASQQELEALPGIGPAKAKAIAEY 48


>gi|325135463|gb|EGC58082.1| competence protein comEA [Neisseria meningitidis M0579]
 gi|325201345|gb|ADY96799.1| competence protein comEA [Neisseria meningitidis M01-240149]
 gi|325203186|gb|ADY98639.1| competence protein comEA [Neisseria meningitidis M01-240355]
 gi|325204967|gb|ADZ00421.1| competence protein comEA [Neisseria meningitidis M01-240355]
 gi|325207325|gb|ADZ02777.1| competence protein comEA [Neisseria meningitidis NZ-05/33]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASLQELEALPGIGPAKAKAIAEY 48


>gi|325134734|gb|EGC57372.1| ComE1 [Neisseria meningitidis M13399]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASQQELEALPGIGPAKAKAIAEY 48


>gi|325133016|gb|EGC55690.1| competence protein comEA [Neisseria meningitidis M6190]
 gi|325138680|gb|EGC61233.1| competence protein comEA [Neisseria meningitidis ES14902]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASQQELEALPGIGPAKAKAIAEY 48


>gi|325132997|gb|EGC55672.1| competence protein comEA [Neisseria meningitidis M6190]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASQQELEALPGIGPAKAKAIAEY 48


>gi|325131426|gb|EGC54135.1| competence protein comEA [Neisseria meningitidis M6190]
 gi|325133484|gb|EGC56148.1| competence protein comEA [Neisseria meningitidis M13399]
 gi|325137459|gb|EGC60046.1| competence protein comEA [Neisseria meningitidis ES14902]
 gi|325141459|gb|EGC63935.1| competence protein comEA [Neisseria meningitidis 961-5945]
 gi|325143725|gb|EGC66044.1| competence protein comEA [Neisseria meningitidis M01-240013]
 gi|325199005|gb|ADY94461.1| competence protein comEA [Neisseria meningitidis G2136]
 gi|325199108|gb|ADY94564.1| competence protein comEA [Neisseria meningitidis G2136]
 gi|325201065|gb|ADY96520.1| competence protein comEA [Neisseria meningitidis H44/76]
 gi|325206922|gb|ADZ02375.1| competence protein comEA [Neisseria meningitidis M04-240196]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASQQELEALPGIGPAKAKAIAEY 48


>gi|325130922|gb|EGC53650.1| ComE1 [Neisseria meningitidis OX99.30304]
 gi|325131102|gb|EGC53823.1| ComE1 [Neisseria meningitidis OX99.30304]
 gi|325137125|gb|EGC59720.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Neisseria meningitidis M0579]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASLQELEALPGIGPAKAKAIAEY 48


>gi|325129404|gb|EGC52237.1| competence protein comEA [Neisseria meningitidis OX99.30304]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASLQELEALPGIGPAKAKAIAEY 48


>gi|325129162|gb|EGC52009.1| comE1 [Neisseria meningitidis N1568]
          Length = 76

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 7   ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 54


>gi|325128957|gb|EGC51810.1| comE1 [Neisseria meningitidis N1568]
          Length = 82

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASQQELEALPGIGPAKAKAIAEY 48


>gi|325127392|gb|EGC50326.1| comE1 [Neisseria meningitidis N1568]
          Length = 100

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 31  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 78



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 23  NINAASQQELEALPGIGPAKAKAIAEY 49


>gi|319411218|emb|CBY91625.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE
           2594]
 gi|319411446|emb|CBY91861.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE
           2594]
 gi|325133132|gb|EGC55803.1| competence protein comEA [Neisseria meningitidis M6190]
 gi|325135182|gb|EGC57807.1| competence protein comEA [Neisseria meningitidis M13399]
 gi|325138749|gb|EGC61301.1| competence protein comEA [Neisseria meningitidis ES14902]
 gi|325145194|gb|EGC67475.1| competence protein comEA [Neisseria meningitidis M01-240013]
 gi|325205162|gb|ADZ00615.1| competence protein comEA [Neisseria meningitidis M04-240196]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASQQELEALPGIGPAKAKAIAEY 48


>gi|319409673|emb|CBY89974.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE
           2594]
 gi|319410911|emb|CBY91306.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE
           2594]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 79  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 71  NINAASQQELEALPGIGPAKAKAIAEY 97


>gi|316984292|gb|EFV63266.1| comE1 [Neisseria meningitidis H44/76]
 gi|325135003|gb|EGC57632.1| competence protein comEA [Neisseria meningitidis M13399]
 gi|325141030|gb|EGC63535.1| competence protein comEA [Neisseria meningitidis CU385]
 gi|325141050|gb|EGC63554.1| DNA transport competence protein [Neisseria meningitidis CU385]
 gi|325197358|gb|ADY92814.1| ComE1 [Neisseria meningitidis G2136]
 gi|325199499|gb|ADY94954.1| competence protein comEA [Neisseria meningitidis H44/76]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASQQELEALPGIGPAKAKAIAEY 48


>gi|313667706|ref|YP_004047990.1| DNA transport competence protein [Neisseria lactamica ST-640]
 gi|313005168|emb|CBN86601.1| putative DNA transport competence protein [Neisseria lactamica
           020-06]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77


>gi|308388515|gb|ADO30835.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha710]
 gi|308389779|gb|ADO32099.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha710]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 79  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 71  NINAASLQELEALPGIGPAKAKAIAEY 97


>gi|308388278|gb|ADO30598.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha710]
 gi|325136880|gb|EGC59477.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Neisseria meningitidis M0579]
 gi|325201244|gb|ADY96698.1| ComE1 [Neisseria meningitidis M01-240149]
 gi|325202875|gb|ADY98329.1| ComE1 [Neisseria meningitidis M01-240149]
 gi|325207103|gb|ADZ02555.1| competence protein comEA [Neisseria meningitidis NZ-05/33]
 gi|325208869|gb|ADZ04321.1| competence protein comEA [Neisseria meningitidis NZ-05/33]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASLQELEALPGIGPAKAKAIAEY 48


>gi|304389134|ref|ZP_07371175.1| competence protein comEA [Neisseria meningitidis ATCC 13091]
 gi|304336910|gb|EFM03103.1| competence protein comEA [Neisseria meningitidis ATCC 13091]
          Length = 128

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 79  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 71  NINAASQQELEALPGIGPAKAKAIAEY 97


>gi|296315134|ref|ZP_06865075.1| competence protein comEA [Neisseria polysaccharea ATCC 43768]
 gi|296315363|ref|ZP_06865304.1| competence protein comEA [Neisseria polysaccharea ATCC 43768]
 gi|296837676|gb|EFH21614.1| competence protein comEA [Neisseria polysaccharea ATCC 43768]
 gi|296837938|gb|EFH21876.1| competence protein comEA [Neisseria polysaccharea ATCC 43768]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +SP+ L ++ GI    A  I  +
Sbjct: 22  NINAASPQELEALPGIGPAKAKAIAEY 48


>gi|261393343|emb|CAX50979.1| DNA-binding competence protein ComE4 [Neisseria meningitidis 8013]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 85  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 77  NINAASQQELEALPGIGPAKAKAIAEY 103


>gi|261391831|emb|CAX49288.1| DNA-binding competence protein ComE2 [Neisseria meningitidis 8013]
 gi|261392119|emb|CAX49616.1| DNA-binding competence protein ComE3 [Neisseria meningitidis 8013]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 85  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 77  NINAASQQELEALPGIGPAKAKAIAEY 103


>gi|261391604|emb|CAX49042.1| DNA-binding competence protein ComE1 [Neisseria meningitidis 8013]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 85  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 77  NINAASQQELEALPGIGPAKAKAIAEY 103


>gi|254672840|emb|CBA07032.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha275]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 79  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 71  NINAASLQELEALPGIGPAKAKAIAEY 97


>gi|254672424|emb|CBA05774.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha275]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 79  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 71  NINAASLQELEALPGIGPAKAKAIAEY 97


>gi|254672109|emb|CBA04820.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha275]
 gi|254673651|emb|CBA09218.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha275]
          Length = 96

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 27  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 74



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 19  NINAASLQELEALPGIGPAKAKAIAEY 45


>gi|254671769|emb|CBA09614.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha153]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 79  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 71  NINAASQQELEALPGIGPAKAKAIAEY 97


>gi|254671711|emb|CBA09499.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha153]
 gi|325139338|gb|EGC61879.1| competence protein comEA [Neisseria meningitidis CU385]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASQQELEALPGIGPAKAKAIAEY 48


>gi|254805414|ref|YP_003083635.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254805662|ref|YP_003083883.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254805867|ref|YP_003084088.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254668956|emb|CBA07235.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254669204|emb|CBA07991.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254669409|emb|CBA08604.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 79  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 71  NINAASLQELEALPGIGPAKAKAIAEY 97


>gi|254804171|ref|YP_003082392.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254667713|emb|CBA03589.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 79  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 71  NINAASLQELEALPGIGPAKAKAIAEY 97


>gi|161869185|ref|YP_001598351.1| DNA transport competence protein [Neisseria meningitidis 053442]
 gi|161594738|gb|ABX72398.1| DNA transport competence protein [Neisseria meningitidis 053442]
          Length = 128

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 59  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 106



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 51  NINAASQQELEALPGIGPAKAKAIAEY 77


>gi|161869075|ref|YP_001598241.1| DNA transport competence protein [Neisseria meningitidis 053442]
 gi|161594628|gb|ABX72288.1| DNA transport competence protein [Neisseria meningitidis 053442]
          Length = 145

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 76  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 123



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 68  NINAASQQELEALPGIGPAKAKAIAEY 94


>gi|159154700|gb|ABW93685.1| ComEA [Neisseria meningitidis]
 gi|254669594|emb|CBA03607.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha153]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 79  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 71  NINAASQQELEALPGIGPAKAKAIAEY 97


>gi|121635674|ref|YP_975919.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120867380|emb|CAM11152.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 85  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 77  NINAASQQELEALPGIGPAKAKAIAEY 103


>gi|121635298|ref|YP_975543.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|121635568|ref|YP_975813.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120867004|emb|CAM10767.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120867274|emb|CAM11045.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 85  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 77  NINAASQQELEALPGIGPAKAKAIAEY 103


>gi|121633939|ref|YP_974184.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120865645|emb|CAM09365.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 85  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 77  NINAASQQELEALPGIGPAKAKAIAEY 103


>gi|118479620|ref|YP_896771.1| DNA repair protein RadC [Bacillus thuringiensis str. Al Hakam]
 gi|118418845|gb|ABK87264.1| DNA replication and repair protein RadC [Bacillus thuringiensis
           str. Al Hakam]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87


>gi|5051421|emb|CAB44964.1| ComEA protein [Neisseria meningitidis]
          Length = 170

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 101 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 148



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 93  NINAASQQELEALPGIGPAKAKAIAEY 119


>gi|5051417|emb|CAB44958.1| ComEA protein [Neisseria meningitidis]
          Length = 170

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 101 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 148



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 93  NINAASQQELEALPGIGPAKAKAIAEY 119


>gi|15676221|ref|NP_273353.1| comEA-related protein [Neisseria meningitidis MC58]
 gi|7225524|gb|AAF40750.1| comEA-related protein [Neisseria meningitidis MC58]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 79  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 71  NINAASQQELEALPGIGPAKAKAIAEY 97


>gi|15677506|ref|NP_274662.1| comE operon protein 1-related protein [Neisseria meningitidis MC58]
 gi|7226909|gb|AAF42006.1| comE operon protein 1-related protein [Neisseria meningitidis MC58]
          Length = 205

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 136 ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 183



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 128 NINAASQQELEALPGIGPAKAKAIAEY 154


>gi|15677842|ref|NP_275009.1| ComEA-related protein [Neisseria meningitidis MC58]
 gi|7227278|gb|AAF42340.1| ComEA-related protein [Neisseria meningitidis MC58]
 gi|316985667|gb|EFV64614.1| comE1 [Neisseria meningitidis H44/76]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 79  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 126



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 71  NINAASQQELEALPGIGPAKAKAIAEY 97


>gi|218767241|ref|YP_002341753.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|218767410|ref|YP_002341922.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|121051249|emb|CAM07524.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|121051418|emb|CAM07711.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 85  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 77  NINAASQQELEALPGIGPAKAKAIAEY 103


>gi|218768680|ref|YP_002343192.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|218768920|ref|YP_002343432.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|121052688|emb|CAM09030.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|121052928|emb|CAM09282.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 85  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 132



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 77  NINAASQQELEALPGIGPAKAKAIAEY 103


>gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 929

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + LL  FG+++ +  ++ + L 
Sbjct: 191 DNIPGLPGVGEKTAKKLLADFGSLENLL-ANTDQLK 225


>gi|326389491|ref|ZP_08211058.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus JW 200]
 gi|325994496|gb|EGD52921.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus JW 200]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R+K     L  + GIG      L++ F T + + ++    +    G ++K+   I   
Sbjct: 3   REKIFKIWLSTVKGIGYKSFVQLMEFFKTAEGVYKAKEIDIFKAIG-NRKLVQNIIEA 59


>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
 gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
          Length = 885

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IGP   + LL  FG+V+ I  ++ E +A
Sbjct: 184 DNIPGVKGIGPKGAKKLLDDFGSVENIY-ANLERIA 218


>gi|158337778|ref|YP_001518954.1| DNA protecting protein DprA [Acaryochloris marina MBIC11017]
 gi|158308019|gb|ABW29636.1| DNA protecting protein DprA [Acaryochloris marina MBIC11017]
          Length = 376

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           I GIGP+  + L Q FGT+     +   TL ++ GI  +    I  H  ++T+ T
Sbjct: 13  IPGIGPVVLKRLQQRFGTLSSAWSADSGTLGAVTGIGAQTLKTIQKH-RQSTNPT 66


>gi|257077010|ref|ZP_05571371.1| DNA repair and recombination protein RadA [Ferroplasma acidarmanus
           fer1]
          Length = 335

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +++ G+G      L ++ +  +  I+ +SP+ LA I GI++  A KI N   K
Sbjct: 27  EDLPGVGEATAEKLRENGYDDIMAIAVASPKDLADISGIAEGAAVKIINAARK 79


>gi|153009239|ref|YP_001370454.1| DNA repair protein RadC [Ochrobactrum anthropi ATCC 49188]
 gi|229470322|sp|A6X071|Y1909_OCHA4 RecName: Full=UPF0758 protein Oant_1909
 gi|151561127|gb|ABS14625.1| DNA repair protein RadC [Ochrobactrum anthropi ATCC 49188]
          Length = 249

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 18/36 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + LL  FG++  +  +  + +A + G    +A ++ 
Sbjct: 73  KALLMRFGSIAEVLAAPEKLIAEVPGAGPTVAHELK 108


>gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii]
          Length = 876

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      LL+ F TV+ +   S + ++      KK+  ++  H
Sbjct: 192 GVPGIGEKTAIKLLKEFETVEKVVD-SIDEIS-----GKKLKERLQEH 233


>gi|46143844|ref|ZP_00133975.2| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207771|ref|YP_001052996.1| Holliday junction DNA helicase RuvA [Actinobacillus
           pleuropneumoniae L20]
 gi|303252521|ref|ZP_07338684.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247270|ref|ZP_07529319.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249498|ref|ZP_07531486.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307256311|ref|ZP_07538094.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260744|ref|ZP_07542433.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166229626|sp|A3MZ05|RUVA_ACTP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|126096563|gb|ABN73391.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302648489|gb|EFL78682.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856243|gb|EFM88397.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858491|gb|EFM90559.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306865137|gb|EFM97037.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869583|gb|EFN01371.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 201

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET- 588
           +R++AH    FA     +++ +  +  L + NG+GP     +L +  +V   + +     
Sbjct: 53  VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVSQFANAVENEE 106

Query: 589 ---LASIEGISKKIACKIYNHFH 608
              L  I GI +K A ++     
Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129


>gi|315093170|gb|EFT65146.1| comEA protein [Propionibacterium acnes HL060PA1]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 14/59 (23%)

Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            S L+ I+G+GP+    ++        F        +S + L  I GI  K   KI  +
Sbjct: 230 QSELETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPY 280


>gi|314966912|gb|EFT11011.1| comEA protein [Propionibacterium acnes HL082PA2]
 gi|327327733|gb|EGE69509.1| ComE operon protein 1 [Propionibacterium acnes HL103PA1]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 14/59 (23%)

Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            S L+ I+G+GP+    ++        F        +S + L  I GI  K   KI  +
Sbjct: 230 QSELETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPY 280


>gi|317129783|ref|YP_004096065.1| DNA repair protein RadC [Bacillus cellulosilyticus DSM 2522]
 gi|315474731|gb|ADU31334.1| DNA repair protein RadC [Bacillus cellulosilyticus DSM 2522]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +Q F  +K++  +S   L +I+GI +  A  I   
Sbjct: 54  IQHFDGLKLLKEASIPELQNIKGIGEAKAVTIKAA 88


>gi|261839678|gb|ACX99443.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           52]
          Length = 183

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L +ING+G      +L       F ++        + L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123


>gi|50842380|ref|YP_055607.1| ComE operon protein 1 [Propionibacterium acnes KPA171202]
 gi|282854162|ref|ZP_06263499.1| comEA protein [Propionibacterium acnes J139]
 gi|50839982|gb|AAT82649.1| ComE operon protein 1 [Propionibacterium acnes KPA171202]
 gi|282583615|gb|EFB88995.1| comEA protein [Propionibacterium acnes J139]
 gi|314923143|gb|EFS86974.1| comEA protein [Propionibacterium acnes HL001PA1]
 gi|314981253|gb|EFT25347.1| comEA protein [Propionibacterium acnes HL110PA3]
 gi|315091822|gb|EFT63798.1| comEA protein [Propionibacterium acnes HL110PA4]
 gi|315103325|gb|EFT75301.1| comEA protein [Propionibacterium acnes HL050PA2]
 gi|315105530|gb|EFT77506.1| comEA protein [Propionibacterium acnes HL030PA1]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 14/59 (23%)

Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            S L+ I+G+GP+    ++        F        +S + L  I GI  K   KI  +
Sbjct: 230 QSELETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPY 280


>gi|323704240|ref|ZP_08115819.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536306|gb|EGB26078.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 205

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 552 AAYSPLDEINGIGPLRKRLLL----QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    LD + GIG +  + ++    Q  G  + I     E + ++  I  K+  +I +
Sbjct: 149 ATKEELDTLPGIGEVTAQRIIDFREQH-GNFQRI-----EDIMNVSRIGPKLFEQIKD 200


>gi|229824009|ref|ZP_04450078.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271]
 gi|229786363|gb|EEP22477.1| hypothetical protein GCWU000282_01313 [Catonella morbi ATCC 51271]
          Length = 197

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIA 600
             R +++K  ++ L +++GIGP     +L      G ++ I       L    G+ KK A
Sbjct: 63  GFRDQQEKQLFNTLLKVSGIGPKSALSILALDDHVGLIQAIDSGDSTYLTKFPGVGKKTA 122

Query: 601 CK 602
            +
Sbjct: 123 QQ 124


>gi|167037677|ref|YP_001665255.1| DNA protecting protein DprA [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116092|ref|YP_004186251.1| DNA protecting protein DprA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856511|gb|ABY94919.1| DNA protecting protein DprA [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929183|gb|ADV79868.1| DNA protecting protein DprA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R+K     L  + GIG      L++ F T + + ++    +    G ++K+   I   
Sbjct: 3   REKIFKIWLSTVKGIGYKSFVQLMEFFKTAEGVYKAKEIDIFKAIG-NRKLVQNIIEA 59


>gi|167646221|ref|YP_001683884.1| hypothetical protein Caul_2259 [Caulobacter sp. K31]
 gi|167348651|gb|ABZ71386.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 245

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 11 GVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTH 46
          GVY   D  G  +YVG+    L+ RI+ ++ +     
Sbjct: 53 GVYAFFDYDGEPIYVGQTNERLRSRIRRHLTNQRTDA 89


>gi|120406291|ref|YP_956120.1| DNA integrity scanning protein DisA [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959109|gb|ABM16114.1| protein of unknown function DUF147 [Mycobacterium vanbaalenii
           PYR-1]
          Length = 373

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L+++FG+++ +  ++   L S++GI    A  I     +    T
Sbjct: 324 LVRNFGSLQGLLAATATDLQSVDGIGSMWARHIREGLSQLAEST 367


>gi|29833256|ref|NP_827890.1| 5'-3' exonuclease [Streptomyces avermitilis MA-4680]
 gi|29610378|dbj|BAC74425.1| putative 5'-3' exonuclease [Streptomyces avermitilis MA-4680]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  FG +  I  +
Sbjct: 205 LPGVPGIGEKTAAKLLAEFGDLAGIMAA 232


>gi|116493020|ref|YP_804755.1| Holliday junction DNA helicase subunit RuvA [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265516|sp|Q03EQ9|RUVA_PEDPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116103170|gb|ABJ68313.1| Holliday junction DNA helicase subunit RuvA [Pediococcus
           pentosaceus ATCC 25745]
          Length = 195

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIA 600
             +K   K  +  L ++ GIGP     +L      G +  I+      L     I  K A
Sbjct: 59  GFKKAEDKELFLNLLKVKGIGPKSALAILANDDHTGLINAINNDDVSYLKKFPKIGPKAA 118

Query: 601 CKI 603
            +I
Sbjct: 119 QQI 121


>gi|309389493|gb|ADO77373.1| DNA replication and repair protein RadC [Halanaerobium praevalens
           DSM 2228]
          Length = 231

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + LL  +G +K +   S E L  I GI    A +I
Sbjct: 55  QDLLNLYGGLKGLQDLSCEELKKINGIGTAKAAQI 89


>gi|307264857|ref|ZP_07546419.1| DNA protecting protein DprA [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920115|gb|EFN50327.1| DNA protecting protein DprA [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R+K     L  + GIG      L++ F T + + ++    +    G ++K+   I   
Sbjct: 3   REKIFKIWLSTVKGIGYKSFVQLMEFFKTAEGVYKAKEIDIFKAIG-NRKLVQNIIEA 59


>gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
 gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
          Length = 864

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            I G+G      LLQ +G+++ I       L + E +  K+   I  +
Sbjct: 191 GIPGVGEKTALKLLQEYGSLENI-------LENAEKLKGKLRENILKY 231


>gi|258590906|emb|CBE67201.1| DNA repair protein radC homolog [NC10 bacterium 'Dutch sediment']
          Length = 236

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 28/95 (29%)

Query: 530 IQRLRDEAHRFAITTHRKR-RKKAAYS---PLDE-----------INGIGPLRK------ 568
           +Q+ R EA  + +  HR+R R +   S    L +           I      R+      
Sbjct: 7   MQQAR-EAKNY-VAGHRERLRARYRLSGEVALQDYELLELLLTYAIP-----RRDTKLLA 59

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + LL+ FGT+  +  + P  L +I+G+  + A  I
Sbjct: 60  KRLLERFGTLARVVEAEPAALEAIDGMGPQAATLI 94


>gi|169236999|ref|YP_001690199.1| DNA repair and recombination protein RadA [Halobacterium salinarum
           R1]
 gi|13878695|sp|Q9HMM4|RADA_HALSA RecName: Full=DNA repair and recombination protein radA
 gi|226736606|sp|B0R7Y4|RADA_HALS3 RecName: Full=DNA repair and recombination protein radA
 gi|167728065|emb|CAP14853.1| DNA repair protein [Halobacterium salinarum R1]
          Length = 343

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           S L+E+ G+GP     L  + F   + ++ ++   L++   I +  A  +     +   
Sbjct: 4   SDLEELPGVGPATAEKLRDNGFDAFQSLAVANSAELSNTADIGESTAADVIQAAREAAD 62


>gi|327439585|dbj|BAK15950.1| DNA uptake protein [Solibacillus silvestris StLB046]
          Length = 215

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA+   L ++ GIGP +   ++Q     G  ++I     E L ++ GI  K   ++ +
Sbjct: 158 KASEGELTQLPGIGPAKAAAIIQHRSEQGNFQII-----EDLKNVTGIGDKTFEQLKD 210


>gi|206558866|ref|YP_002229626.1| SMF family protein [Burkholderia cenocepacia J2315]
 gi|198034903|emb|CAR50775.1| SMF family protein [Burkholderia cenocepacia J2315]
          Length = 437

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            G+ P   +LLL +FG+ + + R+S E +A++   S   A  +
Sbjct: 36  PGLSPAVLQLLLAAFGSPEALLRASDEAIATVS--SPAAAQAV 76


>gi|282864307|ref|ZP_06273363.1| 5'-3' exonuclease [Streptomyces sp. ACTE]
 gi|282560794|gb|EFB66340.1| 5'-3' exonuclease [Streptomyces sp. ACTE]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL +FG +  I  +
Sbjct: 207 LPGVPGIGEKTAAKLLDAFGDLAGIMAA 234


>gi|320011768|gb|ADW06618.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Streptomyces flavogriseus ATCC 33331]
          Length = 302

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL +FG +  I  +
Sbjct: 198 LPGVPGIGEKTAAKLLDAFGDLAGIMAA 225


>gi|227495098|ref|ZP_03925414.1| competence protein ComEA [Actinomyces coleocanis DSM 15436]
 gi|226831550|gb|EEH63933.1| competence protein ComEA [Actinomyces coleocanis DSM 15436]
          Length = 225

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           +  +S   L S++GI +K A +I ++ +++    P
Sbjct: 168 LKTASLTELTSLKGIGEKTAQRILDYRNEHGIKQP 202



 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           K A+ + L  + GIG    + +L        I +  P+ L +I+GI +K 
Sbjct: 169 KTASLTELTSLKGIGEKTAQRILDY-RNEHGIKQ--PQDLLNIDGIGQKT 215


>gi|294811677|ref|ZP_06770320.1| Putative 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|326440139|ref|ZP_08214873.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|294324276|gb|EFG05919.1| Putative 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 329

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL +FG +  I  +
Sbjct: 225 LPGVPGIGEKTAAKLLDAFGDLAGIMAA 252


>gi|254392836|ref|ZP_05008006.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|197706493|gb|EDY52305.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 301

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL +FG +  I  +
Sbjct: 197 LPGVPGIGEKTAAKLLDAFGDLAGIMAA 224


>gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 879

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I       +A+++ +  K++  I ++ 
Sbjct: 143 GVPGVGAKTAAKLLTEYGTLDNI-------IANVDQLKGKLSQNIKDNL 184


>gi|126435099|ref|YP_001070790.1| 5'-3' exonuclease [Mycobacterium sp. JLS]
 gi|126234899|gb|ABN98299.1| 5'-3' exonuclease [Mycobacterium sp. JLS]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + G+G      LL  FG+++ I  +
Sbjct: 208 LPGVPGVGEKTAATLLAQFGSLEAIVAA 235


>gi|108799445|ref|YP_639642.1| 5'-3' exonuclease [Mycobacterium sp. MCS]
 gi|119868558|ref|YP_938510.1| 5'-3' exonuclease [Mycobacterium sp. KMS]
 gi|108769864|gb|ABG08586.1| 5'-3' exonuclease [Mycobacterium sp. MCS]
 gi|119694647|gb|ABL91720.1| 5'-3' exonuclease [Mycobacterium sp. KMS]
          Length = 316

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + G+G      LL  FG+++ I  +
Sbjct: 208 LPGVPGVGEKTAATLLAQFGSLEAIVAA 235


>gi|58262688|ref|XP_568754.1| exonuclease [Cryptococcus neoformans var. neoformans JEC21]
 gi|57223404|gb|AAW41447.1| exonuclease, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 1012

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISR 583
           LD I GIG      L++ F +V+ + +
Sbjct: 154 LDSIPGIGIKTAHRLMRRFNSVEKLLQ 180


>gi|134108762|ref|XP_777034.1| hypothetical protein CNBB5600 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259717|gb|EAL22387.1| hypothetical protein CNBB5600 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1089

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISR 583
           LD I GIG      L++ F +V+ + +
Sbjct: 231 LDSIPGIGIKTAHRLMRRFNSVEKLLQ 257


>gi|296139879|ref|YP_003647122.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Tsukamurella paurometabola DSM 20162]
 gi|296028013|gb|ADG78783.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Tsukamurella paurometabola DSM 20162]
          Length = 320

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           L  + GIG      LL  +G++  I  ++ + 
Sbjct: 215 LPGVPGIGEKTASKLLLQYGSLAAIRDAAAQQ 246


>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 930

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMI 581
            I GIG    + L+Q FG+V+ I
Sbjct: 194 GIPGIGEKTAKKLVQDFGSVEGI 216


>gi|70984637|ref|XP_747825.1| DNA repair protein RAD1 [Aspergillus fumigatus Af293]
 gi|66845452|gb|EAL85787.1| DNA repair protein RAD1, putative [Aspergillus fumigatus Af293]
 gi|159122608|gb|EDP47729.1| DNA repair protein RAD1, putative [Aspergillus fumigatus A1163]
          Length = 975

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           L  + G+ P     L+   G +  I+    E L     I ++ A KI   F KN
Sbjct: 919 LRAVPGVTPKVLERLILETGNISEIANMDVEQLD--PLIGREAARKIVGFFRKN 970


>gi|261377933|ref|ZP_05982506.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
 gi|269145793|gb|EEZ72211.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
          Length = 831

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FG+++ + R+    LA +  I   +A  I   F ++    
Sbjct: 589 GIRHVGERTAKTLAQAFGSLEHVRRAPEPILACLPDIGTVVAHSIAYFFAQDAQQA 644


>gi|152996211|ref|YP_001341046.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1]
 gi|189045756|sp|A6VXD2|RUVA_MARMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|150837135|gb|ABR71111.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MWYL1]
          Length = 200

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           + ++A +  L ++NGIGP     +L S  +   +  +  S    L  I G+ KK A ++
Sbjct: 66  KNERALFRVLIKVNGIGPKMALAILSSMSSEELITNVQESDVTALTRIPGVGKKTAERL 124


>gi|170742375|ref|YP_001771030.1| RecD/TraA family helicase [Methylobacterium sp. 4-46]
 gi|168196649|gb|ACA18596.1| helicase, RecD/TraA family [Methylobacterium sp. 4-46]
          Length = 736

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 562 GIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKIYNH 606
           GIGP   + ++ +FG+    +  ++PE L  + GI    A ++   
Sbjct: 111 GIGPQMAKRIVAAFGSETFAVIEANPERLTEVPGIGPTRAARLVAA 156


>gi|144899097|emb|CAM75961.1| NAD-dependent DNA ligase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 693

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 563 IGPLRKRLLLQSFGTV----KMISRS------SPETLASIEGISKKIACKIYNHFHKN 610
           +G    + L + +G+     + +  +      S   L SIE I   +A  I   F ++
Sbjct: 536 VGEATAKRLARHYGSFAVWRESMLAAVPRENDSYHDLISIEDIGPAVANDILAFFAED 593


>gi|220927794|ref|YP_002504703.1| DNA integrity scanning protein DisA [Clostridium cellulolyticum
           H10]
 gi|219998122|gb|ACL74723.1| protein of unknown function DUF147 [Clostridium cellulolyticum H10]
          Length = 361

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + ++  F  ++ + ++S E L  +EGI +  A  I    
Sbjct: 308 KNMINEFQNLQGVVKASIEDLDKVEGIGEVRAKSITEGL 346


>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
          Length = 871

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I GI   G      LL+ FG+V+ +       L +I  +S KI   I
Sbjct: 187 DNIPGIPNIGEKTAIKLLKEFGSVENL-------LENISKLSGKIKETI 228


>gi|23099511|ref|NP_692977.1| DNA repair protein [Oceanobacillus iheyensis HTE831]
 gi|22777740|dbj|BAC14012.1| DNA repair protein (RadC family) [Oceanobacillus iheyensis HTE831]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 13/63 (20%)

Query: 553 AYSPLDEINGIGPLRKR--------LLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
             S L     IG   K+         +L  F  +K+I  ++ E L +I+GI       I 
Sbjct: 34  ILSIL-----IGSGTKQDSVNVLSNRILMHFEGMKLIRDATIEELIAIKGIGTAKGLIIL 88

Query: 605 NHF 607
              
Sbjct: 89  AAI 91


>gi|333028231|ref|ZP_08456295.1| putative 5'-3' exonuclease [Streptomyces sp. Tu6071]
 gi|332748083|gb|EGJ78524.1| putative 5'-3' exonuclease [Streptomyces sp. Tu6071]
          Length = 302

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           L  + GIG      LL ++G +  I  ++ +
Sbjct: 197 LPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 227


>gi|318075728|ref|ZP_07983060.1| 5'-3' exonuclease [Streptomyces sp. SA3_actF]
          Length = 302

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           L  + GIG      LL ++G +  I  ++ +
Sbjct: 197 LPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 227


>gi|318059078|ref|ZP_07977801.1| 5'-3' exonuclease [Streptomyces sp. SA3_actG]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           L  + GIG      LL ++G +  I  ++ +
Sbjct: 204 LPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 234


>gi|313837329|gb|EFS75043.1| comEA protein [Propionibacterium acnes HL037PA2]
 gi|314927997|gb|EFS91828.1| comEA protein [Propionibacterium acnes HL044PA1]
 gi|314971713|gb|EFT15811.1| comEA protein [Propionibacterium acnes HL037PA3]
 gi|328907123|gb|EGG26889.1| comEA protein [Propionibacterium sp. P08]
          Length = 280

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 14/59 (23%)

Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            S L+ I+G+GP+    ++        F        +S + L  I GI  K   KI  H
Sbjct: 227 QSELETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPH 277


>gi|313764601|gb|EFS35965.1| comEA protein [Propionibacterium acnes HL013PA1]
 gi|313792291|gb|EFS40392.1| comEA protein [Propionibacterium acnes HL110PA1]
 gi|313801760|gb|EFS42994.1| comEA protein [Propionibacterium acnes HL110PA2]
 gi|313816138|gb|EFS53852.1| comEA protein [Propionibacterium acnes HL059PA1]
 gi|313827959|gb|EFS65673.1| comEA protein [Propionibacterium acnes HL063PA2]
 gi|313838590|gb|EFS76304.1| comEA protein [Propionibacterium acnes HL086PA1]
 gi|314915595|gb|EFS79426.1| comEA protein [Propionibacterium acnes HL005PA4]
 gi|314918449|gb|EFS82280.1| comEA protein [Propionibacterium acnes HL050PA1]
 gi|314919938|gb|EFS83769.1| comEA protein [Propionibacterium acnes HL050PA3]
 gi|314931952|gb|EFS95783.1| comEA protein [Propionibacterium acnes HL067PA1]
 gi|314955819|gb|EFT00219.1| comEA protein [Propionibacterium acnes HL027PA1]
 gi|314958301|gb|EFT02404.1| comEA protein [Propionibacterium acnes HL002PA1]
 gi|314962950|gb|EFT07050.1| comEA protein [Propionibacterium acnes HL082PA1]
 gi|314967976|gb|EFT12075.1| comEA protein [Propionibacterium acnes HL037PA1]
 gi|315077593|gb|EFT49649.1| comEA protein [Propionibacterium acnes HL053PA2]
 gi|315098392|gb|EFT70368.1| comEA protein [Propionibacterium acnes HL059PA2]
 gi|315101252|gb|EFT73228.1| comEA protein [Propionibacterium acnes HL046PA1]
 gi|315108476|gb|EFT80452.1| comEA protein [Propionibacterium acnes HL030PA2]
 gi|327450924|gb|EGE97578.1| comEA protein [Propionibacterium acnes HL087PA3]
 gi|327452997|gb|EGE99651.1| comEA protein [Propionibacterium acnes HL092PA1]
 gi|327453726|gb|EGF00381.1| comEA protein [Propionibacterium acnes HL083PA2]
 gi|328754346|gb|EGF67962.1| comEA protein [Propionibacterium acnes HL087PA1]
 gi|328754924|gb|EGF68540.1| comEA protein [Propionibacterium acnes HL025PA2]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 14/59 (23%)

Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            S L+ I+G+GP+    ++        F        +S + L  I GI  K   KI  H
Sbjct: 230 QSELETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPH 280


>gi|302518090|ref|ZP_07270432.1| 5'-3' exonuclease [Streptomyces sp. SPB78]
 gi|302426985|gb|EFK98800.1| 5'-3' exonuclease [Streptomyces sp. SPB78]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           L  + GIG      LL ++G +  I  ++ +
Sbjct: 207 LPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 237


>gi|295839822|ref|ZP_06826755.1| 5'-3' exonuclease [Streptomyces sp. SPB74]
 gi|295827663|gb|EDY44700.2| 5'-3' exonuclease [Streptomyces sp. SPB74]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           L  + GIG      LL ++G +  I  ++ +
Sbjct: 207 LPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 237


>gi|291533539|emb|CBL06652.1| competence protein ComEA helix-hairpin-helix repeat region
           [Megamonas hypermegale ART12/1]
          Length = 201

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 14/53 (26%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK 598
           A    LD + GIGP   + ++        F ++        E + +++GI + 
Sbjct: 146 ATKEDLDTLPGIGPATAQKIIDYRQEHGNFSSI--------EDIKNVKGIGEA 190


>gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment']
          Length = 873

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 10/44 (22%)

Query: 556 PLDEING---IGPLRKRLLLQSFGTVK-------MISRSSPETL 589
           P+D I G   IG    R L+Q FG ++        I  +    +
Sbjct: 183 PIDNIPGVHGIGEKTARNLIQQFGNIEETVARLHEIKSAKVREI 226


>gi|228999120|ref|ZP_04158702.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus mycoides Rock3-17]
 gi|229006668|ref|ZP_04164302.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus mycoides Rock1-4]
 gi|228754529|gb|EEM03940.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus mycoides Rock1-4]
 gi|228760737|gb|EEM09701.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus mycoides Rock3-17]
          Length = 199

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L++I GIGP +   +L+     G  + +     E L  ++GI +K   KI +
Sbjct: 143 ASKEQLEKITGIGPRKAENILKYREEHGPFQKM-----EDLLEVDGIGEKSLEKIKD 194


>gi|153813174|ref|ZP_01965842.1| hypothetical protein RUMOBE_03590 [Ruminococcus obeum ATCC 29174]
 gi|149830705|gb|EDM85796.1| hypothetical protein RUMOBE_03590 [Ruminococcus obeum ATCC 29174]
          Length = 636

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ FG  T +++    PE L+ ++GIS+K A +I
Sbjct: 91  IKGIGAALAGRIVRHFGDDTFQIVEN-EPERLSEVKGISEKKAREI 135


>gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
 gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
          Length = 939

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  + +V+ +       +A+ + I  K+  KI  
Sbjct: 195 GIPGVGEKTAMKLLSQYHSVEEV-------IANADKIGGKMGEKIKA 234


>gi|261343863|ref|ZP_05971508.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM
           4541]
 gi|282568250|gb|EFB73785.1| holliday junction DNA helicase RuvA [Providencia rustigianii DSM
           4541]
          Length = 205

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  I + +  +L  + GI KK A +
Sbjct: 66  KQERALFKELIKVNGVGPKLALAILSGMSAQQF--VSAIEQEAISSLVKLPGIGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|212711936|ref|ZP_03320064.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM
           30120]
 gi|212685458|gb|EEB44986.1| hypothetical protein PROVALCAL_03011 [Providencia alcalifaciens DSM
           30120]
          Length = 205

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  I + +  +L  + GI KK A +
Sbjct: 66  KQERALFKELIKVNGVGPKLALAILSGMSAQQF--VSAIEQEAISSLVKLPGIGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|183599000|ref|ZP_02960493.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827]
 gi|188021215|gb|EDU59255.1| hypothetical protein PROSTU_02444 [Providencia stuartii ATCC 25827]
          Length = 205

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  I + +  +L  + GI KK A +
Sbjct: 66  KQERALFKELIKVNGVGPKLALAILSGMSAQQF--VSAIEQEAISSLVKLPGIGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|167040338|ref|YP_001663323.1| DNA protecting protein DprA [Thermoanaerobacter sp. X514]
 gi|300914422|ref|ZP_07131738.1| DNA protecting protein DprA [Thermoanaerobacter sp. X561]
 gi|307724342|ref|YP_003904093.1| DNA protecting protein DprA [Thermoanaerobacter sp. X513]
 gi|166854578|gb|ABY92987.1| DNA protecting protein DprA [Thermoanaerobacter sp. X514]
 gi|300889357|gb|EFK84503.1| DNA protecting protein DprA [Thermoanaerobacter sp. X561]
 gi|307581403|gb|ADN54802.1| DNA protecting protein DprA [Thermoanaerobacter sp. X513]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           R+K     L  + GIG      L++ F T + + ++    +    G ++K+   I   
Sbjct: 3   REKIFKIWLSTVKGIGYKSFVQLMEFFKTAEEVYKAKEIDIFKAIG-NRKLVQNIIEA 59


>gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington]
 gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I
 gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi]
 gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 872

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++SI+
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQISSIK 223


>gi|297562768|ref|YP_003681742.1| helicase, RecD/TraA family [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847216|gb|ADH69236.1| helicase, RecD/TraA family [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 750

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYNH 606
           ++   S L  I GIGP     ++  FGT  +++I    PE L  + G+  K    I + 
Sbjct: 90  RRYLGSGL--IKGIGPKMAERIVDHFGTDALEVIEE-HPERLIEVPGLGPKRTRLIADA 145


>gi|225851368|ref|YP_002731602.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
 gi|254781385|sp|C0QSF6|DNLJ_PERMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|225645574|gb|ACO03760.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
          Length = 714

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G +  R L ++   V+ +   S E L  +  +   +A  IY+ FH   +
Sbjct: 554 VGKVTARTLAENINCVEDLKDWSVEDLERLPDVGYVVAHSIYDFFHNPDN 603


>gi|154686915|ref|YP_001422076.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens
           FZB42]
 gi|308174476|ref|YP_003921181.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|166230516|sp|A7Z769|RUVA_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|154352766|gb|ABS74845.1| RuvA [Bacillus amyloliquefaciens FZB42]
 gi|307607340|emb|CBI43711.1| Holliday junction DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|328554396|gb|AEB24888.1| Holliday junction DNA helicase RuvA [Bacillus amyloliquefaciens
           TA208]
 gi|328912801|gb|AEB64397.1| Holliday junction ATP-dependent DNA helicase ruvA [Bacillus
           amyloliquefaciens LL3]
          Length = 201

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 9/62 (14%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGT------VKMISRSSPETLASIEGISKKIAC 601
           R +KA ++ L  + GIGP     +L   G+      ++ I +     L    G+ KK A 
Sbjct: 63  REEKALFTKLLNVTGIGPKGALAIL---GSGDPGAVIEAIEQEDEAFLVKFPGVGKKTAR 119

Query: 602 KI 603
           +I
Sbjct: 120 QI 121


>gi|328780415|ref|XP_003249798.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase iota [Apis
           mellifera]
          Length = 564

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 559 EINGIGPLRKRLLL-QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +I G+G    +LL+  +  T+  + ++S ETL    GI   +A K+ +
Sbjct: 230 KIPGVGQKTTQLLMSNNIKTIDDLRKTSLETLEMKIGI--DLARKLKD 275


>gi|298486340|ref|ZP_07004403.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159347|gb|EFI00405.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 628

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           I  +GP   + L   FGT++ I  +    +     + +K A  + + F ++ 
Sbjct: 469 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQT--LPEKQAKSVRDFFDESA 518



 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 376 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 424


>gi|254412599|ref|ZP_05026372.1| Phospholipase D active site motif domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180334|gb|EDX75325.1| Phospholipase D active site motif domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 542

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKI 603
           F  +  ++ ++ + L ++ GI  K+A +I
Sbjct: 479 FRGIVNLNTATQDELETLPGIGPKLAERI 507


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I GI   G      LL+ FG+V+ +       L +I  +S KI   I
Sbjct: 187 DNIPGIPNIGEKTAIKLLKEFGSVENL-------LENISKLSGKIKETI 228


>gi|125973745|ref|YP_001037655.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Clostridium thermocellum ATCC 27405]
 gi|256005749|ref|ZP_05430703.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium thermocellum DSM 2360]
 gi|281417902|ref|ZP_06248922.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium thermocellum JW20]
 gi|125713970|gb|ABN52462.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium thermocellum ATCC 27405]
 gi|255990283|gb|EEU00411.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium thermocellum DSM 2360]
 gi|281409304|gb|EFB39562.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium thermocellum JW20]
 gi|316940060|gb|ADU74094.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium thermocellum DSM 1313]
          Length = 296

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 14/58 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LD + GIGP     ++        F ++        E + ++ GI +     I +  
Sbjct: 244 ELDSLPGIGPAIAAKIVAYREQNGKFKSI--------EDIMNVSGIGQSKFNNIKDFI 293


>gi|78222110|ref|YP_383857.1| SMF protein [Geobacter metallireducens GS-15]
 gi|78193365|gb|ABB31132.1| DNA protecting protein DprA [Geobacter metallireducens GS-15]
          Length = 358

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            L  +  +G +  R LL+ FG+ + +  +S   L S++G+S      +      +  H 
Sbjct: 8   ALKSVPLVGNVLFRRLLERFGSPEAVFGASDVDLRSVKGVSPA----VVASLRSHDPHP 62


>gi|262198909|ref|YP_003270118.1| helicase, RecD/TraA family [Haliangium ochraceum DSM 14365]
 gi|262082256|gb|ACY18225.1| helicase, RecD/TraA family [Haliangium ochraceum DSM 14365]
          Length = 768

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 562 GIGPLRKRLLLQSFGTVKM---ISRSSPETLASIEGISKKIACKIYNH 606
           GIGP   + +++ FG ++    I ++ P+ L  ++GI    A KI   
Sbjct: 132 GIGPELAKRIVEHFG-LEALSVIEKA-PKRLQEVDGIGAARAEKIAEA 177


>gi|229175136|ref|ZP_04302652.1| DNA repair protein radC [Bacillus cereus MM3]
 gi|228608272|gb|EEK65578.1| DNA repair protein radC [Bacillus cereus MM3]
          Length = 223

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 65  KILHHFDGLRMLKDATLEELVSIHGVGIAKAAQLIAAF 102


>gi|227514790|ref|ZP_03944839.1| competence protein EA [Lactobacillus fermentum ATCC 14931]
 gi|227086838|gb|EEI22150.1| competence protein EA [Lactobacillus fermentum ATCC 14931]
          Length = 222

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L  I+GIG  +   ++      G  K     + E L +++G   K   KI +  
Sbjct: 167 ATKEQLQTIDGIGDKKADKIIAYRQEHGGFK-----TVEDLKNVDGFGDKTVAKIKDRL 220


>gi|184155084|ref|YP_001843424.1| competence protein [Lactobacillus fermentum IFO 3956]
 gi|260663628|ref|ZP_05864517.1| competence protein [Lactobacillus fermentum 28-3-CHN]
 gi|183226428|dbj|BAG26944.1| competence protein [Lactobacillus fermentum IFO 3956]
 gi|260551854|gb|EEX24969.1| competence protein [Lactobacillus fermentum 28-3-CHN]
          Length = 224

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L  I+GIG  +   ++      G  K     + E L +++G   K   KI +  
Sbjct: 169 ATKEQLQTIDGIGDKKADKIIAYRQEHGGFK-----TVEDLKNVDGFGDKTVAKIKDRL 222


>gi|91776705|ref|YP_546461.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus
           KT]
 gi|123253965|sp|Q1GYR7|RUVA_METFK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91710692|gb|ABE50620.1| Holliday junction DNA helicase RuvA [Methylobacillus flagellatus
           KT]
          Length = 194

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKIYN 605
           +A +  L ++NG+G      +L   G +V  ++++ + +    L  + GI KK A ++  
Sbjct: 69  RATFRQLLKVNGVGAKSALAILS--GLSVDDLAQAVALQETGLLIKVPGIGKKTAERLLL 126

Query: 606 HFH 608
              
Sbjct: 127 ELK 129


>gi|62736227|ref|YP_227555.1| putative endonuclease [Candida metapsilosis]
 gi|62177739|gb|AAX73030.1| putative endonuclease [Candida metapsilosis]
 gi|170779372|gb|ACB37036.1| hypothetical protein [Candida metapsilosis]
          Length = 373

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 19/96 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKA--YNLQKRIKSYMHSNNHTHRITHMISQINN-------- 57
              G+Y +++   R  Y+G A   NL +R  +++ ++N   + + ++ +  N        
Sbjct: 86  SKSGIYIIINKVSRNYYIGSAQTNNLYRRFHNHLLTSN--RKGSKIVQRAVNKYGLNNFV 143

Query: 58  ---IRF---TVT-CTEVEALLLEANMIKRLKPRFNI 86
              I +    VT   + E L LE + I  L P++NI
Sbjct: 144 FAIIEYYPFIVTNDNKQELLALETSYIGLLLPKYNI 179


>gi|284043148|ref|YP_003393488.1| DNA integrity scanning, DisA, linker region [Conexibacter woesei
           DSM 14684]
 gi|283947369|gb|ADB50113.1| DNA integrity scanning, DisA, linker region [Conexibacter woesei
           DSM 14684]
          Length = 372

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 21/43 (48%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           + ++Q FG ++ +  ++   L +++G+ +  A  I     +  
Sbjct: 319 QRIVQEFGGLEEMLAATDGELETVDGVGEIRAKDIREGLRRQQ 361


>gi|217967860|ref|YP_002353366.1| DNA integrity scanning protein DisA [Dictyoglomus turgidum DSM
           6724]
 gi|217336959|gb|ACK42752.1| protein of unknown function DUF147 [Dictyoglomus turgidum DSM 6724]
          Length = 351

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              ++  FG +  I  SS E L +IEG+ +  A KI    
Sbjct: 303 IEKIVNYFGDLPRILESSFEDLDNIEGVGEVRAKKIREAL 342


>gi|160934210|ref|ZP_02081597.1| hypothetical protein CLOLEP_03081 [Clostridium leptum DSM 753]
 gi|156866883|gb|EDO60255.1| hypothetical protein CLOLEP_03081 [Clostridium leptum DSM 753]
          Length = 251

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           LL+ FG+   +  +  E L   +GI +  A  I   
Sbjct: 52  LLEGFGSFPALLDAPIEELMKYKGIGRGSAITIKLF 87


>gi|90419162|ref|ZP_01227072.1| DNA repair protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90336099|gb|EAS49840.1| DNA repair protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 257

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + L+  FG++  +  + P  L  + G+   +A  I
Sbjct: 81  KALIARFGSLGEVLNAPPRRLTEVPGVKDSVARDI 115


>gi|326383083|ref|ZP_08204772.1| DNA integrity scanning protein DisA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198219|gb|EGD55404.1| DNA integrity scanning protein DisA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 367

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L++ FGT++ +  SS   L S+EGI    A  I    
Sbjct: 318 RLVRHFGTLQSLLASSAADLESVEGIGSIWARHIREGL 355


>gi|299783520|gb|ADJ41518.1| DNA ligase, NAD-dependent [Lactobacillus fermentum CECT 5716]
          Length = 679

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +LL   F +V  +  +   T+++++ I   I   +  +F     H 
Sbjct: 522 GIRHVGAKVAQLLAAEFKSVDALMAADAATISAVDSIGPIIGDAVATYFQNEQVHQ 577


>gi|260662792|ref|ZP_05863686.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
 gi|260552873|gb|EEX25872.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
          Length = 679

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +LL   F +V  +  +   T+++++ I   I   +  +F     H 
Sbjct: 522 GIRHVGAKVAQLLAAEFKSVDALMAADAATISAVDSIGPIIGDAVATYFQNEQVHQ 577


>gi|229093550|ref|ZP_04224652.1| DNA repair protein radC [Bacillus cereus Rock3-42]
 gi|228689880|gb|EEL43685.1| DNA repair protein radC [Bacillus cereus Rock3-42]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGVAKATQLIAAF 87


>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 930

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMI 581
            I GIG    + L+Q FG+V+ I
Sbjct: 194 GIPGIGEKTAKKLVQDFGSVEGI 216


>gi|227515527|ref|ZP_03945576.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
 gi|227086140|gb|EEI21452.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
          Length = 679

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +LL   F +V  +  +   T+++++ I   I   +  +F     H 
Sbjct: 522 GIRHVGAKVAQLLAAEFKSVDALMAADAATISAVDSIGPIIGDAVATYFQNEQVHQ 577


>gi|184155951|ref|YP_001844291.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
 gi|254781353|sp|B2GDS9|DNLJ_LACF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|183227295|dbj|BAG27811.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
          Length = 679

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +LL   F +V  +  +   T+++++ I   I   +  +F     H 
Sbjct: 522 GIRHVGAKVAQLLAAEFKSVDALMAADAATISAVDSIGPIIGDAVATYFQNEQVHQ 577


>gi|313890729|ref|ZP_07824354.1| comEA protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120830|gb|EFR43944.1| comEA protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 194

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 557 LDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L +I GIG  R + ++   +S G  K +     E L  I GI +K   K+ +
Sbjct: 143 LTKIPGIGAKRAKEIIDVRESQGGFKKL-----EDLLKISGIGQKTLEKLKD 189


>gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942]
 gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942]
          Length = 880

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F +V+ +     E++  + G  KK+  K+   
Sbjct: 194 GVPGVGEKTAIKLLKQFHSVEKL----LESIGEVSG--KKLKEKLEEF 235


>gi|306821142|ref|ZP_07454758.1| RecD/TraA family helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550835|gb|EFM38810.1| RecD/TraA family helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 761

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSF--GTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           I G+G    + ++  F   T+++I + +PE L  I+GI  K   KI   +H+
Sbjct: 90  IEGVGEKYAKKIIDIFQEKTLEIIEK-TPEKLLEIDGIGPKKLDKIITSYHE 140


>gi|196039378|ref|ZP_03106684.1| DNA repair protein [Bacillus cereus NVH0597-99]
 gi|196030005|gb|EDX68606.1| DNA repair protein [Bacillus cereus NVH0597-99]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGVAKATQLIAAF 87


>gi|312870465|ref|ZP_07730585.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3]
 gi|311094022|gb|EFQ52346.1| Holliday junction DNA helicase RuvA [Lactobacillus oris PB013-T2-3]
          Length = 197

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     +L      G V  I+ ++   L    GI KK A +I
Sbjct: 68  KRLFMQLINVSGIGPKSALAILANPDHQGLVDAIANNNIGYLTKFPGIGKKTASQI 123


>gi|309805867|ref|ZP_07699902.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b]
 gi|308167776|gb|EFO69920.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 03V1-b]
          Length = 567

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I+ +G    RL+ Q F  +  I   S   L  I+ I + IA  +  +F + +
Sbjct: 408 GIDHVGAKAARLIAQKFHDLNTIRECSIADLMQIDTIGQAIAESMVKYFEQQS 460


>gi|157150014|ref|YP_001450670.1| NAD-dependent DNA ligase LigA [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|190359295|sp|A8AY10|DNLJ_STRGC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|157074808|gb|ABV09491.1| DNA ligase, NAD-dependent [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 652

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 28/52 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +G    R+LL+ F  +  ++++  E + SI+ +   IA  ++++F + 
Sbjct: 502 GIRHVGSKASRILLEKFHDIPSLAQAEQEEIVSIDSLGMVIAKSLHSYFAQE 553



 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I+G+GP     L        V  I R + E L  +E   +K A K+YN    + S++
Sbjct: 436 NISGLGPAVVEKLFAKDLVRDVAGIYRLNIEDLLQLENFKEKSANKLYNAIQASKSNS 493


>gi|325274411|ref|ZP_08140498.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
 gi|324100446|gb|EGB98205.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
          Length = 776

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S G++  + ++ P+ L  +  I  ++A +I+N F
Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574


>gi|313623714|gb|EFR93861.1| ComEA family DNA-binding protein [Listeria innocua FSL J1-023]
          Length = 200

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L ++ GIG  +   +++     + + + + E L ++ GI +K   K+  + 
Sbjct: 144 ATKVDLQQVPGIGDSKATAIIEY-REKEGLFQ-TIEDLKNVTGIGEKTVEKLKEYL 197


>gi|313497885|gb|ADR59251.1| LigA [Pseudomonas putida BIRD-1]
          Length = 776

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S G++  + ++ P+ L  +  I  ++A +I+N F
Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574


>gi|148546832|ref|YP_001266934.1| NAD-dependent DNA ligase LigA [Pseudomonas putida F1]
 gi|190359274|sp|A5W0U0|DNLJ_PSEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|148510890|gb|ABQ77750.1| DNA ligase, NAD-dependent [Pseudomonas putida F1]
          Length = 776

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S G++  + ++ P+ L  +  I  ++A +I+N F
Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574


>gi|167034833|ref|YP_001670064.1| NAD-dependent DNA ligase LigA [Pseudomonas putida GB-1]
 gi|190359275|sp|B0KPX3|DNLJ_PSEPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|166861321|gb|ABY99728.1| DNA ligase, NAD-dependent [Pseudomonas putida GB-1]
          Length = 776

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S G++  + ++ P+ L  +  I  ++A +I+N F
Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574


>gi|170722763|ref|YP_001750451.1| NAD-dependent DNA ligase LigA [Pseudomonas putida W619]
 gi|254781396|sp|B1JC06|DNLJ_PSEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169760766|gb|ACA74082.1| DNA ligase, NAD-dependent [Pseudomonas putida W619]
          Length = 776

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S G++  + ++ P+ L  +  I  ++A +I+N F
Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574


>gi|104780921|ref|YP_607419.1| NAD-dependent DNA ligase LigA [Pseudomonas entomophila L48]
 gi|122985912|sp|Q1ICK0|DNLJ_PSEE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|95109908|emb|CAK14613.1| NAD-dependent DNA ligase [Pseudomonas entomophila L48]
          Length = 784

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S G++  +  + P+ L  +  I  ++A +I+N F
Sbjct: 534 GIPDVGEETAKVLARSLGSLARVQVALPQVLTYLPDIGLEVAHEIHNFF 582



 Score = 40.5 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +I  +GP     L+   GT+  I  +    L     ++ K A  +   F    + 
Sbjct: 625 DIPSVGPTGAEKLVDKLGTLDKIIAADGIDLRQA--LNTKQAEGVREFFRDEANQ 677


>gi|26990965|ref|NP_746390.1| NAD-dependent DNA ligase LigA [Pseudomonas putida KT2440]
 gi|81439923|sp|Q88F25|DNLJ_PSEPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|24985989|gb|AAN69854.1|AE016624_5 DNA ligase, NAD-dependent [Pseudomonas putida KT2440]
          Length = 776

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S G++  + ++ P+ L  +  I  ++A +I+N F
Sbjct: 526 GIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFF 574


>gi|315653834|ref|ZP_07906750.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
 gi|315488530|gb|EFU78176.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
          Length = 672

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I+ +G    RL+ Q F  +  I   S   L  I+ I + IA  +  +F + +
Sbjct: 513 GIDHVGAKAARLIAQKFHDLNTIRECSIADLMQIDTIGQAIAESMVKYFEQQS 565


>gi|313668860|ref|YP_004049144.1| DNA ligase [Neisseria lactamica ST-640]
 gi|313006322|emb|CBN87785.1| putative DNA ligase [Neisseria lactamica 020-06]
          Length = 827

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 592 GIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAHSIAHFFAQAEQQA 647


>gi|309378943|emb|CBX22396.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 827

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 592 GIRHVGERTAKTLAQAFGTLERVRRAPEPILACLPDIGTVVAHSIAHFFAQAEQQA 647


>gi|297380083|gb|ADI34970.1| Holliday junction DNA helicase RuvA [Helicobacter pylori v225d]
          Length = 183

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L +ING+G      +L       F ++        + L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123


>gi|289679601|ref|ZP_06500491.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           FF5]
          Length = 261

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           I  +GP   + L   FGT++ I  +    +     +S+K A  + + F  + +
Sbjct: 103 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQA--LSEKQAKSVRDFFDDSAN 153



 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  +++ + ++ PE L  +  +  ++A +I++ F
Sbjct: 10  GIPDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSFF 58


>gi|146309768|ref|YP_001174842.1| DNA repair protein RadC [Enterobacter sp. 638]
 gi|166918667|sp|A4W511|Y101_ENT38 RecName: Full=UPF0758 protein Ent638_0101
 gi|145316644|gb|ABP58791.1| DNA replication and repair protein RadC [Enterobacter sp. 638]
          Length = 221

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           + LLQ FG++  +  ++ +    +EGI   +A 
Sbjct: 45  QELLQHFGSLHGLLNANLDEFRYVEGIG--LAK 75


>gi|134098839|ref|YP_001104500.1| potential 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|291005803|ref|ZP_06563776.1| 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|133911462|emb|CAM01575.1| potential 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338]
          Length = 305

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           L  + GIG      L+  FG++  +  ++ E
Sbjct: 200 LPGVAGIGEKTAAKLITQFGSLDALLAAAVE 230


>gi|309813094|ref|ZP_07706818.1| 5'-3' exonuclease, SAM domain protein [Dermacoccus sp. Ellin185]
 gi|308432898|gb|EFP56806.1| 5'-3' exonuclease, SAM domain protein [Dermacoccus sp. Ellin185]
          Length = 308

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      L+  FG++  I  +
Sbjct: 203 LPGVAGIGEKTAAALIAEFGSLAAIRDA 230


>gi|309803834|ref|ZP_07697919.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
 gi|312870780|ref|ZP_07730886.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
 gi|312873110|ref|ZP_07733169.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
 gi|308164068|gb|EFO66330.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
 gi|311091343|gb|EFQ49728.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
 gi|311093656|gb|EFQ51994.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
          Length = 672

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I+ +G    RL+ Q F  +  I   S   L  I+ I + IA  +  +F + +
Sbjct: 513 GIDHVGAKAARLIAQKFHDLNTIRECSIADLMQIDTIGQAIAESMVKYFEQQS 565


>gi|24379098|ref|NP_721053.1| putative competence protein [Streptococcus mutans UA159]
 gi|24376999|gb|AAN58359.1|AE014906_5 putative competence protein [Streptococcus mutans UA159]
          Length = 225

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +L           +     S + L +I GI  K   K+ +
Sbjct: 169 ATLADLQTISGIGEKKAQDILDY-------REANGGFKSVDDLKNISGIGDKTFEKLKD 220


>gi|108804357|ref|YP_644294.1| competence protein ComEA helix-hairpin-helix region [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765600|gb|ABG04482.1| Competence protein ComEA helix-hairpin-helix region [Rubrobacter
           xylanophilus DSM 9941]
          Length = 107

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 12/53 (22%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKI 603
            L+E+  +GP     +++          +     + E L  + GI      +I
Sbjct: 56  ELEELPEVGPATAEAIIEY-------RLANGPFRTVEELEEVPGIGPATLEQI 101


>gi|325922731|ref|ZP_08184469.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas gardneri ATCC 19865]
 gi|325546798|gb|EGD17914.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas gardneri ATCC 19865]
          Length = 328

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IG     +LL  FG++  +     + L
Sbjct: 202 DNIPGVTGIGAKSAAILLAHFGSLDALLE-RVDEL 235


>gi|313895725|ref|ZP_07829281.1| helicase, RecD/TraA family [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975851|gb|EFR41310.1| helicase, RecD/TraA family [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 724

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I+G+GP   R ++  FG  +  +I  + P  L  + GI  K   KI
Sbjct: 101 IDGVGPAMARRIVDRFGAKSFAIIETA-PHRLKEVPGIGAKTLKKI 145


>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
 gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
          Length = 889

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            + GIGP     L+Q FG+++ +     ET+  
Sbjct: 187 GVPGIGPKTAIALIQEFGSLEGVYE-GVETITK 218


>gi|160902691|ref|YP_001568272.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Petrotoga mobilis SJ95]
 gi|160360335|gb|ABX31949.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Petrotoga mobilis SJ95]
          Length = 171

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 39/90 (43%)

Query: 556 PLDEINGIGPLRKRLLLQS----------------------FGTVK-------------- 579
            L  + GIGP + + ++                        F  +K              
Sbjct: 51  ELIRLPGIGPAKAQAIINYRQEKGFREIEDIMNVSGIGEKTFSNIKDYIYLSEVIYEIVD 110

Query: 580 ---MISRSSPETLASIEGISKKIACKIYNH 606
               I+ +S E L S+ GI K  A KI  +
Sbjct: 111 EKININEASSEELESLPGIGKVSAQKIIEY 140


>gi|71282215|ref|YP_270212.1| exonuclease IX [Colwellia psychrerythraea 34H]
 gi|123631612|sp|Q47YA8|XNI_COLP3 RecName: Full=Protein Xni
 gi|71147955|gb|AAZ28428.1| exodeoxyribonuclease IX [Colwellia psychrerythraea 34H]
          Length = 290

 Score = 41.2 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + ++ ++GIG +    LL  +G++K I  ++   L         +A K+    
Sbjct: 197 TNKIEGVSGIGQVTAAKLLNQYGSLKAILEAT--DLK------DSLAEKLTQSL 242


>gi|291514827|emb|CBK64037.1| DNA protecting protein DprA [Alistipes shahii WAL 8301]
          Length = 366

 Score = 40.9 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            GIG      LL+ FG  + I  ++ + L +  G+    A +I
Sbjct: 12  PGIGIKGAVHLLELFGDARSIFAATADELVAKAGLRPDTAQQI 54


>gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122]
 gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122]
          Length = 905

 Score = 40.9 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            + GIGP     LLQ++G++  I +
Sbjct: 193 GVPGIGPKTATKLLQAYGSMDGIYK 217


>gi|218905656|ref|YP_002453490.1| DNA repair protein [Bacillus cereus AH820]
 gi|218538266|gb|ACK90664.1| DNA repair protein [Bacillus cereus AH820]
          Length = 186

 Score = 40.9 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87


>gi|15645501|ref|NP_207676.1| Holliday junction DNA helicase RuvA [Helicobacter pylori 26695]
 gi|3122834|sp|O25549|RUVA_HELPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|2314020|gb|AAD07932.1| Holliday junction DNA helicase (ruvA) [Helicobacter pylori 26695]
          Length = 183

 Score = 40.9 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L +ING+G      +L       F ++        + L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123


>gi|330800435|ref|XP_003288242.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum]
 gi|325081750|gb|EGC35255.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum]
          Length = 835

 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 549 RKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRS-SPETLASIEGISKKIACKIYN 605
           + +   S L    I GIG    ++L Q F  +  +  + S +++ +   + ++ +  IYN
Sbjct: 643 KSRGLSSLLCGMGIPGIGRANSKILAQKFQHLDNLINAPSIQSIENQSKLGRQTSEAIYN 702

Query: 606 HFHK 609
           +F+ 
Sbjct: 703 YFNP 706


>gi|227523032|ref|ZP_03953081.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227089850|gb|EEI25162.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 675

 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    RL+ Q F  +  +  ++ + +A I+ +   IA  +  +F
Sbjct: 516 GIRHVGAKAARLIAQRFKNIDKVMDATAQEIAEIDTMGMIIADSVVTYF 564


>gi|227512904|ref|ZP_03942953.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083904|gb|EEI19216.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
          Length = 675

 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    RL+ Q F  +  +  ++ + +A I+ +   IA  +  +F
Sbjct: 516 GIRHVGAKAARLIAQRFKNIDKVMDATAQEIAEIDTMGMIIADSVVTYF 564


>gi|114569594|ref|YP_756274.1| DNA repair protein RadC [Maricaulis maris MCS10]
 gi|114340056|gb|ABI65336.1| DNA repair protein RadC [Maricaulis maris MCS10]
          Length = 226

 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 26/79 (32%)

Query: 543 TTHRKRRKKAAYS---------PLDE------INGIGPLRK------RLLLQSFGTVKMI 581
           T HR R ++   S          L E      I      R+      + L+  FG +  +
Sbjct: 8   TGHRDRLREKLTSAGGLALHDYELLELYLFRCIP-----RRDVKPIAKDLIARFGDLGGV 62

Query: 582 SRSSPETLASIEGISKKIA 600
           + +S   L+S+ G+S+K A
Sbjct: 63  ASASVGQLSSVRGVSEKTA 81


>gi|86138472|ref|ZP_01057046.1| hypothetical protein MED193_05191 [Roseobacter sp. MED193]
 gi|85824997|gb|EAQ45198.1| hypothetical protein MED193_05191 [Roseobacter sp. MED193]
          Length = 240

 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 562 GIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606
           G+GP   + L    G  TV+ ++ +  E L +I GI    A ++   
Sbjct: 9   GVGPALAKTLKDH-GLLTVEAVAAAPLEDLKAIPGIGAARAMRLKQA 54


>gi|269215626|ref|ZP_06159480.1| competence protein [Slackia exigua ATCC 700122]
 gi|269131113|gb|EEZ62188.1| competence protein [Slackia exigua ATCC 700122]
          Length = 258

 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISR----SSPETLASIEGISKKIACKIYNHF 607
            LD I G+GP   R +      V+   +    SS + +  +EGI KK   ++ +  
Sbjct: 207 ALDRIPGVGPATARAI------VEEREKSGPFSSVDDITRVEGIGKKKLERMRDSL 256


>gi|290580890|ref|YP_003485282.1| putative competence protein [Streptococcus mutans NN2025]
 gi|254997789|dbj|BAH88390.1| putative competence protein [Streptococcus mutans NN2025]
          Length = 226

 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           A  + L  I+GIG  + + +L           +     S + L +I GI  K   K+ +
Sbjct: 170 ATLADLQTISGIGEKKAQDILDY-------REANGGFKSVDDLKNISGIGDKTFEKLKD 221


>gi|229553780|ref|ZP_04442505.1| crossover junction endoribonuclease subunit A [Lactobacillus
           rhamnosus LMS2-1]
 gi|229312854|gb|EEN78827.1| crossover junction endoribonuclease subunit A [Lactobacillus
           rhamnosus LMS2-1]
          Length = 212

 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           K  ++ L  + GIGP     +L +  +      I++   + L    GI KK A +I
Sbjct: 80  KRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQI 135


>gi|206895219|ref|YP_002247779.1| DNA repair protein [Coprothermobacter proteolyticus DSM 5265]
 gi|229485550|sp|B5Y6A0|Y1522_COPPD RecName: Full=UPF0758 protein COPRO5265_1522
 gi|206737836|gb|ACI16914.1| DNA repair protein [Coprothermobacter proteolyticus DSM 5265]
          Length = 235

 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS 596
           R LL +FG    + R+S E L  I+G+ 
Sbjct: 55  RRLLNTFGGFTGLYRASVEELLQIKGMG 82


>gi|199598072|ref|ZP_03211495.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           rhamnosus HN001]
 gi|258507747|ref|YP_003170498.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
 gi|258538937|ref|YP_003173436.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc
           705]
 gi|84627155|gb|ABC59820.1| RuvA [Lactobacillus rhamnosus GG]
 gi|199590998|gb|EDY99081.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           rhamnosus HN001]
 gi|257147674|emb|CAR86647.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
 gi|257150613|emb|CAR89585.1| Holliday junction DNA helicase RuvA [Lactobacillus rhamnosus Lc
           705]
 gi|259649095|dbj|BAI41257.1| holliday junction DNA helicase RuvA [Lactobacillus rhamnosus GG]
          Length = 198

 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           K  ++ L  + GIGP     +L +  +      I++   + L    GI KK A +I
Sbjct: 66  KRTFNQLLSVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQI 121


>gi|117923573|ref|YP_864190.1| DNA repair protein RadC [Magnetococcus sp. MC-1]
 gi|117607329|gb|ABK42784.1| DNA repair protein RadC [Magnetococcus sp. MC-1]
          Length = 241

 Score = 40.9 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+Q FG++  +  + P  LA++EG+ +  A  I
Sbjct: 59  RLMQRFGSLSAVMEADPVDLATVEGMGETAALFI 92


>gi|332671254|ref|YP_004454262.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484]
 gi|332340292|gb|AEE46875.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484]
          Length = 834

 Score = 40.9 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR-------SSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L Q F ++  +         ++ E L+ ++G+   IA  + + F
Sbjct: 627 SIRNVGPTAARALAQEFRSMAALREVVEGDPVAAAERLSGVDGVGPTIAQSLVDWF 682


>gi|297154346|gb|ADI04058.1| PHP domain protein [Streptomyces bingchenggensis BCW-1]
          Length = 580

 Score = 40.9 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 20/82 (24%)

Query: 541 AITTH-RKRRKKAAYSPLD-----EINGIGPLRKRLLLQSF--GTV---KMISRS---SP 586
           AI  H R        S LD     EI G+G      +++    G+V     +  +     
Sbjct: 38  AIGGHPR------DVSELDAKGLREIPGVGKSIADKVVEYLRTGSVPAVDEVRAAIPAGV 91

Query: 587 ETLASIEGISKKIACKIYNHFH 608
             L +I  +  K A  +Y   H
Sbjct: 92  RQLTAIPALGPKKAMLLYEELH 113


>gi|284101344|ref|ZP_06386017.1| DNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283830358|gb|EFC34584.1| DNA-binding protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 241

 Score = 40.9 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKIYNHF-H-KNTSHTP 615
           + F T+  ++ ++   L +++G+ K  A  I N   H K+TS  P
Sbjct: 188 RKFKTLDRVNTAAVGELQAVDGVGKARASTIKNTLAHMKSTSVQP 232


>gi|196248984|ref|ZP_03147684.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. G11MC16]
 gi|196211860|gb|EDY06619.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. G11MC16]
          Length = 203

 Score = 40.9 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L ++ GIGP + + ++      G  + +     E L  + GI +K   K+  + 
Sbjct: 151 ELMQVPGIGPAKAKAIIAYREEHGPFQRV-----EDLLRVNGIGEKTLEKLKPYL 200



 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++ ++ E L  + GI    A  I  +
Sbjct: 143 AVNTATAEELMQVPGIGPAKAKAIIAY 169


>gi|138896090|ref|YP_001126543.1| late competence protein ComEA [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267603|gb|ABO67798.1| Late competence protein ComEA [Geobacillus thermodenitrificans
           NG80-2]
          Length = 203

 Score = 40.9 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L ++ GIGP + + ++      G  + +     E L  + GI +K   K+  + 
Sbjct: 151 ELMQVPGIGPAKAKAIIAYREEHGPFQRV-----EDLLRVNGIGEKTLEKLKPYL 200



 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++ ++ E L  + GI    A  I  +
Sbjct: 143 AVNTATAEELMQVPGIGPAKAKAIIAY 169


>gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
 gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
          Length = 920

 Score = 40.9 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IG      LL ++G ++ I  +S + L 
Sbjct: 152 DNIPGVKGIGKKTAVKLLDTYGDLETIY-ASIDELK 186


>gi|194017433|ref|ZP_03056044.1| DNA integrity scanning protein [Bacillus pumilus ATCC 7061]
 gi|194010705|gb|EDW20276.1| DNA integrity scanning protein [Bacillus pumilus ATCC 7061]
          Length = 359

 Score = 40.9 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG +  I  +  + L  +EGI +  A KI     +
Sbjct: 314 FGVLDRIMEADVQDLDEVEGIGEVRAKKIKKGLKR 348


>gi|167464420|ref|ZP_02329509.1| late competence protein (DNA binding and uptake) [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384960|ref|ZP_08058616.1| membrane bound high-affinity DNA-binding receptor-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321150257|gb|EFX43764.1| membrane bound high-affinity DNA-binding receptor-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 177

 Score = 40.9 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKK-IACKI-YNH 606
           A    L E+ GIG  + + +L      GT + I       L  ++GI +K +A  I Y  
Sbjct: 120 ATEQQLIELPGIGKSKAKAILAYRQQKGTFRSIR-----ELLEVKGIGEKMLAKLIPYMR 174

Query: 607 FHK 609
            + 
Sbjct: 175 LNN 177


>gi|160915318|ref|ZP_02077531.1| hypothetical protein EUBDOL_01327 [Eubacterium dolichum DSM 3991]
 gi|158433117|gb|EDP11406.1| hypothetical protein EUBDOL_01327 [Eubacterium dolichum DSM 3991]
          Length = 155

 Score = 40.9 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 13/54 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIY 604
            LDE+ G+GP   + ++       F T+        E L +++GI  ++  KI 
Sbjct: 105 ELDELKGVGPSIAQRIIDYRNQQPFKTL--------EELKNVKGIGDRMFEKIK 150


>gi|317012687|gb|ADU83295.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           Lithuania75]
          Length = 183

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L +ING+G      +L       F ++        + L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123


>gi|229186695|ref|ZP_04313854.1| DNA repair protein radC [Bacillus cereus BGSC 6E1]
 gi|228596798|gb|EEK54459.1| DNA repair protein radC [Bacillus cereus BGSC 6E1]
          Length = 225

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87


>gi|212703192|ref|ZP_03311320.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
 gi|212673458|gb|EEB33941.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
          Length = 729

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
              S L  I  +G    R+L   F  +  ++ +  + L  +  +  ++A  I + F
Sbjct: 565 RLISAL-GIRHVGEQTARMLAAHFYDMDALAAADTQRLLELPDVGPEVASSIRSFF 619


>gi|183985054|ref|YP_001853345.1| putative RuvA-like protein [Mycobacterium marinum M]
 gi|183178380|gb|ACC43490.1| conserved hypothetical RuvA-like protein [Mycobacterium marinum M]
          Length = 358

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L+++FG+++ +  +S   L S+EGI    A  +     +    T
Sbjct: 311 LVRAFGSLQGLLAASASDLQSVEGIGATWAPHVREGLSQLAEST 354


>gi|196044826|ref|ZP_03112060.1| DNA repair protein [Bacillus cereus 03BB108]
 gi|196024314|gb|EDX62987.1| DNA repair protein [Bacillus cereus 03BB108]
          Length = 192

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87


>gi|126465121|ref|YP_001040230.1| DEAD/DEAH box helicase domain-containing protein [Staphylothermus
           marinus F1]
 gi|126013944|gb|ABN69322.1| DEAD/DEAH box helicase domain protein [Staphylothermus marinus F1]
          Length = 716

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L E+ GIG +R R L++    ++K ++ + P  + S+ G   ++   +Y    +
Sbjct: 658 ELVELQGIGRVRARTLIKHGIKSLKDLASTPPSKIESLPGFGSRLVRSLYEQLRE 712


>gi|170727191|ref|YP_001761217.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
 gi|254781418|sp|B1KJT5|DNLJ_SHEWM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|169812538|gb|ACA87122.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
          Length = 670

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 550 KKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K   +S       I  +G      L   F T+  +  +  E+   ++ +   +A  + + 
Sbjct: 503 KTTTFSRFLYGLGIREVGEATAANLANYFKTLDKLKAADAESFIKVDDVGTIVAQHLTHF 562

Query: 607 F 607
           F
Sbjct: 563 F 563


>gi|321252528|ref|XP_003192437.1| exonuclease [Cryptococcus gattii WM276]
 gi|317458905|gb|ADV20650.1| Exonuclease, putative [Cryptococcus gattii WM276]
          Length = 1015

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISR 583
           LD I GIG      L++ F +V+ + +
Sbjct: 231 LDSIPGIGIKTAHRLMRRFNSVEKLLQ 257


>gi|289432483|ref|YP_003462356.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
 gi|288946203|gb|ADC73900.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
          Length = 680

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G     LL + +G +  ++++    L +I  I  KIA  I  +F +  +
Sbjct: 530 VGNETATLLSRHYGNIWALAKTGLGELQTIPDIGDKIASSIVAYFSEEKN 579


>gi|217032932|ref|ZP_03438407.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128]
 gi|298736165|ref|YP_003728691.1| Holliday junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori B8]
 gi|216945342|gb|EEC24014.1| hypothetical protein HPB128_147g5 [Helicobacter pylori B128]
 gi|298355355|emb|CBI66227.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pylori B8]
          Length = 183

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L +ING+G      +L       F ++        + L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKKLQQVPGIGKKLADKI 123


>gi|206901500|ref|YP_002250825.1| ComEA protein [Dictyoglomus thermophilum H-6-12]
 gi|206740603|gb|ACI19661.1| ComEA protein [Dictyoglomus thermophilum H-6-12]
          Length = 184

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S E L S+ GI   +A +I  +
Sbjct: 125 NINTASKEELESLPGIGPTLAQRIIEY 151



 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L+ + GIGP   + +++       F +         E L +++GI +K   KI +
Sbjct: 129 ASKEELESLPGIGPTLAQRIIEYREENGVFTSA--------EDLLNVKGIGEKKLEKIKD 180


>gi|190895188|ref|YP_001985481.1| hypothetical protein RHECIAT_PC0000861 [Rhizobium etli CIAT 652]
 gi|190700849|gb|ACE94931.1| hypothetical protein RHECIAT_PC0000861 [Rhizobium etli CIAT 652]
          Length = 113

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 6  MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH 44
          +P+  G Y +    G VLYVG   NL++ +  ++ +   
Sbjct: 57 IPDSSGCYVLTSFDGNVLYVGLTKNLKRGMAQHLDNREK 95


>gi|91774671|ref|YP_544427.1| DNA repair protein RadC [Methylobacillus flagellatus KT]
 gi|122985645|sp|Q1H4K1|Y315_METFK RecName: Full=UPF0758 protein Mfla_0315
 gi|91708658|gb|ABE48586.1| DNA replication and repair protein RadC [Methylobacillus
           flagellatus KT]
          Length = 224

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS 596
           R LL+ F ++  I  +S E +  + G+ 
Sbjct: 48  RELLKRFSSLNGIFAASAEEICQVHGMG 75


>gi|73748436|ref|YP_307675.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
 gi|123759761|sp|Q3ZX08|DNLJ_DEHSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|73660152|emb|CAI82759.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
          Length = 677

 Score = 40.9 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G     LL + +G +  ++++    L +I  I  KIA  I  +F +  +
Sbjct: 527 VGNETATLLSRHYGNIWALAKTGLGELQTIPDIGDKIASSIVAYFSEEKN 576


>gi|313905039|ref|ZP_07838409.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Eubacterium cellulosolvens 6]
 gi|313470109|gb|EFR65441.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Eubacterium cellulosolvens 6]
          Length = 247

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 14/58 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L  + GIG  R   +++       F  +        E + +I GI +K   KI ++ 
Sbjct: 196 ELQTLPGIGEARAEAIIRYREEHGRFSGI--------EEIQNISGIKQKAFEKIKDYI 245


>gi|291545736|emb|CBL18844.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Ruminococcus sp. SR1/5]
          Length = 225

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 559 EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  IG    +++ + F   +  I  +S E ++ I+ I   IA  +  +F    + 
Sbjct: 70  GIANIGLANAKVICRHFDNDLDRIRHASLEEVSDIDTIGPVIAGNLVAYFRDEDND 125


>gi|241759788|ref|ZP_04757888.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
 gi|241319796|gb|EER56192.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
          Length = 859

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +G    + L Q+FGT++ +  +    LA +  I   +A  I + F +     
Sbjct: 628 VGERTAKTLAQAFGTLENVRHAPEPILACLPDIGTVVARSIAHFFAQKAQQA 679


>gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271]
 gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271]
          Length = 891

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIEQVSG--KKLKEKL 244


>gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42]
 gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42]
          Length = 879

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F +V+ +   S + ++      KK+  K+  +
Sbjct: 194 GVPGVGEKTAIKLLKQFHSVEKLLD-SIDEVS-----GKKLKEKLEEY 235


>gi|147669216|ref|YP_001214034.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
 gi|190359250|sp|A5FRL4|DNLJ_DEHSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146270164|gb|ABQ17156.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
          Length = 680

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G     LL + +G +  ++++    L +I  I  KIA  I  +F +  +
Sbjct: 530 VGNETATLLSRHYGNIWALAKTGLGELQTIPDIGDKIASSIVAYFSEEKN 579


>gi|325267123|ref|ZP_08133791.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella
           denitrificans ATCC 33394]
 gi|324981361|gb|EGC17005.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella
           denitrificans ATCC 33394]
          Length = 194

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACK 602
           +A +  L +++GIG      +L +  +    + +++   + L+S+ GI KK A +
Sbjct: 69  RATFRQLIKVSGIGAKTALGILSALSSDELAQAVAQEDVKRLSSVPGIGKKTAER 123


>gi|270263452|ref|ZP_06191721.1| DNA polymerase IV [Serratia odorifera 4Rx13]
 gi|270042336|gb|EFA15431.1| DNA polymerase IV [Serratia odorifera 4Rx13]
          Length = 353

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL +I G+G +  +                    LL+ FG    +             SP
Sbjct: 177 PLSKIPGVGKVTAKRLEEVGLITCADVQQYDLALLLKRFGKFGRVLWERCQGIDLREVSP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           E L    G+ + +A  I++ 
Sbjct: 237 ERLRKSVGVERTLAEDIHDW 256


>gi|257068898|ref|YP_003155153.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Brachybacterium faecium DSM 4810]
 gi|256559716|gb|ACU85563.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Brachybacterium faecium DSM 4810]
          Length = 279

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 14/54 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603
            L+E+ G+GP   + +L+       F +V          L  + GI      KI
Sbjct: 228 ELEELPGVGPAIAQRILEHREKNGAFTSVDG--------LLEVSGIGPATLEKI 273


>gi|161485980|ref|NP_737948.2| NAD-dependent DNA ligase LigA [Corynebacterium efficiens YS-314]
 gi|259506289|ref|ZP_05749191.1| DNA ligase [Corynebacterium efficiens YS-314]
 gi|259166069|gb|EEW50623.1| DNA ligase [Corynebacterium efficiens YS-314]
          Length = 678

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   + +++ +  +  + LA  +G+   IA    + F
Sbjct: 523 SIRHVGPTAARALAGRYRSMQKLVDAPVDELAETDGVGMIIAQSFKDWF 571


>gi|160881055|ref|YP_001560023.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg]
 gi|190359247|sp|A9KPL0|DNLJ_CLOPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160429721|gb|ABX43284.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg]
          Length = 653

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            K  YS    I  +G    +L+ + FG     +S ++ + L  I  I   IA    ++F 
Sbjct: 490 AKFIYS--LGIANVGLANAKLICKEFGYDFNKVSNATVDELTQIPQIGYVIAEAFVSYFQ 547

Query: 609 KNTS 612
           K  +
Sbjct: 548 KPEN 551


>gi|81749525|sp|Q8FPZ7|DNLJ_COREF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|23493177|dbj|BAC18148.1| putative DNA ligase [Corynebacterium efficiens YS-314]
          Length = 938

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   R L   + +++ +  +  + LA  +G+   IA    + F
Sbjct: 783 SIRHVGPTAARALAGRYRSMQKLVDAPVDELAETDGVGMIIAQSFKDWF 831


>gi|317126214|ref|YP_004100326.1| excinuclease ABC subunit C [Intrasporangium calvum DSM 43043]
 gi|315590302|gb|ADU49599.1| Excinuclease ABC C subunit domain protein [Intrasporangium calvum
          DSM 43043]
          Length = 273

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)

Query: 5  QMPEC----PGVYQMLDIAGRVLYVGKAYNLQKRIKSY 38
          ++PE     PGVY ++D     LYVG++ +L+ RI  +
Sbjct: 40 RLPESEWTVPGVYVLIDDTLHRLYVGRSTDLRTRILQH 77


>gi|271967135|ref|YP_003341331.1| DNA polymerase I [Streptosporangium roseum DSM 43021]
 gi|270510310|gb|ACZ88588.1| DNA polymerase I [Streptosporangium roseum DSM 43021]
          Length = 306

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           L  + G+G      L+  FG+++ + R+  + 
Sbjct: 199 LPGVPGVGDKTAAALITRFGSLEALLRA-VDE 229


>gi|160914436|ref|ZP_02076651.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991]
 gi|158433594|gb|EDP11883.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991]
          Length = 664

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    R+L +++G +  +  +    L +I+ I    A  I  +F +
Sbjct: 512 VGKKAARVLAKTYGNIDDLMAAEEAELTAIKDIGVVTAQSIRAYFAE 558


>gi|331673596|ref|ZP_08374359.1| putative chaperonin [Escherichia coli TA280]
 gi|331068869|gb|EGI40261.1| putative chaperonin [Escherichia coli TA280]
          Length = 648

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK        ++      E      RD     +  L+D A           R++     
Sbjct: 473 IAKRTMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 512

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 513 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 568

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 569 ASCERRFVFRPNEAVTP 585


>gi|323187786|gb|EFZ73084.1| hypothetical protein ECRN5871_3973 [Escherichia coli RN587/1]
          Length = 646

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK        ++      E      RD     +  L+D A           R++     
Sbjct: 471 IAKRTMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 510

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 566

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 567 ASCERRFVFRPNEAVTP 583


>gi|319406256|emb|CBI79893.1| holliday junction DNA helicase RuvA [Bartonella sp. AR 15-3]
          Length = 214

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 27/118 (22%)

Query: 509 KFFVKKGEALVLNMRDPILYFI--QRLRDEAHR---FAITTHRKRRKKAAYSP------L 557
             F+       L      L       +R+EA R   FA             S       L
Sbjct: 27  IIFIPNRLHSSLPAIGESLSLFIETHVREEAIRLFGFA-----------TKSEQEWFCLL 75

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACKIYNHFHKNT 611
             + G+G      +L S  +V  +S++ +      ++   G+ KK++ +I +     T
Sbjct: 76  QNVPGVGAKVALAILGSL-SVSELSQAITLNDTAMISRAPGVGKKVSERIVSELKSKT 132


>gi|303241827|ref|ZP_07328322.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Acetivibrio cellulolyticus CD2]
 gi|302590602|gb|EFL60355.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Acetivibrio cellulolyticus CD2]
          Length = 256

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A  + LD + G+GP     ++  F    G  K I     E + ++ GI +     + +  
Sbjct: 200 ATEAELDTLPGVGPSTASKIVS-FREKSGNFKKI-----EDIMNVPGIGESKFENMKDFI 253


>gi|284922064|emb|CBG35143.1| conserved hypothetical protein [Escherichia coli 042]
          Length = 648

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK        ++      E      RD     +  L+D A           R++     
Sbjct: 473 IAKRTMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 512

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 513 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 568

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 569 ASCERRFVFRPNEAVTP 585


>gi|212691962|ref|ZP_03300090.1| hypothetical protein BACDOR_01457 [Bacteroides dorei DSM 17855]
 gi|212665354|gb|EEB25926.1| hypothetical protein BACDOR_01457 [Bacteroides dorei DSM 17855]
          Length = 168

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 20/100 (20%)

Query: 5   QMPECPGVYQ---MLDI------AGRVLYVGKAYNLQKRIKSY-----------MHSNNH 44
            +P  PGVY                +V+Y+GK  N+Q+R+K +            +   H
Sbjct: 52  DLPSKPGVYIIVSFKTKFIYPIGQSKVIYIGKTDNIQRRLKEHQRNLINAINDRFNECWH 111

Query: 45  THRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRF 84
             R  +M      + +       E+  LE+++I+    R+
Sbjct: 112 LDRYNYMRYHGAKVYYYTCRGYQESKDLESSIIESFYDRY 151


>gi|170681285|ref|YP_001743069.1| hypothetical protein EcSMS35_0990 [Escherichia coli SMS-3-5]
 gi|170519003|gb|ACB17181.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
          Length = 648

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK        ++      E      RD     +  L+D A           R++     
Sbjct: 473 IAKRTMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 512

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 513 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 568

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 569 ASCERRFVFRPNEAVTP 585


>gi|149928191|ref|ZP_01916436.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
 gi|149823082|gb|EDM82322.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
          Length = 597

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 17/59 (28%)

Query: 551 KAAYSPLDEIN--------------GI---GPLRKRLLLQSFGTVKMISRSSPETLASI 592
           K+A + LD I+              GI   G    R L   F  V+ +  +S E L  +
Sbjct: 513 KSARNLLDSIDKAKQTTFGRFLFGLGIRHVGEATARDLAAYFKNVERLMNASEEELLEV 571


>gi|71909499|ref|YP_287086.1| competence protein ComEA helix-hairpin-helix region [Dechloromonas
           aromatica RCB]
 gi|71849120|gb|AAZ48616.1| Competence protein ComEA helix-hairpin-helix region [Dechloromonas
           aromatica RCB]
          Length = 105

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    LD + GIGP + + ++      G+ K     S + L  ++G  +K   K+ +  
Sbjct: 39  ATVDELDGVKGIGPSKAKAIVDYRTKNGSFK-----SVDDLKGVKGFGEKSIAKLRSEL 92


>gi|82617156|emb|CAI64063.1| DNA repair and recombination protein [uncultured archaeon]
 gi|82617268|emb|CAI64174.1| DNA repair and recombination protein [uncultured archaeon]
 gi|268323001|emb|CBH36589.1| DNA repair and recombination protein radA [uncultured archaeon]
          Length = 315

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           +E+ G+GP     L ++ + +++ I+ +SP  L +   I +  + KI N
Sbjct: 4   EELPGVGPAIAEKLREAGYNSLEAIAVASPAELVAAAEIGEATSAKIIN 52


>gi|54296979|ref|YP_123348.1| DNA ligase [Legionella pneumophila str. Paris]
 gi|81370862|sp|Q5X6E6|DNLJ_LEGPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|53750764|emb|CAH12171.1| DNA ligase [Legionella pneumophila str. Paris]
          Length = 673

 Score = 40.9 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 14/74 (18%)

Query: 548 RRKKAAYSPLDE--------------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +  K   S L++              I  IG    R+L + +  V+ +  ++ E L ++ 
Sbjct: 494 KSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKSATIEELMTLN 553

Query: 594 GISKKIACKIYNHF 607
            I    A  + + F
Sbjct: 554 DIGPVAASHVVHFF 567


>gi|307245098|ref|ZP_07527191.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254053|ref|ZP_07535900.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258509|ref|ZP_07540246.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853987|gb|EFM86199.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862978|gb|EFM94925.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867413|gb|EFM99264.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 201

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET 588
           +R++AH    FA     +++ +  +  L + NG+GP     +L +  +V   + +   E 
Sbjct: 53  VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVSQFANAVEHEE 106

Query: 589 LAS---IEGISKKIACKIYNHFH 608
           LA    I GI +K A ++     
Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129


>gi|259507870|ref|ZP_05750770.1| DNA uptake protein [Corynebacterium efficiens YS-314]
 gi|259164663|gb|EEW49217.1| DNA uptake protein [Corynebacterium efficiens YS-314]
          Length = 237

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 12/57 (21%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS-----PETLASIEGISKKIACKI 603
           A  + L  + G+G    + ++Q          ++      + L  ++GI      +I
Sbjct: 182 ATAAELQTLPGVGEKTAQAIIQH-------REANGGFSAVDDLLEVKGIGPSKFAQI 231


>gi|227509971|ref|ZP_03940020.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190577|gb|EEI70644.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 675

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    RL+ Q F  +  +  ++ + +A I+ +   IA  +  +F
Sbjct: 516 GIRHVGAKAARLIAQRFKNIDKVMDATAQEIAEIDTMGMIIADSVVTYF 564


>gi|25028805|ref|NP_738859.1| hypothetical protein CE2249 [Corynebacterium efficiens YS-314]
 gi|23494091|dbj|BAC19059.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 255

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 12/57 (21%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS-----PETLASIEGISKKIACKI 603
           A  + L  + G+G    + ++Q          ++      + L  ++GI      +I
Sbjct: 200 ATAAELQTLPGVGEKTAQAIIQH-------REANGGFSAVDDLLEVKGIGPSKFAQI 249


>gi|157690871|ref|YP_001485333.1| DNA integrity scanning protein DisA [Bacillus pumilus SAFR-032]
 gi|167016888|sp|A8F956|DISA_BACP2 RecName: Full=DNA integrity scanning protein disA
 gi|157679629|gb|ABV60773.1| DNA integrity scanning protein [Bacillus pumilus SAFR-032]
          Length = 359

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG +  I  +  + L  +EGI +  A KI     +
Sbjct: 314 FGVLDRIMEADVQDLDEVEGIGEVRAKKIKKGLKR 348


>gi|254414029|ref|ZP_05027797.1| helicase, RecD/TraA family [Microcoleus chthonoplastes PCC 7420]
 gi|196179165|gb|EDX74161.1| helicase, RecD/TraA family [Microcoleus chthonoplastes PCC 7420]
          Length = 742

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           K   S L  I G+GP+    ++  FG  T+++I     E L  ++GI+KK    I
Sbjct: 97  KYLGSGL--IKGVGPVTASRIVAHFGLDTLEVIEN-QIERLVEVKGIAKKRIRMI 148


>gi|326791207|ref|YP_004309028.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium lentocellum DSM 5427]
 gi|326541971|gb|ADZ83830.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium lentocellum DSM 5427]
          Length = 235

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           + L  + GIG ++   ++    TV+     S + L  + GI  K 
Sbjct: 183 TELMSLPGIGEVKANAIIDYRKTVRAFG--SIDDLKEVSGIGDKT 225


>gi|255994367|ref|ZP_05427502.1| competence protein CelA [Eubacterium saphenum ATCC 49989]
 gi|255993080|gb|EEU03169.1| competence protein CelA [Eubacterium saphenum ATCC 49989]
          Length = 211

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A  + L  +NGIGP     ++      G  K +     E L  + GI  K   K+   F
Sbjct: 156 ADATKLQTVNGIGPATAEKIIDYRENNGNFKKV-----EDLVKVPGIGPKTVQKLIKEF 209


>gi|153207802|ref|ZP_01946402.1| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii 'MSU Goat Q177']
 gi|161830444|ref|YP_001596464.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Coxiella burnetii RSA 331]
 gi|165923887|ref|ZP_02219719.1| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii RSA 334]
 gi|120576354|gb|EAX32978.1| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii 'MSU Goat Q177']
 gi|161762311|gb|ABX77953.1| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii RSA 331]
 gi|165916672|gb|EDR35276.1| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii RSA 334]
          Length = 113

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 15/60 (25%)

Query: 557 LDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK-IACKIYNHFHK 609
           L  + GIG  + + ++        F +++         L+S+ GIS+K +A  I N+ H+
Sbjct: 57  LTTLKGIGVKKAKAIIAYRKKEGNFKSIEA--------LSSVPGISQKTVARLIRNNPHR 108


>gi|47566644|ref|ZP_00237466.1| DNA repair protein RadC [Bacillus cereus G9241]
 gi|228987706|ref|ZP_04147817.1| DNA repair protein radC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|47556674|gb|EAL15006.1| DNA repair protein RadC [Bacillus cereus G9241]
 gi|228771980|gb|EEM20435.1| DNA repair protein radC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87


>gi|255024355|ref|ZP_05296341.1| UvrABC system protein C (Protein UvrC) (Excinuclease ABC subunit C)
           [Listeria monocytogenes FSL J1-208]
          Length = 163

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 10/160 (6%)

Query: 204 RNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY---NRMDCFSLYHNKNLACIQTCF 260
            +M  AT   ++E A   RD++ A++        I+      D    Y   N   +   F
Sbjct: 1   EDMLTATENLEFERAAELRDKIHAINETIEKQHIIFPGLKNRDIIGCYEQDNHLSVFVFF 60

Query: 261 FHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETSLLEISFF 320
              G   G+       +                  +   P+ +L++E+ ++  L E    
Sbjct: 61  VRNGAINGSKWHVFPIEKNLQEDLAKFLNQFYEDPNNIQPKELLIAEKIDKNLLNESL-- 118

Query: 321 KQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEI 360
                +     P++G K+K IE A+ NA  ++      + 
Sbjct: 119 -----RKACLFPQKGGKKKQIELAIENAKSAYIAYAKMKE 153


>gi|209527955|ref|ZP_03276440.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
 gi|209491614|gb|EDZ91984.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
          Length = 680

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G +   LL Q+F + + ++ +S   +  + GI  +IA  +Y  F    +
Sbjct: 528 VGEVNAELLAQNFPSCQSLAAASSAQIEGVYGIGAEIATSVYQWFQNPAN 577


>gi|189426316|ref|YP_001953493.1| DNA protecting protein DprA [Geobacter lovleyi SZ]
 gi|189422575|gb|ACD96973.1| DNA protecting protein DprA [Geobacter lovleyi SZ]
          Length = 364

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L  + GIGP+  R LL+ F T   +  ++P  LA++ G++ +IA  I
Sbjct: 8   ALRAVEGIGPVLFRRLLERFETPGHVFSAAPGALATVRGVTPQIAEAI 55


>gi|20088979|ref|NP_615054.1| hypothetical protein MA0080 [Methanosarcina acetivorans C2A]
 gi|19913829|gb|AAM03534.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 707

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKIYNHFH 608
           S L E+NGIG      L++ FG+    ++ I      +L+ + G+S   A  +   F 
Sbjct: 8   SGLQELNGIGERVACRLVEHFGSEEAALQAILEGDIASLSEVNGVSHTFALSLARDFR 65


>gi|298370450|ref|ZP_06981766.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281910|gb|EFI23399.1| holliday junction DNA helicase RuvA [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 193

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQRL--RDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +L  R++AH    FA        ++A +  L +++GIG      +L
Sbjct: 36  YRLPATGEAVQLYTQLVVREDAHLLFGFA-----TADERATFRQLVKVSGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  +   ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-SADELAQAVAEEDVKRLSSAPGIGKKTAER 123


>gi|237736936|ref|ZP_04567417.1| DNA repair protein radC [Fusobacterium mortiferum ATCC 9817]
 gi|229420798|gb|EEO35845.1| DNA repair protein radC [Fusobacterium mortiferum ATCC 9817]
          Length = 225

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + L++ FG +  +  +S + L S++GI +  A
Sbjct: 48  KELIEKFGNLDGVVMASIDELMSVKGIKQNSA 79


>gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
 gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
          Length = 935

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            I G+G      LL  F T++ +  ++   L 
Sbjct: 196 GIPGVGEKTAAKLLDRFDTIEGVI-ANVNELK 226


>gi|332654169|ref|ZP_08419913.1| helicase, RecD/TraA family [Ruminococcaceae bacterium D16]
 gi|332517255|gb|EGJ46860.1| helicase, RecD/TraA family [Ruminococcaceae bacterium D16]
          Length = 734

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           + G+G    RLL++ FG   + +I    P+ L  I GIS K A  I N F +
Sbjct: 95  VKGVGKATARLLVEEFGEEALNVIEE-EPDKLTRIRGISPKRARTISNAFRQ 145


>gi|239908279|ref|YP_002955020.1| helicase RecD/TraA family protein [Desulfovibrio magneticus RS-1]
 gi|239798145|dbj|BAH77134.1| helicase RecD/TraA family protein [Desulfovibrio magneticus RS-1]
          Length = 723

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598
           K   S L  I GIGP+  R +++ FG  T+ +I  +  + L  + GI  K
Sbjct: 85  KYLGSGL--IKGIGPVMARRIVKLFGEATLDVI-EADIQKLVEVPGIGSK 131


>gi|224476698|ref|YP_002634304.1| hypothetical protein Sca_1212 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421305|emb|CAL28119.1| hypothetical protein, similar to late competence operon protein
           ComEA [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 222

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A  S L  I G+GP + + +++     G+   I     E L  I+G   K   K+ ++ 
Sbjct: 167 AKESELTSITGLGPTKAKAIIEYRENKGSFNKI-----EQLKEIKGFGDKTYEKLKDYL 220


>gi|311069260|ref|YP_003974183.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942]
 gi|310869777|gb|ADP33252.1| Holliday junction DNA helicase RuvA [Bacillus atrophaeus 1942]
          Length = 201

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 532 RLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET--- 588
            +R++A  F++     R +KA ++ L  + GIGP     +L S G    +  +  +    
Sbjct: 49  HIREDA--FSLYGFSTREEKALFTKLLNVTGIGPKGALAILAS-GDPGAVIEAIEQEDEA 105

Query: 589 -LASIEGISKKIACKI 603
            L    G+ KK A +I
Sbjct: 106 FLVKFPGVGKKTARQI 121


>gi|293189679|ref|ZP_06608396.1| putative comEA protein [Actinomyces odontolyticus F0309]
 gi|292821417|gb|EFF80359.1| putative comEA protein [Actinomyces odontolyticus F0309]
          Length = 232

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 14/58 (24%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS------PETLASIEGISKKIACKI 603
           A  + L  + GIGP   + ++          R++       E L  + GI   +  KI
Sbjct: 177 ATEAELQTLPGIGPALAQRIISY--------RATHPRLSTVEELDDVPGIGPSLIEKI 226


>gi|226324463|ref|ZP_03799981.1| hypothetical protein COPCOM_02244 [Coprococcus comes ATCC 27758]
 gi|225206911|gb|EEG89265.1| hypothetical protein COPCOM_02244 [Coprococcus comes ATCC 27758]
          Length = 200

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L  ++GIG  R   ++      G  + I     E L  ++GI + I  KI  
Sbjct: 144 ATKAELLSLSGIGESRAEAIIAYRETNGGFRKI-----EDLKKVDGIKEGIFQKIRE 195


>gi|239623226|ref|ZP_04666257.1| helicase [Clostridiales bacterium 1_7_47_FAA]
 gi|239522192|gb|EEQ62058.1| helicase [Clostridiales bacterium 1_7_47FAA]
          Length = 785

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ F   T   +    PE L+ ++GIS+K+A  I
Sbjct: 90  IKGIGAALAARIVRHFKADTF-RVMEEEPERLSEVKGISEKMAMAI 134


>gi|71908755|ref|YP_286342.1| DNA repair protein RadC [Dechloromonas aromatica RCB]
 gi|123626759|sp|Q47BA9|Y3142_DECAR RecName: Full=UPF0758 protein Daro_3142
 gi|71848376|gb|AAZ47872.1| DNA replication and repair protein RadC [Dechloromonas aromatica
           RCB]
          Length = 226

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R LL  F G +  ++ +S E LAS+ GI    A ++   F
Sbjct: 48  RDLLHRFDGRLGTLAEASLEELASVSGIGMAKAAQLKASF 87


>gi|125975668|ref|YP_001039578.1| RecD/TraA family helicase [Clostridium thermocellum ATCC 27405]
 gi|125715893|gb|ABN54385.1| helicase, RecD/TraA family [Clostridium thermocellum ATCC 27405]
          Length = 710

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           K   S L  I GIGP+  + +++ F   T+++I    P+ L  + GI KK    I   + 
Sbjct: 80  KYLGSGL--IKGIGPVNAKRIVKVFKEDTIRVIEE-EPDRLIEVPGIGKKRVEMIKEAWQ 136

Query: 609 K 609
            
Sbjct: 137 N 137


>gi|325968460|ref|YP_004244652.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
           768-28]
 gi|323707663|gb|ADY01150.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
           768-28]
          Length = 349

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISR 583
           D + GIGP R   L+Q FG+++ + +
Sbjct: 245 DGVPGIGPQRALKLIQEFGSLEKLLQ 270


>gi|302391343|ref|YP_003827163.1| DNA replication and repair protein RadC [Acetohalobium arabaticum
           DSM 5501]
 gi|302203420|gb|ADL12098.1| DNA replication and repair protein RadC [Acetohalobium arabaticum
           DSM 5501]
          Length = 229

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            LL   G +K I   S E L  ++G+    A +I
Sbjct: 53  KLLTHTGGLKFIGDLSVEELQEVKGVGLAKAAQI 86


>gi|284928856|ref|YP_003421378.1| putative endonuclease [cyanobacterium UCYN-A]
 gi|284809315|gb|ADB95020.1| putative endonuclease [cyanobacterium UCYN-A]
          Length = 212

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 5  QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
           +PE  G+Y M   +G V Y+G + NL++ + SY  S+ H +        I+ I + +  
Sbjct: 23 HLPEKTGIYMMASSSGYVYYIGNSINLRQYLLSYNLSDLHKY-------DIHKIYYLLCN 75

Query: 65 -TEVE 68
           TE+E
Sbjct: 76 QTELE 80


>gi|254166886|ref|ZP_04873740.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
 gi|289596167|ref|YP_003482863.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
 gi|197624496|gb|EDY37057.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
 gi|289533954|gb|ADD08301.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
          Length = 339

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMI 581
           + I G+GP     L++ +G+++ I
Sbjct: 239 EGIKGVGPKTALKLIKKYGSLEKI 262


>gi|148654262|ref|YP_001274467.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148566372|gb|ABQ88517.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 580

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYN 605
            L  + G+GP     L +  G  ++  + R++ E  LA+++G   K+   I  
Sbjct: 96  ELLRVPGVGPRTAGRLYRELGITSLAELKRAAEEGRLATLKGFGAKMIEGILQ 148


>gi|42521112|ref|NP_967027.1| transcription elongation factor NusA [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410853|gb|AAS14961.1| N utilization substance protein A [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 520

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 7/54 (12%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L+EI G      +LL+   F +V+ IS +S + LASIEG ++ IA +++N  +K
Sbjct: 387 LEEIMG------QLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANK 434


>gi|37521330|ref|NP_924707.1| hypothetical protein gll1761 [Gloeobacter violaceus PCC 7421]
 gi|35212327|dbj|BAC89702.1| gll1761 [Gloeobacter violaceus PCC 7421]
          Length = 360

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
            G+GPL  R L + FG+++    ++    +++EG
Sbjct: 15  PGVGPLTIRRLREHFGSLQAAWEAAETEFSAVEG 48


>gi|58696914|ref|ZP_00372417.1| N utilization substance protein A [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698399|ref|ZP_00373311.1| N utilization substance protein A, putative [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225631019|ref|YP_002727810.1| transcription elongation factor NusA [Wolbachia sp. wRi]
 gi|13569584|gb|AAK31158.1|AF348330_4 N utilization substance protein A [Wolbachia sp. wRi]
 gi|58535081|gb|EAL59168.1| N utilization substance protein A, putative [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|58536861|gb|EAL60065.1| N utilization substance protein A [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225593000|gb|ACN96019.1| transcription elongation factor NusA [Wolbachia sp. wRi]
          Length = 520

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 7/54 (12%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L+EI G      +LL+   F +V+ IS +S + LASIEG ++ IA +++N  +K
Sbjct: 387 LEEIMG------QLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANK 434


>gi|300936623|ref|ZP_07151527.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|300458204|gb|EFK21697.1| conserved hypothetical protein [Escherichia coli MS 21-1]
          Length = 646

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK        ++      E      RD     +  L+D A           R++     
Sbjct: 471 IAKRMMLEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 510

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 566

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 567 ASCERRFVFRPNEAVTP 583


>gi|291297691|ref|YP_003508969.1| hypothetical protein Snas_0156 [Stackebrandtia nassauensis DSM
           44728]
 gi|290566911|gb|ADD39876.1| protein of unknown function DUF147 [Stackebrandtia nassauensis DSM
           44728]
          Length = 394

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 4/34 (11%), Positives = 16/34 (47%)

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            F +++ +  ++ + L +++G+    A  +    
Sbjct: 348 HFASLQRLLGATVDDLQAVDGVGAARARSVREGL 381


>gi|196034552|ref|ZP_03101961.1| DNA repair protein RadC [Bacillus cereus W]
 gi|228929500|ref|ZP_04092520.1| DNA repair protein radC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|195993094|gb|EDX57053.1| DNA repair protein RadC [Bacillus cereus W]
 gi|228830180|gb|EEM75797.1| DNA repair protein radC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 225

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87


>gi|163798140|ref|ZP_02192076.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
 gi|159176583|gb|EDP61161.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
          Length = 727

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           I GIGP+  R ++++FG  V  I  + P+ L  + GI K  A +I
Sbjct: 88  IRGIGPVYARKMVKAFGEKVFDIIEAEPDRLREVTGIGKVRAKRI 132


>gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017]
 gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017]
          Length = 957

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IG      LL  +GT+  I  +S + + 
Sbjct: 196 DNIPGVKGIGDKTAVKLLTEYGTLDNIY-ASVDQIK 230


>gi|229158072|ref|ZP_04286142.1| DNA repair protein radC [Bacillus cereus ATCC 4342]
 gi|228625391|gb|EEK82148.1| DNA repair protein radC [Bacillus cereus ATCC 4342]
          Length = 181

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGIAKATQLIAAF 87


>gi|281419971|ref|ZP_06250970.1| helicase, RecD/TraA family [Prevotella copri DSM 18205]
 gi|281406098|gb|EFB36778.1| helicase, RecD/TraA family [Prevotella copri DSM 18205]
          Length = 747

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           K   S L  + GIGP    L+++ FG  T+++I     E L  + GI KK   KI +
Sbjct: 83  KYLGSGL--VKGIGPKYAHLIVERFGTDTIEVIED-DIERLYEVAGIGKKRVEKIRD 136


>gi|254168936|ref|ZP_04875776.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
 gi|197622200|gb|EDY34775.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
          Length = 339

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMI 581
           + I G+GP     L++ +G+++ I
Sbjct: 239 EGIKGVGPKTALKLIKKYGSLEKI 262


>gi|256003597|ref|ZP_05428586.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 2360]
 gi|281416676|ref|ZP_06247696.1| helicase, RecD/TraA family [Clostridium thermocellum JW20]
 gi|255992388|gb|EEU02481.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 2360]
 gi|281408078|gb|EFB38336.1| helicase, RecD/TraA family [Clostridium thermocellum JW20]
          Length = 713

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           K   S L  I GIGP+  + +++ F   T+++I    P+ L  + GI KK    I   + 
Sbjct: 83  KYLGSGL--IKGIGPVNAKRIVKVFKEDTIRVIEE-EPDRLIEVPGIGKKRVEMIKEAWQ 139

Query: 609 K 609
            
Sbjct: 140 N 140


>gi|190149554|ref|YP_001968079.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249558|ref|ZP_07335765.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251815|ref|ZP_07533717.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307262875|ref|ZP_07544499.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|229470525|sp|B3H0C5|RUVA_ACTP7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189914685|gb|ACE60937.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651632|gb|EFL81781.1| holliday junction ATP-dependent DNA helicase RuvA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860722|gb|EFM92733.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306871780|gb|EFN03500.1| Holliday junction DNA helicase motor protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 201

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET 588
           +R++AH    FA     +++ +  +  L + NG+GP     +L +  +V   + +   E 
Sbjct: 53  VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVSQFANAVEHEE 106

Query: 589 LAS---IEGISKKIACKIYNHFH 608
           LA    I GI +K A ++     
Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129


>gi|308063716|gb|ADO05603.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Sat464]
          Length = 183

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L +ING+G      +L       F ++        + L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123


>gi|307244055|ref|ZP_07526174.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
 gi|306492579|gb|EFM64613.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
          Length = 702

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    +LL  + G++  I  +S E L  IE   + ++  +   FH++ +
Sbjct: 539 VGVKGAKLLADACGSMDKIMAASEEDLIQIEEFGQIMSDSVVKFFHEDKN 588


>gi|293398290|ref|ZP_06642482.1| DNA transport competence protein [Neisseria gonorrhoeae F62]
 gi|291611296|gb|EFF40379.1| DNA transport competence protein [Neisseria gonorrhoeae F62]
          Length = 141

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 72  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLIKVKGIGPAVLAKLKD 119



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 64  NINAASQQELEALPGIGPAKAKAIAEY 90


>gi|260888483|ref|ZP_05899746.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185]
 gi|330838208|ref|YP_004412788.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185]
 gi|260861680|gb|EEX76180.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185]
 gi|329745972|gb|AEB99328.1| helicase, RecD/TraA family [Selenomonas sputigena ATCC 35185]
          Length = 727

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I G+G      L+Q FG  T+++I +  P  L  + G+ KK A KI+  +
Sbjct: 90  IAGVGEAMAHRLVQKFGKETLEIIEK-KPSRLTEVAGVGKKTAAKIHASY 138


>gi|260439692|ref|ZP_05793508.1| ComEA-related protein [Neisseria gonorrhoeae DGI2]
 gi|291042936|ref|ZP_06568675.1| DNA transport competence protein [Neisseria gonorrhoeae DGI2]
 gi|291013143|gb|EFE05111.1| DNA transport competence protein [Neisseria gonorrhoeae DGI2]
 gi|317164625|gb|ADV08166.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317164978|gb|ADV08519.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317165078|gb|ADV08619.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317165312|gb|ADV08853.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 131

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 62  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLIKVKGIGPAVLAKLKD 109



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 54  NINAASQQELEALPGIGPAKAKAIAEY 80


>gi|188527709|ref|YP_001910396.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Shi470]
 gi|229560035|sp|B2UU34|RUVA_HELPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|188143949|gb|ACD48366.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           Shi470]
 gi|308062206|gb|ADO04094.1| Holliday junction DNA helicase RuvA [Helicobacter pylori Cuz20]
          Length = 183

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L +ING+G      +L       F ++        + L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFESIIATKE--VKRLQQVPGIGKKLADKI 123


>gi|91201867|emb|CAJ74927.1| similar to DNA repair protein RadC [Candidatus Kuenenia
           stuttgartiensis]
          Length = 232

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL  +G  + +S  S   L  ++GI    A +I    
Sbjct: 55  KKLLSDYGDFRALSAISIGELCKVKGIGPARAAQIKASL 93


>gi|59801540|ref|YP_208252.1| ComE1 [Neisseria gonorrhoeae FA 1090]
 gi|240122228|ref|ZP_04735190.1| ComE1 [Neisseria gonorrhoeae PID24-1]
 gi|10505052|gb|AAG18334.1|AF268314_1 ComE [Neisseria gonorrhoeae]
 gi|10505056|gb|AAG18336.1|AF268315_1 ComE [Neisseria gonorrhoeae]
 gi|10505059|gb|AAG18337.1|AF268316_1 ComE [Neisseria gonorrhoeae]
 gi|10505061|gb|AAG18338.1|AF268317_1 ComE [Neisseria gonorrhoeae]
 gi|59718435|gb|AAW89840.1| DNA-binding competence protein 1 [Neisseria gonorrhoeae FA 1090]
          Length = 99

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLIKVKGIGPAVLAKLKD 77



 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L ++ GI    A  I  +
Sbjct: 22  NINAASQQELEALPGIGPAKAKAIAEY 48


>gi|323486257|ref|ZP_08091585.1| hypothetical protein HMPREF9474_03336 [Clostridium symbiosum
           WAL-14163]
 gi|323693951|ref|ZP_08108137.1| helicase [Clostridium symbiosum WAL-14673]
 gi|323400475|gb|EGA92845.1| hypothetical protein HMPREF9474_03336 [Clostridium symbiosum
           WAL-14163]
 gi|323501997|gb|EGB17873.1| helicase [Clostridium symbiosum WAL-14673]
          Length = 767

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ F T    I    PE LA I+GIS+K+A  I
Sbjct: 90  IKGIGAALATRIVKKFKTDTFRIMEEEPERLAEIKGISEKMAMAI 134


>gi|186682634|ref|YP_001865830.1| DNA protecting protein DprA [Nostoc punctiforme PCC 73102]
 gi|186465086|gb|ACC80887.1| DNA protecting protein DprA [Nostoc punctiforme PCC 73102]
          Length = 371

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH---FHKNT 611
           +I+GIGP+  R L Q FGT+     ++   L  +EG   +   K+       H   
Sbjct: 13  QISGIGPVLLRRLQQHFGTLATAWNATKVQLGEVEGFGFQTLEKVVQQRSRLHPEQ 68


>gi|291440662|ref|ZP_06580052.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672]
 gi|291343557|gb|EFE70513.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672]
          Length = 301

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  FG +  I  +
Sbjct: 197 LPGVPGIGEKTAAKLLAEFGDLAGILAA 224


>gi|261400911|ref|ZP_05987036.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269209280|gb|EEZ75735.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
          Length = 80

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 11  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLRD 58


>gi|261400011|ref|ZP_05986136.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269215027|ref|ZP_05987596.2| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269215280|ref|ZP_05988050.2| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269207910|gb|EEZ74365.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269208438|gb|EEZ74893.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269210227|gb|EEZ76682.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
          Length = 99

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEALPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLRD 77


>gi|302561571|ref|ZP_07313913.1| 5'-3' exonuclease [Streptomyces griseoflavus Tu4000]
 gi|302479189|gb|EFL42282.1| 5'-3' exonuclease [Streptomyces griseoflavus Tu4000]
          Length = 306

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  FG +  I  +
Sbjct: 202 LPGVPGIGEKTAAKLLAEFGDLAGILAA 229


>gi|326204632|ref|ZP_08194488.1| DNA protecting protein DprA [Clostridium papyrosolvens DSM 2782]
 gi|325985199|gb|EGD46039.1| DNA protecting protein DprA [Clostridium papyrosolvens DSM 2782]
          Length = 374

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           L  + G+ P +   LL  F +  +I   S   L + +G+++K    I    + +
Sbjct: 10  LSSLEGLSPKKAFDLLDKFKSPDVIYGLSKNELKNTKGLTEK---NIKELLNSD 60


>gi|239932297|ref|ZP_04689250.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672]
          Length = 314

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  FG +  I  +
Sbjct: 210 LPGVPGIGEKTAAKLLAEFGDLAGILAA 237


>gi|229032108|ref|ZP_04188086.1| DNA repair protein radC [Bacillus cereus AH1271]
 gi|228729198|gb|EEL80196.1| DNA repair protein radC [Bacillus cereus AH1271]
          Length = 240

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 65  KILHHFDGLRMLKDATLEELVSIHGVGIAKAAQLIAAF 102


>gi|225677161|ref|ZP_03788159.1| transcription elongation factor NusA [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590785|gb|EEH12014.1| transcription elongation factor NusA [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 523

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 7/54 (12%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L+EI G      +LL+   F +V+ IS +S + LASIEG ++ IA +++N  +K
Sbjct: 387 LEEIMG------QLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANK 434


>gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381]
 gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            I GIG    + LL++FG+++ I  
Sbjct: 186 GIKGIGEKGAKKLLENFGSLEKIYE 210


>gi|76787965|ref|YP_329528.1| ComE operon protein 1 [Streptococcus agalactiae A909]
 gi|76563022|gb|ABA45606.1| ComE operon protein 1, putative [Streptococcus agalactiae A909]
          Length = 217

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           KA  S L  I+G+   R + +L    +       + + L ++ GI +K   K+  
Sbjct: 160 KADLSSLQTISGVWAKRAQDILDYRDSQGGFK--TIDDLKNVSGIGEKTLEKLRQ 212


>gi|42783591|ref|NP_980838.1| DNA repair protein RadC [Bacillus cereus ATCC 10987]
 gi|54036227|sp|Q72ZX2|Y4545_BACC1 RecName: Full=UPF0758 protein BCE_4545
 gi|42739520|gb|AAS43446.1| DNA repair protein RadC [Bacillus cereus ATCC 10987]
          Length = 225

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGVAKATQLIAAF 87


>gi|325570546|ref|ZP_08146272.1| putative competence protein ComEA [Enterococcus casseliflavus ATCC
           12755]
 gi|325156392|gb|EGC68572.1| putative competence protein ComEA [Enterococcus casseliflavus ATCC
           12755]
          Length = 213

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L E+ G+G  +   ++     +G  K I     + L  I GI +K    +  
Sbjct: 160 QLQELPGVGAKKAEAIIAYREEYGFFKQI-----DDLKKITGIGEKTFESLKE 207


>gi|323701838|ref|ZP_08113508.1| DNA protecting protein DprA [Desulfotomaculum nigrificans DSM 574]
 gi|323533142|gb|EGB23011.1| DNA protecting protein DprA [Desulfotomaculum nigrificans DSM 574]
          Length = 363

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            G GP R   L++ FG+V+   ++    L +I  +  K A K+
Sbjct: 15  PGAGP-RIWQLIKYFGSVEQAWQAGESDLGAIPWLGPKGAQKL 56


>gi|319651725|ref|ZP_08005851.1| DNA repair protein RadC [Bacillus sp. 2_A_57_CT2]
 gi|317396544|gb|EFV77256.1| DNA repair protein RadC [Bacillus sp. 2_A_57_CT2]
          Length = 229

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 19/37 (51%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L+  F  ++++  +S + + +I+GI    A ++   
Sbjct: 54  RLITHFEGLRLLKDASLDEITAIKGIGSAKAIQLLAA 90


>gi|304415222|ref|ZP_07395930.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
           LSR1]
 gi|304282928|gb|EFL91383.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
           LSR1]
          Length = 674

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 18/48 (37%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L   F T+  +  +  ETL  +  +   +A  + N   + 
Sbjct: 522 VGETTAANLAAHFRTLSHLRSADVETLQQVADVGVVVATHVINFLAQE 569


>gi|298246013|ref|ZP_06969819.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297553494|gb|EFH87359.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 589

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 560 INGIGPLRKRLLLQ--SFGTVKMISRSSPET-LASIEGISKKIACKIYN---HFHKNTS 612
           I G+GP +   +       T+  + ++  +  +A I G  KK   KI        ++  
Sbjct: 97  IPGVGPKKINAIYDQLHVTTLAELEQACKDDKVAKIPGFGKKTQEKILQGLAFLKQHAD 155


>gi|284048802|ref|YP_003399141.1| helicase, RecD/TraA family [Acidaminococcus fermentans DSM 20731]
 gi|283953023|gb|ADB47826.1| helicase, RecD/TraA family [Acidaminococcus fermentans DSM 20731]
          Length = 721

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 561 NGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI---YNHFHKN 610
            G+GP   + ++  FG  T++++ +  PE L  + GI KK A  I   Y    +N
Sbjct: 93  KGVGPAMAQRIVDQFGEDTLEVLEK-FPERLREVSGIGKKKAEAIITSYGELREN 146


>gi|262276542|ref|ZP_06054351.1| exonuclease IX [Grimontia hollisae CIP 101886]
 gi|262220350|gb|EEY71666.1| exonuclease IX [Grimontia hollisae CIP 101886]
          Length = 258

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            + GIGP     LLQ +GT++ +  +  E + 
Sbjct: 186 GVPGIGPKTASTLLQRYGTLEQLYAA--EDIE 215


>gi|261749390|ref|YP_003257075.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497482|gb|ACX83932.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 678

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    + L + F  +  + ++    L SI GI KKI+  I  +F
Sbjct: 516 GIPHVGEYISKKLTEKFLNINSLIQADEAQLTSISGIGKKISESIKTYF 564


>gi|257876954|ref|ZP_05656607.1| DNA-binding protein [Enterococcus casseliflavus EC20]
 gi|257811120|gb|EEV39940.1| DNA-binding protein [Enterococcus casseliflavus EC20]
          Length = 208

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L E+ G+G  +   ++     +G  K I     + L  I GI +K    +  
Sbjct: 155 QLQELPGVGAKKAEAIIAYREEYGFFKQI-----DDLKKITGIGEKTFESLKE 202


>gi|257874395|ref|ZP_05654048.1| DNA-binding protein [Enterococcus casseliflavus EC10]
 gi|257808559|gb|EEV37381.1| DNA-binding protein [Enterococcus casseliflavus EC10]
          Length = 213

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L E+ G+G  +   ++     +G  K I     + L  I GI +K    +  
Sbjct: 160 QLQELPGVGAKKAEAIIAYREEYGFFKQI-----DDLKKITGIGEKTFESLKE 207


>gi|257868065|ref|ZP_05647718.1| late competence protein ComEA [Enterococcus casseliflavus EC30]
 gi|257802148|gb|EEV31051.1| late competence protein ComEA [Enterococcus casseliflavus EC30]
          Length = 208

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L E+ G+G  +   ++     +G  K I     + L  I GI +K    +  
Sbjct: 155 QLQELPGVGAKKAEAIIAYREEYGFFKQI-----DDLKKITGIGEKTFESLKE 202


>gi|227497092|ref|ZP_03927340.1| DNA integrity scanning protein [Actinomyces urogenitalis DSM 15434]
 gi|226833349|gb|EEH65732.1| DNA integrity scanning protein [Actinomyces urogenitalis DSM 15434]
          Length = 356

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 27/52 (51%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +I  +  +  R +++ +G+++ +   S E L +++G+  + A  + +  
Sbjct: 292 ILSKIPRLPLVTARAVVEHWGSLQAVLGVSLEELEALDGVGPRRARTLRDGL 343


>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
 gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
          Length = 925

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + LL  FG+++ +  ++ + L 
Sbjct: 192 DNIPGCPGVGEKTAQKLLTEFGSIENLL-ANTDKLK 226


>gi|218133029|ref|ZP_03461833.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991902|gb|EEC57906.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC
           43243]
          Length = 656

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 541 AITTHRKRRK---KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           AI   R R     K  YS    I  +G    ++++++ GT+  I  ++ E L +I+G+ +
Sbjct: 484 AID--RSRHTTLPKLIYS--LGIANVGLSNAKMIVKNTGTLDRILSATREELCAIDGVGE 539

Query: 598 KIACKIYNHF 607
            IA    ++F
Sbjct: 540 VIADSFVSYF 549


>gi|110667807|ref|YP_657618.1| DNA repair and recombination protein radA [Haloquadratum walsbyi
           DSM 16790]
 gi|109625554|emb|CAJ51980.1| probable DNA repair and recombination protein radA [Haloquadratum
           walsbyi DSM 16790]
          Length = 520

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L  I G+   R   L  + F T   ++ +SP  L ++  I    A +I+ 
Sbjct: 232 LRGITGVSETRANHLRTAGFETRSAVATASPHELTAVPSIGTNTAQQIHA 281


>gi|224541319|ref|ZP_03681858.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525756|gb|EEF94861.1| hypothetical protein CATMIT_00479 [Catenibacterium mitsuokai DSM
           15897]
          Length = 204

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKI 599
             +K+ +K  +  L  + GIG      +L + G +  I  +    +   L  I GI  K 
Sbjct: 77  GFKKKEEKELFQKLILVKGIGCKTAIGILAT-GEIDAIIDAIEGKNIAYLKKIPGIGPKA 135

Query: 600 ACKIYNHFH 608
           A +I    H
Sbjct: 136 AQQIILDLH 144


>gi|194333788|ref|YP_002015648.1| PHP domain-containing protein [Prosthecochloris aestuarii DSM 271]
 gi|194311606|gb|ACF46001.1| PHP domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 574

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE-TLASIEGISKKIACKIY 604
           +   A++S L EI G+GP + + L  +     ++ +  ++ +  +A + G  KK    I 
Sbjct: 87  KNAHASFSELMEIPGLGPRKVKALYDALDIRNIEELEEAAEQGRIALVAGFGKKSQQNIL 146

Query: 605 N 605
            
Sbjct: 147 K 147



 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 557 LDEINGIG-PLRKRLL-------LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  + GIG  L K++L       L+   T++  + +S   L  I G+  +    +Y+  
Sbjct: 56  LTRLPGIGRDLSKKILEIVETGHLRFLDTLEKNAHASFSELMEIPGLGPRKVKALYDAL 114


>gi|30264522|ref|NP_846899.1| DNA repair protein RadC [Bacillus anthracis str. Ames]
 gi|47529985|ref|YP_021333.1| DNA repair protein RadC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187346|ref|YP_030598.1| DNA repair protein RadC [Bacillus anthracis str. Sterne]
 gi|49478639|ref|YP_038504.1| DNA repair protein RadC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65321823|ref|ZP_00394782.1| COG2003: DNA repair proteins [Bacillus anthracis str. A2012]
 gi|165872011|ref|ZP_02216652.1| DNA repair protein RadC [Bacillus anthracis str. A0488]
 gi|167636192|ref|ZP_02394496.1| DNA repair protein RadC [Bacillus anthracis str. A0442]
 gi|167640700|ref|ZP_02398960.1| DNA repair protein RadC [Bacillus anthracis str. A0193]
 gi|170688713|ref|ZP_02879918.1| DNA repair protein RadC [Bacillus anthracis str. A0465]
 gi|170708383|ref|ZP_02898827.1| DNA repair protein RadC [Bacillus anthracis str. A0389]
 gi|177653967|ref|ZP_02936008.1| DNA repair protein RadC [Bacillus anthracis str. A0174]
 gi|190566980|ref|ZP_03019896.1| DNA repair protein RadC [Bacillus anthracis Tsiankovskii-I]
 gi|225866435|ref|YP_002751813.1| DNA repair protein RadC [Bacillus cereus 03BB102]
 gi|227817234|ref|YP_002817243.1| DNA repair protein RadC [Bacillus anthracis str. CDC 684]
 gi|228917092|ref|ZP_04080650.1| DNA repair protein radC [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228948168|ref|ZP_04110452.1| DNA repair protein radC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123994|ref|ZP_04253186.1| DNA repair protein radC [Bacillus cereus 95/8201]
 gi|229601494|ref|YP_002868738.1| DNA repair protein RadC [Bacillus anthracis str. A0248]
 gi|254687056|ref|ZP_05150914.1| DNA repair protein RadC [Bacillus anthracis str. CNEVA-9066]
 gi|254724618|ref|ZP_05186401.1| DNA repair protein RadC [Bacillus anthracis str. A1055]
 gi|254736558|ref|ZP_05194264.1| DNA repair protein RadC [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741596|ref|ZP_05199283.1| DNA repair protein RadC [Bacillus anthracis str. Kruger B]
 gi|254754806|ref|ZP_05206841.1| DNA repair protein RadC [Bacillus anthracis str. Vollum]
 gi|254757638|ref|ZP_05209665.1| DNA repair protein RadC [Bacillus anthracis str. Australia 94]
 gi|301055961|ref|YP_003794172.1| DNA repair protein [Bacillus anthracis CI]
 gi|33301484|sp|Q81LD7|Y4685_BACAN RecName: Full=UPF0758 protein BA_4685/GBAA_4685/BAS4351
 gi|54036223|sp|Q6HD72|Y4187_BACHK RecName: Full=UPF0758 protein BT9727_4187
 gi|254764425|sp|C3P9D9|Y4704_BACAA RecName: Full=UPF0758 protein BAA_4704
 gi|254764426|sp|C3L6Y5|Y4721_BACAC RecName: Full=UPF0758 protein BAMEG_4721
 gi|254764427|sp|C1ETQ0|Y4566_BACC3 RecName: Full=UPF0758 protein BCA_4566
 gi|30259180|gb|AAP28385.1| DNA repair protein RadC [Bacillus anthracis str. Ames]
 gi|47505133|gb|AAT33809.1| DNA repair protein RadC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181273|gb|AAT56649.1| DNA repair protein RadC [Bacillus anthracis str. Sterne]
 gi|49330195|gb|AAT60841.1| DNA repair protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|164712301|gb|EDR17837.1| DNA repair protein RadC [Bacillus anthracis str. A0488]
 gi|167511272|gb|EDR86658.1| DNA repair protein RadC [Bacillus anthracis str. A0193]
 gi|167528413|gb|EDR91181.1| DNA repair protein RadC [Bacillus anthracis str. A0442]
 gi|170126758|gb|EDS95641.1| DNA repair protein RadC [Bacillus anthracis str. A0389]
 gi|170667399|gb|EDT18157.1| DNA repair protein RadC [Bacillus anthracis str. A0465]
 gi|172081022|gb|EDT66100.1| DNA repair protein RadC [Bacillus anthracis str. A0174]
 gi|190561971|gb|EDV15940.1| DNA repair protein RadC [Bacillus anthracis Tsiankovskii-I]
 gi|225786937|gb|ACO27154.1| DNA repair protein RadC [Bacillus cereus 03BB102]
 gi|227003430|gb|ACP13173.1| DNA repair protein RadC [Bacillus anthracis str. CDC 684]
 gi|228659296|gb|EEL14944.1| DNA repair protein radC [Bacillus cereus 95/8201]
 gi|228811526|gb|EEM57863.1| DNA repair protein radC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228842510|gb|EEM87600.1| DNA repair protein radC [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229265902|gb|ACQ47539.1| DNA repair protein RadC [Bacillus anthracis str. A0248]
 gi|300378130|gb|ADK07034.1| DNA repair protein [Bacillus cereus biovar anthracis str. CI]
          Length = 225

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGVAKATQLIAAF 87


>gi|325677919|ref|ZP_08157561.1| DNA repair protein RadC [Ruminococcus albus 8]
 gi|324110473|gb|EGC04647.1| DNA repair protein RadC [Ruminococcus albus 8]
          Length = 229

 Score = 40.5 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LL+ FG ++ +  +    L  ++G+  K A ++ N  
Sbjct: 52  RLLKKFGNIRTVLTAPVTDLCQVQGVGVKCAEQL-NFL 88


>gi|240145514|ref|ZP_04744115.1| DNA processing protein DprA [Roseburia intestinalis L1-82]
 gi|257202330|gb|EEV00615.1| DNA processing protein DprA [Roseburia intestinalis L1-82]
          Length = 361

 Score = 40.5 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           L  I GIG   +  L+ + G+ + +   + + L  I G+ +K A  I
Sbjct: 8   LSNIPGIGIRTRNRLIGAAGSAREVYGLTEKQLLLIPGVEEKHAAGI 54


>gi|16077156|ref|NP_387969.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221307899|ref|ZP_03589746.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312220|ref|ZP_03594025.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317154|ref|ZP_03598448.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321417|ref|ZP_03602711.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296333085|ref|ZP_06875539.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672787|ref|YP_003864458.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321313758|ref|YP_004206045.1| DNA integrity scanning protein DisA [Bacillus subtilis BSn5]
 gi|586902|sp|P37573|DISA_BACSU RecName: Full=DNA integrity scanning protein disA
 gi|467476|dbj|BAA05322.1| unknown [Bacillus subtilis]
 gi|2632355|emb|CAB11864.1| DNA integrity scanning protein; cell cycle checkpoint DNA scanning
           protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482460|dbj|BAI83535.1| DNA integrity scanning protein [Bacillus subtilis subsp. natto
           BEST195]
 gi|296149701|gb|EFG90596.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411030|gb|ADM36148.1| DNA integrity scanning protein DisA [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|320020032|gb|ADV95018.1| DNA integrity scanning protein DisA [Bacillus subtilis BSn5]
          Length = 360

 Score = 40.5 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG +  I  +S E L  +EGI +  A KI     +
Sbjct: 315 FGVLPRIIEASAEELDEVEGIGEVRAQKIKKGLKR 349


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
          Length = 968

 Score = 40.5 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVK 579
            I GIGP     LL  FG++ 
Sbjct: 198 GIPGIGPKTAAQLLNQFGSLD 218


>gi|315649732|ref|ZP_07902816.1| DNA integrity scanning protein DisA [Paenibacillus vortex V453]
 gi|315274920|gb|EFU38296.1| DNA integrity scanning protein DisA [Paenibacillus vortex V453]
          Length = 358

 Score = 40.5 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L++I  +  +  R L+  F  +  I  +S   L  ++GI +  A  I     +
Sbjct: 294 ILNKIPRLPNVIIRNLVDQFHDLSSIMSASIHELDEVDGIGEVRARTIKEGLKR 347


>gi|260881563|ref|ZP_05404712.2| competence protein [Mitsuokella multacida DSM 20544]
 gi|260848766|gb|EEX68773.1| competence protein [Mitsuokella multacida DSM 20544]
          Length = 224

 Score = 40.5 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LD + GIGP   + +++ F   +    +  E +  ++GI +    K+ +
Sbjct: 173 ELDTLPGIGPAMAQRIIE-FRETEGAFTA-IEDIKKVKGIGEAKFEKMKD 220



 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S E L ++ GI   +A +I   
Sbjct: 165 NINTASAEELDTLPGIGPAMAQRIIEF 191


>gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136]
          Length = 971

 Score = 40.5 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 15/57 (26%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLA-----SIEG------ISKKIA 600
           D I GI   G      L+Q FG+V+ +     + +       ++       ISK++A
Sbjct: 196 DNIPGIAGVGEKTAAKLIQQFGSVEAMLD-RVDEIEGKLKDKVKAGAEMARISKQLA 251


>gi|39995494|ref|NP_951445.1| DNA repair protein RadC [Geobacter sulfurreducens PCA]
 gi|54036228|sp|Q74G62|Y386_GEOSL RecName: Full=UPF0758 protein GSU0386
 gi|39982257|gb|AAR33718.1| DNA repair protein RadC [Geobacter sulfurreducens PCA]
 gi|298504494|gb|ADI83217.1| protein of unknown function DUF2466 [Geobacter sulfurreducens
           KN400]
          Length = 229

 Score = 40.5 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R LLQ  G ++ ++ ++   L +++G+    A  I    
Sbjct: 52  RALLQECGDLRTLAGATVSELCAVKGMGTAKATSIKAAL 90


>gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
 gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
          Length = 907

 Score = 40.5 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           D I G   IGP +   +L+ +G ++ +   + + L  I GI K +
Sbjct: 190 DGIPGVRKIGPKKAVPMLEKYGNLEGVYE-NIDKLTEIPGIGKSL 233


>gi|237785928|ref|YP_002906633.1| hypothetical protein ckrop_1348 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758840|gb|ACR18090.1| hypothetical protein ckrop_1348 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 131

 Score = 40.5 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 15/52 (28%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISK-KIA 600
            L  I G+GP     ++        F ++        + LA ++GI   K+A
Sbjct: 80  ELTAIPGVGPKTASAIIAYREQNGPFRSI--------DQLAEVKGIGPAKLA 123


>gi|291542878|emb|CBL15988.1| DNA ligase, NAD-dependent [Ruminococcus bromii L2-63]
          Length = 661

 Score = 40.5 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           K+  + L        I  IG    +++ ++F T+  I  +  E    I+G    +A  + 
Sbjct: 494 KSKENELFRLVFALGIRNIGLKAAKIICENFATIDDIMSAKAEDFEKIDGFGAVMAESLE 553

Query: 605 NHF 607
           N+F
Sbjct: 554 NYF 556


>gi|291390625|ref|XP_002711804.1| PREDICTED: excision repair cross-complementing rodent repair
           deficiency, complementation group 4 [Oryctolagus
           cuniculus]
          Length = 909

 Score = 40.5 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L ++ G+     R ++     +  ++  S + LA I G +   A ++++  H
Sbjct: 845 LLKMPGVNAKNCRSVMNHVKNIAELATLSQDELARILG-NAVNAKQLHDFLH 895


>gi|259501108|ref|ZP_05744010.1| DNA ligase [Lactobacillus iners DSM 13335]
 gi|302190444|ref|ZP_07266698.1| DNA ligase [Lactobacillus iners AB-1]
 gi|259167802|gb|EEW52297.1| DNA ligase [Lactobacillus iners DSM 13335]
          Length = 672

 Score = 40.5 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I+ +G    RL+ Q F  +  I + S   L  I+ I + IA  +  +F + +
Sbjct: 513 GIDHVGAKAARLIAQKFHDLNTIRKCSIADLMQIDTIGQTIAESMVKYFEQQS 565


>gi|217076565|ref|YP_002334281.1| DNA repair protein [Thermosipho africanus TCF52B]
 gi|217036418|gb|ACJ74940.1| DNA repair protein [Thermosipho africanus TCF52B]
          Length = 213

 Score = 40.5 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           + L ++F  ++K IS +S + L  ++G+    A  I   
Sbjct: 39  KNLFETFDKSLKKISTASIDELCKVKGLGTVKAVTILAA 77


>gi|222056019|ref|YP_002538381.1| Helix-hairpin-helix DNA-binding class 1 [Geobacter sp. FRC-32]
 gi|221565308|gb|ACM21280.1| Helix-hairpin-helix DNA-binding class 1 [Geobacter sp. FRC-32]
          Length = 189

 Score = 40.5 bits (93), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 14/56 (25%)

Query: 558 DEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + + GIGP   + ++        F         S E L S++GIS+    KI   F
Sbjct: 139 EALPGIGPTTAKDIVNYRQDNGGF--------CSIEELKSVKGISEGKVEKIRGFF 186


>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
 gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
          Length = 921

 Score = 40.5 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + LL  FG+++ +  ++ + L 
Sbjct: 188 DNIPGCPGVGEKTAQKLLTEFGSIENLL-ANTDKLK 222


>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
          Length = 921

 Score = 40.5 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + LL  FG+++ +  ++ + L 
Sbjct: 188 DNIPGCPGVGEKTAQKLLTEFGSIENLL-ANTDKLK 222


>gi|308233598|ref|ZP_07664335.1| DNA ligase, NAD-dependent [Atopobium vaginae DSM 15829]
 gi|328944216|ref|ZP_08241680.1| DNA ligase [Atopobium vaginae DSM 15829]
 gi|327491135|gb|EGF22910.1| DNA ligase [Atopobium vaginae DSM 15829]
          Length = 792

 Score = 40.5 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 27/50 (54%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G     L++ ++  ++ + R+  + +A+I+G+  KIA  + +  H
Sbjct: 626 GIRHVGASVAELIVATYPDLESLLRADKDEIAAIDGVGPKIAASLVDFLH 675


>gi|225019213|ref|ZP_03708405.1| hypothetical protein CLOSTMETH_03166 [Clostridium methylpentosum
           DSM 5476]
 gi|224948017|gb|EEG29226.1| hypothetical protein CLOSTMETH_03166 [Clostridium methylpentosum
           DSM 5476]
          Length = 737

 Score = 40.5 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIGP     ++  FG  T++ I +  PE L  ++GIS+K+A  +
Sbjct: 94  IKGIGPALAERIVSMFGEQTLERIQQ-DPECLTQVKGISQKMAENL 138


>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
 gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
          Length = 921

 Score = 40.5 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + LL  FG+++ +  ++ + L 
Sbjct: 188 DNIPGCPGVGEKTAQKLLTEFGSIENLL-ANTDKLK 222


>gi|297517186|ref|ZP_06935572.1| nucleotide excision repair endonuclease [Escherichia coli OP50]
          Length = 193

 Score = 40.5 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 14/177 (7%)

Query: 81  KPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINS 137
           +P FN  LR ++    + + +K     +                FG FA+  A  + + +
Sbjct: 1   QPLFNKRLRRNRQLCALQLNEK----RVDVVYAKEVDFSRAPNLFGLFANRRAALQALQT 56

Query: 138 LQRTFFLRSCADS-VFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNH 196
           +     L           R R C    +KRC+G C G+ S E++   + ++ + L     
Sbjct: 57  IADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCW 116

Query: 197 NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                       A  ++  E    H  +        N  +     +   + + +   
Sbjct: 117 PW------QGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGY 167


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score = 40.5 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  I G+G       ++ FG+++ +       +  ++G   K+  K+ +H 
Sbjct: 200 LKNIPGVGEKTAAKWIREFGSLEEL----VNRIDEVKG---KVGDKLRDHL 243


>gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis]
          Length = 880

 Score = 40.5 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F +V+ +    PE++  + G  KK+  K+   
Sbjct: 194 GVPGVGEKTAIKLLKQFDSVEKL----PESIDEVSG--KKLKEKLEEF 235


>gi|89898693|ref|YP_515803.1| Holliday junction DNA helicase RuvA [Chlamydophila felis Fe/C-56]
 gi|123749524|sp|Q252Y0|RUVA_CHLFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89332065|dbj|BAE81658.1| holliday junction DNA helicase [Chlamydophila felis Fe/C-56]
          Length = 207

 Score = 40.5 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 562 GIGPLRKRLLLQSFGTVKM---ISRS-SPETLASIEGISKKIACKI 603
           G+GP     +L +F  +     I+R+   + LAS+ GI KK A K+
Sbjct: 81  GVGPKTGLAILNTF-ALSKLCSIARAEDVKALASVPGIGKKTAEKL 125


>gi|326203335|ref|ZP_08193200.1| DNA integrity scanning, DisA, linker region [Clostridium
           papyrosolvens DSM 2782]
 gi|325986593|gb|EGD47424.1| DNA integrity scanning, DisA, linker region [Clostridium
           papyrosolvens DSM 2782]
          Length = 361

 Score = 40.5 bits (93), Expect = 0.80,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + ++  F  ++ + ++S E L  +EGI +  A  I    
Sbjct: 308 KNIIGEFQNLQGVVKASIEDLDKVEGIGEVRAKSITEGL 346


>gi|320533798|ref|ZP_08034393.1| comEA protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133989|gb|EFW26342.1| comEA protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 190

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           GT+  I+ +S   L  + GI   +A +I  +
Sbjct: 128 GTI-NINTASASDLEKLPGIGPSLAQRIVEY 157



 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 14/53 (26%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK 598
           A+ S L+++ GIGP   + +++       F        ++ + L  + GI K 
Sbjct: 135 ASASDLEKLPGIGPSLAQRIVEYRDSHGPF--------ATVDALTDVPGIGKA 179


>gi|315226822|ref|ZP_07868610.1| competence protein ComEA [Parascardovia denticolens DSM 10105]
 gi|315120954|gb|EFT84086.1| competence protein ComEA [Parascardovia denticolens DSM 10105]
          Length = 279

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L  I GIGP   + ++    T+K     S + L ++ GI  K   KI  + 
Sbjct: 224 ATSEQLQTIKGIGPSTAKRIIDY-RTMKGPFH-SVDDLLNVSGIGVKTLAKIRAYI 277


>gi|313204519|ref|YP_004043176.1| DNA protecting protein dpra [Paludibacter propionicigenes WB4]
 gi|312443835|gb|ADQ80191.1| DNA protecting protein DprA [Paludibacter propionicigenes WB4]
          Length = 372

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           I GIG    + L+   G+ + +     + LA I GI + ++ +I
Sbjct: 15  IKGIGNNLAKNLIAYVGSAEGVFSEKKQHLAKIPGIGETLSSEI 58


>gi|294787584|ref|ZP_06752837.1| competence protein [Parascardovia denticolens F0305]
 gi|294484940|gb|EFG32575.1| competence protein [Parascardovia denticolens F0305]
          Length = 87

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L  I GIGP   + ++    T+K     S + L ++ GI  K   KI  + 
Sbjct: 32  ATSEQLQTIKGIGPSTAKRIIDY-RTMKGPFH-SVDDLLNVSGIGVKTLAKIRAYI 85


>gi|289425248|ref|ZP_06427025.1| comEA protein [Propionibacterium acnes SK187]
 gi|289154226|gb|EFD02914.1| comEA protein [Propionibacterium acnes SK187]
          Length = 283

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISR-----SSPETLASIEGISKKIACKIYNH 606
            S L+ I+G+GP+         G +    +     +S + L  I GI  K   KI  H
Sbjct: 230 QSELETIDGVGPVMA-------GNIMAWRQEHGQFASVDQLREISGIGAKTFEKIKPH 280


>gi|227828152|ref|YP_002829932.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.14.25]
 gi|227830859|ref|YP_002832639.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           L.S.2.15]
 gi|229579745|ref|YP_002838144.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581586|ref|YP_002839985.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.N.15.51]
 gi|229585381|ref|YP_002843883.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.27]
 gi|238620342|ref|YP_002915168.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.4]
 gi|284998366|ref|YP_003420134.1| DNA repair or recombination protein RadA [Sulfolobus islandicus
           L.D.8.5]
 gi|259551812|sp|C3MZK6|RADA_SULIA RecName: Full=DNA repair and recombination protein radA
 gi|259551815|sp|C4KIT6|RADA_SULIK RecName: Full=DNA repair and recombination protein radA
 gi|259551818|sp|C3MRI1|RADA_SULIL RecName: Full=DNA repair and recombination protein radA
 gi|259551822|sp|C3MY77|RADA_SULIM RecName: Full=DNA repair and recombination protein radA
 gi|259551825|sp|C3NFU5|RADA_SULIN RecName: Full=DNA repair and recombination protein radA
 gi|259551829|sp|C3N7M8|RADA_SULIY RecName: Full=DNA repair and recombination protein radA
 gi|227457307|gb|ACP35994.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           L.S.2.15]
 gi|227459948|gb|ACP38634.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.14.25]
 gi|228010460|gb|ACP46222.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012302|gb|ACP48063.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           Y.N.15.51]
 gi|228020431|gb|ACP55838.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.27]
 gi|238381412|gb|ACR42500.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           M.16.4]
 gi|284446262|gb|ADB87764.1| DNA repair or recombination protein RadA [Sulfolobus islandicus
           L.D.8.5]
 gi|323475205|gb|ADX85811.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           REY15A]
 gi|323477937|gb|ADX83175.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
           HVE10/4]
          Length = 324

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           KK+  +  +++ GI       L+++ + +++ ++ +SP+ L+   GI    A KI
Sbjct: 8   KKSIKTI-NDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKI 61


>gi|84495882|ref|ZP_00994736.1| putative DNA-binding protein [Janibacter sp. HTCC2649]
 gi|84382650|gb|EAP98531.1| putative DNA-binding protein [Janibacter sp. HTCC2649]
          Length = 258

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 14/54 (25%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKI 599
           A  S LD + G+GP+  + +L        F        +S E L  + GI +K+
Sbjct: 203 ADLSALDTLPGVGPVLAQRILDWRTEHGRF--------TSVEELGEVSGIGEKL 248


>gi|330859974|emb|CBX70302.1| DNA ligase B [Yersinia enterocolitica W22703]
          Length = 527

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 569 RLLLQSFGTVKMIS---RSSPETLASIEGISKKIACKIYNHFHK 609
           R L+   G +  +      S E +A++ GI +  A KIY  F +
Sbjct: 407 RELIHH-GFINGLLDWLSLSVEQIAAVPGIGQGRAEKIYQQFQR 449


>gi|329770498|ref|ZP_08261876.1| DNA ligase [Gemella sanguinis M325]
 gi|328836247|gb|EGF85916.1| DNA ligase [Gemella sanguinis M325]
          Length = 666

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 551 KAAYSPLDE------INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
            +  S LD+      I  +G    ++L + +  +  +  ++ + L ++  I    A  + 
Sbjct: 494 NSKNSSLDKVIYALGILNVGKKAAKILAEKYLNLTTLMTATVDELINLPDIGLITAESVI 553

Query: 605 NHFHKNTS 612
           +      +
Sbjct: 554 DFLSNEIN 561


>gi|332159673|ref|YP_004296250.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663903|gb|ADZ40547.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 565

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 569 RLLLQSFGTVKMIS---RSSPETLASIEGISKKIACKIYNHFHK 609
           R L+   G +  +      S E +A++ GI +  A KIY  F +
Sbjct: 445 RELIHH-GFINGLLDWLSLSVEQIAAVPGIGQGRAEKIYQQFQR 487


>gi|318603769|emb|CBY25267.1| DNA ligase, LigB [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 565

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 569 RLLLQSFGTVKMIS---RSSPETLASIEGISKKIACKIYNHFHK 609
           R L+   G +  +      S E +A++ GI +  A KIY  F +
Sbjct: 445 RELIHH-GFINGLLDWLSLSVEQIAAVPGIGQGRAEKIYQQFQR 487


>gi|312136188|ref|YP_004003526.1| helicase, recd/traa family [Caldicellulosiruptor owensensis OL]
 gi|311776239|gb|ADQ05726.1| helicase, RecD/TraA family [Caldicellulosiruptor owensensis OL]
          Length = 741

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I GIG    + ++ +FG     I +  PE L SI G++ +   +I N F
Sbjct: 89  IKGIGQKTAKKIVDTFGDDTARILQEEPEKLLSIRGMTPEKVERIKNMF 137


>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
 gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
          Length = 921

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + LL  FG+++ +  ++ + L 
Sbjct: 188 DNIPGCPGVGEKTAQKLLTEFGSIENLL-ANTDKLK 222


>gi|123440450|ref|YP_001004444.1| NAD-dependent DNA ligase LigB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166226365|sp|A1JHV9|LIGB_YERE8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|122087411|emb|CAL10192.1| putative DNA ligase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 565

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 569 RLLLQSFGTVKMIS---RSSPETLASIEGISKKIACKIYNHFHK 609
           R L+   G +  +      S E +A++ GI +  A KIY  F +
Sbjct: 445 RELIHH-GFINGLLDWLSLSVEQIAAVPGIGQGRAEKIYQQFQR 487


>gi|15889366|ref|NP_355047.1| NAD-dependent DNA ligase LigA [Agrobacterium tumefaciens str. C58]
 gi|166215388|sp|A9CIB3|DNLJ_AGRT5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15157212|gb|AAK87832.1| DNA ligase [Agrobacterium tumefaciens str. C58]
          Length = 724

 Score = 40.5 bits (93), Expect = 0.81,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 17/81 (20%)

Query: 539 RFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTV----KMISRSSP------ET 588
           R AI  HR          L  I  +G    +LL +S+GT     K +  ++         
Sbjct: 549 RRAIDLHR------LIFAL-GIRHVGETTAKLLARSYGTYEHFEKAMKAAADPASDAWAE 601

Query: 589 LASIEGISKKIACKIYNHFHK 609
           L SI+GI + +A  I   + +
Sbjct: 602 LNSIDGIGEVVARAIIEFYKE 622


>gi|316939783|gb|ADU73817.1| helicase, RecD/TraA family [Clostridium thermocellum DSM 1313]
          Length = 708

 Score = 40.5 bits (93), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           K   S L  I GIGP+  + +++ F   T+++I    P+ L  + GI KK    I   + 
Sbjct: 83  KYLGSGL--IKGIGPVNAKRIVKVFKEDTIRVIEE-EPDRLIEVPGIGKKRVEMIKEAWQ 139

Query: 609 K 609
            
Sbjct: 140 N 140


>gi|325203380|gb|ADY98833.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240355]
          Length = 194

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L ++ GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVGGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++R+  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELARAVAEEDVKRLSSAPGIGKKTAER 123


>gi|325135068|gb|EGC57696.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M13399]
          Length = 194

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L ++ GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVGGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++R+  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELARAVAEEDVKRLSSAPGIGKKTAER 123


>gi|240017426|ref|ZP_04723966.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA6140]
 gi|240081568|ref|ZP_04726111.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae FA19]
 gi|240113847|ref|ZP_04728337.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae MS11]
 gi|240126556|ref|ZP_04739442.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           SK-92-679]
 gi|240129018|ref|ZP_04741679.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268597664|ref|ZP_06131831.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA19]
 gi|268599915|ref|ZP_06134082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           MS11]
 gi|268685136|ref|ZP_06151998.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687398|ref|ZP_06154260.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268551452|gb|EEZ46471.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA19]
 gi|268584046|gb|EEZ48722.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           MS11]
 gi|268625420|gb|EEZ57820.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627682|gb|EEZ60082.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 194

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L ++ GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVGGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++R+  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELARAVAEEDVKRLSSAPGIGKKTAER 123


>gi|239627535|ref|ZP_04670566.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517681|gb|EEQ57547.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 245

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIG  R   +++    +G  +     S E + ++ GI      KI +
Sbjct: 190 ATREELMSLRGIGESRAEDIIRYRETYGGFQ-----SIEDIMNVSGIKDAAFEKIKD 241


>gi|85374270|ref|YP_458332.1| DNA ligase [Erythrobacter litoralis HTCC2594]
 gi|123409617|sp|Q2N9V6|DNLJ_ERYLH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|84787353|gb|ABC63535.1| DNA ligase [Erythrobacter litoralis HTCC2594]
          Length = 736

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR------SSPET----LASIEGISKKIACKIYNHFH 608
            I  +G +  R L++ F  +  +        +  E     L SI+GI   +   + + FH
Sbjct: 573 GIRHVGAVTARDLMKYFHELPALRETAEKARAGDEEAVVALTSIDGIGSAVVEALGDFFH 632

Query: 609 KNTSHT 614
           +  +  
Sbjct: 633 EEHNRA 638


>gi|59802051|ref|YP_208763.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           FA 1090]
 gi|194099623|ref|YP_002002754.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999822|ref|ZP_04719746.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae 35/02]
 gi|240014978|ref|ZP_04721891.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI18]
 gi|240116581|ref|ZP_04730643.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID18]
 gi|240118805|ref|ZP_04732867.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID1]
 gi|240122047|ref|ZP_04735009.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID24-1]
 gi|240124344|ref|ZP_04737300.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae PID332]
 gi|254494604|ref|ZP_05107775.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           1291]
 gi|260439658|ref|ZP_05793474.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae DGI2]
 gi|268595632|ref|ZP_06129799.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           35/02]
 gi|268602250|ref|ZP_06136417.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID18]
 gi|268604516|ref|ZP_06138683.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID1]
 gi|268682971|ref|ZP_06149833.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID332]
 gi|291042899|ref|ZP_06568640.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           DGI2]
 gi|293398091|ref|ZP_06642296.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62]
 gi|75355491|sp|Q5F636|RUVA_NEIG1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560109|sp|B4RPG0|RUVA_NEIG2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|59718946|gb|AAW90351.1| putative Holliday junction DNA helicase [Neisseria gonorrhoeae FA
           1090]
 gi|193934913|gb|ACF30737.1| Holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513644|gb|EEH62989.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           1291]
 gi|268549021|gb|EEZ44439.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           35/02]
 gi|268586381|gb|EEZ51057.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID18]
 gi|268588647|gb|EEZ53323.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID1]
 gi|268623255|gb|EEZ55655.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           PID332]
 gi|291013333|gb|EFE05299.1| holliday junction DNA helicase motor protein [Neisseria gonorrhoeae
           DGI2]
 gi|291611354|gb|EFF40424.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae F62]
 gi|317165112|gb|ADV08653.1| Holliday junction DNA helicase RuvA [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 194

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L ++ GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVGGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++R+  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELARAVAEEDVKRLSSAPGIGKKTAER 123


>gi|15676189|ref|NP_273321.1| Holliday junction DNA helicase motor protein [Neisseria
           meningitidis MC58]
 gi|20455266|sp|Q9K1A2|RUVA_NEIMB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|7225489|gb|AAF40719.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis MC58]
 gi|261391796|emb|CAX49251.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 8013]
 gi|316985194|gb|EFV64146.1| holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76]
 gi|325137090|gb|EGC59686.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M0579]
 gi|325139154|gb|EGC61700.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           ES14902]
 gi|325141101|gb|EGC63604.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis CU385]
 gi|325199468|gb|ADY94923.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis H44/76]
 gi|325202908|gb|ADY98362.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           M01-240149]
 gi|325207293|gb|ADZ02745.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           NZ-05/33]
          Length = 194

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L ++ GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVGGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++R+  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELARAVAEEDVKRLSSAPGIGKKTAER 123


>gi|332977850|gb|EGK14603.1| crossover junction ATP-dependent DNA helicase RuvA [Desmospora sp.
           8437]
          Length = 204

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 531 QRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT------VKMISRS 584
           Q +R++AH   +   R+R+ +  +  L E++GIGP      L   G+      V  + + 
Sbjct: 48  QVIREDAH--TLYGFRERQVRDLFRLLLEVSGIGPKVA---LAVTGSGDPGRLVNAVEQE 102

Query: 585 SPETLASIEGISKKIACKI 603
               L  + G+ KK A +I
Sbjct: 103 DLRFLTKLPGVGKKTAQRI 121


>gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 870

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           D I G   IG      ++  +G+V+  + +  E L        + A  +  H+ K
Sbjct: 190 DNIPGVPSIGEKTATKIITEYGSVEN-AYAHVEELK-----PPRAAKALKEHYDK 238


>gi|320546389|ref|ZP_08040704.1| competence protein CelA [Streptococcus equinus ATCC 9812]
 gi|320448774|gb|EFW89502.1| competence protein CelA [Streptococcus equinus ATCC 9812]
          Length = 226

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 556 PLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605
            L  I+GIG  R + ++      G        S + L ++ GI +K   K+  
Sbjct: 174 ELQTISGIGAKRAQDIIDYRDNNGGFS-----SVDDLKNVSGIGEKTLEKLKA 221


>gi|329113314|ref|ZP_08242095.1| DNA repair protein RadC [Acetobacter pomorum DM001]
 gi|326697139|gb|EGE48799.1| DNA repair protein RadC [Acetobacter pomorum DM001]
          Length = 274

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 543 TTHRKR-RKKAAYS---------PLDEINGIGPLRK------RLLLQSFGTVKMISRSSP 586
           T HRKR R++              L+ +  +G  RK      + L+ +FGT++ +  +  
Sbjct: 44  TGHRKRMRQRVLAQGAASLADYELLEMLLYVGIPRKDTKPLAKSLINTFGTLQAVLEAGE 103

Query: 587 ETLASIEGISKKIA 600
           E L  I G+++  A
Sbjct: 104 ENLRQISGVTRASA 117


>gi|309804542|ref|ZP_07698607.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
 gi|309809394|ref|ZP_07703256.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
 gi|312873385|ref|ZP_07733436.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
 gi|308165934|gb|EFO68152.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
 gi|308170305|gb|EFO72336.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
 gi|311091069|gb|EFQ49462.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
          Length = 672

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I+ +G    RL+ Q F  +  I   S   L  I+ I + IA  +  +F + +
Sbjct: 513 GIDHVGAKAARLIAQKFHDLNTIRECSIADLMQIDTIGQTIAESMVKYFEQQS 565


>gi|317130034|ref|YP_004096316.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474982|gb|ADU31585.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Bacillus
           cellulosilyticus DSM 2522]
          Length = 287

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 10/53 (18%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI---YNHFH 608
            + GIG      LL+ +GT++ I       L ++  ++K    KI    +  H
Sbjct: 195 GVKGIGEKTALQLLKKYGTIEGI-------LENLPSLTKAQRNKIETDLDMLH 240


>gi|227498343|ref|ZP_03928493.1| helicase [Acidaminococcus sp. D21]
 gi|226903805|gb|EEH89723.1| helicase [Acidaminococcus sp. D21]
          Length = 722

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I G+GP   + ++  FG  T ++I    PE L  + GI KK A  I
Sbjct: 92  IKGVGPAMAQRIVDCFGEDTFRIIDE-HPERLREVPGIGKKKAEDI 136


>gi|186701986|ref|ZP_02554435.2| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|186700761|gb|EDU19043.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 673

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   + + + F T+  + R++ + L +++   +K A  + N F+  
Sbjct: 515 GIRHVGPNLAKKIAKQFKTMTALMRANFDELTNVDACGEKAASSLINWFNDE 566


>gi|171920195|ref|ZP_02931577.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|171902576|gb|EDT48865.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC
           27813]
          Length = 673

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   + + + F T+  + R++ + L +++   +K A  + N F+  
Sbjct: 515 GIRHVGPNLAKKIAKQFKTMTALMRANFDELTNVDACGEKAASSLINWFNDE 566


>gi|229543939|ref|ZP_04432998.1| conserved hypothetical protein [Bacillus coagulans 36D1]
 gi|229325078|gb|EEN90754.1| conserved hypothetical protein [Bacillus coagulans 36D1]
          Length = 391

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKIYN 605
           PLD + G+GP     LL  FGT   I  R+    L S+  +   ++  I  
Sbjct: 318 PLDFLPGLGPKTMGKLLDHFGTEMNILHRAPESALKSV--VKPPLSELILK 366


>gi|19112907|ref|NP_596115.1| DNA repair endonuclease Swi10 [Schizosaccharomyces pombe 972h-]
 gi|549012|sp|Q06182|SWI10_SCHPO RecName: Full=Mating-type switching protein swi10
 gi|5111|emb|CAA43928.1| SWI10 [Schizosaccharomyces pombe]
 gi|3560148|emb|CAA20735.1| DNA repair endonuclease Swi10 [Schizosaccharomyces pombe]
          Length = 252

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
              S L  I GI       LL  FG+++    +S + L  +EG    
Sbjct: 176 QVQSFLTSIRGINKSDSLSLLSKFGSLERALVASRDELEQLEGWGPT 222


>gi|220932560|ref|YP_002509468.1| Radical SAM domain protein [Halothermothrix orenii H 168]
 gi|219993870|gb|ACL70473.1| Radical SAM domain protein [Halothermothrix orenii H 168]
          Length = 542

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 580 MISRSSPETLASIEGISKKIACKIY 604
            I  ++PE L +I GI KK A  I+
Sbjct: 489 KIKEATPEQLMTIPGIGKKTASNIF 513


>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
 gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
          Length = 937

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKIYNHFHKNTSH 613
            I G+G      LLQ  G+++ + + + + +A++ G   SK +A K+ +  +K+ + 
Sbjct: 192 GIPGVGDKTATALLQGIGSIEKLYQ-NLDDIAAL-GFRGSKTMAKKLAD--NKDNAD 244


>gi|324512204|gb|ADY45060.1| DNA repair protein RAD51 A [Ascaris suum]
          Length = 346

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 562 GIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIY 604
           GI     R L ++ F T + ++ +  + L +I+GIS++ A KIY
Sbjct: 40  GISAADIRKLKEAGFNTFEAVAYAPRKELIAIKGISEQKAEKIY 83


>gi|297538806|ref|YP_003674575.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Methylotenera sp. 301]
 gi|297258153|gb|ADI29998.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Methylotenera sp. 301]
          Length = 215

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L+ ++GIGP++ + ++   +  G  K     S + L  + G+       +  
Sbjct: 27  ATQAELESLDGIGPVKAQAIIDYRKKNGGFK-----SVDELEKVNGVGPVTLQSVRK 78


>gi|188589437|ref|YP_001919945.1| DNA repair protein RadC [Clostridium botulinum E3 str. Alaska E43]
 gi|238689648|sp|B2V090|Y547_CLOBA RecName: Full=UPF0758 protein CLH_0547
 gi|188499718|gb|ACD52854.1| DNA repair protein RadC [Clostridium botulinum E3 str. Alaska E43]
          Length = 229

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL  F  +  I  +S + + SI+GI +  A +I  
Sbjct: 53  RLLSEFQGLDGILEASLDDITSIKGIKEGKASQILA 88


>gi|163749528|ref|ZP_02156776.1| exonuclease IX [Shewanella benthica KT99]
 gi|161330937|gb|EDQ01864.1| exonuclease IX [Shewanella benthica KT99]
          Length = 257

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + GIGP     LL+ F ++  I   S +       +  K A K+
Sbjct: 182 GVPGIGPKSAIELLKRFRSLANIY-LSIDE------VGAKQAKKL 219


>gi|330981936|gb|EGH80039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 787

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           I  +GP   + L   FGT++ I  +    +     + +K A  + + F  + +
Sbjct: 628 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQA--LPEKQAKSVRDFFDDSAN 678



 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  +++ + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|330955486|gb|EGH55746.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae Cit 7]
          Length = 296

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           I  +GP   + L   FGT++ I  +    +     + +K A  + + F  + +
Sbjct: 139 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQA--LPEKQAKSVRDFFDDSAN 189


>gi|311893804|dbj|BAJ26212.1| hypothetical protein KSE_03650 [Kitasatospora setae KM-6054]
          Length = 2817

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 2    SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF 60
            ++   P   G+Y +    G   Y+GK+ N+ +R+      + H  +    +  + ++++
Sbjct: 2728 AASNAPSARGIYIIRYKNGEA-YIGKSKNIHRRL------HEHNRKGK--LGNVASVQY 2777


>gi|317057299|ref|YP_004105766.1| helicase, RecD/TraA family [Ruminococcus albus 7]
 gi|315449568|gb|ADU23132.1| helicase, RecD/TraA family [Ruminococcus albus 7]
          Length = 752

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            LD +    P+  + L+ +FG+  +++I    PE L  + GI  K A  I+  F K
Sbjct: 90  ALDSVK---PVTAKRLVAAFGSDTLEIIEN-EPERLTEVNGIDAKKADAIHEDFKK 141


>gi|294791537|ref|ZP_06756694.1| competence protein CelA [Scardovia inopinata F0304]
 gi|294458008|gb|EFG26362.1| competence protein CelA [Scardovia inopinata F0304]
          Length = 171

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 14/57 (24%)

Query: 557 LDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L+ I GIGP + + ++        F        SS + L  + GI  K    I +  
Sbjct: 119 LETIKGIGPAKAQKIIDYRNQHGRF--------SSVDDLLHVSGIGSKTLASIRDFI 167


>gi|161870798|ref|YP_001599971.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis 053442]
 gi|189045759|sp|A9M3B7|RUVA_NEIM0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161596351|gb|ABX74011.1| Holliday junction DNA helicase [Neisseria meningitidis 053442]
 gi|308388484|gb|ADO30804.1| Holliday junction DNA helicase [Neisseria meningitidis alpha710]
 gi|325130991|gb|EGC53718.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           OX99.30304]
 gi|325131591|gb|EGC54298.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis M6190]
 gi|325143104|gb|EGC65451.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           961-5945]
 gi|325143174|gb|EGC65520.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis
           961-5945]
 gi|325197549|gb|ADY93005.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis G2136]
          Length = 194

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L ++ GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVGGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123


>gi|154503552|ref|ZP_02040612.1| hypothetical protein RUMGNA_01376 [Ruminococcus gnavus ATCC 29149]
 gi|260589935|ref|ZP_05855848.1| helicase, RecD/TraA family [Blautia hansenii DSM 20583]
 gi|153795652|gb|EDN78072.1| hypothetical protein RUMGNA_01376 [Ruminococcus gnavus ATCC 29149]
 gi|260539742|gb|EEX20311.1| helicase, RecD/TraA family [Blautia hansenii DSM 20583]
          Length = 747

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            + GIGP     ++  FG  T++++ +  P+ L  I+GIS+K   +I + F KN
Sbjct: 100 SLKGIGPKTAERIVDRFGLDTLEVMEK-YPQELLKIQGISQKKLDRIVDSFGKN 152


>gi|227545005|ref|ZP_03975054.1| competence protein comEA [Lactobacillus reuteri CF48-3A]
 gi|300909960|ref|ZP_07127420.1| competence protein comEA [Lactobacillus reuteri SD2112]
 gi|68160748|gb|AAY86820.1| lr0776 [Lactobacillus reuteri]
 gi|227185022|gb|EEI65093.1| competence protein comEA [Lactobacillus reuteri CF48-3A]
 gi|300892608|gb|EFK85968.1| competence protein comEA [Lactobacillus reuteri SD2112]
          Length = 210

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L +I GIG  +  L+LQ       F ++        + L  I G  +K   K+ +
Sbjct: 155 ATKEQLCQITGIGDKKADLILQYRQEHGQFKSI--------DELKEINGFGEKTVAKLKD 206

Query: 606 HF 607
           H 
Sbjct: 207 HL 208


>gi|66045063|ref|YP_234904.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           B728a]
 gi|75502608|sp|Q4ZVF6|DNLJ_PSEU2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|63255770|gb|AAY36866.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. syringae B728a]
          Length = 787

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           I  +GP   + L   FGT++ I  +    +     + +K A  + + F  + +
Sbjct: 628 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQA--LPEKQAKSVRDFFDDSAN 678


>gi|218768952|ref|YP_002343464.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis Z2491]
 gi|20455265|sp|Q9JSM5|RUVA_NEIMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|121052960|emb|CAM09314.1| Holliday junction DNA helicase [Neisseria meningitidis Z2491]
 gi|254671573|emb|CBA09225.1| holliday junction DNA helicase [Neisseria meningitidis alpha153]
 gi|319411250|emb|CBY91657.1| Holliday junction DNA helicase RuvA [Neisseria meningitidis WUE
           2594]
          Length = 194

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +  +R++AH    FA    RK      +  L ++ GIG      +L
Sbjct: 36  YNLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVGGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123


>gi|148543875|ref|YP_001271245.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Lactobacillus reuteri DSM 20016]
 gi|184153275|ref|YP_001841616.1| DNA internalization-related competence protein ComEA [Lactobacillus
           reuteri JCM 1112]
 gi|227364781|ref|ZP_03848830.1| competence protein comEA [Lactobacillus reuteri MM2-3]
 gi|325682592|ref|ZP_08162109.1| competence protein ComEA [Lactobacillus reuteri MM4-1A]
 gi|148530909|gb|ABQ82908.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Lactobacillus reuteri DSM 20016]
 gi|183224619|dbj|BAG25136.1| DNA internalization-related competence protein ComEA [Lactobacillus
           reuteri JCM 1112]
 gi|227070240|gb|EEI08614.1| competence protein comEA [Lactobacillus reuteri MM2-3]
 gi|324978431|gb|EGC15381.1| competence protein ComEA [Lactobacillus reuteri MM4-1A]
          Length = 210

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L +I GIG  +  L+LQ       F ++        + L  I G  +K   K+ +
Sbjct: 155 ATKEQLCQITGIGDKKADLILQYRQEHGQFKSI--------DELKEINGFGEKTVAKLKD 206

Query: 606 HF 607
           H 
Sbjct: 207 HL 208


>gi|85717519|ref|ZP_01048465.1| Helicase RecD/TraA [Nitrobacter sp. Nb-311A]
 gi|85695672|gb|EAQ33584.1| Helicase RecD/TraA [Nitrobacter sp. Nb-311A]
          Length = 740

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG +  + L++ FG  V  I   +PE L  +EGI    A +I
Sbjct: 99  IRGIGAVYAKRLVKQFGKDVFDIIEETPERLREVEGIGPIRAARI 143


>gi|116628251|ref|YP_820870.1| late competence protein required for DNA binding and uptake
           [Streptococcus thermophilus LMD-9]
 gi|116101528|gb|ABJ66674.1| DNA uptake protein or related DNA-binding protein [Streptococcus
           thermophilus LMD-9]
          Length = 231

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L  I+GIG  R   ++      G  +     S + L ++ GI  K   KI    
Sbjct: 175 ATSEQLQTISGIGAKRAEDVIAYRESHGGFQ-----SVDDLKNVSGIGDKTLDKIRESL 228


>gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 870

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           D I G   IG      ++  +G+V+  + +  E L        + A  +  H+ K
Sbjct: 190 DNIPGVPSIGEKTATKIITEYGSVEN-AYAHVEELK-----PPRAAKALKEHYDK 238


>gi|251780848|ref|ZP_04823768.1| DNA repair protein RadC [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085163|gb|EES51053.1| DNA repair protein RadC [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 229

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL  F  +  I  +S + + SI+GI +  A +I  
Sbjct: 53  RLLSEFQGLDGILEASLDDITSIKGIKEGKASQILA 88


>gi|167564063|ref|ZP_02356979.1| Holliday junction DNA helicase motor protein [Burkholderia
           oklahomensis EO147]
 gi|167571207|ref|ZP_02364081.1| Holliday junction DNA helicase motor protein [Burkholderia
           oklahomensis C6786]
          Length = 193

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 25/99 (25%)

Query: 518 LVLNMRDPILYFIQRL--RDEAHRFAITTHRKR-------RKKAAYSPLDEINGIGPLRK 568
             L      +  + +L  R++AH                 ++++ +  L +I G+G    
Sbjct: 36  YNLPHTSEKVVLLTQLIVREDAH---------LLYGFLTPQERSTFRELLKITGVGARMA 86

Query: 569 RLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
             +L   G +V  +S++ + +    L  + GI KK A +
Sbjct: 87  LAVLS--GMSVAELSQAVTLQDAARLTRVPGIGKKTAER 123


>gi|160941943|ref|ZP_02089268.1| hypothetical protein CLOBOL_06837 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435150|gb|EDP12917.1| hypothetical protein CLOBOL_06837 [Clostridium bolteae ATCC
           BAA-613]
          Length = 763

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ F   T   I    PE L+ ++G+S+K+A  I
Sbjct: 90  IKGIGAALAARIVRHFKADTF-RIMEEEPERLSEVKGVSEKMAMAI 134


>gi|241758482|ref|ZP_04756602.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Neisseria flavescens SK114]
 gi|241759377|ref|ZP_04757482.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241759559|ref|ZP_04757662.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241759963|ref|ZP_04758062.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241760174|ref|ZP_04758271.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241319371|gb|EER55829.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241319649|gb|EER56069.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241320116|gb|EER56477.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241320322|gb|EER56641.1| competence protein ComEA helix-hairpin-helix repeat region
           [Neisseria flavescens SK114]
 gi|241321385|gb|EER57526.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Neisseria flavescens SK114]
          Length = 100

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + +++       F +V        E L +++GI   +  K+  
Sbjct: 35  ELEALPGIGPAKAKSIVEYRQKNGAFKSV--------EELKNVKGIGDAVLNKLKA 82



 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 13/57 (22%)

Query: 569 RLLLQSF--GTVK-----------MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           + L++ F  G               I+ +S   L ++ GI    A  I  +  KN +
Sbjct: 3   KNLMKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGA 59


>gi|225076037|ref|ZP_03719236.1| hypothetical protein NEIFLAOT_01064 [Neisseria flavescens
           NRL30031/H210]
 gi|224952631|gb|EEG33840.1| hypothetical protein NEIFLAOT_01064 [Neisseria flavescens
           NRL30031/H210]
          Length = 108

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + +++       F +V        E L +++GI   +  K+  
Sbjct: 43  ELEALPGIGPAKAKSIVEYRQKNGAFKSV--------EELKNVKGIGDAVLNKLKA 90


>gi|221484889|gb|EEE23179.1| DNA repair protein Rad10 domain-containing protein, putative
           [Toxoplasma gondii GT1]
          Length = 424

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           FG VK I  +S + L    GI +K A +I  
Sbjct: 338 FGNVKNILLASRQALERCPGIGEKKARRILK 368


>gi|237835939|ref|XP_002367267.1| DNA repair protein rad10 domain-containing protein [Toxoplasma
           gondii ME49]
 gi|211964931|gb|EEB00127.1| DNA repair protein rad10 domain-containing protein [Toxoplasma
           gondii ME49]
 gi|221506056|gb|EEE31691.1| DNA repair protein Rad10 domain-containing protein, putative
           [Toxoplasma gondii VEG]
          Length = 409

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           FG VK I  +S + L    GI +K A +I  
Sbjct: 323 FGNVKNILLASRQALERCPGIGEKKARRILK 353


>gi|153872826|ref|ZP_02001606.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
 gi|152070708|gb|EDN68394.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
          Length = 670

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G      L QSFG ++ +  ++   L  I+ I   +A  I   F ++
Sbjct: 522 VGESTAHTLAQSFGRLEKLIPATEADLEQIQDIGPIVAKHIVTFFQQS 569



 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKK 598
           AI     RR         +I+G+G      L+ +     +  I   + E  A++E +  K
Sbjct: 441 AIQHFASRRA-------MDIDGLGEKLVEQLINNELVKNIADIYTLNHEQWANLERMGPK 493

Query: 599 IACKIYNHFHKNTSHT 614
            A  I     K+ S T
Sbjct: 494 SAENIIKALEKSQSTT 509


>gi|145300082|ref|YP_001142923.1| exodeoxyribonuclease IX [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|156630377|sp|A4SQK3|XNI_AERS4 RecName: Full=Protein Xni
 gi|142852854|gb|ABO91175.1| exodeoxyribonuclease IX [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 265

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           S +  + GIGP     LLQ +G++  +  +  + 
Sbjct: 184 SNIKGVPGIGPKTATQLLQQYGSLSALLAACQQE 217


>gi|15835402|ref|NP_297161.1| Holliday junction DNA helicase motor protein [Chlamydia muridarum
           Nigg]
 gi|270285581|ref|ZP_06194975.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg]
 gi|270289591|ref|ZP_06195893.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Weiss]
 gi|301336977|ref|ZP_07225179.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum MopnTet14]
 gi|13431873|sp|Q9PJP0|RUVA_CHLMU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|7190816|gb|AAF39591.1| Holliday junction DNA helicase RuvA [Chlamydia muridarum Nigg]
          Length = 200

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 562 GIGPLRKRLLLQSFG-----TVKMISRSSPETLASIEGISKKIACKI 603
           GIGP     +L  F      +V  +     + +AS+ GI KK A K+
Sbjct: 81  GIGPKTGLAILNMFPLQELCSVARLEN--VKAIASVPGIGKKTAEKL 125


>gi|304316916|ref|YP_003852061.1| DNA protecting protein DprA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778418|gb|ADL68977.1| DNA protecting protein DprA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 362

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 550 KKAAYSP-LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K   YS  L  +N +G    + L+  F + + + +S  E L ++   + ++   I + 
Sbjct: 3   KNKIYSIWLSSVNNVGAKTYKKLIDYFESAENVYKSDNEELKNVVN-NIRVYKNILDA 59


>gi|163797452|ref|ZP_02191403.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
 gi|159177201|gb|EDP61760.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
          Length = 713

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           I GIGP+  R ++++FG  V  I  + PE L  + GI +  A +I + 
Sbjct: 80  IRGIGPVYARKMVKAFGEKVFDIIEAEPERLREVTGIGQVRAKRITDA 127


>gi|15147277|ref|NP_150350.1| orf511 [Rhizophydium sp. 136]
 gi|15100119|gb|AAK84280.1|AF404306_22 orf511 [Rhizophydium sp. 136]
          Length = 511

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 2   SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRF- 60
             ++    PG Y   +       +G++ +L  R+K Y        R T     + ++ F 
Sbjct: 88  KLKEYKNLPGCYIFTNCNNGYQLIGESKDLGIRLKDYFSEKEFRKRKTPFFKDLKDLGFK 147

Query: 61  ------TVTCTEVEALLLEANMIKRLKPRFNIL 87
                  V  ++ +AL LE   +K    ++N  
Sbjct: 148 NFTLTIIVLDSKEDALNLEFFYLKNYICKYNTK 180


>gi|11467585|ref|NP_043731.1| hypothetical protein AlmafMp12 [Allomyces macrogynus]
 gi|459018|gb|AAA64933.1| ORF360 [Allomyces macrogynus]
 gi|1236415|gb|AAC49232.1| GIY-YIG orf [Allomyces macrogynus]
          Length = 359

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYM 39
          GVY  ++      YVG + NL  R+  Y 
Sbjct: 50 GVYIWINKENGKRYVGSSINLANRLNYYF 78


>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
 gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
          Length = 949

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 18/76 (23%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA-----SIE-----GI-SKKIACKI 603
           D I G   +G    +  L+ +G ++ +  ++   +       +E     GI SKK+A  I
Sbjct: 206 DNIPGLDGVGEKTAKKFLKEYGNIENLL-ANTHEIKGKLREKVEASAERGILSKKLATII 264

Query: 604 YNH---FHKNTSHTPT 616
            +    FH+      T
Sbjct: 265 CDAPIEFHQEQYDLET 280


>gi|149182756|ref|ZP_01861220.1| late competence protein (DNA binding and uptake) [Bacillus sp.
           SG-1]
 gi|148849522|gb|EDL63708.1| late competence protein (DNA binding and uptake) [Bacillus sp.
           SG-1]
          Length = 202

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 14/54 (25%)

Query: 558 DEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D + GIGP + + +++       F         + E L  + GI +    ++  
Sbjct: 152 DGLPGIGPAKAKAIIEYRKENGPFK--------AVEELKDVTGIGEATFERLKE 197


>gi|254496287|ref|ZP_05109175.1| hypothetical protein LDG_1023 [Legionella drancourtii LLAP12]
 gi|254354493|gb|EET13140.1| hypothetical protein LDG_1023 [Legionella drancourtii LLAP12]
          Length = 107

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 551 KAAYSPLD-EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           KA  S L     GIG  R   ++    + +     S E LA ++GI +
Sbjct: 45  KADASSLTGSFKGIGKKRADAIIAYRDSHQGFK--SIEELAEVKGIGQ 90


>gi|163797183|ref|ZP_02191137.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
 gi|159177478|gb|EDP62032.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
          Length = 496

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           I GIGP+  R L+++FG  V  +  ++P  L  + GI +  A +I + 
Sbjct: 80  IRGIGPVYARKLVKAFGEKVFDVIEAAPARLREVTGIGQVRAKRITDA 127


>gi|94499761|ref|ZP_01306297.1| DNA repair protein RadC [Oceanobacter sp. RED65]
 gi|94427962|gb|EAT12936.1| DNA repair protein RadC [Oceanobacter sp. RED65]
          Length = 223

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 12/66 (18%)

Query: 559 EINGIGPL-RKRLLLQSFGTVKMISRSSPETLASIEGISKK----------IACK-IYNH 606
            I G+  +   R L++ FG++K +  +  E    + G+             +A + +Y  
Sbjct: 37  GIPGLSAVELARDLIRRFGSLKNLFGTPLEEFCQVPGLGPAKYVQLQAVLEMAKRHLYES 96

Query: 607 FHKNTS 612
             K   
Sbjct: 97  LEKGEG 102


>gi|325125522|gb|ADY84852.1| Metallo beta subunit lactamase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 570

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 6   MPECP----GVYQ---MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR----ITHMISQ 54
           +P       G Y      +  GR++  GKA NL  R++   ++   T R        +++
Sbjct: 201 LPNASENEVGTYITNVFRNAKGRIIVAGKASNL-NRVQQVFNAAAATGRRVLLTGRDVAK 259

Query: 55  INN 57
           I +
Sbjct: 260 IVH 262


>gi|261822676|ref|YP_003260782.1| DNA polymerase IV [Pectobacterium wasabiae WPP163]
 gi|261606689|gb|ACX89175.1| DNA-directed DNA polymerase [Pectobacterium wasabiae WPP163]
          Length = 352

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL++I G+G +  +                    LL+ FG    +           + SP
Sbjct: 177 PLEKIPGVGKVTAKRLEERGLYTCTDVRGYALADLLKEFGKFGRVLWERCQGIDDRQISP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  I++ 
Sbjct: 237 DRLRKSVGVEKTLAQDIHDW 256


>gi|38606901|gb|AAR25441.1| metallo beta subunit lactamase [Lactobacillus delbrueckii]
          Length = 470

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 6   MPECP----GVYQ---MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR----ITHMISQ 54
           +P       G Y      +  GR++  GKA NL  R++   ++   T R        +++
Sbjct: 194 LPNASENEVGTYITNVFRNAKGRIIVAGKASNL-NRVQQVFNAAAATGRRVLLTGRDVAK 252

Query: 55  INN 57
           I +
Sbjct: 253 IVH 255


>gi|307320648|ref|ZP_07600061.1| hypothetical protein SinmeDRAFT_4519 [Sinorhizobium meliloti AK83]
 gi|306893683|gb|EFN24456.1| hypothetical protein SinmeDRAFT_4519 [Sinorhizobium meliloti AK83]
          Length = 296

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 20/99 (20%)

Query: 7   PECPGVYQMLDIAGRVLYVG-KAYNLQKRIKSYMHSNNH---THRITHMISQI----NNI 58
           P   GVY  + +   V+YVG     L+ R+ +Y   +       R+  +I +       +
Sbjct: 197 PADKGVYAFI-VDDIVMYVGLTQRGLRGRLNAYRRGHEKQRTNARVKTLILEALSSGKRV 255

Query: 59  RFTVTCTEVE----------ALLLEANMIKRLKPRFNIL 87
           +  +  T  E          A  LEA +I  ++P++NIL
Sbjct: 256 K-VLVATPQESSWNGIPVDTAAGLEAGLIAMIQPKWNIL 293


>gi|227547370|ref|ZP_03977419.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|312132627|ref|YP_003999966.1| comea [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482797|ref|ZP_07941807.1| competence protein ComEA helix-hairpin-helix repeat region
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689325|ref|YP_004209059.1| hypothetical protein BLIF_1139 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691337|ref|YP_004220907.1| hypothetical protein BLLJ_1148 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|227212185|gb|EEI80081.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|311773576|gb|ADQ03064.1| ComEA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915759|gb|EFV37171.1| competence protein ComEA helix-hairpin-helix repeat region
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456193|dbj|BAJ66815.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460661|dbj|BAJ71281.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 165

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 12/49 (24%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKI 599
            L  I GIGP+  + ++           +     S + L  ++GI  K 
Sbjct: 113 ELQSIKGIGPVTAQRIIDH-------RTAIGGYTSVDQLLDVKGIGSKT 154


>gi|239621301|ref|ZP_04664332.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515762|gb|EEQ55629.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291516779|emb|CBK70395.1| competence protein ComEA helix-hairpin-helix repeat region
           [Bifidobacterium longum subsp. longum F8]
          Length = 259

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 12/49 (24%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKI 599
            L  I GIGP+  + ++           +     S + L  ++GI  K 
Sbjct: 207 ELQSIKGIGPVTAQRIIDH-------RTAIGGYTSVDQLLDVKGIGSKT 248


>gi|189439192|ref|YP_001954273.1| DNA uptake protein [Bifidobacterium longum DJO10A]
 gi|189427627|gb|ACD97775.1| DNA uptake protein [Bifidobacterium longum DJO10A]
          Length = 234

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 12/49 (24%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKI 599
            L  I GIGP+  + ++           +     S + L  ++GI  K 
Sbjct: 182 ELQSIKGIGPVTAQRIIDH-------RTAIGGYTSVDQLLDVKGIGSKT 223


>gi|195867759|ref|ZP_03079760.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|195660614|gb|EDX53870.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
          Length = 673

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   + L + F T+  +  ++ + L +++   +K A  + N F+ +
Sbjct: 515 GIRHVGPNLAKKLAKQFKTMTTLMHANFDELTNVDACGEKAALSLINWFNDD 566


>gi|188524111|ref|ZP_03004188.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|198273308|ref|ZP_03205844.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|195659974|gb|EDX53354.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|198249828|gb|EDY74608.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
          Length = 673

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   + L + F T+  +  ++ + L +++   +K A  + N F+ +
Sbjct: 515 GIRHVGPNLAKKLAKQFKTMTTLMHANFDELTNVDACGEKAALSLINWFNDD 566


>gi|111221574|ref|YP_712368.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a]
 gi|111149106|emb|CAJ60789.1| Holliday junction DNA helicase RuvA [Frankia alni ACN14a]
          Length = 252

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTV---KMISRSSPET----LASIEGISKKIACK 602
            +  +  L    G+GP   + +L     V     + R+  E     L  + GI +K A +
Sbjct: 67  ARDVFEILQSAAGVGPKLAQAVL----GVHEPDAVRRAVAEEDLAALTKVPGIGRKGAQR 122

Query: 603 I 603
           I
Sbjct: 123 I 123


>gi|23466007|ref|NP_696610.1| hypothetical protein BL1451 [Bifidobacterium longum NCC2705]
 gi|23326725|gb|AAN25246.1| hypothetical protein with C-terminal helix hairpin helix domain
           like that in ComE [Bifidobacterium longum NCC2705]
          Length = 259

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 12/49 (24%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKI 599
            L  I GIGP+  + ++           +     S + L  ++GI  K 
Sbjct: 207 ELQSIKGIGPVTAQRIIDH-------RTAIGGYTSVDQLLDVKGIGSKT 248


>gi|46191301|ref|ZP_00120477.2| COG1555: DNA uptake protein and related DNA-binding proteins
           [Bifidobacterium longum DJO10A]
          Length = 229

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 12/49 (24%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKI 599
            L  I GIGP+  + ++           +     S + L  ++GI  K 
Sbjct: 177 ELQSIKGIGPVTAQRIIDH-------RTAIGGYTSVDQLLDVKGIGSKT 218


>gi|331015921|gb|EGH95977.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 787

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           I  +GP   + L   FGT++ +  +    +     + +K A  + + F  N +
Sbjct: 628 IPSVGPGAAQKLADRFGTLEAVISADWLDMRQT--LPEKQAKSVRDFFDDNAN 678



 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|312962450|ref|ZP_07776941.1| DNA ligase [Pseudomonas fluorescens WH6]
 gi|311283377|gb|EFQ61967.1| DNA ligase [Pseudomonas fluorescens WH6]
          Length = 789

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  +++ + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLERVRKALPEVLTYLPDVGLEVAHEIHSFF 583


>gi|238898994|ref|YP_002924676.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259495647|sp|C4K7I5|RUVA_HAMD5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229466754|gb|ACQ68528.1| Holliday junction helicase, subunit A [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 204

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 543 TTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLA---SIEGISKKI 599
             H  + ++A +S L ++NG+GP     +L    + + I     E ++    + G+ KK 
Sbjct: 62  GFHHPK-ERAMFSELIKVNGVGPKLGLAILSGMSSEEFICALEKEDISNLIKLPGVGKKT 120

Query: 600 ACKIY 604
           A ++ 
Sbjct: 121 AERLL 125


>gi|213968905|ref|ZP_03397045.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
 gi|301385372|ref|ZP_07233790.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063632|ref|ZP_07255173.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato K40]
 gi|302133897|ref|ZP_07259887.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926204|gb|EEB59759.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
          Length = 787

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           I  +GP   + L   FGT++ +  +    +     + +K A  + + F  N +
Sbjct: 628 IPSVGPGAAQKLADRFGTLEAVISADWLDMRQT--LPEKQAKSVRDFFDDNAN 678



 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|28870811|ref|NP_793430.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81730313|sp|Q87YY6|DNLJ_PSESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|28854060|gb|AAO57125.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 787

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           I  +GP   + L   FGT++ +  +    +     + +K A  + + F  N +
Sbjct: 628 IPSVGPGAAQKLADRFGTLEAVISADWLDMRQT--LPEKQAKSVRDFFDDNAN 678



 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 15/62 (24%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL-----------ASIEGISKKIACKI 603
           D I G   IG     +L++ +G+V+ I + + + L             I  +SKK+A  I
Sbjct: 189 DNIPGVAGIGEKTASVLIKEYGSVEEILK-NIDKLSPRHQKLLRGNEEIALLSKKLATII 247

Query: 604 YN 605
            +
Sbjct: 248 RD 249


>gi|332799633|ref|YP_004461132.1| helicase, RecD/TraA family [Tepidanaerobacter sp. Re1]
 gi|332697368|gb|AEE91825.1| helicase, RecD/TraA family [Tepidanaerobacter sp. Re1]
          Length = 733

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIGP   + +++ FG  T++++S  SPE L S+ GI +K    I
Sbjct: 90  IRGIGPTMAKKIVKEFGEKTLEVLSN-SPEKLLSVPGIGEKKLKMI 134


>gi|327330753|gb|EGE72499.1| ComE operon protein 1 [Propionibacterium acnes HL097PA1]
          Length = 283

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 14/59 (23%)

Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            S  + I+G+GP+    ++        F        +S + L  I GI  K   KI  H
Sbjct: 230 QSEFETIDGVGPVTAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPH 280


>gi|313813082|gb|EFS50796.1| comEA protein [Propionibacterium acnes HL025PA1]
          Length = 283

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 14/59 (23%)

Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            S  + I+G+GP+    ++        F        +S + L  I GI  K   KI  H
Sbjct: 230 QSEFETIDGVGPVTAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPH 280


>gi|313669264|ref|YP_004049548.1| Holliday junction DNA helicase [Neisseria lactamica ST-640]
 gi|313006726|emb|CBN88196.1| Holliday junction DNA helicase [Neisseria lactamica 020-06]
          Length = 194

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 15/93 (16%)

Query: 519 VLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQ 573
            L      +    +  +R++AH    FA    RK      +  L ++ GIG      +L 
Sbjct: 37  NLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVGGIGAKTALGILS 91

Query: 574 SFGTVKMISRSSPET----LASIEGISKKIACK 602
           +  T   ++R+  E     L+S  GI KK A +
Sbjct: 92  AM-TADELARAVAEEDVKRLSSAPGIGKKTAER 123


>gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
 gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
          Length = 879

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F +V+ +   S + ++      KK+  K+  +
Sbjct: 194 GVPGVGEKTAIKLLKQFHSVEKLLD-SIDEVS-----GKKLKEKLGEY 235


>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
 gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
          Length = 892

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMI 581
            + GIG +  + LLQ FG++  +
Sbjct: 191 GVPGIGEVTAKKLLQEFGSLDEL 213


>gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
 gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
          Length = 875

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++S++
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQVSSVK 223


>gi|228935773|ref|ZP_04098585.1| DNA repair protein radC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823830|gb|EEM69650.1| DNA repair protein radC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 225

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELISIHGVGVAKATQLIAAF 87


>gi|226309777|ref|YP_002769671.1| DNA integrity scanning protein DisA [Brevibacillus brevis NBRC
           100599]
 gi|226092725|dbj|BAH41167.1| DNA integrity scanning protein DisA [Brevibacillus brevis NBRC
           100599]
          Length = 358

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L++ F  +  I  ++ + L  +EGI +  A  I     +
Sbjct: 308 NLVEHFHHLPRIMMATIQELDEVEGIGEVRARAIKEGLKR 347


>gi|261400495|ref|ZP_05986620.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC
           23970]
 gi|269209755|gb|EEZ76210.1| holliday junction DNA helicase RuvA [Neisseria lactamica ATCC
           23970]
          Length = 194

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 15/93 (16%)

Query: 519 VLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQ 573
            L      +    +  +R++AH    FA    RK      +  L ++ GIG      +L 
Sbjct: 37  NLPPVGESVQLFTQLIIREDAHLLFGFATAEERK-----TFRQLIKVGGIGAKTALGILS 91

Query: 574 SFGTVKMISRSSPET----LASIEGISKKIACK 602
           +  T   ++R+  E     L+S  GI KK A +
Sbjct: 92  AM-TADELARAVAEEDVKRLSSAPGIGKKTAER 123


>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
 gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
          Length = 892

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMI 581
            + GIG +  + LLQ FG++  +
Sbjct: 191 GVPGIGEVTAKKLLQEFGSLDEL 213


>gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford]
 gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford]
          Length = 872

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+++ I   S + ++S++
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSIENIFN-SLDQVSSVK 223


>gi|315638295|ref|ZP_07893476.1| competence protein ComEA [Campylobacter upsaliensis JV21]
 gi|315481642|gb|EFU72265.1| competence protein ComEA [Campylobacter upsaliensis JV21]
          Length = 79

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 13/59 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIG  + R +L       F ++        E L  ++GI +K   ++ +
Sbjct: 24  ATLEELKSLKGIGETKARAILDYRKEQNFTSI--------EELKKVKGIGEKTFEELKD 74


>gi|227887127|ref|ZP_04004932.1| chaperonin [Escherichia coli 83972]
 gi|227835477|gb|EEJ45943.1| chaperonin [Escherichia coli 83972]
 gi|307554144|gb|ADN46919.1| putative chaperonin [Escherichia coli ABU 83972]
          Length = 646

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK        ++      E      RD     +  L+D A           R++     
Sbjct: 471 IAKRTILEKMKDEILGLPEEE----KRD-----LAALQDTA-----------RERQKQKF 510

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      ++G    +   + +  
Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHLTQAVIDWK 566

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 567 ASCERRFVFRPNEAVTP 583


>gi|169830397|ref|YP_001716379.1| DNA integrity scanning protein DisA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637241|gb|ACA58747.1| protein of unknown function DUF147 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 358

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             L+  F  +  +  +S + L  +EGI +  A  I    
Sbjct: 307 ENLVSVFANLNKVLNASLDELDEVEGIGETRARSIKEGL 345


>gi|145504535|ref|XP_001438237.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405403|emb|CAK70840.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1647

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 27/304 (8%), Positives = 70/304 (23%), Gaps = 18/304 (5%)

Query: 126  ASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVH 185
             +     +  N         +   +  ++ +  CL+  + +C     G    E   + + 
Sbjct: 768  PNTRQCVEMCNCKDLVSLQNNDCYNCIQNCSSECLVCILDKCYACLEGWQLIEHKCQQIC 827

Query: 186  -------EAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSI 238
                    + +    GNH +++     + Q      +       + L   S+ +  +   
Sbjct: 828  GDNQVALTSNEQCDDGNHIIEDGCNECLFQCRPYCQF--CNKELNCLICESNFKLVHHLC 885

Query: 239  YNRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSEST-NAQILSYFLRQFYTDK 297
                    +              + G                +   Q +     +F   K
Sbjct: 886  APICGDKIVISGLEECDDGNDIKYDGCFECQFQCNFGCKICESGKCQDVCKVEEEFINGK 945

Query: 298  PCPENILLSEEAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALIN--------AH 349
              P  ++ SEE +       +          +              +  N          
Sbjct: 946  CIPIVLIESEEIDPNQSECKNHCLVCDGANCLRCKPDYILENNKCFSCGNGIITKDEECD 1005

Query: 350  RSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVK 409
              +        +   I +D+    +   + +   I   S +   S      V        
Sbjct: 1006 DGNRINSDGCSNQCKIEEDWNCIDSFSFLSQCFPIAKISIVFLNSTYNTQYVKLSYTKKV 1065

Query: 410  NQYR 413
               +
Sbjct: 1066 KLNQ 1069


>gi|78777542|ref|YP_393857.1| NAD-dependent DNA ligase LigA [Sulfurimonas denitrificans DSM 1251]
 gi|123768611|sp|Q30QV9|DNLJ_SULDN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|78498082|gb|ABB44622.1| DNA ligase (NAD+) [Sulfurimonas denitrificans DSM 1251]
          Length = 652

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  IG +  + L   FG+      ++ + + + +G+ +++A  +      N
Sbjct: 503 GIEHIGEVASKTLSAKFGS--GFIDATKDEIVACDGVGEEMAESLLEFIRVN 552


>gi|114330795|ref|YP_747017.1| DNA repair protein RadC [Nitrosomonas eutropha C91]
 gi|122314267|sp|Q0AHY0|Y782_NITEC RecName: Full=UPF0758 protein Neut_0782
 gi|114307809|gb|ABI59052.1| DNA replication and repair protein RadC [Nitrosomonas eutropha C91]
          Length = 224

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598
           R LL  FG++  +  ++    + + G+   
Sbjct: 48  RNLLTHFGSLTKLCAANLHEFSKLPGMGPA 77


>gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205]
          Length = 985

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G+   GP     LLQ++G +  I  +  E L +
Sbjct: 206 DNIPGVKGVGPKTAINLLQAYGDLDGIYAA-LEQLEA 241


>gi|300867541|ref|ZP_07112191.1| DNA ligase [Oscillatoria sp. PCC 6506]
 gi|300334429|emb|CBN57361.1| DNA ligase [Oscillatoria sp. PCC 6506]
          Length = 690

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  +G +   LL + F  V+ ++ +S  T+  + GI  +IA  +Y  F 
Sbjct: 535 GIRHVGSVNAVLLTERFPDVEQLAAASAATIEGVYGIGPEIAQSVYQWFQ 584



 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +INGIG    + L    L    +V  I   + E L ++E + KK+A K+
Sbjct: 469 DINGIGEKLVQQLVDSNLVH--SVADIYDLTVERLMNLERMGKKLADKL 515


>gi|291458126|ref|ZP_06597516.1| helicase, RecD/TraA family [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291419294|gb|EFE93013.1| helicase, RecD/TraA family [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 751

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           + GIGP     +++ FG  T+++IS   PE L+ I GIS+K A  I    +
Sbjct: 88  VKGIGPATASRIVKQFGMETMRIISE-EPERLSEIRGISRKKAMDIAASLN 137


>gi|257876215|ref|ZP_05655868.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC20]
 gi|325567287|ref|ZP_08143954.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           casseliflavus ATCC 12755]
 gi|257810381|gb|EEV39201.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC20]
 gi|325158720|gb|EGC70866.1| crossover junction ATP-dependent DNA helicase RuvA [Enterococcus
           casseliflavus ATCC 12755]
          Length = 196

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 528 YFIQRLRDEAHR---FA-ITTHRKRRKKAAYSPLDEINGIGPLRKRLLL---QSFGTVKM 580
           Y  Q +R++AH    FA I        K  +  L  ++GIGP     ++      G +  
Sbjct: 47  YLHQVIREDAHSLYGFATIEG------KQLFLKLISVSGIGPKSALAIMANEDHTGLITA 100

Query: 581 ISRSSPETLASIEGISKKIACK 602
           +       L    G+ KK A +
Sbjct: 101 VENGDVNYLTKFPGVGKKTAQQ 122


>gi|167769393|ref|ZP_02441446.1| hypothetical protein ANACOL_00723 [Anaerotruncus colihominis DSM
           17241]
 gi|167668361|gb|EDS12491.1| hypothetical protein ANACOL_00723 [Anaerotruncus colihominis DSM
           17241]
          Length = 123

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 556 PLDEINGIGPLRKRLL---LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L ++ GIGP R + +   +  FG +      +PE L  IEGI ++    +    
Sbjct: 71  ELTQLPGIGPARAKAIREYISRFGRIH-----TPEQLLEIEGIGEQTLKNLRPFL 120



 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHF 607
            I+ +S E L  + GI    A  I  + 
Sbjct: 63  RINSASEEELTQLPGIGPARAKAIREYI 90


>gi|194468430|ref|ZP_03074416.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Lactobacillus reuteri 100-23]
 gi|194453283|gb|EDX42181.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Lactobacillus reuteri 100-23]
          Length = 210

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L +I GIG  +  L+LQ       F +V        + L  I G  +K   K+ +
Sbjct: 155 ATKEQLCQITGIGDKKADLILQYRQEHGQFKSV--------DELKEINGFGEKTVAKLKD 206

Query: 606 HF 607
           + 
Sbjct: 207 YL 208


>gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
 gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
          Length = 857

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           D I G   IGP     LLQ  G++  + +++       +G  +KIA  + +  
Sbjct: 187 DNIPGAKGIGPKTAAKLLQEHGSLDAVLQAAEAGALKPKGTQEKIAASVQDVL 239


>gi|270312615|gb|ACZ73402.1| homing endonuclease [Mortierella hyalina]
          Length = 257

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 11  GVYQM--LDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITH 50
           G+Y    LD   +  YVG + NL  RI SY  S+    +   
Sbjct: 76  GIYIWESLDGHNK--YVGHSINLYNRISSYFMSSILKTKARK 115


>gi|206600168|ref|YP_002241673.1| gp89 [Mycobacterium phage Pacc40]
 gi|206287256|gb|ACI12600.1| gp89 [Mycobacterium phage Pacc40]
          Length = 175

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 21/81 (25%)

Query: 13 YQMLDIAGRVLYVGKAYNLQKRIKSY------MHSNNHTHRITHMISQINNIRFTVTCTE 66
          Y+  +    +LY+G   N + R   +        S   +            ++   T  E
Sbjct: 9  YRFYNAEDDLLYIGITNNPRSRFNQHHADKAWFKSVARST-----------MQHFATRAE 57

Query: 67 VE-ALLLEANMIKRLKPRFNI 86
          +E A   E   I+   PR+N+
Sbjct: 58 LETA---EVAAIQSEMPRYNV 75


>gi|187933370|ref|YP_001884766.1| DNA repair protein RadC [Clostridium botulinum B str. Eklund 17B]
 gi|238691627|sp|B2TK55|Y562_CLOBB RecName: Full=UPF0758 protein CLL_A0562
 gi|187721523|gb|ACD22744.1| DNA repair protein RadC [Clostridium botulinum B str. Eklund 17B]
          Length = 229

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL  F  +  +  +S + + SI+GI +  A +I  
Sbjct: 53  RLLSKFQGLDGVLEASLDDITSIKGIKEGKASQILA 88


>gi|163796509|ref|ZP_02190468.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
 gi|159178069|gb|EDP62614.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
          Length = 198

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           I GIGP+  R ++++FG  V  I  + P+ L  + GI +  A +I + 
Sbjct: 55  IRGIGPVYARKMVKAFGEKVFDIIEAEPDRLREVTGIGRVRAKRITDA 102


>gi|163796786|ref|ZP_02190744.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
 gi|159178040|gb|EDP62587.1| Helicase RecD/TraA [alpha proteobacterium BAL199]
          Length = 721

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           I GIGP+  R ++++FG  V  I  + P+ L  + GI +  A +I + 
Sbjct: 88  IRGIGPVYARKMVKAFGEKVFDIIEAEPDRLREVTGIGRVRAKRITDA 135


>gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7]
 gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I
 gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7]
          Length = 875

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++S++
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQVSSVK 223


>gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
          Length = 831

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 9/52 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            + GIG      L++++G+V+ +  +  + L     + +K+A       H+N
Sbjct: 191 GVPGIGEKTALDLIKTYGSVEEVL-AHKDELK--PKLREKLAE------HEN 233


>gi|326329831|ref|ZP_08196151.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium
           Broad-1]
 gi|325952417|gb|EGD44437.1| holliday junction DNA helicase RuvA [Nocardioidaceae bacterium
           Broad-1]
          Length = 200

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACKIYNH 606
           +  +  L   +G+GP   + +L    +   I  + S E    L  + GI +K A ++   
Sbjct: 68  RTLFELLQTASGVGPKLAQAMLAVL-SPDGIRLAISTEDAKTLTKVPGIGQKGAQRVILE 126

Query: 607 FHKNTSHTPT 616
             K+    PT
Sbjct: 127 L-KDRIGAPT 135


>gi|311900125|dbj|BAJ32533.1| putative 5'-3' exonuclease [Kitasatospora setae KM-6054]
          Length = 333

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
           L  + GIG      L++ +G +  I  ++ + L+ +
Sbjct: 224 LPGVKGIGEKTATQLIREYGDLAGIRTAAADPLSKL 259


>gi|312623552|ref|YP_004025165.1| helicase, recd/traa family [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312204019|gb|ADQ47346.1| helicase, RecD/TraA family [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 741

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I GIG    + ++ +FG     I +  PE L SI G++ +   +I N F
Sbjct: 89  IKGIGQKTAKKIVDTFGDDTARILQQEPEKLLSIRGMTPEKVERIKNMF 137


>gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium]
          Length = 647

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            + G+G      LL  +GT+  I       L +++ I  K+   + +
Sbjct: 187 GVPGVGAKTAAKLLNEYGTIAGI-------LENVDNIKGKVGQSLKD 226


>gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis]
          Length = 875

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++S++
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQVSSVK 223


>gi|166032766|ref|ZP_02235595.1| hypothetical protein DORFOR_02481 [Dorea formicigenerans ATCC
           27755]
 gi|166027123|gb|EDR45880.1| hypothetical protein DORFOR_02481 [Dorea formicigenerans ATCC
           27755]
          Length = 287

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 14/63 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  +NGIG +R + +L+       F ++        E L  +EGI K    K+ +
Sbjct: 232 ASKEELLTLNGIGDVRAQAILKYREEHGEFRSI--------EELMEVEGIKKGTFQKLKD 283

Query: 606 HFH 608
              
Sbjct: 284 QIK 286


>gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
 gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
 gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
          Length = 875

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++S++
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQVSSVK 223


>gi|325133819|gb|EGC56475.1| DNA ligase, NAD-dependent [Neisseria meningitidis M13399]
          Length = 841

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|313623350|gb|EFR93577.1| DNA ligase, NAD-dependent [Listeria innocua FSL J1-023]
          Length = 671

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    + L   F T+  +  +  ETL SI  I +K+A     +F    
Sbjct: 508 GIRHVGAKAAKSLAVHFETMDNLKIADKETLTSINDIGEKMADSXXTYFANEE 560


>gi|312278876|gb|ADQ63533.1| DNA uptake protein DNA-binding-like protein [Streptococcus
           thermophilus ND03]
          Length = 231

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L  I+GIG  R   ++      G  +     S + L ++ GI  K   KI    
Sbjct: 175 ATSEQLQTISGIGAKRTEDIIAYRESHGGFQ-----SVDDLKNVSGIGDKTLDKIRESL 228


>gi|307354072|ref|YP_003895123.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
 gi|307157305|gb|ADN36685.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571]
          Length = 932

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 547 KRRKKAAYS---PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIAC 601
           K  KK   S    L  I G+G      L  + G  + K +  + PE ++ + GI      
Sbjct: 867 KVSKKELESGRIELLSIEGLGEAMLEKLYMA-GIVSRKKLCSADPEQISKLTGIPS---E 922

Query: 602 KIYNHFHKN 610
           KI  +F + 
Sbjct: 923 KI-TYFQEE 930


>gi|291618647|ref|YP_003521389.1| Xni [Pantoea ananatis LMG 20103]
 gi|291153677|gb|ADD78261.1| Xni [Pantoea ananatis LMG 20103]
 gi|327395027|dbj|BAK12449.1| exodeoxyribonuclease IX Xni [Pantoea ananatis AJ13355]
          Length = 252

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           S +  I GIGP   R LLQ FG+++ + +     L  + 
Sbjct: 177 SKIPGIAGIGPKSARELLQQFGSLESLYQ----QLDQVP 211


>gi|284053772|ref|ZP_06383982.1| NAD-dependent DNA ligase LigA [Arthrospira platensis str. Paraca]
          Length = 683

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G     LL Q+F + + ++ +S   +  + GI  +IA  +Y  F    +
Sbjct: 523 GIRHVGKANADLLAQNFPSCQSLAAASSAQIEGVYGIGAEIATSVYQWFQNPAN 576


>gi|261392961|emb|CAX50546.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
           meningitidis 8013]
          Length = 841

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|254804544|ref|YP_003082765.1| DNA ligase [Neisseria meningitidis alpha14]
 gi|254668086|emb|CBA04596.1| DNA ligase [Neisseria meningitidis alpha14]
          Length = 841

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ + R+    LA +  I   +A  I + F +     
Sbjct: 606 GIRHVGERTAKTLAQAFGTLEHVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQA 661


>gi|251788531|ref|YP_003003252.1| DNA polymerase IV [Dickeya zeae Ech1591]
 gi|247537152|gb|ACT05773.1| DNA-directed DNA polymerase [Dickeya zeae Ech1591]
          Length = 352

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL++I G+G +  R                    LL++FG    +           + SP
Sbjct: 177 PLEKIPGVGSVTARRLAESGLHTCADVRRYALSELLRAFGKFGRVLWERCHGIDERQVSP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  IY+ 
Sbjct: 237 DRLRKSVGVEKTLAQDIYDW 256


>gi|171920530|ref|ZP_02695360.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|171903225|gb|EDT49514.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
          Length = 673

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 26/52 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   + L + F T+  +  ++ + L +++   +K A  + N F+ +
Sbjct: 515 GIRHVGPNLAKKLAKQFKTMTTLMHANFDELTNVDACGEKAALSLINWFNDD 566


>gi|320529157|ref|ZP_08030249.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399]
 gi|320138787|gb|EFW30677.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399]
          Length = 672

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYNHFHKNTS 612
            I GIG      L+Q F +V  ++ +     E + ++  + +  A  +   F    S
Sbjct: 517 GIAGIGRAAAISLMQEFPSVDALAEAARGDAEKILAVPDMGEVSARSLAEFFGSEAS 573


>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
          Length = 830

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L  + GIG      LL+ +G+++ I     + L  ++   +++   I N+  K
Sbjct: 190 LPGVPGIGEKTALKLLKEWGSLEAI----LKNLDQVK--PERVREAIRNNLDK 236


>gi|209364102|ref|YP_001424875.2| COME operon protein 1 [Coxiella burnetii Dugway 5J108-111]
 gi|212212970|ref|YP_002303906.1| COME operon protein 1 [Coxiella burnetii CbuG_Q212]
 gi|212218843|ref|YP_002305630.1| COME operon protein 1 [Coxiella burnetii CbuK_Q154]
 gi|215918990|ref|NP_819564.2| competence protein ComEA, helix-hairpin-helix repeat region
           [Coxiella burnetii RSA 493]
 gi|206583875|gb|AAO90078.2| COME operon protein 1 [Coxiella burnetii RSA 493]
 gi|207082035|gb|ABS77203.2| COME operon protein 1 [Coxiella burnetii Dugway 5J108-111]
 gi|212011380|gb|ACJ18761.1| COME operon protein 1 [Coxiella burnetii CbuG_Q212]
 gi|212013105|gb|ACJ20485.1| COME operon protein 1 [Coxiella burnetii CbuK_Q154]
          Length = 123

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 15/60 (25%)

Query: 557 LDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK-IACKIYNHFHK 609
           L  + GIG  + + ++        F +++         L+S+ GIS+K +A  I N+ H+
Sbjct: 67  LTTLKGIGVKKAKAIIAYRKKEGNFKSIEA--------LSSVPGISQKTVARLIRNNPHR 118


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA----------SIEG-ISKKIACKIYNH 606
            I G+G    + L+  +G+++ +   + E L             +G +SK +A  I + 
Sbjct: 218 GIPGVGEKTAKKLIADYGSMEGVFE-NVEDLKGKMKENVINFKEQGLMSKLLATIILDA 275


>gi|291562481|emb|CBL41297.1| Predicted EndoIII-related endonuclease [butyrate-producing
           bacterium SS3/4]
          Length = 217

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 10/55 (18%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIE---GISKKIACKI-------YNHFHKNTSH 613
           + L + F  VK ++ +  + +  I    G+ +  A  I       Y  +H N   
Sbjct: 58  QDLYKKFPDVKALAEADVDEIEEIVRPCGLGRSKARDISACMKILYEQYHGNVPD 112


>gi|218247652|ref|YP_002373023.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 8801]
 gi|218168130|gb|ACK66867.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 8801]
          Length = 545

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR--SSPETLASIEGISKKIACKI 603
           A  + L+ + GIG    + +++     +   +  +S + L  + GI +    ++
Sbjct: 491 ATQAELESLPGIGEKTAQKIIE-----ERQKKPFTSLDDLTRVSGIGEAKIKRL 539


>gi|158421773|ref|YP_001523065.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
 gi|190359227|sp|A8IGY0|DNLJ_AZOC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158328662|dbj|BAF86147.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
          Length = 739

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 29/80 (36%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMIS-------------RSSPE----------------TL 589
            I  +G    + L + +G+V+ +               +S E                 +
Sbjct: 560 GIRHVGETNAKRLARHYGSVEALRDAAIGAEMPTEMEEASEETPPTRRRKPQGNEVWQEM 619

Query: 590 ASIEGISKKIACKIYNHFHK 609
             I+GI   +A  +   F +
Sbjct: 620 TDIDGIGAVVAEAVVEFFRE 639


>gi|326381587|ref|ZP_08203281.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326199834|gb|EGD57014.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 319

 Score = 40.1 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 15/57 (26%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISK-KIAC 601
           A    LD + G+GP+    ++        F        +S + LA ++GI   ++A 
Sbjct: 263 ATADQLDALPGVGPVTASAIISWRESHGRF--------ASVDQLAEVDGIGPGRLAK 311


>gi|312382589|gb|EFR27996.1| hypothetical protein AND_04684 [Anopheles darlingi]
          Length = 245

 Score = 40.1 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            L  I  +      +LLQ++GT+  +  S+ E L+ + G+  +   K+Y  F++N
Sbjct: 188 ALTSIKPVNQTDAMILLQNYGTLANLINSTEEKLSMVSGLGPRKVKKLYKTFNEN 242


>gi|302802031|ref|XP_002982771.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
 gi|300149361|gb|EFJ16016.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
          Length = 363

 Score = 40.1 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            I GIG      L+  FG+V+ + +
Sbjct: 247 GIPGIGEKTAIELITKFGSVENLLK 271


>gi|284504064|ref|YP_003406779.1| hypothetical protein MAR_ORF024 [Marseillevirus]
 gi|282935502|gb|ADB03817.1| hypothetical protein MAR_ORF024 [Marseillevirus]
          Length = 593

 Score = 40.1 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 12  VYQMLDIAGRV-LY-VGKAYNLQKRIKSYMHSNN 43
           VY + DI+    +Y VGKA NL +R+ SY   ++
Sbjct: 168 VYILRDISKNPGIYKVGKAKNLSQRLSSYSTGSS 201


>gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5]
 gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5]
          Length = 875

 Score = 40.1 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++S++
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQVSSVK 223


>gi|227544210|ref|ZP_03974259.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri CF48-3A]
 gi|300908206|ref|ZP_07125672.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri SD2112]
 gi|133930481|gb|ABO43812.1| RuvA [Lactobacillus reuteri]
 gi|227185803|gb|EEI65874.1| crossover junction endoribonuclease subunit A [Lactobacillus
           reuteri CF48-3A]
 gi|300894633|gb|EFK87989.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           reuteri SD2112]
          Length = 199

 Score = 40.1 bits (92), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     +L      G V  I+ ++   L    GI KK A +I
Sbjct: 68  KKLFMQLINVSGIGPKSALAILANPDHQGLVDAITNNNVNYLTKFPGIGKKTASQI 123


>gi|303232207|ref|ZP_07318910.1| helicase, RecD/TraA family [Veillonella atypica ACS-049-V-Sch6]
 gi|302513313|gb|EFL55352.1| helicase, RecD/TraA family [Veillonella atypica ACS-049-V-Sch6]
          Length = 717

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 559 EINGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G      +   FG   + ++    PE +  + G+ K +  ++YN  
Sbjct: 88  GIKGLGEKSVEKICDYFGLRLLDVLREERPEEIKDVPGLRKGVKEELYNTL 138


>gi|302039123|ref|YP_003799445.1| putative DNA-directed DNA polymerase [Candidatus Nitrospira
           defluvii]
 gi|300607187|emb|CBK43520.1| putative DNA-directed DNA polymerase, family X, modulated with
           phosphoesterase domain [Candidatus Nitrospira defluvii]
          Length = 576

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISK 597
           AI   RK R  A  + L  I G+GP R + L Q     +   + +++ E  + ++ G  +
Sbjct: 81  AIEAQRK-RVPATVTELLRIPGLGPKRVKTLTQELKIRSPSELQKAAQEGRVRTLAGFGE 139

Query: 598 KIACKI 603
           K    I
Sbjct: 140 KTEQHI 145


>gi|294340625|emb|CAZ89015.1| transposase of an IS110 family member [Thiomonas sp. 3As]
          Length = 337

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 542 ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
           I  H K R+ A  S +  I G+G      +L   G V     +  + LA+  G++ KI  
Sbjct: 191 IDRHPKLREDA--SLITSIPGLGNTTAAKVLAYLGDVNRFKNA--KALAAFVGVTPKIKE 246


>gi|227534464|ref|ZP_03964513.1| crossover junction endoribonuclease subunit A [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187863|gb|EEI67930.1| crossover junction endoribonuclease subunit A [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 212

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           K  ++ L  + GIGP     +L +  +      I++   + L    GI KK A +I
Sbjct: 80  KRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQI 135


>gi|225848972|ref|YP_002729136.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643758|gb|ACN98808.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 298

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            I G+GP     LLQ FG++  I  
Sbjct: 188 GIKGVGPKTAASLLQEFGSIDRILE 212


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
          Length = 954

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + L+  FG+++ +  ++ + L 
Sbjct: 221 DNIPGCPGVGEKTAQKLIAQFGSIENLL-ANTDQLK 255


>gi|148643393|ref|YP_001273906.1| DNA repair and recombination protein RadA [Methanobrevibacter
           smithii ATCC 35061]
 gi|222445636|ref|ZP_03608151.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii
           DSM 2375]
 gi|166218764|sp|A5UMW0|RADA_METS3 RecName: Full=DNA repair and recombination protein radA
 gi|148552410|gb|ABQ87538.1| DNA repair protein RadA, RadA [Methanobrevibacter smithii ATCC
           35061]
 gi|222435201|gb|EEE42366.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii
           DSM 2375]
          Length = 311

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            L+++  +G      L  + F  +  ++ ++P+ L+    I + +A K+     K+ 
Sbjct: 3   ELEDLPSVGEKTAEKLRDAGFADMMRLATATPKELSVKAEIGEGVAEKVIEAARKSE 59


>gi|28210082|ref|NP_781026.1| exodeoxyribonuclease V alpha chain [Clostridium tetani E88]
 gi|28202518|gb|AAO34963.1| exodeoxyribonuclease V alpha chain [Clostridium tetani E88]
          Length = 743

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           I+GIGP+  + +++ FG  T   I  +  E L  I+GI  K    I   + 
Sbjct: 89  ISGIGPVTAKKIVKEFGLETFD-ILENDIERLKEIDGIGDKKINIIQEAYK 138


>gi|127513684|ref|YP_001094881.1| exonuclease IX [Shewanella loihica PV-4]
 gi|156630384|sp|A3QGM4|XNI_SHELP RecName: Full=Protein Xni
 gi|126638979|gb|ABO24622.1| 5'-3' exonuclease [Shewanella loihica PV-4]
          Length = 256

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            I GIGP     LL++F T+  +  +S +       I  K A K+
Sbjct: 182 GIPGIGPKSACELLKTFRTLANVY-ASLD------KIGAKQAKKL 219


>gi|116494312|ref|YP_806046.1| Holliday junction DNA helicase RuvA [Lactobacillus casei ATCC 334]
 gi|191637648|ref|YP_001986814.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BL23]
 gi|239629698|ref|ZP_04672729.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301065824|ref|YP_003787847.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           casei str. Zhang]
 gi|122264259|sp|Q03B18|RUVA_LACC3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560092|sp|B3WC55|RUVA_LACCB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116104462|gb|ABJ69604.1| Holliday junction DNA helicase subunit RuvA [Lactobacillus casei
           ATCC 334]
 gi|190711950|emb|CAQ65956.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           casei BL23]
 gi|239528384|gb|EEQ67385.1| holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438231|gb|ADK17997.1| Holliday junction resolvasome, DNA-binding subunit [Lactobacillus
           casei str. Zhang]
 gi|327381703|gb|AEA53179.1| Holliday junction DNA helicase RuvA [Lactobacillus casei LC2W]
 gi|327384869|gb|AEA56343.1| Holliday junction DNA helicase RuvA [Lactobacillus casei BD-II]
          Length = 198

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           K  ++ L  + GIGP     +L +  +      I++   + L    GI KK A +I
Sbjct: 66  KRTFNQLLTVTGIGPKSALAILANVSSGGLATAIAQDDVKFLTKFPGIGKKTAAQI 121


>gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
 gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii]
 gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
          Length = 875

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++S++
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQVSSVK 223


>gi|332970717|gb|EGK09697.1| DNA integrity scanning protein [Desmospora sp. 8437]
          Length = 357

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            + L++ F ++  +  ++ E L  +EGI    A  I     +
Sbjct: 305 IQNLVEGFESLPRVMMATIEELDEVEGIGDVRARTIKEGLKR 346


>gi|329120866|ref|ZP_08249524.1| DNA topoisomerase TopA [Neisseria bacilliformis ATCC BAA-1200]
 gi|327459653|gb|EGF05996.1| DNA topoisomerase TopA [Neisseria bacilliformis ATCC BAA-1200]
          Length = 108

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I+ ++ E L ++ GI +  A  I ++  +N
Sbjct: 24  NINTATAEELKALPGIGQAKAQAIVDYRKEN 54


>gi|325290232|ref|YP_004266413.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965633|gb|ADY56412.1| Holliday junction ATP-dependent DNA helicase ruvA [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 200

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           R+ K  +  L  ++GIGP     +L SF +V+ I  +  +        I GI  KIA ++
Sbjct: 65  RQDKELFIKLLSVSGIGPKAALSILSSFSSVQ-IITALVQENHVMFTEISGIGSKIARRL 123


>gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2]
 gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2]
          Length = 884

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            I G+G      LL  +G+V+ +  +  + L 
Sbjct: 191 GIPGVGEKTALKLLHQYGSVEEVL-AHTDELK 221


>gi|303229677|ref|ZP_07316465.1| helicase, RecD/TraA family [Veillonella atypica ACS-134-V-Col7a]
 gi|302515802|gb|EFL57756.1| helicase, RecD/TraA family [Veillonella atypica ACS-134-V-Col7a]
          Length = 717

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 559 EINGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G+G      +   FG   + ++    PE +  + G+ K +  ++YN  
Sbjct: 88  GIKGLGEKSVEKICDYFGLRLLDVLREERPEEIKDVPGLRKGVKEELYNTL 138


>gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 896

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 7/40 (17%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           D I G+   G      LL+ FG++  I  + PE    + G
Sbjct: 191 DNIPGLTGFGEKTAAALLRQFGSLDYIL-AHPEE---VPG 226


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            + G+GP     L+  FG+++ +  ++ E +++ + + +K+A
Sbjct: 190 GVPGVGPKTAAKLIDQFGSLEQLF-ANLEQVSAAK-LREKLA 229


>gi|148270365|ref|YP_001244825.1| DNA repair protein RadC [Thermotoga petrophila RKU-1]
 gi|281412671|ref|YP_003346750.1| DNA repair protein RadC [Thermotoga naphthophila RKU-10]
 gi|166218798|sp|A5IM26|Y1235_THEP1 RecName: Full=UPF0758 protein Tpet_1235
 gi|147735909|gb|ABQ47249.1| DNA repair protein RadC [Thermotoga petrophila RKU-1]
 gi|281373774|gb|ADA67336.1| DNA repair protein RadC [Thermotoga naphthophila RKU-10]
          Length = 222

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL+ F G++  +S +  E +AS+EG+    A  +    
Sbjct: 46  KDLLERFDGSLIKLSNAGLEEIASVEGVGMVKAITLKAAL 85


>gi|91775275|ref|YP_545031.1| competence protein ComEA helix-hairpin-helix region
           [Methylobacillus flagellatus KT]
 gi|91775419|ref|YP_545175.1| competence protein ComEA helix-hairpin-helix region
           [Methylobacillus flagellatus KT]
 gi|91709262|gb|ABE49190.1| Competence protein ComEA helix-hairpin-helix region
           [Methylobacillus flagellatus KT]
 gi|91709406|gb|ABE49334.1| Competence protein ComEA helix-hairpin-helix region
           [Methylobacillus flagellatus KT]
          Length = 99

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 556 PLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKK 598
            L+ + GIGP + + ++      G+ K     S + L +++G  KK
Sbjct: 31  ELESVKGIGPAKAQAIIDYRKANGSFK-----SVDDLDNVKGFGKK 71


>gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 931

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 14/60 (23%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D I G   IGP R   LL+ +G++  I     + L  I+G       K+  +  +     
Sbjct: 196 DNIPGVKGIGPKRAVELLERYGSLDEI----FDHLDEIQG-------KVQQYLKEGIPAA 244


>gi|332981923|ref|YP_004463364.1| PHP domain-containing protein [Mahella australiensis 50-1 BON]
 gi|332699601|gb|AEE96542.1| PHP domain protein [Mahella australiensis 50-1 BON]
          Length = 574

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYN 605
           +I G+GP R + L +  G  T+  +  +  E  L  +EG  +K+   I  
Sbjct: 95  KIPGLGPKRIQTLYKKLGITTIGELEYACIENRLLELEGFGRKMQENILK 144


>gi|330686124|gb|EGG97745.1| comEA protein [Staphylococcus epidermidis VCU121]
          Length = 223

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L ++ GIGP + + +++ F   K     S + L +I+G   K   K+  +F
Sbjct: 168 ATEEQLMKVPGIGPSKAKEIIE-FKNQKGSFN-SIDDLKNIKGFGPKTFEKLKEYF 221



 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++ ++ E L  + GI    A +I   
Sbjct: 164 NLNSATEEQLMKVPGIGPSKAKEIIEF 190


>gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
          Length = 857

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      L+Q FG V  +       L+ ++G+  K+  K+  +
Sbjct: 192 GVPGVGEKTALKLIQEFGGVDGVYA----RLSEVKGV--KLREKLQQY 233


>gi|289677233|ref|ZP_06498123.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae FF5]
          Length = 49

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 381 RIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMM 431
           R+E YD SH  G + V   VV G  G +K+ YR+FN+    V   DD A M
Sbjct: 1   RLECYDISHSSGEATVASCVVFGPEGPIKSDYRRFNIEG--VTAGDDYAAM 49


>gi|288559373|ref|YP_003422859.1| DNA repair and recombination protein RadA [Methanobrevibacter
           ruminantium M1]
 gi|288542083|gb|ADC45967.1| DNA repair and recombination protein RadA [Methanobrevibacter
           ruminantium M1]
          Length = 311

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            L+++  +G      L ++ F  +  ++ ++ + L+    I + +A K+     K  
Sbjct: 3   ELEDLPNVGEKTAEKLREAGFADMMRLATATAKELSVKAEIGEGVAEKVIEAARKAE 59


>gi|225075650|ref|ZP_03718849.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
           NRL30031/H210]
 gi|224953072|gb|EEG34281.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
           NRL30031/H210]
          Length = 822

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ +  +    LA +  I   +A  I + F +     
Sbjct: 587 GIRHVGERTAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVARSIAHFFAQEAQQA 642


>gi|78357485|ref|YP_388934.1| DNA repair protein RadC [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219890|gb|ABB39239.1| DNA repair protein RadC [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 225

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 544 THRKR-RKKAAYS--------PLDEINGIGPLRK------RLLLQSFGTVKMISRSSPET 588
            HR+R R+K             L+ I G+   R+      + LL  FG+++ +  + P+ 
Sbjct: 9   GHRQRLREKLKKDSTQLADYEILELILGMVLRRQDTKPLAKRLLGRFGSLRGVLDARPQE 68

Query: 589 LASIEGISKKI 599
           L + +G+   +
Sbjct: 69  LMAEKGVGPAM 79


>gi|308174501|ref|YP_003921206.1| DNA repair protein [Bacillus amyloliquefaciens DSM 7]
 gi|307607365|emb|CBI43736.1| putative DNA repair protein [Bacillus amyloliquefaciens DSM 7]
 gi|328554420|gb|AEB24912.1| hypothetical protein BAMTA208_13755 [Bacillus amyloliquefaciens
           TA208]
 gi|328912824|gb|AEB64420.1| putative DNA repair protein [Bacillus amyloliquefaciens LL3]
          Length = 231

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LL++F  ++++  +S + L+SI GI    A +I    
Sbjct: 56  RLLRTFDGLRLLKGASAQELSSIPGIGTVKAVQILAAI 93


>gi|154686939|ref|YP_001422100.1| DNA repair protein RadC [Bacillus amyloliquefaciens FZB42]
 gi|166218774|sp|A7Z793|Y2509_BACA2 RecName: Full=UPF0758 protein RBAM_025090
 gi|154352790|gb|ABS74869.1| RadC [Bacillus amyloliquefaciens FZB42]
          Length = 231

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LL++F  ++++  +S + L+SI GI    A +I    
Sbjct: 56  RLLRTFDGLRLLKGASAQELSSIPGIGTVKAVQILAAI 93


>gi|324328357|gb|ADY23617.1| hypothetical protein YBT020_21945 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGVAKASQLIAAF 87


>gi|313902840|ref|ZP_07836237.1| DNA integrity scanning, DisA, linker region [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466960|gb|EFR62477.1| DNA integrity scanning, DisA, linker region [Thermaerobacter
           subterraneus DSM 13965]
          Length = 355

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 18/47 (38%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
              L++ F  +  I  ++ + L  +EGI    A  I +   +     
Sbjct: 303 IENLVRHFQRLPRILAATVDQLDEVEGIGGIRARAIKDGLRRLQDQA 349


>gi|288869613|ref|ZP_05975231.2| DNA repair and recombination protein RadA [Methanobrevibacter
           smithii DSM 2374]
 gi|288860598|gb|EFC92896.1| DNA repair and recombination protein RadA [Methanobrevibacter
           smithii DSM 2374]
          Length = 314

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            L+++  +G      L  + F  +  ++ ++P+ L+    I + +A K+     K+ 
Sbjct: 6   ELEDLPSVGEKTAEKLRDAGFADMMRLATATPKELSVKAEIGEGVAEKVIEAARKSE 62


>gi|167748267|ref|ZP_02420394.1| hypothetical protein ANACAC_03011 [Anaerostipes caccae DSM 14662]
 gi|317472189|ref|ZP_07931518.1| RecD/TraA family helicase [Anaerostipes sp. 3_2_56FAA]
 gi|167652259|gb|EDR96388.1| hypothetical protein ANACAC_03011 [Anaerostipes caccae DSM 14662]
 gi|316900278|gb|EFV22263.1| RecD/TraA family helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 740

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I G+GP   + +++ F   T ++I    PE LA ++G+++K A  I
Sbjct: 88  IKGVGPAIAKRIVKKFKMDTFRIIEE-EPERLAEVKGVTEKRARSI 132


>gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5]
 gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5]
          Length = 875

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++S++
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQVSSVK 223


>gi|149912310|ref|ZP_01900877.1| NAD-dependent DNA ligase [Moritella sp. PE36]
 gi|149804613|gb|EDM64677.1| NAD-dependent DNA ligase [Moritella sp. PE36]
          Length = 171

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            K  YS    I  +G      L     T+  I ++S E L  I  +   +A  IY  F +
Sbjct: 9   AKFLYS--LGIREVGEATAANLANDLLTLDAIKKASVERLILISDVGDIVAKHIYYFFRE 66


>gi|126661189|ref|ZP_01732265.1| Helicase RecD/TraA [Cyanothece sp. CCY0110]
 gi|126617525|gb|EAZ88318.1| Helicase RecD/TraA [Cyanothece sp. CCY0110]
          Length = 745

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPETLASIEGISKKIACKIYN 605
           K   S L  I G+GP+  + ++  F   T+++I     E L  + GI KK    I +
Sbjct: 96  KYLGSGL--IRGVGPVTAKRIVAYFQLDTLEIIEN-QIERLVEVPGIGKKRVKMIQD 149


>gi|332666158|ref|YP_004448946.1| DNA protecting protein DprA [Haliscomenobacter hydrossis DSM 1100]
 gi|332334972|gb|AEE52073.1| DNA protecting protein DprA [Haliscomenobacter hydrossis DSM 1100]
          Length = 364

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
            L +I  +GP+  R L+   G+ + +  SS ++L  I GI  ++  +I 
Sbjct: 9   ALTKIPKVGPVTARTLVSYCGSPQEVFLSSTKSLLKIPGIGGQLTQQIK 57


>gi|295099824|emb|CBK88913.1| Holliday junction DNA helicase subunit RuvA [Eubacterium
           cylindroides T2-87]
          Length = 193

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSF-GT--VKMISRSSPETLASIEGISKKIACKI 603
            L  + GIGP   + +L    G+  ++ I     + L S+ GI  K A +I
Sbjct: 71  RLINVKGIGPKTAQTMLAVCPGSKMIQAIEEDDVKLLKSLPGIGAKTASQI 121


>gi|291165807|gb|EFE27855.1| holliday junction DNA helicase RuvA [Filifactor alocis ATCC 35896]
          Length = 198

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISR----SSPETLASIEGISKKIACKI 603
           + +K  +  L  ++ IGP     +L ++  V  I      ++ E L+ + G+ KK A +I
Sbjct: 65  KSEKELFEQLTSVSKIGPKVGLSILSTYQ-VDQIKSYIVTANIEKLSKVSGVGKKTAERI 123

Query: 604 YNHFHKNTSH 613
                   SH
Sbjct: 124 VLELKDKISH 133


>gi|257061013|ref|YP_003138901.1| hypothetical protein Cyan8802_3228 [Cyanothece sp. PCC 8802]
 gi|256591179|gb|ACV02066.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 8802]
          Length = 545

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR--SSPETLASIEGISKKIACKI 603
           A  + L+ + GIG    + +++     +   +  +S + L  + GI +    ++
Sbjct: 491 ATQAELESLPGIGEKTAQKIIE-----ERQKKPFTSLDDLTRVSGIGEAKIKRL 539


>gi|171057039|ref|YP_001789388.1| DNA protecting protein DprA [Leptothrix cholodnii SP-6]
 gi|170774484|gb|ACB32623.1| DNA protecting protein DprA [Leptothrix cholodnii SP-6]
          Length = 379

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L E  G+G    R LL +FG+ + +  +S    A +  I K  A K+
Sbjct: 11  QLLETPGVGRQSARRLLAAFGSPQAVLSASVSARAGV--IDKATAAKL 56


>gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414]
 gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414]
          Length = 970

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IG      LL  +G++  I  +    + 
Sbjct: 210 DNIPGVRGIGEKTAVQLLTKYGSLAEIYAA-INEIK 244


>gi|12408618|ref|NP_074951.1| orf305 [Podospora anserina]
 gi|1334559|emb|CAA38804.1| GIY COII i1 grp IB protein [Podospora anserina]
          Length = 305

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 18/93 (19%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI------NNIRFT 61
              G+Y+  +     +Y+G++ +L KR   Y + +   +R T +IS+       +N +  
Sbjct: 70  NKSGIYKWTNKLTNDIYIGQSVDLSKRFIRYFNMSYLKNRETLIISRALIKYGYSNFQLE 129

Query: 62  VTC-------TEVEALLLEANMIKRLKPRFNIL 87
           V         TE      E   + +L P++NIL
Sbjct: 130 VLEYCDIADLTE-----REQYYLDKLNPKYNIL 157


>gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
          Length = 921

 Score = 40.1 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++S++
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQVSSVK 223


>gi|329890825|ref|ZP_08269168.1| hypothetical protein BDIM_25320 [Brevundimonas diminuta ATCC
          11568]
 gi|328846126|gb|EGF95690.1| hypothetical protein BDIM_25320 [Brevundimonas diminuta ATCC
          11568]
          Length = 242

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 11 GVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTH 46
          GVY   D  G  +YVG+    L+ RI+ ++ +     
Sbjct: 50 GVYAFFDYDGEPIYVGQTNERLRTRIRRHLTNQRTDA 86


>gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2]
 gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2]
          Length = 942

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIEG-ISKKIACKIYNHF 607
            + GIGP +   L+  +G++   I+ +       + G + + +   I +  
Sbjct: 219 GVPGIGPKKASALIMRYGSLDEVIAHA-----EEVPGKMGENLRAHIDDAL 264


>gi|313159668|gb|EFR59025.1| DNA protecting protein DprA [Alistipes sp. HGB5]
          Length = 367

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            GIG      LL  FG+ + I  ++P+ LA   G+ ++IA +I
Sbjct: 12  PGIGVKGAVHLLGVFGSARDIFAAAPDELAGEAGLREEIAREI 54


>gi|13508118|ref|NP_110067.1| 5'-3' exonuclease (complete) [Mycoplasma pneumoniae M129]
 gi|2494184|sp|P75403|EX53_MYCPN RecName: Full=5'-3' exonuclease
 gi|1674147|gb|AAB96106.1| 5'-3' exonuclease [Mycoplasma pneumoniae M129]
 gi|301633305|gb|ADK86859.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma pneumoniae FH]
          Length = 291

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           L  I GIGP +   LL+ +GT+  I  ++ + L+ 
Sbjct: 194 LTGIKGIGPKKGIDLLKQYGTIDNIF-ANFDKLSK 227


>gi|118466068|ref|YP_879847.1| DNA integrity scanning protein DisA [Mycobacterium avium 104]
 gi|254773525|ref|ZP_05215041.1| DNA integrity scanning protein DisA [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|166201838|sp|A0QAA9|DISA_MYCA1 RecName: Full=DNA integrity scanning protein disA
 gi|118167355|gb|ABK68252.1| DNA-binding protein [Mycobacterium avium 104]
          Length = 357

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           L++SFGT++ +  +S   L SI+GI    A  +     +    T T
Sbjct: 308 LVRSFGTLQNVLAASASDLQSIDGIGAMWARHVREGLSQLAESTIT 353


>gi|41406570|ref|NP_959406.1| DNA integrity scanning protein DisA [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81414899|sp|Q743W9|DISA_MYCPA RecName: Full=DNA integrity scanning protein disA
 gi|41394919|gb|AAS02789.1| hypothetical protein MAP_0472c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 357

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
           L++SFGT++ +  +S   L SI+GI    A  +     +    T T
Sbjct: 308 LVRSFGTLQNVLAASASDLQSIDGIGAMWARHVREGLSQLAESTIT 353


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVK 579
            I GIGP     LL  FG++ 
Sbjct: 198 GIPGIGPKTAAQLLNQFGSLD 218


>gi|145219159|ref|YP_001129868.1| helix-hairpin-helix DNA-binding, class 1 [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205323|gb|ABP36366.1| Helix-hairpin-helix DNA-binding, class 1 [Chlorobium
           phaeovibrioides DSM 265]
          Length = 177

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +I GIGP+    L+  F T      ++   L  ++G+  K    +  H 
Sbjct: 124 ELQQIKGIGPVMAERLIA-FRTENGGRITTFNELLKVKGVGLKKLEILKRHL 174


>gi|326436782|gb|EGD82352.1| excision repair cross-complementing rodent repair deficiency
           [Salpingoeca sp. ATCC 50818]
          Length = 548

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           LL +FG+V+ I+ +S + +    G   K   K+ +  
Sbjct: 496 LLSAFGSVRGIATASEDDIRLCPGFGDKKVQKLKSVL 532


>gi|317009536|gb|ADU80116.1| Holliday junction DNA helicase RuvA [Helicobacter pylori India7]
          Length = 183

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|227329181|ref|ZP_03833205.1| DNA polymerase IV [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 352

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL++I G+G +  +                    LL+ FG    +           + SP
Sbjct: 177 PLEKIPGVGKVTAKRLEERGLHTCADVRVYALADLLKEFGKFGRVLWERCQGIDERQISP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  I++ 
Sbjct: 237 DRLRKSVGVEKTLAQDIHDW 256


>gi|261409549|ref|YP_003245790.1| DNA integrity scanning protein DisA [Paenibacillus sp. Y412MC10]
 gi|329929243|ref|ZP_08283002.1| hypothetical protein HMPREF9412_6022 [Paenibacillus sp. HGF5]
 gi|261286012|gb|ACX67983.1| DNA integrity scanning, DisA, linker region [Paenibacillus sp.
           Y412MC10]
 gi|328936802|gb|EGG33241.1| hypothetical protein HMPREF9412_6022 [Paenibacillus sp. HGF5]
          Length = 358

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L++I  +  +  R L+  F  +  I  +S   L  ++GI +  A  I     +
Sbjct: 294 ILNKIPRLPNVIIRNLVDQFHDLSSIMTASIHELDEVDGIGEVRARTIKEGLKR 347


>gi|170744786|ref|YP_001773441.1| DNA repair protein RadC [Methylobacterium sp. 4-46]
 gi|168199060|gb|ACA21007.1| DNA repair protein RadC [Methylobacterium sp. 4-46]
          Length = 247

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           + L+  FG+   +  +  E LA I+GI   +
Sbjct: 71  KALIARFGSFAEVITAPAERLAEIDGIGPAV 101


>gi|116513865|ref|YP_812771.1| metallo-beta-lactamase superfamily hydrolase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116093180|gb|ABJ58333.1| Predicted hydrolase of the metallo-beta-lactamase superfamily
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 614

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 6   MPECP----GVYQ---MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR----ITHMISQ 54
           +P       G Y      +  GR++  GKA NL  R++   ++   T R        +++
Sbjct: 201 LPNASENEVGTYITNVFRNAKGRIIVAGKASNL-NRVQQVFNAAAATGRRVLLTGRDVAK 259

Query: 55  INN 57
           I +
Sbjct: 260 IVH 262


>gi|89899549|ref|YP_522020.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118]
 gi|123091484|sp|Q220R4|RUVA_RHOFD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89344286|gb|ABD68489.1| Holliday junction DNA helicase RuvA [Rhodoferax ferrireducens T118]
          Length = 190

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +AA+  L +I+G+GP     +L   G +V  ++++ + +    L  + GI KK A +
Sbjct: 69  RAAFRELIKISGVGPRTALSVLS--GMSVAELAQAVTLQEGGRLIKVPGIGKKTAER 123


>gi|322368119|ref|ZP_08042688.1| DNA repair and recombination protein RadA [Haladaptatus
           paucihalophilus DX253]
 gi|320552135|gb|EFW93780.1| DNA repair and recombination protein RadA [Haladaptatus
           paucihalophilus DX253]
          Length = 343

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L+ + G+GP     L  + F + + ++ +SP  L++   + +  +  I     K   
Sbjct: 6   LEALPGVGPATAEKLRDAGFDSYQSLAVASPGELSNTADVGESTSADIIQAARKEAD 62


>gi|257866610|ref|ZP_05646263.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC30]
 gi|257872874|ref|ZP_05652527.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC10]
 gi|257800568|gb|EEV29596.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC30]
 gi|257807038|gb|EEV35860.1| holliday junction DNA helicase RuvA [Enterococcus casseliflavus
           EC10]
          Length = 196

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 528 YFIQRLRDEAHR---FA-ITTHRKRRKKAAYSPLDEINGIGPLRKRLLL---QSFGTVKM 580
           Y  Q +R++AH    FA I        K  +  L  ++GIGP     ++      G +  
Sbjct: 47  YLHQVIREDAHSLYGFATIEG------KQLFLKLISVSGIGPKSALAIMANEDHTGLITA 100

Query: 581 ISRSSPETLASIEGISKKIACK 602
           +       L    G+ KK A +
Sbjct: 101 VENGDVNYLTKFPGVGKKTAQQ 122


>gi|262193472|ref|YP_003264681.1| DNA repair protein RadC [Haliangium ochraceum DSM 14365]
 gi|262076819|gb|ACY12788.1| DNA repair protein RadC [Haliangium ochraceum DSM 14365]
          Length = 226

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           LL + G +  ++R++P  L  + GI    A ++   FH
Sbjct: 51  LLHALGGLPQLARAAPSELLEVPGIGAARASRVAATFH 88


>gi|226940162|ref|YP_002795235.1| competence protein ComEA helix-hairpin-helix region [Laribacter
           hongkongensis HLHK9]
 gi|226715088|gb|ACO74226.1| competence protein ComEA helix-hairpin-helix region [Laribacter
           hongkongensis HLHK9]
          Length = 99

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L+++ G+GP++ + ++        F T+        + L  +EG  +K   K+  
Sbjct: 26  ATQAQLEDVKGLGPVKAKAIIDYRQKNGPFKTL--------DDLDKVEGFGRKSIDKLRA 77

Query: 606 HF 607
             
Sbjct: 78  EL 79


>gi|154502207|ref|ZP_02039267.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149]
 gi|153797086|gb|EDN79506.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149]
          Length = 663

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPE--TLASIEGISKKIACKIYNHF 607
            + GIG  + + L+++FGT      +S        ++G    +   I++ F
Sbjct: 509 SVPGIGTSQSKELVKAFGTWDKFRDASVGYYDFTQLDGFGDVLNNNIHSWF 559


>gi|109127649|ref|XP_001107209.1| PREDICTED: DNA repair endonuclease XPF isoform 3 [Macaca mulatta]
          Length = 916

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 852 LLKMPGVNAKNCRSLMHHVKNIAELATLSQDKLTSILG-NAANAKQLYDFIHTSYAE 907


>gi|28189060|dbj|BAC56212.1| putative DNA repair protein [Streptococcus suis]
          Length = 215

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL    ++  +   S E L S+ GI +  A +I  
Sbjct: 50  KLLNRLESLAALRELSIEELQSLTGIGRVKAIEIKA 85


>gi|152976871|ref|YP_001376388.1| DNA repair protein RadC [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025623|gb|ABS23393.1| DNA repair protein RadC [Bacillus cytotoxicus NVH 391-98]
          Length = 185

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L+ F  ++M+  ++ E + SI G+    A ++   F
Sbjct: 50  KILRHFDGLRMLRDATMEEITSIHGVGVAKASQLIAAF 87


>gi|328851214|gb|EGG00371.1| hypothetical protein MELLADRAFT_39770 [Melampsora larici-populina
           98AG31]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
              S L  +NG+       L  SFG+ + I+ +S   L    G+ +K   ++ + F+
Sbjct: 129 QLSSVLTTVNGLNKTDVLTLASSFGSFRNITEASQADLLRCAGLGEKKVNRLIDSFN 185


>gi|312984361|ref|ZP_07791702.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05]
 gi|310894255|gb|EFQ43336.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05]
          Length = 666

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I+ +G    RL+ Q F  +  I     + +ASI+ I   IA  +  +F
Sbjct: 511 GIDHVGAKAARLIAQKFKNLAKIMSLDVQEIASIDTIGMTIAESMTTYF 559


>gi|281179169|dbj|BAI55499.1| putative chaperone [Escherichia coli SE15]
          Length = 646

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 42/137 (30%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSP 556
           IAK        ++      E          L+      D A           R++     
Sbjct: 471 IAKRAMLEKMKDEILGLPEEE---KRDLAALH------DTA-----------RERQKQKF 510

Query: 557 LD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH- 606
           L+        I G+GP RK  L +SFG  T   ++R S      + G    +   + +  
Sbjct: 511 LEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVRGFGDHLTQAVIDWK 566

Query: 607 --------FHKNTSHTP 615
                   F  N + TP
Sbjct: 567 ASCERRFVFRPNEAVTP 583


>gi|255657267|ref|ZP_05402676.1| DNA ligase [Clostridium difficile QCD-23m63]
          Length = 674

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L  +F  +  +  ++ E L  +E     +A  +   F ++ +
Sbjct: 508 GIKFIGVKAAKILAYNFKDLDDVMSATSEQLEELEEFGSIMANSVVEFFKEDKN 561


>gi|229918383|ref|YP_002887029.1| DNA repair protein RadC [Exiguobacterium sp. AT1b]
 gi|229469812|gb|ACQ71584.1| DNA repair protein RadC [Exiguobacterium sp. AT1b]
          Length = 209

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 556 PLDEINGIGP---LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +I G GP      R +   + T++ +S++S   L  IEG++KK A ++   F
Sbjct: 15  RLLQIGGRGPDPMETARRISDVYPTLRALSQASVHDLCKIEGMTKKKAEQLLAAF 69


>gi|329924156|ref|ZP_08279373.1| comEA protein [Paenibacillus sp. HGF5]
 gi|328940841|gb|EGG37152.1| comEA protein [Paenibacillus sp. HGF5]
          Length = 220

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 8/49 (16%)

Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACK 602
           L E+ GIG  + + ++     FG  +     +   L +++GI  K+  K
Sbjct: 170 LMELPGIGEAKAKAIIDYRNQFGPFR-----TQADLMNVKGIGPKMLEK 213


>gi|296451892|ref|ZP_06893609.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
 gi|296879713|ref|ZP_06903688.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
 gi|296259274|gb|EFH06152.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
 gi|296429302|gb|EFH15174.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
          Length = 677

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L  +F  +  +  ++ E L  +E     +A  +   F ++ +
Sbjct: 511 GIKFIGVKAAKILAYNFKDLDDVMSATSEQLEELEEFGSIMANSVVEFFKEDKN 564


>gi|227113587|ref|ZP_03827243.1| DNA polymerase IV [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 352

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL++I G+G +  +                    LL+ FG    +           R SP
Sbjct: 177 PLEKIPGVGKVTAKRLEERGLYTCADVRVYALADLLKEFGKFGRVLWERCQGIDERRISP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  I++ 
Sbjct: 237 DRLRKSVGVEKTLAQDIHDW 256


>gi|226374630|gb|ACO52467.1| DNA repair endonuclease XPF [Liza aurata]
          Length = 897

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           L ++ G+     R L+++  ++  + + S + LA + G +   A  +Y   H N +  P
Sbjct: 832 LLKMPGVSMKNYRALIKNADSIADLVKLSQDELAEMLG-NTNNAKLLYEFLH-NAADVP 888


>gi|225460065|ref|XP_002271557.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 248

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 542 ITTHRKRRKKAAYS------PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           I+  R  RKK+          +  I GI       L Q+ G++K I+++S + +     +
Sbjct: 165 ISKLRAERKKSVQGMDVFLRVITSIPGIDNHDANSLNQAIGSIKAIAKASKDYILENTDL 224

Query: 596 SKKIACKIYNHFH 608
           S   A  I   F 
Sbjct: 225 SSDKAETITRFFR 237


>gi|254411541|ref|ZP_05025318.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
 gi|196182042|gb|EDX77029.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
          Length = 676

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +G +  ++L Q F +V  ++ +    + S+ GI  +IA  + + F 
Sbjct: 524 VGTVNAQILAQQFPSVDQLAAARVTDIESVYGIGSEIAQSVNDWFR 569


>gi|167044412|gb|ABZ09089.1| hypothetical protein ALOHA_HF4000APKG6D3ctg6g6 [uncultured marine
           crenarchaeote HF4000_APKG6D3]
          Length = 484

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 560 INGIGPLRKRLLL-QSFGTVKMISRSSPETLASIEGISKKIACK 602
           + GI    K +L+     TV+ +++++ + L  I+GI  K A K
Sbjct: 226 VAGISLKTKNMLVDNKLNTVEDLAKANIQDLTEIKGIGNKTAKK 269


>gi|261405572|ref|YP_003241813.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Paenibacillus sp. Y412MC10]
 gi|261282035|gb|ACX64006.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Paenibacillus sp. Y412MC10]
          Length = 220

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 8/49 (16%)

Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACK 602
           L E+ GIG  + + ++     FG  +     +   L +++GI  K+  K
Sbjct: 170 LMELPGIGEAKAKAIIDYRNQFGPFR-----TQADLMNVKGIGPKMLEK 213


>gi|167856020|ref|ZP_02478765.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus
           parasuis 29755]
 gi|167852859|gb|EDS24128.1| holliday junction ATP-dependent DNA helicase RuvA [Haemophilus
           parasuis 29755]
          Length = 202

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET 588
           +R++AH    F      +++++  +  L + NG+GP     +L +  +V     +   E 
Sbjct: 53  IREDAHLLFGFV-----QKQERMLFRELIKTNGVGPKLALAILSAM-SVSEFMSAIEQEE 106

Query: 589 LAS---IEGISKKIACKIYNHFH 608
           LA    I GI +K A ++     
Sbjct: 107 LAKLIKIPGIGRKTAERLLVELK 129


>gi|206975949|ref|ZP_03236859.1| DNA repair protein RadC [Bacillus cereus H3081.97]
 gi|217961943|ref|YP_002340513.1| DNA repair protein RadC [Bacillus cereus AH187]
 gi|222097900|ref|YP_002531957.1| DNA repair protein radc [Bacillus cereus Q1]
 gi|229141192|ref|ZP_04269731.1| DNA repair protein radC [Bacillus cereus BDRD-ST26]
 gi|226736618|sp|B7HQL1|Y4587_BACC7 RecName: Full=UPF0758 protein BCAH187_A4587
 gi|254764428|sp|B9IZ29|Y4241_BACCQ RecName: Full=UPF0758 protein BCQ_4241
 gi|206745701|gb|EDZ57098.1| DNA repair protein RadC [Bacillus cereus H3081.97]
 gi|217065490|gb|ACJ79740.1| DNA repair protein RadC [Bacillus cereus AH187]
 gi|221241958|gb|ACM14668.1| DNA repair protein [Bacillus cereus Q1]
 gi|228642233|gb|EEK98525.1| DNA repair protein radC [Bacillus cereus BDRD-ST26]
          Length = 225

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGVAKASQLIAAF 87


>gi|270307958|ref|YP_003330016.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
 gi|270153850|gb|ACZ61688.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
          Length = 680

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G     LL   +G +  ++ +  + L +I  I  KIA  I  +F +  +
Sbjct: 526 GIRHVGNETAALLSSRYGDIWALAGAGLDKLQTIPDIGAKIASSIKAYFSEEKN 579


>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
 gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
          Length = 932

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKIYNHFHKNTSH 613
            + G+G      LLQ  G+++ + + + + +A++ G   SK +A K+ +  +K+ + 
Sbjct: 192 GVPGVGDKTATALLQGIGSIEKLYQ-NLDDIAAL-GFRGSKTMAKKLID--NKDNAE 244


>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
 gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 11/53 (20%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRS---SPETL-ASIEG------ISKKIA 600
            I G+G      LL+ FGTV+  I  +   S + L   +E       +SK++A
Sbjct: 193 GIPGVGEKTAIKLLKQFGTVENLIQNAGEISAQKLREKVENNTEQAMMSKRLA 245


>gi|262047040|ref|ZP_06019999.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US]
 gi|293381897|ref|ZP_06627865.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1]
 gi|260572617|gb|EEX29178.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US]
 gi|290921544|gb|EFD98578.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1]
          Length = 668

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I+ +G    RL+ Q F  +  I     + +ASI+ I   IA  +  +F
Sbjct: 513 GIDHVGAKAARLIAQKFKNLAKIMSLDVQEIASIDTIGMTIAESMTTYF 561


>gi|253576343|ref|ZP_04853673.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844236|gb|EES72254.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 402

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMIS-RSSPETLASIEGISKKIACKI 603
           PL+ I G+GP +  LLL+ FGT   I        LA   G   ++A  I
Sbjct: 332 PLEFIPGLGPAKLELLLERFGTEMNILHHVPEAELAEAVG--AELAQLI 378


>gi|254470509|ref|ZP_05083913.1| DNA repair protein RadC [Pseudovibrio sp. JE062]
 gi|211960820|gb|EEA96016.1| DNA repair protein RadC [Pseudovibrio sp. JE062]
          Length = 275

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + LL  FG+   +  +  + L  + G   + A  I  
Sbjct: 99  KSLLAQFGSFAQVLAAPKQRLEEVPGCGPRTASFIKE 135


>gi|153813612|ref|ZP_01966280.1| hypothetical protein RUMOBE_04035 [Ruminococcus obeum ATCC 29174]
 gi|149830310|gb|EDM85403.1| hypothetical protein RUMOBE_04035 [Ruminococcus obeum ATCC 29174]
          Length = 228

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  S L  ++GIG  + + +L       F +       S E +  + GI +     I +
Sbjct: 172 ADASALKSLSGIGDAKAQAILTYREEHGFFS-------SIEEIMQVPGIKESTFSAIKD 223


>gi|54020611|ref|YP_116106.1| DNA polymerase I [Mycoplasma hyopneumoniae 232]
 gi|72080909|ref|YP_287967.1| 5'-3' exonuclease [Mycoplasma hyopneumoniae 7448]
 gi|53987784|gb|AAV27985.1| DNA polymerase I [Mycoplasma hyopneumoniae 232]
 gi|71914033|gb|AAZ53944.1| 5'-3' exonuclease [Mycoplasma hyopneumoniae 7448]
          Length = 294

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           I G+G      LL+ +  +  I       L +++ I++KIA +I
Sbjct: 197 IEGLGKKTAIKLLEKYKNLDNI-------LLNLDKINQKIANQI 233


>gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
 gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
          Length = 886

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL  FG+V+ +   + + L        K+  KI  H
Sbjct: 191 GVPGVGEKTALKLLHEFGSVEAVVSRT-DELKG------KMKEKIEEH 231


>gi|281414408|ref|ZP_06246150.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 549

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   R L  +FG++  +  +      + LA I+G+   IA  +   F ++
Sbjct: 369 SIRHVGPTAARSLATAFGSMTALRAAAEAGDRDRLAEIDGVGPIIADALIEWFAED 424


>gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
 gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
          Length = 886

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL  FG+V+ +   + + L        K+  KI  H
Sbjct: 191 GVPGVGEKTALKLLHEFGSVEAVVSRT-DELKG------KMKEKIEEH 231


>gi|239917127|ref|YP_002956685.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
 gi|239838334|gb|ACS30131.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
          Length = 797

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   R L  +FG++  +  +      + LA I+G+   IA  +   F ++
Sbjct: 617 SIRHVGPTAARSLATAFGSMTALRAAAEAGDRDRLAEIDGVGPIIADALIEWFAED 672


>gi|83592071|ref|YP_425823.1| DNA repair protein RadC [Rhodospirillum rubrum ATCC 11170]
 gi|83574985|gb|ABC21536.1| DNA repair protein RadC [Rhodospirillum rubrum ATCC 11170]
          Length = 243

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598
           + LL +FG+   +  +SPE L  ++G+   
Sbjct: 67  KALLATFGSFARVISASPEALRRVDGVGDA 96


>gi|28211670|ref|NP_782614.1| come operon protein 1 [Clostridium tetani E88]
 gi|28204112|gb|AAO36551.1| come operon protein 1 [Clostridium tetani E88]
          Length = 188

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 18/72 (25%)

Query: 546 RKRRK----KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGI 595
           RK+ K    KA+   L  I GIG +    ++        F ++        E + +I+ I
Sbjct: 122 RKKDKINLNKASKEELKSIPGIGDVTAEKIVNYRKENNGFNSI--------EEIKNIDRI 173

Query: 596 SKKIACKIYNHF 607
            +K   KI +  
Sbjct: 174 GEKTFEKIKDKL 185



 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKN 610
            ++++S E L SI GI    A KI N+  +N
Sbjct: 128 NLNKASKEELKSIPGIGDVTAEKIVNYRKEN 158


>gi|85708859|ref|ZP_01039925.1| DNA ligase [Erythrobacter sp. NAP1]
 gi|85690393|gb|EAQ30396.1| DNA ligase [Erythrobacter sp. NAP1]
          Length = 698

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 559 EINGIGPLRKRLLLQS------FGTVKMISRSSPE----TLASIEGISKKIACKIYNHFH 608
            I  +G +  R LL+         T+   +R+  E     L +I+GI   +   + + FH
Sbjct: 535 GIRHVGEVTARDLLKHVHELPALRTIAEKARAGDEDAASELTAIDGIGPSVVEALGDFFH 594

Query: 609 K 609
           +
Sbjct: 595 E 595


>gi|189347603|ref|YP_001944132.1| Helix-hairpin-helix DNA-binding class 1 [Chlorobium limicola DSM
           245]
 gi|189341750|gb|ACD91153.1| Helix-hairpin-helix DNA-binding class 1 [Chlorobium limicola DSM
           245]
          Length = 183

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 15/64 (23%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP-------ETLASIEGISKKIACKI 603
           KA+   L +I+G+GP+  + L+          R+S        E L  ++GI KK    +
Sbjct: 125 KASEKQLQQISGVGPVMAKRLVTF--------RASKGGRIERHEELLEVKGIGKKKLEIL 176

Query: 604 YNHF 607
             H 
Sbjct: 177 KKHL 180


>gi|328951740|ref|YP_004369075.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Marinithermus hydrothermalis DSM 14884]
 gi|328452064|gb|AEB12965.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Marinithermus hydrothermalis DSM 14884]
          Length = 163

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +A    L+ + GIGP + R +++       +     E L  + GI +K   ++  +
Sbjct: 111 RATLEELEALPGIGPTKARRIMEY---RPYLR---VEDLLRVPGIGEKTLERLRPY 160


>gi|256847005|ref|ZP_05552451.1| competence protein [Lactobacillus coleohominis 101-4-CHN]
 gi|256715669|gb|EEU30644.1| competence protein [Lactobacillus coleohominis 101-4-CHN]
          Length = 210

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L +I+G+G  +   +L+     G+ K     +P+ L +I G  +K   K+ +  
Sbjct: 155 ATKEELTKIDGVGDKKADKILEYRNQHGSFK-----TPDDLKNITGFGEKTVAKLKDQL 208


>gi|229198583|ref|ZP_04325285.1| DNA repair protein radC [Bacillus cereus m1293]
 gi|228584865|gb|EEK42981.1| DNA repair protein radC [Bacillus cereus m1293]
          Length = 225

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGVAKASQLIAAF 87


>gi|188581415|ref|YP_001924860.1| DNA repair protein RadC [Methylobacterium populi BJ001]
 gi|179344913|gb|ACB80325.1| DNA repair protein RadC [Methylobacterium populi BJ001]
          Length = 246

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + L++ FG+   +  + P  LA +EG+S  +A  + 
Sbjct: 70  KALIRRFGSFAEVVSAEPARLAEVEGVSAGVAADLK 105


>gi|73670944|ref|YP_306959.1| ski2-like helicase [Methanosarcina barkeri str. Fusaro]
 gi|121723325|sp|Q465R3|HELS_METBF RecName: Full=Putative ski2-type helicase
 gi|72398106|gb|AAZ72379.1| helicase [Methanosarcina barkeri str. Fusaro]
          Length = 729

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L  I GIG +R R L ++ F +   ++   PE +A++ G   KIA +I+    
Sbjct: 651 LLNIRGIGRVRARKLYEAGFKSSAELAEVDPEKVAALLG--PKIADRIFKQIR 701


>gi|186680717|ref|YP_001863913.1| NAD-dependent DNA ligase LigA [Nostoc punctiforme PCC 73102]
 gi|254781381|sp|B2J3P0|DNLJ_NOSP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|186463169|gb|ACC78970.1| DNA ligase, NAD-dependent [Nostoc punctiforme PCC 73102]
          Length = 678

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I  +G +  +LL Q + TV+ ++ +    +  I GI  +IA  +Y  F  + + 
Sbjct: 522 GIRHVGSVNAQLLTQKYFTVEQLATAKQSDIEGIYGIGAEIAQSVYQWFRIDANQ 576



 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 559 EINGIGPLRKRLL----LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +I G+G      L    L    +V  +   + E L ++E + +K A K+ +   ++ +  
Sbjct: 456 DIKGLGEKLVHQLVDKVLVH--SVADLYELTAEKLCALERMGQKSAEKLVDAIAQSKNQP 513


>gi|262202398|ref|YP_003273606.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Gordonia bronchialis DSM 43247]
 gi|262085745|gb|ACY21713.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Gordonia bronchialis DSM 43247]
          Length = 347

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 18/37 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           L  + G+G      L+  FG++  +  ++ +  +S+ 
Sbjct: 229 LPGVPGVGEKTAATLISEFGSLDNLEAAAADPSSSVP 265


>gi|224179540|ref|YP_002601067.1| putative site-specific DNA endonuclease [Monomastix sp. OKE-1]
 gi|217314583|gb|ACK36926.1| putative site-specific DNA endonuclease [Monomastix sp. OKE-1]
          Length = 219

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM----HSNNHTHRITHMISQ--INNI 58
            +P  PG+Y + +     +Y+G++ N+ +R++++        +   ++T       I++ 
Sbjct: 18  SLPVFPGIYSIKNTQTGFIYIGQSKNIIQRLRAHRSMLERETHQNKKMTEDCKIYGIHSF 77

Query: 59  RFTVT--CTEVEA----LLLEANMIKRL 80
             ++     E E+    L LE   IK+ 
Sbjct: 78  EVSILLEGIEYESNDLRLSLEKEYIKKF 105


>gi|167755866|ref|ZP_02427993.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402]
 gi|237734834|ref|ZP_04565315.1| holliday junction DNA helicase subunit RuvA [Mollicutes bacterium
           D7]
 gi|167704805|gb|EDS19384.1| hypothetical protein CLORAM_01383 [Clostridium ramosum DSM 1402]
 gi|229382162|gb|EEO32253.1| holliday junction DNA helicase subunit RuvA [Coprobacillus sp. D7]
          Length = 188

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNH 606
           K  +  L  + GIG      +L + G V  I  +    +   L  I GI  K A +I   
Sbjct: 66  KEMFLKLILVKGIGCKTAIGILAT-GDVTSIISAIETGNVAYLKKIPGIGPKAAQQIILD 124

Query: 607 FHKNTSHTPT 616
                 +TPT
Sbjct: 125 LQGKFKNTPT 134


>gi|154509308|ref|ZP_02044950.1| hypothetical protein ACTODO_01833 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798942|gb|EDN81362.1| hypothetical protein ACTODO_01833 [Actinomyces odontolyticus ATCC
           17982]
          Length = 231

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 14/58 (24%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSS------PETLASIEGISKKIACKI 603
           A  + L  + GIGP   + ++          R++       E L  + GI   +  KI
Sbjct: 177 ATEAELQTLPGIGPSLAQRIISY--------RATHPRLSTVEELDDVPGIGPSLIEKI 226


>gi|146302794|ref|YP_001190110.1| DNA repair and recombination protein RadA [Metallosphaera sedula
           DSM 5348]
 gi|226736609|sp|A4YCN4|RADA_METS5 RecName: Full=DNA repair and recombination protein radA
 gi|145701044|gb|ABP94186.1| DNA repair and recombination protein RadA [Metallosphaera sedula
           DSM 5348]
          Length = 324

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           K+R K       +++G+G      L ++ + T++ I+ +SP+ L++  GI    A +I
Sbjct: 8   KKRIKTVK----DLSGVGQAVLNKLTEAGYSTLESIAVASPQDLSTAAGIPITTAQRI 61


>gi|283850563|ref|ZP_06367851.1| PHP domain protein [Desulfovibrio sp. FW1012B]
 gi|283574134|gb|EFC22106.1| PHP domain protein [Desulfovibrio sp. FW1012B]
          Length = 574

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYNHFHKNTSH 613
           L  + G+GP R   L ++ G   ++ + +++    L ++ G   K    I     + +  
Sbjct: 96  LLAVPGLGPKRVAALHKALGITDLEGLRQAAAAGKLQTLPGFGAKAEANILAALDRKSKS 155

Query: 614 TPT 616
             T
Sbjct: 156 GDT 158


>gi|34556584|ref|NP_906399.1| hypothetical protein WS0136 [Wolinella succinogenes DSM 1740]
 gi|34556757|ref|NP_906572.1| competence proetin 1 [Wolinella succinogenes DSM 1740]
 gi|34482298|emb|CAE09299.1| hypothetical protein WS0136 [Wolinella succinogenes]
 gi|34482471|emb|CAE09472.1| COMPETENCE PROETIN 1 [Wolinella succinogenes]
          Length = 81

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ ++ E L  ++GI +K A  I  H
Sbjct: 21  NINTATKEDLMKVKGIGEKKAEAIIEH 47



 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L ++ GIG  +   +++       F ++        E L S++G  +K    + +
Sbjct: 25  ATKEDLMKVKGIGEKKAEAIIEHRTKNGAFKSL--------EELKSVKGFGEKSVEGLKS 76

Query: 606 HF 607
             
Sbjct: 77  EL 78


>gi|239817003|ref|YP_002945913.1| DNA repair protein RadC [Variovorax paradoxus S110]
 gi|259551914|sp|C5CWP0|Y4033_VARPS RecName: Full=UPF0758 protein Vapar_4033
 gi|239803580|gb|ACS20647.1| DNA repair protein RadC [Variovorax paradoxus S110]
          Length = 225

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS--KKIACKI 603
           + LL  FG +  + ++S E L  I+G+    K A  I
Sbjct: 48  QELLDHFGGLSGLLQTSAEDLKVIKGMGGDAKRAELI 84


>gi|152206740|gb|ABS30731.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 162

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
               L  + GIGP +   LL  FG+++ I     E +  I G +K+     Y   H
Sbjct: 54  TSDRLKGVAGIGPKKAVSLLNEFGSLEAIY----ENIGKISGKTKEYLENDYESAH 105


>gi|151505397|gb|ABG29153.2| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|151505399|gb|ABG29157.2| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 162

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
               L  + GIGP +   LL  FG+++ I     E +  I G +K+     Y   H
Sbjct: 54  TSDRLKGVAGIGPKKAVSLLNEFGSLEAIY----ENIGKISGKTKEYLENDYESAH 105


>gi|109289304|gb|ABG29147.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 161

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
               L  + GIGP +   LL  FG+++ I     E +  I G +K+     Y   H
Sbjct: 53  TSDRLKGVAGIGPKKAVSLLNEFGSLEAIY----ENIGKISGKTKEYLENDYESAH 104


>gi|146320931|ref|YP_001200642.1| DNA repair protein RadC [Streptococcus suis 98HAH33]
 gi|229485571|sp|A4W1K3|Y1084_STRS2 RecName: Full=UPF0758 protein SSU98_1084
 gi|145691737|gb|ABP92242.1| putative DNA repair protein [Streptococcus suis 98HAH33]
          Length = 246

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL    ++  +   S E L S+ GI +  A +I  
Sbjct: 50  KLLNRLESLAALRELSIEELQSLTGIGRVKAIEIKA 85


>gi|46446396|ref|YP_007761.1| transcription elongation factor NusA [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400037|emb|CAF23486.1| putative transcription termination-antitermination factor nusA
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 424

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 11/60 (18%)

Query: 556 PLDEINGIGPLRKRLLL-QS-----FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           PL  I GI       L+        + T+K +  ++P+ LA+I GIS ++A KI     K
Sbjct: 367 PLVGIEGI-----NSLIFDHLVDAGYHTLKSLLTATPKELAAIPGISLEMADKILEQIRK 421


>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
 gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ FGT++ +   S +    + G  KK+  K+   
Sbjct: 193 GVPGVGEKTALKLLKEFGTLEELLD-SVD---KVSG--KKLKEKLEEF 234


>gi|298674967|ref|YP_003726717.1| PHP domain-containing protein [Methanohalobium evestigatum Z-7303]
 gi|298287955|gb|ADI73921.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
          Length = 573

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 556 PLDEINGIGPLRKRLLLQ-----SFGTVKMISR---SSPETLASIEGISKKIACKIYNHF 607
            LD I G+G   K  ++      +F   + I +    + E L +I G+  +I   +Y   
Sbjct: 52  RLDSIPGVGKSFKNKIVDILNTGTFSEYEKIRQEIPVNIEELMAIPGMGPRITQFLYKRL 111


>gi|295692390|ref|YP_003601000.1| DNA ligase [Lactobacillus crispatus ST1]
 gi|295030496|emb|CBL49975.1| DNA ligase [Lactobacillus crispatus ST1]
          Length = 668

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I+ +G    RL+ Q F  +  I     + +ASI+ I   IA  +  +F
Sbjct: 513 GIDHVGAKAARLIAQKFKNLAKIMSLDVQEIASIDTIGMTIAESMTTYF 561


>gi|227877013|ref|ZP_03995105.1| DNA ligase [Lactobacillus crispatus JV-V01]
 gi|256850560|ref|ZP_05555986.1| DNA ligase [Lactobacillus crispatus MV-1A-US]
 gi|227863384|gb|EEJ70811.1| DNA ligase [Lactobacillus crispatus JV-V01]
 gi|256712583|gb|EEU27578.1| DNA ligase [Lactobacillus crispatus MV-1A-US]
          Length = 668

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I+ +G    RL+ Q F  +  I     + +ASI+ I   IA  +  +F
Sbjct: 513 GIDHVGAKAARLIAQKFKNLAKIMSLDVQEIASIDTIGMTIAESMTTYF 561


>gi|213692039|ref|YP_002322625.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254766945|sp|B7GR17|RUVA_BIFLI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|213523500|gb|ACJ52247.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458151|dbj|BAJ68772.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 208

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTV------KMISRSSPETLASIEGISKKIAC 601
           R  K  +  L +++GIGP   + LL   GT+      + I+ +    LA   G+ +K A 
Sbjct: 65  RDSKRVFLQLIKVSGIGPKVAQSLL---GTMTPSQLARAIADNDAAALAKAPGLGRKGAQ 121

Query: 602 KI 603
           KI
Sbjct: 122 KI 123


>gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122]
 gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122]
          Length = 876

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 9/51 (17%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G+   G      LL  FGTV+ +     + ++      KK+  K+ N
Sbjct: 188 DNIPGVAGVGEKTAIKLLNQFGTVEGVYE-HLDEIS-----GKKLKEKLQN 232


>gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032]
 gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032]
          Length = 899

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS--KKIACKIYNH 606
           L  + G+GP      + ++G V+ I  +  + +    G S  +++A  I N+
Sbjct: 195 LPGVPGVGPKTAAKWINTYGGVEGII-ARADEIKGKAGDSLRERLADVIRNY 245


>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 965

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + GIGP     L+Q +GT++ +  ++PE
Sbjct: 221 GVPGIGPKTAAALVQEYGTLEAVLNAAPE 249


>gi|325982125|ref|YP_004294527.1| hypothetical protein NAL212_1481 [Nitrosomonas sp. AL212]
 gi|325531644|gb|ADZ26365.1| hypothetical protein NAL212_1481 [Nitrosomonas sp. AL212]
          Length = 146

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI-ACKIYN 605
            L ++ GIGP+  ++L +    TV+ ++  S   L  I G S  I A  +  
Sbjct: 3   KLTDVTGIGPITVKILSEHKIRTVEALAAISLTELQKIPGFSGAIRARAVKK 54


>gi|307596612|ref|YP_003902929.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa
           DSM 14429]
 gi|307551813|gb|ADN51878.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa
           DSM 14429]
          Length = 388

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           +EI G+G +  + L ++ + T + ++ +S + LA I G S+  A +I     K    TP
Sbjct: 83  EEIEGVGRVTAQKLREAGYNTARDVAFASVKELAEILG-SEDRAKQIIAAAQKLIGLTP 140


>gi|307591615|ref|YP_003900414.1| excinuclease ABC C subunit domain-containing protein [Cyanothece
          sp. PCC 7822]
 gi|306986469|gb|ADN18348.1| Excinuclease ABC C subunit domain protein [Cyanothece sp. PCC
          7822]
          Length = 286

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 6  MPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSY 38
          +P CP +Y +LD    + Y+GKA NLQKR K++
Sbjct: 20 LPTCPAIYFVLDSKNIIHYIGKADNLQKRWKNH 52


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPE 587
            + GIGP     L+Q +GT++ +  ++PE
Sbjct: 190 GVPGIGPKTAAALVQEYGTLEAVLNAAPE 218


>gi|256844676|ref|ZP_05550161.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN]
 gi|256613217|gb|EEU18421.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN]
          Length = 668

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I+ +G    RL+ Q F  +  I     + +ASI+ I   IA  +  +F
Sbjct: 513 GIDHVGAKAARLIAQKFKNLAKIMSLDVQEIASIDTIGMTIAESMTTYF 561


>gi|104773858|ref|YP_618838.1| metallo-beta-lactamase family hydrolase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422939|emb|CAI97601.1| Putative hydrolase (metallo-beta-lactamase superfamily)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 614

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 6   MPECP----GVYQ---MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR----ITHMISQ 54
           +P       G Y      +  GR++  GKA NL  R++   ++   T R        +++
Sbjct: 201 LPNASENEVGTYITNVFRNAKGRIIVAGKASNL-NRVQQVFNAAAATGRRVLLTGRDVAK 259

Query: 55  INN 57
           I +
Sbjct: 260 IVH 262


>gi|93004953|ref|YP_579390.1| competence protein ComEA helix-hairpin-helix region [Psychrobacter
           cryohalolentis K5]
 gi|92392631|gb|ABE73906.1| Competence protein ComEA helix-hairpin-helix region [Psychrobacter
           cryohalolentis K5]
          Length = 143

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 8/52 (15%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKI 599
           +A    L  ++GIG  + + ++     FG+ +     + + L  ++GI  K 
Sbjct: 85  RATEGELTLLHGIGSNKAQAIILYREMFGSFR-----TVDELTKVKGIGAKT 131


>gi|52141051|ref|YP_085777.1| DNA repair protein RadC [Bacillus cereus E33L]
 gi|81686057|sp|Q633Z0|Y4198_BACCZ RecName: Full=UPF0758 protein BCE33L4198
 gi|51974520|gb|AAU16070.1| DNA repair protein [Bacillus cereus E33L]
          Length = 225

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGVAKASQLIAAF 87


>gi|296315242|ref|ZP_06865183.1| competence protein comEA [Neisseria polysaccharea ATCC 43768]
 gi|296837802|gb|EFH21740.1| competence protein comEA [Neisseria polysaccharea ATCC 43768]
          Length = 99

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+ + GIGP + + + +       F +V        + L  ++GI   +  K+ +
Sbjct: 30  ELEVLPGIGPAKAKAIAEYRAQNGAFKSV--------DDLTKVKGIGPAVLAKLKD 77


>gi|282853367|ref|ZP_06262704.1| putative DNA integrity scanning protein [Propionibacterium acnes
           J139]
 gi|282582820|gb|EFB88200.1| putative DNA integrity scanning protein [Propionibacterium acnes
           J139]
 gi|314922353|gb|EFS86184.1| putative DNA integrity scanning protein [Propionibacterium acnes
           HL001PA1]
 gi|314965344|gb|EFT09443.1| putative DNA integrity scanning protein [Propionibacterium acnes
           HL082PA2]
 gi|314982577|gb|EFT26669.1| putative DNA integrity scanning protein [Propionibacterium acnes
           HL110PA3]
 gi|315091102|gb|EFT63078.1| putative DNA integrity scanning protein [Propionibacterium acnes
           HL110PA4]
 gi|315094188|gb|EFT66164.1| putative DNA integrity scanning protein [Propionibacterium acnes
           HL060PA1]
 gi|315104844|gb|EFT76820.1| putative DNA integrity scanning protein [Propionibacterium acnes
           HL050PA2]
 gi|327329289|gb|EGE71049.1| putative DNA-binding protein [Propionibacterium acnes HL103PA1]
          Length = 367

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            HR+       S             + ++  F  ++ +  +S   L+ I+G+  + A +I
Sbjct: 299 GHRQLTLMTDLSS---------RTIQRIIDHFNDLQSLVSASTSELSDIKGVGLRRAREI 349

Query: 604 YNHF 607
               
Sbjct: 350 RQGL 353


>gi|168178803|ref|ZP_02613467.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|226950961|ref|YP_002806052.1| DNA integrity scanning protein DisA [Clostridium botulinum A2 str.
           Kyoto]
 gi|254777853|sp|C1FNB1|DISA_CLOBJ RecName: Full=DNA integrity scanning protein disA
 gi|182670150|gb|EDT82126.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|226841239|gb|ACO83905.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 353

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+ +F  +K +  +S E L ++EGI +  A  I N   +
Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRR 343


>gi|15669060|ref|NP_247864.1| DNA repair and recombination protein RadA [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2500109|sp|Q49593|RADA_METJA RecName: Full=DNA repair and recombination protein radA
 gi|1378034|gb|AAC44122.1| RadA [Methanocaldococcus jannaschii]
 gi|1591553|gb|AAB98875.1| DNA repair protein RAD51 (radA) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 352

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKK 598
           L ++ G+GP     L ++ +     I+ +S   L  I+GIS+K
Sbjct: 36  LTQLPGVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGISEK 78


>gi|256823002|ref|YP_003146965.1| Excinuclease ABC subunit C domain-containing protein [Kangiella
          koreensis DSM 16069]
 gi|256796541|gb|ACV27197.1| Excinuclease ABC C subunit domain protein [Kangiella koreensis
          DSM 16069]
          Length = 96

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 12 VYQMLDIAGRVLYVGKAYNLQKRIKSY-------MHSNNHTHRITHMISQINNIRFTVT 63
          VY M    G V+Y+G   NL KR+  +              ++   ++   ++I   + 
Sbjct: 6  VYIMASRKGGVIYIGVTGNLIKRVHQHREGLVDGFSKQ---YKTKRLVYFESSIDIKLC 61


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
          Length = 931

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + L+  FG+++ +  +  + L 
Sbjct: 199 DNIPGCPGVGEKTAQKLIAQFGSIENLL-AHTDELK 233


>gi|169334550|ref|ZP_02861743.1| hypothetical protein ANASTE_00953 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259267|gb|EDS73233.1| hypothetical protein ANASTE_00953 [Anaerofustis stercorihominis DSM
           17244]
          Length = 383

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETL---ASIEGISKKIACKI 603
           L  I  IG  R   L   FG++  I     + +     + GI+  IA ++
Sbjct: 9   LMSIQNIGAKRAINLYDYFGSIDEIYL--NDDINKYTKVSGITLDIATRL 56


>gi|225163857|ref|ZP_03726152.1| DNA protecting protein DprA [Opitutaceae bacterium TAV2]
 gi|224801538|gb|EEG19839.1| DNA protecting protein DprA [Opitutaceae bacterium TAV2]
          Length = 388

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
            L+ +  IGP+    LL + G   + I  ++P  L  ++G+  +I+  I N 
Sbjct: 10  ILNALPDIGPITTNRLLDALGGDPRAILDATPAQLEQVKGVGARISGNILNW 61


>gi|114799084|ref|YP_761435.1| GIY-YIG domain-containing protein [Hyphomonas neptunium ATCC 15444]
 gi|114739258|gb|ABI77383.1| GIY-YIG domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 156

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 21/95 (22%)

Query: 1   MSSEQMPECPGVYQMLDIAGR----VLYVGKAYNLQKRIKSYMH------SNNHTHRITH 50
           ++ + + E  GVY  +          LY+GKA NL+ R+  +        +   T R   
Sbjct: 28  LTRKGITEGSGVYIFVRRRFAFFLFPLYIGKATNLKSRLYGHERWWEAWWNRGATERHVL 87

Query: 51  MISQINNIRFTVTCTEVEALLLEANMIKRLKPRFN 85
           ++            ++  A + E ++I+R +P+ N
Sbjct: 88  IVRG---------GSDR-ARV-EEDLIRRYQPKMN 111


>gi|87124164|ref|ZP_01080014.1| hypothetical protein RS9917_11151 [Synechococcus sp. RS9917]
 gi|86168733|gb|EAQ69990.1| hypothetical protein RS9917_11151 [Synechococcus sp. RS9917]
          Length = 294

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 11  GVYQMLDIA----GRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTE 66
           GVY ++        R++YVG+  +L+ R+ ++    +   R   +IS+ N++      T+
Sbjct: 53  GVYFLIGEDTEDGDRLVYVGQTGDLRSRLTAHNQKKDCWERALVLISKTNSL------TQ 106

Query: 67  VEALLLE 73
             AL LE
Sbjct: 107 THALFLE 113


>gi|225375312|ref|ZP_03752533.1| hypothetical protein ROSEINA2194_00937 [Roseburia inulinivorans DSM
           16841]
 gi|225212801|gb|EEG95155.1| hypothetical protein ROSEINA2194_00937 [Roseburia inulinivorans DSM
           16841]
          Length = 359

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           L  I G+G      LL   G+ + I     E L  + G+S +    I
Sbjct: 7   LSNIPGVGCKTIHRLLGQAGSAEEIYFLKKEQLEKLSGLSDRQVHAI 53


>gi|261418465|ref|YP_003252147.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. Y412MC61]
 gi|319767574|ref|YP_004133075.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. Y412MC52]
 gi|261374922|gb|ACX77665.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. Y412MC61]
 gi|317112440|gb|ADU94932.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. Y412MC52]
          Length = 207

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L ++ GIGP + + ++      G  + +     E L ++ GI +K   K+  + 
Sbjct: 151 ATEEELMQLPGIGPAKAKAIIAYREEHGPFQRV-----EDLLNVTGIGEKTLEKLKPYL 204


>gi|161527751|ref|YP_001581577.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339052|gb|ABX12139.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 709

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 546 RKRRKKAAYSPLDE---INGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIAC 601
           R+R        L +   + GIG +R R+L +     +  +++     LA I+ I   IA 
Sbjct: 639 RRRISYGIREELLDLVRVKGIGRVRARILFKHGIKNLDDLAKIPVNKLAEIDKIGSTIAD 698

Query: 602 KIYNHFHK 609
            I     +
Sbjct: 699 NIKTELRR 706


>gi|119492307|ref|ZP_01623654.1| SMF protein [Lyngbya sp. PCC 8106]
 gi|119453192|gb|EAW34359.1| SMF protein [Lyngbya sp. PCC 8106]
          Length = 390

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI---------YNHFHK 609
           +I+G+GP+  + L Q  G +     +S + L  +EG   +   K+              K
Sbjct: 13  QISGVGPIALQRLRQHCGNLATAWEASTQELRQVEGFGPQTVEKVAQQRAKFNCVEFIKK 72

Query: 610 NTSHTP 615
           ++   P
Sbjct: 73  HSEKNP 78


>gi|56421052|ref|YP_148370.1| late competence DNA binding and uptake protein [Geobacillus
           kaustophilus HTA426]
 gi|56380894|dbj|BAD76802.1| late competence protein (DNA binding and uptake) [Geobacillus
           kaustophilus HTA426]
          Length = 207

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L ++ GIGP + + ++      G  + +     E L ++ GI +K   K+  + 
Sbjct: 151 ATEEELMQLPGIGPAKAKAIIAYREEHGPFQRV-----EDLLNVTGIGEKTLEKLKPYL 204


>gi|283798899|ref|ZP_06348052.1| helicase, RecD/TraA family [Clostridium sp. M62/1]
 gi|291073361|gb|EFE10725.1| helicase, RecD/TraA family [Clostridium sp. M62/1]
          Length = 785

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ F T    I    PE LA I+GIS+K+A  I
Sbjct: 90  IKGIGAALASRIVKKFKTDTFRIMEEEPERLAEIKGISEKMAMAI 134


>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
 gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
          Length = 894

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 12/52 (23%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASI--------EGISKKIACK 602
            + G+G      L+QS G++K I +     L ++        + + +K+A  
Sbjct: 170 GVPGVGEKTALALIQSLGSIKDIYQ----DLEAVRSLDFRGAKKMPEKLAEN 217


>gi|187776549|ref|ZP_02993022.1| hypothetical protein CLOSPO_00061 [Clostridium sporogenes ATCC
           15579]
 gi|187775208|gb|EDU39010.1| hypothetical protein CLOSPO_00061 [Clostridium sporogenes ATCC
           15579]
          Length = 356

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+ +F  +K +  +S E L ++EGI +  A  I N   +
Sbjct: 305 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRR 346


>gi|188992907|ref|YP_001904917.1| Exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734667|emb|CAP52877.1| Exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris]
          Length = 332

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETL 589
           D I GI   G     +LL  FG++  +     + L
Sbjct: 206 DNIPGITGIGAKSAAVLLAHFGSLDALLE-RLDEL 239


>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 900

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FG++  I             I +    +I     +N +  
Sbjct: 201 GVPGVGLKTAAELLAQFGSLSAIYE----------RIGEVKKPRIRESLQQNEADA 246


>gi|148381449|ref|YP_001255990.1| DNA integrity scanning protein DisA [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933678|ref|YP_001385824.1| DNA integrity scanning protein DisA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935579|ref|YP_001389231.1| DNA integrity scanning protein DisA [Clostridium botulinum A str.
           Hall]
 gi|153940121|ref|YP_001392862.1| DNA integrity scanning protein DisA [Clostridium botulinum F str.
           Langeland]
 gi|170755550|ref|YP_001783149.1| DNA integrity scanning protein DisA [Clostridium botulinum B1 str.
           Okra]
 gi|189083126|sp|A7GJA2|DISA_CLOBL RecName: Full=DNA integrity scanning protein disA
 gi|226729436|sp|A7FZ95|DISA_CLOB1 RecName: Full=DNA integrity scanning protein disA
 gi|226729439|sp|A5I7N4|DISA_CLOBH RecName: Full=DNA integrity scanning protein disA
 gi|226729440|sp|B1IGI2|DISA_CLOBK RecName: Full=DNA integrity scanning protein disA
 gi|148290933|emb|CAL85069.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929722|gb|ABS35222.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931493|gb|ABS36992.1| putative DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|152936017|gb|ABS41515.1| putative DNA-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|169120762|gb|ACA44598.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|295320840|gb|ADG01218.1| putative DNA-binding protein [Clostridium botulinum F str. 230613]
 gi|322807835|emb|CBZ05410.1| DNA integrity scanning protein disA [Clostridium botulinum H04402
           065]
          Length = 353

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+ +F  +K +  +S E L ++EGI +  A  I N   +
Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRR 343


>gi|119473243|ref|ZP_01614920.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7]
 gi|119444537|gb|EAW25854.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7]
          Length = 98

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 14/49 (28%)

Query: 557 LDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKI 599
           L ++ GIG  + + ++        F ++        E LA ++GI KK+
Sbjct: 48  LAKLPGIGKKKAQAIVNYRDENGVFTSL--------EDLAKVKGIGKKV 88


>gi|71893931|ref|YP_279377.1| putative 5'-3' exonuclease [Mycoplasma hyopneumoniae J]
 gi|71852058|gb|AAZ44666.1| putative 5'-3' exonuclease [Mycoplasma hyopneumoniae J]
          Length = 294

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           I G+G      LL+ +  +  I       L +++ I++KIA +I
Sbjct: 197 IEGLGKKTAIKLLEKYKNLDNI-------LLNLDKINQKIANQI 233


>gi|21230313|ref|NP_636230.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769693|ref|YP_244455.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21111863|gb|AAM40154.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575025|gb|AAY50435.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 332

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETL 589
           D I GI   G     +LL  FG++  +     + L
Sbjct: 206 DNIPGITGIGAKSAAVLLAHFGSLDALLE-RLDEL 239


>gi|296132070|ref|YP_003639317.1| helicase, RecD/TraA family [Thermincola sp. JR]
 gi|296030648|gb|ADG81416.1| helicase, RecD/TraA family [Thermincola potens JR]
          Length = 709

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           K   S L  I GIGP+  R ++  F   T+++I     + L  +EGI +K    I   + 
Sbjct: 80  KYLGSGL--IKGIGPVYARRIVNHFREDTLRVIEE-QADRLLEVEGIGQKRVEMIKKAWQ 136

Query: 609 K 609
           +
Sbjct: 137 E 137


>gi|206889338|ref|YP_002248715.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|226698744|sp|B5YKF0|RUVA_THEYD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|206741276|gb|ACI20333.1| holliday junction DNA helicase RuvA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 190

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISR-SSPETLASIEGISKKIACKIYNHF 607
           +  +  L +I GIGP     +L ++   T+  I      ++L+ I GI KK A +I    
Sbjct: 68  RDLFEELIKIAGIGPKMAINILSTYDRETLYKIIDHEDIKSLSKIPGIGKKTAQRILLEL 127

Query: 608 H 608
            
Sbjct: 128 R 128


>gi|170759473|ref|YP_001788849.1| DNA integrity scanning protein DisA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|226729441|sp|B1KTB1|DISA_CLOBM RecName: Full=DNA integrity scanning protein disA
 gi|169406462|gb|ACA54873.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 353

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+ +F  +K +  +S E L ++EGI +  A  I N   +
Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRR 343


>gi|168181835|ref|ZP_02616499.1| putative DNA-binding protein [Clostridium botulinum Bf]
 gi|237796970|ref|YP_002864522.1| DNA integrity scanning protein DisA [Clostridium botulinum Ba4 str.
           657]
 gi|259645240|sp|C3KVS9|DISA_CLOB6 RecName: Full=DNA integrity scanning protein disA
 gi|182674824|gb|EDT86785.1| putative DNA-binding protein [Clostridium botulinum Bf]
 gi|229261401|gb|ACQ52434.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 353

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L+ +F  +K +  +S E L ++EGI +  A  I N   +
Sbjct: 302 IENLVANFNQLKCVMEASYEQLDNVEGIGEARAKAIKNGLRR 343


>gi|254360614|ref|ZP_04976763.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           PHL213]
 gi|153091154|gb|EDN73159.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           PHL213]
          Length = 201

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET- 588
           +R++AH    FA     +++ +  +  L + NG+GP     +L +  +V   + +     
Sbjct: 53  VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVSQFATAIENEE 106

Query: 589 ---LASIEGISKKIACKIYNHFH 608
              L  I GI +K A ++     
Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129


>gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
 gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
          Length = 888

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IGP     LL+ FG+++ I  
Sbjct: 184 DNIPGVKGIGPKTAVKLLEQFGSLEGIYE 212


>gi|28189070|dbj|BAC56220.1| putative DNA repair protein [Streptococcus suis]
          Length = 226

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL    ++  +   S E L S+ GI +  A +I  
Sbjct: 50  KLLNRLESLAALRELSIEELQSLTGIGRVKAIEIKA 85


>gi|117926963|ref|YP_867580.1| Fis family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|166215818|sp|A0LDY1|DNLJ_MAGSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|117610719|gb|ABK46174.1| transcriptional regulator, Fis family [Magnetococcus sp. MC-1]
          Length = 768

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L   F ++  +  ++ E L  IE + + +A ++ + F
Sbjct: 607 LAAHFTSLDALMAATVEDLVGIEDVGEVVARRVVHFF 643


>gi|34763058|ref|ZP_00144032.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887284|gb|EAA24381.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 286

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IG  +   +   + +++ I   + + L +I+GI   +   + N
Sbjct: 190 DGIPGVTKIGEKKALAIFSQYDSLEKIYE-NIDNLKNIDGIGPSLIKNLVN 239


>gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 923

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I  ++ + L        K++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNII-ANADQLKG------KLSQNIKDNL 228


>gi|301301358|ref|ZP_07207500.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300214787|gb|ADJ79203.1| Holliday junction ATP-dependent DNA helicase ruvA [Lactobacillus
           salivarius CECT 5713]
 gi|300851018|gb|EFK78760.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 201

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPET--LASIEGISKKIACKI 603
           K  +  L +++GIGP     +L +    + +  +  S +   L    GI KK A +I
Sbjct: 68  KQLFLKLLDVSGIGPKSALAILAN-DDNRGLINAINSDDDGYLTKFPGIGKKTAKQI 123


>gi|295092660|emb|CBK78767.1| helicase, putative, RecD/TraA family [Clostridium cf.
           saccharolyticum K10]
          Length = 785

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ F T    I    PE LA I+GIS+K+A  I
Sbjct: 90  IKGIGAALASRIVKKFKTDTFRIMEEEPERLAEIKGISEKMAMAI 134


>gi|294628456|ref|ZP_06707016.1| 5'-3' exonuclease [Streptomyces sp. e14]
 gi|292831789|gb|EFF90138.1| 5'-3' exonuclease [Streptomyces sp. e14]
          Length = 306

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + G+G      LL  FG +  I  +
Sbjct: 202 LPGVPGVGEKTAAKLLAEFGDLAGILAA 229


>gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024]
 gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024]
          Length = 923

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I  ++ + L        K++  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNII-ANADQLKG------KLSQNIKDNL 228


>gi|296137136|ref|YP_003644378.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12]
 gi|295797258|gb|ADG32048.1| Holliday junction DNA helicase RuvA [Thiomonas intermedia K12]
          Length = 190

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 17/84 (20%)

Query: 529 FIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMIS 582
            +    +R++AH    FA        +++ +  L +I+GIGP     +L   G +V  I+
Sbjct: 47  LLIHTVIREDAHLLYGFATAG-----ERSTFRELLKISGIGPRIALAVLS--GLSVSEIA 99

Query: 583 RS-SPET---LASIEGISKKIACK 602
           ++ + +       + GI KK A +
Sbjct: 100 QAVTQQDAVRFTRVPGIGKKTAER 123


>gi|323467080|gb|ADX70767.1| DNA ligase [Lactobacillus helveticus H10]
          Length = 689

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLN--MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554
           IAK    +   + + + + +   L+      I   +          AI   +K   +   
Sbjct: 481 IAKDLVHNVA-DLYHLTEDDLAQLDHFKEKSINNLLT---------AIDNSKKNSVELLI 530

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L  I+ +G    RL+ Q F  ++ I     + +ASI+ I    A  +  +F
Sbjct: 531 TGL-GIDHVGAKAARLIAQKFKNLEKIMSLGVQDIASIDTIGMATAESMTTYF 582


>gi|300711869|ref|YP_003737683.1| PHP domain protein [Halalkalicoccus jeotgali B3]
 gi|299125552|gb|ADJ15891.1| PHP domain protein [Halalkalicoccus jeotgali B3]
          Length = 580

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISR----SSPETLASIEGISKKIACKIYNHF 607
            L  + G+GP     L ++ G V+ ++     +S   +  I+G   K    I +  
Sbjct: 94  ELTSVEGVGPKTVGTLYEALG-VENLADLETVASAGEIQEIKGFGPKTEQNILSGL 148


>gi|257056192|ref|YP_003134024.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Saccharomonospora viridis DSM 43017]
 gi|256586064|gb|ACU97197.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Saccharomonospora viridis DSM 43017]
          Length = 320

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      L+  FG+++ +  +
Sbjct: 208 LPGVPGIGEKTAAKLVTRFGSLEALVAA 235


>gi|255569086|ref|XP_002525512.1| conserved hypothetical protein [Ricinus communis]
 gi|223535191|gb|EEF36870.1| conserved hypothetical protein [Ricinus communis]
          Length = 248

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I GI       L Q+ G+++ I+++S E +     +S + A  I   F 
Sbjct: 188 SIPGIDNHDANALNQAIGSIEAIAKASKERILETTDLSAEKADTITRFFR 237


>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
          Length = 891

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            + GIG      L+Q FG++  +  
Sbjct: 189 GVPGIGEKTATKLIQEFGSLDALLE 213


>gi|17228820|ref|NP_485368.1| DNA processing protein [Nostoc sp. PCC 7120]
 gi|17130672|dbj|BAB73282.1| DNA processing protein [Nostoc sp. PCC 7120]
          Length = 372

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH---FHKNT 611
           +I+G+GP+  R L Q FGT+ +   +    L  +EG   +   K+       H   
Sbjct: 13  QISGVGPVLLRRLQQHFGTLAVAWNAPQAQLGEVEGFGLQTLEKVVKQRSRLHPQQ 68


>gi|306822684|ref|ZP_07456062.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309800934|ref|ZP_07695066.1| comEA protein [Bifidobacterium dentium JCVIHMP022]
 gi|304554229|gb|EFM42138.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308222470|gb|EFO78750.1| comEA protein [Bifidobacterium dentium JCVIHMP022]
          Length = 177

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 9/50 (18%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGI-SKKIAC 601
            L  + GIGP+  + +L     FG    +     + L  ++GI SK +A 
Sbjct: 125 KLQTLKGIGPVTAQRILDYRMQFGRFDNV-----DQLMDVKGIGSKTLAK 169


>gi|303249145|ref|ZP_07335385.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans
           JJ]
 gi|302489470|gb|EFL49417.1| Holliday junction DNA helicase RuvA [Desulfovibrio fructosovorans
           JJ]
          Length = 202

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMI-SRSSPETLASIEGISKKIACKIY 604
           +  +  L  I  +GP     +L  +    +  I + +  + L  + GI KK A +I 
Sbjct: 70  RETFRILIGITKLGPKTALAILSRYTADDLARIVATADLDALTQVSGIGKKSAQRIL 126


>gi|300309762|ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300072547|gb|ADJ61946.1| Holliday junction DNA resolvase, DNA-binding subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I+G+G      +L   G +V  ++++ + +    L  + GI KK A +
Sbjct: 69  RNTFKELIKISGVGARTALSILS--GMSVADLAQAVTLQEAGRLTRVPGIGKKTAER 123


>gi|161507068|ref|YP_001577022.1| DNA ligase [Lactobacillus helveticus DPC 4571]
 gi|190359262|sp|A8YTZ3|DNLJ_LACH4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|160348057|gb|ABX26731.1| DNA ligase [Lactobacillus helveticus DPC 4571]
          Length = 668

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLN--MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554
           IAK    +   + + + + +   L+      I   +          AI   +K   +   
Sbjct: 460 IAKDLVHNVA-DLYHLTEDDLAQLDHFKEKSINNLLT---------AIDNSKKNSVELLI 509

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L  I+ +G    RL+ Q F  ++ I     + +ASI+ I    A  +  +F
Sbjct: 510 TGL-GIDHVGAKAARLIAQKFKNLEKIMSLGVQDIASIDTIGMTTAESMTTYF 561


>gi|149184792|ref|ZP_01863110.1| hypothetical protein ED21_28778 [Erythrobacter sp. SD-21]
 gi|148832112|gb|EDL50545.1| hypothetical protein ED21_28778 [Erythrobacter sp. SD-21]
          Length = 232

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           + L+  FG+   +  + P  LA ++G+ +  A  ++ 
Sbjct: 56  KRLIAQFGSFSSVMNAPPGALAQVKGMGEASAAALHA 92


>gi|148560082|ref|YP_001259197.1| DNA repair protein RadC [Brucella ovis ATCC 25840]
 gi|254706546|ref|ZP_05168374.1| DNA repair protein RadC [Brucella pinnipedialis M163/99/10]
 gi|256160029|ref|ZP_05457727.1| DNA repair protein RadC [Brucella ceti M490/95/1]
 gi|256255238|ref|ZP_05460774.1| DNA repair protein RadC [Brucella ceti B1/94]
 gi|261222434|ref|ZP_05936715.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314006|ref|ZP_05953203.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|265998402|ref|ZP_06110959.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|148371339|gb|ABQ61318.1| DNA repair protein RadC [Brucella ovis ATCC 25840]
 gi|260921018|gb|EEX87671.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261303032|gb|EEY06529.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|262553009|gb|EEZ08860.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 246

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + LL  FG++  +  +    +A I G    +A ++ 
Sbjct: 73  KALLNRFGSIAEVLAAPENLIAEIPGAGPTVALELK 108


>gi|219847262|ref|YP_002461695.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Chloroflexus aggregans DSM 9485]
 gi|219541521|gb|ACL23259.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Chloroflexus aggregans DSM 9485]
          Length = 205

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKI 603
           +A  S L+E+ G+G      ++           +     S + L  + GI +K+  +I
Sbjct: 147 RATASDLEELPGVGKTLAERIIAR-------RETQGPYRSVDELREVSGIGEKLFNQI 197


>gi|222099496|ref|YP_002534064.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359]
 gi|61657322|emb|CAI44241.1| holliday junction DNA helicase [Thermotoga neapolitana]
 gi|221571886|gb|ACM22698.1| Holliday junction DNA helicase [Thermotoga neapolitana DSM 4359]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 9/62 (14%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGT------VKMISRSSPETLASIEGISKKIAC 601
           R+KK  +  L +++ +GP     +L    +      + MI+    E L+ I GIS+K A 
Sbjct: 69  RKKKDLFLSLMKVSRLGPKTALKILS---SEDVDTLISMINSQDVEGLSKIPGISRKTAE 125

Query: 602 KI 603
           +I
Sbjct: 126 RI 127


>gi|325845724|ref|ZP_08169004.1| comEA protein [Turicibacter sp. HGF1]
 gi|325488238|gb|EGC90667.1| comEA protein [Turicibacter sp. HGF1]
          Length = 192

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L  + GIG  +   ++Q    +G  +     S E L ++ GI +K    + +  
Sbjct: 141 ELKNLPGIGKTKAAAIIQYRMDYGPFQ-----SIEELKNVTGIGEKTFESLEDFI 190


>gi|313896259|ref|ZP_07829812.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975058|gb|EFR40520.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 672

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYNHF 607
            I GIG      L+Q F +V  ++ +     E + ++  + +  A  +   F
Sbjct: 517 GIAGIGRAAAISLMQEFPSVDALAEAARGDAEKILAVPDMGEVSARSLAEFF 568


>gi|315586830|gb|ADU41211.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori 35A]
          Length = 183

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|297563164|ref|YP_003682138.1| excinuclease ABC C subunit domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847612|gb|ADH69632.1| Excinuclease ABC C subunit domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 269

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 11  GVYQMLDIAGRVLYVG----KAYNLQKRIKSYMHSNNHTHRITHM--ISQINNIR 59
           GVY   D  G  +YVG    K   L  R++ ++ +         +  + ++  I 
Sbjct: 53  GVYAFYDYDGEPIYVGQTNEK---LSSRVRRHLTNQRTDAVAMRVLDVLEVAEIE 104


>gi|281358582|ref|ZP_06245061.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548]
 gi|281314930|gb|EFA98964.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548]
          Length = 626

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  IG    +++         + R S E L++I GI  + A  + +  
Sbjct: 465 NIPNIGANVAKVIFSH-TDFAGLRRMSEEELSAIPGIGPERAKALVSEL 512


>gi|119503165|ref|ZP_01625249.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
 gi|119460811|gb|EAW41902.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
          Length = 673

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 550 KKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           K    S       I  +G    R L + FG +  +  ++ E L  +E +   +A  +   
Sbjct: 506 KNTTLSRFIYALGIREVGETTARQLAEYFGALAPLFTATDEQLQEVEDVGPIVAGHLQRF 565

Query: 607 F 607
           F
Sbjct: 566 F 566


>gi|90962101|ref|YP_536017.1| Holliday junction DNA helicase RuvA [Lactobacillus salivarius
           UCC118]
 gi|227891123|ref|ZP_04008928.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC
           11741]
 gi|123391344|sp|Q1WT17|RUVA_LACS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90821295|gb|ABD99934.1| Holliday junction DNA helicase [Lactobacillus salivarius UCC118]
 gi|227866997|gb|EEJ74418.1| Holliday junction DNA helicase [Lactobacillus salivarius ATCC
           11741]
          Length = 201

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPET--LASIEGISKKIACKI 603
           K  +  L +++GIGP     +L +    + +  +  S +   L    GI KK A +I
Sbjct: 68  KQLFLKLLDVSGIGPKSALAILAN-DDNRGLINAINSDDDGYLTKFPGIGKKTAKQI 123


>gi|17987001|ref|NP_539635.1| DNA repair protein RadC [Brucella melitensis bv. 1 str. 16M]
 gi|23502159|ref|NP_698286.1| DNA repair protein RadC [Brucella suis 1330]
 gi|62290189|ref|YP_221982.1| DNA repair protein RadC [Brucella abortus bv. 1 str. 9-941]
 gi|82700110|ref|YP_414684.1| DNA repair protein RadC [Brucella melitensis biovar Abortus 2308]
 gi|161619234|ref|YP_001593121.1| DNA repair protein RadC [Brucella canis ATCC 23365]
 gi|189024423|ref|YP_001935191.1| DNA repair protein RadC [Brucella abortus S19]
 gi|225627749|ref|ZP_03785786.1| DNA repair protein RadC [Brucella ceti str. Cudo]
 gi|237815696|ref|ZP_04594693.1| DNA repair protein RadC [Brucella abortus str. 2308 A]
 gi|254689493|ref|ZP_05152747.1| DNA repair protein RadC [Brucella abortus bv. 6 str. 870]
 gi|254693980|ref|ZP_05155808.1| DNA repair protein RadC [Brucella abortus bv. 3 str. Tulya]
 gi|254697631|ref|ZP_05159459.1| DNA repair protein RadC [Brucella abortus bv. 2 str. 86/8/59]
 gi|254702017|ref|ZP_05163845.1| DNA repair protein RadC [Brucella suis bv. 5 str. 513]
 gi|254704558|ref|ZP_05166386.1| DNA repair protein RadC [Brucella suis bv. 3 str. 686]
 gi|254710344|ref|ZP_05172155.1| DNA repair protein RadC [Brucella pinnipedialis B2/94]
 gi|254714340|ref|ZP_05176151.1| DNA repair protein RadC [Brucella ceti M644/93/1]
 gi|254717239|ref|ZP_05179050.1| DNA repair protein RadC [Brucella ceti M13/05/1]
 gi|254730521|ref|ZP_05189099.1| DNA repair protein RadC [Brucella abortus bv. 4 str. 292]
 gi|256031838|ref|ZP_05445452.1| DNA repair protein RadC [Brucella pinnipedialis M292/94/1]
 gi|256044923|ref|ZP_05447826.1| DNA repair protein RadC [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061358|ref|ZP_05451502.1| DNA repair protein RadC [Brucella neotomae 5K33]
 gi|256113838|ref|ZP_05454631.1| DNA repair protein RadC [Brucella melitensis bv. 3 str. Ether]
 gi|256257741|ref|ZP_05463277.1| DNA repair protein RadC [Brucella abortus bv. 9 str. C68]
 gi|256369702|ref|YP_003107212.1| DNA repair protein RadC [Brucella microti CCM 4915]
 gi|260168972|ref|ZP_05755783.1| DNA repair protein RadC [Brucella sp. F5/99]
 gi|260546732|ref|ZP_05822471.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260565477|ref|ZP_05835961.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|260566199|ref|ZP_05836669.1| DNA repair protein RadC [Brucella suis bv. 4 str. 40]
 gi|260755015|ref|ZP_05867363.1| DNA repair protein RadC [Brucella abortus bv. 6 str. 870]
 gi|260758231|ref|ZP_05870579.1| DNA repair protein RadC [Brucella abortus bv. 4 str. 292]
 gi|260762058|ref|ZP_05874401.1| DNA repair protein RadC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884026|ref|ZP_05895640.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261214271|ref|ZP_05928552.1| DNA repair protein RadC [Brucella abortus bv. 3 str. Tulya]
 gi|261219056|ref|ZP_05933337.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261317907|ref|ZP_05957104.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261322116|ref|ZP_05961313.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261325359|ref|ZP_05964556.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261752583|ref|ZP_05996292.1| DNA repair protein RadC [Brucella suis bv. 5 str. 513]
 gi|261755242|ref|ZP_05998951.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261758465|ref|ZP_06002174.1| DNA repair protein RadC [Brucella sp. F5/99]
 gi|265988936|ref|ZP_06101493.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265991349|ref|ZP_06103906.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265995186|ref|ZP_06107743.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|294852618|ref|ZP_06793291.1| DNA repair protein radC [Brucella sp. NVSL 07-0026]
 gi|297248579|ref|ZP_06932297.1| DNA repair protein radC [Brucella abortus bv. 5 str. B3196]
 gi|306840253|ref|ZP_07473027.1| DNA repair protein RadC [Brucella sp. BO2]
 gi|306844186|ref|ZP_07476779.1| DNA repair protein RadC [Brucella sp. BO1]
 gi|54039000|sp|P65956|Y1283_BRUSU RecName: Full=UPF0758 protein BR1283
 gi|54041782|sp|P65955|Y718_BRUME RecName: Full=UPF0758 protein BMEI0718
 gi|73913733|sp|Q57CL3|Y1284_BRUAB RecName: Full=UPF0758 protein BruAb1_1284
 gi|123547434|sp|Q2YRF9|Y1301_BRUA2 RecName: Full=UPF0758 protein BAB1_1301
 gi|238687216|sp|A9M5U5|Y1306_BRUC2 RecName: Full=UPF0758 protein BCAN_A1306
 gi|238689385|sp|B2S6C0|Y1214_BRUA1 RecName: Full=UPF0758 protein BAbS19_I12140
 gi|17982652|gb|AAL51899.1| DNA repair protein radc homolog [Brucella melitensis bv. 1 str.
           16M]
 gi|23348123|gb|AAN30201.1| DNA repair protein RadC [Brucella suis 1330]
 gi|62196321|gb|AAX74621.1| RadC, DNA repair protein RadC [Brucella abortus bv. 1 str. 9-941]
 gi|82616211|emb|CAJ11257.1| DNA repair protein RadC [Brucella melitensis biovar Abortus 2308]
 gi|161336045|gb|ABX62350.1| DNA repair protein RadC [Brucella canis ATCC 23365]
 gi|189019995|gb|ACD72717.1| DNA repair protein RadC [Brucella abortus S19]
 gi|225617754|gb|EEH14799.1| DNA repair protein RadC [Brucella ceti str. Cudo]
 gi|237788994|gb|EEP63205.1| DNA repair protein RadC [Brucella abortus str. 2308 A]
 gi|255999864|gb|ACU48263.1| DNA repair protein RadC [Brucella microti CCM 4915]
 gi|260095782|gb|EEW79659.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260151545|gb|EEW86639.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|260155717|gb|EEW90797.1| DNA repair protein RadC [Brucella suis bv. 4 str. 40]
 gi|260668549|gb|EEX55489.1| DNA repair protein RadC [Brucella abortus bv. 4 str. 292]
 gi|260672490|gb|EEX59311.1| DNA repair protein RadC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675123|gb|EEX61944.1| DNA repair protein RadC [Brucella abortus bv. 6 str. 870]
 gi|260873554|gb|EEX80623.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260915878|gb|EEX82739.1| DNA repair protein RadC [Brucella abortus bv. 3 str. Tulya]
 gi|260924145|gb|EEX90713.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294806|gb|EEX98302.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261297130|gb|EEY00627.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261301339|gb|EEY04836.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261738449|gb|EEY26445.1| DNA repair protein RadC [Brucella sp. F5/99]
 gi|261742336|gb|EEY30262.1| DNA repair protein RadC [Brucella suis bv. 5 str. 513]
 gi|261744995|gb|EEY32921.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262766299|gb|EEZ12088.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263002133|gb|EEZ14708.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|264661133|gb|EEZ31394.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294821207|gb|EFG38206.1| DNA repair protein radC [Brucella sp. NVSL 07-0026]
 gi|297175748|gb|EFH35095.1| DNA repair protein radC [Brucella abortus bv. 5 str. B3196]
 gi|306275461|gb|EFM57198.1| DNA repair protein RadC [Brucella sp. BO1]
 gi|306289780|gb|EFM60962.1| DNA repair protein RadC [Brucella sp. BO2]
          Length = 249

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + LL  FG++  +  +    +A I G    +A ++ 
Sbjct: 73  KALLNRFGSIAEVLAAPENLIAEIPGAGPTVALELK 108


>gi|283778801|ref|YP_003369556.1| PHP domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283437254|gb|ADB15696.1| PHP domain protein [Pirellula staleyi DSM 6068]
          Length = 578

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 548 RRKKAAYSPL--DEINGIGPLRKRLLLQSFG--TVKMISRS 584
            R +   S L    I G+GP +   L +  G  +++ +  +
Sbjct: 84  LRSQVPESVLALLRIPGVGPKKAAALYKELGVKSLEELKSA 124


>gi|254719330|ref|ZP_05181141.1| DNA repair protein RadC [Brucella sp. 83/13]
 gi|265984331|ref|ZP_06097066.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306839105|ref|ZP_07471922.1| DNA repair protein RadC [Brucella sp. NF 2653]
 gi|264662923|gb|EEZ33184.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306405652|gb|EFM61914.1| DNA repair protein RadC [Brucella sp. NF 2653]
          Length = 249

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + LL  FG++  +  +    +A I G    +A ++ 
Sbjct: 73  KALLNRFGSIAEVLAAPENLIAEIPGAGPTVALELK 108


>gi|253996889|ref|YP_003048953.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Methylotenera mobilis JLW8]
 gi|253983568|gb|ACT48426.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Methylotenera mobilis JLW8]
          Length = 210

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L+ +NGIGP++ + ++        F +V        + L  + G+       +  
Sbjct: 27  ATQAELESLNGIGPVKAQAIIDYRKKNGNFKSV--------DDLEKVNGVGAATLQSVRK 78


>gi|227520123|ref|ZP_03950172.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
 gi|227072467|gb|EEI10430.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
          Length = 428

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ +   + + +  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGVYE-NIDEMKK 229


>gi|163843546|ref|YP_001627950.1| DNA repair protein RadC [Brucella suis ATCC 23445]
 gi|163674269|gb|ABY38380.1| DNA repair protein RadC [Brucella suis ATCC 23445]
          Length = 249

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + LL  FG++  +  +    +A I G    +A ++ 
Sbjct: 73  KALLNRFGSIAEVLAAPENLIAEIPGAGPTVALELK 108


>gi|312128766|ref|YP_003993640.1| helicase, recd/traa family [Caldicellulosiruptor hydrothermalis
           108]
 gi|311778785|gb|ADQ08271.1| helicase, RecD/TraA family [Caldicellulosiruptor hydrothermalis
           108]
          Length = 741

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I GIG    + ++ +FG     I +  PE L SI G++ +   +I N F
Sbjct: 89  IKGIGQKTAKKIVDTFGDDTARILQEEPEKLLSIRGMTPEKVERIRNMF 137


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 214 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 245


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 214 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 245


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 214 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 245


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 214 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 245


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 214 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 245


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 214 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 245


>gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|256112628|ref|ZP_05453549.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|265994069|ref|ZP_06106626.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765050|gb|EEZ10971.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 281

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13]
 gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
          Length = 985

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 214 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 245


>gi|228861158|ref|YP_002854181.1| endonuclease II [Enterobacteria phage RB51]
 gi|228861540|ref|YP_002854561.1| endonuclease II [Enterobacteria phage RB14]
 gi|330858745|ref|YP_004415120.1| putative endonuclease II [Shigella phage Shfl2]
 gi|227438556|gb|ACP30869.1| endonuclease II [Enterobacteria phage RB14]
 gi|227438832|gb|ACP31144.1| endonuclease II [Enterobacteria phage RB51]
 gi|291290449|dbj|BAI83244.1| DenA endonuclease II [Enterobacteria phage AR1]
 gi|327397679|gb|AEA73181.1| putative endonuclease II [Shigella phage Shfl2]
          Length = 136

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 22/93 (23%)

Query: 19  AGRVLYVGKAYNLQKRIKSY---------MHSNNHTHRITHMISQINNIRFT-------- 61
              ++Y+GK  NL+KRI  Y            +  +  I   + + + + F         
Sbjct: 42  NDELVYIGKTKNLRKRINYYRTAINRKDKTSDSTKSALIHAALKEGSKVEFYARQCFNLS 101

Query: 62  ---VTCTEVEALL-LEANM-IKRLKPRFNILLR 89
                 T   A + LE  + IK   P +NI  +
Sbjct: 102 MTNELGTMTIATIDLEEPLFIKLFNPPWNIQHK 134


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 214 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 245


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
          Length = 979

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|47216859|emb|CAG11666.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 433

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 15/27 (55%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ ++ E L ++ G+ + +A  I  +
Sbjct: 43  NINAATEEELMTLPGVGRAVAQNIVEY 69


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
           polymerase, family A:5'-3' exonuclease:3'-5'
           exonuclease:Hel [Brucella melitensis biovar Abortus
           2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
          Length = 978

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ FG +   ++R+S   +  
Sbjct: 198 GIPGIGPKTAAQLLEEFGDLDTLLARAS--EIKQ 229


>gi|84500637|ref|ZP_00998886.1| DNA repair protein [Oceanicola batsensis HTCC2597]
 gi|84391590|gb|EAQ03922.1| DNA repair protein [Oceanicola batsensis HTCC2597]
          Length = 251

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           R LL  FG+   +  + P  L  I+G+ + +
Sbjct: 75  RALLDRFGSFNRVISAPPADLMRIDGVGRSL 105


>gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
 gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
          Length = 907

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRS 584
           D I G   IGP     LLQ +GT+  +  +
Sbjct: 186 DNIPGAKGIGPKTAARLLQEYGTLDAVLAA 215


>gi|330502846|ref|YP_004379715.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
 gi|328917132|gb|AEB57963.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
          Length = 786

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  +++ +  + P+ L  +  I  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLERVREALPQVLTYLPDIGLEVAHEIHSFF 583


>gi|310644233|ref|YP_003948992.1| DNA-binding protein [Paenibacillus polymyxa SC2]
 gi|309249184|gb|ADO58751.1| DNA-binding protein [Paenibacillus polymyxa SC2]
          Length = 358

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L++ FG    +  ++ E L  ++GI +  A  I     +
Sbjct: 308 NLVERFGRFPHVMTATIEELDEVDGIGEVRARTIKEGLKR 347


>gi|302818496|ref|XP_002990921.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
 gi|300141252|gb|EFJ07965.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
          Length = 363

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            I GIG      L+  FG+V+ + +
Sbjct: 247 GIPGIGEKTAIELITKFGSVENLLQ 271


>gi|326201673|ref|ZP_08191544.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium papyrosolvens DSM 2782]
 gi|325988273|gb|EGD49098.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium papyrosolvens DSM 2782]
          Length = 251

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           KA+ + L+ +  +GP   + +++     G+      +    +  I GI +K   +I N+ 
Sbjct: 194 KASQAELEGLPNVGPSTAKAIIEYREQKGSF-----AKLTDIMKITGIKQKTFDRIKNYI 248


>gi|332295726|ref|YP_004437649.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Thermodesulfobium narugense DSM 14796]
 gi|332178829|gb|AEE14518.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Thermodesulfobium narugense DSM 14796]
          Length = 194

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L +I+G+G      ++ SF T    +  +      +L SI G+ +K A +I+    
Sbjct: 75  KLLKIHGVGVKLALQIISSFKTNPTLILDLKNDHISSLKSIPGVGEKTAKRIFEELK 131


>gi|319783917|ref|YP_004143393.1| DNA repair protein RadC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169805|gb|ADV13343.1| DNA repair protein RadC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 253

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + LL  FGT+  +  +    L  ++GI   +A
Sbjct: 77  KALLARFGTLAEVLGAPVGLLQEVKGIGPAVA 108


>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
 gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
          Length = 921

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +GP     L+Q FG+++ +   + + L 
Sbjct: 190 DNIPGCPGVGPKTATTLIQRFGSIENLLEHT-DELK 224


>gi|253583728|ref|ZP_04860926.1| DNA repair protein RadC [Fusobacterium varium ATCC 27725]
 gi|251834300|gb|EES62863.1| DNA repair protein RadC [Fusobacterium varium ATCC 27725]
          Length = 229

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 26/78 (33%)

Query: 544 THRKRRK-KAAYS---------PLD-----EINGIGPLRK------RLLLQSFGTVKMIS 582
            HRKR K K   S          L+      I      RK      + LL+ FG+   I 
Sbjct: 8   GHRKRLKEKYMKSGYDAFHEYEILEILLTYSIP-----RKDVKPIAKKLLEVFGSTGKIF 62

Query: 583 RSSPETLASIEGISKKIA 600
            +  + L  +EGI +  A
Sbjct: 63  GADIKELIKVEGIGESSA 80


>gi|114768813|ref|ZP_01446439.1| DNA ligase [alpha proteobacterium HTCC2255]
 gi|114549730|gb|EAU52611.1| DNA ligase [alpha proteobacterium HTCC2255]
          Length = 711

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRS----------SPETLASIEGISKKIACKIYNHFH 608
            I  +G     LL + + +   + +S          S   L SI+G+ + +A  +   F+
Sbjct: 542 GIRHVGETSATLLSKHYKSFDNLKKSMNEAKSLEGSSWSDLMSIDGVGEILAKAVVQIFN 601

Query: 609 K 609
            
Sbjct: 602 N 602


>gi|253751831|ref|YP_003024972.1| DNA repair protein RadC [Streptococcus suis SC84]
 gi|253753654|ref|YP_003026795.1| DNA repair protein RadC [Streptococcus suis P1/7]
 gi|253755465|ref|YP_003028605.1| DNA repair protein RadC [Streptococcus suis BM407]
 gi|18253151|dbj|BAB83962.1| putative DNA repair protein [Streptococcus suis]
 gi|251816120|emb|CAZ51743.1| DNA repair protein RadC [Streptococcus suis SC84]
 gi|251817929|emb|CAZ55707.1| DNA repair protein RadC [Streptococcus suis BM407]
 gi|251819900|emb|CAR45944.1| DNA repair protein RadC [Streptococcus suis P1/7]
 gi|292558401|gb|ADE31402.1| putative DNA repair protein [Streptococcus suis GZ1]
 gi|319758183|gb|ADV70125.1| DNA repair protein RadC [Streptococcus suis JS14]
          Length = 226

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL    ++  +   S E L S+ GI +  A +I  
Sbjct: 50  KLLNRLESLAALRELSIEELQSLTGIGRVKAIEIKA 85


>gi|189499438|ref|YP_001958908.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
 gi|254781285|sp|B3EM49|DNLJ_CHLPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|189494879|gb|ACE03427.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
          Length = 684

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    R L  ++ T+ M+ ++S E L+ +  +   IA  ++  F K ++  
Sbjct: 526 GIRHVGIATARELAGAYPTLDMLCKASVEALSDVTDVGPVIAESVHAFFRKPSATA 581


>gi|325929428|ref|ZP_08190556.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas perforans 91-118]
 gi|325540203|gb|EGD11817.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas perforans 91-118]
          Length = 328

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IG     +LL  FG++  +     + +
Sbjct: 202 DNIPGVTGIGAKSAAVLLAHFGSLDALLE-RIDEI 235


>gi|325914281|ref|ZP_08176631.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325539536|gb|EGD11182.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 328

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IG     +LL  FG++  +     + +
Sbjct: 202 DNIPGVTGIGAKSAAVLLAHFGSLDALLE-RIDEI 235


>gi|313200117|ref|YP_004038775.1| DNA repair protein radc [Methylovorus sp. MP688]
 gi|312439433|gb|ADQ83539.1| DNA repair protein RadC [Methylovorus sp. MP688]
          Length = 224

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS 596
           R LLQ FG++  I  +S E ++ I+G+ 
Sbjct: 48  RELLQVFGSLNGIFAASLEQISRIKGMG 75


>gi|306827641|ref|ZP_07460921.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782]
 gi|304430204|gb|EFM33233.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782]
          Length = 652

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L+  G +  +  +  E +A I+G+   IA  +  +F + T+
Sbjct: 502 GIRHIGSKVSRLILEVCGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTA 555


>gi|294626134|ref|ZP_06704741.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665198|ref|ZP_06730497.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292599583|gb|EFF43713.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605021|gb|EFF48373.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 328

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IG     +LL  FG++  +     + +
Sbjct: 202 DNIPGVTGIGAKSAAVLLAHFGSLDALLE-RIDEI 235


>gi|289670887|ref|ZP_06491962.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 328

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IG     +LL  FG++  +     + +
Sbjct: 202 DNIPGVTGIGAKSAAVLLAHFGSLDALLE-RIDEI 235


>gi|253998052|ref|YP_003050115.1| DNA repair protein RadC [Methylovorus sp. SIP3-4]
 gi|253984731|gb|ACT49588.1| DNA repair protein RadC [Methylovorus sp. SIP3-4]
          Length = 224

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS 596
           R LLQ FG++  I  +S E ++ I+G+ 
Sbjct: 48  RELLQVFGSLNGIFAASLEQISRIKGMG 75


>gi|254166516|ref|ZP_04873370.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
 gi|289596078|ref|YP_003482774.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197624126|gb|EDY36687.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
           boonei T469]
 gi|289533865|gb|ADD08212.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 694

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           F +++ + R++  TL  I GI +K+A +I  
Sbjct: 661 FDSIEKLKRANVSTLIIIPGIGRKLAEEILK 691


>gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264]
 gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E +  + G       K+     +N    
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEAVY----ENIDQVSG------KKLKEKLEENKEQA 237


>gi|166710776|ref|ZP_02241983.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 328

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IG     +LL  FG++  +     + +
Sbjct: 202 DNIPGVTGIGAKSAAVLLAHFGSLDALLE-RIDEI 235


>gi|126660894|ref|ZP_01731986.1| Helicase RecD/TraA [Cyanothece sp. CCY0110]
 gi|126617848|gb|EAZ88625.1| Helicase RecD/TraA [Cyanothece sp. CCY0110]
          Length = 763

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPETLASIEGISKKIACKIYN 605
           K   S L  I G+GP+  + ++  F   T+++I     E L  + GI KK    I +
Sbjct: 115 KYLGSGL--IRGVGPVTAKRIVAYFQLETLEIIEN-QIERLVEVPGIGKKRVKMIQD 168


>gi|110597833|ref|ZP_01386116.1| Helix-hairpin-helix motif [Chlorobium ferrooxidans DSM 13031]
 gi|110340558|gb|EAT59041.1| Helix-hairpin-helix motif [Chlorobium ferrooxidans DSM 13031]
          Length = 171

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 24/96 (25%)

Query: 530 IQRL----RDE------AHRFA--------ITTHRKRRKKAAYSPLDEINGIGPLRKRLL 571
           +Q +    RDE      AHR A        I  +     KA  + L +I+GIGP+    L
Sbjct: 79  LQEVTDAERDESSEKPAAHRSAGKKTFSGTIAFN-----KAGKAELQKISGIGPVMAGRL 133

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +  F   K    +  +    ++GI KK    +  HF
Sbjct: 134 IA-FRASKGGKVTQFQDFLDVKGIGKKKLEVLKKHF 168


>gi|21241682|ref|NP_641264.1| exodeoxyribonuclease IX [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107047|gb|AAM35800.1| exodeoxyribonuclease IX [Xanthomonas axonopodis pv. citri str. 306]
          Length = 328

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IG     +LL  FG++  +     + +
Sbjct: 202 DNIPGVTGIGAKSAAVLLAHFGSLDALLE-RIDEI 235


>gi|78046504|ref|YP_362679.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78034934|emb|CAJ22579.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 328

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IG     +LL  FG++  +     + +
Sbjct: 202 DNIPGVTGIGAKSAAVLLAHFGSLDALLE-RIDEI 235


>gi|58583261|ref|YP_202277.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625095|ref|YP_452467.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575436|ref|YP_001912365.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427855|gb|AAW76892.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369035|dbj|BAE70193.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519888|gb|ACD57833.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 328

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IG     +LL  FG++  +     + +
Sbjct: 202 DNIPGVTGIGAKSAAVLLAHFGSLDALLE-RIDEI 235


>gi|223932335|ref|ZP_03624338.1| DNA repair protein RadC [Streptococcus suis 89/1591]
 gi|302023854|ref|ZP_07249065.1| DNA repair protein RadC [Streptococcus suis 05HAS68]
 gi|28189065|dbj|BAC56216.1| putative DNA repair protein [Streptococcus suis]
 gi|223899016|gb|EEF65374.1| DNA repair protein RadC [Streptococcus suis 89/1591]
          Length = 226

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LL    ++  +   S E L S+ GI +  A +I  
Sbjct: 50  KLLNRLESLAALRELSIEELQSLTGIGRVKAIEIKA 85


>gi|194337540|ref|YP_002019334.1| Helix-hairpin-helix DNA-binding class 1 [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310017|gb|ACF44717.1| Helix-hairpin-helix DNA-binding class 1 [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 172

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           KA+   L +I GIGP+    L+  F   K       +    ++GI KK    +  +F
Sbjct: 114 KASSRELQKIPGIGPVMAERLIA-FRKTKGGKVQQFQEFLEVKGIGKKKLESLKKYF 169


>gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E L  + G       K+     +N    
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEEVY----ENLDQVSG------KKLKEKLEENKEQA 237


>gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E +  + G       K+     +N    
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEAVY----ENIDQVSG------KKLKEKLEENKEQA 251


>gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E +  + G       K+     +N    
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEAVY----ENIDQVSG------KKLKEKLEENKEQA 251


>gi|255101657|ref|ZP_05330634.1| putative competence protein [Clostridium difficile QCD-63q42]
          Length = 52

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 14/54 (25%)

Query: 558 DEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D + G+G      +LQ       F ++        E + ++ GI  K    I +
Sbjct: 2   DSLPGVGEATANKILQHREENGQFSSI--------EEIKNVNGIGDKKYENIKD 47


>gi|91787665|ref|YP_548617.1| hypothetical protein Bpro_1783 [Polaromonas sp. JS666]
 gi|91696890|gb|ABE43719.1| conserved hypothetical protein [Polaromonas sp. JS666]
          Length = 181

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 12/57 (21%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQ-----SFGTVKMISRSSPETLASIEGISKKIACK 602
           KA  + LD I GIGP+  +L++       F             +A ++G+  K A K
Sbjct: 25  KATEAELDGIKGIGPVTTKLIISERKKGEFKNWDDF-------IARVKGVGDKSAAK 74


>gi|58578632|ref|YP_203352.1| orf341 [Mortierella verticillata]
 gi|57545565|gb|AAW51689.1| orf341 [Mortierella verticillata]
          Length = 341

 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 11  GVYQM--LDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITH 50
           G+Y    LD   +  YVG + NL  RI SY   +    +   
Sbjct: 76  GIYIWESLDGHNK--YVGHSINLYNRISSYFMPSILKTKARK 115


>gi|331013366|gb|EGH93422.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 787

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I  +GP   + L   FGT++ I  +    +     + +K A  + + F
Sbjct: 628 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQT--LPEKQAKSVRDFF 673



 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|330986172|gb|EGH84275.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 787

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I  +GP   + L   FGT++ I  +    +     + +K A  + + F
Sbjct: 628 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQT--LPEKQAKSVRDFF 673



 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|330889906|gb|EGH22567.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. mori str.
           301020]
          Length = 787

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I  +GP   + L   FGT++ I  +    +     + +K A  + + F
Sbjct: 628 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQT--LPEKQAKSVRDFF 673



 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|320323491|gb|EFW79576.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 787

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I  +GP   + L   FGT++ I  +    +     + +K A  + + F
Sbjct: 628 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQT--LPEKQAKSVRDFF 673



 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|304403906|ref|ZP_07385568.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Paenibacillus curdlanolyticus YK9]
 gi|304346884|gb|EFM12716.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Paenibacillus curdlanolyticus YK9]
          Length = 174

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 14/57 (24%)

Query: 556 PLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            LD + GIGP +   ++       +F +V        E L  ++GI  K+  K+  H
Sbjct: 121 ELDALPGIGPAKAAAIVADRERNGAFRSV--------EELDRVKGIGLKMVEKLREH 169


>gi|302185110|ref|ZP_07261783.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
           642]
          Length = 787

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I  +GP   + L   FGT++ I  +    +     + +K A  + + F
Sbjct: 628 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQT--LPEKQAKSVRDFF 673



 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  +++ + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171]
 gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E L  + G       K+     +N    
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEEVY----ENLDQVSG------KKLKEKLEENKEQA 237


>gi|257484998|ref|ZP_05639039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 572

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I  +GP   + L   FGT++ I  +    +     + +K A  + + F
Sbjct: 413 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQT--LPEKQAKSVRDFF 458



 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 320 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 368


>gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676]
 gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E L  + G       K+     +N    
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENLDQVSG------KKLKEKLEENKEQA 251


>gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550]
 gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E +  + G       K+     +N    
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEAVY----ENIDQVSG------KKLKEKLEENKEQA 251


>gi|227529693|ref|ZP_03959742.1| crossover junction endoribonuclease subunit A [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350359|gb|EEJ40650.1| crossover junction endoribonuclease subunit A [Lactobacillus
           vaginalis ATCC 49540]
          Length = 200

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     +L      G +  I+ +  + L    GI KK A +I
Sbjct: 68  KQLFMQLINVSGIGPKSALAILANPDHEGLINAIANNDVKYLTRFPGIGKKTASQI 123


>gi|153003861|ref|YP_001378186.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5]
 gi|166229629|sp|A7H906|RUVA_ANADF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|152027434|gb|ABS25202.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. Fw109-5]
          Length = 197

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKM--ISRS----SPETLASIEGISKKIACKIYNHFHK 609
            L ++ G+GP   + +L     +    ++++        L  + GI KK A ++     +
Sbjct: 74  ALIDVKGVGPRAAQNILS---GIDARELAQAVAGSDVARLTKVPGIGKKTAERLVVELKE 130


>gi|71737941|ref|YP_274013.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123775130|sp|Q48KR2|DNLJ_PSE14 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71558494|gb|AAZ37705.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320329466|gb|EFW85458.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 787

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I  +GP   + L   FGT++ I  +    +     + +K A  + + F
Sbjct: 628 IPSVGPGAAQKLADRFGTLEAIISADWLDMRQT--LPEKQAKSVRDFF 673



 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E L  + G       K+     +N    
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENLDQVSG------KKLKEKLEENKEQA 251


>gi|168705071|ref|ZP_02737348.1| NAD-dependent DNA ligase [Gemmata obscuriglobus UQM 2246]
          Length = 678

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 17/81 (20%)

Query: 549 RKKAAYSPLDEI------------NG-----IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           + K A + LD I             G     +G     LL++ F  + +I  ++PE LA 
Sbjct: 496 KDKKAQNLLDGIAASKGRGLARLLPGLTIYMVGEAMSDLLVEEFPDIDLIIAAAPEDLAR 555

Query: 592 IEGISKKIACKIYNHFHKNTS 612
           ++G   K A  +   F   + 
Sbjct: 556 VKGFGPKRAQFVRAFFDSESG 576


>gi|149200882|ref|ZP_01877857.1| hypothetical protein RTM1035_14692 [Roseovarius sp. TM1035]
 gi|149145215|gb|EDM33241.1| hypothetical protein RTM1035_14692 [Roseovarius sp. TM1035]
          Length = 126

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 555 SPLDEINGIGPLRKRLL-LQSFG--TVKMISRSSPETLASIEGISKKIACK 602
           S L++I G+GP     L L + G  T + +S++   TL  + GIS+  A +
Sbjct: 2   SDLNDIPGVGPA--IALGLANIGITTTEHLSKADVATLIQVRGISEARAER 50


>gi|34558784|gb|AAQ75129.1| competence protein CelA [Alvinella pompejana epibiont 6C6]
          Length = 106

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           I GIG  R   ++      +    +S + L  I GI KK    I N
Sbjct: 34  IKGIGEKRLNAIITY---REKHQVTSLDELLEISGIGKKTIENIRN 76


>gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E L  + G       K+     +N    
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENLDQVSG------KKLKEKLEENKEQA 251


>gi|21227476|ref|NP_633398.1| DNA mismatch repair protein [Methanosarcina mazei Go1]
 gi|20905849|gb|AAM31070.1| DNA mismatch repair protein [Methanosarcina mazei Go1]
          Length = 709

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIA 600
            S L E+NGIG      L++ FG+    ++ I      +L+ + G+S   A
Sbjct: 9   LSGLRELNGIGERVAGRLVEHFGSEDAALQAILEGDIASLSEVNGVSHTFA 59


>gi|62738997|pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
           Structure Of A Crenarchaeal Rada
          Length = 324

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           KK   +  +++ GI       L+++ + +++ ++ +SP+ L+   GI    A KI
Sbjct: 8   KKNIKTI-NDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKI 61


>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 912

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 10/55 (18%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           D I G+   GP      L  FG++  +  +  +    ++G   K+   +  H  +
Sbjct: 187 DNIPGVPRVGPKTAAKWLNQFGSLDALK-ARADE---VKG---KVGESLRAHLDE 234


>gi|314936043|ref|ZP_07843392.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655860|gb|EFS19603.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis
           C80]
          Length = 667

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + F T+  + + + E L +I  I  K+A  +  +     
Sbjct: 508 GIRHLGAKASQILAEKFETMDRLLKVTEEELVAIHDIGDKLAQSVVTYLDNED 560


>gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
 gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
          Length = 885

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 13/58 (22%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA-----SIEG------ISKKIACKIYN 605
            I G+G      LL  +G+V+ +       L       +E       +SKK+A  I+ 
Sbjct: 191 GIPGVGEKTALKLLHEYGSVEGVLE-HVADLKGKMKEKVEQHKDDAIMSKKLA-TIFR 246


>gi|302023934|ref|ZP_07249145.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05HAS68]
 gi|330832985|ref|YP_004401810.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
 gi|329307208|gb|AEB81624.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
          Length = 652

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L++ FG ++ ++ +  E +AS+EG+ + IA  +   F
Sbjct: 502 GIRHVGSKASKILVEKFGDLETLAFADQEAIASLEGLGQVIAKSLTTFF 550


>gi|295694808|ref|YP_003588046.1| DNA integrity scanning, DisA, linker region [Bacillus tusciae DSM
           2912]
 gi|295410410|gb|ADG04902.1| DNA integrity scanning, DisA, linker region [Bacillus tusciae DSM
           2912]
          Length = 361

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
             L++ F  +  +  ++ E L  +EGI +  A  I     +
Sbjct: 310 ENLVKQFQGLSGVMGATIEQLDDVEGIGEVRARAIREGLKR 350


>gi|228476354|ref|ZP_04061055.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119]
 gi|228269637|gb|EEK11143.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119]
          Length = 667

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + F T+  + + + E L +I  I  K+A  +  +     
Sbjct: 508 GIRHLGAKASQILAEKFETMDRLLKVTEEELVAIHDIGDKLAQSVVTYLDNED 560


>gi|227893041|ref|ZP_04010846.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
 gi|227865154|gb|EEJ72575.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
          Length = 667

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   +K   +   + L  I+ +G    RL+ Q F  ++ I     + +ASI+ I   IA
Sbjct: 496 AIDNSKKNSVELLITGL-GIDHVGAKAARLIAQKFKNLEKIMSLGVQDIASIDTIGMTIA 554

Query: 601 CKIYNHF 607
             +  +F
Sbjct: 555 ESMTTYF 561


>gi|146321044|ref|YP_001200755.1| NAD-dependent DNA ligase LigA [Streptococcus suis 98HAH33]
 gi|253751920|ref|YP_003025061.1| DNA ligase [Streptococcus suis SC84]
 gi|253753743|ref|YP_003026884.1| DNA ligase [Streptococcus suis P1/7]
 gi|253755379|ref|YP_003028519.1| DNA ligase [Streptococcus suis BM407]
 gi|166216248|sp|A4W1W6|DNLJ_STRS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145691850|gb|ABP92355.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus suis 98HAH33]
 gi|251816209|emb|CAZ51836.1| DNA ligase [Streptococcus suis SC84]
 gi|251817843|emb|CAZ55596.1| DNA ligase [Streptococcus suis BM407]
 gi|251819989|emb|CAR46142.1| DNA ligase [Streptococcus suis P1/7]
 gi|292558495|gb|ADE31496.1| NAD-dependent DNA ligase [Streptococcus suis GZ1]
 gi|319758281|gb|ADV70223.1| NAD-dependent DNA ligase LigA [Streptococcus suis JS14]
          Length = 652

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L++ FG ++ ++ +  E +AS+EG+ + IA  +   F
Sbjct: 502 GIRHVGSKASKILVEKFGDLETLAFADQEAIASLEGLGQVIAKSLTTFF 550


>gi|146318834|ref|YP_001198546.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05ZYH33]
 gi|166216250|sp|A4VVK7|DNLJ_STRSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|145689640|gb|ABP90146.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [Streptococcus suis 05ZYH33]
          Length = 652

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 28/49 (57%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L++ FG ++ ++ +  E +AS+EG+ + IA  +   F
Sbjct: 502 GIRHVGSKASKILVEKFGDLETLAFADQEAIASLEGLGQVIAKSLTTFF 550


>gi|145640257|ref|ZP_01795841.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
 gi|145274843|gb|EDK14705.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 22.4-21]
          Length = 181

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET 588
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+  + +   E 
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAHAIEREE 106

Query: 589 LAS---IEGISKKIACKIYNHFH 608
           L+    I G+ KK A ++     
Sbjct: 107 LSKLTKIPGVGKKTAERLLVELK 129


>gi|15344|emb|CAA27759.1| unnamed protein product [Enterobacteria phage T4]
          Length = 136

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 22/93 (23%)

Query: 19  AGRVLYVGKAYNLQKRIKSYMHSNNHTHRI-----THMISQI----NNIRFT-------- 61
              ++Y+GK  NL+KRI  Y  + N   +      + +I       + + F         
Sbjct: 42  NDELVYIGKTKNLRKRINYYRTAINRKDKTSDSTKSALIHSALKEGSKVEFYARQCFNLS 101

Query: 62  ---VTCTEVEALL-LEANM-IKRLKPRFNILLR 89
                 T   A + LE  + IK   P +NI  +
Sbjct: 102 MTNELGTMTIATIDLEEPLFIKLFNPPWNIQHK 134


>gi|332703467|ref|ZP_08423555.1| DNA repair protein RadC [Desulfovibrio africanus str. Walvis Bay]
 gi|332553616|gb|EGJ50660.1| DNA repair protein RadC [Desulfovibrio africanus str. Walvis Bay]
          Length = 225

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + LL +FGT++ +  +    L  + G    +A
Sbjct: 49  KELLTTFGTLRGVFEAQEAELLDVPGFGPSLA 80


>gi|307266791|ref|ZP_07548315.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918184|gb|EFN48434.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 288

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I GI   G      LL+ FG+V+ +     + L+ ++G   KI   I
Sbjct: 187 DNIPGIPNIGEKTAIKLLKEFGSVENL----LQNLSQLKG---KIKENI 228


>gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15]
 gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E +  + G       K+     +N    
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEAVY----ENIDQVSG------KKLKEKLEENKEQA 251


>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  + GIG      LL+ +G+++ +     + L  ++   + +  KI  H 
Sbjct: 194 LPGVKGIGEKTALKLLKEWGSLENL----LKNLDRVK--PENVREKIKAHL 238


>gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134]
 gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134]
          Length = 877

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E +  + G       K+     +N    
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEAVY----ENIDQVSG------KKLKEKLEENKEQA 237


>gi|167377631|ref|XP_001734475.1| Mating-type switching protein swi10 [Entamoeba dispar SAW760]
 gi|165903998|gb|EDR29371.1| Mating-type switching protein swi10, putative [Entamoeba dispar
           SAW760]
          Length = 239

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
              + L  I GI       LL  F T+K I     E L   + I  K    I+  FH
Sbjct: 152 QIINALSMIKGINSQNAYDLLMKFNTIKRIGVVDKEELKKSKNIGPKKVESIWRVFH 208


>gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
           polymerase 1
 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
          Length = 834

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  + GIG      LL+ +G+++ +     + L  ++   + +  KI  H 
Sbjct: 194 LPGVKGIGEKTALKLLKEWGSLENL----LKNLDRVK--PENVREKIKAHL 238


>gi|58697136|ref|ZP_00372568.1| DNA repair protein RadC [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225630223|ref|YP_002727014.1| DNA repair protein RadC [Wolbachia sp. wRi]
 gi|58536565|gb|EAL59914.1| DNA repair protein RadC [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592204|gb|ACN95223.1| DNA repair protein RadC [Wolbachia sp. wRi]
          Length = 224

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 24/82 (29%)

Query: 543 TTHRKR-RKKAA----YSPLD---------------EINGIGPLRKRLLLQSFGTVKMIS 582
             HRKR R+K       S LD               ++  I     + L+++FG++  + 
Sbjct: 6   KGHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPI----AKSLIENFGSLNKVF 61

Query: 583 RSSPETLASIEGISKKIACKIY 604
            +  E L +++G+S      I+
Sbjct: 62  NADLEALQNVDGVSNAAISAIF 83


>gi|58698852|ref|ZP_00373725.1| DNA repair protein RadC, truncation [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534631|gb|EAL58757.1| DNA repair protein RadC, truncation [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 225

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 24/82 (29%)

Query: 543 TTHRKR-RKKAA----YSPLD---------------EINGIGPLRKRLLLQSFGTVKMIS 582
             HRKR R+K       S LD               ++  I     + L+++FG++  + 
Sbjct: 7   KGHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPI----AKSLIENFGSLNKVF 62

Query: 583 RSSPETLASIEGISKKIACKIY 604
            +  E L +++G+S      I+
Sbjct: 63  NADLEALQNVDGVSNAAISAIF 84


>gi|323138589|ref|ZP_08073657.1| helicase, RecD/TraA family [Methylocystis sp. ATCC 49242]
 gi|322396223|gb|EFX98756.1| helicase, RecD/TraA family [Methylocystis sp. ATCC 49242]
          Length = 742

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           I GIGP+  + L+++F   V  +  + P+ L  I GI    A +I
Sbjct: 101 IRGIGPVYAKKLVKAFADKVFDVIEAQPDRLKEIAGIGPVRAERI 145


>gi|312137023|ref|YP_004004360.1| DNA mismatch repair protein muts domain protein [Methanothermus
           fervidus DSM 2088]
 gi|311224742|gb|ADP77598.1| DNA mismatch repair protein MutS domain protein [Methanothermus
           fervidus DSM 2088]
          Length = 634

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACKIYNHFHKN 610
            L  I GIG    + +++  G  +     I+    + L  + G+S+K A +I   F   
Sbjct: 6   ELKTIKGIGDKLAKKIVEEVGGEREFKKVINNLEIDELVKVRGVSEKRAIEIIKKFRGE 64


>gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 896

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 65/235 (27%), Gaps = 45/235 (19%)

Query: 390 IMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENL 449
             G               +    R  +    +     D A+     +    + +  E   
Sbjct: 18  YYGIDVTLTNSKGEPTNALFGTARMLSKFTRERMKNGDYAIFAFDRKELTKRHVAYESYK 77

Query: 450 NFHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEK 509
                  +       DV  L    G        L    +E    I++ A    R    E 
Sbjct: 78  ATREAMPDALVAQLKDVPELVEAFG-----IKFLSIAGIEAD-DIVATAAKKYRDKVDEV 131

Query: 510 FFVKKGEALVLNMRDPILYFIQRLRDEAH--RFAIT------THRKR----------RKK 551
             +   +             +Q + D+ H  RF           R++          R  
Sbjct: 132 LVITGDKD-----------LLQLVDDKVHILRFVTGLTDLDLYDREKVLSRYELEPERLH 180

Query: 552 AAYS----PLDEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           A  S      D I G   IG    + LL+ +G ++ I  ++   L+   G+ KK+
Sbjct: 181 ALLSLAGDSSDNIPGVPGIGIKTAQKLLKEYGDIEGIY-ANIRKLS--PGLRKKL 232


>gi|299743075|ref|XP_001835524.2| flap endonuclease-1 [Coprinopsis cinerea okayama7#130]
 gi|298405488|gb|EAU86309.2| flap endonuclease-1 [Coprinopsis cinerea okayama7#130]
          Length = 422

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMI 581
           L+ I G+GP     L++ FG +K +
Sbjct: 200 LEPIKGVGPKSALKLIREFGGLKEV 224


>gi|296242069|ref|YP_003649556.1| DEAD/DEAH box helicase domain-containing protein [Thermosphaera
           aggregans DSM 11486]
 gi|296094653|gb|ADG90604.1| DEAD/DEAH box helicase domain protein [Thermosphaera aggregans DSM
           11486]
          Length = 712

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  +  IG +R R+L+++   ++  ++ +  E L+S+     ++A  I     +
Sbjct: 650 ELTRVENIGRIRARILIENGIKSINDLAETPLEKLSSLPRFGPRVARSIKEWLRR 704


>gi|237716863|ref|ZP_04547344.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442846|gb|EEO48637.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 435

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLISEFGSIENLLE 220


>gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E +  + G       K+     +N    
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEAVY----ENIDQVSG------KKLKEKLEENKEQA 251


>gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
 gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E L  + G       K+     +N    
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENLDQVSG------KKLKEKLEENKEQA 251


>gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W]
 gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E +  + G       K+     +N    
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEAVY----ENIDQVSG------KKLKEKLEENKEQA 251


>gi|225848022|ref|YP_002728185.1| DNA protecting protein DprA [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643199|gb|ACN98249.1| DNA protecting protein DprA [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 356

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           I G+G +  + L++ + T   +  +    L       + IA  I
Sbjct: 13  IKGLGNVSIKKLIEHYSTATSVLNADFNDLKE--NFGENIAKLI 54


>gi|109289266|gb|ABG29119.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|109289269|gb|ABG29121.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|109289272|gb|ABG29123.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|109289275|gb|ABG29125.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 149

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
               L  + GIGP +   LL  FG+++ I     E +  I G +K+     Y   H
Sbjct: 41  TSDRLKGVAGIGPKKAVSLLNEFGSLEAIY----ENIGKISGKTKEYLENDYESAH 92


>gi|147677189|ref|YP_001211404.1| hypothetical protein PTH_0854 [Pelotomaculum thermopropionicum SI]
 gi|146273286|dbj|BAF59035.1| hypothetical membrane protein [Pelotomaculum thermopropionicum SI]
          Length = 208

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LD + GIGP   + ++Q       F T+        E L ++ GI  K    + +
Sbjct: 156 QLDTLPGIGPALAQRIIQYRESNGPFKTI--------EELKNVSGIGDKNFENLKD 203


>gi|1378036|gb|AAC44123.1| RadA [Sulfolobus solfataricus]
          Length = 324

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           KK   +  +++ GI       L+++ + +++ ++ +SP+ L+   GI    A KI
Sbjct: 8   KKNIKTI-NDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKI 61


>gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC]
 gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC]
          Length = 869

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G+   GP +   LLQ + +V+ I   + + L
Sbjct: 185 DNIPGVSGCGPKKATALLQKYHSVEGILE-NLDEL 218


>gi|20808870|ref|NP_624041.1| family X DNA polymerase IV [Thermoanaerobacter tengcongensis MB4]
 gi|20517526|gb|AAM25645.1| DNA polymerase IV (family X) [Thermoanaerobacter tengcongensis MB4]
          Length = 570

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYN 605
           +I G+GP + + L +  G  T+  +  +  E  L  + G  +K   KI  
Sbjct: 95  KIPGLGPKKIKTLYEKLGITTIGELEYACLENRLLKLPGFGEKTQKKILE 144


>gi|15897194|ref|NP_341799.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
           P2]
 gi|284174439|ref|ZP_06388408.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
           98/2]
 gi|14286170|sp|Q55075|RADA_SULSO RecName: Full=DNA repair and recombination protein radA
 gi|126030236|pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 gi|160286393|pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
 gi|160286394|pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
 gi|160286395|pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
 gi|226438154|pdb|2ZUB|A Chain A, Left Handed Rada
 gi|226438155|pdb|2ZUB|B Chain B, Left Handed Rada
 gi|226438156|pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 gi|226438157|pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
 gi|226438158|pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 gi|226438159|pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
 gi|13813387|gb|AAK40589.1| DNA repair protein radA (radA) [Sulfolobus solfataricus P2]
 gi|261601861|gb|ACX91464.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
           98/2]
          Length = 324

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           KK   +  +++ GI       L+++ + +++ ++ +SP+ L+   GI    A KI
Sbjct: 8   KKNIKTI-NDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKI 61


>gi|329770387|ref|ZP_08261769.1| hypothetical protein HMPREF0433_01533 [Gemella sanguinis M325]
 gi|328836510|gb|EGF86170.1| hypothetical protein HMPREF0433_01533 [Gemella sanguinis M325]
          Length = 214

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L +I+GIG  +   +++       F +         E +  ++GI K    KI +
Sbjct: 159 ATKEQLMKISGIGKTKAEAIIEYREKNGDFKS--------KEDITKVKGIGKSTFEKIKD 210


>gi|116253034|ref|YP_768872.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. viciae
           3841]
 gi|123261370|sp|Q1ME47|DNLJ_RHIL3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|115257682|emb|CAK08780.1| putative DNA ligase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 718

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPE----------TLASIEGISKKIACKIYNHFH 608
            I  +G    +LL +S+GT +    +  E           L +IEGI + +A  I   + 
Sbjct: 556 GIRHVGETTAKLLARSYGTYEAFETAMREAEALSGDAWNDLNAIEGIGEVVARAIVEFYK 615

Query: 609 K 609
           +
Sbjct: 616 E 616


>gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1]
 gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1]
          Length = 910

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            + G+GP     L++ FG +  +  ++ E +++   + +K+A
Sbjct: 190 GVPGVGPKTAVKLIKEFGDLDQLL-ANLEQVSA-PKLRQKLA 229


>gi|325968722|ref|YP_004244914.1| DEAD/DEAH box helicase [Vulcanisaeta moutnovskia 768-28]
 gi|323707925|gb|ADY01412.1| DEAD/DEAH box helicase domain protein [Vulcanisaeta moutnovskia
           768-28]
          Length = 768

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            + G+G  R R L  + F  +  I+ + P+ ++ I G   ++A  I  
Sbjct: 682 NLEGVGRTRARALYDAGFKDIADIANADPKAISIIRGFGDRLAHSIIE 729


>gi|319892695|ref|YP_004149570.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162391|gb|ADV05934.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 199

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  +   + R+        L    GI KK A +I
Sbjct: 69  KDMFLSLIKVTGIGPKSALAILAA-SSPNEVKRAIENENDAYLTQFPGIGKKTARQI 124


>gi|312601528|gb|ADQ90783.1| 5'-3' exonuclease [Mycoplasma hyopneumoniae 168]
          Length = 261

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           I G+G      LL+ +  +  I       L +++ I++KIA +I
Sbjct: 164 IEGLGKKTAIKLLEKYKNLDNI-------LLNLDKINQKIANQI 200


>gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
 gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
          Length = 920

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 9/52 (17%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIEGISKKIACKIYNHF 607
           L  I G+G       +  FG+ K  + R+       ++G   K+  K+ +H 
Sbjct: 219 LPGIPGVGEKTAAKWINQFGSFKELVERAD-----EVKG---KVGEKLRDHL 262


>gi|295110596|emb|CBL24549.1| helicase, putative, RecD/TraA family [Ruminococcus obeum A2-162]
          Length = 742

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ FG  T++++    PE LA I+GIS+K A +I
Sbjct: 91  IKGIGAALAGRIVRHFGADTLRIVEE-EPERLAEIKGISEKKAHEI 135


>gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185]
 gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 891

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  FGTV+ +     E +  + G       K+     +N    
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEAVY----ENIDQVSG------KKLKEKLEENKEQA 251


>gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7]
 gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7]
          Length = 886

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ I   + ++L  
Sbjct: 194 DNIPGVTKIGEKTALKLLKEYGSVEGIYE-NIDSLKK 229


>gi|17229209|ref|NP_485757.1| NAD-dependent DNA ligase LigA [Nostoc sp. PCC 7120]
 gi|81772126|sp|Q8YW98|DNLJ_ANASP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|17135537|dbj|BAB78083.1| DNA ligase [Nostoc sp. PCC 7120]
          Length = 677

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G +  +LL + +  V  +S +    +  I GI  +IA  +Y  F  N + +
Sbjct: 521 GIRHVGSVNAQLLSEKYRAVAELSSAKQSDIEGIYGIGAEIAQSVYQWFRINANQS 576


>gi|121605696|ref|YP_983025.1| hypothetical protein Pnap_2802 [Polaromonas naphthalenivorans CJ2]
 gi|120594665|gb|ABM38104.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 119

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQ-----SFGTVKMISRSSPETLASIEGISKKIACK 602
           KA+ + LD I G+GP   + ++       F +           +A ++G+ +K A K
Sbjct: 25  KASEAELDGIKGVGPATSQRIVAERKKSEFKSWDDF-------IARVKGVGEKNAAK 74


>gi|146295826|ref|YP_001179597.1| DNA repair protein RadC [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409402|gb|ABP66406.1| DNA repair protein RadC [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 230

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ +FG++  +  + P+ L  +EG+ +  A  I
Sbjct: 50  RLISTFGSISNVFEAHPKELQKVEGVGENSAILI 83


>gi|312875489|ref|ZP_07735492.1| comEA protein [Lactobacillus iners LEAF 2053A-b]
 gi|311089000|gb|EFQ47441.1| comEA protein [Lactobacillus iners LEAF 2053A-b]
          Length = 210

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ---SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L +++GIG  R   +++     G  K     S + L  + GI  K   K+  H 
Sbjct: 155 ATAQELQKLSGIGQKRAEQIIECRERIGGFK-----SIDDLKQVSGIGVKTIEKLKPHL 208


>gi|293374089|ref|ZP_06620425.1| comEA protein [Turicibacter sanguinis PC909]
 gi|292647296|gb|EFF65270.1| comEA protein [Turicibacter sanguinis PC909]
          Length = 192

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L  + GIG  +   ++Q    +G  +     S E L ++ GI +K    + +  
Sbjct: 141 ELKNLPGIGKTKAAAIIQYRMDYGPFQ-----SIEELKNVTGIGEKTFESLEDFI 190


>gi|257469304|ref|ZP_05633398.1| DNA repair protein radC [Fusobacterium ulcerans ATCC 49185]
 gi|317063551|ref|ZP_07928036.1| DNA repair protein radC [Fusobacterium ulcerans ATCC 49185]
 gi|313689227|gb|EFS26062.1| DNA repair protein radC [Fusobacterium ulcerans ATCC 49185]
          Length = 229

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 26/78 (33%)

Query: 544 THRKRRK-KAAYS---------PLD-----EINGIGPLRK------RLLLQSFGTVKMIS 582
            HRKR K K   S          L+      I      RK      + LL+ FG+   I 
Sbjct: 8   GHRKRLKEKYMKSGYEAFHEYEILEILLTYSIP-----RKDVKPIAKNLLEVFGSTGKIF 62

Query: 583 RSSPETLASIEGISKKIA 600
            +  + L  ++GI +  A
Sbjct: 63  GADIKELLKVDGIGESTA 80


>gi|228982993|ref|ZP_04143252.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407]
 gi|228777176|gb|EEM25484.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407]
          Length = 669

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPE------TLASIEGISKKIACKIYNHFHKN 610
           I  +G    + + + F T++ +   S +       L  I+GI + +A  + ++F ++
Sbjct: 501 IPNVGSSTGKDIAKKFKTMRHLIELSKDPVVLKTELMKIDGIGETVASSMVSYFEES 557


>gi|151505395|gb|ABG29150.2| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 146

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
               L  + GIGP +   LL  FG+++ I     E +  I G +K+     Y   H
Sbjct: 38  TSDRLKGVAGIGPKKAVSLLNEFGSLEAIY----ENIGKISGKTKEYLENDYESAH 89


>gi|120437576|ref|YP_863262.1| Smf family protein [Gramella forsetii KT0803]
 gi|117579726|emb|CAL68195.1| Smf family protein [Gramella forsetii KT0803]
          Length = 366

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            L  I  +G    + L++  G+ + I +     L  I+GI +    ++++  H   + 
Sbjct: 11  ALQHIPNLGDTTAKKLIRKLGSAENIFKEKKINLLKIDGIGQIRIKELHDTKHLKAAE 68


>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14]
 gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
          Length = 923

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKIYNHFHKNTS 612
            + G+G    + LL   G +  +   + + +A++ G   SK +A K+ +  +K  +
Sbjct: 192 GVPGVGEKTAKALLTGIGGLDALYD-NLDDIAAL-GFRGSKTMAKKLID--NKEAA 243


>gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 897

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETL-ASIEGISKKI-------ACKI 603
            I G+G +    L++ FGT + +  + P  + A++    +K+       A +I
Sbjct: 192 GIPGVGEVTAAALVRHFGTTEAML-ARPAEIPAAVSRGGEKLRDKVVANAERI 243


>gi|120599396|ref|YP_963970.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Shewanella sp. W3-18-1]
 gi|120559489|gb|ABM25416.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Shewanella sp. W3-18-1]
          Length = 127

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S E L  ++GI    A  I ++
Sbjct: 68  NINTASVEELQELKGIGAAKAQAIVDY 94


>gi|146292608|ref|YP_001183032.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Shewanella putrefaciens CN-32]
 gi|145564298|gb|ABP75233.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Shewanella putrefaciens CN-32]
 gi|319425909|gb|ADV53983.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Shewanella putrefaciens 200]
          Length = 127

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S E L  ++GI    A  I ++
Sbjct: 68  NINTASVEELQELKGIGAAKAQAIVDY 94


>gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
 gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
          Length = 905

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 19/60 (31%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG---------------ISKKIACKI 603
            I GIG      LL SFG+++ +     E + ++ G               +SKK+A  I
Sbjct: 191 GIPGIGEKTALKLLWSFGSLEQV----LENVDAVPGNKLKALLKEYPEQALLSKKLATMI 246


>gi|317374947|sp|A8NQC2|FEN1_COPC7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 458

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMI 581
           L+ I G+GP     L++ FG +K +
Sbjct: 236 LEPIKGVGPKSALKLIREFGGLKEV 260


>gi|302671164|ref|YP_003831124.1| competence protein ComEA [Butyrivibrio proteoclasticus B316]
 gi|302395637|gb|ADL34542.1| competence protein ComEA [Butyrivibrio proteoclasticus B316]
          Length = 224

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNH 606
           +   I+ ++ E L ++ GI K IA KI ++
Sbjct: 162 SFININTATAEELMTLPGIGKGIAGKIIDY 191


>gi|222530670|ref|YP_002574552.1| RecD/TraA family helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|222457517|gb|ACM61779.1| helicase, RecD/TraA family [Caldicellulosiruptor bescii DSM 6725]
          Length = 741

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I GIG    + ++ +FG     I +  PE L SI G++ +   +I N F
Sbjct: 89  IKGIGQKTAKKIVDTFGDDTARILQQEPEKLLSIRGMTPEKVERIRNMF 137


>gi|67971340|dbj|BAE02012.1| unnamed protein product [Macaca fascicularis]
          Length = 582

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+     R L+     +  ++  S + L SI G +   A ++Y+  H + + 
Sbjct: 518 LLKMPGVNAKNCRSLMHHVKNIAELATLSQDKLTSILG-NAANAKQLYDFIHTSYAE 573


>gi|74612809|sp|Q76F73|FEN1_COPCI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|46092541|dbj|BAD14303.1| flap endonuclease-1 [Coprinopsis cinerea]
          Length = 458

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMI 581
           L+ I G+GP     L++ FG +K +
Sbjct: 236 LEPIKGVGPKSALKLIREFGGLKEV 260


>gi|332300396|ref|YP_004442317.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177459|gb|AEE13149.1| Holliday junction ATP-dependent DNA helicase ruvA [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 202

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET------LASIEGISKKIACKIYN 605
           A ++ L  ++G+GP   R++L    ++  +  +          L  ++GI  K A +I  
Sbjct: 73  ALFTKLITVSGVGPATARVILS---SLAPLELAEVIESGDDKRLKMVKGIGLKTAQRIIV 129

Query: 606 HFHKNTSHTPT 616
                   T T
Sbjct: 130 DLKGKLPETLT 140


>gi|323464267|gb|ADX76420.1| Holliday junction DNA helicase RuvA [Staphylococcus
           pseudintermedius ED99]
          Length = 199

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  +   + R+        L    GI KK A +I
Sbjct: 69  KDMFLSLIKVTGIGPKSALAILAA-SSPNEVKRAIENENDAYLTQFPGIGKKTARQI 124


>gi|313886562|ref|ZP_07820276.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923972|gb|EFR34767.1| Holliday junction DNA helicase RuvA [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 202

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET------LASIEGISKKIACKIYN 605
           A ++ L  ++G+GP   R++L    ++  +  +          L  ++GI  K A +I  
Sbjct: 73  ALFTKLITVSGVGPATARVILS---SLAPLELAEVIESGDDKRLKMVKGIGLKTAQRIIV 129

Query: 606 HFHKNTSHTPT 616
                   T T
Sbjct: 130 DLKGKLPETLT 140


>gi|310779296|ref|YP_003967629.1| DNA integrity scanning, DisA, linker region [Ilyobacter polytropus
           DSM 2926]
 gi|309748619|gb|ADO83281.1| DNA integrity scanning, DisA, linker region [Ilyobacter polytropus
           DSM 2926]
          Length = 354

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 563 IGPLRK------RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G + +        ++  +  +  I  +S E L  I GISK  A  I N   +
Sbjct: 293 LGKITRLNKRDIEKIITEYDDLASIKDASVEDLYEIRGISKFKARSIKNGLKR 345


>gi|307243840|ref|ZP_07525969.1| helicase, RecD/TraA family [Peptostreptococcus stomatis DSM 17678]
 gi|306492778|gb|EFM64802.1| helicase, RecD/TraA family [Peptostreptococcus stomatis DSM 17678]
          Length = 739

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I G+G    + ++  FG  T+ +I    P+ L  IEGI KK    I   + +N
Sbjct: 88  IRGVGEKTAKRIVDRFGLETLNVIQN-EPDRLLEIEGIGKKKLQPIIESYQEN 139


>gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
 gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
          Length = 923

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT++ I  ++ + L        KI+  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLENII-ANADQLKG------KISQNIKDNL 228


>gi|296454195|ref|YP_003661338.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JDM301]
 gi|312132689|ref|YP_004000028.1| ruva [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483238|ref|ZP_07942233.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689208|ref|YP_004208942.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691274|ref|YP_004220844.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|291516874|emb|CBK70490.1| Holliday junction DNA helicase subunit RuvA [Bifidobacterium longum
           subsp. longum F8]
 gi|296183626|gb|ADH00508.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JDM301]
 gi|311773647|gb|ADQ03135.1| RuvA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915307|gb|EFV36734.1| Holliday junction DNA helicase RuvA [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320456130|dbj|BAJ66752.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460544|dbj|BAJ71164.1| holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 208

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 541 AITTHRKRRKKAAYSPLDEIN--GIGPLRKRLLLQSFGTVKMISRS----SPETLASIEG 594
           AIT H    + A  + L  I   GIGP   + LL +  T   ++ +        LA   G
Sbjct: 56  AITLHGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTL-TPSQLAHAIADNDATALAKAPG 114

Query: 595 ISKKIACKIYNHFHKNTS 612
           + KK A KI      +  
Sbjct: 115 LGKKGAQKIILELKGSID 132


>gi|290994530|ref|XP_002679885.1| predicted protein [Naegleria gruberi]
 gi|284093503|gb|EFC47141.1| predicted protein [Naegleria gruberi]
          Length = 261

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 51/203 (25%), Gaps = 18/203 (8%)

Query: 331 VPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHI 390
           +    + +         +     Q                    L    K I   D S  
Sbjct: 1   MRASNDGKSNHNNGFDYSGWKTEQYNLKRQMILRDHNLTFDPKNLDKTLKLIGGVDISFE 60

Query: 391 MGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLN 450
            G S      ++  +                V  + +   M +     +    +      
Sbjct: 61  NGNSNRAIATLIVLSFPDLK----------IVHEESEQVEMTLPYIAGYLAFREVPHIQR 110

Query: 451 FHPKKQEYSFPSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKG--------PK 502
                +       P V+++DG         G    L V   I  I +AK          +
Sbjct: 111 LIENVRNKVPHMMPQVILVDGNGHLHQRGFGSACHLGVVENIPTIGVAKKILMVKGLTDE 170

Query: 503 RSAGMEKFFVKKGEALVLNMRDP 525
              G+E+   +KGE + +++   
Sbjct: 171 YIDGLEQQLTRKGECIDIDIDSE 193


>gi|261493369|ref|ZP_05989895.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496635|ref|ZP_05993015.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307838|gb|EEY09161.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311013|gb|EEY12190.1| crossover junction endonuclease RuvA [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 201

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET- 588
           +R++AH    FA     +++ +  +  L + NG+GP     +L +  +V   + +     
Sbjct: 53  VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVSQFATAIENEE 106

Query: 589 ---LASIEGISKKIACKIYNHFH 608
              L  I GI +K A ++     
Sbjct: 107 LAKLTKIPGIGRKTAERLLVELK 129


>gi|150402395|ref|YP_001329689.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C7]
 gi|166218762|sp|A6VGG2|RADA_METM7 RecName: Full=DNA repair and recombination protein radA
 gi|150033425|gb|ABR65538.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis C7]
          Length = 322

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISK 597
            L E+ G+GP     L+++ +     I+ ++   L  IEGIS+
Sbjct: 4   VLTELPGVGPSTAEKLIEAGYLDFMKIATATIGELTDIEGISE 46


>gi|159040632|ref|YP_001539884.1| flap endonuclease-1 [Caldivirga maquilingensis IC-167]
 gi|189044441|sp|A8M9L3|FEN_CALMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|157919467|gb|ABW00894.1| XPG I [Caldivirga maquilingensis IC-167]
          Length = 350

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISR 583
           + I GIGP R   L+Q +G++  +  
Sbjct: 245 EGIPGIGPQRALRLIQEYGSLDKLMN 270


>gi|47226306|emb|CAG09274.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 180

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           LL +F +V+ I  +S E L    G+  +   +IY 
Sbjct: 146 LLSTFSSVEGIMNASKEDLVLCPGLGPQKVGRIYK 180


>gi|23335124|ref|ZP_00120362.1| COG0632: Holliday junction resolvasome, DNA-binding subunit
           [Bifidobacterium longum DJO10A]
 gi|23465306|ref|NP_695909.1| holliday junction DNA helicase RuvA [Bifidobacterium longum
           NCC2705]
 gi|189439315|ref|YP_001954396.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium
           longum DJO10A]
 gi|227547258|ref|ZP_03977307.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239621474|ref|ZP_04664505.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|44888506|sp|Q8G6B8|RUVA_BIFLO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560004|sp|B3DRX9|RUVA_BIFLD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|23325944|gb|AAN24545.1| probable holliday junction DNA helicase RuvA [Bifidobacterium
           longum NCC2705]
 gi|189427750|gb|ACD97898.1| Holliday junction resolvasome DNA-binding subunit [Bifidobacterium
           longum DJO10A]
 gi|227212217|gb|EEI80113.1| Holliday junction DNA helicase RuvA [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239515935|gb|EEQ55802.1| holliday junction ATP-dependent DNA helicase ruvA [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 208

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 541 AITTHRKRRKKAAYSPLDEIN--GIGPLRKRLLLQSFGTVKMISRS----SPETLASIEG 594
           AIT H    + A  + L  I   GIGP   + LL +  T   ++ +        LA   G
Sbjct: 56  AITLHGFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTL-TPSQLAHAIADNDATALAKAPG 114

Query: 595 ISKKIACKIYNHFHKNTS 612
           + KK A KI      +  
Sbjct: 115 LGKKGAQKIILELKGSID 132


>gi|323702385|ref|ZP_08114050.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532691|gb|EGB22565.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 206

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 12/48 (25%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKK 598
            L+ + GIGP     ++Q         ++     S E L ++ GI  K
Sbjct: 154 ELESLPGIGPTLANRIIQH-------RQANGPFQSIEDLKNVSGIGDK 194


>gi|126460634|ref|YP_001056912.1| Rad51-like protein [Pyrobaculum calidifontis JCM 11548]
 gi|126250355|gb|ABO09446.1| Rad51-like protein [Pyrobaculum calidifontis JCM 11548]
          Length = 314

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           KK    PL+E+ G+GP     L +  G  +V+ ++  + E L    G+    A KI  
Sbjct: 5   KKRERDPLEELEGVGPKTLERL-RELGVTSVEHLAEFTVEELVEA-GVEYDRAVKILQ 60


>gi|13357678|ref|NP_077952.1| DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762219|ref|YP_001752204.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|183508850|ref|ZP_02958298.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|81549679|sp|Q9PR23|DNLJ_UREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781447|sp|B1AIB0|DNLJ_UREP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|11272940|pir||F82930 DNA ligase UU121 [imported] - Ureaplasma urealyticum
 gi|6899079|gb|AAF30527.1|AE002113_1 DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827796|gb|ACA33058.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|182675825|gb|EDT87730.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 673

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   + + + F T+  +  ++ + L +++   +K A  + N F+  
Sbjct: 515 GIRHVGPNLAKKIAKQFKTMTALMHANFDELTNVDACGEKAALSLINWFNDE 566


>gi|312871443|ref|ZP_07731538.1| comEA protein [Lactobacillus iners LEAF 3008A-a]
 gi|311093096|gb|EFQ51445.1| comEA protein [Lactobacillus iners LEAF 3008A-a]
          Length = 210

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ---SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L +++GIG  R   +++     G  K     S + L  + GI  K   K+  H 
Sbjct: 155 ATAQELQKLSGIGQKRAEQIIECRERIGGFK-----SIDDLKQVSGIGVKTIEKLKPHL 208


>gi|300785073|ref|YP_003765364.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
 gi|299794587|gb|ADJ44962.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
          Length = 663

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 19/33 (57%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           FG+++ ++ +  + L ++E I  K+A  +  H 
Sbjct: 513 FGSLEDVAEAGVDGLVAVEDIGPKVAASLIEHL 545


>gi|284929265|ref|YP_003421787.1| Holliday junction DNA helicase subunit RuvA [cyanobacterium UCYN-A]
 gi|284809709|gb|ADB95406.1| Holliday junction DNA helicase, RuvA subunit [cyanobacterium
           UCYN-A]
          Length = 213

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L  INGIG      LL + G+   +K +   + + L+   G+ KK A +I    +
Sbjct: 80  QLININGIGAQLSITLLNTLGSEKLIKAVCSGNVKMLSESPGVGKKTAERIILELN 135


>gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
 gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
          Length = 923

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I  ++ + L        KI+  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNII-ANADQLKG------KISQNIKDNL 228


>gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322]
 gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322]
          Length = 837

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ +   + + +  
Sbjct: 149 DNIPGVTKIGEKTAIKLLKQYGSVEGVYE-NIDEMKK 184


>gi|297195391|ref|ZP_06912789.1| 5'-3' exonuclease [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152763|gb|EDY63147.2| 5'-3' exonuclease [Streptomyces pristinaespiralis ATCC 25486]
          Length = 306

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL ++G +  I  +
Sbjct: 202 LPGVPGIGEKTAAKLLDTYGDLDGIMAA 229


>gi|149181794|ref|ZP_01860285.1| DNA repair protein RadC [Bacillus sp. SG-1]
 gi|148850535|gb|EDL64694.1| DNA repair protein RadC [Bacillus sp. SG-1]
          Length = 229

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L +F  ++++  +S E + +I+GI    A +I    
Sbjct: 56  LTTFEGLRLLKEASLEEIMNIKGIGLAKAVQIMAAL 91


>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  + GIG    R LL+ +G+++ +       L +++ +   I  KI  H
Sbjct: 193 LPGVKGIGEKTARKLLEEWGSLEAL-------LKNLDRLKPAIREKILAH 235


>gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 880

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHKFGSLEGIYE 224


>gi|303228968|ref|ZP_07315778.1| comEA protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516382|gb|EFL58314.1| comEA protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 175

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPETLASIEGISKKIACKIYN 605
           A    LD + GIGP   + + +     +    +  S E +  ++GI   +  KI +
Sbjct: 120 ATVKELDSLPGIGPTMAKRIEEY----RQSKGAFTSIEDIKHVKGIGDGLFKKIRD 171


>gi|303231428|ref|ZP_07318159.1| comEA protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302513865|gb|EFL55876.1| comEA protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 209

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPETLASIEGISKKIACKIYN 605
           A    LD + GIGP   + + +     +    +  S E +  ++GI   +  KI +
Sbjct: 154 ATVKELDSLPGIGPTMAKRIEEY----RQSKGAFTSIEDIKHVKGIGDGLFKKIRD 205


>gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
 gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
          Length = 848

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ +   + + +  
Sbjct: 160 DNIPGVTKIGEKTAIKLLKQYGSVEGVYE-NIDEMKK 195


>gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
 gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
          Length = 888

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            + GIGP     LLQ F +V+ I  ++ + + S
Sbjct: 201 GVPGIGPKTATKLLQDFDSVENIL-ANLDKITS 232


>gi|229163410|ref|ZP_04291361.1| DNA repair protein radC [Bacillus cereus R309803]
 gi|228619979|gb|EEK76854.1| DNA repair protein radC [Bacillus cereus R309803]
          Length = 225

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELVSIHGVGIAKASQLMAAF 87


>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
 gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
          Length = 930

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGIGEKTAQKLIAEFGSIENLLE 220


>gi|189237585|ref|XP_975030.2| PREDICTED: similar to importin alpha [Tribolium castaneum]
          Length = 1121

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+++S E L ++ G+S++ A  I  H
Sbjct: 152 NINQASEEELMTLPGVSRETARSIVEH 178


>gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1]
 gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus
           pyogenes SSI-1]
          Length = 880

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHKFGSLEGIYE 224


>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 872

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            I G+GP     + + FG+++ I  
Sbjct: 198 GIPGVGPKTAEKIFKDFGSLEDIRD 222


>gi|149204150|ref|ZP_01881118.1| hypothetical protein RTM1035_11530 [Roseovarius sp. TM1035]
 gi|149142592|gb|EDM30637.1| hypothetical protein RTM1035_11530 [Roseovarius sp. TM1035]
          Length = 179

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 6  MPECPGVYQMLDIAGRVLYVGKAYN-LQKRIKSYMHSNNHT 45
          + +  GVY + D+ G  +YVG++ + ++ R++ ++ S    
Sbjct: 15 LTDEIGVYALCDLDGIPIYVGQSVDGIRSRVRRHLTSARSD 55


>gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
 gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
          Length = 853

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      L+  FG++  +   S E +A 
Sbjct: 186 DNIPGVPSIGVKTAAKLINEFGSLDNVLN-SVEQVAQ 221


>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
 gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
           polymerase 1
 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
          Length = 834

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  + GIG      LL+ +G+++ +     + L  ++   + +  KI  H 
Sbjct: 194 LPGVKGIGEKTALKLLKEWGSLENL----LKNLDRVK--PENVREKIKAHL 238


>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
          Length = 832

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  + GIG    R LL+ +G+++ +       L +++ +   I  KI  H
Sbjct: 193 LPGVKGIGEKTARKLLEEWGSLEAL-------LKNLDRLKPAIREKILAH 235


>gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
           polymerase 1
 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
           Orientation For The Structure-Specific Nuclease Domain
 gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
 gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
          Length = 832

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  + GIG    R LL+ +G+++ +       L +++ +   I  KI  H
Sbjct: 193 LPGVKGIGEKTARKLLEEWGSLEAL-------LKNLDRLKPAIREKILAH 235


>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 833

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  + GIG    R LL+ +G+++ +       L +++ +   I  KI  H
Sbjct: 194 LPGVKGIGEKTARKLLEEWGSLEAL-------LKNLDRLKPAIREKILAH 236


>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
 gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
          Length = 829

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  + GIG    R LL+ +G+++ +       L +++ +   I  KI  H
Sbjct: 190 LPGVKGIGEKTARKLLEEWGSLEAL-------LKNLDRLKPAIREKILAH 232


>gi|319638552|ref|ZP_07993314.1| DNA ligase [Neisseria mucosa C102]
 gi|317400301|gb|EFV80960.1| DNA ligase [Neisseria mucosa C102]
          Length = 822

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT++ +  +    LA +  I   +A  I + F +     
Sbjct: 587 GIRHVGERTAKTLAQAFGTLEHVRHAPEPILACLPDIGTVVAHSIAHFFAQEAQQA 642


>gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346]
          Length = 882

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ +   + + +  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGVYE-NIDEMKK 229


>gi|326775447|ref|ZP_08234712.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
 gi|326655780|gb|EGE40626.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
          Length = 712

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G G    R + + F T+  I  +  E+L  ++GI K+ A  +    
Sbjct: 523 GVRGTGRSMSRRIARHFATMDRIVAADAESLQRVDGIGKEKAAAVVAEL 571


>gi|326780346|ref|ZP_08239611.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Streptomyces cf. griseus XylebKG-1]
 gi|326660679|gb|EGE45525.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Streptomyces cf. griseus XylebKG-1]
          Length = 302

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL ++G +  I  +
Sbjct: 198 LPGVPGIGEKTAAKLLDAYGDLDGIMAA 225


>gi|269138790|ref|YP_003295491.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella
           tarda EIB202]
 gi|267984451|gb|ACY84280.1| holliday junction resolvasome, DNA-binding subunit [Edwardsiella
           tarda EIB202]
 gi|304558782|gb|ADM41446.1| Holliday junction DNA helicase RuvA [Edwardsiella tarda FL6-60]
          Length = 202

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 13/81 (16%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++A +  L ++NG+GP     +L     Q F  V  + R     L  + G+ KK A 
Sbjct: 65  NKQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREEVAALVKLPGVGKKTAE 122

Query: 602 KI----YNHFHKNTSH--TPT 616
           ++     + F   +    TPT
Sbjct: 123 RLVVEMKDRFKGLSGDLFTPT 143


>gi|239940070|ref|ZP_04692007.1| putative 5'-3' exonuclease [Streptomyces roseosporus NRRL 15998]
 gi|239986559|ref|ZP_04707223.1| putative 5'-3' exonuclease [Streptomyces roseosporus NRRL 11379]
 gi|291443499|ref|ZP_06582889.1| 5'-3' exonuclease [Streptomyces roseosporus NRRL 15998]
 gi|291346446|gb|EFE73350.1| 5'-3' exonuclease [Streptomyces roseosporus NRRL 15998]
          Length = 302

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL ++G +  I  +
Sbjct: 198 LPGVPGIGEKTAAKLLDAYGDLDGIMAA 225


>gi|182439682|ref|YP_001827401.1| putative 5'-3' exonuclease [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178468198|dbj|BAG22718.1| putative 5'-3' exonuclease [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 307

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL ++G +  I  +
Sbjct: 203 LPGVPGIGEKTAAKLLDAYGDLDGIMAA 230


>gi|182434930|ref|YP_001822649.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|254778149|sp|B1VUC2|DNLJ1_STRGG RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] 1
 gi|178463446|dbj|BAG17966.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 719

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G G    R + + F T+  I  +  E+L  ++GI K+ A  +    
Sbjct: 530 GVRGTGRSMSRRIARHFATMDRIVAADAESLQRVDGIGKEKAAAVVAEL 578


>gi|326803735|ref|YP_004321553.1| Holliday junction DNA helicase RuvA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651259|gb|AEA01442.1| Holliday junction DNA helicase RuvA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 203

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     +L       F  +  I   + + L    G+ KK A +I
Sbjct: 69  KQLFLQLISVSGIGPKSALSILAYGDQAGF--IAAIESENVKFLTKFPGVGKKTAQQI 124


>gi|307299000|ref|ZP_07578802.1| protein of unknown function DUF147 [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915425|gb|EFN45810.1| protein of unknown function DUF147 [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 359

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + FGT   +  SS + L  ++GI +K A  I
Sbjct: 311 KEFGTFSNLLESSEDELKDVDGIGEKRASAI 341


>gi|291561986|emb|CBL40797.1| helicase, putative, RecD/TraA family [butyrate-producing bacterium
           SS3/4]
          Length = 748

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG    + +++ F   T   I    PE LA ++G+S+++A +I
Sbjct: 88  IKGIGAALAKRIVKKFKADTF-RIMEEEPERLAEVKGVSERMAMEI 132


>gi|257063736|ref|YP_003143408.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Slackia heliotrinireducens DSM 20476]
 gi|256791389|gb|ACV22059.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Slackia heliotrinireducens DSM 20476]
          Length = 243

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISR---SSPETLASIEGISKKIACKIYN 605
           A  S L +++GIGP     +++        +    +S E L  + GI +K   KI +
Sbjct: 188 ADASELQQLSGIGPATAEAIVK-----DREANGPFASVEDLQRVSGIGEKKYAKIAD 239


>gi|218281325|ref|ZP_03487813.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989]
 gi|218217510|gb|EEC91048.1| hypothetical protein EUBIFOR_00378 [Eubacterium biforme DSM 3989]
          Length = 192

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
            L  + GIGP   + +L        ++ I     + L S+ GI  K A +I
Sbjct: 71  RLINVKGIGPKTAQTMLSVCSGKEMIEAIENDDIKRLKSLPGIGAKTAGQI 121


>gi|217034714|ref|ZP_03440116.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10]
 gi|216942827|gb|EEC22324.1| hypothetical protein HP9810_896g11 [Helicobacter pylori 98-10]
          Length = 183

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|166030539|ref|ZP_02233368.1| hypothetical protein DORFOR_00200 [Dorea formicigenerans ATCC
           27755]
 gi|166029701|gb|EDR48458.1| hypothetical protein DORFOR_00200 [Dorea formicigenerans ATCC
           27755]
          Length = 743

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I G+GP     +++ FG  T ++I    PE LA ++GIS++ A +I
Sbjct: 88  IKGVGPSLAGRIVKKFGGDTFRIIEE-EPERLAEVKGISERKAREI 132


>gi|58578636|ref|YP_203356.1| orf261 [Mortierella verticillata]
 gi|57545569|gb|AAW51693.1| orf261 [Mortierella verticillata]
          Length = 261

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 18/98 (18%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN-HTHRITHMISQINN---------- 57
             G+YQ   +    +Y+G A +L KR+K Y    +   ++  ++ + + +          
Sbjct: 64  KAGIYQWKHLESGKIYIGSAIDLTKRLKDYYSFYHLDRNKYMYICNALRHYGYSAFSLSI 123

Query: 58  IRFT----VTCTEVEALLL--EANMIKRLKPRFNILLR 89
           I +     ++  E + L+L  E   I    P +N LL+
Sbjct: 124 IEYINIQNLSKNETKKLILKREQYYINLFNPEYN-LLK 160


>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus]
 gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
          Length = 834

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  + GIG      LL+ +G+++ +     + L  ++   + +  KI  H 
Sbjct: 194 LPGVKGIGEKTALKLLKEWGSLENL----LKNLDRVK--PENVREKIKAHL 238


>gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342]
          Length = 882

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ +   + + +  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGVYE-NIDEMKK 229


>gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302]
          Length = 882

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ +   + + +  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGVYE-NIDEMKK 229


>gi|294789790|ref|ZP_06755020.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
 gi|294482296|gb|EFG29993.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
          Length = 798

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 542 ITTHRK-RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           I   RK    +  YS    I  +G    + L  +FG +  +  +    LA +  I   +A
Sbjct: 542 IENSRKPLLSRFLYS--LGIRHVGESTAKQLANAFGDLATVRHAPEPVLACLPDIGSVVA 599

Query: 601 CKIYNHFHK 609
             I ++F +
Sbjct: 600 HSIAHYFRQ 608


>gi|293390518|ref|ZP_06634852.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951052|gb|EFE01171.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 204

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 528 YFIQRL--RDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS 582
                L  R++AH    FA     ++  +  +  L + NG+GP     +L +  +V   +
Sbjct: 46  RLFTHLVVREDAHLLFGFA-----QKADRTLFRELIKTNGVGPKLALAILSAM-SVDEFA 99

Query: 583 RS-SPETLA---SIEGISKKIACKIYNHFHKNTSHTPT 616
            +   E L+    I GI KK A ++            T
Sbjct: 100 YAIEREELSRLVKIPGIGKKTAERLLVELKGKFKEVKT 137


>gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000]
          Length = 882

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ +   + + +  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGVYE-NIDEMKK 229


>gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG]
 gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG]
 gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137]
 gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62]
 gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF]
          Length = 882

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ +   + + +  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGVYE-NIDEMKK 229


>gi|226311483|ref|YP_002771377.1| hypothetical protein BBR47_18960 [Brevibacillus brevis NBRC 100599]
 gi|226094431|dbj|BAH42873.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 753

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 562 GIGPLRKRLLLQSFGTVKMISR-SSP-ETLASIEGISKKIACKIYN 605
           GIG    + +++  G V  +S  +   E LA + GIS++ A  IY+
Sbjct: 108 GIGKKMAKRIVEQLG-VDALSIIADFPERLAEVPGISEQRAKTIYD 152


>gi|206561051|ref|YP_002231816.1| DNA repair protein RadC [Burkholderia cenocepacia J2315]
 gi|198037093|emb|CAR53014.1| putative DNA repair protein [Burkholderia cenocepacia J2315]
          Length = 209

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           +  R L++ FGT++ +  +S +   +  GI   
Sbjct: 30  VTARALVEQFGTLRGLLEASADDFEAYPGIGPA 62


>gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46]
 gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46]
          Length = 1016

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMI--SRSSPET 588
            + GIG      LL+ FG+++ +    +  + 
Sbjct: 222 GVPGIGLKTAAALLKEFGSLEALLERAAEIKQ 253


>gi|158316901|ref|YP_001509409.1| DNA recombination protein RuvA [Frankia sp. EAN1pec]
 gi|158112306|gb|ABW14503.1| DNA recombination protein RuvA domain I [Frankia sp. EAN1pec]
          Length = 239

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQ-SFGTVKMISRSSPET----LASIEGISKKIACKI 603
           +  +  L    G+GP   + +L     +  +I R+  E     L  + GI +K A +I
Sbjct: 68  RDVFEILQGAAGVGPRLAQAVLGVH--SPDVIRRAVAEEDLATLTKVPGIGRKSAQRI 123


>gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76]
 gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017]
 gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027]
 gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141]
 gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244]
 gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012]
 gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031]
 gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043]
 gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312]
 gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341]
 gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
 gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
 gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467]
          Length = 882

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ +   + + +  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGVYE-NIDEMKK 229


>gi|301057898|ref|ZP_07198960.1| competence protein ComEA helix-hairpin-helix repeat region [delta
           proteobacterium NaphS2]
 gi|300447985|gb|EFK11688.1| competence protein ComEA helix-hairpin-helix repeat region [delta
           proteobacterium NaphS2]
          Length = 99

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
            I++++ E LA + G++++IA  I     K    
Sbjct: 32  NINKATVEELAKLPGMTQEIAEGIVE-LRKERGE 64


>gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol]
 gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol]
          Length = 882

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ +   + + +  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGVYE-NIDEMKK 229


>gi|195609050|gb|ACG26355.1| hypothetical protein [Zea mays]
          Length = 134

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           ++  I   S + LA   GI ++   ++Y+ FH+
Sbjct: 5   SLSQIMNGSMDELARCPGIGERKVRRLYDTFHE 37


>gi|46204531|ref|ZP_00049860.2| COG0507: ATP-dependent exoDNAse (exonuclease V), alpha subunit -
           helicase superfamily I member [Magnetospirillum
           magnetotacticum MS-1]
          Length = 565

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 562 GIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603
           GIGP   + ++ +FG  V  I  + P  L  +EGI  K A +I
Sbjct: 101 GIGPAMAKRIVATFGEAVFEIIEAEPARLTEVEGIGPKRAARI 143


>gi|309807975|ref|ZP_07701902.1| comEA protein [Lactobacillus iners LactinV 01V1-a]
 gi|325912858|ref|ZP_08175236.1| comEA protein [Lactobacillus iners UPII 60-B]
 gi|329921314|ref|ZP_08277752.1| comEA protein [Lactobacillus iners SPIN 1401G]
 gi|308168783|gb|EFO70874.1| comEA protein [Lactobacillus iners LactinV 01V1-a]
 gi|325477851|gb|EGC80985.1| comEA protein [Lactobacillus iners UPII 60-B]
 gi|328934606|gb|EGG31110.1| comEA protein [Lactobacillus iners SPIN 1401G]
          Length = 210

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ---SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L +++GIG  R   +++     G  K     S + L  + GI  K   K+  H 
Sbjct: 155 ATAQELQKLSGIGQKRAEQIIECRERIGGFK-----SIDDLKQVSGIGVKTIEKLKPHL 208


>gi|301062204|ref|ZP_07202886.1| helicase, RecD/TraA family [delta proteobacterium NaphS2]
 gi|300443716|gb|EFK07799.1| helicase, RecD/TraA family [delta proteobacterium NaphS2]
          Length = 728

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIY 604
           +K   S L  I GIGP+  + ++  FG  T+++I     E L +++GI KK    I 
Sbjct: 83  QKYLGSGL--IKGIGPVMAKRIVARFGESTLELIEN-EAEKLLAVDGIGKKRIALIK 136


>gi|291437272|ref|ZP_06576662.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291340167|gb|EFE67123.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
          Length = 199

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 18/55 (32%)

Query: 6  MPECPGVYQMLDIA--------GRVLYVGKA----------YNLQKRIKSYMHSN 42
          +P   GVY              GR+LYVG A           NLQ R++ +   N
Sbjct: 43 VPAASGVYGWYFEQAPHPALVAGRLLYVGIAPRYMANRTSTQNLQNRVRYHFRGN 97


>gi|239928940|ref|ZP_04685893.1| hypothetical protein SghaA1_12017 [Streptomyces ghanaensis ATCC
          14672]
          Length = 163

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 18/55 (32%)

Query: 6  MPECPGVYQMLDIA--------GRVLYVGKA----------YNLQKRIKSYMHSN 42
          +P   GVY              GR+LYVG A           NLQ R++ +   N
Sbjct: 7  VPAASGVYGWYFEQAPHPALVAGRLLYVGIAPRYMANRTSTQNLQNRVRYHFRGN 61


>gi|210623819|ref|ZP_03294068.1| hypothetical protein CLOHIR_02019 [Clostridium hiranonis DSM 13275]
 gi|210153314|gb|EEA84320.1| hypothetical protein CLOHIR_02019 [Clostridium hiranonis DSM 13275]
          Length = 223

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 14/53 (26%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK 598
           A    LD + G+G      ++        F ++        E L +++GI  K
Sbjct: 168 ATLEQLDTLPGVGEATANKIITYREENGGFKSI--------EDLKNVKGIGDK 212


>gi|270007767|gb|EFA04215.1| hypothetical protein TcasGA2_TC014464 [Tribolium castaneum]
          Length = 547

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+++S E L ++ G+S++ A  I  H
Sbjct: 53  NINQASEEELMTLPGVSRETARSIVEH 79


>gi|160872442|ref|ZP_02062574.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
 gi|159121241|gb|EDP46579.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
          Length = 674

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 538 HRFAITTHRKRRKKAAYSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG 594
           HR AI    +  KK   +       I  +G      L Q F  +K I  +    L +I  
Sbjct: 501 HR-AI----QASKKTTLTRFLYSLGIRDVGISTALNLAQHFQALKPIMDADSALLQTIPD 555

Query: 595 ISKKIACKIYNHFHK 609
           I   +A  I   F +
Sbjct: 556 IGPVVATHIKKFFSE 570


>gi|1097211|prf||2113329A DNA polymerase
          Length = 834

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  + GIG      LL+ +G+++ +     + L  ++   + +  KI  H 
Sbjct: 194 LPGVKGIGEKTALKLLKEWGSLENL----LKNLDRVK--PENVREKIKAHL 238


>gi|312114833|ref|YP_004012429.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
 gi|311219962|gb|ADP71330.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
          Length = 777

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 32/83 (38%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMIS--------------------RSSPET---------- 588
            I  +G    +LL ++FG++  +                      +S E           
Sbjct: 593 GIRHVGETTAKLLAKTFGSLDALRAAMAEPDAAELRPGDELLLESASGEDKRSLHRAIIL 652

Query: 589 --LASIEGISKKIACKIYNHFHK 609
             L  I+GI   +A  I + F +
Sbjct: 653 AKLNEIDGIGDVVAQSIVDFFDE 675


>gi|290962622|ref|YP_003493804.1| DNA ligase [Streptomyces scabiei 87.22]
 gi|260652148|emb|CBG75280.1| putative DNA ligase [Streptomyces scabiei 87.22]
          Length = 704

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            + G G    R + + F T+  I  +  E +  +EGI  + A  I     +
Sbjct: 531 GVRGTGRSMSRRIARHFATMDDIRAADAEAIQRVEGIGTEKAPSIVAELAE 581


>gi|254785283|ref|YP_003072711.1| 5'-3' exonuclease [Teredinibacter turnerae T7901]
 gi|237683935|gb|ACR11199.1| 5'-3' exonuclease [Teredinibacter turnerae T7901]
          Length = 301

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D+I G   IG      LL  FG+ + I R
Sbjct: 191 DDIPGVAGIGGKTAAALLAEFGSWREIRR 219


>gi|229019679|ref|ZP_04176486.1| DNA repair protein radC [Bacillus cereus AH1273]
 gi|229025918|ref|ZP_04182310.1| DNA repair protein radC [Bacillus cereus AH1272]
 gi|228735364|gb|EEL85967.1| DNA repair protein radC [Bacillus cereus AH1272]
 gi|228741586|gb|EEL91779.1| DNA repair protein radC [Bacillus cereus AH1273]
          Length = 225

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELISIHGVGIAKASQLMAAF 87


>gi|189423594|ref|YP_001950771.1| DNA repair protein RadC [Geobacter lovleyi SZ]
 gi|254789653|sp|B3E339|Y523_GEOLS RecName: Full=UPF0758 protein Glov_0523
 gi|189419853|gb|ACD94251.1| DNA repair protein RadC [Geobacter lovleyi SZ]
          Length = 230

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           R LL+ F G ++ ++++    L  I+G+    A  I   F
Sbjct: 53  RELLERFDGNLRELAQAELNELQQIKGLGLAKAASIKAAF 92


>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus]
          Length = 923

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      LL  +GT+  I  ++ + L        KI+  I ++ 
Sbjct: 187 GVPGVGAKTAAKLLTEYGTLDNII-ANADQLKG------KISQNIKDNL 228


>gi|23099436|ref|NP_692902.1| late competence protein [Oceanobacillus iheyensis HTE831]
 gi|22777665|dbj|BAC13937.1| late competence protein (DNA binding and uptake) [Oceanobacillus
           iheyensis HTE831]
          Length = 198

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + +  + GI    A  I+ +
Sbjct: 138 RINYASVQEIEQLPGIGPSKAETIFQY 164


>gi|260102794|ref|ZP_05753031.1| DNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260083398|gb|EEW67518.1| DNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 689

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 497 IAKGPKRSAGMEKFFVKKGEALVLN--MRDPILYFIQRLRDEAHRFAITTHRKRRKKAAY 554
           IAK    +   + + + + +   L+      I   +          AI   +K   +   
Sbjct: 481 IAKDLVHNVA-DLYHLTEDDLAQLDHFKEKSINNLLT---------AIDNSKKNSVELLI 530

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L  I+ +G    RL+ Q F  ++ I     + +ASI+ I    A  +  +F
Sbjct: 531 TGL-GIDHVGAKAARLIAQKFKNLEKIMSLGVQDIASIDTIGMTTAESMTTYF 582


>gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4]
          Length = 876

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL+ F +++ +     E++  + G       K+     +N    
Sbjct: 193 GVPGVGEKTAIKLLKQFSSIEQL----LESIDEVSG------KKLKEKLEENKEQA 238


>gi|189424313|ref|YP_001951490.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ]
 gi|229560034|sp|B3E790|RUVA_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189420572|gb|ACD94970.1| Holliday junction DNA helicase RuvA [Geobacter lovleyi SZ]
          Length = 200

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK------MISRSSPETLASIEGISK 597
             R R +K+ +  L  ++GIGP   R +L     ++       + +     L++I GI K
Sbjct: 61  GFRTRTEKSFFQLLISVSGIGPKLARDILS---NIQPPQLAAALQQGDLHKLSAIPGIGK 117

Query: 598 KIACKIYNHFHKNTS 612
           K A ++         
Sbjct: 118 KTAERLVLELKDKAG 132


>gi|94268846|ref|ZP_01291300.1| DNA repair protein RadC [delta proteobacterium MLMS-1]
 gi|94270555|ref|ZP_01291766.1| DNA repair protein RadC [delta proteobacterium MLMS-1]
 gi|93450762|gb|EAT01820.1| DNA repair protein RadC [delta proteobacterium MLMS-1]
 gi|93451446|gb|EAT02288.1| DNA repair protein RadC [delta proteobacterium MLMS-1]
          Length = 243

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIA 600
           R LL  F G+   +  +S   L  ++G+  K A
Sbjct: 53  RNLLARFDGSFSQVLDASQAELEQVKGVGPKNA 85


>gi|330722364|gb|EGH00218.1| DNA ligase [gamma proteobacterium IMCC2047]
          Length = 394

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 550 KKAAYSPL------DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           +K+  + L        I  +G      L   F  +  + ++  E L  +  +   +A  I
Sbjct: 222 QKSKQTTLARFIYALGIREVGEATAANLAHHFADLGALMQAKEEQLLEVNDVGPIVASHI 281

Query: 604 YNHFHK 609
            + F +
Sbjct: 282 AHFFQQ 287


>gi|326334401|ref|ZP_08200613.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325693368|gb|EGD35295.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 670

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    +   + + T++    ++ E L  I+ I  +IA  +   F
Sbjct: 517 VGETVAKKFARIYKTLEAFRSATYEQLTQIDEIGDRIAQSVIEFF 561


>gi|319953068|ref|YP_004164335.1| DNA protecting protein dpra [Cellulophaga algicola DSM 14237]
 gi|319421728|gb|ADV48837.1| DNA protecting protein DprA [Cellulophaga algicola DSM 14237]
          Length = 367

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
            L  I  IG +  + L+   G    +     + L  I+GI       + +  H+ T+   
Sbjct: 11  KLQRIPNIGDVTAKKLISHCGNPNAVFEEKNQNLLKIDGIGTHTIRHLNDKIHQETAEAE 70


>gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519]
 gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii]
          Length = 888

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+++ I   + + ++ 
Sbjct: 199 DNIPGVAGIGEKTGIKLLKEYGSIENIYM-NIDEISK 234


>gi|309805335|ref|ZP_07699385.1| comEA protein [Lactobacillus iners LactinV 09V1-c]
 gi|309809259|ref|ZP_07703128.1| comEA protein [Lactobacillus iners SPIN 2503V10-D]
 gi|312873936|ref|ZP_07733972.1| comEA protein [Lactobacillus iners LEAF 2052A-d]
 gi|325911492|ref|ZP_08173903.1| comEA protein [Lactobacillus iners UPII 143-D]
 gi|308165335|gb|EFO67568.1| comEA protein [Lactobacillus iners LactinV 09V1-c]
 gi|308170372|gb|EFO72396.1| comEA protein [Lactobacillus iners SPIN 2503V10-D]
 gi|311090485|gb|EFQ48893.1| comEA protein [Lactobacillus iners LEAF 2052A-d]
 gi|325476692|gb|EGC79847.1| comEA protein [Lactobacillus iners UPII 143-D]
          Length = 210

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 556 PLDEINGIGPLRKRLLLQ---SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +++GIG  R   +++     G  K     S + L  + GI  K   K+  H 
Sbjct: 159 ELQKLSGIGQKRAEQIIECRERIGGFK-----SIDDLKQVSGIGVKTIEKLKPHL 208


>gi|309803976|ref|ZP_07698059.1| comEA protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163978|gb|EFO66242.1| comEA protein [Lactobacillus iners LactinV 11V1-d]
          Length = 210

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ---SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L +++GIG  R   +++     G  K     S + L  + GI  K   K+  H 
Sbjct: 155 ATAQELQKLSGIGQKRAEQIIECRERIGGFK-----SIDDLKQVSGIGVKTIEKLKPHL 208


>gi|291458840|ref|ZP_06598230.1| endonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418094|gb|EFE91813.1| endonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 231

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 570 LLLQSFGTVKMISRSSPETLASIE---GISKKIACKI 603
            L + F TV+ I+ +SPE +  I    G+ +  A  I
Sbjct: 70  KLYEKFPTVEAIAAASPEEIEEIVRPCGLGRSKARDI 106


>gi|218778342|ref|YP_002429660.1| DNA repair protein RadC [Desulfatibacillum alkenivorans AK-01]
 gi|218759726|gb|ACL02192.1| DNA repair protein RadC [Desulfatibacillum alkenivorans AK-01]
          Length = 265

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 5/26 (19%), Positives = 13/26 (50%)

Query: 573 QSFGTVKMISRSSPETLASIEGISKK 598
             FG++K +  +  + L  ++G+   
Sbjct: 74  DHFGSLKAVLAADKDDLQKVKGLGPA 99


>gi|259500693|ref|ZP_05743595.1| competence protein CelA [Lactobacillus iners DSM 13335]
 gi|315653472|ref|ZP_07906393.1| competence protein CelA [Lactobacillus iners ATCC 55195]
 gi|259168077|gb|EEW52572.1| competence protein CelA [Lactobacillus iners DSM 13335]
 gi|315489163|gb|EFU78804.1| competence protein CelA [Lactobacillus iners ATCC 55195]
          Length = 213

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ---SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L +++GIG  R   +++     G  K     S + L  + GI  K   K+  H 
Sbjct: 158 ATAQELQKLSGIGQKRAEQIIECRERIGGFK-----SIDDLKQVSGIGVKTIEKLKPHL 211


>gi|257458169|ref|ZP_05623323.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
 gi|257444463|gb|EEV19552.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
          Length = 641

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +I GIG      L+ + F T++ +  +S E  A++      +A  +     +    
Sbjct: 489 DIEGIGRTMMEKLVDAGFDTLEKLLAASEEDFAAVYQFGSVLAHTLTAGLREVKDE 544


>gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 914

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IG  +   +   + +++ I   + + L SI+GI   +   + N
Sbjct: 190 DGIPGVTKIGEKKALAIFSQYDSLEKIYE-NIDNLKSIDGIGPSLIKNLIN 239


>gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
 gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
          Length = 971

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLAS 591
            I GIGP     LL+ +GT++  + R++   +  
Sbjct: 198 GIPGIGPKTAAQLLEEYGTLEELLERAT--EIKQ 229


>gi|89052777|ref|YP_508228.1| DNA repair protein RadC [Jannaschia sp. CCS1]
 gi|88862326|gb|ABD53203.1| DNA repair protein RadC [Jannaschia sp. CCS1]
          Length = 257

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 19/80 (23%)

Query: 536 EAHRFAITTHRKR-RKKAAYSPLDEINGI--------GPLRK-------RLLLQSFGTVK 579
           EAHR     HR R R++      D +           G + +       + L+  FG + 
Sbjct: 35  EAHRH---KHRDRLRQRFTDGGADAVPDYELLEMVLYGAILRGDTKPLAKRLIDRFGDLN 91

Query: 580 MISRSSPETLASIEGISKKI 599
            +  +    L  +EG+  K+
Sbjct: 92  RVLAAPVARLKEVEGVGDKV 111


>gi|158315953|ref|YP_001508461.1| 5'-3' exonuclease [Frankia sp. EAN1pec]
 gi|158111358|gb|ABW13555.1| 5'-3' exonuclease [Frankia sp. EAN1pec]
          Length = 318

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  FG+++ I  +
Sbjct: 208 LPGVAGIGAKTAAALLGRFGSLRAILTA 235


>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
 gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
          Length = 872

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I GI   G      LL+ FG+V+ +     + L+ ++G   KI   I
Sbjct: 187 DNIPGIPNIGEKTAIKLLKEFGSVENL----LQNLSQLKG---KIKENI 228


>gi|312128297|ref|YP_003993171.1| DNA repair protein radc [Caldicellulosiruptor hydrothermalis 108]
 gi|311778316|gb|ADQ07802.1| DNA repair protein RadC [Caldicellulosiruptor hydrothermalis 108]
          Length = 230

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ +FG++  +  + P+ L  ++G+ +  A  I
Sbjct: 50  RLISTFGSISNVFEAHPKELQKVKGVGENSAILI 83


>gi|302191383|ref|ZP_07267637.1| competence protein [Lactobacillus iners AB-1]
 gi|312872294|ref|ZP_07732364.1| comEA protein [Lactobacillus iners LEAF 2062A-h1]
 gi|311092117|gb|EFQ50491.1| comEA protein [Lactobacillus iners LEAF 2062A-h1]
          Length = 210

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ---SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L +++GIG  R   +++     G  K     S + L  + GI  K   K+  H 
Sbjct: 155 ATAQELQKLSGIGQKRAEQIIECRERIGGFK-----SIDDLKQVSGIGVKTIEKLKPHL 208


>gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLISEFGSIENLLE 220


>gi|292654904|ref|YP_003534801.1| DNA polymerase X [Haloferax volcanii DS2]
 gi|291371449|gb|ADE03676.1| DNA polymerase X [Haloferax volcanii DS2]
          Length = 582

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYN 605
           L  + G+GP     L ++ G   +  +  ++ +  +  ++G   K    I +
Sbjct: 95  LTSVEGVGPKTVGKLYEALGVSDLDDLEAAARDGEIQEVKGFGAKTETNILD 146


>gi|292654846|ref|YP_003534743.1| DNA topoisomerase I [Haloferax volcanii DS2]
 gi|291370931|gb|ADE03158.1| DNA topoisomerase I [Haloferax volcanii DS2]
          Length = 840

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMIS--RSSP-ETL-ASIEGISKKIACK 602
           S L+ INGIG      L  +   ++ +   ++S  + + A +EG+      K
Sbjct: 785 SELESINGIGAKTAEKLKDA--GIEDVKTLKASEPDDIAAKVEGVGADTVRK 834


>gi|215487293|ref|YP_002329724.1| hypothetical protein E2348C_2213 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967304|ref|ZP_07781520.1| uncharacterized protein yegI [Escherichia coli 2362-75]
 gi|168986454|dbj|BAG11992.1| conserved predicted protein [Escherichia coli O55:H6]
 gi|215265365|emb|CAS09761.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
 gi|312288112|gb|EFR16016.1| uncharacterized protein yegI [Escherichia coli 2362-75]
          Length = 646

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 22/85 (25%)

Query: 549 RKKAAYSPLD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKI 599
           R++     L+        I G+GP RK  L +SFG  T   ++R S      ++G    +
Sbjct: 503 RERQKQKFLEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHL 558

Query: 600 ACKIYNH---------FHKNTSHTP 615
              + +          F  N + TP
Sbjct: 559 TQAVIDWKASCERRFVFRPNEAITP 583


>gi|9632727|ref|NP_049840.1| DenA endonuclease II [Enterobacteria phage T4]
 gi|116326445|ref|YP_803165.1| endonuclease II restricts dC-DNA [Enterobacteria phage RB32]
 gi|729416|sp|P07059|END2_BPT4 RecName: Full=Endonuclease II
 gi|5354351|gb|AAD42558.1|AF158101_145 DenA endonuclease II [Enterobacteria phage T4]
 gi|115344038|gb|ABI95047.1| endonuclease II restricts dC-DNA [Enterobacteria phage RB32]
 gi|299780588|gb|ADJ39950.1| endonuclease II [Enterobacteria phage T4T]
          Length = 144

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 22/93 (23%)

Query: 19  AGRVLYVGKAYNLQKRIKSYMHSNNHTHRI-----THMISQI----NNIRFT-------- 61
              ++Y+GK  NL+KRI  Y  + N   +      + +I       + + F         
Sbjct: 50  NDELVYIGKTKNLRKRINYYRTAINRKDKTSDSTKSALIHSALKEGSKVEFYARQCFNLS 109

Query: 62  ---VTCTEVEALL-LEANM-IKRLKPRFNILLR 89
                 T   A + LE  + IK   P +NI  +
Sbjct: 110 MTNELGTMTIATIDLEEPLFIKLFNPPWNIQHK 142


>gi|330835833|ref|YP_004410561.1| ERCC4 domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329567972|gb|AEB96077.1| ERCC4 domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 228

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            +  +G      LL+ F TV+ +   +      I G S+K A  +Y   +
Sbjct: 161 SLPQVGVKTASKLLKEFSTVRNMCNGNIADFEKILG-SRKKAELLYKILN 209


>gi|283769122|ref|ZP_06342027.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219]
 gi|283104308|gb|EFC05686.1| Holliday junction DNA helicase RuvA [Bulleidia extructa W1219]
          Length = 192

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTV---KMISRSSPETLASIEGISKKIACKI 603
           K  +  L  + G+GP     +LQ  G     + IS+     L  + GI  K A +I
Sbjct: 66  KTLFLNLISVKGLGPKTAMTMLQKSGYALITEAISKGDVAALKKLPGIGAKSASQI 121


>gi|222528576|ref|YP_002572458.1| DNA repair protein RadC [Caldicellulosiruptor bescii DSM 6725]
 gi|312623124|ref|YP_004024737.1| DNA repair protein radc [Caldicellulosiruptor kronotskyensis 2002]
 gi|222455423|gb|ACM59685.1| DNA repair protein RadC [Caldicellulosiruptor bescii DSM 6725]
 gi|312203591|gb|ADQ46918.1| DNA repair protein RadC [Caldicellulosiruptor kronotskyensis 2002]
          Length = 232

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ +FG++  +  + P+ L  ++G+ +  A  I
Sbjct: 52  RLISTFGSISNVFEAHPKELQKVKGVGENSAILI 85


>gi|328887795|emb|CAJ70206.2| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Clostridium
           difficile]
          Length = 674

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L  +F  +  +  ++ E L  +E     +A  +   F ++ +
Sbjct: 508 GIKFIGVKAAKILAYNFKDLDEVISATSEQLEELEEFGSIMANSVVEFFKEDKN 561


>gi|309789628|ref|ZP_07684209.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6]
 gi|308228364|gb|EFO82011.1| Holliday junction DNA helicase RuvA [Oscillochloris trichoides DG6]
          Length = 198

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS----RSSPETLASIEGISKKIACKI 603
           ++A +  L  ++G+GP     LL + G+   I     +++   LA + GI KK A ++
Sbjct: 68  QRALFESLLSVSGVGPKVGLSLLSA-GSPDDIRLMVAQNNTTALARVPGIGKKTAERL 124


>gi|303232470|ref|ZP_07319159.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
 gi|302481435|gb|EFL44506.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
          Length = 836

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           G++  +  + P  +ASI+G+  KIA  ++   
Sbjct: 687 GSLSQLMAAQPTEIASIDGVGPKIAESVHKFL 718


>gi|302391938|ref|YP_003827758.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302204015|gb|ADL12693.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 313

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 12 VYQMLDIAGRVLYVGKAY--NLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEA 69
          +Y++ +    ++Y+G+     ++ RI+++  +    +  +     I    +       E 
Sbjct: 3  IYRLYNKDKEIIYIGRTKLERIELRIRTHFSNYKKYNLDSFWRKNIRYYDYAKVNNNYEL 62

Query: 70 LLLEANMIKRLKP------RFN 85
           + E   I +  P      +FN
Sbjct: 63 AMYEIFYINKYNPCNNKENKFN 84


>gi|294790877|ref|ZP_06756035.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304]
 gi|294458774|gb|EFG27127.1| holliday junction DNA helicase RuvA [Scardovia inopinata F0304]
          Length = 209

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYN 605
            K  +  L +++GIGP     +L +  + + ++ +        L    G+ +K A KI  
Sbjct: 67  SKKLFIQLQKVSGIGPRVAMAILSTL-SAEELATAIRDNDVTALTRAPGLGRKGAQKIIL 125

Query: 606 HFH 608
             H
Sbjct: 126 ELH 128


>gi|241766520|ref|ZP_04764384.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN]
 gi|241363253|gb|EER58812.1| Holliday junction DNA helicase RuvA [Acidovorax delafieldii 2AN]
          Length = 190

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACK 602
            L +I+G+GP     +L   G V  ++++ + +    L  + GI KK A +
Sbjct: 74  ELIKISGVGPRTALSILSGMG-VGDLAQAITLQEAGRLVKVPGIGKKTAER 123


>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
          Length = 962

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 19/72 (26%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEG-----------ISKKIACKI 603
           D I GI   G      LL  + T++ I  ++ +T+    G           +SKK+A  I
Sbjct: 191 DNIPGIRGVGEKTAAKLLAEYETLENIL-ANADTIKGSLGEKIRAGKEDAIMSKKLATII 249

Query: 604 YN----HFHKNT 611
            +     FH+  
Sbjct: 250 TDIPAAIFHEED 261


>gi|188585101|ref|YP_001916646.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|254781378|sp|B2A5W5|DNLJ_NATTJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|179349788|gb|ACB84058.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 663

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 563 IGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +G  R   LL   F  +  + ++  E L  I  I  ++A  I + F 
Sbjct: 515 VG-KRAAQLLAFEFEHLDNLMKAQIEDLTKINDIGPRMATSIVSFFQ 560



 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +I G+G      L        V  I   +   L+++EG   K A  +     ++  + 
Sbjct: 445 DIEGLGEKVVEKLYSHGLIKDVADIYYLAKNELSNLEGFGDKSAENLLQAIEESKKNP 502


>gi|254976908|ref|ZP_05273380.1| DNA ligase [Clostridium difficile QCD-66c26]
 gi|255308381|ref|ZP_05352552.1| DNA ligase [Clostridium difficile ATCC 43255]
 gi|255316048|ref|ZP_05357631.1| DNA ligase [Clostridium difficile QCD-76w55]
 gi|255518705|ref|ZP_05386381.1| DNA ligase [Clostridium difficile QCD-97b34]
 gi|255651827|ref|ZP_05398729.1| DNA ligase [Clostridium difficile QCD-37x79]
 gi|306521614|ref|ZP_07407961.1| DNA ligase [Clostridium difficile QCD-32g58]
          Length = 674

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L  +F  +  +  ++ E L  +E     +A  +   F ++ +
Sbjct: 508 GIKFIGVKAAKILAYNFKDLDEVISATSEQLEELEEFGSIMANSVVEFFKEDKN 561


>gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
 gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
          Length = 875

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            + GIG      LLQ++G+++ I     + L 
Sbjct: 193 GVPGIGDKTAAKLLQTYGSLEGIYE-HVDDLK 223


>gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
 gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
          Length = 875

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            + GIG      LLQ++G+++ I     + L 
Sbjct: 193 GVPGIGDKTAAKLLQTYGSLEGIYE-HVDDLK 223


>gi|312892247|ref|ZP_07751743.1| DNA replication and repair protein RadC [Mucilaginibacter paludis
           DSM 18603]
 gi|311295222|gb|EFQ72395.1| DNA replication and repair protein RadC [Mucilaginibacter paludis
           DSM 18603]
          Length = 232

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 569 RLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHF 607
           + +L  +   +  + ++S   L   +GI +  A  I    
Sbjct: 55  KRILHHYKNDLNALGKASVAELCKFKGIGEAKAISIVAAL 94


>gi|300119443|ref|ZP_07057043.1| hypothetical protein BCSJ1_26203 [Bacillus cereus SJ1]
 gi|298723175|gb|EFI64017.1| hypothetical protein BCSJ1_26203 [Bacillus cereus SJ1]
          Length = 126

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1  MSSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINN 57
          +  +QMP+  GVY  L      LYVG++ N++ RI  +      THR+     +I  
Sbjct: 29 LLPKQMPKA-GVYL-LSEGNEYLYVGRSNNIRGRIGRH-SRPGATHRMAAFAFRIAR 82


>gi|260684853|ref|YP_003216138.1| DNA ligase [Clostridium difficile CD196]
 gi|260688511|ref|YP_003219645.1| DNA ligase [Clostridium difficile R20291]
 gi|260211016|emb|CBA66332.1| DNA ligase [Clostridium difficile CD196]
 gi|260214528|emb|CBE07046.1| DNA ligase [Clostridium difficile R20291]
          Length = 677

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L  +F  +  +  ++ E L  +E     +A  +   F ++ +
Sbjct: 511 GIKFIGVKAAKILAYNFKDLDEVISATSEQLEELEEFGSIMANSVVEFFKEDKN 564


>gi|255102476|ref|ZP_05331453.1| DNA ligase [Clostridium difficile QCD-63q42]
          Length = 674

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L  +F  +  +  ++ E L  +E     +A  +   F ++ +
Sbjct: 508 GIKFIGVKAAKILAYNFKDLDEVISATSEQLEELEEFGSIMANSVVEFFKEDKN 561


>gi|254477756|ref|ZP_05091142.1| DNA repair protein RadC [Ruegeria sp. R11]
 gi|214031999|gb|EEB72834.1| DNA repair protein RadC [Ruegeria sp. R11]
          Length = 251

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           R+LL  FG    +  + PE LA + GI + +
Sbjct: 75  RMLLDRFGDFNRVITAPPERLAQVPGIGEAV 105


>gi|297740939|emb|CBI31251.3| unnamed protein product [Vitis vinifera]
          Length = 220

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 542 ITTHRKRRKKAAYS------PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           I+  R  RKK+          +  I GI       L Q+ G++K I+++S + +     +
Sbjct: 137 ISKLRAERKKSVQGMDVFLRVITSIPGIDNHDANSLNQAIGSIKAIAKASKDYILENTDL 196

Query: 596 SKKIACKIYNHFH 608
           S   A  I   F 
Sbjct: 197 SSDKAETITRFFR 209


>gi|126700928|ref|YP_001089825.1| DNA ligase [Clostridium difficile 630]
 gi|123362868|sp|Q180F3|DNLJ_CLOD6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 677

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    ++L  +F  +  +  ++ E L  +E     +A  +   F ++ +
Sbjct: 511 GIKFIGVKAAKILAYNFKDLDEVISATSEQLEELEEFGSIMANSVVEFFKEDKN 564


>gi|332637228|ref|ZP_08416091.1| competence protein CelA [Weissella cibaria KACC 11862]
          Length = 225

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 8/47 (17%)

Query: 556 PLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKI 599
            L  + G+G  R + ++   ++ G  K     + + L  + GI +K 
Sbjct: 174 ELQTLPGVGEKRAQDIVTQRETMGGFK-----TVDDLQEVAGIGEKT 215


>gi|317014289|gb|ADU81725.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           Gambia94/24]
          Length = 183

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|297529317|ref|YP_003670592.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. C56-T3]
 gi|297252569|gb|ADI26015.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. C56-T3]
          Length = 207

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L ++ GIGP + + ++      G  + +     E L ++ GI +K   K+  + 
Sbjct: 151 ATEEELMQLPGIGPAKAKAIIAYREEHGPFRRV-----EDLLNVTGIGEKTLEKLKPYL 204


>gi|281337435|gb|EFB13019.1| hypothetical protein PANDA_013590 [Ailuropoda melanoleuca]
          Length = 260

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISK 597
           + LL +FG+++ +  +S E LA   G+  
Sbjct: 219 QTLLTTFGSLEQLMAASREDLALCPGLGP 247


>gi|256377071|ref|YP_003100731.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
 gi|255921374|gb|ACU36885.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
          Length = 674

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           FG+++ ++ +  E L  +E I  K+A  +  H 
Sbjct: 524 FGSLEEVADAGEERLVEVEDIGPKVAASLTEHL 556


>gi|167761341|ref|ZP_02433468.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704]
 gi|167661007|gb|EDS05137.1| hypothetical protein CLOSCI_03749 [Clostridium scindens ATCC 35704]
          Length = 649

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKI 603
           KA  + L        I  IG    +++ + F   ++ + +++ E L +I GI + IA   
Sbjct: 476 KARTTTLPRVIYGLGIANIGLANAKMICKEFQYDLEAMLKATVEELNAISGIGEVIATAF 535

Query: 604 YNHFHKN 610
            ++F  N
Sbjct: 536 VDYFSDN 542


>gi|317182188|dbj|BAJ59972.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F57]
          Length = 183

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|317177676|dbj|BAJ55465.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F16]
          Length = 183

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|297849664|ref|XP_002892713.1| hypothetical protein ARALYDRAFT_471432 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338555|gb|EFH68972.1| hypothetical protein ARALYDRAFT_471432 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 250

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  I       L Q+ G+++ I+++S E + +   +S + A  +   F 
Sbjct: 190 SIPNINKHDANTLYQAIGSIEAIAKASKEDILANTDLSSEKAETLTRFFQ 239


>gi|295397226|ref|ZP_06807325.1| DNA repair protein RadC [Aerococcus viridans ATCC 11563]
 gi|294974535|gb|EFG50263.1| DNA repair protein RadC [Aerococcus viridans ATCC 11563]
          Length = 241

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            ++Q FGT   +  +S   L  + G+    A +I
Sbjct: 65  KIIQHFGTRYDLRTASYHDLIQLPGVGPAKAVEI 98


>gi|219871499|ref|YP_002475874.1| holliday junction DNA helicase motor protein [Haemophilus parasuis
           SH0165]
 gi|219691703|gb|ACL32926.1| holliday junction DNA helicase motor protein [Haemophilus parasuis
           SH0165]
          Length = 171

 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET 588
           +R++AH    F      +++++  +  L + NG+GP     +L +  +V     +   E 
Sbjct: 22  IREDAHLLFGFV-----QKQERMLFRELIKTNGVGPKLALAILSAM-SVSEFMSAIEQEE 75

Query: 589 LAS---IEGISKKIACKIYNHFH 608
           LA    I GI +K A ++     
Sbjct: 76  LAKLIKIPGIGRKTAERLLVELK 98


>gi|317150241|ref|XP_001823894.2| DNA repair protein RAD1 [Aspergillus oryzae RIB40]
          Length = 955

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           L  + G+ P     L+   G +  I+  + E L  + GI  + A KI N F K+
Sbjct: 899 LRAVPGVTPSVLERLILETGNISEIANMTVEQLDPLVGI--EAARKIVNFFQKS 950


>gi|311894864|dbj|BAJ27272.1| putative Holliday junction ATP-dependent DNA helicase RuvA
           [Kitasatospora setae KM-6054]
          Length = 203

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL-QSFGTVKMISRS----SPETLASIEGISKKIACKIY 604
           +A +  L    G+GP   + +L     + + +  +      + L ++ GI K  A K+ 
Sbjct: 68  RATFEVLQAAPGVGPKLAQAILGTH--SPEALRVAIAGGDEKALIAVPGIGKAKAAKLL 124


>gi|319761299|ref|YP_004125236.1| holliday junction DNA helicase ruva [Alicycliphilus denitrificans
           BC]
 gi|330823173|ref|YP_004386476.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           K601]
 gi|317115860|gb|ADU98348.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           BC]
 gi|329308545|gb|AEB82960.1| Holliday junction DNA helicase RuvA [Alicycliphilus denitrificans
           K601]
          Length = 190

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACK 602
            L +++G+GP     +L   G V  ++++ S +    L  + GI KK A +
Sbjct: 74  ELIKVSGVGPRTALSILSGLG-VADLAQAVSLQEAGRLVKVPGIGKKTAER 123


>gi|296133059|ref|YP_003640306.1| transcriptional regulator, MarR family [Thermincola sp. JR]
 gi|296031637|gb|ADG82405.1| transcriptional regulator, MarR family [Thermincola potens JR]
          Length = 359

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           L  + GIGP R  LL+  FG+ K + ++ P  L  I+ I  K 
Sbjct: 10  LSRLPGIGPRRLELLISYFGSAKEVWQAKPSLLYCIKEIPTKT 52


>gi|261838266|gb|ACX98032.1| Holliday junction DNA helicase [Helicobacter pylori 51]
          Length = 183

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|238499435|ref|XP_002380952.1| DNA repair protein RAD1, putative [Aspergillus flavus NRRL3357]
 gi|220692705|gb|EED49051.1| DNA repair protein RAD1, putative [Aspergillus flavus NRRL3357]
          Length = 978

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           L  + G+ P     L+   G +  I+  + E L  + GI  + A KI N F K+
Sbjct: 922 LRAVPGVTPSVLERLILETGNISEIANMTVEQLDPLVGI--EAARKIVNFFQKS 973


>gi|58337145|ref|YP_193730.1| competence protein [Lactobacillus acidophilus NCFM]
 gi|227903721|ref|ZP_04021526.1| competence protein comEA [Lactobacillus acidophilus ATCC 4796]
 gi|58254462|gb|AAV42699.1| competence protein [Lactobacillus acidophilus NCFM]
 gi|227868608|gb|EEJ76029.1| competence protein comEA [Lactobacillus acidophilus ATCC 4796]
          Length = 227

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 555 SPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L ++ GIG  +   ++      G+ + I     E L  + GI +K    + +  
Sbjct: 175 TELQKLTGIGEKKAEQIIAYREQNGSFQKI-----EDLMQVSGIGEKTFASLKDQL 225


>gi|317180262|dbj|BAJ58048.1| Holliday junction DNA helicase motor protein [Helicobacter pylori
           F32]
          Length = 183

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|312878119|ref|ZP_07738052.1| DNA repair protein RadC [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795101|gb|EFR11497.1| DNA repair protein RadC [Caldicellulosiruptor lactoaceticus 6A]
          Length = 232

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ +FG++  +  + P+ L  ++G+ +  A  I
Sbjct: 52  RLISTFGSISNVFEAHPKELQKVKGVGENSAILI 85


>gi|283956189|ref|ZP_06373674.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792343|gb|EFC31127.1| competence protein ComEA [Campylobacter jejuni subsp. jejuni 1336]
          Length = 79

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIACKIYN 605
           A    L  +N IG  + + +L+          +   S + L  ++GI  K+  KI N
Sbjct: 24  ATLKELKSLNSIGEAKAKAILEY------RKEANFTSIDDLKKVKGIGDKLFEKIKN 74


>gi|209962628|gb|ACJ02109.1| Taq DNA polymerase [Escherichia coli]
          Length = 306

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  + GIG    R LL+ +G+++ +       L +++ +   I  KI  H
Sbjct: 191 LPGVKGIGEKTARKLLEEWGSLEAL-------LKNLDRLKPAIREKILAH 233


>gi|134299518|ref|YP_001113014.1| Holliday junction DNA helicase RuvA [Desulfotomaculum reducens
           MI-1]
 gi|172044284|sp|A4J536|RUVA_DESRM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134052218|gb|ABO50189.1| Holliday junction DNA helicase subunit RuvA [Desulfotomaculum
           reducens MI-1]
          Length = 199

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNHFH 608
           L  + G+GP     ++        +  +        L  + G+ KK A +I     
Sbjct: 73  LLNVAGVGPKVALAVVSHLP-PSNLRSAIAIEDVNQLVKVPGVGKKTAQRILLELK 127


>gi|317374922|sp|Q013G9|FEN1_OSTTA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 389

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRS 584
           D I G+GP     L++  G+++ I  +
Sbjct: 237 DTIRGVGPKTALKLIKEHGSIEKILEA 263


>gi|296283428|ref|ZP_06861426.1| hypothetical protein CbatJ_07394 [Citromicrobium bathyomarinum
           JL354]
          Length = 236

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISK 597
           + LL  FG++  +  + P  LA   G+ +
Sbjct: 60  KALLARFGSLARVLEAEPAALAKTPGMGE 88


>gi|268325704|emb|CBH39292.1| probable DNA repair protein radC homolog [uncultured archaeon]
          Length = 330

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 550 KKAAYSPLDEI---NGI-GP---LRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACK 602
            K   S L  I   +GI G    +    LL  FG VK I  +    L  IEG+      +
Sbjct: 109 SKLTTSELLAIFLRSGIPGKSAIVIANDLLTQFGGVKGIFEADKAKLMDIEGVGAAKVAQ 168

Query: 603 IY-------NHFHKN 610
           I         +  ++
Sbjct: 169 IKAVQALAEEYLKES 183


>gi|225025741|ref|ZP_03714933.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
           23834]
 gi|224941522|gb|EEG22731.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
           23834]
          Length = 778

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L  +FG +  + R+    LA +  I   +A  I ++F +
Sbjct: 542 GIRHVGESTAKQLAAAFGNLDTVRRAPEPILACLPDIGSVVAHAIAHYFRQ 592


>gi|328957257|ref|YP_004374643.1| membrane bound high-affinity DNA-binding receptor [Carnobacterium
           sp. 17-4]
 gi|328673581|gb|AEB29627.1| membrane bound high-affinity DNA-binding receptor [Carnobacterium
           sp. 17-4]
          Length = 200

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 556 PLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            L +++GIG  +   ++   +  G+ + I     E L ++ GI +K     +     N
Sbjct: 145 ELQQLSGIGEKKAEQIMIYRKENGSFQKI-----EDLKNVSGIGEKT----FEALRGN 193


>gi|317011094|gb|ADU84841.1| Holliday junction DNA helicase RuvA [Helicobacter pylori
           SouthAfrica7]
          Length = 183

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKKLQQVPGIGKKLADKI 123


>gi|317491787|ref|ZP_07950222.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920221|gb|EFV41545.1| Holliday junction DNA helicase RuvA [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 204

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++A +  L ++NG+GP     +L     Q F  V  I R    TL  + G+ KK A 
Sbjct: 65  NKQERALFRELIKVNGVGPKLALAILSGMSAQQF--VTAIEREEVSTLVKLPGVGKKTAE 122

Query: 602 KI 603
           ++
Sbjct: 123 RL 124


>gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
 gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
          Length = 903

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I G   IG  +  ++LQ +  ++ +     + L+ + GI K +   I
Sbjct: 190 DGIPGVRKIGSKKALVMLQKYKNLEGVYN-HIDELSDLPGIGKGLVKNI 237


>gi|268319676|ref|YP_003293332.1| competence protein ComEA [Lactobacillus johnsonii FI9785]
 gi|262398051|emb|CAX67065.1| competence protein ComEA [Lactobacillus johnsonii FI9785]
          Length = 228

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++NG+G  +   ++      G  K I     E L  + GI +K   K+ +  
Sbjct: 178 LQKLNGVGQKKAEQIIAYRDQNGGFKQI-----EDLTKVTGIGEKTFEKLKDQL 226


>gi|229105092|ref|ZP_04235743.1| DNA repair protein radC [Bacillus cereus Rock3-28]
 gi|228678273|gb|EEL32499.1| DNA repair protein radC [Bacillus cereus Rock3-28]
          Length = 225

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELISIHGVGIAKASQLMAAF 87


>gi|227889786|ref|ZP_04007591.1| possible competence protein ComEA [Lactobacillus johnsonii ATCC
           33200]
 gi|227849650|gb|EEJ59736.1| possible competence protein ComEA [Lactobacillus johnsonii ATCC
           33200]
          Length = 228

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++NG+G  +   ++      G  K I     E L  + GI +K   K+ +  
Sbjct: 178 LQKLNGVGQKKAEQIIAYRDQNGGFKQI-----EDLTKVTGIGEKTFEKLKDQL 226


>gi|241205543|ref|YP_002976639.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859433|gb|ACS57100.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 718

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 15/81 (18%)

Query: 541 AITTHRKRRKKAAYSPL--DEINGIGPLRKRLLLQSFGTVKMISRSSPE----------T 588
           AIT   +RR  A +  +    I  +G    +LL +S+GT      +  E           
Sbjct: 539 AIT---ERRSIALHRFIYALGIRHVGETTAKLLARSYGTYAAFETAMREAEALSGDAWND 595

Query: 589 LASIEGISKKIACKIYNHFHK 609
           L +IEGI + +A  I   + +
Sbjct: 596 LNAIEGIGEVVARAIVEFYKE 616


>gi|77917683|ref|YP_355498.1| DNA repair protein RadC [Pelobacter carbinolicus DSM 2380]
 gi|123575192|sp|Q3A8G4|Y065_PELCD RecName: Full=UPF0758 protein Pcar_0065
 gi|77543766|gb|ABA87328.1| DNA replication and repair protein RadC [Pelobacter carbinolicus
           DSM 2380]
          Length = 227

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +S LD+  G      RLL+Q F T++ ++ ++   L +I+GI    A ++   F
Sbjct: 44  HSALDQ--G------RLLIQQFDTLRQMATATTSELQAIKGIGPAKAAELQAVF 89


>gi|83772633|dbj|BAE62761.1| unnamed protein product [Aspergillus oryzae]
          Length = 896

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           L  + G+ P     L+   G +  I+  + E L  + GI  + A KI N F K+
Sbjct: 840 LRAVPGVTPSVLERLILETGNISEIANMTVEQLDPLVGI--EAARKIVNFFQKS 891


>gi|331658150|ref|ZP_08359112.1| putative chaperonin [Escherichia coli TA206]
 gi|331056398|gb|EGI28407.1| putative chaperonin [Escherichia coli TA206]
          Length = 649

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 22/89 (24%)

Query: 545 HRKRRKKAAYSPLD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGI 595
           H   R++     L+        I G+GP RK  L +SFG  T   ++R S      ++G 
Sbjct: 502 HDTARERQKQKFLEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGF 557

Query: 596 SKKIACKIYNH---------FHKNTSHTP 615
              +   + +          F  N + TP
Sbjct: 558 GDHLTQAVIDWKASCERRFVFRPNEAVTP 586


>gi|331647722|ref|ZP_08348814.1| putative chaperonin [Escherichia coli M605]
 gi|331043446|gb|EGI15584.1| putative chaperonin [Escherichia coli M605]
          Length = 649

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 22/89 (24%)

Query: 545 HRKRRKKAAYSPLD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGI 595
           H   R++     L+        I G+GP RK  L +SFG  T   ++R S      ++G 
Sbjct: 502 HDTARERQKQKFLEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGF 557

Query: 596 SKKIACKIYNH---------FHKNTSHTP 615
              +   + +          F  N + TP
Sbjct: 558 GDHLTQAVIDWKASCERRFVFRPNEAVTP 586


>gi|330911907|gb|EGH40417.1| putative chaperonin [Escherichia coli AA86]
          Length = 646

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 22/89 (24%)

Query: 545 HRKRRKKAAYSPLD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGI 595
           H   R++     L+        I G+GP RK  L +SFG  T   ++R S      ++G 
Sbjct: 499 HDTARERQKQKFLEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGF 554

Query: 596 SKKIACKIYNH---------FHKNTSHTP 615
              +   + +          F  N + TP
Sbjct: 555 GDHLTQAVIDWKASCERRFVFRPNEAVTP 583


>gi|328543235|ref|YP_004303344.1| DNA repair protein RadC [polymorphum gilvum SL003B-26A1]
 gi|326412981|gb|ADZ70044.1| DNA repair protein RadC [Polymorphum gilvum SL003B-26A1]
          Length = 236

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + LL  FG+   +  +    LA ++GI  ++A  + 
Sbjct: 60  KDLLTRFGSFAQVLAAPRARLAEVKGIGDQVADDLK 95


>gi|320193358|gb|EFW67996.1| Putative chaperonin [Escherichia coli WV_060327]
          Length = 646

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 22/89 (24%)

Query: 545 HRKRRKKAAYSPLD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGI 595
           H   R++     L+        I G+GP RK  L +SFG  T   ++R S      ++G 
Sbjct: 499 HDTARERQKQKFLEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGF 554

Query: 596 SKKIACKIYNH---------FHKNTSHTP 615
              +   + +          F  N + TP
Sbjct: 555 GDHLTQAVIDWKASCERRFVFRPNEAVTP 583


>gi|317484766|ref|ZP_07943665.1| DNA repair protein RadC [Bilophila wadsworthia 3_1_6]
 gi|316923973|gb|EFV45160.1| DNA repair protein RadC [Bilophila wadsworthia 3_1_6]
          Length = 226

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 19/32 (59%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + LL  FG+++ +  + P  +  ++G+ + +A
Sbjct: 50  KELLSRFGSIRGVLDALPAEMQQVDGVGEGVA 81


>gi|222033836|emb|CAP76577.1| Uncharacterized protein yegI [Escherichia coli LF82]
 gi|312946693|gb|ADR27520.1| hypothetical protein NRG857_10525 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 646

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 22/89 (24%)

Query: 545 HRKRRKKAAYSPLD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGI 595
           H   R++     L+        I G+GP RK  L +SFG  T   ++R S      ++G 
Sbjct: 499 HDTARERQKQKFLEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGF 554

Query: 596 SKKIACKIYNH---------FHKNTSHTP 615
              +   + +          F  N + TP
Sbjct: 555 GDHLTQAVIDWKASCERRFVFRPNEAVTP 583


>gi|225852775|ref|YP_002733008.1| DNA repair protein RadC [Brucella melitensis ATCC 23457]
 gi|256263739|ref|ZP_05466271.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|254764429|sp|C0RJP6|Y1330_BRUMB RecName: Full=UPF0758 protein BMEA_A1330
 gi|225641140|gb|ACO01054.1| DNA repair protein RadC [Brucella melitensis ATCC 23457]
 gi|263093798|gb|EEZ17803.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326409305|gb|ADZ66370.1| DNA repair protein RadC [Brucella melitensis M28]
 gi|326539014|gb|ADZ87229.1| DNA repair protein RadC [Brucella melitensis M5-90]
          Length = 249

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + LL  FG++  +  +    +A I G    +A ++ 
Sbjct: 73  KALLNRFGSIAEVLTAPENLIAEIPGAGPTVALELK 108


>gi|218282253|ref|ZP_03488552.1| hypothetical protein EUBIFOR_01134 [Eubacterium biforme DSM 3989]
 gi|218216791|gb|EEC90329.1| hypothetical protein EUBIFOR_01134 [Eubacterium biforme DSM 3989]
          Length = 124

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 578 VKMIS-----RSSPETLASIEGISKKIACKIYNHFHKNT 611
           +K I       ++ E L ++ GI   IA +I ++   NT
Sbjct: 59  IKEIKLISLNSATSEELQTLPGIGPSIAQRIIDYRQGNT 97


>gi|114776910|ref|ZP_01451953.1| DNA repair protein RadC [Mariprofundus ferrooxydans PV-1]
 gi|114552996|gb|EAU55427.1| DNA repair protein RadC [Mariprofundus ferrooxydans PV-1]
          Length = 261

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + LL  FGT+  +  +    L  + GI +  A
Sbjct: 85  KSLLTRFGTLAGVFDAPLAELKEVHGIGEGGA 116


>gi|110642280|ref|YP_670010.1| hypothetical protein ECP_2110 [Escherichia coli 536]
 gi|300981671|ref|ZP_07175657.1| hypothetical protein HMPREF9553_01928 [Escherichia coli MS 200-1]
 gi|306814806|ref|ZP_07448968.1| hypothetical protein ECNC101_22232 [Escherichia coli NC101]
 gi|110343872|gb|ABG70109.1| hypothetical protein YegI [Escherichia coli 536]
 gi|300307472|gb|EFJ61992.1| hypothetical protein HMPREF9553_01928 [Escherichia coli MS 200-1]
 gi|305852200|gb|EFM52652.1| hypothetical protein ECNC101_22232 [Escherichia coli NC101]
          Length = 646

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 22/89 (24%)

Query: 545 HRKRRKKAAYSPLD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGI 595
           H   R++     L+        I G+GP RK  L +SFG  T   ++R S      ++G 
Sbjct: 499 HDTARERQKQKFLEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGF 554

Query: 596 SKKIACKIYNH---------FHKNTSHTP 615
              +   + +          F  N + TP
Sbjct: 555 GDHLTQAVIDWKASCERRFVFRPNEAVTP 583


>gi|254294403|ref|YP_003060426.1| hypothetical protein Hbal_2046 [Hirschia baltica ATCC 49814]
 gi|254042934|gb|ACT59729.1| hypothetical protein Hbal_2046 [Hirschia baltica ATCC 49814]
          Length = 144

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 6   MPECPGVYQMLDIAG----RVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFT 61
           +P  PG+Y  +        + LYVGKA +L  R+K +         +      +      
Sbjct: 28  LPSDPGIYIFVRRYFVFWLKPLYVGKAASLSGRLKGHEKWGRAWWDLGATERHVARF--- 84

Query: 62  VTCTEVEALLLEANMIKRLKPRFN 85
              TE+E   +E ++I+ LKP  N
Sbjct: 85  --STEIERRRVEEDLIRGLKPPMN 106


>gi|308806964|ref|XP_003080793.1| FEN-1 (ISS) [Ostreococcus tauri]
 gi|116059254|emb|CAL54961.1| FEN-1 (ISS) [Ostreococcus tauri]
          Length = 428

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRS 584
           D I G+GP     L++  G+++ I  +
Sbjct: 276 DTIRGVGPKTALKLIKEHGSIEKILEA 302


>gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98]
          Length = 877

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E L  + G  KK+  K+
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEAVY----ENLDQVSG--KKLKEKL 230


>gi|328554295|gb|AEB24787.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           amyloliquefaciens TA208]
 gi|328912691|gb|AEB64287.1| ComE operon protein 1 [Bacillus amyloliquefaciens LL3]
          Length = 204

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L +I G+ +K A  I  +
Sbjct: 144 NINTASLDELQAIPGVGQKKAEAIIAY 170


>gi|311069296|ref|YP_003974219.1| DNA repair protein RadC [Bacillus atrophaeus 1942]
 gi|310869813|gb|ADP33288.1| DNA repair protein RadC [Bacillus atrophaeus 1942]
          Length = 231

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            LL SF  ++++  +S E L+ I GI    A +I   
Sbjct: 56  RLLHSFEGLRLLKEASVEELSGISGIGLVKAVQILAA 92


>gi|299144862|ref|ZP_07037930.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|298515353|gb|EFI39234.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 151

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 9/46 (19%)

Query: 2  SSEQMPECPGVYQ-------MLDIAG--RVLYVGKAYNLQKRIKSY 38
             ++P   GVY         +   G  +V+Y+GKA ++++R+K +
Sbjct: 28 DLSEIPAKDGVYIIASPQTKFVYPKGMSKVIYIGKANSIRRRLKEH 73


>gi|297529274|ref|YP_003670549.1| helicase, RecD/TraA family [Geobacillus sp. C56-T3]
 gi|297252526|gb|ADI25972.1| helicase, RecD/TraA family [Geobacillus sp. C56-T3]
          Length = 786

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 561 NGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
            GIG      ++++ G   +  I R  P+TL  +  ++KK A ++Y+    +     T
Sbjct: 107 KGIGKKTAAAIVETLGENAIAAILR-DPKTLERVPKLTKKKAKQLYDALRAHEGLEQT 163


>gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20]
 gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20]
          Length = 881

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ I     + +  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKEYGSVEGIYE-HIDEMKK 229


>gi|255348459|ref|ZP_05380466.1| transcription elongation factor NusA [Chlamydia trachomatis 70]
 gi|255503001|ref|ZP_05381391.1| transcription elongation factor NusA [Chlamydia trachomatis 70s]
          Length = 434

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 572 LQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L+   + T++ I  +S   LAS+ GIS ++A KI  
Sbjct: 381 LEHAGYDTIRKILLASASELASVPGISLELAYKILE 416


>gi|237804446|ref|YP_002888600.1| transcription elongation factor NusA [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231272746|emb|CAX09650.1| N utilization substance protein A [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 434

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 572 LQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L+   + T++ I  +S   LAS+ GIS ++A KI  
Sbjct: 381 LEHAGYDTIRKILLASASELASVPGISLELAYKILE 416


>gi|227495913|ref|ZP_03926224.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Actinomyces urogenitalis DSM 15434]
 gi|226834529|gb|EEH66912.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Actinomyces urogenitalis DSM 15434]
          Length = 253

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L+++ GIGP     ++        F        ++ E L  + GI +     + +
Sbjct: 202 ALEDLPGIGPALAERIVSHRESHGPF--------ATVEDLLDVPGIGQAKLEALRD 249


>gi|188589352|ref|YP_001919647.1| DNA integrity scanning protein DisA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777748|ref|ZP_04820668.1| DNA integrity scanning protein DisA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|226729437|sp|B2UY85|DISA_CLOBA RecName: Full=DNA integrity scanning protein disA
 gi|188499633|gb|ACD52769.1| DNA integrity scanning protein DisA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082063|gb|EES47953.1| DNA integrity scanning protein DisA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 354

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
              L++ F  +  +  +  + L  +EGI +  A  I +   +
Sbjct: 302 IENLIKEFRELNSVIEADLDELDIVEGIGEARAKAIKDGLKR 343


>gi|42518927|ref|NP_964857.1| hypothetical protein LJ1001 [Lactobacillus johnsonii NCC 533]
 gi|41583213|gb|AAS08823.1| hypothetical protein LJ_1001 [Lactobacillus johnsonii NCC 533]
 gi|329667528|gb|AEB93476.1| putative competence protein [Lactobacillus johnsonii DPC 6026]
          Length = 227

 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++NG+G  +   ++      G  K I     E L  + GI +K   K+ +  
Sbjct: 177 LQKLNGVGQKKAEQIIAYRDQNGGFKQI-----EDLTKVTGIGEKTFEKLKDQL 225


>gi|297748226|gb|ADI50772.1| N utilization substance protein A [Chlamydia trachomatis D-EC]
 gi|297749106|gb|ADI51784.1| N utilization substance protein A [Chlamydia trachomatis D-LC]
          Length = 465

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 572 LQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L+   + T++ I  +S   LAS+ GIS ++A KI  
Sbjct: 412 LEHAGYDTIRKILLASASELASVPGISLELAYKILE 447


>gi|284162501|ref|YP_003401124.1| DNA repair and recombination protein RadA [Archaeoglobus profundus
           DSM 5631]
 gi|284012498|gb|ADB58451.1| DNA repair and recombination protein RadA [Archaeoglobus profundus
           DSM 5631]
          Length = 805

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
           L+++ G+G      L ++ + ++++I+ SSP  L+++  I +  A KI
Sbjct: 12  LEDLPGVGSAIAEKLREAGYDSIELIAVSSPAELSAVADIGEATALKI 59


>gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
          Length = 920

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            G+G      L+  FG++  +       LA    I  K+  K+ +H H
Sbjct: 194 PGVGEKTAAKLINEFGSIDEM-------LARTGEIKGKLREKVESHIH 234


>gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10]
 gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10]
          Length = 881

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ I     + +  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKEYGSVEGIYE-HIDEMKK 229


>gi|254520271|ref|ZP_05132327.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226914020|gb|EEH99221.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 742

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I+GIGP+  + ++  F   T+  I  +  E L  IEGI +K    IY  +
Sbjct: 88  IHGIGPITAKKIVDRFKEETLD-ILENHIERLQEIEGIGEKKFRIIYESY 136


>gi|290243040|ref|YP_003494710.1| ERCC4 domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945545|gb|ADC73243.1| ERCC4 domain protein [Thioalkalivibrio sp. K90mix]
          Length = 343

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           K      L+ + G+     + L   + T+  I  ++   L SIEGI  K
Sbjct: 285 KDQLAFVLEGLPGMSGSLAKRLAAHYDTIGQICNATDAELLSIEGIGPK 333


>gi|302023616|ref|ZP_07248827.1| competence protein [Streptococcus suis 05HAS68]
 gi|330832627|ref|YP_004401452.1| DNA uptake protein-like DNA-binding protein [Streptococcus suis
           ST3]
 gi|329306850|gb|AEB81266.1| DNA uptake protein-like DNA-binding protein [Streptococcus suis
           ST3]
          Length = 220

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 12/55 (21%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606
           L  I+GIG  R   ++           +     S + L ++ GI  K    I  +
Sbjct: 169 LQTISGIGAKRATDIIAY-------REANGGFKSVDDLNNVSGIGDKTMESIRPY 216


>gi|300172987|ref|YP_003772153.1| Holliday junction DNA Helicase RuvA [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887366|emb|CBL91334.1| holliday junction DNA helicase RuvA [Leuconostoc gasicomitatum LMG
           18811]
          Length = 196

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  ++ L  ++GIGP     +L S  +V  +  +        L    G+ KK A +I
Sbjct: 67  KILFNKLLNVSGIGPKSALAILASDDSV-GLVNAVANDDATYLTQFPGVGKKTAQQI 122


>gi|298676052|ref|YP_003727802.1| DNA repair and recombination protein RadA [Methanohalobium
           evestigatum Z-7303]
 gi|298289040|gb|ADI75006.1| DNA repair and recombination protein RadA [Methanohalobium
           evestigatum Z-7303]
          Length = 325

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           L++++ +GP   + L +S + +V+ I+ +SP  L+    I +  A KI N   ++ +
Sbjct: 6   LEDLDHVGPATAQKLRESGYNSVEAIAVASPTDLSLSADIGESAASKIINSARRSAN 62


>gi|261868502|ref|YP_003256424.1| Holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413834|gb|ACX83205.1| holliday junction DNA helicase RuvA [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 204

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET 588
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V   + +   E 
Sbjct: 53  VREDAHLLFGFA-----QKADRTLFRELIKTNGVGPKLALAILSAM-SVDEFAYAIEREE 106

Query: 589 LA---SIEGISKKIACKIYNHFHKNTSHTPT 616
           L+    I GI KK A ++            T
Sbjct: 107 LSRLVKIPGIGKKTAERLLVELKGKFKEVKT 137


>gi|261380488|ref|ZP_05985061.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
 gi|284796739|gb|EFC52086.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
          Length = 822

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    + L Q+FGT+  +  +    LA +  I   +A  I + F +     
Sbjct: 587 GIRHVGERTAKTLAQAFGTLGNVRHAPEPILACLPDIGTVVAHSIAHFFAQEAQQA 642


>gi|156845450|ref|XP_001645616.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
           70294]
 gi|317376167|sp|A7TJ59|FEN1_VANPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|156116281|gb|EDO17758.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 377

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMI 581
           D I G+GP+    L++ +G+++ I
Sbjct: 234 DSIKGVGPVTALKLIKEYGSLEKI 257


>gi|15612668|ref|NP_240971.1| DNA integrity scanning protein DisA [Bacillus halodurans C-125]
 gi|81788236|sp|Q9KGG0|DISA_BACHD RecName: Full=DNA integrity scanning protein disA
 gi|10172717|dbj|BAB03824.1| BH0105 [Bacillus halodurans C-125]
          Length = 357

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +I  +     R L+ SF  +  + R+  + L  +EGI +  A  I +  
Sbjct: 293 ILHKIPRLPATIVRNLVHSFENINDMLRADLKELDEVEGIGEARAKLIKDGL 344


>gi|223932395|ref|ZP_03624397.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Streptococcus suis 89/1591]
 gi|223898849|gb|EEF65208.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Streptococcus suis 89/1591]
          Length = 220

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 12/55 (21%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYNH 606
           L  I+GIG  R   ++           +     S + L ++ GI  K    I  +
Sbjct: 169 LQTISGIGAKRATDIIAY-------REANGGFKSVDDLNNVSGIGDKTMESIRPY 216


>gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
 gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
          Length = 881

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G   IG      LL+ +G+V+ I     + +  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKEYGSVEGIYE-HIDEMKK 229


>gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
 gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
          Length = 948

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   IG    + LL+ + ++  I  ++ + L 
Sbjct: 199 DGIKGVAGIGAKTAQKLLEQYDSIDNIL-ANVDQLK 233


>gi|238916192|ref|YP_002929709.1| exodeoxyribonuclease V [Eubacterium eligens ATCC 27750]
 gi|238871552|gb|ACR71262.1| exodeoxyribonuclease V [Eubacterium eligens ATCC 27750]
          Length = 640

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I GIG      ++++FG  T   I    PE LA I+GIS   A  I N  
Sbjct: 88  IKGIGEKMAERIVKTFGDDTF-RIMEEEPERLAEIKGISMSKAMDIANQL 136


>gi|229098927|ref|ZP_04229862.1| DNA repair protein radC [Bacillus cereus Rock3-29]
 gi|228684425|gb|EEL38368.1| DNA repair protein radC [Bacillus cereus Rock3-29]
          Length = 225

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI G+    A ++   F
Sbjct: 50  KILHHFDGLRMLKDATLEELISIHGVGIAKASQLMAAF 87


>gi|210135073|ref|YP_002301512.1| Holliday junction DNA helicase RuvA [Helicobacter pylori P12]
 gi|210133041|gb|ACJ08032.1| holliday junction DNA helicase [Helicobacter pylori P12]
          Length = 183

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
 gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
          Length = 966

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I GI   G      LL+ +G+++ I + + + + 
Sbjct: 205 DSIPGILGIGEKTAATLLKEYGSLEGIYQ-NLDQIK 239


>gi|166154318|ref|YP_001654436.1| transcription elongation factor NusA [Chlamydia trachomatis 434/Bu]
 gi|166155193|ref|YP_001653448.1| transcription elongation factor NusA [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335569|ref|ZP_07223813.1| transcription elongation factor NusA [Chlamydia trachomatis L2tet1]
 gi|2160697|gb|AAB58904.1| NusA [Chlamydia trachomatis]
 gi|165930306|emb|CAP03792.1| N utilization substance protein A [Chlamydia trachomatis 434/Bu]
 gi|165931181|emb|CAP06746.1| N utilization substance protein A [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 434

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 572 LQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L+   + T++ I  +S   LAS+ GIS ++A KI  
Sbjct: 381 LEHAGYDTIRKILLASASELASVPGISLELAYKILE 416


>gi|88608186|ref|YP_506123.1| DNA repair protein RadC [Neorickettsia sennetsu str. Miyayama]
 gi|88600355|gb|ABD45823.1| DNA repair protein RadC [Neorickettsia sennetsu str. Miyayama]
          Length = 236

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           + LL+ FG  K +  + P+ L S+ G+S  +   I
Sbjct: 60  KSLLKEFGDFKKLFAADPDDLRSVNGVSDAVVALI 94


>gi|15604816|ref|NP_219600.1| transcription elongation factor NusA [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76788811|ref|YP_327897.1| transcription elongation factor NusA [Chlamydia trachomatis
           A/HAR-13]
 gi|237802529|ref|YP_002887723.1| transcription elongation factor NusA [Chlamydia trachomatis
           B/Jali20/OT]
 gi|255310899|ref|ZP_05353469.1| transcription elongation factor NusA [Chlamydia trachomatis 6276]
 gi|255317199|ref|ZP_05358445.1| transcription elongation factor NusA [Chlamydia trachomatis 6276s]
 gi|255506672|ref|ZP_05382311.1| transcription elongation factor NusA [Chlamydia trachomatis
           D(s)2923]
 gi|3328493|gb|AAC67688.1| Transcription antitermination factor [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76167341|gb|AAX50349.1| N utilization substance protein A [Chlamydia trachomatis A/HAR-13]
 gi|231273763|emb|CAX10544.1| N utilization substance protein A [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525141|emb|CBJ14613.1| N utilization substance protein A [Chlamydia trachomatis Sweden2]
 gi|296434685|gb|ADH16863.1| transcription elongation factor NusA [Chlamydia trachomatis E/150]
 gi|296435614|gb|ADH17788.1| transcription elongation factor NusA [Chlamydia trachomatis G/9768]
 gi|296436537|gb|ADH18707.1| transcription elongation factor NusA [Chlamydia trachomatis
           G/11222]
 gi|296437474|gb|ADH19635.1| transcription elongation factor NusA [Chlamydia trachomatis
           G/11074]
 gi|296438402|gb|ADH20555.1| transcription elongation factor NusA [Chlamydia trachomatis
           E/11023]
 gi|297139973|gb|ADH96731.1| transcription elongation factor NusA [Chlamydia trachomatis G/9301]
          Length = 434

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 572 LQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L+   + T++ I  +S   LAS+ GIS ++A KI  
Sbjct: 381 LEHAGYDTIRKILLASASELASVPGISLELAYKILE 416


>gi|309807246|ref|ZP_07701218.1| comEA protein [Lactobacillus iners LactinV 03V1-b]
 gi|308166384|gb|EFO68591.1| comEA protein [Lactobacillus iners LactinV 03V1-b]
          Length = 172

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 556 PLDEINGIGPLRKRLLLQ---SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L +++GIG  R   +++     G  K     S + L  + GI  K   K+  H 
Sbjct: 121 ELQKLSGIGQKRAEQIIECRERIGGFK-----SIDDLKQVSGIGVKTIEKLKPHL 170


>gi|294661389|ref|YP_003573265.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|254781251|sp|C3L496|DNLJ_AMOA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|227336540|gb|ACP21137.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 671

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G +    + Q +  +  +S ++ E L +I  I  +IA  + N+F    +
Sbjct: 514 GIRHVGEVIADKITQYYTDIDTLSNATVEDLIAIPFIGTEIAHSVTNYFENPEN 567


>gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
          Length = 1030

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + GIGP R   L+  +G+++ +       +A  + +S K+   + NH 
Sbjct: 259 GVPGIGPKRAAALIVEYGSLEGV-------IAHADQVSGKMGENLRNHI 300


>gi|319651627|ref|ZP_08005754.1| hypothetical protein HMPREF1013_02366 [Bacillus sp. 2_A_57_CT2]
 gi|317396694|gb|EFV77405.1| hypothetical protein HMPREF1013_02366 [Bacillus sp. 2_A_57_CT2]
          Length = 212

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 14/59 (23%)

Query: 555 SPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           S L  + GIGP +   +++       F             L  I GI +K   K+  H 
Sbjct: 159 SELQMLPGIGPSKAAAIIEHRETNGPFK--------DVADLKLISGIGEKTFEKLKEHI 209


>gi|311070735|ref|YP_003975658.1| DNA integrity scanning protein DisA [Bacillus atrophaeus 1942]
 gi|310871252|gb|ADP34727.1| DNA integrity scanning protein DisA [Bacillus atrophaeus 1942]
          Length = 360

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG +  I  +S E L  +EGI +  A KI     +
Sbjct: 315 FGVLPRIIEASAEELDDVEGIGEVRAQKIKKGLKR 349


>gi|260459829|ref|ZP_05808083.1| DNA repair protein RadC [Mesorhizobium opportunistum WSM2075]
 gi|259034631|gb|EEW35888.1| DNA repair protein RadC [Mesorhizobium opportunistum WSM2075]
          Length = 253

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + LL  FGT+  +  +    L  ++GI   +A
Sbjct: 77  KALLARFGTLAEVLGAPVGLLQEVKGIGPTVA 108


>gi|291456789|ref|ZP_06596179.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM
           20213]
 gi|291382066|gb|EFE89584.1| holliday junction DNA helicase RuvA [Bifidobacterium breve DSM
           20213]
          Length = 208

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYN 605
            K  +  L +++GIGP   + LL +  T   ++R+        LA   G+ KK A KI  
Sbjct: 67  SKKTFLQLIKVSGIGPKVAQSLLSTL-TAGQLARAIADNDAAALAKAPGLGKKGAQKIIL 125

Query: 606 HFHKNTS 612
               +  
Sbjct: 126 ELKGSID 132


>gi|121704028|ref|XP_001270278.1| DNA repair protein RAD1, putative [Aspergillus clavatus NRRL 1]
 gi|119398422|gb|EAW08852.1| DNA repair protein RAD1, putative [Aspergillus clavatus NRRL 1]
          Length = 977

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L  + G+ P     L+   G +  I+    E L     + ++ A KI   F K+   T
Sbjct: 921 LRAVPGVTPKVLERLILETGNINEIANMDVEQLD--PLVGREAARKIVGFFRKSVFET 976


>gi|110834601|ref|YP_693460.1| ComEA-like protein [Alcanivorax borkumensis SK2]
 gi|110647712|emb|CAL17188.1| ComEA-related protein [Alcanivorax borkumensis SK2]
          Length = 107

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 12/56 (21%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKIYN 605
           + L+++NG+GP   + ++           +     SP+ L +I+GI +K   K+ +
Sbjct: 54  TELEKLNGVGPKTAQAIIDF-------RNAQGGFTSPDQLLAIKGIGEKTLEKMRD 102


>gi|51891593|ref|YP_074284.1| putative DNA-binding protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51855282|dbj|BAD39440.1| putative DNA-binding protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 230

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 14/57 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L+ + GIGP   R ++        F +V        + L ++ GI  K   KI  +
Sbjct: 179 ELETVPGIGPALARAIITYRTEHGPFQSV--------DDLINVSGIGSKTLEKIRPY 227


>gi|31794763|ref|NP_857256.1| DNA integrity scanning protein DisA [Mycobacterium bovis AF2122/97]
 gi|121639506|ref|YP_979730.1| DNA integrity scanning protein DisA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224992003|ref|YP_002646692.1| hypothetical protein JTY_3652 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|81421357|sp|Q7TW52|DISA_MYCBO RecName: Full=DNA integrity scanning protein disA
 gi|166201839|sp|A1KPS2|DISA_MYCBP RecName: Full=DNA integrity scanning protein disA
 gi|254777854|sp|C1AI45|DISA_MYCBT RecName: Full=DNA integrity scanning protein disA
 gi|31620360|emb|CAD95803.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121495154|emb|CAL73640.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224775118|dbj|BAH27924.1| hypothetical protein JTY_3652 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 358

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L+++FGT++ +  +S   L S++GI    A  + +   +    T
Sbjct: 311 LVRAFGTLQGLLAASAGDLQSVDGIGAMWARHVRDGLSQLAEST 354


>gi|17547163|ref|NP_520565.1| DNA repair protein RadC [Ralstonia solanacearum GMI1000]
 gi|25009031|sp|Q8XWN0|Y2444_RALSO RecName: Full=UPF0758 protein RSc2444
 gi|17429465|emb|CAD16151.1| probable dna repair protein radc homolog [Ralstonia solanacearum
           GMI1000]
          Length = 224

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R LL  FG++  +  +S    ++I G+        Y   H
Sbjct: 48  RELLAHFGSLGRLCHASRREFSAIHGMGPAK----YAQLH 83


>gi|89899639|ref|YP_522110.1| PHP-like protein [Rhodoferax ferrireducens T118]
 gi|89344376|gb|ABD68579.1| PHP-like [Rhodoferax ferrireducens T118]
          Length = 580

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 22/84 (26%)

Query: 529 FIQRLRDE---AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISR 583
            +QRLR E        IT             L +I G+GP R R L +  G  T+  + +
Sbjct: 81  LLQRLRKELPPV----IT------------ELLKIPGLGPKRVRTLHRELGIETLAQLRQ 124

Query: 584 SSPE-TLASIEGISKKIACKIYNH 606
           ++ +  + S+ G   K   +I   
Sbjct: 125 AAEQGRVQSVHGFGAKSERQILEA 148


>gi|294341429|emb|CAZ89846.1| Holliday junction ATP-dependent DNA helicase ruvA [Thiomonas sp.
           3As]
          Length = 190

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 17/93 (18%)

Query: 520 LNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS 574
           L      +  +    +R++AH    FA        +++ +  L +I+GIGP     +L  
Sbjct: 38  LPAAGHAVTLLIHTVIREDAHLLYGFATAA-----ERSTFRELLKISGIGPRIALAVLS- 91

Query: 575 FG-TVKMISRS-SPET---LASIEGISKKIACK 602
            G +V  I+++ + +       + GI KK A +
Sbjct: 92  -GLSVSEIAQAVTQQDAVRFTRVPGIGKKTAER 123


>gi|134093406|ref|YP_001098481.1| putative nucleotide-binding protein involved in DNA uptake (Smf
           protein) [Herminiimonas arsenicoxydans]
 gi|133737309|emb|CAL60352.1| putative DNA protecting protein DprA [Herminiimonas arsenicoxydans]
          Length = 372

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L++  G+GP   R LL +FG  + I  ++   L  +  + ++IA  +  
Sbjct: 12  RLEQTPGVGPDTARKLLGAFGLPENIFAANFIALQQV--VPERIAHALLA 59


>gi|85859410|ref|YP_461612.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
 gi|123738818|sp|Q2LTN8|DNLJ_SYNAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|85722501|gb|ABC77444.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
          Length = 672

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G    ++L + F T+  +  ++   L +I  I  +++  I   F   ++
Sbjct: 520 GIRHVGEHISKILARRFRTLDALINTTENELLAIRDIGPEVSSSILEFFRNASN 573


>gi|313678741|ref|YP_004056481.1| 5'-3' exonuclease family protein [Mycoplasma bovis PG45]
 gi|312950734|gb|ADR25329.1| 5'-3' exonuclease family protein [Mycoplasma bovis PG45]
          Length = 305

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
               L  + GIGP +   LL  FG+++ I     E +  I G +K+     Y   H
Sbjct: 197 TSDRLKGVAGIGPKKAVSLLNEFGSLEAIY----ENIGKISGKTKEYLENDYESAH 248


>gi|268324987|emb|CBH38575.1| putative ski2-type helicase [uncultured archaeon]
          Length = 672

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L  I G+G +  R L  + F   + ++ +  E L  + G+  K A KI  
Sbjct: 615 RLVSIKGVGRIIARRLYSAGFRNEEEVANADLERLGGVHGVGAKRAAKIKE 665


>gi|152997408|ref|YP_001342243.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
 gi|190359264|sp|A6W0S9|DNLJ_MARMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|150838332|gb|ABR72308.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
          Length = 672

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 19/48 (39%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           +G    R L   F  +  +  +  ETL  +E +   +A  +   F + 
Sbjct: 519 VGEATARALTSYFTELDDLMAADQETLVEVEDVGPIVAQHVRLFFDQE 566


>gi|126739019|ref|ZP_01754713.1| hypothetical protein RSK20926_21504 [Roseobacter sp. SK209-2-6]
 gi|126719636|gb|EBA16344.1| hypothetical protein RSK20926_21504 [Roseobacter sp. SK209-2-6]
          Length = 204

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 559 EINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNH---FHKNTS 612
           E+ G+GP   + L +  G   + + ++ ++ E L  I GI    A  +      F ++  
Sbjct: 6   ELTGVGPALAKSLTK--GGLTSAEAVASATLEDLIRIPGIGAARAAGLMKAAEGFRESAP 63

Query: 613 HT 614
             
Sbjct: 64  PA 65


>gi|160896673|ref|YP_001562255.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1]
 gi|229560027|sp|A9BUG7|RUVA_DELAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|160362257|gb|ABX33870.1| Holliday junction DNA helicase RuvA [Delftia acidovorans SPH-1]
          Length = 190

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 556 PLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKIYNHFH 608
            L +I GIGP     +L   G +V+ ++++ + +    L  + GI KK A ++     
Sbjct: 74  ELIKITGIGPRMALSVLS--GMSVEDLAQAVTLQEVGRLVKVPGIGKKTAERLLLELK 129


>gi|108563288|ref|YP_627604.1| Holliday junction DNA helicase RuvA [Helicobacter pylori HPAG1]
 gi|123073768|sp|Q1CSZ2|RUVA_HELPH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|107837061|gb|ABF84930.1| Holliday junction DNA helicase [Helicobacter pylori HPAG1]
          Length = 183

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|62185081|ref|YP_219866.1| transcription elongation factor NusA [Chlamydophila abortus S26/3]
 gi|62148148|emb|CAH63905.1| N utilization substance protein A [Chlamydophila abortus S26/3]
          Length = 434

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 555 SPLDE----INGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           SPL +    + GI  L  + L+ + + T++ +  +S   LAS+ GIS ++A KI  
Sbjct: 361 SPLLDEPLEMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILE 416


>gi|148264687|ref|YP_001231393.1| hypothetical protein Gura_2644 [Geobacter uraniireducens Rf4]
 gi|146398187|gb|ABQ26820.1| hypothetical protein Gura_2644 [Geobacter uraniireducens Rf4]
          Length = 175

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           K   S L ++ G+G +    L+++ + T   ++ +  + L  I GI+ ++   I  
Sbjct: 2   KKKLSELQKLRGVGEVLSGRLVEAGYDTFAKVAAAGEDGLKKIPGINPRLVTSIVE 57


>gi|323488671|ref|ZP_08093913.1| 5'-3' exonuclease [Planococcus donghaensis MPA1U2]
 gi|323397689|gb|EGA90493.1| 5'-3' exonuclease [Planococcus donghaensis MPA1U2]
          Length = 299

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            + GIGP     L+Q++G+   +  +  E L 
Sbjct: 196 GVKGIGPKTALQLIQNYGSTNGVLEA-IEELK 226


>gi|296120323|ref|YP_003628101.1| DNA protecting protein DprA [Planctomyces limnophilus DSM 3776]
 gi|296012663|gb|ADG65902.1| DNA protecting protein DprA [Planctomyces limnophilus DSM 3776]
          Length = 368

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L  I  IGP     L+Q  G+   +  +S   L    G+S  +A ++
Sbjct: 11  QLMLIPKIGPATYERLIQHLGSPTAVLEASAAVLEQA-GLSSTLASRV 57


>gi|166154716|ref|YP_001654834.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           434/Bu]
 gi|166155591|ref|YP_001653846.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335990|ref|ZP_07224234.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis L2tet1]
 gi|229560018|sp|B0B875|RUVA_CHLT2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560020|sp|B0BCE0|RUVA_CHLTB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|165930704|emb|CAP04201.1| holliday junction DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|165931579|emb|CAP07155.1| holliday junction DNA helicase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 200

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 562 GIGPLRKRLLLQSFG-----TVKMISRSSPETLASIEGISKKIACKI 603
           GIGP     +L  F      ++  +     + +AS+ GI KK A K+
Sbjct: 81  GIGPKTGLSILNMFPLQELCSIARLEN--VKAIASVPGIGKKTAEKL 125


>gi|323697995|ref|ZP_08109907.1| helicase, RecD/TraA family [Desulfovibrio sp. ND132]
 gi|323457927|gb|EGB13792.1| helicase, RecD/TraA family [Desulfovibrio desulfuricans ND132]
          Length = 736

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G     L+++ FG  V  +    PE L  I+GISK     I  
Sbjct: 94  SIKGVGEKTAALIVEEFGVGVLDVLDEDPEQLLRIKGISKNKLKDIIE 141


>gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC]
 gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC]
          Length = 868

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMI 581
           D I G+   GP + + LL+ F +V+ +
Sbjct: 186 DNIPGVSGCGPKKAQALLKEFQSVEEL 212


>gi|296131039|ref|YP_003638289.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
 gi|296022854|gb|ADG76090.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
          Length = 393

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKM 580
           L  I G+GP     LL +FG+V  
Sbjct: 238 LTGIRGVGPKTAVALLNAFGSVDA 261


>gi|291549033|emb|CBL25295.1| DNA ligase, NAD-dependent [Ruminococcus torques L2-14]
          Length = 652

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 551 KAAYSPL------DEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           KA  + L        I GIG    +++ ++ G   + + ++    L  I+G+   +A   
Sbjct: 485 KARKTTLARLVYGLGIPGIGSANAKVICRALGNDSQRVLQAEEAELVEIQGVGAVMAKSY 544

Query: 604 YNHFHKNTSH 613
            ++F +    
Sbjct: 545 VDYFKEEEHQ 554


>gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70]
 gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s]
 gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923]
 gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2]
 gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150]
 gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023]
          Length = 866

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMI 581
           D I G+   GP + + LL+ F +V+ +
Sbjct: 184 DNIPGVSGCGPKKAQALLKEFQSVEEL 210


>gi|220932957|ref|YP_002509865.1| hypothetical protein Hore_21250 [Halothermothrix orenii H 168]
 gi|219994267|gb|ACL70870.1| hypothetical protein Hore_21250 [Halothermothrix orenii H 168]
          Length = 306

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 566 LRKRLLLQSFGTVKMISRSSPETLASIEGI 595
            R + +LQ + T K   ++S + +AS+ GI
Sbjct: 46  KRLKKILQHYPTEKKFKQASIKEIASVLGI 75


>gi|208434791|ref|YP_002266457.1| Holliday junction DNA helicase [Helicobacter pylori G27]
 gi|226698733|sp|B5Z7P2|RUVA_HELPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|208432720|gb|ACI27591.1| Holliday junction DNA helicase [Helicobacter pylori G27]
          Length = 183

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1]
 gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 866

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMI 581
           D I G+   GP + + LL+ F +V+ +
Sbjct: 184 DNIPGVSGCGPKKAQALLKEFQSVEEL 210


>gi|116333999|ref|YP_795526.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           brevis ATCC 367]
 gi|116099346|gb|ABJ64495.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           brevis ATCC 367]
          Length = 231

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L ++ GIG  + + ++        F +VK         LA + G  +K    + +
Sbjct: 176 ATVTELQQLTGIGEKKAQKIVDYRTDHGHFQSVK--------DLAQVPGFGEKTVANLQD 227

Query: 606 HF 607
             
Sbjct: 228 QL 229


>gi|33322755|gb|AAQ07112.1|AF496424_1 hypothetical protein [Lactobacillus delbrueckii subsp. lactis]
          Length = 238

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 6   MPECP----GVYQ---MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR----ITHMISQ 54
           +P       G Y      +  GR++  GKA N+  R++   ++   T R        +++
Sbjct: 137 LPNASENEVGTYITNVFRNAKGRIIVAGKASNI-NRVQQVFNAAAATGRRVLLTGRDVAK 195

Query: 55  INN 57
           I +
Sbjct: 196 IVH 198


>gi|84490269|ref|YP_448501.1| DNA repair and recombination protein RadA [Methanosphaera
           stadtmanae DSM 3091]
 gi|121731077|sp|Q2NE95|RADA_METST RecName: Full=DNA repair and recombination protein radA
 gi|84373588|gb|ABC57858.1| RadA [Methanosphaera stadtmanae DSM 3091]
          Length = 311

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           + L+++  +G    + L  + F  +  ++ ++P+ L+    I + +A K+     K  
Sbjct: 2   TELEDLPSVGEKTAQKLRDAGFADMMRLATATPKELSVKVEIGEGVAAKVIEAARKAE 59


>gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276]
 gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s]
 gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768]
 gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222]
 gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074]
 gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301]
          Length = 866

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMI 581
           D I G+   GP + + LL+ F +V+ +
Sbjct: 184 DNIPGVSGCGPKKAQALLKEFQSVEEL 210


>gi|15834991|ref|NP_296750.1| transcription elongation factor NusA [Chlamydia muridarum Nigg]
 gi|270285160|ref|ZP_06194554.1| transcription elongation factor NusA [Chlamydia muridarum Nigg]
 gi|270289179|ref|ZP_06195481.1| transcription elongation factor NusA [Chlamydia muridarum Weiss]
 gi|301336555|ref|ZP_07224757.1| transcription elongation factor NusA [Chlamydia muridarum
           MopnTet14]
 gi|7190412|gb|AAF39230.1| N utilization substance protein A [Chlamydia muridarum Nigg]
          Length = 434

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 572 LQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L+   + T++ I  +S   LAS+ GIS ++A KI  
Sbjct: 381 LEHAGYDTIRKILLASASELASVPGISLELAYKILE 416


>gi|299135919|ref|ZP_07029103.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8]
 gi|298602043|gb|EFI58197.1| Holliday junction DNA helicase RuvA [Acidobacterium sp. MP5ACTX8]
          Length = 198

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 527 LYFIQRLRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG-TVK----MI 581
           L+    +R++A   A+    +  +K  +  L  I+GIGP     +L   G + +     I
Sbjct: 47  LHVHTHVREDA--LALFGFAELTEKRLFEKLLTISGIGPKLAITVLS--GISAERLVGAI 102

Query: 582 SRSSPETLASIEGISKKIACKI 603
                 TL  I GI KK A ++
Sbjct: 103 RAGDHATLTKIPGIGKKTAERV 124


>gi|296111820|ref|YP_003622202.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU
           11154]
 gi|295833352|gb|ADG41233.1| Holliday junction DNA helicase RuvA [Leuconostoc kimchii IMSNU
           11154]
          Length = 196

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  ++ L  ++GIGP     +L    + G V  ++      L    G+ KK A +I
Sbjct: 67  KILFNKLLNVSGIGPKSALAILASDDATGLVNAVANDDASYLTQFPGVGKKTAQQI 122


>gi|237802930|ref|YP_002888124.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804852|ref|YP_002889006.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273152|emb|CAX10065.1| holliday junction DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274164|emb|CAX10958.1| holliday junction DNA helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 200

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 562 GIGPLRKRLLLQSFG-----TVKMISRSSPETLASIEGISKKIACKI 603
           GIGP     +L  F      ++  +     + +AS+ GI KK A K+
Sbjct: 81  GIGPKTGLSILNMFPLQELCSIARLEN--VKAIASVPGIGKKTAEKL 125


>gi|242014497|ref|XP_002427926.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
 gi|212512410|gb|EEB15188.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
          Length = 380

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISR 583
           D I GIGP R   L++   +++ I  
Sbjct: 236 DSIKGIGPKRAIELIKKHKSLEKILE 261


>gi|15605230|ref|NP_220016.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           D/UW-3/CX]
 gi|6685940|sp|O84509|RUVA_CHLTR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3328938|gb|AAC68102.1| Holliday Junction Helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436962|gb|ADH19132.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11222]
 gi|297748631|gb|ADI51177.1| RuvA [Chlamydia trachomatis D-EC]
 gi|297749511|gb|ADI52189.1| RuvA [Chlamydia trachomatis D-LC]
          Length = 200

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 562 GIGPLRKRLLLQSFG-----TVKMISRSSPETLASIEGISKKIACKI 603
           GIGP     +L  F      ++  +     + +AS+ GI KK A K+
Sbjct: 81  GIGPKTGLSILNMFPLQELCSIARLEN--VKAIASVPGIGKKTAEKL 125


>gi|118578968|ref|YP_900218.1| DNA protecting protein DprA [Pelobacter propionicus DSM 2379]
 gi|118501678|gb|ABK98160.1| DNA protecting protein DprA [Pelobacter propionicus DSM 2379]
          Length = 371

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI 595
           L  + G+G +  R LL+ F T +    ++PE LA + G+
Sbjct: 16  LKSVAGVGSVTFRRLLERFDTPRAALHAAPEELARVRGM 54


>gi|312794680|ref|YP_004027603.1| helicase, recd/traa family [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181820|gb|ADQ41990.1| helicase, RecD/TraA family [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 741

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I GIG    + ++ +FG     + +  PE L  I G++ +   +I N F
Sbjct: 89  IKGIGQKTAKKIVDTFGDDTARVLQEEPEKLLQIRGMTPEKVERIRNMF 137


>gi|307945547|ref|ZP_07660883.1| putative DNA repair RadC-like protein [Roseibium sp. TrichSKD4]
 gi|307771420|gb|EFO30645.1| putative DNA repair RadC-like protein [Roseibium sp. TrichSKD4]
          Length = 237

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
               + LL  FG+   +  +    L  + GI 
Sbjct: 57  KKVAKALLAKFGSFSAVLSAPRARLKEVSGIG 88


>gi|205372094|ref|ZP_03224911.1| DNA integrity scanning protein DisA [Bacillus coahuilensis m4-4]
          Length = 357

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L+  F  +  IS+++ + L  ++GI +  A KI     
Sbjct: 307 NLVAKFQHLGEISKATIQELDEVDGIGEVRARKIKEGLK 345


>gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
 gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
          Length = 949

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 220


>gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
 gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
          Length = 875

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 23/68 (33%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEG---------------ISKKI 599
           D I G   IG    + LL  FG+++ +     E L+ +                 ISK++
Sbjct: 183 DNIPGVKGIGEKGAKKLLDEFGSIENLY----ENLSQVRNERTKNMLFESKENAFISKRL 238

Query: 600 ACKIYNHF 607
           A  +Y+  
Sbjct: 239 A-TLYDEL 245


>gi|76789238|ref|YP_328324.1| Holliday junction DNA helicase motor protein [Chlamydia trachomatis
           A/HAR-13]
 gi|90134759|sp|Q3KLJ6|RUVA_CHLTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|76167768|gb|AAX50776.1| RuvA [Chlamydia trachomatis A/HAR-13]
          Length = 200

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 562 GIGPLRKRLLLQSFG-----TVKMISRSSPETLASIEGISKKIACKI 603
           GIGP     +L  F      ++  +     + +AS+ GI KK A K+
Sbjct: 81  GIGPKTGLSILNMFPLQELCSIARLEN--VKAIASVPGIGKKTAEKL 125


>gi|50086076|ref|YP_047586.1| putative DNA uptake protein and/or related DNA-binding protein
           [Acinetobacter sp. ADP1]
 gi|49532052|emb|CAG69764.1| putative DNA uptake protein and/or related DNA-binding protein
           [Acinetobacter sp. ADP1]
          Length = 128

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACK 602
           A    L +++G+G  +   +++    +G       +S + L  ++GI  K   K
Sbjct: 73  ATAKELQQLHGVGEKKALAIVEYRQQYG-----KFASVDDLQKVKGIGPKFIEK 121


>gi|326382291|ref|ZP_08203983.1| 5'-3' exonuclease [Gordonia neofelifaecis NRRL B-59395]
 gi|326199021|gb|EGD56203.1| 5'-3' exonuclease [Gordonia neofelifaecis NRRL B-59395]
          Length = 313

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  F ++  +  +
Sbjct: 207 LPGVPGIGEKTAAKLLTQFASLDALESA 234


>gi|331663565|ref|ZP_08364475.1| putative chaperonin [Escherichia coli TA143]
 gi|331059364|gb|EGI31341.1| putative chaperonin [Escherichia coli TA143]
          Length = 648

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 22/85 (25%)

Query: 549 RKKAAYSPLD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKI 599
           R++     L+        I G+GP RK  L +SFG  T   ++R S      ++G    +
Sbjct: 505 RERQKQKFLEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHL 560

Query: 600 ACKIYNH---------FHKNTSHTP 615
              + +          F  N + TP
Sbjct: 561 TQAVIDWKASCERRFVFRPNEAVTP 585


>gi|301647999|ref|ZP_07247772.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|301073900|gb|EFK88706.1| conserved hypothetical protein [Escherichia coli MS 146-1]
          Length = 508

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 22/85 (25%)

Query: 549 RKKAAYSPLD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKI 599
           R++     L+        I G+GP RK  L +SFG  T   ++R S      ++G    +
Sbjct: 365 RERQKQKFLEGFFIDAASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHL 420

Query: 600 ACKIYNH---------FHKNTSHTP 615
              + +          F  N + TP
Sbjct: 421 TQAVIDWKASCERRFVFRPNEAVTP 445


>gi|291232858|ref|XP_002736371.1| PREDICTED: F-box and WD repeat domain containing 7-like
           [Saccoglossus kowalevskii]
          Length = 734

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 8/46 (17%)

Query: 557 LDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKI 599
           L+ + G+G  +   ++   ++FG+       S E L  + GI   +
Sbjct: 17  LESLIGVGRAKAEAIIEARKAFGSFS-----SIEDLTKVPGIGSSV 57


>gi|255348878|ref|ZP_05380885.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70]
 gi|255503418|ref|ZP_05381808.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 70s]
 gi|255507096|ref|ZP_05382735.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis
           D(s)2923]
 gi|289525546|emb|CBJ15024.1| holliday junction DNA helicase [Chlamydia trachomatis Sweden2]
 gi|296435106|gb|ADH17284.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/150]
 gi|296438826|gb|ADH20979.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis E/11023]
          Length = 200

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 562 GIGPLRKRLLLQSFG-----TVKMISRSSPETLASIEGISKKIACKI 603
           GIGP     +L  F      ++  +     + +AS+ GI KK A K+
Sbjct: 81  GIGPKTGLSILNMFPLQELCSIARLEN--VKAIASVPGIGKKTAEKL 125


>gi|255311319|ref|ZP_05353889.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276]
 gi|255317620|ref|ZP_05358866.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis 6276s]
 gi|296436034|gb|ADH18208.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9768]
 gi|296437895|gb|ADH20056.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/11074]
 gi|297140395|gb|ADH97153.1| Holliday junction DNA helicase RuvA [Chlamydia trachomatis G/9301]
          Length = 200

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 562 GIGPLRKRLLLQSFG-----TVKMISRSSPETLASIEGISKKIACKI 603
           GIGP     +L  F      ++  +     + +AS+ GI KK A K+
Sbjct: 81  GIGPKTGLSILNMFPLQELCSIARLEN--VKAIASVPGIGKKTAEKL 125


>gi|254796615|ref|YP_003081451.1| DNA repair protein RadC [Neorickettsia risticii str. Illinois]
 gi|254589855|gb|ACT69217.1| DNA repair protein RadC [Neorickettsia risticii str. Illinois]
          Length = 147

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + LL+ FG  K +  +  + L S+ G++  +   I 
Sbjct: 60  KSLLKEFGDFKKLFAADHDDLKSVSGVNDAVVALIK 95


>gi|218705605|ref|YP_002413124.1| hypothetical protein ECUMN_2408 [Escherichia coli UMN026]
 gi|293405545|ref|ZP_06649537.1| yegI protein [Escherichia coli FVEC1412]
 gi|298381229|ref|ZP_06990828.1| yegI protein [Escherichia coli FVEC1302]
 gi|218432702|emb|CAR13596.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|291427753|gb|EFF00780.1| yegI protein [Escherichia coli FVEC1412]
 gi|298278671|gb|EFI20185.1| yegI protein [Escherichia coli FVEC1302]
          Length = 648

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 22/85 (25%)

Query: 549 RKKAAYSPLD-------EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKI 599
           R++     L+        I G+GP RK  L +SFG  T   ++R S      ++G    +
Sbjct: 505 RERQKQKFLEGFFIDVASIPGVGPARKAAL-RSFGIETAADVTRRSV---KQVKGFGDHL 560

Query: 600 ACKIYNH---------FHKNTSHTP 615
              + +          F  N + TP
Sbjct: 561 TQAVIDWKASCERRFVFRPNEAVTP 585


>gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
 gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
          Length = 875

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            + G+G      LL+ +GTV+ +  +S E ++      KK+   +  + H+  
Sbjct: 192 GVPGVGEKTALKLLKEYGTVEHVL-ASLEHIS-----GKKLKENLQTY-HEQA 237


>gi|329942818|ref|ZP_08291597.1| transcription termination factor NusA [Chlamydophila psittaci
           Cal10]
 gi|332287410|ref|YP_004422311.1| transcription elongation factor NusA [Chlamydophila psittaci 6BC]
 gi|313847990|emb|CBY16987.1| N utilization substance protein A [Chlamydophila psittaci RD1]
 gi|325507005|gb|ADZ18643.1| transcription elongation factor NusA [Chlamydophila psittaci 6BC]
 gi|328815078|gb|EGF85067.1| transcription termination factor NusA [Chlamydophila psittaci
           Cal10]
 gi|328914659|gb|AEB55492.1| N utilization substance protein A [Chlamydophila psittaci 6BC]
          Length = 434

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 555 SPLDE----INGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           SPL +    + GI  L  + L+ + + T++ +  +S   LAS+ GIS ++A KI  
Sbjct: 361 SPLLDEPLEMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILE 416


>gi|300868489|ref|ZP_07113108.1| hypothetical protein OSCI_3720015 [Oscillatoria sp. PCC 6506]
 gi|300333478|emb|CBN58296.1| hypothetical protein OSCI_3720015 [Oscillatoria sp. PCC 6506]
          Length = 232

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 3  SEQMPECPGVY--QMLDIAGRVLYVGKAYNLQKRI 35
           +++P   G+Y     D    +LY+G + NL+ R+
Sbjct: 27 KQKLPVEKGIYFILFSDK---ILYIGSSRNLRTRV 58


>gi|284031885|ref|YP_003381816.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
 gi|283811178|gb|ADB33017.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
          Length = 671

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           FG+++ ++ +  E L ++E I  K+A  +  H 
Sbjct: 520 FGSLEEVADAGEEGLVAVEDIGPKVAASLVEHL 552


>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
 gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
          Length = 931

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKIYN 605
            + G+G    + LLQ  G+++ +   + + +A + G   SK +A K+ +
Sbjct: 192 GVPGVGDKTAKALLQGIGSLEKLYE-NLDDIAPL-GFRGSKTMAKKLVD 238


>gi|160938311|ref|ZP_02085666.1| hypothetical protein CLOBOL_03207 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438684|gb|EDP16441.1| hypothetical protein CLOBOL_03207 [Clostridium bolteae ATCC
           BAA-613]
          Length = 293

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L  + GIG  R   ++     FG  K     S E + ++ GI      KI +
Sbjct: 242 ELMTLRGIGASRADDIIHYRQEFGGFK-----SIEDIMNVSGIKNAAFEKIKD 289


>gi|58584795|ref|YP_198368.1| transcription elongation factor NusA [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419111|gb|AAW71126.1| Transcription elongation factor, NusA [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 520

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 7/50 (14%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L+EI G      +LL+   F +V+ IS +S + LASIEG ++ IA ++ N
Sbjct: 387 LEEIMG------QLLVTEGFSSVEDISNASIKELASIEGFNEDIASELRN 430


>gi|310826753|ref|YP_003959110.1| hypothetical protein ELI_1159 [Eubacterium limosum KIST612]
 gi|308738487|gb|ADO36147.1| hypothetical protein ELI_1159 [Eubacterium limosum KIST612]
          Length = 736

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           +   S L    GIG      ++  FG  T+  I  + P+ L+ + GI KK   KI  
Sbjct: 81  RYLSSGLL--PGIGEKTAIEIVNHFGADTLD-ILDNHPDRLSEVHGIGKKTLDKIKE 134


>gi|15611882|ref|NP_223533.1| Holliday junction DNA helicase RuvA [Helicobacter pylori J99]
 gi|6685958|sp|Q9ZKW9|RUVA_HELPJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|4155386|gb|AAD06396.1| HOLLIDAY JUNCTION DNA HELICASE [Helicobacter pylori J99]
          Length = 183

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 220


>gi|254779490|ref|YP_003057595.1| Holliday junction DNA helicase RuvA [Helicobacter pylori B38]
 gi|254001401|emb|CAX29394.1| Holliday junction ATP-dependent DNA helicase ruvA [Helicobacter
           pylori B38]
          Length = 183

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|258516436|ref|YP_003192658.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780141|gb|ACV64035.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 214

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 12/48 (25%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSS-----PETLASIEGISKK 598
            LD + GIGP     +++         ++S      E L ++ GI +K
Sbjct: 162 ELDSLPGIGPTMAGRIIEY-------RQASGSFQTVEDLKNVSGIGEK 202


>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
 gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
          Length = 870

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            + GIG      LL+ F +++ I     + +  + G  +K
Sbjct: 192 GVPGIGEKTAIKLLKEFSSLEEI----LDNIDKVSGKKRK 227


>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
          Length = 833

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I GI   G      LL+ FG+V+ +     + L+ ++G   KI   I
Sbjct: 148 DNIPGIPNIGEKTAIKLLKEFGSVENL----LQNLSQLKG---KIKENI 189


>gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
 gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
          Length = 949

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLISEFGSIENLLE 220


>gi|298527066|ref|ZP_07014475.1| DNA integrity scanning protein disA [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496860|gb|EFI32154.1| DNA integrity scanning protein disA [Mycobacterium tuberculosis
           94_M4241A]
          Length = 145

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L+++FGT++ +  +S   L S++GI    A  +     +    T
Sbjct: 98  LVRAFGTLQGLLAASAGDLQSVDGIGAMWARHVREGLSQLAEST 141


>gi|237755558|ref|ZP_04584176.1| DNA polymerase beta family [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692291|gb|EEP61281.1| DNA polymerase beta family [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 582

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 8/57 (14%)

Query: 559 EINGIGPLRKRLLLQSFGT-----VKMISRSSPET---LASIEGISKKIACKIYNHF 607
           +I GIG      +L+   T      + + +  PE    L  + G   K   +IY   
Sbjct: 57  DIRGIGSHTVDKILEYIKTGKIQKYEELKKLIPEDFLDLMEVPGFGPKTLKRIYEEL 113


>gi|215405634|ref|ZP_03417815.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           02_1987]
 gi|215429087|ref|ZP_03427006.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           T92]
 gi|215432559|ref|ZP_03430478.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           EAS054]
 gi|215447920|ref|ZP_03434672.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           T85]
 gi|219559663|ref|ZP_03538739.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           T17]
 gi|260184503|ref|ZP_05761977.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           CPHL_A]
 gi|260198628|ref|ZP_05766119.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           T46]
 gi|260202774|ref|ZP_05770265.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           K85]
 gi|289441016|ref|ZP_06430760.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289445180|ref|ZP_06434924.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289571828|ref|ZP_06452055.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289572239|ref|ZP_06452466.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           K85]
 gi|289747423|ref|ZP_06506801.1| DNA integrity scanning protein disA [Mycobacterium tuberculosis
           02_1987]
 gi|289752301|ref|ZP_06511679.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289755715|ref|ZP_06515093.1| DNA integrity scanning protein disA [Mycobacterium tuberculosis
           EAS054]
 gi|289759744|ref|ZP_06519122.1| DNA integrity scanning protein disA [Mycobacterium tuberculosis
           T85]
 gi|294993706|ref|ZP_06799397.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           210]
 gi|289413935|gb|EFD11175.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289418138|gb|EFD15339.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289536670|gb|EFD41248.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           K85]
 gi|289545582|gb|EFD49230.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289687951|gb|EFD55439.1| DNA integrity scanning protein disA [Mycobacterium tuberculosis
           02_1987]
 gi|289692888|gb|EFD60317.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289696302|gb|EFD63731.1| DNA integrity scanning protein disA [Mycobacterium tuberculosis
           EAS054]
 gi|289715308|gb|EFD79320.1| DNA integrity scanning protein disA [Mycobacterium tuberculosis
           T85]
 gi|326905425|gb|EGE52358.1| hypothetical protein TBPG_03377 [Mycobacterium tuberculosis W-148]
          Length = 358

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L+++FGT++ +  +S   L S++GI    A  +     +    T
Sbjct: 311 LVRAFGTLQGLLAASAGDLQSVDGIGAMWARHVREGLSQLAEST 354


>gi|103486559|ref|YP_616120.1| DNA repair protein RadC [Sphingopyxis alaskensis RB2256]
 gi|98976636|gb|ABF52787.1| DNA repair protein RadC [Sphingopyxis alaskensis RB2256]
          Length = 272

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 25/84 (29%)

Query: 544 THRKR-RKKAAYSPLDEINGIG-------------PLR-----KRLLLQSFGTVKMISRS 584
            HR R R +     L++ +G+              P R      + LL+ FG++  +  +
Sbjct: 56  GHRARLRSRL----LEDADGLADYELVEYLLALAIPRRDTKPLAKALLREFGSLAQLVSA 111

Query: 585 SPETLASIEGISKK--IACKIYNH 606
            PE+L  ++G+      A KI   
Sbjct: 112 DPESLRRVDGLGDTGIAALKIVQA 135


>gi|15610722|ref|NP_218103.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           H37Rv]
 gi|15843199|ref|NP_338236.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           CDC1551]
 gi|148663450|ref|YP_001284973.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           H37Ra]
 gi|148824792|ref|YP_001289546.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           F11]
 gi|167967110|ref|ZP_02549387.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           H37Ra]
 gi|218755370|ref|ZP_03534166.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis GM
           1503]
 gi|253800627|ref|YP_003033628.1| hypothetical protein TBMG_03625 [Mycobacterium tuberculosis KZN
           1435]
 gi|254234159|ref|ZP_04927483.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254366149|ref|ZP_04982193.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552695|ref|ZP_05143142.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289555850|ref|ZP_06445060.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289763765|ref|ZP_06523143.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297636261|ref|ZP_06954041.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis KZN
           4207]
 gi|297733254|ref|ZP_06962372.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis KZN
           R506]
 gi|306777940|ref|ZP_07416277.1| hypothetical protein TMAG_00076 [Mycobacterium tuberculosis
           SUMu001]
 gi|306778469|ref|ZP_07416806.1| hypothetical protein TMBG_02121 [Mycobacterium tuberculosis
           SUMu002]
 gi|306786493|ref|ZP_07424815.1| hypothetical protein TMCG_03709 [Mycobacterium tuberculosis
           SUMu003]
 gi|306790858|ref|ZP_07429180.1| hypothetical protein TMDG_01317 [Mycobacterium tuberculosis
           SUMu004]
 gi|306791181|ref|ZP_07429483.1| hypothetical protein TMEG_00075 [Mycobacterium tuberculosis
           SUMu005]
 gi|306795966|ref|ZP_07434268.1| hypothetical protein TMFG_01521 [Mycobacterium tuberculosis
           SUMu006]
 gi|306801214|ref|ZP_07437882.1| hypothetical protein TMHG_02645 [Mycobacterium tuberculosis
           SUMu008]
 gi|306805426|ref|ZP_07442094.1| hypothetical protein TMGG_01122 [Mycobacterium tuberculosis
           SUMu007]
 gi|306969718|ref|ZP_07482379.1| hypothetical protein TMIG_03209 [Mycobacterium tuberculosis
           SUMu009]
 gi|306974058|ref|ZP_07486719.1| hypothetical protein TMJG_00832 [Mycobacterium tuberculosis
           SUMu010]
 gi|307081767|ref|ZP_07490937.1| hypothetical protein TMKG_00824 [Mycobacterium tuberculosis
           SUMu011]
 gi|307086383|ref|ZP_07495496.1| hypothetical protein TMLG_00076 [Mycobacterium tuberculosis
           SUMu012]
 gi|313660584|ref|ZP_07817464.1| DNA integrity scanning protein DisA [Mycobacterium tuberculosis KZN
           V2475]
 gi|166201840|sp|A5U8R1|DISA_MYCTA RecName: Full=DNA integrity scanning protein disA
 gi|2950409|emb|CAA17855.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13883552|gb|AAK48050.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|124603827|gb|EAY61790.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134151661|gb|EBA43706.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507602|gb|ABQ75411.1| hypothetical protein MRA_3625 [Mycobacterium tuberculosis H37Ra]
 gi|148723319|gb|ABR07944.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253322130|gb|ACT26733.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289440482|gb|EFD22975.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289711271|gb|EFD75287.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|308213812|gb|EFO73211.1| hypothetical protein TMAG_00076 [Mycobacterium tuberculosis
           SUMu001]
 gi|308328566|gb|EFP17417.1| hypothetical protein TMBG_02121 [Mycobacterium tuberculosis
           SUMu002]
 gi|308328981|gb|EFP17832.1| hypothetical protein TMCG_03709 [Mycobacterium tuberculosis
           SUMu003]
 gi|308332803|gb|EFP21654.1| hypothetical protein TMDG_01317 [Mycobacterium tuberculosis
           SUMu004]
 gi|308340294|gb|EFP29145.1| hypothetical protein TMEG_00075 [Mycobacterium tuberculosis
           SUMu005]
 gi|308343633|gb|EFP32484.1| hypothetical protein TMFG_01521 [Mycobacterium tuberculosis
           SUMu006]
 gi|308348100|gb|EFP36951.1| hypothetical protein TMGG_01122 [Mycobacterium tuberculosis
           SUMu007]
 gi|308352023|gb|EFP40874.1| hypothetical protein TMHG_02645 [Mycobacterium tuberculosis
           SUMu008]
 gi|308352810|gb|EFP41661.1| hypothetical protein TMIG_03209 [Mycobacterium tuberculosis
           SUMu009]
 gi|308356660|gb|EFP45511.1| hypothetical protein TMJG_00832 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360615|gb|EFP49466.1| hypothetical protein TMKG_00824 [Mycobacterium tuberculosis
           SUMu011]
 gi|308364203|gb|EFP53054.1| hypothetical protein TMLG_00076 [Mycobacterium tuberculosis
           SUMu012]
 gi|323717780|gb|EGB26978.1| hypothetical protein TMMG_00076 [Mycobacterium tuberculosis
           CDC1551A]
 gi|328460358|gb|AEB05781.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 358

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L+++FGT++ +  +S   L S++GI    A  +     +    T
Sbjct: 311 LVRAFGTLQGLLAASAGDLQSVDGIGAMWARHVREGLSQLAEST 354


>gi|325528992|gb|EGD06011.1| hypothetical protein B1M_03557 [Burkholderia sp. TJI49]
          Length = 230

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            LL+ FGT++ +  ++ +   +  GI    A
Sbjct: 55  KLLRQFGTLRGMLDATADDFDAYPGIGPARA 85


>gi|320528379|ref|ZP_08029541.1| comEA protein [Solobacterium moorei F0204]
 gi|320131293|gb|EFW23861.1| comEA protein [Solobacterium moorei F0204]
          Length = 158

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 8/52 (15%)

Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L +I  IG    + ++     +G  + +     E L  ++GI +     I +
Sbjct: 108 LLQIPKIGEKTAQAIIDYRNQYGLFQAL-----EDLMKVKGIGQAKFDFIKD 154


>gi|297570259|ref|YP_003691603.1| DNA protecting protein DprA [Desulfurivibrio alkaliphilus AHT2]
 gi|296926174|gb|ADH86984.1| DNA protecting protein DprA [Desulfurivibrio alkaliphilus AHT2]
          Length = 381

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            G+GP     LL++ G+++ +  +SP  L ++ G+   IA  +
Sbjct: 20  PGLGPAGANRLLEATGSIEQLFAASPNELQAL-GLRPAIAQAL 61


>gi|255066950|ref|ZP_05318805.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256]
 gi|255048775|gb|EET44239.1| holliday junction DNA helicase RuvA [Neisseria sicca ATCC 29256]
          Length = 194

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACK 602
           +A +  L +++GIG      +L +  +   ++R+  +     L+S  GI KK A +
Sbjct: 69  RATFRQLVKVSGIGAKTALGILSAM-SADELARAVADEDIKRLSSAPGIGKKTAER 123


>gi|238019433|ref|ZP_04599859.1| hypothetical protein VEIDISOL_01302 [Veillonella dispar ATCC 17748]
 gi|237864132|gb|EEP65422.1| hypothetical protein VEIDISOL_01302 [Veillonella dispar ATCC 17748]
          Length = 717

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G G      +L+ FG   ++++    PE +  + G+ K +  +++N  
Sbjct: 88  GIKGFGEKSVEKVLEYFGIRILEVLREERPEEIKDVPGLRKSVKDELFNTL 138


>gi|261365694|ref|ZP_05978577.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996]
 gi|288565789|gb|EFC87349.1| holliday junction DNA helicase RuvA [Neisseria mucosa ATCC 25996]
          Length = 194

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACK 602
           +A +  L +++GIG      +L +  +   ++R+  +     L+S  GI KK A +
Sbjct: 69  RATFRQLVKVSGIGAKTALGILSAM-SADELARAVADEDIKRLSSAPGIGKKTAER 123


>gi|254360923|ref|ZP_04977069.1| possible competence protein [Mannheimia haemolytica PHL213]
 gi|153092402|gb|EDN73465.1| possible competence protein [Mannheimia haemolytica PHL213]
          Length = 209

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L  + GIG  + + +++       I  +    LA+I GI      K+  + 
Sbjct: 158 QLQSLTGIGEAKAKAIVEYRKKHGKIKNA--AELANIPGIGDATIEKVAPYL 207


>gi|145514173|ref|XP_001442997.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124467070|sp|A0CXT3|FEN11_PARTE RecName: Full=Flap endonuclease 1-1; Short=FEN-1-1; AltName:
           Full=Flap structure-specific endonuclease 1-1
 gi|124410358|emb|CAK75600.1| unnamed protein product [Paramecium tetraurelia]
          Length = 390

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISR 583
           ++I GIGP     L++ F +++ I  
Sbjct: 237 EKIEGIGPGTAYKLIKEFKSIEGILE 262


>gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2]
 gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
 gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2]
          Length = 922

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S E ++S++
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLEQVSSLK 223


>gi|299065959|emb|CBJ37140.1| DNA repair protein radC homolog, associated with replication fork
           [Ralstonia solanacearum CMR15]
          Length = 224

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R LL  FG++  +  +S    ++I G+        Y   H
Sbjct: 48  RELLAHFGSLGRLCHASRREFSAIHGMGPAK----YAQLH 83


>gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1]
          Length = 912

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  I G+G       +  FG+   +     E +A ++G   K+  K+  H 
Sbjct: 211 LPGIPGVGEKTAAKWINQFGSFAEL----VERVAEVKG---KVGDKLREHL 254


>gi|293604225|ref|ZP_06686633.1| DNA repair protein RadC [Achromobacter piechaudii ATCC 43553]
 gi|292817450|gb|EFF76523.1| DNA repair protein RadC [Achromobacter piechaudii ATCC 43553]
          Length = 225

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            LL+ F  ++ +  ++PE L ++ G+    A
Sbjct: 50  RLLERFCGLRGLLGATPEELMTVPGLGAAKA 80


>gi|253995755|ref|YP_003047819.1| DNA repair protein RadC [Methylotenera mobilis JLW8]
 gi|253982434|gb|ACT47292.1| DNA repair protein RadC [Methylotenera mobilis JLW8]
          Length = 224

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS 596
           R LL  FG++  I  +S + L+ + GI 
Sbjct: 48  RDLLSQFGSLNGIFAASEDALSQVHGIG 75


>gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4]
 gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4]
          Length = 949

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLISEFGSIENLLE 220


>gi|169629967|ref|YP_001703616.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus ATCC
           19977]
 gi|229560105|sp|B1MCJ1|RUVA_MYCA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|169241934|emb|CAM62962.1| Holliday junction DNA helicase RuvA [Mycobacterium abscessus]
          Length = 202

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYN 605
            +  ++ L  ++G+GP      L  +     + ++        L  + GI K+ A ++  
Sbjct: 67  ARDLFTTLLGVSGVGPKIAMATLAVY-DAPTLRQALADGDVAALTRVPGIGKRGAERLVL 125

Query: 606 HFHKNTSHTP 615
              +  +  P
Sbjct: 126 ELREKVAAAP 135


>gi|163869137|ref|YP_001610376.1| Holliday junction DNA helicase RuvA [Bartonella tribocorum CIP
           105476]
 gi|189045742|sp|A9IYK7|RUVA_BART1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161018823|emb|CAK02381.1| holliday junction DNA helicase RuvA [Bartonella tribocorum CIP
           105476]
          Length = 204

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 22/123 (17%)

Query: 501 PKRSAGMEKFFVKKGEALVLNMRDPILYFI--QRLRDEAHR---FAITTHRKRRKKAA-Y 554
                G   F   +     L      L       +R+EA R   FA       R +   +
Sbjct: 20  DVHGVGYVVFISNRLRP-SLPSVGEALSLFIETHVREEAIRLFGFA------TRAEQEWF 72

Query: 555 SPLDEINGIGPLRKRLLLQSFGTV--KMISRS----SPETLASIEGISKKIACKIYNHFH 608
             L  + G+G      +L   GT+    ++++        ++   G+ KK++ +I     
Sbjct: 73  CMLQNVPGVGAKVALAIL---GTLSPDELAQAIALNDVAMISRAPGVGKKVSERIVGELK 129

Query: 609 KNT 611
             T
Sbjct: 130 SKT 132


>gi|87302215|ref|ZP_01085040.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           5701]
 gi|87283140|gb|EAQ75096.1| putative holliday junction DNA helicase RuvA [Synechococcus sp. WH
           5701]
          Length = 221

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 506 GMEKFFVKKGEALVLNMRDPI-LYFIQRLRDEAHRFAIT--THRKRRKKAAYSPLDEING 562
           G E    ++   L+     P+ LY  Q +RD+      T      R ++  +  L  ++G
Sbjct: 29  GYEVQLTRRHWELLPPAGSPLCLYTHQSIRDD----GWTLFGFGARHERDLFRLLVAVSG 84

Query: 563 IGPLRKRLLLQSFGT------VKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +GP     LL   GT      V+ I ++    L    G+ K+ A ++        + +
Sbjct: 85  VGPQMALALL---GTMPCEELVRAIVQADLRRLCRAPGVGKRTAERLAVELRGKLAES 139


>gi|328474942|gb|EGF45738.1| ComEA family DNA-binding protein [Listeria monocytogenes 220]
          Length = 58

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 576 GTVK-MISRSSPETLASIEGISKKIACKIYNH 606
           G+ K  ++ ++ + L  + GI +  A  I  +
Sbjct: 18  GSAKINLNSATKDDLQQVPGIGESKATAIIEY 49


>gi|329903093|ref|ZP_08273367.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548502|gb|EGF33171.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 192

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I G+GP     +L   G +V  ++++ + +    L  + G+ KK A +
Sbjct: 69  RNVFRQLIKIAGVGPRMALAILS--GMSVAELAQAITLQETGRLTKVPGVGKKTAER 123


>gi|315641044|ref|ZP_07896127.1| competence protein ComEA [Enterococcus italicus DSM 15952]
 gi|315483213|gb|EFU73726.1| competence protein ComEA [Enterococcus italicus DSM 15952]
          Length = 199

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S E L ++ GI +K A  I ++
Sbjct: 140 NINTASAEELQTLTGIGEKKAQAIIDY 166


>gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
 gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
          Length = 896

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G+   G      L++ FGT++ I  ++ + +  
Sbjct: 186 DNIPGVKGVGAKTAESLIKEFGTLENIY-ANIDNIEK 221


>gi|309322041|ref|YP_003935029.1| hypothetical protein [Candida salmanticensis]
 gi|308746518|gb|ADO51052.1| hypothetical protein [Candida salmanticensis]
          Length = 345

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 11  GVYQMLDIAGRVLYVGKAY--NLQKRIKS---YMHSNN---HTHRITHMISQINNIRF-- 60
           GVY +++      Y+G A    L KR+     Y   N    H+ +   + + I  + +  
Sbjct: 92  GVYIIINKITLNYYIGAAITNRLYKRLNQHIIYFSGNKSLKHSIKKYGLNNFIYGLLYEN 151

Query: 61  -TVTCT--EVEALLLEANMIKRLKPRFNILL 88
                +    E LL E+N IK+  P +N++L
Sbjct: 152 KIPMDSVNNKELLLEESNFIKKYNPSYNLVL 182


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 7/44 (15%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           D I G   IG      LL  FG+++ +     + +  + G  +K
Sbjct: 191 DNIPGVDGIGKKTSTKLLHQFGSLEEV----LDNIDQVSGKKRK 230


>gi|297544351|ref|YP_003676653.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842126|gb|ADH60642.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 201

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L+ + GIGP+    +++ F    G  K I     E + ++  I  K+  +I +
Sbjct: 145 ATKEELETLPGIGPVTAERIIE-FRENKGFFKKI-----EDIMNVPRIGPKMFEQIKD 196



 Score = 37.4 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ ++ E L ++ GI    A +I   F +N  
Sbjct: 141 NINTATKEELETLPGIGPVTAERIIE-FRENKG 172


>gi|229597842|pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
           With Amppnp
 gi|229597843|pdb|3EW9|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
           With Amppnp And Potassium Ions
 gi|229597844|pdb|3EWA|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
           With Amppnp And Ammonium Ions
          Length = 322

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISK 597
            L E+ G+GP     L++  G       I+ ++   L  IEGIS+
Sbjct: 4   VLTELPGVGPSTADKLIE--GGYLDFMKIATATIGELTDIEGISE 46


>gi|167950972|ref|ZP_02538046.1| DNA ligase, NAD-dependent [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 256

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLAS-----IEGISKKIACKIYNHFHK 609
            + G+       L + FG+++ + +++PE L       +EG+   +A  I   F +
Sbjct: 91  NVRGLNRAVAERLSERFGSLEALRQATPELLRREQRSLVEGVGPIVADHIVTFFRQ 146


>gi|113869637|ref|YP_728126.1| Smf protein [Ralstonia eutropha H16]
 gi|113528413|emb|CAJ94758.1| Smf protein [Ralstonia eutropha H16]
          Length = 399

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            G+GP+  RLLL +FG  + I   S   L+S+  + KK A  +  
Sbjct: 41  PGVGPVTVRLLLTAFGLPQQILAQSVAALSSV--VPKKHARAVLA 83


>gi|332319827|sp|P0CW58|RADA_METMI RecName: Full=DNA repair and recombination protein radA
 gi|16588837|gb|AAL26913.1|AF322003_1 RadA [Methanococcus maripaludis]
          Length = 322

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISK 597
            L E+ G+GP     L++  G       I+ ++   L  IEGIS+
Sbjct: 4   VLTELPGVGPSTADKLIE--GGYLDFMKIATATIGELTDIEGISE 46


>gi|45358785|ref|NP_988342.1| DNA repair and recombination protein RadA [Methanococcus
           maripaludis S2]
 gi|332319828|sp|P0CW59|RADA_METMP RecName: Full=DNA repair and recombination protein radA
 gi|45047651|emb|CAF30778.1| DNA repair and recombination protein radA [Methanococcus
           maripaludis S2]
          Length = 322

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISK 597
            L E+ G+GP     L++  G       I+ ++   L  IEGIS+
Sbjct: 4   VLTELPGVGPSTADKLIE--GGYLDFMKIATATIGELTDIEGISE 46


>gi|296328881|ref|ZP_06871392.1| DNA repair protein RadC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154002|gb|EFG94809.1| DNA repair protein RadC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 232

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 19/30 (63%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598
           + LL  F ++  + ++S + L++I+G+ K 
Sbjct: 49  KELLNKFKSLDNVFKASFDKLSAIDGLGKN 78


>gi|256003755|ref|ZP_05428743.1| DNA repair protein RadC [Clostridium thermocellum DSM 2360]
 gi|255992316|gb|EEU02410.1| DNA repair protein RadC [Clostridium thermocellum DSM 2360]
 gi|316940493|gb|ADU74527.1| DNA repair protein RadC [Clostridium thermocellum DSM 1313]
          Length = 224

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600
           LL  +G++  +  + P+ LA+  GI +  A
Sbjct: 48  LLNRYGSLSGVFEADPKDLATTPGIGENSA 77


>gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018]
 gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018]
          Length = 896

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D I G+   G      L++ FGT++ I  ++ + +  
Sbjct: 186 DNIPGVKGVGAKTAESLIKEFGTLENIY-ANIDNIEK 221


>gi|268610246|ref|ZP_06143973.1| DNA ligase, NAD-dependent [Ruminococcus flavefaciens FD-1]
          Length = 685

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
            I  IG    RL+   +  V  I + + E L +I+GI + +A      F    + T 
Sbjct: 531 GIPNIGRAASRLICAEYPDVNAIEKLTAEELTAIDGIGEVLANDYVKFFANEDNLTE 587


>gi|253732298|ref|ZP_04866463.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724087|gb|EES92816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 200

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + R+        L    GI KK A +I
Sbjct: 68  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKRAIENENDTYLTKFPGIGKKTARQI 123


>gi|225873244|ref|YP_002754703.1| PHP domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793638|gb|ACO33728.1| PHP domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 580

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 22/74 (29%)

Query: 556 PLDEINGIGPLR---------------KRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            L EI GIG                  +R LL+ +        +S   L  + G+  K  
Sbjct: 53  KLQEIPGIGKGMAANIAQIEETGSFDLRRELLEKY-------NASILELLKLPGMGPKTV 105

Query: 601 CKIYNHFHKNTSHT 614
             +++    ++  T
Sbjct: 106 ALLFSALKVDSIET 119


>gi|212638584|ref|YP_002315104.1| ATP-dependent exoDNAse (exonuclease V) subunit alpha - helicase
           superfamily I member [Anoxybacillus flavithermus WK1]
 gi|212560064|gb|ACJ33119.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase
           superfamily I member [Anoxybacillus flavithermus WK1]
          Length = 784

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 561 NGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            GIG      ++++ G   +  I    P+ LA++  ++K  A ++Y    ++  
Sbjct: 107 KGIGKKTAAAIVETLGERAISKILE-DPDVLANVPKLTKAKAKQLYETLREHEG 159


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 199 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 227


>gi|83955481|ref|ZP_00964112.1| hypothetical protein NAS141_19559 [Sulfitobacter sp. NAS-14.1]
 gi|83840125|gb|EAP79300.1| hypothetical protein NAS141_19559 [Sulfitobacter sp. NAS-14.1]
          Length = 179

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 6  MPECPGVYQMLDIAGRVLYVGKAYN-LQKRIKSYMHSNNHT 45
          +    GVY + D+ G  +YVG++ + ++ R++ ++ S    
Sbjct: 15 LTNQIGVYALCDLDGNPIYVGQSVDGIRTRVRRHLTSARSD 55


>gi|83942246|ref|ZP_00954707.1| hypothetical protein EE36_14437 [Sulfitobacter sp. EE-36]
 gi|83846339|gb|EAP84215.1| hypothetical protein EE36_14437 [Sulfitobacter sp. EE-36]
          Length = 179

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 6  MPECPGVYQMLDIAGRVLYVGKAYN-LQKRIKSYMHSNNHT 45
          +    GVY + D+ G  +YVG++ + ++ R++ ++ S    
Sbjct: 15 LTNQIGVYALCDLDGNPIYVGQSVDGIRTRVRRHLTSARSD 55


>gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CNPAF512]
          Length = 997

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIE 593
            I GIGP     LL+ +G +   + R++   +  ++
Sbjct: 198 GIPGIGPKTAAQLLEEYGDLDTLLERAT--EIKQVK 231


>gi|318055766|ref|NP_001187811.1| flap endonuclease 1-b [Ictalurus punctatus]
 gi|308324033|gb|ADO29152.1| flap endonuclease 1-b [Ictalurus punctatus]
          Length = 380

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 560 INGIGPLRKRLLLQSFGTVKMI 581
           I GIGP R   L++ +G+++ I
Sbjct: 238 IKGIGPKRAIDLIKQYGSIEEI 259


>gi|308184664|ref|YP_003928797.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180]
 gi|308060584|gb|ADO02480.1| Holliday junction DNA helicase RuvA [Helicobacter pylori SJM180]
          Length = 183

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIE 593
            I GIGP     LL+ +G +   + R++   +  ++
Sbjct: 215 GIPGIGPKTAAQLLEEYGDLDTLLERAT--EIKQVK 248


>gi|221141089|ref|ZP_03565582.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|302751470|gb|ADL65647.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 200

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + R+        L    GI KK A +I
Sbjct: 68  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKRAIENENDTYLTKFPGIGKKTARQI 123


>gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56]
          Length = 452

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIE 593
            I GIGP     LL+ +G +   + R++   +  ++
Sbjct: 55  GIPGIGPKTAAQLLEEYGDLDTLLERAT--EIKQVK 88


>gi|218660193|ref|ZP_03516123.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 238

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIE 593
            I GIGP     LL+ +G +   + R++   +  ++
Sbjct: 77  GIPGIGPKTAAQLLEEYGDLDTLLERAT--EIKQVK 110


>gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
          Length = 997

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIE 593
            I GIGP     LL+ +G +   + R++   +  ++
Sbjct: 198 GIPGIGPKTAAQLLEEYGDLDTLLERAT--EIKQVK 231


>gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 939

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG-ISKKIA 600
            + G+G  R   LL+ FG +  +     E L  ++G + +K+A
Sbjct: 193 GVPGVGEKRAFKLLEQFGDMDSLY----ERLDEVKGKLKEKLA 231


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIE 593
            I GIGP     LL+ +G +   + R++   +  ++
Sbjct: 215 GIPGIGPKTAAQLLEEYGDLDTLLERAT--EIKQVK 248


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CFN 42]
          Length = 999

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIE 593
            I GIGP     LL+ +G +   + R++   +  ++
Sbjct: 198 GIPGIGPKTAAQLLEEYGDLDTLLERAT--EIKQVK 231


>gi|61657382|emb|CAI44298.1| holliday junction DNA helicase [Thermotoga petrophila]
          Length = 191

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGT-------VKMISRSSPETLASIEGISKKIAC 601
           RKK  +  L +++ +GP     ++    +       V MI+    E L+ + GISKK A 
Sbjct: 70  RKKELFLSLTKVSRLGPKTALKII----SNEDAETLVTMIASQDVEGLSKLPGISKKTAE 125

Query: 602 KIYNHFHKN 610
           +I       
Sbjct: 126 RIVMELKDE 134


>gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKM-ISRSSPETLASIE 593
            I GIGP     LL+ +G +   + R++   +  ++
Sbjct: 215 GIPGIGPKTAAQLLEEYGDLDTLLERAT--EIKQVK 248


>gi|308183035|ref|YP_003927162.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4]
 gi|308065220|gb|ADO07112.1| Holliday junction DNA helicase RuvA [Helicobacter pylori PeCan4]
          Length = 183

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|307595958|ref|YP_003902275.1| ERCC4 domain-containing protein [Vulcanisaeta distributa DSM 14429]
 gi|307551159|gb|ADN51224.1| ERCC4 domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 262

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 548 RRKKAAYSP----LDEINGIGPLRKRLLLQSFGT 577
           +R +         L  + GIGP R   LL++FGT
Sbjct: 145 KRSETIRDAQIQFLSSLPGIGPKRAEALLKAFGT 178


>gi|302546244|ref|ZP_07298586.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302463862|gb|EFL26955.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 388

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  I G+G       +  FG+ + +     E +  ++G   K+  K+ +H 
Sbjct: 220 LPGIPGVGEKTAAKWINQFGSFQDL----VERVDEVKG---KVGEKLRDHL 263


>gi|300933232|ref|ZP_07148488.1| hypothetical protein CresD4_04135 [Corynebacterium resistens DSM
           45100]
          Length = 312

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 14/53 (26%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKK 598
           A  S L+ ++G+GP   + +++       F +V        E L  + GI   
Sbjct: 257 ADQSSLETLSGVGPATAKAIIEWRQANGKFRSV--------EQLMEVRGIGPA 301


>gi|291484792|dbj|BAI85867.1| hypothetical protein BSNT_03510 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 387

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL  + G+GP     L ++F T + ++  ++ E LA +  +  K A  I   
Sbjct: 318 PLQFVPGVGPKTLDKLKKAFATEMAVLHEAAEEDLARV--VPPKTAALIVKA 367


>gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6]
 gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6]
          Length = 949

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 220


>gi|297565625|ref|YP_003684597.1| Helix-hairpin-helix DNA-binding class 1 [Meiothermus silvanus DSM
           9946]
 gi|296850074|gb|ADH63089.1| Helix-hairpin-helix DNA-binding class 1 [Meiothermus silvanus DSM
           9946]
          Length = 577

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGT-VKMISRSSPE--TLASIEGISKKIACKI 603
             +S L ++ G+GP     +   FG+  + ++  S     L  +EGI  + A  I
Sbjct: 1   MDHSKLTKLTGVGPALAERIANHFGSEAEALAALSENPYRLMEVEGIGFRRADCI 55


>gi|109947771|ref|YP_664999.1| Holliday junction DNA helicase RuvA [Helicobacter acinonychis str.
           Sheeba]
 gi|123066165|sp|Q17WH6|RUVA_HELAH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|109714992|emb|CAK00000.1| holliday junction DNA helicase [Helicobacter acinonychis str.
           Sheeba]
          Length = 183

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|29840227|ref|NP_829333.1| transcription elongation factor NusA [Chlamydophila caviae GPIC]
 gi|29834575|gb|AAP05211.1| N utilization substance protein A [Chlamydophila caviae GPIC]
          Length = 434

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           PLD   GI  L  + L+ + + T++ +  +S   LAS+ GIS ++A KI  
Sbjct: 367 PLDM-EGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILE 416


>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
          Length = 949

 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 220


>gi|312876227|ref|ZP_07736214.1| helicase, RecD/TraA family [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797042|gb|EFR13384.1| helicase, RecD/TraA family [Caldicellulosiruptor lactoaceticus 6A]
          Length = 737

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I GIG    + ++ +FG     + +  PE L  I G++ +   +I N F
Sbjct: 89  IKGIGQKTAKKIVDTFGEDTARVLQEEPEKLLQIRGMTPEKVERIRNMF 137


>gi|296333282|ref|ZP_06875735.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305675214|ref|YP_003866886.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296149480|gb|EFG90376.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305413458|gb|ADM38577.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 205

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 14/59 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           A    L  I+G+GP +   ++        F T+        E +  + GI +K   KI 
Sbjct: 149 ATLEELQGISGVGPSKAEAIIAYREENGRFQTI--------EDITKVSGIGEKSFEKIK 199


>gi|291485009|dbj|BAI86084.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis
           subsp. natto BEST195]
          Length = 205

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 14/59 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           A    L  I+G+GP +   ++        F T+        E +  + GI +K   KI 
Sbjct: 149 ATLEELQGISGVGPSKAEAIIAYREENGRFQTI--------EDITKVSGIGEKSFEKIK 199


>gi|221324008|ref|ZP_03605302.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis
           subsp. subtilis str. SMY]
          Length = 205

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 14/59 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           A    L  I+G+GP +   ++        F T+        E +  + GI +K   KI 
Sbjct: 149 ATLEELQGISGVGPSKAEAIIAYREENGRFQTI--------EDITKVSGIGEKSFEKIK 199


>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
 gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
          Length = 928

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + LL  FG+++ +  ++ + L 
Sbjct: 191 DNIPGLPGVGEKTAKKLLADFGSMENLL-ANTDKLK 225


>gi|16079613|ref|NP_390437.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221310484|ref|ZP_03592331.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221314808|ref|ZP_03596613.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221319730|ref|ZP_03601024.1| unspecific high-affinity DNA-binding protein [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|321312044|ref|YP_004204331.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis BSn5]
 gi|729154|sp|P39694|COMEA_BACSU RecName: Full=ComE operon protein 1
 gi|289260|gb|AAC36905.1| comE ORF1 [Bacillus subtilis]
 gi|1303796|dbj|BAA12452.1| ComEA [Bacillus subtilis]
 gi|2635005|emb|CAB14501.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|320018318|gb|ADV93304.1| membrane bound high-affinity DNA-binding receptor [Bacillus
           subtilis BSn5]
          Length = 205

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 14/59 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           A    L  I+G+GP +   ++        F T+        E +  + GI +K   KI 
Sbjct: 149 ATLEELQGISGVGPSKAEAIIAYREENGRFQTI--------EDITKVSGIGEKSFEKIK 199


>gi|119716613|ref|YP_923578.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp.
           JS614]
 gi|166230576|sp|A1SJA6|RUVA_NOCSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|119537274|gb|ABL81891.1| Holliday junction DNA helicase subunit RuvA [Nocardioides sp.
           JS614]
          Length = 200

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNH 606
           K  +  L   +G+GP   + +L    +   +  +      +TL  + GI +K A +I   
Sbjct: 68  KQTFELLQTASGVGPKLAQAMLAVL-STDDLRLAITGDDVKTLTRVPGIGQKGAQRIILE 126

Query: 607 FHKNTSHTPT 616
              +    PT
Sbjct: 127 LR-DRIGAPT 135


>gi|125973275|ref|YP_001037185.1| DNA repair protein RadC [Clostridium thermocellum ATCC 27405]
 gi|281417478|ref|ZP_06248498.1| DNA repair protein RadC [Clostridium thermocellum JW20]
 gi|125713500|gb|ABN51992.1| DNA repair protein RadC [Clostridium thermocellum ATCC 27405]
 gi|281408880|gb|EFB39138.1| DNA repair protein RadC [Clostridium thermocellum JW20]
          Length = 223

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600
           LL  +G++  +  + P+ LA+  GI +  A
Sbjct: 47  LLNRYGSLSGVFEADPKDLATTPGIGENSA 76


>gi|293381236|ref|ZP_06627243.1| comEA protein [Lactobacillus crispatus 214-1]
 gi|290922204|gb|EFD99199.1| comEA protein [Lactobacillus crispatus 214-1]
          Length = 229

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 555 SPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L ++ GIG  +   ++      G+ K I     E L  + GI +K    + +  
Sbjct: 177 TELQKLTGIGQKKAEQIIAYREQNGSFKKI-----EDLMQVSGIGEKTFASLKDQL 227


>gi|289578078|ref|YP_003476705.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter italicus Ab9]
 gi|289527791|gb|ADD02143.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermoanaerobacter italicus Ab9]
          Length = 201

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L+ + GIGP+    +++ F    G  K I     E + ++  I  K+  +I +
Sbjct: 145 ATKEELETLPGIGPVTAERIIE-FRENKGFFKKI-----EDIMNVPRIGPKMFEQIKD 196



 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ ++ E L ++ GI    A +I   F +N  
Sbjct: 141 NINTATKEELETLPGIGPVTAERIIE-FRENKG 172


>gi|229829629|ref|ZP_04455698.1| hypothetical protein GCWU000342_01726 [Shuttleworthia satelles DSM
           14600]
 gi|229791618|gb|EEP27732.1| hypothetical protein GCWU000342_01726 [Shuttleworthia satelles DSM
           14600]
          Length = 750

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKI 603
           I G+GP     ++++F      +    P  L+ I+GIS+K+A  I
Sbjct: 87  IKGVGPKLAARIVKTFKGDTFRVMEEDPTRLSKIKGISEKMALDI 131


>gi|269798022|ref|YP_003311922.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Veillonella parvula DSM 2008]
 gi|269094651|gb|ACZ24642.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Veillonella parvula DSM 2008]
          Length = 189

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    LD + GIGP   + + +       F +++ I          ++GI   +  KI +
Sbjct: 134 ATAKELDSLPGIGPAMAKKIEEYRSQKGPFTSIEGIKG--------VKGIGDGVFKKIKD 185


>gi|148269895|ref|YP_001244355.1| Holliday junction DNA helicase RuvA [Thermotoga petrophila RKU-1]
 gi|166231455|sp|A5IKQ6|RUVA_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|147735439|gb|ABQ46779.1| Holliday junction DNA helicase subunit RuvA [Thermotoga petrophila
           RKU-1]
          Length = 188

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGT-------VKMISRSSPETLASIEGISKKIAC 601
           RKK  +  L +++ +GP     ++    +       V MI+    E L+ + GISKK A 
Sbjct: 67  RKKELFLSLTKVSRLGPKTALKII----SNEDAETLVTMIASQDVEGLSKLPGISKKTAE 122

Query: 602 KIYNHFHKN 610
           +I       
Sbjct: 123 RIVMELKDE 131


>gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
 gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
          Length = 949

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 220


>gi|269216143|ref|ZP_06159997.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122]
 gi|269130402|gb|EEZ61480.1| holliday junction DNA helicase RuvA [Slackia exigua ATCC 700122]
          Length = 196

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKIYNH 606
            K+ +  L  ++ +GP      L +F     +  +       ++ + GI KK+A +I   
Sbjct: 68  SKSLFEKLIGVSSVGPKIALAALSTFKASEFIAAVLSGDAAAVSKVPGIGKKMAQRIILE 127

Query: 607 FHKNTSHT 614
              + +  
Sbjct: 128 LKGSLADA 135


>gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2]
 gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2]
          Length = 881

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKEYGSVEGIYE 222


>gi|257793715|ref|ZP_05642694.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781]
 gi|258410986|ref|ZP_05681266.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763]
 gi|258420213|ref|ZP_05683168.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719]
 gi|258438215|ref|ZP_05689499.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A9299]
 gi|258443678|ref|ZP_05692017.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115]
 gi|258446885|ref|ZP_05695039.1| Holliday junction DNA helicase [Staphylococcus aureus A6300]
 gi|258448799|ref|ZP_05696911.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A6224]
 gi|295406763|ref|ZP_06816568.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819]
 gi|297245654|ref|ZP_06929519.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796]
 gi|257787687|gb|EEV26027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9781]
 gi|257840136|gb|EEV64600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9763]
 gi|257843924|gb|EEV68318.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9719]
 gi|257848259|gb|EEV72250.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A9299]
 gi|257851084|gb|EEV75027.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8115]
 gi|257854460|gb|EEV77409.1| Holliday junction DNA helicase [Staphylococcus aureus A6300]
 gi|257858077|gb|EEV80966.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           A6224]
 gi|294968510|gb|EFG44534.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8819]
 gi|297177305|gb|EFH36557.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8796]
          Length = 203

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + R+        L    GI KK A +I
Sbjct: 71  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKRAIENENDTYLTKFPGIGKKTARQI 126


>gi|227833675|ref|YP_002835382.1| hypothetical protein cauri_1851 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184680|ref|ZP_06044101.1| hypothetical protein CaurA7_11854 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454691|gb|ACP33444.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 200

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 8/57 (14%)

Query: 556 PLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L E+ GIGP     ++      G+       + E L  + GI      ++ +    
Sbjct: 149 ELTELPGIGPATAAAIIAHREEVGSFT-----TVEQLMDVSGIGPAKFAQLKDKVRP 200


>gi|253698904|ref|YP_003020093.1| PHP domain protein [Geobacter sp. M21]
 gi|251773754|gb|ACT16335.1| PHP domain protein [Geobacter sp. M21]
          Length = 578

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 553 AYSPLDEINGIGP---LRKRLLLQSFGTV---KMISR---SSPETLASIEGISKKIACKI 603
            +  L EI G+G     R    LQ+ GT+   + + +   +    L +I  +  K A  I
Sbjct: 48  THKELLEIPGVGADLAARIEEYLQT-GTMAAYEELKQEVPAGVFALLAIPDLGPKTAKAI 106

Query: 604 YNHFH 608
           Y+   
Sbjct: 107 YDALQ 111


>gi|38112301|gb|AAR11240.1| excision repair protein [Macaca mulatta]
          Length = 227

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 19/33 (57%)

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +++ +  +S E LA   G+  + A ++++  H+
Sbjct: 192 SLEQLIAASREDLALCPGLGPQKARRLFDVLHE 224


>gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51]
 gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 873

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  +G+V+ +     + +  I G       K+  +   NT   
Sbjct: 191 GVPGVGEKTALKLLWEYGSVENV----LDNIDKISG------KKLQENLRNNTDKA 236


>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 911

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 11/55 (20%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMIS-RSSPETLASIEG-ISKKIACKIYNHF 607
           D I G+   GP      L+ +G+++ +   +S      I+G I +K+A  + +H 
Sbjct: 188 DNIPGVEGCGPKTAVKWLEKYGSLQGVMDNAS-----EIKGKIGEKLAAAL-DHL 236


>gi|260593725|ref|NP_001159521.1| DNA excision repair protein ERCC-1 isoform 3 [Homo sapiens]
 gi|15146354|dbj|BAB62810.1| excision repair protein 1 [Homo sapiens]
 gi|119577753|gb|EAW57349.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence), isoform CRA_b [Homo sapiens]
          Length = 273

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 19/33 (57%)

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +++ +  +S E LA   G+  + A ++++  H+
Sbjct: 235 SLEQLIAASREDLALCPGLGPQKARRLFDVLHE 267


>gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
 gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
          Length = 873

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  +G+V+ +     + +  I G       K+  +   NT   
Sbjct: 191 GVPGVGEKTALKLLWEYGSVENV----LDNIDKISG------KKLQENLRNNTDKA 236


>gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833]
 gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833]
          Length = 893

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG--ISKKIACKIYN 605
           L  I G+G       ++ FG++  + R   + +    G  + + +A  I+N
Sbjct: 200 LPGIPGVGEKTAARWIKEFGSLDELVR-RVDEVKGKTGERLREHLAQVIHN 249


>gi|268610526|ref|ZP_06144253.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Ruminococcus flavefaciens FD-1]
          Length = 254

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            GIG      ++    ++        E L ++ GI +     +  + 
Sbjct: 109 PGIGEKLAEDIITYRSSIGGFRN--IEELMNVSGIGESKFEAVREYI 153


>gi|229591993|ref|YP_002874112.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens SBW25]
 gi|254781395|sp|C3JXX6|DNLJ_PSEFS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|229363859|emb|CAY51325.1| DNA ligase [Pseudomonas fluorescens SBW25]
          Length = 785

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  +++ + ++ PE L  +  +  ++A +I++ F
Sbjct: 532 GIPDVGEETAKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFF 580


>gi|299821685|ref|ZP_07053573.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
 gi|299817350|gb|EFI84586.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
          Length = 290

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETL--ASIEGISKKIA 600
            + GIG      L+Q+FG+++ +  ++ E L  A    I + +A
Sbjct: 198 GVRGIGEKTALTLIQTFGSIEGVL-ANLEQLKPAQKRKIQEDLA 240


>gi|183601930|ref|ZP_02963299.1| DNA-damage-inducible protein P [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219682844|ref|YP_002469227.1| DNA-damage-inducible protein P [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190420|ref|YP_002967814.1| DNA-damage-inducible protein P [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195826|ref|YP_002969381.1| DNA-damage-inducible protein P [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218815|gb|EDT89457.1| DNA-damage-inducible protein P [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620494|gb|ACL28651.1| DNA-damage-inducible protein P [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240248812|gb|ACS45752.1| DNA-damage-inducible protein P [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250380|gb|ACS47319.1| DNA-damage-inducible protein P [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178143|gb|ADC85389.1| DNA polymerase IV [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793407|gb|ADG32942.1| DNA-damage-inducible protein P [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 438

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           PL  I G+GP +++ L  ++G  +V  ++R S E L    G SK  A  ++   H     
Sbjct: 195 PLRGIPGLGPAQEKRL-NAWGINSVSQLARCSVEELIQATG-SKAAATHLWEASHGIDPC 252

Query: 614 TPT 616
           T T
Sbjct: 253 TLT 255


>gi|283797226|ref|ZP_06346379.1| competence protein CelA [Clostridium sp. M62/1]
 gi|291075075|gb|EFE12439.1| competence protein CelA [Clostridium sp. M62/1]
          Length = 264

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  + GIG  R   +++     G+ K I     E +  + GI +    KI +
Sbjct: 209 ASRGELMTLTGIGQARADDIIRYRQEHGSFKRI-----EDIMKVSGIKEAAFQKIKD 260


>gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
 gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
          Length = 879

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F TV+ +     E +  + G  KK+  K+  +
Sbjct: 194 GVPGVGEKTAIKLLKQFETVENL----LEHIDEVNG--KKLKEKLEEY 235


>gi|158521025|ref|YP_001528895.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Desulfococcus oleovorans Hxd3]
 gi|158509851|gb|ABW66818.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfococcus oleovorans Hxd3]
          Length = 114

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           G +  I+ +S + L ++ G+ K+IA +I  +
Sbjct: 46  GQLVNINTASVDELTALTGVGKEIAQRIIEY 76


>gi|15924632|ref|NP_372166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927222|ref|NP_374755.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283321|ref|NP_646409.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486475|ref|YP_043696.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|148268122|ref|YP_001247065.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394190|ref|YP_001316865.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979960|ref|YP_001442219.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253317207|ref|ZP_04840420.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006427|ref|ZP_05145028.2| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258453755|ref|ZP_05701730.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937]
 gi|269203267|ref|YP_003282536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893146|ref|ZP_06301380.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117]
 gi|282928277|ref|ZP_06335882.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102]
 gi|296275927|ref|ZP_06858434.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207637|ref|ZP_06924072.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911720|ref|ZP_07129163.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|54039574|sp|P66749|RUVA_STAAN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54039575|sp|P66750|RUVA_STAAW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|54042203|sp|P66748|RUVA_STAAM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|56749510|sp|Q6G8S7|RUVA_STAAS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166200268|sp|A7X358|RUVA_STAA1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045773|sp|A6U2B0|RUVA_STAA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045774|sp|A5ITG6|RUVA_STAA9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|13701440|dbj|BAB42734.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247414|dbj|BAB57804.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204761|dbj|BAB95457.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244918|emb|CAG43379.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|147741191|gb|ABQ49489.1| Holliday junction DNA helicase subunit RuvA [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946642|gb|ABR52578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722095|dbj|BAF78512.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257864075|gb|EEV86828.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5937]
 gi|262075557|gb|ACY11530.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590084|gb|EFB95166.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A10102]
 gi|282764464|gb|EFC04590.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A8117]
 gi|285817324|gb|ADC37811.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus
           04-02981]
 gi|296887654|gb|EFH26552.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300885966|gb|EFK81168.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|312830028|emb|CBX34870.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129927|gb|EFT85917.1| holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727620|gb|EGG64076.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 200

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + R+        L    GI KK A +I
Sbjct: 68  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKRAIENENDTYLTKFPGIGKKTARQI 123


>gi|328947954|ref|YP_004365291.1| DNA ligase [Treponema succinifaciens DSM 2489]
 gi|328448278|gb|AEB13994.1| DNA ligase [Treponema succinifaciens DSM 2489]
          Length = 651

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +I GIG      L+   F T++ I  +  E +A +   ++ +A  +     +N   
Sbjct: 500 DIEGIGETVVETLIAGGFNTLQKIFDAKEEEIAGVYRFAETLAHTLVEGIQENREE 555


>gi|227877356|ref|ZP_03995427.1| competence protein ComEA [Lactobacillus crispatus JV-V01]
 gi|256842915|ref|ZP_05548403.1| competence protein ComEA [Lactobacillus crispatus 125-2-CHN]
 gi|256848710|ref|ZP_05554144.1| competence protein ComEA [Lactobacillus crispatus MV-1A-US]
 gi|262045882|ref|ZP_06018846.1| competence protein ComEA [Lactobacillus crispatus MV-3A-US]
 gi|227863024|gb|EEJ70472.1| competence protein ComEA [Lactobacillus crispatus JV-V01]
 gi|256614335|gb|EEU19536.1| competence protein ComEA [Lactobacillus crispatus 125-2-CHN]
 gi|256714249|gb|EEU29236.1| competence protein ComEA [Lactobacillus crispatus MV-1A-US]
 gi|260573841|gb|EEX30397.1| competence protein ComEA [Lactobacillus crispatus MV-3A-US]
          Length = 229

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 555 SPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L ++ GIG  +   ++      G+ K I     E L  + GI +K    + +  
Sbjct: 177 TELQKLTGIGQKKAEQIIAYREQNGSFKKI-----EDLMQVSGIGEKTFASLKDQL 227


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 7/40 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            + GIG      L+Q FG++  +          +E I+KK
Sbjct: 190 GVPGIGEKTALALIQEFGSLDNLYD-------RVETITKK 222


>gi|89898348|ref|YP_515458.1| transcription elongation factor NusA [Chlamydophila felis Fe/C-56]
 gi|89331720|dbj|BAE81313.1| N utilization protein A [Chlamydophila felis Fe/C-56]
          Length = 434

 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           PLD   GI  L  + L+ + + T++ +  +S   LAS+ GIS ++A KI  
Sbjct: 367 PLDM-EGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILE 416


>gi|332967876|gb|EGK06971.1| DNA-directed DNA polymerase I [Desmospora sp. 8437]
          Length = 881

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            I G+G      LL  +G+V+ +     + +  + G  KK+  ++
Sbjct: 191 GIPGVGEKTALKLLHQYGSVENV----LDHIDHLPG--KKLKERV 229


>gi|302389938|ref|YP_003825759.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani
           DSM 16646]
 gi|302200566|gb|ADL08136.1| Holliday junction DNA helicase RuvA [Thermosediminibacter oceani
           DSM 16646]
          Length = 192

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 557 LDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           L++++G+GP     +L     +   +V  I     +TL S+ GI  K A KI        
Sbjct: 76  LNKVSGVGPRVALSILSWLEPKRLKSV--IMSEDVKTLTSVPGIGNKTAQKIIFELKDKI 133

Query: 612 SHTP 615
            + P
Sbjct: 134 KNLP 137


>gi|301060127|ref|ZP_07200994.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2]
 gi|300445639|gb|EFK09537.1| Holliday junction DNA helicase RuvA [delta proteobacterium NaphS2]
          Length = 200

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           K+ +  L  ++GIGP     +L   G    ++ I+      L +I GI +K A +I
Sbjct: 69  KSLFLMLVSVSGIGPKLSANILSGMGAEELLRAIAAGDAPRLQAIPGIGRKTAERI 124


>gi|295692720|ref|YP_003601330.1| competence protein comea [Lactobacillus crispatus ST1]
 gi|295030826|emb|CBL50305.1| Competence protein ComEA [Lactobacillus crispatus ST1]
          Length = 229

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 555 SPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L ++ GIG  +   ++      G+ K I     E L  + GI +K    + +  
Sbjct: 177 TELQKLTGIGQKKAEQIIAYREQNGSFKKI-----EDLMQVSGIGEKTFASLKDQL 227


>gi|258424067|ref|ZP_05686949.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635]
 gi|294848671|ref|ZP_06789417.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754]
 gi|257845688|gb|EEV69720.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9635]
 gi|294824697|gb|EFG41120.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9754]
          Length = 203

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + R+        L    GI KK A +I
Sbjct: 71  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKRAIENENDTYLTKFPGIGKKTARQI 126


>gi|229828351|ref|ZP_04454420.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM
           14600]
 gi|229792945|gb|EEP29059.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM
           14600]
          Length = 675

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   + +R     + L  I  +G      L+  +  +  +  +  E L  I  I +K A
Sbjct: 502 AIEDSKSQRPTRLLAGL-GIRNVGLSTAAALMAVYPDLMDLMHAGFEDLQGIPDIGEKTA 560

Query: 601 CKIYNHF-HKN 610
             I + F H++
Sbjct: 561 ADIVHFFAHED 571


>gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802]
 gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802]
          Length = 972

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG-ISKKIACKIYNHFH 608
            I+GIG      LL+ +GT++ +       L  I+G ++KK+   +    H
Sbjct: 209 GIDGIGEKTAVKLLKEYGTIQEVYN----NLDKIKGTLNKKLKDGVKEAEH 255


>gi|52081109|ref|YP_079900.1| hypothetical protein BL02085 [Bacillus licheniformis ATCC 14580]
 gi|52786487|ref|YP_092316.1| hypothetical protein BLi02752 [Bacillus licheniformis ATCC 14580]
 gi|319644934|ref|ZP_07999167.1| late competence protein ComEA [Bacillus sp. BT1B_CT2]
 gi|18266364|gb|AAL67524.1|AF459916_1 late competence protein ComEA [Bacillus licheniformis]
 gi|52004320|gb|AAU24262.1| ComEA [Bacillus licheniformis ATCC 14580]
 gi|52348989|gb|AAU41623.1| ComEA [Bacillus licheniformis ATCC 14580]
 gi|317392743|gb|EFV73537.1| late competence protein ComEA [Bacillus sp. BT1B_CT2]
          Length = 209

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 14/58 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L  I GIGP +   +++       F         + E + ++ GI +K   +I +  
Sbjct: 157 ELQAIPGIGPSKAEAVIEYREENGPFH--------TVEDITNVSGIGEKSFERIKSAI 206



 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S E L +I GI    A  +  +
Sbjct: 149 NINTASSEELQAIPGIGPSKAEAVIEY 175


>gi|87118957|ref|ZP_01074855.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121]
 gi|86165348|gb|EAQ66615.1| Holliday junction DNA helicase RuvA [Marinomonas sp. MED121]
          Length = 199

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 546 RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACK 602
           +++ ++A +  L ++NG+GP     +L S  +   +  +  S    L  I G+ KK A +
Sbjct: 64  KQKDERALFRILIKVNGVGPKMALSVLSSMSSDELIANVQDSDVTALTRIPGVGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|288800415|ref|ZP_06405873.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332628|gb|EFC71108.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 161

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 19  AGRVLYVGKAYNLQKRIKSYMH 40
              ++Y+GKA +L+KR+ SY+ 
Sbjct: 79  NEAIMYIGKATSLKKRLGSYLR 100


>gi|297570214|ref|YP_003691558.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926129|gb|ADH86939.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 85

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L  + GIGP+    +++       F        +S E L  + GI  +    + +
Sbjct: 32  QLQSLPGIGPVTAAAIIEYRENNGEF--------ASIEELVQVRGIGSRTLESLRD 79


>gi|239637553|ref|ZP_04678525.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603]
 gi|239596771|gb|EEQ79296.1| holliday junction DNA helicase RuvA [Staphylococcus warneri L37603]
          Length = 200

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + ++        L    GI KK A +I
Sbjct: 68  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKQAIENENDTYLTKFPGIGKKTARQI 123


>gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803]
 gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|171913964|ref|ZP_02929434.1| putative protein required for chromosomal DNA transformation
           [Verrucomicrobium spinosum DSM 4136]
          Length = 367

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-VKMISR-SSPETLASIEGISKKIACKI 603
            L+ +  IGP+R R L++ FG  V+ +S  +S   +  +EG  +++A  +
Sbjct: 9   VLNLLPKIGPVRVRRLVEWFGGPVEALSALAS--DIKRVEGFGEELAQVV 56


>gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
 gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
          Length = 875

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      L++ + +++ +     E + +I+G  KK+   ++ +
Sbjct: 193 GVPGIGEKTAFKLIKEYKSIETV----LENIENIKG--KKLKENLHEY 234


>gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali]
          Length = 875

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FG+V+ I   S + ++SI+
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGSVENIFN-SLDQVSSIK 223


>gi|315127276|ref|YP_004069279.1| competence protein [Pseudoalteromonas sp. SM9913]
 gi|315015790|gb|ADT69128.1| competence protein [Pseudoalteromonas sp. SM9913]
          Length = 97

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 14/50 (28%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKI 599
            L ++ G+G  + + ++        F ++        E LA ++G+ KK+
Sbjct: 46  QLIKLPGVGKKKAQAIIDYRETNGDFSSL--------EDLAKVKGVGKKM 87


>gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 866

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            + G+G      LLQS+G+++ I  
Sbjct: 195 GVPGVGEKTASKLLQSYGSIEGIME 219


>gi|259417142|ref|ZP_05741061.1| DNA repair protein RadC [Silicibacter sp. TrichCH4B]
 gi|259346048|gb|EEW57862.1| DNA repair protein RadC [Silicibacter sp. TrichCH4B]
          Length = 271

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           RLLL  FG +  +  +SPE L  ++GI + +
Sbjct: 95  RLLLDHFGDLNRVITASPERLGDVQGIGQAV 125


>gi|298528514|ref|ZP_07015918.1| helicase, RecD/TraA family [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298512166|gb|EFI36068.1| helicase, RecD/TraA family [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 732

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606
           I GIGP+  + ++  FG  T+ +I   + + L  ++GI +K   KI   
Sbjct: 98  IKGIGPVMAKKIVSLFGDKTLDIIEHET-DRLTEVDGIGQKRIEKIKKA 145


>gi|167847253|ref|ZP_02472761.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei B7210]
          Length = 162

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           ++ +  L +I G+G      +L   G +V  +S++ + +    L  + GI KK A +
Sbjct: 38  RSTFRELLKITGVGARMALAVLS--GMSVAELSQAVTLQDAARLTRVPGIGKKTAER 92


>gi|167837835|ref|ZP_02464718.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis MSMB43]
          Length = 193

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           ++ +  L +I G+G      +L   G +V  +S++ + +    L  + GI KK A +
Sbjct: 69  RSTFRELLKITGVGARMALAVLS--GMSVAELSQAVTLQDAARLTRVPGIGKKTAER 123


>gi|163857461|ref|YP_001631759.1| DNA repair protein RadC [Bordetella petrii DSM 12804]
 gi|229485545|sp|A9IU27|Y3149_BORPD RecName: Full=UPF0758 protein Bpet3149
 gi|163261189|emb|CAP43491.1| DNA repair protein radC homolog [Bordetella petrii]
          Length = 225

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            LL  +G ++ +  +SP+ L S+ G+    A
Sbjct: 50  QLLHRYGGLRGLFAASPQELMSLPGLGAAKA 80


>gi|83719212|ref|YP_441795.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
 gi|167580615|ref|ZP_02373489.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis TXDOH]
 gi|167618721|ref|ZP_02387352.1| Holliday junction DNA helicase motor protein [Burkholderia
           thailandensis Bt4]
 gi|257137961|ref|ZP_05586223.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
 gi|123753836|sp|Q2SZ54|RUVA_BURTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|83653037|gb|ABC37100.1| Holliday junction DNA helicase RuvA [Burkholderia thailandensis
           E264]
          Length = 193

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           ++ +  L +I G+G      +L   G +V  +S++ + +    L  + GI KK A +
Sbjct: 69  RSTFRELLKITGVGARMALAVLS--GMSVAELSQAVTLQDAARLTRVPGIGKKTAER 123


>gi|73667265|ref|YP_303281.1| DNA repair protein RadC [Ehrlichia canis str. Jake]
 gi|72394406|gb|AAZ68683.1| DNA repair protein RadC [Ehrlichia canis str. Jake]
          Length = 230

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + L++ FG+   +  +    L  + GI +     I 
Sbjct: 54  KRLIKHFGSFSKVFFADFNQLTEVHGIGEASVSAIL 89


>gi|57650523|ref|YP_186536.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751240|ref|YP_416981.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus RF122]
 gi|87160146|ref|YP_494293.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195453|ref|YP_500257.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221756|ref|YP_001332578.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509868|ref|YP_001575527.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253733107|ref|ZP_04867272.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258450532|ref|ZP_05698594.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948]
 gi|262048631|ref|ZP_06021514.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|262051292|ref|ZP_06023516.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|282920191|ref|ZP_06327916.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765]
 gi|284024698|ref|ZP_06379096.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 132]
 gi|304380761|ref|ZP_07363429.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|71153735|sp|Q5HFC1|RUVA_STAAC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123098028|sp|Q2FXT3|RUVA_STAA8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123740965|sp|Q2YT88|RUVA_STAAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123763287|sp|Q2FG85|RUVA_STAA3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|172048928|sp|A6QHI4|RUVA_STAAE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|189045775|sp|A8Z2H0|RUVA_STAAT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|57284709|gb|AAW36803.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656771|emb|CAI81200.1| Holliday junction DNA helicase [Staphylococcus aureus RF122]
 gi|87126120|gb|ABD20634.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203011|gb|ABD30821.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374556|dbj|BAF67816.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368677|gb|ABX29648.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728863|gb|EES97592.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257861690|gb|EEV84489.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A5948]
 gi|259160929|gb|EEW45949.1| holliday junction DNA helicase [Staphylococcus aureus 930918-3]
 gi|259163278|gb|EEW47837.1| holliday junction DNA helicase [Staphylococcus aureus D30]
 gi|282594539|gb|EFB99524.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus A9765]
 gi|283470918|emb|CAQ50129.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus ST398]
 gi|298694921|gb|ADI98143.1| Holliday junction DNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333315|gb|ADL23508.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|304340698|gb|EFM06630.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315198657|gb|EFU28985.1| crossover junction endodeoxyribonuclease [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140471|gb|EFW32325.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144010|gb|EFW35779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323440805|gb|EGA98514.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O11]
 gi|323442846|gb|EGB00471.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus O46]
 gi|329314316|gb|AEB88729.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329728425|gb|EGG64862.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733154|gb|EGG69491.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 200

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + R+        L    GI KK A +I
Sbjct: 68  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKRAIENENDTYLTKFPGIGKKTARQI 123


>gi|33594301|ref|NP_881945.1| Holliday junction DNA helicase motor protein [Bordetella pertussis
           Tohama I]
 gi|33602977|ref|NP_890537.1| Holliday junction DNA helicase motor protein [Bordetella
           bronchiseptica RB50]
 gi|44888431|sp|Q7VTT9|RUVA_BORPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|44888438|sp|Q7WGB6|RUVA_BORBR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33564376|emb|CAE43681.1| holliday junction DNA helicase [Bordetella pertussis Tohama I]
 gi|33568608|emb|CAE34366.1| holliday junction DNA helicase [Bordetella bronchiseptica RB50]
 gi|332383712|gb|AEE68559.1| Holliday junction DNA helicase RuvA [Bordetella pertussis CS]
          Length = 190

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKIY 604
           ++ +  L ++ GIG      +L   G +V  +S++ + +    L  + GI KK A ++ 
Sbjct: 69  RSTFRELIKVTGIGARTALAVLS--GLSVAELSQAITLQETGRLTRVPGIGKKTAERLL 125


>gi|33598084|ref|NP_885727.1| Holliday junction DNA helicase motor protein [Bordetella
           parapertussis 12822]
 gi|44888435|sp|Q7W4T9|RUVA_BORPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33566642|emb|CAE38852.1| holliday junction DNA helicase [Bordetella parapertussis]
          Length = 190

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACKIY 604
           ++ +  L ++ GIG      +L   G +V  +S++ + +    L  + GI KK A ++ 
Sbjct: 69  RSTFRELIKVTGIGARTALAVLS--GLSVAELSQAITLQETGRLTRVPGIGKKTAERLL 125


>gi|53720506|ref|YP_109492.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           K96243]
 gi|53726199|ref|YP_103912.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           23344]
 gi|67642316|ref|ZP_00441074.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse
           4]
 gi|76809765|ref|YP_334777.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710b]
 gi|121600711|ref|YP_991618.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1]
 gi|124384917|ref|YP_001027114.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10229]
 gi|126438536|ref|YP_001060376.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668]
 gi|126450738|ref|YP_001082059.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10247]
 gi|126453529|ref|YP_001067637.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 1106a]
 gi|134280414|ref|ZP_01767125.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305]
 gi|167000504|ref|ZP_02266316.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20]
 gi|167721174|ref|ZP_02404410.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei DM98]
 gi|167740150|ref|ZP_02412924.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 14]
 gi|167817363|ref|ZP_02449043.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 91]
 gi|167825771|ref|ZP_02457242.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 9]
 gi|167895840|ref|ZP_02483242.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 7894]
 gi|167904231|ref|ZP_02491436.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912490|ref|ZP_02499581.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei 112]
 gi|167920442|ref|ZP_02507533.1| Holliday junction DNA helicase motor protein [Burkholderia
           pseudomallei BCC215]
 gi|217421175|ref|ZP_03452680.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576]
 gi|226198378|ref|ZP_03793947.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813764|ref|YP_002898215.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           MSHR346]
 gi|242317479|ref|ZP_04816495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106b]
 gi|254178754|ref|ZP_04885408.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           10399]
 gi|254180688|ref|ZP_04887286.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1655]
 gi|254191517|ref|ZP_04898020.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194815|ref|ZP_04901245.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13]
 gi|254202624|ref|ZP_04908987.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH]
 gi|254207963|ref|ZP_04914313.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU]
 gi|254260441|ref|ZP_04951495.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710a]
 gi|254299226|ref|ZP_04966676.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           406e]
 gi|254355897|ref|ZP_04972175.1| Holliday junction DNA helicase RuvA [Burkholderia mallei
           2002721280]
 gi|81379105|sp|Q63QX6|RUVA_BURPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|81604343|sp|Q62HA8|RUVA_BURMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90134634|sp|Q3JNS6|RUVA_BURP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230525|sp|A3MP73|RUVA_BURM7 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230526|sp|A2S595|RUVA_BURM9 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230527|sp|A1V065|RUVA_BURMS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230528|sp|A3NZ66|RUVA_BURP0 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230529|sp|A3NDF5|RUVA_BURP6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|52210920|emb|CAH36908.1| holliday junction DNA helicase [Burkholderia pseudomallei K96243]
 gi|52429622|gb|AAU50215.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           23344]
 gi|76579218|gb|ABA48693.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710b]
 gi|121229521|gb|ABM52039.1| Holliday junction DNA helicase RuvA [Burkholderia mallei SAVP1]
 gi|124292937|gb|ABN02206.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10229]
 gi|126218029|gb|ABN81535.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 668]
 gi|126227171|gb|ABN90711.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106a]
 gi|126243608|gb|ABO06701.1| Holliday junction DNA helicase RuvA [Burkholderia mallei NCTC
           10247]
 gi|134248421|gb|EBA48504.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 305]
 gi|147746871|gb|EDK53948.1| Holliday junction DNA helicase RuvA [Burkholderia mallei FMH]
 gi|147751857|gb|EDK58924.1| Holliday junction DNA helicase RuvA [Burkholderia mallei JHU]
 gi|148024872|gb|EDK83050.1| Holliday junction DNA helicase RuvA [Burkholderia mallei
           2002721280]
 gi|157808883|gb|EDO86053.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           406e]
 gi|157939188|gb|EDO94858.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160694668|gb|EDP84676.1| Holliday junction DNA helicase RuvA [Burkholderia mallei ATCC
           10399]
 gi|169651564|gb|EDS84257.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei S13]
 gi|184211227|gb|EDU08270.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1655]
 gi|217396587|gb|EEC36604.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei 576]
 gi|225929561|gb|EEH25579.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505707|gb|ACQ98025.1| holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           MSHR346]
 gi|238523444|gb|EEP86882.1| Holliday junction DNA helicase RuvA [Burkholderia mallei GB8 horse
           4]
 gi|242140718|gb|EES27120.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1106b]
 gi|243063559|gb|EES45745.1| Holliday junction DNA helicase RuvA [Burkholderia mallei PRL-20]
 gi|254219130|gb|EET08514.1| Holliday junction DNA helicase RuvA [Burkholderia pseudomallei
           1710a]
          Length = 193

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           ++ +  L +I G+G      +L   G +V  +S++ + +    L  + GI KK A +
Sbjct: 69  RSTFRELLKITGVGARMALAVLS--GMSVAELSQAVTLQDAARLTRVPGIGKKTAER 123


>gi|299536301|ref|ZP_07049614.1| 5'-3' exonuclease [Lysinibacillus fusiformis ZC1]
 gi|298728287|gb|EFI68849.1| 5'-3' exonuclease [Lysinibacillus fusiformis ZC1]
          Length = 295

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            + GIGP +   L+Q++G++  I  +S   L 
Sbjct: 197 GVKGIGPKQALTLIQTYGSIDKIL-ASLGELK 227


>gi|326792059|ref|YP_004309880.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427]
 gi|326542823|gb|ADZ84682.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427]
          Length = 649

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 559 EINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            I  +G    +L+ + F   +  + ++  E L +I+G+   IA +   +F+   +  
Sbjct: 494 GIAQVGLGTAKLICKHFNNELDEMMKARYEQLITIDGVGPVIAKEFEEYFNLEENKA 550


>gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22]
 gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A]
 gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22]
          Length = 949

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLISEFGSIENLLE 220


>gi|271963692|ref|YP_003337888.1| DNA repair protein RadC [Streptosporangium roseum DSM 43021]
 gi|270506867|gb|ACZ85145.1| DNA repair protein RadC [Streptosporangium roseum DSM 43021]
          Length = 218

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L+   G ++ ++RS    L S+ GI    A ++   FH
Sbjct: 50  LIAHCGDLRGLARSDAHRLMSVPGIGPAKAARVIAAFH 87


>gi|260886383|ref|ZP_05897646.1| competence protein [Selenomonas sputigena ATCC 35185]
 gi|330838849|ref|YP_004413429.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Selenomonas sputigena ATCC 35185]
 gi|260863904|gb|EEX78404.1| competence protein [Selenomonas sputigena ATCC 35185]
 gi|329746613|gb|AEB99969.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Selenomonas sputigena ATCC 35185]
          Length = 198

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            LD++ GIGP   + +++       F +        PE +  ++GI      K+ +
Sbjct: 147 ELDKLPGIGPAMAKRIIEYRTENGAFQS--------PEEIKRVKGIGDAKYEKMKD 194


>gi|269126556|ref|YP_003299926.1| 5'-3' exonuclease [Thermomonospora curvata DSM 43183]
 gi|268311514|gb|ACY97888.1| 5'-3' exonuclease [Thermomonospora curvata DSM 43183]
          Length = 312

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + G+G      L+  FG+V  I ++
Sbjct: 202 LPGVPGVGDKTAAALVSRFGSVAGILQA 229


>gi|256826227|ref|YP_003150187.1| DNA integrity scanning protein DisA [Kytococcus sedentarius DSM
           20547]
 gi|256689620|gb|ACV07422.1| predicted nucleic-acid-binding protein (contains the HHH domain)
           [Kytococcus sedentarius DSM 20547]
          Length = 361

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L +I  + P+    ++  F  ++ +  ++ + L  IEGI    A  I    
Sbjct: 298 LSQIPRLPPVIVDRVVLHFDGLQHLLGATFDDLHEIEGIGDARARAIREGL 348


>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
          Length = 831

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  + GIG      LL+ +G+++ +     + L  ++   + +  KI  H 
Sbjct: 191 LPGVKGIGEKTALKLLKEWGSLENL----LKNLDRVK--PESVREKIRAHL 235


>gi|222055465|ref|YP_002537827.1| Ribonuclease H [Geobacter sp. FRC-32]
 gi|221564754|gb|ACM20726.1| Ribonuclease H [Geobacter sp. FRC-32]
          Length = 480

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            + GIG      L++ FG+++ +  
Sbjct: 191 GVPGIGEKTAAKLVRQFGSLEGVLE 215


>gi|332673720|gb|AEE70537.1| crossover junction ATP-dependent DNA helicase RuvA [Helicobacter
           pylori 83]
          Length = 183

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALAILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|330683931|gb|EGG95698.1| Holliday junction DNA helicase RuvA [Staphylococcus epidermidis
           VCU121]
          Length = 200

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + ++        L    GI KK A +I
Sbjct: 68  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKQAIENENDAYLTKFPGIGKKTARQI 123


>gi|329296361|ref|ZP_08253697.1| 5'-3' exonuclease [Plautia stali symbiont]
          Length = 255

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 7/38 (18%)

Query: 559 EING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           +I G   IGP   R LLQ FG+++ + +     L  + 
Sbjct: 178 KIPGVLGIGPKSARELLQQFGSLEALYQ----QLDQVP 211


>gi|328947934|ref|YP_004365271.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           succinifaciens DSM 2489]
 gi|328448258|gb|AEB13974.1| Holliday junction ATP-dependent DNA helicase ruvA [Treponema
           succinifaciens DSM 2489]
          Length = 206

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNH 606
           +A +  L +++GIGP     ++ +  +V  ++        + L  + G+  K A KI   
Sbjct: 69  RALFFDLLKVDGIGPKGAVKIMSNI-SVAALAEILDSGDVDALKKVPGVGPKTAGKIILS 127

Query: 607 FH 608
             
Sbjct: 128 LK 129


>gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065]
          Length = 875

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      L++ + +++ +     E + +I+G  KK+   ++ +
Sbjct: 193 GVPGIGEKTAFKLIKEYKSIETV----LENIENIKG--KKLKENLHEY 234


>gi|312977563|ref|ZP_07789310.1| competence protein comEA [Lactobacillus crispatus CTV-05]
 gi|310895302|gb|EFQ44369.1| competence protein comEA [Lactobacillus crispatus CTV-05]
          Length = 232

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 555 SPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L ++ GIG  +   ++      G+ K I     E L  + GI +K    + +  
Sbjct: 180 TELQKLTGIGQKKAEQIIAYREQNGSFKKI-----EDLMQVSGIGEKTFASLKDQL 230


>gi|282916910|ref|ZP_06324668.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770716|ref|ZP_06343608.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319397|gb|EFB49749.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460863|gb|EFC07953.1| Holliday junction ATP-dependent DNA helicase ruvA [Staphylococcus
           aureus subsp. aureus H19]
          Length = 200

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + R+        L    GI KK A +I
Sbjct: 68  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKRAIENENDTYLTKFPGIGKKTARQI 123


>gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|85714986|ref|ZP_01045971.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
 gi|85698183|gb|EAQ36055.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
          Length = 705

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 19/80 (23%)

Query: 549 RKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPE----------------TL 589
           R+K   + L     I  +G    +LL + +G ++    +  E                 L
Sbjct: 525 RRKIELNRLIFALGIRHVGEGNAKLLARHYGGIENFRSAMAEAAGAQTDEGNASEAYADL 584

Query: 590 ASIEGISKKIACKIYNHFHK 609
            +I GI + +A  +   F +
Sbjct: 585 NNIGGIGEIVANAVVEFFAE 604


>gi|95931133|ref|ZP_01313858.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM
           684]
 gi|95132823|gb|EAT14497.1| Holliday junction DNA helicase RuvA [Desulfuromonas acetoxidans DSM
           684]
          Length = 199

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKIYNH 606
           K  +  L  I+GIGP     +L        +     +     LA++ GI KK A ++   
Sbjct: 68  KQMFILLLSISGIGPKVALNILSHM-DCHALRDCLLQEDAKRLATLPGIGKKTADRLILE 126

Query: 607 FHK 609
             +
Sbjct: 127 LRE 129


>gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames]
 gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bacillus anthracis str. A2012]
 gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W]
 gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684]
 gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248]
 gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066]
 gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055]
 gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B]
 gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94]
 gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames]
 gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W]
 gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684]
 gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248]
          Length = 877

 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 230


>gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
 gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
          Length = 949

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLISEFGSIENLLE 220


>gi|256389644|ref|YP_003111208.1| SNF2-related protein [Catenulispora acidiphila DSM 44928]
 gi|256355870|gb|ACU69367.1| SNF2-related protein [Catenulispora acidiphila DSM 44928]
          Length = 727

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACK 602
           + ++  +  ++PE L  + GI  K A +
Sbjct: 83  YKSIADLLEATPEQLQQVPGIGTKGAER 110


>gi|207721439|ref|YP_002251880.1| DNA repair protein RadC [Ralstonia solanacearum MolK2]
 gi|207742580|ref|YP_002258972.1| dna repair protein radc homolog [Ralstonia solanacearum IPO1609]
 gi|206586599|emb|CAQ17186.1| dna repair protein radc homolog [Ralstonia solanacearum MolK2]
 gi|206593974|emb|CAQ60901.1| dna repair protein radc homolog [Ralstonia solanacearum IPO1609]
          Length = 224

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R LL  FG++  +  +S    ++I G+        Y   H
Sbjct: 48  RELLAHFGSLGRLCHASQGEFSAIHGMGPAK----YAQLH 83


>gi|218297065|ref|ZP_03497742.1| helix-hairpin-helix motif protein [Thermus aquaticus Y51MC23]
 gi|218242620|gb|EED09157.1| helix-hairpin-helix motif protein [Thermus aquaticus Y51MC23]
          Length = 102

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 584 SSPETLASIEGISKKIACKIYN 605
           +S E L ++ GI   +A +I  
Sbjct: 51  ASLEELEALPGIGPTLAQRIVE 72


>gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
 gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
          Length = 877

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 230


>gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488]
 gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum]
 gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488]
          Length = 877

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 230


>gi|145632564|ref|ZP_01788298.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 3655]
 gi|229845014|ref|ZP_04465151.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 6P18H1]
 gi|144986759|gb|EDJ93311.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 3655]
 gi|229812148|gb|EEP47840.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 6P18H1]
          Length = 204

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 15/88 (17%)

Query: 528 YFIQRLRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----M 580
           +F+  +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     
Sbjct: 50  HFV--VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYA 101

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFH 608
           I R     L  I G+ KK A ++     
Sbjct: 102 IEREELSKLTKIPGVGKKTAERLLVELK 129


>gi|58336856|ref|YP_193441.1| DNA ligase [Lactobacillus acidophilus NCFM]
 gi|227903415|ref|ZP_04021220.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
 gi|75357942|sp|Q5FLL4|DNLJ_LACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|58254173|gb|AAV42410.1| DNA ligase [Lactobacillus acidophilus NCFM]
 gi|227868891|gb|EEJ76312.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
          Length = 668

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 541 AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           AI   +K   +   + L  I+ +G    RL+ Q F  +  I     + LASI+ I   IA
Sbjct: 496 AIDNSKKNSVELLITGL-GIDHVGAKAARLIAQKFKNLAKIMSLGVQDLASIDTIGMTIA 554

Query: 601 CKIYNHF 607
             +  +F
Sbjct: 555 ESMTTYF 561


>gi|186686756|ref|YP_001869949.1| RecD/TraA family helicase [Nostoc punctiforme PCC 73102]
 gi|186469108|gb|ACC84908.1| helicase, RecD/TraA family [Nostoc punctiforme PCC 73102]
          Length = 748

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606
           K   S L  I  +GP+  + ++  FG  T+ +I     E L  ++GI+KK    I N 
Sbjct: 100 KYLGSGL--IKSVGPVTAKRIVAHFGLETLDIIEN-QIERLIEVQGIAKKRITLIKNA 154


>gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 877

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 230


>gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI]
 gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI]
          Length = 877

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 230


>gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
 gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 10/56 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LL  F +V+ +           + I +  A K+      +    
Sbjct: 207 GVPGVGEKTAIKLLNQFNSVEGVY----------DNIDEVTAKKLKEKLINSKDDA 252


>gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342]
 gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293]
 gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
 gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
          Length = 875

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      L++ + +++ +     E + +I+G  KK+   ++ +
Sbjct: 193 GVPGIGEKTAFKLIKEYKSIETV----LENIENIKG--KKLKENLHEY 234


>gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1]
 gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102]
 gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102]
          Length = 877

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 230


>gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187]
 gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187]
          Length = 877

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 230


>gi|149196455|ref|ZP_01873510.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit-helicase
           superfamily I member [Lentisphaera araneosa HTCC2155]
 gi|149140716|gb|EDM29114.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit-helicase
           superfamily I member [Lentisphaera araneosa HTCC2155]
          Length = 737

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 558 DEINGIGPLRKRLLLQSFGT--VKMISRSSPETLASIEGISKKIACKI 603
           + + GIG      +++ FG+    ++   +   L  + GI KK   +I
Sbjct: 106 ENLPGIGRKTAESIVKHFGSKTFDVLDNYT-SRLKEVPGIGKKRIDEI 152


>gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall]
 gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall]
          Length = 875

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      L++ + +++ +     E + +I+G  KK+   ++ +
Sbjct: 193 GVPGIGEKTAFKLIKEYKSIETV----LENIENIKG--KKLKENLHEY 234


>gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42]
 gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|87299109|emb|CAJ76232.1| competence transcription factor EA [Bacillus sp. Bt 23]
 gi|87299113|emb|CAJ76234.1| competence transcription factor EA [Bacillus sp. Am 12]
          Length = 109

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S E L +I GI    A  +  +
Sbjct: 66  NINTASSEELQAIPGIGPSKAEAVIEY 92


>gi|87299111|emb|CAJ76233.1| competence transcription factor EA [Bacillus sp. Bt 24]
          Length = 109

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S E L +I GI    A  +  +
Sbjct: 66  NINTASSEELQAIPGIGPSKAEAVIEY 92


>gi|319775819|ref|YP_004138307.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047]
 gi|317450410|emb|CBY86626.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3047]
          Length = 204

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSS 585
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     I R  
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYAIEREE 106

Query: 586 PETLASIEGISKKIACKIYNHFH 608
              L  I G+ KK A ++     
Sbjct: 107 LSKLTKIPGVGKKTAERLLVELK 129


>gi|319896645|ref|YP_004134838.1| holliday junction DNA helicase ruva [Haemophilus influenzae F3031]
 gi|317432147|emb|CBY80498.1| holliday junction DNA helicase RuvA [Haemophilus influenzae F3031]
          Length = 204

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSS 585
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     I R  
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYAIEREE 106

Query: 586 PETLASIEGISKKIACKIYNHFH 608
              L  I G+ KK A ++     
Sbjct: 107 LSKLTKIPGVGKKTAERLLVELK 129


>gi|312622179|ref|YP_004023792.1| DNA ligase, nad-dependent [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202646|gb|ADQ45973.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 673

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    + L +   ++  +   + E L S+    +K+A  +   F ++ +
Sbjct: 510 GIRHIGQKAAKTLAEHISSIDDLFTITEEQLLSLPDFGEKMAKSVVTFFRQDQT 563


>gi|312127350|ref|YP_003992224.1| DNA ligase, nad-dependent [Caldicellulosiruptor hydrothermalis 108]
 gi|311777369|gb|ADQ06855.1| DNA ligase, NAD-dependent [Caldicellulosiruptor hydrothermalis 108]
          Length = 673

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    + L +   ++  +   + E L S+    +K+A  +   F ++ +
Sbjct: 510 GIRHIGQKAAKTLAEHISSIDDLFTITEEQLLSLPDFGEKMAKSVVTFFRQDQT 563


>gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
 gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
          Length = 876

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIGP     LL ++G+++ +     +  A + G  KK++  +  +
Sbjct: 192 GVPGIGPKTATKLLIAYGSIENV----LDHAAEVSG--KKLSTSLIEY 233


>gi|260598336|ref|YP_003210907.1| Holliday junction DNA helicase RuvA [Cronobacter turicensis z3032]
 gi|260217513|emb|CBA31691.1| Holliday junction ATP-dependent DNA helicase ruvA [Cronobacter
           turicensis z3032]
          Length = 203

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++  +  L ++NG+GP     +L     Q F  V  + R  P  L  + GI KK A 
Sbjct: 65  NKQERTLFRELIKVNGVGPKLALAILSGMSAQQF--VNAVEREEPAALVKLPGIGKKTAE 122

Query: 602 KI 603
           ++
Sbjct: 123 RL 124


>gi|269837729|ref|YP_003319957.1| helix-hairpin-helix motif protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269786992|gb|ACZ39135.1| helix-hairpin-helix motif protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 196

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 14/54 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ + GIGP+  + ++        F        ++ + L ++ GIS ++   +
Sbjct: 143 ELESLPGIGPVLAQRIIAYRTTHGPF--------ATLDDLEAVRGISARMVESL 188


>gi|156933560|ref|YP_001437476.1| Holliday junction DNA helicase RuvA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166230549|sp|A7MEA2|RUVA_ENTS8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|156531814|gb|ABU76640.1| hypothetical protein ESA_01380 [Cronobacter sakazakii ATCC BAA-894]
          Length = 203

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++  +  L ++NG+GP     +L     Q F  V  + R  P  L  + GI KK A 
Sbjct: 65  NKQERTLFRELIKVNGVGPKLALAILSGMSAQQF--VNAVEREEPAALVKLPGIGKKTAE 122

Query: 602 KI 603
           ++
Sbjct: 123 RL 124


>gi|148825408|ref|YP_001290161.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittEE]
 gi|229846401|ref|ZP_04466509.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 7P49H1]
 gi|166230556|sp|A5UAH7|RUVA_HAEIE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|148715568|gb|ABQ97778.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittEE]
 gi|229810494|gb|EEP46212.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae 7P49H1]
          Length = 204

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSS 585
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     I R  
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYAIEREE 106

Query: 586 PETLASIEGISKKIACKIYNHFH 608
              L  I G+ KK A ++     
Sbjct: 107 LSKLTKIPGVGKKTAERLLVELK 129


>gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L]
 gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|16272267|ref|NP_438479.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae Rd
           KW20]
 gi|260581219|ref|ZP_05849038.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW]
 gi|1173330|sp|P44632|RUVA_HAEIN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|1573280|gb|AAC21976.1| Holliday junction DNA helicase (ruvA) [Haemophilus influenzae Rd
           KW20]
 gi|260092144|gb|EEW76088.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae RdAW]
          Length = 204

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSS 585
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     I R  
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYAIEREE 106

Query: 586 PETLASIEGISKKIACKIYNHFH 608
              L  I G+ KK A ++     
Sbjct: 107 LSKLTKIPGVGKKTAERLLVELK 129


>gi|309972527|gb|ADO95728.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus
           influenzae R2846]
          Length = 204

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSS 585
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     I R  
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYAIEREE 106

Query: 586 PETLASIEGISKKIACKIYNHFH 608
              L  I G+ KK A ++     
Sbjct: 107 LSKLTKIPGVGKKTAERLLVELK 129


>gi|145634688|ref|ZP_01790397.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittAA]
 gi|145638774|ref|ZP_01794383.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittII]
 gi|148827465|ref|YP_001292218.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae PittGG]
 gi|260582589|ref|ZP_05850379.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127]
 gi|166230557|sp|A5UGC9|RUVA_HAEIG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|145268233|gb|EDK08228.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittAA]
 gi|145272369|gb|EDK12277.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittII]
 gi|148718707|gb|ABQ99834.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittGG]
 gi|260094400|gb|EEW78298.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae NT127]
 gi|301169022|emb|CBW28619.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus
           influenzae 10810]
 gi|309750264|gb|ADO80248.1| Holliday junction resolvasome, DNA-binding subunit [Haemophilus
           influenzae R2866]
          Length = 204

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSS 585
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     I R  
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYAIEREE 106

Query: 586 PETLASIEGISKKIACKIYNHFH 608
              L  I G+ KK A ++     
Sbjct: 107 LSKLTKIPGVGKKTAERLLVELK 129


>gi|269941127|emb|CBI49513.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 200

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + R+        L    GI KK A +I
Sbjct: 68  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKRAIENENDTYLTKFPGIGKKTARQI 123


>gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
 gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
          Length = 875

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      L++ + +++ +     E + +I+G  KK+   ++ +
Sbjct: 193 GVPGIGEKTAFKLIKEYKSIETV----LENIENIKG--KKLKENLHEY 234


>gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4]
 gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4]
          Length = 956

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG    + LL  +G +  +       L ++  I  +    +  +
Sbjct: 197 GVPGIGKKTAKDLLNEYGNIDNM-------LKNVANIKGRAGKNLLEY 237


>gi|89098968|ref|ZP_01171848.1| DNA repair protein RadC [Bacillus sp. NRRL B-14911]
 gi|89086372|gb|EAR65493.1| DNA repair protein RadC [Bacillus sp. NRRL B-14911]
          Length = 223

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            LL  F  ++++  ++ + + SI+GI    A ++   
Sbjct: 48  RLLTHFEGLRLLKDATLDEMTSIKGIGMAKAIQVLAA 84


>gi|299743316|ref|XP_001835682.2| centromere binding protein B [Coprinopsis cinerea okayama7#130]
 gi|298405599|gb|EAU86253.2| centromere binding protein B [Coprinopsis cinerea okayama7#130]
          Length = 592

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 16/74 (21%)

Query: 541 AITTHRKRR-KKAAYSPLDEINGIGPLRKRLL--LQSFGTVKMISRSSPETLASIEGISK 597
           A T HR  R +K     LD +      ++  L  L           +  E +A + GI +
Sbjct: 244 AATYHRNTRMRKHTKKKLDSL----EKKRICLYHLDH-------QNARQEDIAEMFGIER 292

Query: 598 KIACKIYNHFHKNT 611
               KI    HKN 
Sbjct: 293 STVSKILK--HKNQ 304


>gi|222445921|ref|ZP_03608436.1| hypothetical protein METSMIALI_01569 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435486|gb|EEE42651.1| hypothetical protein METSMIALI_01569 [Methanobrevibacter smithii
           DSM 2375]
          Length = 641

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACKIYNHF 607
           L  I GIG      +L S G  +     +     E +A+I+GIS++ A +I +  
Sbjct: 8   LQNIKGIGDKISEKILNSVGGEENLQKIVENVDVEKIANIDGISQRKAIEIMDQL 62


>gi|145631439|ref|ZP_01787209.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
 gi|144982976|gb|EDJ90485.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae R3021]
          Length = 204

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 15/88 (17%)

Query: 528 YFIQRLRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----M 580
           +F+  +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     
Sbjct: 50  HFV--VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYA 101

Query: 581 ISRSSPETLASIEGISKKIACKIYNHFH 608
           I R     L  I G+ KK A ++     
Sbjct: 102 IEREELSKLTKIPGVGKKTAERLLVELK 129


>gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580]
          Length = 879

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F TV+ +   S + ++      KK+  K+   
Sbjct: 194 GVPGVGEKTAIKLLKQFHTVEELLS-SIDEVS-----GKKLKEKLEEF 235


>gi|50365239|ref|YP_053664.1| holliday junction DNA helicase ruvA [Mesoplasma florum L1]
 gi|50363795|gb|AAT75780.1| holliday junction DNA helicase ruvA [Mesoplasma florum L1]
          Length = 182

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 546 RKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIAC 601
           R R ++  +  L +I  +G      LL +F + +     I     E LA ++GI    A 
Sbjct: 61  RSRDERNLFKELVKIKTVGLKTSFYLLNNF-SFEEFIKMIEEYDIEKLAKLKGIGNYTAK 119

Query: 602 KIYNHFHKN 610
            I     K+
Sbjct: 120 LIIEELQKH 128


>gi|330830776|ref|YP_004393728.1| hypothetical protein B565_3076 [Aeromonas veronii B565]
 gi|328805912|gb|AEB51111.1| hypothetical protein B565_3076 [Aeromonas veronii B565]
          Length = 266

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           S +  + GIGP     LLQ +G +  +  +  + 
Sbjct: 188 SNIKGVPGIGPKTATQLLQQYGNLAAMLEACQQE 221


>gi|328957015|ref|YP_004374401.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium
           sp. 17-4]
 gi|328673339|gb|AEB29385.1| Holliday junction ATP-dependent DNA helicase RuvA [Carnobacterium
           sp. 17-4]
          Length = 210

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  Y  L  ++GIGP     +L      G V+ I       L    G+ KK A +I
Sbjct: 74  KQLYLKLLSVSGIGPKSGLAILANDNHQGLVQAIENEDAAYLTKFPGVGKKTASQI 129


>gi|253743772|gb|EET00079.1| Hypothetical protein GL50581_2678 [Giardia intestinalis ATCC 50581]
          Length = 195

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           G+   + R L + F T+K I  SS + +AS+   S++ A  +    
Sbjct: 145 GLSKPKIRSLCEHFKTLKDICTSSVKEIASLPEFSEETATILLRRL 190


>gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
 gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
 gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
          Length = 875

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      L++ + +++ +     E + +I+G  KK+   ++ +
Sbjct: 193 GVPGIGEKTAFKLIKEYKSIETV----LENIENIKG--KKLKENLHEY 234


>gi|148266148|ref|YP_001232854.1| DNA repair protein RadC [Geobacter uraniireducens Rf4]
 gi|189029395|sp|A5G913|Y4138_GEOUR RecName: Full=UPF0758 protein Gura_4138
 gi|146399648|gb|ABQ28281.1| DNA replication and repair protein RadC [Geobacter uraniireducens
           Rf4]
          Length = 228

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            S LD    IG    R +LQ FG ++ ++ ++   +  I+G     A  I    
Sbjct: 45  RSALD----IG----REMLQDFGGLRNLAHATASEICRIKGAGPAKAACIKAAL 90


>gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241]
 gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|315038079|ref|YP_004031647.1| competence protein ComEA [Lactobacillus amylovorus GRL 1112]
 gi|312276212|gb|ADQ58852.1| competence protein ComEA [Lactobacillus amylovorus GRL 1112]
          Length = 227

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++ GIG  +   ++      G+ K I     E L  + GI +K    + +  
Sbjct: 177 LQKLTGIGEKKAEQIIAYREQKGSFKKI-----EDLMQVSGIGEKTFASLKDQL 225


>gi|312794199|ref|YP_004027122.1| DNA repair protein radc [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181339|gb|ADQ41509.1| DNA repair protein RadC [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 232

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ +FG++  +  + P+ L  ++G+    A  I
Sbjct: 52  RLISTFGSISNVFEAHPKELQKVDGVGANSAILI 85


>gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
 gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
          Length = 876

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            + G+G      L++ + +++ +   + E ++      KK+   + +
Sbjct: 193 GVPGVGEKTAFKLIKQYKSIENVYE-NVEDIS-----GKKLKENLKD 233


>gi|294635834|ref|ZP_06714289.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685]
 gi|291090806|gb|EFE23367.1| holliday junction DNA helicase RuvA [Edwardsiella tarda ATCC 23685]
          Length = 195

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++A +  L ++NG+GP     +L     Q F  V  + R     L  + G+ KK A 
Sbjct: 58  NKQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREEVAALIKLPGVGKKTAE 115

Query: 602 KI 603
           ++
Sbjct: 116 RL 117


>gi|255102994|ref|ZP_05331971.1| hypothetical protein CdifQCD-6_19448 [Clostridium difficile
          QCD-63q42]
 gi|255313136|ref|ZP_05354719.1| hypothetical protein CdifQCD-7_02231 [Clostridium difficile
          QCD-76w55]
 gi|255519112|ref|ZP_05386788.1| hypothetical protein CdifQCD-_18529 [Clostridium difficile
          QCD-97b34]
 gi|255652303|ref|ZP_05399205.1| hypothetical protein CdifQCD_19141 [Clostridium difficile
          QCD-37x79]
          Length = 266

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 18/87 (20%)

Query: 12 VYQMLD-IAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI------NNIRFTVTC 64
          VY+ +D      LYVGK  ++  R  S++ +         +I +        N+ F    
Sbjct: 4  VYKYIDPATEECLYVGKTEDIYARHSSHLSNKEEDWCTKELILKYIELPRRYNMDFF--- 60

Query: 65 TEVEALLLEANMIKRLKPRFNILLRDD 91
                  E  +I  L P FN L + D
Sbjct: 61 --------EVYLINELNPIFNKLSKGD 79


>gi|90962964|gb|ABE02406.1| At1g12790 [Arabidopsis thaliana]
          Length = 250

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  I       L Q+ G+++ I+++S E + +   +S K A  +   F 
Sbjct: 190 SIPNINKHDANTLYQAIGSIEAIAKASKEDILANTDLSSKKADTLTRFFQ 239


>gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 877

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 230


>gi|18391434|ref|NP_563913.1| unknown protein [Arabidopsis thaliana]
 gi|332190808|gb|AEE28929.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 250

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            I  I       L Q+ G+++ I+++S E + +   +S K A  +   F 
Sbjct: 190 SIPNINKHDANTLYQAIGSIEAIAKASKEDILANTDLSSKKADTLTRFFQ 239


>gi|319947102|ref|ZP_08021336.1| DNA repair protein RadC [Streptococcus australis ATCC 700641]
 gi|319747150|gb|EFV99409.1| DNA repair protein RadC [Streptococcus australis ATCC 700641]
          Length = 227

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL S  ++K ++  S + L  + GI K  A ++    
Sbjct: 49  QDLLGSLKSLKELASMSLQELQEVPGIGKVKAIELLAAI 87


>gi|297171136|gb|ADI22147.1| DNA uptake protein and related DNA-binding proteins [uncultured
           myxobacterium HF0200_19H16]
          Length = 178

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 14/58 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L  + G+GP   + LL+       F        ++ E+L ++ GI  K   ++  H 
Sbjct: 112 ELQLLEGVGPSLAKALLKYRDDHGPF--------ATVESLLNVRGIGPKTLERLRPHL 161


>gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
 gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
          Length = 879

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F TV+ +   S + ++      KK+  K+   
Sbjct: 194 GVPGVGEKTAIKLLKQFHTVEELLS-SIDEVS-----GKKLKEKLEEF 235


>gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 875

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F G+V+ +     + ++      KK+  K+  
Sbjct: 191 GIPGVGEKTALKLLHEFGGSVESVLE-HADEIS-----GKKLKEKVLE 232


>gi|229086898|ref|ZP_04219057.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus Rock3-44]
 gi|228696408|gb|EEL49234.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus Rock3-44]
          Length = 198

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L++I GIGP +   +++     G  + +     E L  ++GI +K   KI +
Sbjct: 142 ASKEQLEKITGIGPRKAENIMKYREEHGPFRKM-----EDLLEVDGIGEKSLEKIKD 193


>gi|258511977|ref|YP_003185411.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478703|gb|ACV59022.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 301

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 13/51 (25%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKK-IAC 601
           L+ + G+GP R   +L          ++       E+L  ++GI +K +A 
Sbjct: 237 LETLPGVGPKRAAAILAY-------RQAHGPFRDLESLRHVKGIGEKTLAK 280


>gi|218288650|ref|ZP_03492927.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241307|gb|EED08482.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 314

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 13/51 (25%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKK-IAC 601
           L+ + G+GP R   +L          ++       E+L  ++GI +K +A 
Sbjct: 250 LETLPGVGPKRAAAILAY-------RQAHGPFRDLESLRHVKGIGEKTLAK 293


>gi|193222378|emb|CAL62495.2| Putative DNA polymerase X [Herminiimonas arsenicoxydans]
          Length = 576

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 545 HRKRRKKAAYSPLDEINGIGPLRKRLLL--QSFGTVKMI-SRSSPETLASIEGISKKIAC 601
           HR+    ++   L  + G+GP R + L   ++  T+  + S +    + ++ G   +   
Sbjct: 86  HREL--PSSIHELLNLPGLGPKRVKALYQERNIQTLDQLYSSACNGQIRNVPGFGIRTEQ 143

Query: 602 KIYNHFHKNTS 612
           +I        S
Sbjct: 144 RILEAIRAQQS 154


>gi|189219913|ref|YP_001941131.1| DNA polymerase IV fused to PHP phosphatase [Methylacidiphilum
           infernorum V4]
 gi|189186771|gb|ACD83956.1| DNA polymerase IV fused to PHP phosphatase [Methylacidiphilum
           infernorum V4]
          Length = 656

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 548 RRKKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACK 602
            +K+   S L+  EI G+GP R ++L +  G   +  + ++  E  +A + G   K    
Sbjct: 136 LKKEFPASLLEILEIPGVGPKRAKILYEELGIKDIDSLEKACKEHRIAVLAGFGPKSEEN 195

Query: 603 IY 604
           I 
Sbjct: 196 IL 197


>gi|134095542|ref|YP_001100617.1| putative DNA polymerase [Herminiimonas arsenicoxydans]
          Length = 528

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 545 HRKRRKKAAYSPLDEINGIGPLRKRLLL--QSFGTVKMI-SRSSPETLASIEGISKKIAC 601
           HR+    ++   L  + G+GP R + L   ++  T+  + S +    + ++ G   +   
Sbjct: 38  HREL--PSSIHELLNLPGLGPKRVKALYQERNIQTLDQLYSSACNGQIRNVPGFGIRTEQ 95

Query: 602 KIYNHFHKNTS 612
           +I        S
Sbjct: 96  RILEAIRAQQS 106


>gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
 gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     E +  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----ENIDQVSG--KKLKEKL 244


>gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245]
 gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245]
          Length = 943

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 13/43 (30%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMIS----------RSSPE 587
           D I G   IGP     LL  +GT+  I           R+S E
Sbjct: 215 DNIPGAKGIGPKTAAALLLKYGTLDNIYRNIGELTPKTRASLE 257


>gi|312135376|ref|YP_004002714.1| DNA ligase, nad-dependent [Caldicellulosiruptor owensensis OL]
 gi|311775427|gb|ADQ04914.1| DNA ligase, NAD-dependent [Caldicellulosiruptor owensensis OL]
          Length = 673

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    + L +   ++  +   + E L ++    +K+A  +   F +  +
Sbjct: 510 GIRHIGQKAAKTLAEHISSIDDLFTITEEQLLALPDFGEKMAKSVVTFFRQEQT 563


>gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
 gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
          Length = 932

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + LL  FG+++ +  +  + L 
Sbjct: 191 DNIPGLPGVGEKTAKKLLADFGSMENLL-AHTDQLK 225


>gi|221632653|ref|YP_002521874.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM
           5159]
 gi|254767395|sp|B9KYT2|RUVA_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|221156321|gb|ACM05448.1| Holliday junction DNA helicase RuvA [Thermomicrobium roseum DSM
           5159]
          Length = 191

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 11/60 (18%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKM-------ISRSSPETLASIEGISKKIACKIYNHFH 608
            L  ++G+GP     LL    ++         I     E LA   GI KK A +I     
Sbjct: 74  SLLAVSGVGPRGALNLL----SLAAPDRLTEWIRGERIEELARAPGIGKKTASRIVLELR 129


>gi|163782033|ref|ZP_02177032.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882565|gb|EDP76070.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 715

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
           +G    + L Q   ++  +     E L +IEGI   +A  I   F +  +
Sbjct: 549 VGLTTAKKLSQVIDSIWDLRDMPVEKLEAIEGIGDVVARSIKEFFSREEN 598


>gi|218530437|ref|YP_002421253.1| DNA repair protein RadC [Methylobacterium chloromethanicum CM4]
 gi|218522740|gb|ACK83325.1| DNA repair protein RadC [Methylobacterium chloromethanicum CM4]
          Length = 248

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + L+  FG+   +  + P  L  +EG+S  +A  + 
Sbjct: 72  KALIHRFGSFAEVVSAEPARLMEVEGVSAGVAADLK 107


>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
 gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
          Length = 940

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + LL  FGT++ +  
Sbjct: 188 DNIPGCPGVGEKTAQKLLAEFGTIENLLE 216


>gi|163851630|ref|YP_001639673.1| DNA repair protein RadC [Methylobacterium extorquens PA1]
 gi|163663235|gb|ABY30602.1| DNA repair protein RadC [Methylobacterium extorquens PA1]
          Length = 248

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + L+  FG+   +  + P  L  +EG+S  +A  + 
Sbjct: 72  KALIHRFGSFAEVVSAEPARLMEVEGVSAGVAADLK 107


>gi|61657364|emb|CAI44281.1| holliday junction DNA helicase [Thermotoga naphthophila RKU-10]
          Length = 191

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGT-------VKMISRSSPETLASIEGISKKIAC 601
           RKK  +  L +++ +GP     ++    +       V MI+    E L+ + GISKK A 
Sbjct: 70  RKKELFLSLTKVSRLGPKTALKII----SNEDAETLVTMIASQDVEGLSKLPGISKKTAE 125

Query: 602 KIYNHFHKN 610
           +I       
Sbjct: 126 RIVMELKDE 134


>gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
 gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
          Length = 988

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG    + LL  +G +  +       L ++  I  +    +  +
Sbjct: 225 GVPGIGKKTAKDLLNEYGNIDNM-------LKNVANIKGRAGKNLLEY 265


>gi|323490042|ref|ZP_08095263.1| ComEA family DNA-binding competence protein [Planococcus
           donghaensis MPA1U2]
 gi|323396338|gb|EGA89163.1| ComEA family DNA-binding competence protein [Planococcus
           donghaensis MPA1U2]
          Length = 208

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNH 606
           G +  I++++   L  + GI    A  I  +
Sbjct: 144 GGLININQATEAELMELPGIGPSKAAAILAY 174


>gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
 gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
          Length = 875

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F G+V+ +     + ++      KK+  K+  
Sbjct: 191 GIPGVGEKTALKLLHEFGGSVESVLE-HADEIS-----GKKLKEKVLE 232


>gi|312869009|ref|ZP_07729186.1| comEA protein [Lactobacillus oris PB013-T2-3]
 gi|311095435|gb|EFQ53702.1| comEA protein [Lactobacillus oris PB013-T2-3]
          Length = 211

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L +I GIG  +  L+L+       F         + + L  + G  +K   KI  
Sbjct: 156 ATKEQLCQITGIGDKKADLILEYRQQHGQFK--------TVDELMQVSGFGEKTVAKIKE 207


>gi|259503078|ref|ZP_05745980.1| PTS family cellobiose porter, IIA component [Lactobacillus antri
           DSM 16041]
 gi|259168944|gb|EEW53439.1| PTS family cellobiose porter, IIA component [Lactobacillus antri
           DSM 16041]
          Length = 209

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L +I GIG  +  L+L+       F         + + L  + G  +K   KI  
Sbjct: 154 ATKEQLCQITGIGDKKADLILEYRQQHGQFK--------TVDELMQVSGFGEKTVAKIKE 205


>gi|281412224|ref|YP_003346303.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila
           RKU-10]
 gi|281373327|gb|ADA66889.1| Holliday junction DNA helicase RuvA [Thermotoga naphthophila
           RKU-10]
          Length = 188

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFGT-------VKMISRSSPETLASIEGISKKIAC 601
           RKK  +  L +++ +GP     ++    +       V MI+    E L+ + GISKK A 
Sbjct: 67  RKKELFLSLTKVSRLGPKTALKII----SNEDAETLVTMIASQDVEGLSKLPGISKKTAE 122

Query: 602 KIYNHFHKN 610
           +I       
Sbjct: 123 RIVMELKDE 131


>gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032]
 gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032]
          Length = 879

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + G+G      LL+ F TV+ +     E +  + G  KK+  K+   
Sbjct: 194 GVPGVGEKTAIKLLKQFETVENL----LEHIDEVSG--KKLKEKLEEF 235


>gi|148642584|ref|YP_001273097.1| DNA mismatch repair ATPase, MutS [Methanobrevibacter smithii ATCC
           35061]
 gi|148551601|gb|ABQ86729.1| DNA mismatch repair ATPase, MutS [Methanobrevibacter smithii ATCC
           35061]
          Length = 650

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 549 RKKAA------YSPLDEINGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKK 598
           RKK           L  I GIG      +L S G  +     +     E +A+I+GIS++
Sbjct: 3   RKKGLVKMQGEKVTLQNIKGIGDKISEKILNSVGGEENLQKIVENVDVEKIANIDGISQR 62

Query: 599 IACKIYNHF 607
            A +I N  
Sbjct: 63  KAIEIMNQL 71


>gi|289663503|ref|ZP_06485084.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 328

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IG     +LL  FG++  +     + +
Sbjct: 202 DNIPGVTGIGAKSAAVLLAHFGSLNALLE-RIDEI 235


>gi|297569910|ref|YP_003691254.1| DNA repair protein RadC [Desulfurivibrio alkaliphilus AHT2]
 gi|296925825|gb|ADH86635.1| DNA repair protein RadC [Desulfurivibrio alkaliphilus AHT2]
          Length = 246

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 569 RLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIY 604
           R LL  F  ++  +  +S + L  ++G+  K A  I+
Sbjct: 53  RELLARFNNSLSRVLDASQQELEQVKGVGSKNAFAIH 89


>gi|255262970|ref|ZP_05342312.1| excinuclease ABC subunit C [Thalassiobium sp. R2A62]
 gi|255105305|gb|EET47979.1| excinuclease ABC subunit C [Thalassiobium sp. R2A62]
          Length = 107

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 20/83 (24%)

Query: 12  VYQMLDIAGRVLYVGK-----AYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTV---- 62
           VY+  D  GR LYVGK     A+++ KR                 I    +  +      
Sbjct: 31  VYRHNDFDGRCLYVGKGCGKRAWHVTKR----------DPAHKAWIETCKH-DYVEVIDD 79

Query: 63  TCTEVEALLLEANMIKRLKPRFN 85
             TE++A  LE  +++   PRFN
Sbjct: 80  CLTELQAFRLENQLLREEAPRFN 102


>gi|322417835|ref|YP_004197058.1| PHP domain-containing protein [Geobacter sp. M18]
 gi|320124222|gb|ADW11782.1| PHP domain protein [Geobacter sp. M18]
          Length = 576

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 550 KKAAYSPLDEINGIGP---LRKRLLLQSFGTV---KMISR---SSPETLASIEGISKKIA 600
            + ++  L EI G+G     R    LQ+ GT+   + + +   +    L S+  +  K A
Sbjct: 45  AQMSHKELLEIPGVGADLAARIEEYLQT-GTMAYYEQLKQEVPAGVFALLSVPDLGPKTA 103

Query: 601 CKIYNHFH 608
             IY    
Sbjct: 104 KAIYEALQ 111


>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
          Length = 940

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + LL  FGT++ +  
Sbjct: 188 DNIPGCPGVGEKTAQKLLAEFGTIENLLE 216


>gi|159901058|ref|YP_001547305.1| DNA protecting protein DprA [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894097|gb|ABX07177.1| DNA protecting protein DprA [Herpetosiphon aurantiacus ATCC 23779]
          Length = 369

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPET 588
            GIGP R + L++  G+      ++ + 
Sbjct: 14  PGIGPQRLQALIKHCGSAAAAWSATLDD 41


>gi|68248920|ref|YP_248032.1| Holliday junction DNA helicase RuvA [Haemophilus influenzae
           86-028NP]
 gi|81336669|sp|Q4QNM5|RUVA_HAEI8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|68057119|gb|AAX87372.1| holliday junction DNA helicase RuvA [Haemophilus influenzae
           86-028NP]
          Length = 204

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSS 585
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     I R  
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYAIEREE 106

Query: 586 PETLASIEGISKKIACKIYNHFH 608
              L  I G+ KK A ++     
Sbjct: 107 LSKLTKIPGVGKKTAERLLVELK 129


>gi|332970926|gb|EGK09901.1| NAD-dependent DNA ligase LigA [Kingella kingae ATCC 23330]
          Length = 785

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L  +FG +  +  +    LA +  I   +A  I ++F +
Sbjct: 547 GIRHVGESTAKQLANAFGDLATVRHAPEPILACLPDIGGVVAQSIAHYFRQ 597


>gi|312897986|ref|ZP_07757395.1| helicase, RecD/TraA family [Megasphaera micronuciformis F0359]
 gi|310620911|gb|EFQ04462.1| helicase, RecD/TraA family [Megasphaera micronuciformis F0359]
          Length = 720

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKK 598
           ++GIGP   + L+ +FG+    I  + PE L  +EGI  K
Sbjct: 92  VDGIGPALAKRLVNAFGSETMKIMMNEPERLKEVEGIGPK 131


>gi|257431064|ref|ZP_05607443.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433750|ref|ZP_05610108.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436665|ref|ZP_05612709.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257278267|gb|EEV08909.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281843|gb|EEV11980.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284016|gb|EEV14139.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M876]
          Length = 203

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + R+        L    GI KK A +I
Sbjct: 71  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKRAIENENDTYLTKFPGIGKKTARQI 126


>gi|229592301|ref|YP_002874420.1| Holliday junction DNA helicase RuvA [Pseudomonas fluorescens SBW25]
 gi|312962759|ref|ZP_07777247.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
 gi|259495652|sp|C3JYS8|RUVA_PSEFS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229364167|emb|CAY51821.1| holliday junction helicase subunit B [Pseudomonas fluorescens
           SBW25]
 gi|311282976|gb|EFQ61569.1| Holliday junction ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
          Length = 203

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET---LASIEGISKKIACKI 603
           +R +  +  L  +NG+GP     L+ S   V  + R+ S +    L  + G+ KK A ++
Sbjct: 66  KRDRDFFRELIRLNGVGPKLALALMSSLE-VDELVRAVSAQDTSALTKVPGVGKKTAERL 124

Query: 604 YNHFH 608
                
Sbjct: 125 LVELK 129


>gi|299822789|ref|ZP_07054675.1| DNA repair protein RadC [Listeria grayi DSM 20601]
 gi|299816318|gb|EFI83556.1| DNA repair protein RadC [Listeria grayi DSM 20601]
          Length = 226

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            ++  + ++  I   + E L SI GI    A KI
Sbjct: 49  KIILKYKSLGDIKDLTIEELRSINGIGLAKATKI 82


>gi|300361487|ref|ZP_07057664.1| competence protein ComEA [Lactobacillus gasseri JV-V03]
 gi|300354106|gb|EFJ69977.1| competence protein ComEA [Lactobacillus gasseri JV-V03]
          Length = 246

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++NG+G  +   ++      G  K I     E L  + GI +K   K+ +  
Sbjct: 196 LQKLNGVGQKKAEQIIAYRDQNGGFKQI-----EDLTKVTGIGEKTFEKLKDQL 244


>gi|269797853|ref|YP_003311753.1| helicase, RecD/TraA family [Veillonella parvula DSM 2008]
 gi|269094482|gb|ACZ24473.1| helicase, RecD/TraA family [Veillonella parvula DSM 2008]
          Length = 717

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G G      +L+ FG   ++++    PE +  + G+ K +  +++N  
Sbjct: 88  GIKGFGEKSVEKVLEYFGIRILEILREERPEEIKDVPGLRKSVKDELFNTL 138


>gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
 gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
          Length = 900

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I GI   G      LL+ FGTV+ +  ++ + L 
Sbjct: 217 DNIPGIPKVGEKTALKLLEQFGTVENLI-ANTDQLK 251


>gi|147920405|ref|YP_685820.1| DNA-directed DNA polymerase X [uncultured methanogenic archaeon
           RC-I]
 gi|110621216|emb|CAJ36494.1| DNA-directed DNA polymerase X [uncultured methanogenic archaeon
           RC-I]
          Length = 574

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 556 PLDEINGIGPLR---KRLLLQSFGT--VKMISRSSPETL---ASIEGISKKIACKIYNHF 607
            L +I G+GP        LL++  +  ++ + + +P  L     + GI +K A K++   
Sbjct: 53  RLRDIPGVGPSIGSVIEELLRTGRSGLLETLKKETPLELYEVIEVPGIGRKTALKVHRAL 112


>gi|261337766|ref|ZP_05965650.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM
           20093]
 gi|270277219|gb|EFA23073.1| holliday junction DNA helicase RuvA [Bifidobacterium gallicum DSM
           20093]
          Length = 212

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKM------ISRSSPETLASIEGISKKIACKI 603
            K  +  L +++GIGP     LL   GT+        I       LA   G+ KK A KI
Sbjct: 67  AKRMFLQLQKVSGIGPKVALSLL---GTLDAGQLAHAIYDGDATALAKAPGLGKKGAQKI 123


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMI 581
            + GIG    + L++ FG V+ +
Sbjct: 190 GVPGIGEKTAKALIEEFGDVENL 212


>gi|329123663|ref|ZP_08252223.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           aegyptius ATCC 11116]
 gi|327469862|gb|EGF15327.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           aegyptius ATCC 11116]
          Length = 204

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSS 585
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     I R  
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYAIEREE 106

Query: 586 PETLASIEGISKKIACKIYNHFH 608
              L  I G+ KK A ++     
Sbjct: 107 LSKLTKIPGVGKKTAERLLVELK 129


>gi|296166641|ref|ZP_06849068.1| DNA integrity scanning protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898013|gb|EFG77592.1| DNA integrity scanning protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 357

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L++SFGT++ +  +S   L S+EGI    A  +     +    T
Sbjct: 308 LVRSFGTLQGLLAASAGDLQSVEGIGAMWARHVREGLSQLAEST 351


>gi|282848836|ref|ZP_06258229.1| helicase, RecD/TraA family [Veillonella parvula ATCC 17745]
 gi|294791746|ref|ZP_06756894.1| helicase RecD/TraA [Veillonella sp. 6_1_27]
 gi|294793607|ref|ZP_06758744.1| helicase RecD/TraA [Veillonella sp. 3_1_44]
 gi|282581490|gb|EFB86880.1| helicase, RecD/TraA family [Veillonella parvula ATCC 17745]
 gi|294455177|gb|EFG23549.1| helicase RecD/TraA [Veillonella sp. 3_1_44]
 gi|294456976|gb|EFG25338.1| helicase RecD/TraA [Veillonella sp. 6_1_27]
          Length = 717

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G G      +L+ FG   ++++    PE +  + G+ K +  +++N  
Sbjct: 88  GIKGFGEKSVEKVLEYFGIRILEILREERPEEIKDVPGLRKSVKDELFNTL 138


>gi|226952864|ref|ZP_03823328.1| DNA repair protein [Acinetobacter sp. ATCC 27244]
 gi|226836375|gb|EEH68758.1| DNA repair protein [Acinetobacter sp. ATCC 27244]
          Length = 244

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGI-SKKIAC 601
           R+L+Q FG +  I  +S E L+   GI S K A 
Sbjct: 54  RILIQHFGGLNPIFDASLEDLSQFNGIASTKYAQ 87


>gi|49483886|ref|YP_041110.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425766|ref|ZP_05602190.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428426|ref|ZP_05604824.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|282904222|ref|ZP_06312110.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906048|ref|ZP_06313903.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908961|ref|ZP_06316779.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911278|ref|ZP_06319080.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914447|ref|ZP_06322233.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919416|ref|ZP_06327151.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924793|ref|ZP_06332459.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958402|ref|ZP_06375853.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503520|ref|ZP_06667367.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510539|ref|ZP_06669244.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M809]
 gi|293537082|ref|ZP_06671762.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428217|ref|ZP_06820849.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590815|ref|ZP_06949453.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus MN8]
 gi|56749557|sp|Q6GG62|RUVA_STAAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|49242015|emb|CAG40713.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271460|gb|EEV03606.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275267|gb|EEV06754.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|282313159|gb|EFB43555.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317226|gb|EFB47600.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321628|gb|EFB51953.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324973|gb|EFB55283.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327225|gb|EFB57520.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331340|gb|EFB60854.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595840|gb|EFC00804.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790551|gb|EFC29368.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919927|gb|EFD96995.1| holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095186|gb|EFE25451.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466430|gb|EFF08951.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128575|gb|EFG58209.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575701|gb|EFH94417.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312437891|gb|ADQ76962.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195545|gb|EFU25932.1| Holliday junction DNA helicase RuvA [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 200

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + R+        L    GI KK A +I
Sbjct: 68  KDMFLSLIKVTGIGPKSALAILAT-STPNEVKRAIENENDTYLTKFPGIGKKTARQI 123


>gi|127513417|ref|YP_001094614.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Shewanella loihica PV-4]
 gi|126638712|gb|ABO24355.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Shewanella loihica PV-4]
          Length = 99

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 12/52 (23%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACK 602
            L ++ GIG  +   +++          +     S E L  ++GI  K+  +
Sbjct: 48  ELTQLKGIGEAKASAIVEY-------RDAHGKFNSIEELTQVKGIGPKVIEQ 92


>gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
 gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
          Length = 932

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + LL  FG+++ +  +  + L 
Sbjct: 191 DNIPGLPGVGEKTAKKLLADFGSMENLL-AHTDQLK 225


>gi|256376383|ref|YP_003100043.1| 5'-3' exonuclease [Actinosynnema mirum DSM 43827]
 gi|255920686|gb|ACU36197.1| 5'-3' exonuclease [Actinosynnema mirum DSM 43827]
          Length = 349

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      L+  FG+++ +  +
Sbjct: 238 LPGVAGIGEKTAAKLITEFGSLEALLAA 265


>gi|240138796|ref|YP_002963269.1| DNA repair protein RadC [Methylobacterium extorquens AM1]
 gi|240008766|gb|ACS39992.1| DNA repair protein RadC [Methylobacterium extorquens AM1]
          Length = 248

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + L+  FG+   +  + P  L  +EG+S  +A  + 
Sbjct: 72  KALIHRFGSFAEVVSAEPARLMEVEGVSAGVAADLK 107


>gi|255102995|ref|ZP_05331972.1| hypothetical protein CdifQCD-6_19453 [Clostridium difficile
          QCD-63q42]
 gi|255313135|ref|ZP_05354718.1| hypothetical protein CdifQCD-7_02226 [Clostridium difficile
          QCD-76w55]
 gi|255519113|ref|ZP_05386789.1| hypothetical protein CdifQCD-_18534 [Clostridium difficile
          QCD-97b34]
 gi|255652302|ref|ZP_05399204.1| hypothetical protein CdifQCD_19136 [Clostridium difficile
          QCD-37x79]
          Length = 244

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 18/82 (21%)

Query: 12 VYQMLDIA-GRVLYVGKAYNLQKRIKSYMHSN-----NHTHRITHM-ISQINNIRFTVTC 64
          VY+ ++      LYVGK  N+  R  S++ +      N   R+ +M +     + F    
Sbjct: 4  VYKYINQDTEECLYVGKTENICDRHASHLSNKKENWCNKNLRLEYMELDNKYTMDFY--- 60

Query: 65 TEVEALLLEANMIKRLKPRFNI 86
                  E  +I +L+P+FNI
Sbjct: 61 --------EIYLINKLEPKFNI 74


>gi|323136604|ref|ZP_08071685.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
 gi|322397921|gb|EFY00442.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
          Length = 705

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR-SSPET--------LASIEGISKKIACKIYNHFHK 609
            I  +G    R L + FG  + +   +            + SI+G+   +A  +++ F +
Sbjct: 544 GIRHVGETNARRLARHFGDFESLRETAREADPGTEARARIDSIDGVGPVVAEALHDFFAE 603

Query: 610 NTSH 613
             + 
Sbjct: 604 PHNE 607


>gi|320333799|ref|YP_004170510.1| PHP domain-containing protein [Deinococcus maricopensis DSM 21211]
 gi|319755088|gb|ADV66845.1| PHP domain protein [Deinococcus maricopensis DSM 21211]
          Length = 562

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPE-TLASIEGISKKIACKIYN 605
           L  + G+GP + R L  +   +++ +  ++ +  LA+++G   K A K+  
Sbjct: 92  LLRVRGLGPKKVRALWDAGIDSLEALREAARDGRLAALKGFGAKTAVKLLE 142


>gi|257055858|ref|YP_003133690.1| non-ribosomal peptide synthase/amino acid adenylation enzyme
            [Saccharomonospora viridis DSM 43017]
 gi|256585730|gb|ACU96863.1| non-ribosomal peptide synthase/amino acid adenylation enzyme
            [Saccharomonospora viridis DSM 43017]
          Length = 5750

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 500  GPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTH 545
            G +     E     + +   L     I + + R+ DE +RFAI+ H
Sbjct: 2629 GAEAGELAELLHRHRWDPFDLTDPPAIRFLLARVADEEYRFAISHH 2674


>gi|47079403|gb|AAT10146.1| ATP-dependent RNA helicase [uncultured marine group II
           euryarchaeote DeepAnt-JyKC7]
          Length = 878

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L+  FGT+  +  +  + + S+ GIS+    +++  F 
Sbjct: 833 RLMDQFGTIAGLVWADEDEIRSVSGISETQVRELWRTFR 871


>gi|313893706|ref|ZP_07827273.1| helicase, RecD/TraA family [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441720|gb|EFR60145.1| helicase, RecD/TraA family [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 717

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I G G      +L  FG   ++++    PE +  + G+ K +  +++N  
Sbjct: 88  GIKGFGEKSVEKVLDYFGIRILEILREERPEEIKDVPGLRKSVKDELFNTL 138


>gi|239907632|ref|YP_002954373.1| hypothetical protein DMR_29960 [Desulfovibrio magneticus RS-1]
 gi|239797498|dbj|BAH76487.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 237

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 11  GVYQMLDIAGRVLYVGKAY 29
           GVY   D  G+++YVGK  
Sbjct: 102 GVYTFYDSYGKLIYVGKTK 120


>gi|113475951|ref|YP_722012.1| NAD-dependent DNA ligase LigA [Trichodesmium erythraeum IMS101]
 gi|123160812|sp|Q112N5|DNLJ_TRIEI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|110166999|gb|ABG51539.1| DNA ligase, NAD-dependent [Trichodesmium erythraeum IMS101]
          Length = 774

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +ING+G    + L+ S    +V  +   + E L S+E + KK A K+   
Sbjct: 500 DINGLGEKLVQQLVNSGLVKSVADLYNLTMEDLTSLERMGKKSANKLIEA 549


>gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
 gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
          Length = 952

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 220


>gi|254561399|ref|YP_003068494.1| DNA repair protein RadC [Methylobacterium extorquens DM4]
 gi|254268677|emb|CAX24636.1| DNA repair protein RadC [Methylobacterium extorquens DM4]
          Length = 248

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + L+  FG+   +  + P  L  +EG+S  +A  + 
Sbjct: 72  KALIHRFGSFAEVVSAEPARLMEVEGVSAGVAADLK 107


>gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 886

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            + GIG      LL  +G+V+ +  +  + L 
Sbjct: 191 GVPGIGEKTALKLLHQYGSVEEVL-AHTDELK 221


>gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
 gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
          Length = 931

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IGP     L+  +G++  I  
Sbjct: 200 DNIPGAPGIGPKTAANLINRYGSIAKIYE 228


>gi|148243841|ref|YP_001220080.1| DNA recombination protein RuvA [Acidiphilium cryptum JF-5]
 gi|146400404|gb|ABQ28938.1| Holliday junction DNA helicase subunit RuvA [Acidiphilium cryptum
           JF-5]
          Length = 206

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            L  + G+GP     LL         + I  +  + L +++GI    A ++ +    + +
Sbjct: 74  KLVGVQGVGPATALNLLSQLAPEELWRAIREADQKALTAVKGIGPAAAKRLISELESHAA 133


>gi|119872000|ref|YP_930007.1| Rad51-like protein [Pyrobaculum islandicum DSM 4184]
 gi|119673408|gb|ABL87664.1| Rad51-like protein [Pyrobaculum islandicum DSM 4184]
          Length = 311

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 549 RKKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           RKKA  S L+   G+GP     L++  G  +++ +S  + E LA   GI  + A K+  
Sbjct: 3   RKKADLSSLE---GVGPKTFEKLME-LGITSLEHLSEFTAEELAEA-GIEYERAVKLLQ 56


>gi|71064694|ref|YP_263421.1| putative competence DNA binding protein ComEA [Psychrobacter
           arcticus 273-4]
 gi|71037679|gb|AAZ17987.1| putative competence DNA binding protein ComEA [Psychrobacter
           arcticus 273-4]
          Length = 115

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACK 602
           +A    L  ++GIG  + + ++     FG  K     + + L  ++GI  K   K
Sbjct: 57  RATEGELTLLHGIGSSKAQAIILYREMFGRFK-----TVDELTKVKGIGAKTVEK 106


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
          Length = 935

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 193 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 221


>gi|322411466|gb|EFY02374.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 652

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 30/54 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L++ G ++ +     E +A+I+G+   IA  +  +F ++++
Sbjct: 502 GIRHIGAKASRLILETCGNIEHLLTVREEDIATIDGLGMVIAKSLVQYFQQDSA 555


>gi|302872877|ref|YP_003841513.1| helicase, RecD/TraA family [Caldicellulosiruptor obsidiansis OB47]
 gi|302575736|gb|ADL43527.1| helicase, RecD/TraA family [Caldicellulosiruptor obsidiansis OB47]
          Length = 741

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I GIG    + ++ +FG     + +  PE L SI G++ +   +I N F
Sbjct: 89  IKGIGQKTAKKIVDTFGDDTARVLQEEPEKLLSIRGMTPEKVERIRNMF 137


>gi|253989949|ref|YP_003041305.1| Holliday junction DNA helicase RuvA [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639070|emb|CAR67683.1| holliday junction atp-dependent dna helicase ruva (ec 3.6.1.-)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781399|emb|CAQ84562.1| holliday junction ATP-dependent DNA helicase RuvA [Photorhabdus
           asymbiotica]
          Length = 205

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  I + +  +L  + G+ KK A +
Sbjct: 66  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VSAIEQEAIASLVKLPGVGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|119947072|ref|YP_944752.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Psychromonas ingrahamii 37]
 gi|119865676|gb|ABM05153.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Psychromonas ingrahamii 37]
          Length = 104

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIG  + + ++        F        +    L  + GI      KI  
Sbjct: 49  ATSQQLTIVKGIGEKKAQAIIDYRTMNGDF--------ADLNELVKVRGIGDATLKKIQP 100

Query: 606 HF 607
            F
Sbjct: 101 FF 102


>gi|311251484|ref|XP_003124634.1| PREDICTED: DNA repair endonuclease XPF-like [Sus scrofa]
          Length = 917

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L ++ G+     R L+     +  ++  S + LA + G +   A ++Y   H
Sbjct: 853 LLKMPGVNAKNCRSLMNHVTNIAELASLSQDKLAGLLG-NAASARQLYEFLH 903


>gi|297695020|ref|XP_002824758.1| PREDICTED: Fanconi anemia group M protein-like [Pongo abelii]
          Length = 1967

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 559  EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             I  I  +    +   F +VK ++ SS + ++    ++ + A +IY + H
Sbjct: 1897 SIPNISYVTALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIH 1946


>gi|297567838|ref|YP_003686809.1| hypothetical protein Mesil_3498 [Meiothermus silvanus DSM 9946]
 gi|296852287|gb|ADH65301.1| hypothetical protein Mesil_3498 [Meiothermus silvanus DSM 9946]
          Length = 101

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKI 603
           A  + L+ + GIGP   + +++   +   + +        + ++GI   +  KI
Sbjct: 48  ATLAQLETLPGIGPKLAQEIIKHRPYKNGQELQ-------SKVKGIGPAVWKKI 94


>gi|259483093|tpe|CBF78182.1| TPA: single-stranded DNA endonuclease (Eurofung) [Aspergillus
           nidulans FGSC A4]
          Length = 985

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           L  + G+ P     L+   G +  I+  S E L     + ++ A ++   F K+
Sbjct: 929 LRAVPGVSPQVLERLILETGNISEIANMSVEELD--PFMGREAARQVVGFFRKS 980


>gi|296128451|ref|YP_003635701.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
 gi|296020266|gb|ADG73502.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
          Length = 326

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      LL  +GT++ +  +
Sbjct: 216 LPGVPGIGEKTAASLLARYGTLEGVLAA 243


>gi|160872061|ref|ZP_02062193.1| protein smf (DNA-processing chain A) [Rickettsiella grylli]
 gi|159120860|gb|EDP46198.1| protein smf (DNA-processing chain A) [Rickettsiella grylli]
          Length = 384

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           I   G     LLL+ F T K I  +S + L    GI   +A  + N
Sbjct: 17  IPQCGIHTALLLLKKFKTPKEILSASYDELIQA-GIRPTLASHLKN 61


>gi|309773941|ref|NP_075430.2| COX1-i1 protein [Yarrowia lipolytica]
 gi|12718799|emb|CAC28097.2| COX1-i1 protein [Yarrowia lipolytica]
          Length = 399

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMIS 53
           G+Y    I G+  YVG + NL  RI SY   +    +   ++S
Sbjct: 142 GIYIWESIDGKNKYVGHSINLYNRISSYYMPSILKTKARKVLS 184


>gi|67903452|ref|XP_681982.1| hypothetical protein AN8713.2 [Aspergillus nidulans FGSC A4]
 gi|40741072|gb|EAA60262.1| hypothetical protein AN8713.2 [Aspergillus nidulans FGSC A4]
          Length = 942

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           L  + G+ P     L+   G +  I+  S E L     + ++ A ++   F K+
Sbjct: 886 LRAVPGVSPQVLERLILETGNISEIANMSVEELD--PFMGREAARQVVGFFRKS 937


>gi|294791902|ref|ZP_06757050.1| competence protein [Veillonella sp. 6_1_27]
 gi|294457132|gb|EFG25494.1| competence protein [Veillonella sp. 6_1_27]
          Length = 189

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    LD + GIGP   + + +       F ++K I          ++GI   +  KI +
Sbjct: 134 ATAKELDSLPGIGPAMAKRIEEYRSQKGPFTSIKGIKG--------VKGIGDGVFKKIKD 185


>gi|293571803|ref|ZP_06682819.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608057|gb|EFF37363.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 562

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGIYE 222


>gi|197301859|ref|ZP_03166928.1| hypothetical protein RUMLAC_00585 [Ruminococcus lactaris ATCC
           29176]
 gi|197299089|gb|EDY33620.1| hypothetical protein RUMLAC_00585 [Ruminococcus lactaris ATCC
           29176]
          Length = 225

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +  E L ++ GI +  A KI  +
Sbjct: 166 NINTAGKEELMTLPGIGEAKAEKILRY 192


>gi|121606769|ref|YP_984098.1| DNA protecting protein DprA [Polaromonas naphthalenivorans CJ2]
 gi|120595738|gb|ABM39177.1| DNA protecting protein DprA [Polaromonas naphthalenivorans CJ2]
          Length = 399

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
            G+G    R LL +FG+ + I   S  TL  +   S K+A    +      S   T
Sbjct: 32  PGVGNTTARKLLAAFGSAQAIFEQSSATLQKLG--SDKLA----SALRSEPSSLAT 81


>gi|310821136|ref|YP_003953494.1| exodeoxyribonuclease v alpha chain [Stigmatella aurantiaca DW4/3-1]
 gi|309394208|gb|ADO71667.1| Exodeoxyribonuclease V alpha chain [Stigmatella aurantiaca DW4/3-1]
          Length = 759

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598
           K   S L  + G+GP   R L++ FG  T+  I  S PE LA ++G  +K
Sbjct: 118 KYLGSGL--VKGVGPAMARRLVEHFGLETLD-IIDSKPERLAEVKGFGEK 164


>gi|291541560|emb|CBL14670.1| Uncharacterized protein conserved in bacteria [Ruminococcus
          bromii L2-63]
          Length = 363

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 9/73 (12%)

Query: 12 VYQMLDI-AGRVLYVGKAYNLQKRIKSY---MHSNNHTHRITHMISQINNIRFTVTC--- 64
          VY + D    ++ Y+GK  N   RI  +   + ++N ++RI  ++S  N I+  +     
Sbjct: 16 VYALADSRDNKIFYIGKGIN--NRIFQHEEKLDNSNKSNRIKEILSSGNKIKKLIISYGL 73

Query: 65 TEVEALLLEANMI 77
          +E EA + E+ +I
Sbjct: 74 SEKEAFVAESALI 86


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 199 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 227


>gi|162146622|ref|YP_001601081.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543386|ref|YP_002275615.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189045754|sp|A9HAV7|RUVA_GLUDA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|161785197|emb|CAP54743.1| putative holliday junction ATP-dependent DNA helicase ruvA
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531063|gb|ACI51000.1| Holliday junction DNA helicase RuvA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 200

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 557 LDEINGIGPLRKRLLLQSF--GTVKM-ISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L  + G+G      +L +   G +   I+ +   +L  + G+  ++A +I          
Sbjct: 75  LTTVQGVGAKVALAILSALSPGDLAGVIAAADKASLTRVSGVGARLAERILTELRDKAGR 134

Query: 614 TP 615
            P
Sbjct: 135 MP 136


>gi|116620084|ref|YP_822240.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255537|sp|Q02AG7|RUVA_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|116223246|gb|ABJ81955.1| Holliday junction DNA helicase RuvA [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 197

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKM------ISRSSPETLASIEGISKKIACK 602
           KA +  L  ++GIGP     +L     +        I R   E L  + G+ KK A +
Sbjct: 69  KALFEKLISVSGIGPTLAVKILS---GLAAADLILSIRRGEVEKLVKVPGVGKKTAER 123


>gi|115375432|ref|ZP_01462693.1| helicase, RecD/TraA family [Stigmatella aurantiaca DW4/3-1]
 gi|115367559|gb|EAU66533.1| helicase, RecD/TraA family [Stigmatella aurantiaca DW4/3-1]
          Length = 700

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKK 598
           K   S L  + G+GP   R L++ FG  T+  I  S PE LA ++G  +K
Sbjct: 59  KYLGSGL--VKGVGPAMARRLVEHFGLETLD-IIDSKPERLAEVKGFGEK 105


>gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 199 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 227


>gi|42523053|ref|NP_968433.1| transcription elongation factor NusA [Bdellovibrio bacteriovorus
           HD100]
 gi|39575258|emb|CAE79426.1| N utilization substance protein A [Bdellovibrio bacteriovorus
           HD100]
          Length = 462

 Score = 38.5 bits (88), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 550 KKAAYSP--LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEG 594
            + A S   L  I G+     + + QS FG+ + ++ ++ E L +I G
Sbjct: 351 SRTAESIFNLMLIPGMSETMAQNIFQSGFGSFQAVATAAVEELMTIPG 398


>gi|326792098|ref|YP_004309919.1| helicase, RecD/TraA family [Clostridium lentocellum DSM 5427]
 gi|326542862|gb|ADZ84721.1| helicase, RecD/TraA family [Clostridium lentocellum DSM 5427]
          Length = 714

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNH 606
           K   S L  I GIGP+  + ++  F   T+ +I    P+ +  + GI KK    I   
Sbjct: 83  KYLGSGL--IKGIGPVYAKKIVNLFKEQTLDIIEE-EPDRIIEVPGIGKKRVEMIKKA 137


>gi|294635105|ref|ZP_06713616.1| exodeoxyribonuclease IX [Edwardsiella tarda ATCC 23685]
 gi|291091482|gb|EFE24043.1| exodeoxyribonuclease IX [Edwardsiella tarda ATCC 23685]
          Length = 254

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISR 583
           S +  + GIG      LL  FG+++ I +
Sbjct: 177 SKIPGVAGIGAKTAAALLAEFGSLEAIYQ 205


>gi|289550593|ref|YP_003471497.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180125|gb|ADC87370.1| Holliday junction DNA helicase RuvA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 202

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           L ++ GIGP     +L +  T   + R+  +     L    GI KK A +I
Sbjct: 74  LIKVTGIGPKSALAILAT-STPNEVKRAIEDENDAYLTKFPGIGKKTARQI 123


>gi|242373942|ref|ZP_04819516.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
 gi|242348296|gb|EES39898.1| crossover junction endodeoxyribonuclease [Staphylococcus
           epidermidis M23864:W1]
          Length = 200

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + ++        L    GI KK A +I
Sbjct: 68  KDMFLSLIKVTGIGPKSALAILAA-STPNEVKQAIENENDAYLTQFPGIGKKTARQI 123


>gi|261367066|ref|ZP_05979949.1| helicase, RecD/TraA family [Subdoligranulum variabile DSM 15176]
 gi|282571185|gb|EFB76720.1| helicase, RecD/TraA family [Subdoligranulum variabile DSM 15176]
          Length = 743

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 563 IGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           IGP   + ++++FG  V  +   +P+ L  I+GI+ + A  I N F +
Sbjct: 98  IGPATAKKIIKAFGEDVLTVISETPQRLCEIKGITPEKAAAISNEFRR 145


>gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans]
          Length = 903

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISR-SSPETLASIEG 594
           L  + G+G      LL+ +G+++ +   +S   +A   G
Sbjct: 189 LPGVPGVGEKTALKLLRQYGSLESVLEHAS--EIAGKLG 225


>gi|12240026|gb|AAG49545.1|AF261103_1 NusA protein [Myxococcus xanthus DK 1622]
          Length = 254

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 560 INGIGPLRKRLL-LQSFGTVKMISRSSPETLAS---IEGISKKIACKIYNH 606
           + G+G      L L  + +V+ I  ++ + LA    + G+  K A ++ + 
Sbjct: 170 VRGVGEKTIEQLILAGYRSVEDI--ANEKDLAKLGDVPGVGIKKARQLKSA 218


>gi|305662518|ref|YP_003858806.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
 gi|304377087|gb|ADM26926.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
          Length = 354

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 10/52 (19%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG--ISKKIACKIYNHF 607
           D + GIGP     L++++G+++ I       + S  G  IS+ +  KI N+F
Sbjct: 244 DGVEGIGPKTAYQLIKAYGSLEKI-------IKSPHGSHISEDLI-KIKNYF 287


>gi|302671947|ref|YP_003831907.1| exodeoxyribonuclease V alpha subunit RecD [Butyrivibrio
           proteoclasticus B316]
 gi|302396420|gb|ADL35325.1| exodeoxyribonuclease V alpha subunit RecD [Butyrivibrio
           proteoclasticus B316]
          Length = 759

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ FG  T ++I    PE LA I+GIS+K A  I
Sbjct: 95  IKGIGEALAARIVKKFGDDTFRIIED-EPERLAEIKGISEKKAIDI 139


>gi|323358019|ref|YP_004224415.1| nuclease subunit of the excinuclease complex [Microbacterium
          testaceum StLB037]
 gi|323274390|dbj|BAJ74535.1| nuclease subunit of the excinuclease complex [Microbacterium
          testaceum StLB037]
          Length = 236

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 3  SEQMPECPGVYQMLDIAGRVLYVGKA 28
          +E  P  PGVYQM      ++YVG A
Sbjct: 28 AEGAPMSPGVYQMRLRDDLIVYVGMA 53


>gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
 gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
          Length = 881

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGIYE 222


>gi|307594203|ref|YP_003900520.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
           14429]
 gi|307549404|gb|ADN49469.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
           14429]
          Length = 349

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISR 583
           D + GIGP R   L+Q FG ++ + +
Sbjct: 245 DGVPGIGPQRALRLIQEFGGLEKLLQ 270


>gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679]
 gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679]
          Length = 881

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGIYE 222


>gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039]
 gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039]
          Length = 881

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGIYE 222


>gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15]
 gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15]
          Length = 881

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGIYE 222


>gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501]
 gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501]
          Length = 881

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGIYE 222


>gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317]
 gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317]
          Length = 881

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGIYE 222


>gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68]
 gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
 gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68]
 gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
          Length = 881

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGIYE 222


>gi|253689653|ref|YP_003018843.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756231|gb|ACT14307.1| DNA-directed DNA polymerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 352

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKRL-------------------LLQSFGTVKMI----------SRSSP 586
           PL++I G+G +  +                    LL+ FG    +           R SP
Sbjct: 177 PLEKIPGVGKVTAKRLEERGLHTCADVRVYALADLLKEFGKFGRVLWERCQGIDERRISP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           + L    G+ K +A  I++ 
Sbjct: 237 DRLRKSVGVEKTLAQDIHSW 256


>gi|240172172|ref|ZP_04750831.1| DNA integrity scanning protein DisA [Mycobacterium kansasii ATCC
           12478]
          Length = 358

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L++SFGT++ +  +S   L S++GI    A  +     +    T
Sbjct: 311 LVRSFGTLQGLLAASAGDLQSVDGIGAMWARHVREGLSQLAEST 354


>gi|237748980|ref|ZP_04579460.1| RuvA protein [Oxalobacter formigenes OXCC13]
 gi|229380342|gb|EEO30433.1| RuvA protein [Oxalobacter formigenes OXCC13]
          Length = 193

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 533 LRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS----SPE 587
           +R++AH   +       ++A +  L  I+G+G      LL   G +V  +S++       
Sbjct: 53  IREDAH--VLYGFGSLDERALFRQLIRISGVGARTALALLS--GLSVNDMSQAVALQDAS 108

Query: 588 TLASIEGISKKIACK 602
            L SI GI KK A +
Sbjct: 109 RLTSIPGIGKKTAER 123


>gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
 gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
          Length = 881

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGIYE 222


>gi|209972979|ref|YP_002300426.1| gp32.85 [Bacillus phage SPO1]
 gi|209871299|gb|ACI91055.1| gp32.85 [Bacillus phage SPO1]
          Length = 314

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 8/50 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSS---PETLASIEGISKKIACKIYN 605
            + GIG    + L++ +G +  I +S+    + L      SK+ A +I+ 
Sbjct: 196 GVPGIGEKTAQNLMKKYGHIDNILQSTGSVRKELMK----SKRNA-RIFE 240


>gi|209542393|ref|YP_002274622.1| DNA repair protein RadC [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530070|gb|ACI50007.1| DNA repair protein RadC [Gluconacetobacter diazotrophicus PAl 5]
          Length = 244

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 19/75 (25%)

Query: 543 TTHRKR-RKKAAYS---PLDE---IN-----GIGPLR-----KRLLLQSFGTVKMISRSS 585
           T HR R R +   S    L +   I      G+ P R      + LL  FG++  +  + 
Sbjct: 24  TGHRARMRARVLASGAGSLADYEIIEMLLFSGV-PRRDTKPMAKALLNRFGSLGALLSAP 82

Query: 586 PETLASIEGISKKIA 600
            + L +  G+S ++A
Sbjct: 83  ADALRAA-GLSDRVA 96


>gi|162147771|ref|YP_001602232.1| DNA repair protein radC [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786348|emb|CAP55930.1| putative DNA repair protein radC [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 244

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 19/75 (25%)

Query: 543 TTHRKR-RKKAAYS---PLDE---IN-----GIGPLR-----KRLLLQSFGTVKMISRSS 585
           T HR R R +   S    L +   I      G+ P R      + LL  FG++  +  + 
Sbjct: 24  TGHRARMRARVLASGAGSLADYEIIEMLLFSGV-PRRDTKPMAKALLNRFGSLGALLSAP 82

Query: 586 PETLASIEGISKKIA 600
            + L +  G+S ++A
Sbjct: 83  ADALRAA-GLSDRVA 96


>gi|157693178|ref|YP_001487640.1| Holliday junction DNA helicase RuvA [Bacillus pumilus SAFR-032]
 gi|167012657|sp|A8FFR3|RUVA_BACP2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|157681936|gb|ABV63080.1| crossover junction endoribonuclease subunit A [Bacillus pumilus
           SAFR-032]
          Length = 201

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 540 FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGI 595
           F++   + R +KA ++ L  + GIGP     +L S G     +  I R     L    G+
Sbjct: 55  FSLYGFQTREEKALFTKLLNVTGIGPKGALAILAS-GDPGAVISAIEREDEAFLIKFPGV 113

Query: 596 SKKIACKI 603
            KK A +I
Sbjct: 114 GKKTARQI 121


>gi|16082126|ref|NP_394563.1| DNA repair and recombination protein RadA [Thermoplasma acidophilum
           DSM 1728]
 gi|13878691|sp|Q9HJ68|RADA_THEAC RecName: Full=DNA repair and recombination protein radA
 gi|10640417|emb|CAC12231.1| probable DNA repair protein Rad51 (RadA) [Thermoplasma acidophilum]
          Length = 323

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISK 597
            R KK      +++ G+G      L ++ +  +  I+ +SP+ L+ + GI +
Sbjct: 8   NREKKTI----EDLPGVGEATAEKLRENGYDDIMAIAVASPKDLSDVTGIGE 55


>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1]
 gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1]
          Length = 911

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMI 581
           D I G   IGP     L+  FG+++ +
Sbjct: 185 DNIPGVGGIGPKTAAQLIAEFGSLEGV 211


>gi|302865766|ref|YP_003834403.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
 gi|302568625|gb|ADL44827.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
          Length = 717

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L + F +V  I  +  E L+S++G+   IA  +   F
Sbjct: 552 SIRHVGPTAAQALARHFRSVAAIEAAGEEELSSVDGVGPTIAASVKEWF 600


>gi|222053813|ref|YP_002536175.1| excinuclease ABC subunit C [Geobacter sp. FRC-32]
 gi|221563102|gb|ACM19074.1| Excinuclease ABC C subunit domain protein [Geobacter sp. FRC-32]
          Length = 240

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 11 GVYQMLDIAGRVLYVGKAY-NLQKRIKSYMHSNNHTH 46
          GVY   D  G  +YVG+    L+ RI+ ++ +     
Sbjct: 53 GVYAFYDYDGEPIYVGQTNEQLRTRIRRHLTNQRTDA 89


>gi|24373120|ref|NP_717163.1| exonuclease IX [Shewanella oneidensis MR-1]
 gi|24347316|gb|AAN54607.1|AE015601_1 exodeoxyribonuclease IX [Shewanella oneidensis MR-1]
          Length = 236

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            I GIGP     LL++F T+     ++    +S+  +  K A K+
Sbjct: 157 GIPGIGPKSAAELLRTFRTL-----ATL--FSSLPNLGAKQAKKL 194


>gi|15639532|ref|NP_218982.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025771|ref|YP_001933543.1| Holliday junction DNA helicase, subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|6094206|sp|O83554|RUVA_TREPA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560146|sp|B2S3D5|RUVA_TREPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3322833|gb|AAC65527.1| Holliday junction DNA helicase (ruvA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018346|gb|ACD70964.1| Holliday junction DNA helicase, subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291059920|gb|ADD72655.1| Holliday junction DNA helicase RuvA [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 227

 Score = 38.5 bits (88), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 15/79 (18%)

Query: 544 THR--KRR--------KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETL 589
            HR    R        ++  +  L ++ GIGP +   +L S  + + +  +        L
Sbjct: 52  YHREDALRLFGFSNVQERTLFLSLTKVEGIGPKQALKVLSSISS-QALCAALDTGDLCAL 110

Query: 590 ASIEGISKKIACKIYNHFH 608
             I GI KK A ++     
Sbjct: 111 QRIPGIGKKTAQRMLLALK 129


>gi|291295411|ref|YP_003506809.1| helix-hairpin-helix motif protein [Meiothermus ruber DSM 1279]
 gi|290470370|gb|ADD27789.1| helix-hairpin-helix motif protein [Meiothermus ruber DSM 1279]
          Length = 103

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETL-ASIEGISKKIACKI 603
           A  + L+ + GIGP   + +++     +    +    L + ++GIS  +  KI
Sbjct: 50  ATLAQLETLPGIGPKLAQEIIKH----RPYKNA--HDLQSKVKGISPSLWKKI 96


>gi|315502322|ref|YP_004081209.1| DNA ligase, nad-dependent [Micromonospora sp. L5]
 gi|315408941|gb|ADU07058.1| DNA ligase, NAD-dependent [Micromonospora sp. L5]
          Length = 717

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +GP   + L + F +V  I  +  E L+S++G+   IA  +   F
Sbjct: 552 SIRHVGPTAAQALARHFRSVAAIEAAGEEELSSVDGVGPTIAASVKEWF 600


>gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO]
          Length = 838

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 194 DNIPGVTKIGEKTAIKLLKQYGSVEGIYE 222


>gi|255024155|ref|ZP_05296141.1| DNA polymerase I [Listeria monocytogenes FSL J1-208]
          Length = 280

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F GTV+ +     E ++      KK+  K+  
Sbjct: 191 GIPGVGEKTALKLLHEFGGTVESVLE-HAEEIS-----GKKLKEKVVE 232


>gi|229163276|ref|ZP_04291230.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus R309803]
 gi|228620183|gb|EEK77055.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus R309803]
          Length = 199

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L++I GIG  +   +L+     G  + I     E L  I+GI  K   KI +
Sbjct: 143 ATKEQLEKITGIGSRKAESILKYREEHGPFQKI-----EDLLEIDGIGAKSLEKIKD 194


>gi|188997236|ref|YP_001931487.1| PHP domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932303|gb|ACD66933.1| PHP domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 582

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 8/57 (14%)

Query: 559 EINGIGPLRKRLLLQSFGT-----VKMISRSSPE---TLASIEGISKKIACKIYNHF 607
           +I GIG      +L+   T      + + +  PE    L  + G   K   +IY   
Sbjct: 57  DIRGIGSHTFDKILEYIKTGKIQKYEELKKLIPEDFLELMEVPGFGPKTLKRIYEEL 113


>gi|21226527|ref|NP_632449.1| ski2-like helicase [Methanosarcina mazei Go1]
 gi|24418450|sp|Q8PZR7|HELS_METMA RecName: Full=Putative ski2-type helicase
 gi|20904797|gb|AAM30121.1| helicase [Methanosarcina mazei Go1]
          Length = 730

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L +I  +G +R R L ++ F +   ++ +SPE +A + G   KI  +I+ 
Sbjct: 652 LLDIRSVGRVRARKLYEAGFKSTAELAAASPEHIAVLVG--PKITERIFK 699


>gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO]
 gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO]
          Length = 868

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 181 DNIPGVTKIGEKTAIKLLKQYGSVEGIYE 209


>gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4]
 gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4]
          Length = 887

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL+ +G+V+ I  
Sbjct: 195 DNIPGVTKIGEKTALKLLKEYGSVEGIYE 223


>gi|325956533|ref|YP_004291945.1| competence protein ComEA [Lactobacillus acidophilus 30SC]
 gi|325333098|gb|ADZ07006.1| competence protein ComEA [Lactobacillus acidophilus 30SC]
          Length = 227

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++ GIG  +   ++      G+ K I     E L  + GI +K    + +  
Sbjct: 177 LQKLTGIGEKKAEQIIAYREQKGSFKKI-----EDLMQVSGIGEKTFASLKDQL 225


>gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
          Length = 845

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            I G+GP      L+ F +++ + ++  + L 
Sbjct: 197 GIPGVGPKTALNWLKKFPSLEEL-QAGLDELK 227


>gi|172039327|ref|YP_001805828.1| hypothetical protein cce_4414 [Cyanothece sp. ATCC 51142]
 gi|171700781|gb|ACB53762.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142]
          Length = 545

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 580 MISRSSPETLASIEGISKKIACKIYN 605
            ++ +S E L ++ GI + +A +I  
Sbjct: 487 NLNTASLEELETLPGIGRSLAERIIE 512


>gi|153006411|ref|YP_001380736.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029984|gb|ABS27752.1| helix-hairpin-helix motif [Anaeromyxobacter sp. Fw109-5]
          Length = 109

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 576 GTVKMI--SRSSPETLASIEGISKKIACKIYNH 606
           G+ + I  +R+S   L  + GI +K A  I  H
Sbjct: 28  GSAERIDLNRASVGELMRLPGIGEKRAQAIVAH 60


>gi|108759193|ref|YP_630295.1| transcription termination factor NusA [Myxococcus xanthus DK 1622]
 gi|108463073|gb|ABF88258.1| transcription termination factor NusA [Myxococcus xanthus DK 1622]
          Length = 566

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 560 INGIGPLRKRLL-LQSFGTVKMISRSSPETLAS---IEGISKKIACKIYNH 606
           + G+G      L L  + +V+ I  ++ + LA    + G+  K A ++ + 
Sbjct: 482 VRGVGEKTIEQLILAGYRSVEDI--ANEKDLAKLGDVPGVGIKKARQLKSA 530


>gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
 gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
          Length = 806

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 122 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 150


>gi|15965917|ref|NP_386270.1| NAD-dependent DNA ligase LigA [Sinorhizobium meliloti 1021]
 gi|307308227|ref|ZP_07587936.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
 gi|307319694|ref|ZP_07599119.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
 gi|81634276|sp|Q92NM8|DNLJ_RHIME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|15075186|emb|CAC46743.1| Probable DNA ligase [Sinorhizobium meliloti 1021]
 gi|306894625|gb|EFN25386.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
 gi|306901225|gb|EFN31831.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
          Length = 717

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 17/82 (20%)

Query: 541 AITTHRKRRKKAAYSPL---DEINGIGPLRKRLLLQSFGTVKMISRSSPE---------- 587
           AI     RR  A +  L     I  +G    +LL +S+G+ +    +  E          
Sbjct: 538 AIN---ARRSIALH-RLIYALGIRHVGETTAKLLARSYGSYEHFGAAMTEAAGFSGDAWN 593

Query: 588 TLASIEGISKKIACKIYNHFHK 609
            L SI+GI + +A  I   + +
Sbjct: 594 ELNSIDGIGEVVARAIVEFYKE 615


>gi|325293451|ref|YP_004279315.1| DNA ligase [Agrobacterium sp. H13-3]
 gi|325061304|gb|ADY64995.1| DNA ligase [Agrobacterium sp. H13-3]
          Length = 724

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVK----MISRSSP------ETLASIEGISKKIACKIYNHFH 608
            I  +G    +LL +S+GT +     +  ++         L SI+GI + +A  I   + 
Sbjct: 562 GIRHVGETTAKLLARSYGTYEHFEEAMKAAADPASDAWAELNSIDGIGEVVARAIIEFYK 621

Query: 609 K 609
           +
Sbjct: 622 E 622


>gi|294649267|ref|ZP_06726702.1| DNA repair protein RadC [Acinetobacter haemolyticus ATCC 19194]
 gi|292824820|gb|EFF83588.1| DNA repair protein RadC [Acinetobacter haemolyticus ATCC 19194]
          Length = 244

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGI-SKKIAC 601
           R+L+Q FG +  I  +S E L+   GI S K A 
Sbjct: 54  RILIQHFGGLNPIFDASLEDLSQFNGIASTKYAQ 87


>gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 964

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 222 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 250


>gi|227893368|ref|ZP_04011173.1| competence protein ComEA [Lactobacillus ultunensis DSM 16047]
 gi|227864783|gb|EEJ72204.1| competence protein ComEA [Lactobacillus ultunensis DSM 16047]
          Length = 228

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 555 SPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           S L ++ GIG  +   ++      G+ K      PE L  + GI +K    + +  
Sbjct: 176 SDLQKLTGIGEKKAEQIIAYREQNGSFKK-----PEDLMQVSGIGEKTFASLKDQL 226


>gi|219120827|ref|XP_002185645.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582494|gb|ACI65115.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 208

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            G+       LL  F  V+ ++ +S E +  + G+      ++++  HK
Sbjct: 157 KGVNKTDSAQLLSQFSNVRALAAASMEEMGLVMGMGGVKVKRLHDALHK 205


>gi|190572893|ref|YP_001970738.1| putative exodeoxyribonuclease [Stenotrophomonas maltophilia K279a]
 gi|190010815|emb|CAQ44424.1| putative exodeoxyribonuclease [Stenotrophomonas maltophilia K279a]
          Length = 311

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 7/39 (17%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I GI   G     +LL  FG++  +     E L  + 
Sbjct: 190 DNIPGISGVGSKSAAVLLAHFGSMDALY----ERLDEVP 224


>gi|171185192|ref|YP_001794111.1| ERCC4 domain-containing protein [Thermoproteus neutrophilus V24Sta]
 gi|170934404|gb|ACB39665.1| ERCC4 domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 219

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 557 LDEINGIGPLRKRLLLQSFGT 577
           L  + GIGP R   LL+ FGT
Sbjct: 160 LASLPGIGPKRAEELLKRFGT 180


>gi|18311102|ref|NP_563036.1| ComE operon protein [Clostridium perfringens str. 13]
 gi|18145785|dbj|BAB81826.1| ComE operon protein [Clostridium perfringens str. 13]
          Length = 260

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  +NGIG  + + ++      G  K     S + + ++ GI +K   KI +
Sbjct: 204 ASKETLMTLNGIGESKAQAIIDYRDEIGGFK-----SVDDITNVSGIGEKTLEKIKD 255


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 199 DNIPGCPGVGEKTAQKLIAEFGSIENLLE 227


>gi|238028403|ref|YP_002912634.1| DNA repair protein RadC [Burkholderia glumae BGR1]
 gi|237877597|gb|ACR29930.1| DNA repair protein RadC [Burkholderia glumae BGR1]
          Length = 266

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 572 LQSFGTVKMISRSSPETLASIEGISKK-----IA--CKIYNHFHKNTSHTP 615
           L+ FG+++ +  +SP  ++++ GI        +A    +     +  S  P
Sbjct: 93  LRHFGSLRALLDASPGAISALSGIGPARTAVLLATTELVRRALVERASERP 143


>gi|228905392|ref|ZP_04069347.1| Endo/excinuclease amino terminal domain [Bacillus thuringiensis
          IBL 4222]
 gi|228854212|gb|EEM98915.1| Endo/excinuclease amino terminal domain [Bacillus thuringiensis
          IBL 4222]
          Length = 75

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 16 LDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEAN 75
           +     LYVG + +L+ R+ S+++      ++     ++  I    T  +    +LE  
Sbjct: 3  FNKQFEPLYVGCSKDLKTRLPSHLYKGK--RKLEGYFDEVLFIGIKYTQGDPT--ILERK 58

Query: 76 MIKRLKPRFN 85
           IKR +P  N
Sbjct: 59 YIKRFEPLLN 68


>gi|169333819|ref|ZP_02861012.1| hypothetical protein ANASTE_00205 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259384|gb|EDS73350.1| hypothetical protein ANASTE_00205 [Anaerofustis stercorihominis DSM
           17244]
          Length = 737

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 562 GIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           GIGP + + ++  FG  T++ I    P  L+ ++GI KK A  +
Sbjct: 91  GIGPKKAKEIVDHFGDKTLE-ILEKDPMRLSEVKGIGKKTALLV 133


>gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT]
 gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT]
          Length = 878

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + GIG      L++ +G+++ +       L ++E IS KK+   + ++
Sbjct: 193 GVPGIGNKTALKLIKEYGSIENV-------LENVENISGKKMKQNLIDY 234


>gi|89890208|ref|ZP_01201718.1| putative excinuclease ABC, C subunit [Flavobacteria bacterium
          BBFL7]
 gi|89517123|gb|EAS19780.1| putative excinuclease ABC, C subunit [Flavobacteria bacterium
          BBFL7]
          Length = 107

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 9  CPG-VYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR 47
           PG VY M +     LYVG   +L++R+K +   +    +
Sbjct: 13 KPGYVYIMTNKNNTTLYVGVTSDLERRVKEH--KSKKDPK 50


>gi|115465747|ref|NP_001056473.1| Os05g0588200 [Oryza sativa Japonica Group]
 gi|48475097|gb|AAT44166.1| unknown protein [Oryza sativa Japonica Group]
 gi|113580024|dbj|BAF18387.1| Os05g0588200 [Oryza sativa Japonica Group]
 gi|215766440|dbj|BAG98668.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222632738|gb|EEE64870.1| hypothetical protein OsJ_19727 [Oryza sativa Japonica Group]
          Length = 248

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L  I GI       L Q+ G+++ I+++S + +     +S   A  I   F 
Sbjct: 185 VLTSIPGIDNHDANALAQAIGSIEAIAKASKKFILENTDLSTDKAETIVRFFR 237


>gi|19704244|ref|NP_603806.1| DNA repair protein radC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|25009025|sp|Q8RF15|Y909_FUSNN RecName: Full=UPF0758 protein FN0909
 gi|19714474|gb|AAL95105.1| DNA repair protein radC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 232

 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 19/30 (63%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598
           + LL  F ++  + ++S + L++I+G+ K 
Sbjct: 49  KELLNKFKSLDNVFKASFDKLSTIDGLGKN 78


>gi|319902123|ref|YP_004161851.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108]
 gi|319417154|gb|ADV44265.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108]
          Length = 665

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 26/45 (57%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF  ++ ++ ++ E L +I+ I +KIA  I  +F
Sbjct: 515 VGETVAKRIAKSFIDIEELANANLEVLINIDEIGEKIAKSIVTYF 559


>gi|281340601|gb|EFB16185.1| hypothetical protein PANDA_006513 [Ailuropoda melanoleuca]
          Length = 927

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L  + G+     R L+     +  ++  S + LA I G +   A ++Y+  H + + 
Sbjct: 863 LLRMPGVNAKNCRTLMHHVKNIAELASLSQDKLAGILG-NPGNAKQLYDFIHTSYAE 918


>gi|238917143|ref|YP_002930660.1| competence protein ComEA [Eubacterium eligens ATCC 27750]
 gi|238872503|gb|ACR72213.1| competence protein ComEA [Eubacterium eligens ATCC 27750]
          Length = 201

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKIYNHF 607
           +A  + L  + GIG  R   ++    T      I     E +  + GI +    KI N+ 
Sbjct: 145 RATENELMTLPGIGSSRAADIINYRNTNGRFDRI-----EDIMKVSGIKESAFNKIKNYI 199


>gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708]
 gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708]
          Length = 982

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I G   IG      LL ++ ++  I  +  + +
Sbjct: 216 DNIPGVRGIGEKTAVKLLNTYNSLDGIY-AKLDEI 249


>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
 gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
          Length = 878

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + GIG      L++ +G+++ +       L ++E IS KK+   + ++
Sbjct: 193 GVPGIGNKTALKLIKEYGSIENV-------LENVENISGKKMKQNLIDY 234


>gi|85708932|ref|ZP_01039998.1| DNA repair protein RadC [Erythrobacter sp. NAP1]
 gi|85690466|gb|EAQ30469.1| DNA repair protein RadC [Erythrobacter sp. NAP1]
          Length = 272

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 19/36 (52%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + L++ FG++  +  + P  +  ++G+ +  A  + 
Sbjct: 96  KALIERFGSLAGVLNADPAAMQRVKGVGRTSAAALK 131


>gi|301765386|ref|XP_002918113.1| PREDICTED: DNA repair endonuclease XPF-like [Ailuropoda
           melanoleuca]
          Length = 913

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L  + G+     R L+     +  ++  S + LA I G +   A ++Y+  H + + 
Sbjct: 849 LLRMPGVNAKNCRTLMHHVKNIAELASLSQDKLAGILG-NPGNAKQLYDFIHTSYAE 904


>gi|126334895|ref|XP_001375532.1| PREDICTED: similar to DNA repair protein [Monodelphis domestica]
          Length = 983

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           L ++ G+       L+    ++  ++  S + L+SI G +   A ++Y+  H + + 
Sbjct: 919 LLKMPGVNAKNCCSLMNHVKSIAELTTLSQDNLSSILG-NAANAKQLYDFIHTSYAE 974


>gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 924

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 240 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 268


>gi|288933007|ref|YP_003437066.1| DNA repair protein RadC [Klebsiella variicola At-22]
 gi|290511800|ref|ZP_06551168.1| DNA repair protein RadC [Klebsiella sp. 1_1_55]
 gi|288887736|gb|ADC56054.1| DNA repair protein RadC [Klebsiella variicola At-22]
 gi|289775590|gb|EFD83590.1| DNA repair protein RadC [Klebsiella sp. 1_1_55]
          Length = 221

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS-------KKIACKIYNHF 607
           + LLQ FG++  +  +    L +++G+        K IA     +F
Sbjct: 45  QALLQRFGSLYALLSADKAQLIAVDGLGLAKYAQLKGIAELARRYF 90


>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
          Length = 832

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  + GIG    R LL+ +G+++ +       L +++ +   I  KI  H
Sbjct: 193 LPGVKGIGEKTARKLLEEWGSLERL-------LKNLDRLRPAIREKILAH 235


>gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131]
 gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|194017234|ref|ZP_03055846.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061]
 gi|194011102|gb|EDW20672.1| holliday junction DNA helicase RuvA [Bacillus pumilus ATCC 7061]
          Length = 201

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 540 FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGI 595
           F++   + R +KA ++ L  + GIGP     +L S G     +  I R     L    G+
Sbjct: 55  FSLYGFQTREEKALFTKLLNVTGIGPKGALAILAS-GDPGAVISAIEREDEAFLIKFPGV 113

Query: 596 SKKIACKI 603
            KK A +I
Sbjct: 114 GKKTARQI 121


>gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
 gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
 gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|70606517|ref|YP_255387.1| DNA repair and recombination protein RadA [Sulfolobus
           acidocaldarius DSM 639]
 gi|76363310|sp|Q4JAT5|RADA_SULAC RecName: Full=DNA repair and recombination protein radA
 gi|68567165|gb|AAY80094.1| DNA recombination protein RadA [Sulfolobus acidocaldarius DSM 639]
          Length = 321

 Score = 38.5 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKI 603
            K   S L +++G+G      L+++ + +++ ++ ++P+ L+   GI +  A +I
Sbjct: 5   GKKVKS-LSDLSGVGQNILNKLVEAGYSSLEAVAVATPQDLSVAAGIPQTTAQRI 58


>gi|331702040|ref|YP_004398999.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329129383|gb|AEB73936.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 675

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    RL+ Q F  +  + ++S + +A I  +   IA  +  +F
Sbjct: 516 GIRHVGIKAARLIAQRFKNIDKVMQASAQDIAEIATMGMIIADSVVTYF 564


>gi|325684384|gb|EGD26553.1| metallo-beta-lactamase superfamily protein [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 613

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 6   MPECP----GVYQ---MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR----ITHMISQ 54
           +P       G Y      +  GR++  GKA N+  R++   ++   T R        +++
Sbjct: 201 LPNASENEVGTYITNVFRNAKGRIIVAGKASNI-NRVQQVFNAAAATGRRVLLTGRDVAK 259

Query: 55  INN 57
           I +
Sbjct: 260 IVH 262


>gi|239637599|ref|ZP_04678571.1| ComE operon protein 1 [Staphylococcus warneri L37603]
 gi|239596817|gb|EEQ79342.1| ComE operon protein 1 [Staphylococcus warneri L37603]
          Length = 225

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L ++ GIGP + + +++     G+       S + L +I+G   K   K+  +F
Sbjct: 170 ATEEQLMKVPGIGPSKAKEIIEYKNQKGSFN-----SIDDLKNIKGFGSKTFEKLKEYF 223


>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
 gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
          Length = 933

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKIYN 605
            + G+G      LLQ  G+++ + + + + +A++ G   SK +A K+ +
Sbjct: 192 GVPGVGDKTATALLQGIGSIEKLYQ-NLDDIAAL-GFRGSKTMAKKLAD 238


>gi|163759426|ref|ZP_02166511.1| DNA repair protein RadC [Hoeflea phototrophica DFL-43]
 gi|162283023|gb|EDQ33309.1| DNA repair protein RadC [Hoeflea phototrophica DFL-43]
          Length = 290

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 18/36 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + LL  FG++  +  +  + L  ++G+   +A  + 
Sbjct: 114 KALLARFGSLPEVLGAPVQLLTEVKGVGDSVATDLK 149


>gi|163790795|ref|ZP_02185221.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7]
 gi|159873975|gb|EDP68053.1| Holliday junction DNA helicase RuvA [Carnobacterium sp. AT7]
          Length = 204

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  Y  L  ++GIGP     +L      G V+ I       L    G+ KK A +I
Sbjct: 68  KQLYLKLLSVSGIGPKSGLAILANDDHQGLVQAIENEDAAYLTKFPGVGKKTASQI 123


>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
 gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
          Length = 933

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKIYN 605
            + G+G      LLQ  G+++ + + + + +A++ G   SK +A K+ +
Sbjct: 192 GVPGVGDKTATALLQGIGSIEKLYQ-NLDDIAAL-GFRGSKTMAKKLAD 238


>gi|332161518|ref|YP_004298095.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665748|gb|ADZ42392.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860793|emb|CBX71080.1| holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           enterocolitica W22703]
          Length = 205

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A +
Sbjct: 66  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREDITTLVKLPGVGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|318605500|emb|CBY26998.1| holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 205

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A +
Sbjct: 66  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREDITTLVKLPGVGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|315658088|ref|ZP_07910960.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           lugdunensis M23590]
 gi|315496417|gb|EFU84740.1| crossover junction ATP-dependent DNA helicase RuvA [Staphylococcus
           lugdunensis M23590]
          Length = 203

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           L ++ GIGP     +L +  T   + R+  +     L    GI KK A +I
Sbjct: 75  LIKVTGIGPKSALAILAT-STPNEVKRAIEDENDAYLTKFPGIGKKTARQI 124


>gi|313123475|ref|YP_004033734.1| hydrolase of the metallo-beta-lactamase superfamily [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280038|gb|ADQ60757.1| Predicted hydrolase of the metallo-beta-lactamase superfamily
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 613

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 6   MPECP----GVYQ---MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR----ITHMISQ 54
           +P       G Y      +  GR++  GKA N+  R++   ++   T R        +++
Sbjct: 201 LPNASENEVGTYITNVFRNAKGRIIVAGKASNI-NRVQQVFNAAAATGRRVLLTGRDVAK 259

Query: 55  INN 57
           I +
Sbjct: 260 IVH 262


>gi|270290977|ref|ZP_06197200.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4]
 gi|304385248|ref|ZP_07367593.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus
           acidilactici DSM 20284]
 gi|270280373|gb|EFA26208.1| Holliday junction DNA helicase RuvA [Pediococcus acidilactici 7_4]
 gi|304328455|gb|EFL95676.1| crossover junction ATP-dependent DNA helicase RuvA [Pediococcus
           acidilactici DSM 20284]
          Length = 195

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 557 LDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           L ++ GIGP     +L      G ++ ++      L     I  K A +I
Sbjct: 72  LLKVKGIGPKSALAILANDDHQGFIRAVNNDDVNYLKKFPKIGPKAAKQI 121


>gi|238792583|ref|ZP_04636216.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           intermedia ATCC 29909]
 gi|238728218|gb|EEQ19739.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           intermedia ATCC 29909]
          Length = 188

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A +
Sbjct: 50  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREDITTLVKLPGVGKKTAER 107

Query: 603 I 603
           +
Sbjct: 108 L 108


>gi|238788520|ref|ZP_04632313.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC
           33641]
 gi|238723433|gb|EEQ15080.1| Holliday junction DNA helicase RuvA [Yersinia frederiksenii ATCC
           33641]
          Length = 194

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A +
Sbjct: 57  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREDITTLVKLPGVGKKTAER 114

Query: 603 I 603
           +
Sbjct: 115 L 115


>gi|238796296|ref|ZP_04639805.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC
           43969]
 gi|238719741|gb|EEQ11548.1| Holliday junction DNA helicase RuvA [Yersinia mollaretii ATCC
           43969]
          Length = 196

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A +
Sbjct: 57  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREDITTLVKLPGVGKKTAER 114

Query: 603 I 603
           +
Sbjct: 115 L 115


>gi|238786430|ref|ZP_04630350.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           bercovieri ATCC 43970]
 gi|238712664|gb|EEQ04756.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           bercovieri ATCC 43970]
          Length = 196

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A +
Sbjct: 57  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREDITTLVKLPGVGKKTAER 114

Query: 603 I 603
           +
Sbjct: 115 L 115


>gi|238756969|ref|ZP_04618157.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae
           ATCC 35236]
 gi|238704799|gb|EEP97328.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia aldovae
           ATCC 35236]
          Length = 205

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A +
Sbjct: 66  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREDITTLVKLPGVGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|238762969|ref|ZP_04623936.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           kristensenii ATCC 33638]
 gi|238698727|gb|EEP91477.1| Holliday junction ATP-dependent DNA helicase ruvA [Yersinia
           kristensenii ATCC 33638]
          Length = 189

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A +
Sbjct: 50  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREDITTLVKLPGVGKKTAER 107

Query: 603 I 603
           +
Sbjct: 108 L 108


>gi|168215747|ref|ZP_02641372.1| putative comE operon protein 1 [Clostridium perfringens NCTC 8239]
 gi|182382236|gb|EDT79715.1| putative comE operon protein 1 [Clostridium perfringens NCTC 8239]
          Length = 260

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  +NGIG  + + ++      G  K     S + + ++ GI +K   KI +
Sbjct: 204 ASKETLMTLNGIGESKAQAIIDYRDEIGGFK-----SVDDITNVSGIGEKTLEKIKD 255


>gi|241206272|ref|YP_002977368.1| AraC family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860162|gb|ACS57829.1| transcriptional regulator, AraC family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 314

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 544 THRKRRKKAAYSPLDEINGIGPL--RKRLLLQSFGTVKMISRS-SPETLASIEGISKKIA 600
            HR+   ++ +S L E+    P   R +  L    +   +  + S E LA +  +S    
Sbjct: 185 YHRRAGGQSQFSALLELE---PKSDRIQKALAHARS--NLKSALSVEELAEVAHLSP--- 236

Query: 601 CKIYNHFHKNTSHTP 615
            +    F   T  +P
Sbjct: 237 RQFSRAFRDETGQSP 251


>gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 898

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMI 581
            + GIGP   + LL ++G ++ +
Sbjct: 191 GVPGIGPKTAKKLLDAYGDLEGV 213


>gi|123442635|ref|YP_001006612.1| Holliday junction DNA helicase RuvA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166231457|sp|A1JRJ9|RUVA_YERE8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|122089596|emb|CAL12445.1| Holliday junction DNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 205

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A +
Sbjct: 66  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREDITTLVKLPGVGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|91773310|ref|YP_566002.1| DNA mismatch repair protein MutS-like protein [Methanococcoides
           burtonii DSM 6242]
 gi|91712325|gb|ABE52252.1| MutS domain protein [Methanococcoides burtonii DSM 6242]
          Length = 700

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 557 LDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIA 600
           L +I  IG    +   + FG     +  I      +++ +EG+ ++ A
Sbjct: 4   LQDIPRIGEKMAKRFQEHFGGEDRAMDAILSGDIASISEVEGVGQRYA 51


>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
 gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
          Length = 926

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
            + G+G      LLQ+ G+V+ I  ++ +    +  +  + A  +      N    
Sbjct: 191 GVPGVGEKTALALLQNLGSVEDIY-ANLD---KVPTLEVRGAKSLAKKLEDNRDKA 242


>gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232]
 gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMI 581
           D I G   +G    + L+  FG+++ +
Sbjct: 190 DNIPGCPGVGEKTAQKLIAQFGSIENL 216


>gi|315634723|ref|ZP_07890007.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter
           segnis ATCC 33393]
 gi|315476671|gb|EFU67419.1| crossover junction ATP-dependent DNA helicase RuvA [Aggregatibacter
           segnis ATCC 33393]
          Length = 204

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 554 YSPLDEINGIGPLRKRLLL----QSFGTVKM---ISRS------SPETLASIEGISKKIA 600
            S L +I G+G      LL      F  VK      ++      S ET+A+ E  ++ +A
Sbjct: 107 LSKLVKIPGVGKKTAERLLVELKGKFKGVKNNDFFMQADHLPSLSMETIATAEPSNEAVA 166

Query: 601 CKI 603
             I
Sbjct: 167 ALI 169



 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPET 588
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V   + +   E 
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVDEFAYAIEREE 106

Query: 589 LAS---IEGISKKIACKIYNHFH 608
           L+    I G+ KK A ++     
Sbjct: 107 LSKLVKIPGVGKKTAERLLVELK 129


>gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13]
          Length = 877

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL+ FG ++ +     E++  + G  KK+  K+
Sbjct: 193 GVPGVGEKTAIKLLKEFGNIETL----LESIDQVSG--KKLKEKL 231


>gi|308071005|ref|YP_003872610.1| hypothetical protein PPE_04308 [Paenibacillus polymyxa E681]
 gi|305860284|gb|ADM72072.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 358

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L++ FG    +  ++ E L  ++GI +  A  I     +
Sbjct: 308 NLVERFGRFPHVITATIEELDEVDGIGEVRARTIKEGLKR 347


>gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
 gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|257463623|ref|ZP_05628014.1| DNA repair protein radC [Fusobacterium sp. D12]
 gi|317061175|ref|ZP_07925660.1| DNA repair protein radC [Fusobacterium sp. D12]
 gi|313686851|gb|EFS23686.1| DNA repair protein radC [Fusobacterium sp. D12]
          Length = 227

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           + LL  FG ++ + ++S E L +I+G+ +  
Sbjct: 49  KELLHRFGNLESVCKASKEELETIKGVKENT 79


>gi|253579911|ref|ZP_04857179.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848910|gb|EES76872.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 754

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ FG  T++++    PE LA ++GIS+K A +I
Sbjct: 91  IRGIGAALAARIVRKFGDDTLRIVEE-EPERLAEVKGISEKKAREI 135


>gi|237755691|ref|ZP_04584300.1| DNA protecting protein DprA [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692141|gb|EEP61140.1| DNA protecting protein DprA [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 356

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 553 AYSPLDE--INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
             S L+   I GIG +  + L+  F T + I  +    L       + IA  I N
Sbjct: 4   ILSSLEISFIKGIGNITFKNLILKFKTSENILNTDFNQLKE--NFGENIANLIVN 56


>gi|268318025|ref|YP_003291744.1| DNA repair protein RadC [Rhodothermus marinus DSM 4252]
 gi|262335559|gb|ACY49356.1| DNA repair protein RadC [Rhodothermus marinus DSM 4252]
          Length = 245

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 27/92 (29%)

Query: 535 DEAHRFAITTHRKRRKKAAY---SPLDE------INGIGPLRKR----------LLLQSF 575
           DEA R         R+K      S L +      I G G   K+           L++++
Sbjct: 23  DEADR--------PREKLMRRGPSALSDAELIALIFGSGTRTKQGSISAVQLGQALIRAY 74

Query: 576 GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           G++  +++   + L  + G+    A ++   F
Sbjct: 75  GSLYALAQRDLKELTRVAGVGPAKAVQLVAAF 106


>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
 gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
          Length = 1010

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           K   S L  I G+GP   + +++ FG  T+++I       L  +EGI +K   +I  
Sbjct: 337 KYLGSGL--IKGVGPRFAQRIVRKFGTDTIEVIEN-EIGRLREVEGIGEKRILQIKE 390


>gi|225026859|ref|ZP_03716051.1| hypothetical protein EUBHAL_01113 [Eubacterium hallii DSM 3353]
 gi|224955866|gb|EEG37075.1| hypothetical protein EUBHAL_01113 [Eubacterium hallii DSM 3353]
          Length = 736

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           I G+GP     +++ F      I  S PE LA ++GIS K A  I   F +  
Sbjct: 88  IKGMGPALAARVIKKFKGNTFDIIESEPERLAEVKGISLKKAMDIAVQFQEKQ 140


>gi|146295265|ref|YP_001179036.1| RecD/TraA family helicase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145408841|gb|ABP65845.1| ATP-dependent DNA helicase, RecD/TraA family [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 741

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 560 INGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I GIG    + +++ FG     I +  PE L ++ G++ +   +I N F
Sbjct: 89  IKGIGQKTAKKIVEMFGDDTMRILQEEPEKLLAVRGMTPEKVERIKNMF 137


>gi|145636553|ref|ZP_01792221.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittHH]
 gi|145270378|gb|EDK10313.1| Holliday junction DNA helicase motor protein [Haemophilus
           influenzae PittHH]
          Length = 204

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSS 585
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     I R  
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYAIEREE 106

Query: 586 PETLASIEGISKKIACKIYNHFH 608
              L  I G+ KK A ++     
Sbjct: 107 LSKLTKIPGVGKKTAERLLVELK 129



 Score = 37.4 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 554 YSPLDEINGIGPLRKRLLLQSFGT-VKMISRSS--PET--LASIEGI 595
            S L +I G+G      LL       K I +S    E+  + S+  I
Sbjct: 107 LSKLTKIPGVGKKTAERLLVELKGKFKGIKQSDFFVESTHIRSVPSI 153


>gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
 gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|118444147|ref|YP_877905.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT]
 gi|118134603|gb|ABK61647.1| Holliday junction DNA helicase RuvA [Clostridium novyi NT]
          Length = 215

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP----ET---LASIEGISKKIACKI 603
           +A ++ L  I+G+G      LL    ++  +S        E    L    GI KKIA +I
Sbjct: 84  RAMFNLLLTISGVGAKAALSLL----SISNVSSLKVAIMTEDYKMLTRAPGIGKKIAQRI 139


>gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
 gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
 gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
 gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS]
 gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|332534903|ref|ZP_08410723.1| competence protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035638|gb|EGI72128.1| competence protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 98

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 14/49 (28%)

Query: 557 LDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKI 599
           L ++ GIG  + + ++        F +V          L+ ++GI KK+
Sbjct: 48  LAKLPGIGKKKAQAIVDYREENGEFKSV--------SDLSQVKGIGKKL 88


>gi|325579043|ref|ZP_08148999.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159278|gb|EGC71412.1| crossover junction ATP-dependent DNA helicase RuvA [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 203

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSS 585
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V+     I R  
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVEQFAYAIEREE 106

Query: 586 PETLASIEGISKKIACKIYNHFH 608
              L  I G+ KK A ++     
Sbjct: 107 LSKLVKIPGVGKKTAERLLVELK 129


>gi|291522304|emb|CBK80597.1| DNA ligase, NAD-dependent [Coprococcus catus GD/7]
          Length = 653

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 543 TTHR-----KRRKKAAYSPL---DEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIE 593
           +  R     ++ +K   + L     I  IG    RLL Q +   ++ +  +S E L +I+
Sbjct: 473 SYQRLMASIQKARKVTLAKLIYSLGILNIGLSNARLLCQHYRNDLQAMLAASTEELTAID 532

Query: 594 GISKKIACKIYNHF 607
           GI   IA    ++F
Sbjct: 533 GIGPVIAGSFTDYF 546


>gi|241760730|ref|ZP_04758822.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114]
 gi|241318911|gb|EER55437.1| holliday junction DNA helicase RuvA [Neisseria flavescens SK114]
          Length = 194

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQRL--RDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      ++   +L  R++AH    FA        ++A +  L +++GIG      +L
Sbjct: 36  YNLPSVGEAVHLYTQLVVREDAHLLFGFA-----SAEERATFRQLVKVSGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +      ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-NADELAQAIAEEDVKRLSSAPGIGKKTAER 123


>gi|284039688|ref|YP_003389618.1| excinuclease ABC C subunit domain protein [Spirosoma linguale DSM
           74]
 gi|283818981|gb|ADB40819.1| Excinuclease ABC C subunit domain protein [Spirosoma linguale DSM
           74]
          Length = 511

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 11  GVY--QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRI 48
           G+Y  +  +      YVGKA N+  R+K +  + +   RI
Sbjct: 214 GIYILRFTNQE---FYVGKAKNISNRLKQHHRTYSDIERI 250


>gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842]
 gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842]
          Length = 877

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     + L  + G  KK+  K+
Sbjct: 192 GVPGVGEKTAIKLLTQFGTVEEVY----DNLDQVSG--KKLKEKL 230


>gi|171463919|ref|YP_001798032.1| helix-hairpin-helix motif [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193457|gb|ACB44418.1| helix-hairpin-helix motif [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 142

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 13/57 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACK 602
           A  S L+ I GIGP + + ++        F     + +        + GI  K   K
Sbjct: 41  ATQSELESIKGIGPAKAKTIIAECLDGGHFQDANDLQK-------RVRGIGMKSVEK 90


>gi|91203074|emb|CAJ72713.1| strongly similar to DNA helicase RuvA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 196

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKM-ISRSSPET----LASIEGISKKIACKIYN 605
           +  +  L  +NG+GP     +L   G+    I  +        L  I+G+ KK A +I  
Sbjct: 68  RGLFQLLLSVNGVGPTMAIAILS--GSTANDIKCAIAREDTKALMRIKGVGKKTAERIVL 125

Query: 606 HFHKN 610
              ++
Sbjct: 126 ELKES 130


>gi|56807538|ref|ZP_00365463.1| COG0258: 5'-3' exonuclease (including N-terminal domain of PolI)
           [Streptococcus pyogenes M49 591]
          Length = 410

 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 195 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 223


>gi|332184195|gb|AEE26449.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida 3523]
          Length = 216

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIA 600
             + +  K  +  L ++NGIG      +L    +   +  I       LA++ GI KK A
Sbjct: 62  GFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKTA 121

Query: 601 CK----IYNHFHKNTSH 613
            +    IY+   K  + 
Sbjct: 122 ERLVVEIYDKLLKMANE 138


>gi|326928825|ref|XP_003210574.1| PREDICTED: DNA repair endonuclease XPF-like [Meleagris gallopavo]
          Length = 856

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           L ++ G+       L+    ++  +   S + L  I G +   A ++++  H
Sbjct: 792 LLKMPGVNAKNCHALMNHVKSIAELVTLSKDKLCEILG-NAANATQLFDFIH 842


>gi|301786799|ref|XP_002928821.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like
            [Ailuropoda melanoleuca]
          Length = 2048

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 559  EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             I  I  +    +   F +VK ++ SSP+ ++    I+ + A +IY + H
Sbjct: 1978 SIPNISYITALNMCHRFSSVKEMTNSSPQEISMYAQITHQKAEEIYRYIH 2027


>gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 891

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     + L  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----DNLDQVSG--KKLKEKL 244


>gi|212526684|ref|XP_002143499.1| DNA repair protein RAD1, putative [Penicillium marneffei ATCC
           18224]
 gi|210072897|gb|EEA26984.1| DNA repair protein RAD1, putative [Penicillium marneffei ATCC
           18224]
          Length = 980

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 538 HRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISK 597
           HR     H +  +    S    + G+ P+    L     ++  I+  S + L     + K
Sbjct: 909 HRV---FH-QLPQDMLRS----VPGVTPVVLERLSLETNSIHEIANMSVDELD--PLVGK 958

Query: 598 KIACKIYNHFHKNTSHTPT 616
             A KI   F K+     T
Sbjct: 959 GTARKIVRFFRKSVFEDET 977


>gi|254374431|ref|ZP_04989913.1| holliday junction DNA helicase RuvA [Francisella novicida
           GA99-3548]
 gi|151572151|gb|EDN37805.1| holliday junction DNA helicase RuvA [Francisella novicida
           GA99-3548]
          Length = 216

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIA 600
             + +  K  +  L ++NGIG      +L    +   +  I       LA++ GI KK A
Sbjct: 62  GFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKTA 121

Query: 601 CK----IYNHFHKNTSH 613
            +    IY+   K  + 
Sbjct: 122 ERLVVEIYDKLLKMANE 138


>gi|208779418|ref|ZP_03246764.1| holliday junction DNA helicase RuvA [Francisella novicida FTG]
 gi|254372980|ref|ZP_04988469.1| hypothetical protein FTCG_00553 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570707|gb|EDN36361.1| hypothetical protein FTCG_00553 [Francisella novicida GA99-3549]
 gi|208745218|gb|EDZ91516.1| holliday junction DNA helicase RuvA [Francisella novicida FTG]
 gi|332678321|gb|AEE87450.1| Holliday junction DNA helicase RuvA [Francisella cf. novicida Fx1]
          Length = 216

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIA 600
             + +  K  +  L ++NGIG      +L    +   +  I       LA++ GI KK A
Sbjct: 62  GFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKTA 121

Query: 601 CK----IYNHFHKNTSH 613
            +    IY+   K  + 
Sbjct: 122 ERLVVEIYDKLLKMANE 138


>gi|118497616|ref|YP_898666.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. novicida U112]
 gi|195536317|ref|ZP_03079324.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           novicida FTE]
 gi|166230552|sp|A0Q6P7|RUVA_FRATN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118423522|gb|ABK89912.1| holliday junction DNA helicase, subunit A [Francisella novicida
           U112]
 gi|194372794|gb|EDX27505.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           novicida FTE]
          Length = 216

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIA 600
             + +  K  +  L ++NGIG      +L    +   +  I       LA++ GI KK A
Sbjct: 62  GFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKTA 121

Query: 601 CK----IYNHFHKNTSH 613
            +    IY+   K  + 
Sbjct: 122 ERLVVEIYDKLLKMANE 138


>gi|224456850|ref|ZP_03665323.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370278|ref|ZP_04986283.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874591|ref|ZP_05247301.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|90135024|sp|Q5NH17|RUVA_FRATT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151568521|gb|EDN34175.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840590|gb|EET19026.1| holliday junction DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158951|gb|ADA78342.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 216

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIA 600
             + +  K  +  L ++NGIG      +L    +   +  I       LA++ GI KK A
Sbjct: 62  GFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKTA 121

Query: 601 CK----IYNHFHKNTSH 613
            +    IY+   K  + 
Sbjct: 122 ERLVVEIYDKLLKMANE 138


>gi|89256283|ref|YP_513645.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314735|ref|YP_763458.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502349|ref|YP_001428414.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167011087|ref|ZP_02276018.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367618|ref|ZP_04983639.1| holliday junction DNA helicase subunit A [Francisella tularensis
           subsp. holarctica 257]
 gi|254369266|ref|ZP_04985278.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953118|ref|ZP_06557739.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313646|ref|ZP_06804230.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122325244|sp|Q0BM63|RUVA_FRATO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|123094517|sp|Q2A3Q7|RUVA_FRATH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230551|sp|A7NBV5|RUVA_FRATF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89144114|emb|CAJ79371.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129634|gb|ABI82821.1| crossover junction endodeoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253429|gb|EBA52523.1| holliday junction DNA helicase subunit A [Francisella tularensis
           subsp. holarctica 257]
 gi|156252952|gb|ABU61458.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122216|gb|EDO66356.1| holliday junction DNA helicase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 216

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIA 600
             + +  K  +  L ++NGIG      +L    +   +  I       LA++ GI KK A
Sbjct: 62  GFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKTA 121

Query: 601 CK----IYNHFHKNTSH 613
            +    IY+   K  + 
Sbjct: 122 ERLVVEIYDKLLKMANE 138


>gi|56707779|ref|YP_169675.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670250|ref|YP_666807.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis FSC198]
 gi|56604271|emb|CAG45291.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320583|emb|CAL08674.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. tularensis FSC198]
          Length = 217

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIA 600
             + +  K  +  L ++NGIG      +L    +   +  I       LA++ GI KK A
Sbjct: 63  GFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKTA 122

Query: 601 CK----IYNHFHKNTSH 613
            +    IY+   K  + 
Sbjct: 123 ERLVVEIYDKLLKMANE 139


>gi|317968249|ref|ZP_07969639.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205]
          Length = 372

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 545 HRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS---SPETLASIEGISKKIAC 601
           HR+            I+ +G +  + L ++F +   +S +   +PE + ++ GI  +IA 
Sbjct: 206 HRQLYG-------LGIHHVGEVNAKALAKAFPSAADLSTAATETPEAITAVYGIGAEIAQ 258

Query: 602 KIYNHF 607
            +   F
Sbjct: 259 SLQQWF 264


>gi|262374189|ref|ZP_06067465.1| DNA repair protein [Acinetobacter junii SH205]
 gi|262310747|gb|EEY91835.1| DNA repair protein [Acinetobacter junii SH205]
          Length = 246

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 11/52 (21%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGI-SKKIACK----------IYNHFHK 609
           R+L+Q FG +  I  +S E L+   GI S K A            + N+FH+
Sbjct: 54  RILIQHFGGLNPIFDASLEDLSQFNGIASTKYAQLMAVKELGRRYLNNYFHQ 105


>gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 891

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     + L  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----DNLDQVSG--KKLKEKL 244


>gi|206579335|ref|YP_002236000.1| DNA repair protein RadC [Klebsiella pneumoniae 342]
 gi|238054489|sp|B5XTG5|Y116_KLEP3 RecName: Full=UPF0758 protein KPK_0116
 gi|206568393|gb|ACI10169.1| DNA repair protein RadC [Klebsiella pneumoniae 342]
          Length = 221

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS-------KKIACKIYNHF 607
           + LLQ FG++  +  +    L +++G+        K IA     +F
Sbjct: 45  QALLQRFGSLYALLSADKAQLIAVDGLGLAKYAQLKGIAELARRYF 90


>gi|156630385|sp|Q8EGP9|XNI_SHEON RecName: Full=Protein Xni
          Length = 261

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            I GIGP     LL++F T+     ++    +S+  +  K A K+
Sbjct: 182 GIPGIGPKSAAELLRTFRTL-----ATL--FSSLPNLGAKQAKKL 219


>gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 891

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL  FGTV+ +     + L  + G  KK+  K+
Sbjct: 206 GVPGVGEKTAIKLLTQFGTVEEVY----DNLDQVSG--KKLKEKL 244


>gi|323126984|gb|ADX24281.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 652

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 30/54 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L++ G ++ +     E +A+I+G+   IA  +  +F ++++
Sbjct: 502 GIRHIGAKASRLILETCGDIEHLLTVREEDIATIDGLGMVIAKSLVQYFQQDSA 555


>gi|319638740|ref|ZP_07993499.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa
           C102]
 gi|317399981|gb|EFV80643.1| Holliday junction ATP-dependent DNA helicase ruvA [Neisseria mucosa
           C102]
          Length = 194

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      ++   +  +R++AH    FA        ++A +  L +++GIG      +L
Sbjct: 36  YNLPSVGETVHLYTQLVIREDAHLLFGFA-----SAEERATFRQLVKVSGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +      ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-NADELAQAVAEEDVKRLSSAPGIGKKTAER 123


>gi|293378443|ref|ZP_06624609.1| M protein trans-acting positive regulator (MGA) HTH domain protein
           [Enterococcus faecium PC4.1]
 gi|292642976|gb|EFF61120.1| M protein trans-acting positive regulator (MGA) HTH domain protein
           [Enterococcus faecium PC4.1]
          Length = 488

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 73/312 (23%), Gaps = 3/312 (0%)

Query: 77  IKRLK--PRFNILLRDDK-SFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEK 133
           IK+ K  P +NI L   K S+ Y LI   +K P       +     S    F     +  
Sbjct: 72  IKKEKDFPIYNIYLHFYKASYNYHLIDFMYKYPRSVLKDFAKEQFTSVSTVFRYAKLLIP 131

Query: 134 TINSLQRTFFLRSCADSVFRHRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSG 193
                  TF       +      R    +     +   + +       + + +       
Sbjct: 132 YFRRYHITFHPFQLELNASEANIRSFFYYFYWNSTRESSDKWPFHIEQKEIEKYIVAFER 191

Query: 194 GNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNL 253
                     + +    L  + E +   + R+         +D  +N +  +S   N + 
Sbjct: 192 IYDITLTIFQKRVFSFWLAINIERSSFRKVRVDNEYKSVISDDPHFNLLKKWSKQINLSF 251

Query: 254 ACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDKPCPENILLSEEAEETS 313
              + CF +                 S            +   +   + +          
Sbjct: 252 NSDELCFLYRIIYSFGVIDGNAIYENSHAYAHQRQNTCSYRAVENLEKVLQSMFRFSLDI 311

Query: 314 LLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKF 373
                 F    +  +  +             +        +        +  L+      
Sbjct: 312 KDPELIFNFIAFHERSYLFYGNPDLFFNRTYIEEMKEEEPRTYHIMEKLKKELQANADLD 371

Query: 374 ALPHIPKRIEIY 385
               +    +++
Sbjct: 372 VSKKLENWAQLF 383


>gi|251782129|ref|YP_002996431.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390758|dbj|BAH81217.1| NAD-dependent DNA ligase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 652

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 30/54 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    RL+L++ G ++ +     E +A+I+G+   IA  +  +F ++++
Sbjct: 502 GIRHIGAKASRLILETCGDIEHLLTVREEDIATIDGLGMVIAKSLVQYFQQDSA 555


>gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23]
 gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23]
          Length = 875

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F GTV+ +     E ++      KK+  K+  
Sbjct: 191 GIPGVGEKTALKLLHEFGGTVESVLE-HAEEIS-----GKKLKEKVLE 232


>gi|260798636|ref|XP_002594306.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
 gi|317374877|sp|C3ZBT0|FEN1_BRAFL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|229279539|gb|EEN50317.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
          Length = 380

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISR 583
           D I GIGP R   L++ + +++ I +
Sbjct: 236 DSIRGIGPKRAIELIRQYKSIEEILK 261


>gi|205374328|ref|ZP_03227126.1| DNA repair protein RadC [Bacillus coahuilensis m4-4]
          Length = 190

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIA 600
           LL +F  ++++  +S E L S++GI    A
Sbjct: 54  LLHTFDGLRLLKDASLEELTSMKGIGPAKA 83


>gi|226698801|sp|A4G1U8|RUVA_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|193222212|emb|CAL60485.2| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans]
          Length = 192

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I GIG      +L   G +V  +S + + +    L  I GI KK A +
Sbjct: 69  RNVFKQLVKITGIGARTALSILS--GMSVADLSNAITLQEAGRLTKIPGIGKKTAER 123


>gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613]
          Length = 875

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      L++ + +++ +     E + +I+G  KK+   ++ +
Sbjct: 193 GVPGIGEKTAFKLIKEYKSIETV----FENIENIKG--KKLKENLHEY 234


>gi|134093539|ref|YP_001098614.1| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans]
          Length = 161

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I GIG      +L   G +V  +S + + +    L  I GI KK A +
Sbjct: 38  RNVFKQLVKITGIGARTALSILS--GMSVADLSNAITLQEAGRLTKIPGIGKKTAER 92


>gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 875

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F GTV+ +     E ++      KK+  K+  
Sbjct: 191 GIPGVGEKTALKLLHEFGGTVESVLE-HAEEIS-----GKKLKEKVLE 232


>gi|114652855|ref|XP_509928.2| PREDICTED: Fanconi anemia group M protein isoform 2 [Pan troglodytes]
          Length = 2048

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 559  EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             I  I  +    +   F +VK ++ SS + ++    ++ + A +IY + H
Sbjct: 1978 SIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIH 2027


>gi|25029081|ref|NP_739135.1| DNA integrity scanning protein DisA [Corynebacterium efficiens
           YS-314]
 gi|259505924|ref|ZP_05748826.1| DNA-binding protein [Corynebacterium efficiens YS-314]
 gi|81748854|sp|Q8FMH9|DISA_COREF RecName: Full=DNA integrity scanning protein disA
 gi|23494368|dbj|BAC19335.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166405|gb|EEW50959.1| DNA-binding protein [Corynebacterium efficiens YS-314]
          Length = 356

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 20/38 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            L+  FG +  ++ +S E +++++G+    A  I +  
Sbjct: 315 KLVGEFGNLHALTSASVEEISAVDGVGSLWARHITDGL 352


>gi|332842130|ref|XP_003314350.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Pan troglodytes]
          Length = 2022

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 559  EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             I  I  +    +   F +VK ++ SS + ++    ++ + A +IY + H
Sbjct: 1952 SIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIH 2001


>gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99]
          Length = 885

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F GTV+ +     E ++      KK+  K+  
Sbjct: 201 GIPGVGEKTALKLLHEFGGTVESVLE-HAEEIS-----GKKLKEKVLE 242


>gi|302384219|ref|YP_003820042.1| DNA repair protein RadC [Brevundimonas subvibrioides ATCC 15264]
 gi|302194847|gb|ADL02419.1| DNA repair protein RadC [Brevundimonas subvibrioides ATCC 15264]
          Length = 249

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 569 RLLLQSFGTVKMISRSSPETLASI 592
           + LL  FG++  +  +S E + ++
Sbjct: 64  KALLSRFGSLAAVLAASVEDMMTV 87


>gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
 gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
          Length = 875

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F GTV+ +     E ++      KK+  K+  
Sbjct: 191 GIPGVGEKTALKLLHEFGGTVESVLE-HAEEIS-----GKKLKEKVLE 232


>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
 gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
          Length = 941

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLISEFGSIENLLE 220


>gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 876

 Score = 38.5 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 13/60 (21%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D I G+   G      LL+ F TV+ +       +  + G       K+      + S  
Sbjct: 188 DNIPGVAGVGEKTAIKLLKKFSTVENVYN----HIEEVSG------KKLKEKLENSKSDA 237


>gi|322514922|ref|ZP_08067937.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus
           ureae ATCC 25976]
 gi|322119110|gb|EFX91264.1| crossover junction ATP-dependent DNA helicase RuvA [Actinobacillus
           ureae ATCC 25976]
          Length = 201

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET- 588
           +R++AH    FA     +++ +  +  L + NG+GP     +L +  +V   + +     
Sbjct: 53  VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVSQFANAVENEE 106

Query: 589 ---LASIEGISKKIACKIYNHFH 608
              L  I  I +K A ++     
Sbjct: 107 LAKLTKIPSIGRKTAERLLVELK 129


>gi|317507551|ref|ZP_07965270.1| DNA repair protein RadC [Segniliparus rugosus ATCC BAA-974]
 gi|316254152|gb|EFV13503.1| DNA repair protein RadC [Segniliparus rugosus ATCC BAA-974]
          Length = 216

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            LL ++G V+ ++R+ PE LA   G+    A ++   F
Sbjct: 47  ALLTAWGGVRGLARALPEELARTPGVGPAKAARLAASF 84


>gi|296140497|ref|YP_003647740.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Tsukamurella paurometabola DSM 20162]
 gi|296028631|gb|ADG79401.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Tsukamurella paurometabola DSM 20162]
          Length = 277

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 15/53 (28%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGIS-KKIAC 601
            LD + G+GP     ++        F         + + L  + GI   K+A 
Sbjct: 226 ELDRLPGVGPATAAAIIAYREQNGPFK--------TVDDLGKVAGIGDAKLAK 270


>gi|168187973|ref|ZP_02622608.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str.
           Eklund]
 gi|169294186|gb|EDS76319.1| holliday junction DNA helicase RuvA [Clostridium botulinum C str.
           Eklund]
          Length = 200

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSP----ET---LASIEGISKKIACKI 603
           +A ++ L  I+G+G      LL    ++  +S        E    L    GI KKIA +I
Sbjct: 69  RAMFNLLLTISGVGAKAALSLL----SISNVSNLKVSIMQEDYKMLTRAPGIGKKIAQRI 124


>gi|119586186|gb|EAW65782.1| Fanconi anemia, complementation group M, isoform CRA_b [Homo sapiens]
          Length = 2083

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 559  EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             I  I  +    +   F +VK ++ SS + ++    ++ + A +IY + H
Sbjct: 2013 SIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIH 2062


>gi|260903852|ref|ZP_05912174.1| Holliday junction DNA helicase, RuvA subunit [Brevibacterium linens
           BL2]
          Length = 206

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
              +  L  I+GIGP     +L   G       IS      L  + GI KK A +I
Sbjct: 76  NHTFEVLLSISGIGPRLAMAILSVMGPGELAAAISNQDANALTRVPGIGKKGASRI 131


>gi|11467597|ref|NP_043743.1| hypothetical protein AlmafMp24 [Allomyces macrogynus]
 gi|1236427|gb|AAC49244.1| ORF301 [Allomyces macrogynus]
          Length = 301

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 17/98 (17%)

Query: 8   ECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQ--INNIRFTVT-- 63
              G+Y +++     +Y+G A NL KR+  +++S+    R+   I +  +++  F +   
Sbjct: 72  NKAGIYGIINNKTNKIYIGSAVNLHKRLVEHLYSDKTNIRLQRSIGKDGLSSFSFIIFEY 131

Query: 64  ----CTEVE-----ALLLEAN--MIKRLKP--RFNILL 88
                + +E      LLLE+    I+ + P   +N  L
Sbjct: 132 HDFNDSILEFIDFNDLLLESETFYIQSINPDFLYNFKL 169


>gi|86740076|ref|YP_480476.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3]
 gi|86566938|gb|ABD10747.1| Holliday junction DNA helicase subunit RuvA [Frankia sp. CcI3]
          Length = 247

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTV---KMISRSSPET----LASIEGISKKIACK 602
            +  +  L    G+GP   + +L     V     + R+  E     L  + GI +K A +
Sbjct: 67  ARDVFEILQSAAGVGPKLAQAVL----GVHDPDTVRRAVAEEDLAVLTKVPGIGRKGAQR 122

Query: 603 I 603
           I
Sbjct: 123 I 123


>gi|78186167|ref|YP_374210.1| helix-hairpin-helix DNA-binding, class 1 [Chlorobium luteolum DSM
           273]
 gi|78166069|gb|ABB23167.1| Helix-hairpin-helix DNA-binding, class 1 [Chlorobium luteolum DSM
           273]
          Length = 170

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ----SFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A  + L +I G+GP+    L+       G ++     S + L  ++G+ KK    +  H 
Sbjct: 112 ATSTELQQIPGVGPVMAGRLIDFRTAHHGHIE-----SYDALLEVKGVGKKKLEVLKKHL 166


>gi|296133957|ref|YP_003641204.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermincola sp. JR]
 gi|296032535|gb|ADG83303.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermincola potens JR]
          Length = 249

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            I+ +S + L S+ GI   +A +I  +
Sbjct: 190 NINTASAKELDSLPGIGPALAERIIEY 216


>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 941

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLISEFGSIENLLE 220


>gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPET 588
            + GIG    R L+  FGT++ +  ++ + 
Sbjct: 191 GVPGIGEKTARTLIAQFGTLENLL-ANIDQ 219


>gi|71892277|ref|YP_278011.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|123747814|sp|Q492G5|DNLJ_BLOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|71796383|gb|AAZ41134.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 595

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 27/54 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I G+G      L   + T++ ++ +  ++L++++ +   IA  IY+ F    +
Sbjct: 522 GIYGVGETVASNLAIVYKTIENLAAADLQSLSNLKYVGPIIANNIYHFFRNPDN 575


>gi|330973309|gb|EGH73375.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 670

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  +++ + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|330939980|gb|EGH43181.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 731

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  +++ + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|330897709|gb|EGH29128.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 657

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  +++ + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
 gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
          Length = 884

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            I G+G      LL  +G+V+ +  +    L 
Sbjct: 191 GIPGVGEKTALKLLHQYGSVEEVL-AHTNELK 221


>gi|298248385|ref|ZP_06972190.1| helicase, RecD/TraA family [Ktedonobacter racemifer DSM 44963]
 gi|297551044|gb|EFH84910.1| helicase, RecD/TraA family [Ktedonobacter racemifer DSM 44963]
          Length = 887

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +K   S L  I G+GP   + ++  FG  T++ +  +  E L  +  I  K    I   +
Sbjct: 121 QKYLGSGL--IKGVGPATAKAIVTYFGKETLE-VFDTQIERLDEVPNIGTKKLEMIARAW 177

Query: 608 HKNTS 612
            ++  
Sbjct: 178 EEHKD 182


>gi|297566359|ref|YP_003685331.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946]
 gi|296850808|gb|ADH63823.1| PHP domain protein [Meiothermus silvanus DSM 9946]
          Length = 576

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 542 ITTHRKRRKKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRS 584
           I  H +  +K     L+   I G+GP   +LL    G  ++  +  +
Sbjct: 78  IAAHEELARKVPAGVLEVMRIPGVGPKTAQLLWSRLGVDSLAKLRAA 124


>gi|289810713|ref|ZP_06541342.1| nucleotide excision repair endonuclease [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
          Length = 77

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 5  QMPECPGVYQMLDIAGR-VLYVGK 27
          + P  PGVY     +    LY+GK
Sbjct: 39 EAPALPGVYIFHSESDTLPLYIGK 62


>gi|218296583|ref|ZP_03497311.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
 gi|218243125|gb|EED09657.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
          Length = 536

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  + GIG    R LL+ +G+++ +       L +++ +   I  KI  H
Sbjct: 193 LPGVKGIGEKTARKLLEEWGSLERL-------LKNLDRLRPAIREKILAH 235


>gi|168205927|ref|ZP_02631932.1| putative comE operon protein 1 [Clostridium perfringens E str.
           JGS1987]
 gi|170662613|gb|EDT15296.1| putative comE operon protein 1 [Clostridium perfringens E str.
           JGS1987]
          Length = 254

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  +NGIG  + + ++      G  K     S + + ++ GI +K   KI +
Sbjct: 198 ASKETLMTLNGIGESKAQAIIDYRDEIGGFK-----SVDDITNVSGIGEKTLEKIKD 249


>gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459]
 gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
          Length = 875

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F GTV+ +     E ++      KK+  K+  
Sbjct: 191 GIPGVGEKTALKLLHEFGGTVESVLE-HAEEIS-----GKKLKEKVLE 232


>gi|301155365|emb|CBW14831.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 155

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 4  EQMPECPGVYQM----LDIAGRVLYVGKAYNLQKRIKSY 38
          + +P   G+Y             LYVG++ N+++R K +
Sbjct: 29 KTIPNVAGIYIFYRQTKSGEEEALYVGQSQNIRERFKQH 67


>gi|282851684|ref|ZP_06261049.1| comEA protein [Lactobacillus gasseri 224-1]
 gi|282557652|gb|EFB63249.1| comEA protein [Lactobacillus gasseri 224-1]
          Length = 227

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++NG+G  +   ++      G  K I     E L  + GI +K   K+ +  
Sbjct: 177 LQKLNGVGQKKAEQIIAYRDQNGGFKQI-----EDLTKVTGIGEKTFEKLKDQL 225


>gi|238853441|ref|ZP_04643820.1| competence protein [Lactobacillus gasseri 202-4]
 gi|238834013|gb|EEQ26271.1| competence protein [Lactobacillus gasseri 202-4]
          Length = 227

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++NG+G  +   ++      G  K I     E L  + GI +K   K+ +  
Sbjct: 177 LQKLNGVGQKKAEQIIAYRDQNGGFKQI-----EDLTKVTGIGEKTFEKLKDQL 225


>gi|192360858|ref|YP_001981526.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107]
 gi|229560014|sp|B3PB58|RUVA_CELJU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|190687023|gb|ACE84701.1| Holliday junction DNA helicase RuvA [Cellvibrio japonicus Ueda107]
          Length = 205

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           +R ++ +  L ++NG+GP     +L    +    + +  ++ + L  + GI +K A ++
Sbjct: 66  QRDRSLFRTLIKVNGVGPKLAVAILSGMESDDIARCVRDNNIKALTRVPGIGQKTAERL 124


>gi|187954507|gb|AAI40777.1| FANCM protein [Homo sapiens]
 gi|219518301|gb|AAI44512.1| FANCM protein [Homo sapiens]
          Length = 2022

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 559  EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             I  I  +    +   F +VK ++ SS + ++    ++ + A +IY + H
Sbjct: 1952 SIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIH 2001


>gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
 gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I
 gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
          Length = 871

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G   IGP     L+  FGTV+ I   S E ++SI+
Sbjct: 186 DNIPGVPSIGPKTASSLITQFGTVENIFN-SLEQVSSIK 223


>gi|74959747|ref|NP_065988.1| Fanconi anemia group M protein [Homo sapiens]
 gi|78099254|sp|Q8IYD8|FANCM_HUMAN RecName: Full=Fanconi anemia group M protein; Short=Protein FACM;
            AltName: Full=ATP-dependent RNA helicase FANCM; AltName:
            Full=Fanconi anemia-associated polypeptide of 250 kDa;
            Short=FAAP250; AltName: Full=Protein Hef ortholog
 gi|71912519|gb|AAZ53290.1| Fanconi anemia complementation group M [Homo sapiens]
 gi|119586185|gb|EAW65781.1| Fanconi anemia, complementation group M, isoform CRA_a [Homo sapiens]
 gi|162319388|gb|AAI56491.1| Fanconi anemia, complementation group M [synthetic construct]
          Length = 2048

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 559  EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             I  I  +    +   F +VK ++ SS + ++    ++ + A +IY + H
Sbjct: 1978 SIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIH 2027


>gi|320352803|ref|YP_004194142.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM
           2032]
 gi|320121305|gb|ADW16851.1| Holliday junction DNA helicase RuvA [Desulfobulbus propionicus DSM
           2032]
          Length = 208

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 541 AIT---THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIE 593
           AI+     RK  +K  +  L  ++GIGP   + +L   G V+ +  +        L ++ 
Sbjct: 57  AISLYGFSRKE-EKDLFLLLITVSGIGPKLAQTILSGIG-VEALCGAITAKDLSQLTALP 114

Query: 594 GISKKIACKI 603
           G+ KK A ++
Sbjct: 115 GVGKKTAQRL 124


>gi|300723091|ref|YP_003712389.1| Holliday junction helicase subunit A [Xenorhabdus nematophila ATCC
           19061]
 gi|297629606|emb|CBJ90209.1| Holliday junction helicase, subunit A [Xenorhabdus nematophila ATCC
           19061]
          Length = 205

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  I + +  +L  + G+ KK A +
Sbjct: 66  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VTAIEQEAIASLVKLPGVGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|260893333|ref|YP_003239430.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Ammonifex degensii KC4]
 gi|260865474|gb|ACX52580.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Ammonifex degensii KC4]
          Length = 194

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 14/57 (24%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS------SPETLASIEGISKKIACKIYNH 606
            L  + GIGP   R +++         R+      S E LA + GI  +   ++  +
Sbjct: 142 ALQTLPGIGPTLARRIVEY--------RAKNGPFTSVEDLAKVPGIGPRRLEQLREY 190


>gi|262040687|ref|ZP_06013925.1| DNA repair protein RadC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042051|gb|EEW43084.1| DNA repair protein RadC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 221

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS-------KKIACKIYNHF 607
           + LLQ FG++  +  +    L +++G+        K IA     +F
Sbjct: 45  QALLQRFGSLYALLSADKAQLIAVDGLGLAKYAQLKGIAELARRYF 90


>gi|158334366|ref|YP_001515538.1| NAD-dependent DNA ligase LigA [Acaryochloris marina MBIC11017]
 gi|190359221|sp|B0C308|DNLJ_ACAM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|158304607|gb|ABW26224.1| DNA ligase, NAD-dependent [Acaryochloris marina MBIC11017]
          Length = 675

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTPT 616
            I  +G +  +LL +++ TV  +     + +A+I GI  +IA  +Y  F      TPT
Sbjct: 523 GIRHVGSVNAQLLTENYPTVDALMAVDGDKIATIHGIGPEIAQSVYEWFQ-----TPT 575


>gi|152972484|ref|YP_001337630.1| DNA repair protein RadC [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238897079|ref|YP_002921825.1| DNA repair protein RadC [Klebsiella pneumoniae NTUH-K2044]
 gi|329996935|ref|ZP_08302632.1| DNA repair protein RadC [Klebsiella sp. MS 92-3]
 gi|166218784|sp|A6TFM9|Y3939_KLEP7 RecName: Full=UPF0758 protein KPN78578_39390
 gi|150957333|gb|ABR79363.1| DNA repair protein RadC [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238549407|dbj|BAH65758.1| DNA repair protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328539225|gb|EGF65254.1| DNA repair protein RadC [Klebsiella sp. MS 92-3]
          Length = 221

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGIS-------KKIACKIYNHF 607
           + LLQ FG++  +  +    L +++G+        K IA     +F
Sbjct: 45  QALLQRFGSLYALLSADKAQLIAVDGLGLAKYAQLKGIAELARRYF 90


>gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555]
 gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016]
 gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555]
 gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI-SKKIACKIYNH 606
            + GIG      L++ + +++ +       L +I+ I  KK+   + N+
Sbjct: 193 GVPGIGEKTALKLIKEYKSIENV-------LCNIDNIKGKKVQENLKNY 234


>gi|118619340|ref|YP_907672.1| DNA integrity scanning protein DisA [Mycobacterium ulcerans Agy99]
 gi|118571450|gb|ABL06201.1| conserved hypothetical RuvA-like protein [Mycobacterium ulcerans
           Agy99]
          Length = 358

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           L+++FG++  +  +S   L S+EGI    A  +     +    T
Sbjct: 311 LVRAFGSLHGLLAASASDLQSVEGIGSTWAPHVREGLSQLAEST 354


>gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175]
 gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220]
 gi|332312007|gb|EGJ25102.1| DNA polymerase I [Listeria monocytogenes str. Scott A]
          Length = 875

 Score = 38.5 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F GTV+ +     E ++      KK+  K+  
Sbjct: 191 GIPGVGEKTALKLLHEFGGTVESVLE-HAEEIS-----GKKLKEKVLE 232


>gi|330469616|ref|YP_004407359.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Verrucosispora maris AB-18-032]
 gi|328812587|gb|AEB46759.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Verrucosispora maris AB-18-032]
          Length = 252

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+ S L+ + G+GP+  R +++     G  +     S   L  + GI      ++ +
Sbjct: 197 ASQSQLETLPGVGPVLARRIIEHRDEHGGFR-----SVSDLRQVNGIGDARYEELKD 248


>gi|224419232|ref|ZP_03657238.1| competence protein ComEA helix-hairpin-helix region [Helicobacter
           canadensis MIT 98-5491]
          Length = 67

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 13/53 (24%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKK 598
           KA    L  I GIG  + + ++       F ++        + L +++G   K
Sbjct: 22  KANKEELMSIKGIGEAKAQAIIDYREKTPFKSI--------DDLKNVKGFGSK 66



 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           FG V  +++++ E L SI+GI +  A  I ++
Sbjct: 15  FGAVD-LNKANKEELMSIKGIGEAKAQAIIDY 45


>gi|210633919|ref|ZP_03297913.1| hypothetical protein COLSTE_01830 [Collinsella stercoris DSM 13279]
 gi|210159011|gb|EEA89982.1| hypothetical protein COLSTE_01830 [Collinsella stercoris DSM 13279]
          Length = 256

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 12/54 (22%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSS-----PETLASIEGISKKIACKIY 604
            LD + G+GP   + ++           ++     PE L  + GI +K   K+ 
Sbjct: 205 ELDALPGVGPATAQAIIDD-------REANGPFTAPEDLMRVSGIGEKKYEKLK 251


>gi|187931869|ref|YP_001891854.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229560033|sp|B2SH67|RUVA_FRATM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|187712778|gb|ACD31075.1| holliday junction DNA helicase, subunit A [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 216

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIA 600
             + +  K  +  L ++NGIG      +L    +   +  I       LA++ GI KK A
Sbjct: 62  GFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKTA 121

Query: 601 CK----IYNHFHKNTSH 613
            +    IY+   K  + 
Sbjct: 122 ERLVIEIYDKLLKMANE 138


>gi|134302038|ref|YP_001122007.1| Holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166230553|sp|A4IY85|RUVA_FRATW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134049815|gb|ABO46886.1| holliday junction DNA helicase RuvA [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 216

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 544 THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIA 600
             + +  K  +  L ++NGIG      +L    +   +  I       LA++ GI KK A
Sbjct: 62  GFKSKVDKKVFQELIKVNGIGARTAIAILSGMDSKTLLHCIENKDYALLATVPGIGKKTA 121

Query: 601 CK----IYNHFHKNTSH 613
            +    IY+   K  + 
Sbjct: 122 ERLVVEIYDKLLKMANE 138


>gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988]
 gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561]
 gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161]
 gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818]
 gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818]
          Length = 875

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F GTV+ +     E ++      KK+  K+  
Sbjct: 191 GIPGVGEKTALKLLHEFGGTVESVLE-HAEEIS-----GKKLKEKVLE 232


>gi|300703309|ref|YP_003744911.1| DNA repair protein RadC fork [Ralstonia solanacearum CFBP2957]
 gi|299070972|emb|CBJ42281.1| DNA repair protein radC homolog, associated with replication fork
           [Ralstonia solanacearum CFBP2957]
          Length = 224

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R LL  FG++  +  +S    ++I G+        Y   H
Sbjct: 48  RELLAHFGSLGRLCHASQGDFSAIHGMGPAK----YAQLH 83


>gi|297161907|gb|ADI11619.1| 5'-3' exonuclease [Streptomyces bingchenggensis BCW-1]
          Length = 308

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           L  + GIG      LL S+G +  I  ++ +
Sbjct: 204 LPGVPGIGEKTAAKLLASYGDLAGIMAAAAD 234


>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 931

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKIYNHFHKNTS 612
            + G+G      LLQ  G+++ +   + + +AS+ G   SK +A K+ +  +K  +
Sbjct: 192 GVPGVGDKTATALLQGIGSLEKLYD-NLDDIASL-GFRGSKTMAKKLVD--NKEEA 243


>gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S]
          Length = 875

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F GTV+ +     E ++      KK+  K+  
Sbjct: 191 GIPGVGEKTALKLLHEFGGTVESVLE-HAEEIS-----GKKLKEKVLE 232


>gi|160934306|ref|ZP_02081693.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
 gi|156866979|gb|EDO60351.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
          Length = 661

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIAC 601
            I  IG    +LL Q F T+  I ++ PE +A+I+G  + +A 
Sbjct: 509 GIRHIGLRAAKLLTQRFPTIDQILKAPPEEIAAIDGFGQIMAE 551


>gi|90407102|ref|ZP_01215291.1| hypothetical protein PCNPT3_02640 [Psychromonas sp. CNPT3]
 gi|90311824|gb|EAS39920.1| hypothetical protein PCNPT3_02640 [Psychromonas sp. CNPT3]
          Length = 104

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 560 INGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           I G+G  +   +++    +G  K I     E L ++ GI K +  KI    
Sbjct: 57  IKGLGEKKAGEIVKYRETYGKFKKI-----EDLLNVTGIGKMLLEKIRPFL 102


>gi|313807372|gb|EFS45859.1| comEA protein [Propionibacterium acnes HL087PA2]
          Length = 283

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 14/59 (23%)

Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            S  + I+G+GP+    ++        F        +S + L  I GI  K   KI  H
Sbjct: 230 QSEFETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPH 280


>gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
 gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
          Length = 839

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 9/47 (19%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASI--EGISKKI 599
           D I G+   G      LL  +G++  I     E L  +   G+ KK+
Sbjct: 196 DNIPGVRGVGAKTAAKLLARWGSLDRIY----EHLDEVTPPGVRKKL 238


>gi|304373271|ref|YP_003856480.1| DNA polymerase I [Mycoplasma hyorhinis HUB-1]
 gi|304309462|gb|ADM21942.1| DNA polymerase I [Mycoplasma hyorhinis HUB-1]
 gi|330723856|gb|AEC46226.1| 5'-3' exonuclease [Mycoplasma hyorhinis MCLD]
          Length = 296

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
            + GIGP   + L+  F  ++ I  ++ + L
Sbjct: 198 GVPGIGPKTAKSLISQFDNIENIL-ANLDQL 227


>gi|251793066|ref|YP_003007792.1| Holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534459|gb|ACS97705.1| holliday junction DNA helicase RuvA [Aggregatibacter aphrophilus
           NJ8700]
          Length = 204

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPETLA---SIEGISKKIACK 602
           ++  +  +  L + NG+GP     +L +  +V   + +   E L+    I GI KK A +
Sbjct: 65  QKTDRTLFRELIKTNGVGPKLALAILSAM-SVDEFAYAIEREELSRLVKIPGIGKKTAER 123

Query: 603 IYNHFHKNTSHTPT 616
           +            T
Sbjct: 124 LLVELKGKFKEVKT 137


>gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 880

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|238919502|ref|YP_002933017.1| Holliday junction DNA helicase RuvA [Edwardsiella ictaluri 93-146]
 gi|238869071|gb|ACR68782.1| holliday junction DNA helicase RuvA, putative [Edwardsiella
           ictaluri 93-146]
          Length = 204

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++A +  L ++NG+GP     +L     Q F  V  + R     L  + G+ KK A 
Sbjct: 67  NKQERALFRELIKVNGVGPKLALAILSGMSAQQF--VTAVEREEVAALVKLPGVGKKTAE 124

Query: 602 KI 603
           ++
Sbjct: 125 RL 126


>gi|229817634|ref|ZP_04447916.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM
           20098]
 gi|229785423|gb|EEP21537.1| hypothetical protein BIFANG_02904 [Bifidobacterium angulatum DSM
           20098]
          Length = 205

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYN 605
            K  +  L ++NG+GP     LL +  T   ++++        LA   GI KK A KI  
Sbjct: 67  SKKMFLQLIKVNGVGPKVALSLLSTL-TANDLAKAVADNDATALAKAPGIGKKGAQKIIL 125

Query: 606 HFHKNTS 612
               + +
Sbjct: 126 ELKGSIN 132


>gi|289427196|ref|ZP_06428912.1| comEA protein [Propionibacterium acnes J165]
 gi|295130456|ref|YP_003581119.1| comEA protein [Propionibacterium acnes SK137]
 gi|289159665|gb|EFD07853.1| comEA protein [Propionibacterium acnes J165]
 gi|291376154|gb|ADE00009.1| comEA protein [Propionibacterium acnes SK137]
 gi|313772361|gb|EFS38327.1| comEA protein [Propionibacterium acnes HL074PA1]
 gi|313809881|gb|EFS47602.1| comEA protein [Propionibacterium acnes HL083PA1]
 gi|313818420|gb|EFS56134.1| comEA protein [Propionibacterium acnes HL046PA2]
 gi|313820182|gb|EFS57896.1| comEA protein [Propionibacterium acnes HL036PA1]
 gi|313823010|gb|EFS60724.1| comEA protein [Propionibacterium acnes HL036PA2]
 gi|313825062|gb|EFS62776.1| comEA protein [Propionibacterium acnes HL063PA1]
 gi|313830794|gb|EFS68508.1| comEA protein [Propionibacterium acnes HL007PA1]
 gi|313834012|gb|EFS71726.1| comEA protein [Propionibacterium acnes HL056PA1]
 gi|314925411|gb|EFS89242.1| comEA protein [Propionibacterium acnes HL036PA3]
 gi|314960144|gb|EFT04246.1| comEA protein [Propionibacterium acnes HL002PA2]
 gi|314973219|gb|EFT17315.1| comEA protein [Propionibacterium acnes HL053PA1]
 gi|314975891|gb|EFT19986.1| comEA protein [Propionibacterium acnes HL045PA1]
 gi|314978350|gb|EFT22444.1| comEA protein [Propionibacterium acnes HL072PA2]
 gi|314983641|gb|EFT27733.1| comEA protein [Propionibacterium acnes HL005PA1]
 gi|314987589|gb|EFT31680.1| comEA protein [Propionibacterium acnes HL005PA2]
 gi|314990074|gb|EFT34165.1| comEA protein [Propionibacterium acnes HL005PA3]
 gi|315080791|gb|EFT52767.1| comEA protein [Propionibacterium acnes HL078PA1]
 gi|315084460|gb|EFT56436.1| comEA protein [Propionibacterium acnes HL027PA2]
 gi|315085800|gb|EFT57776.1| comEA protein [Propionibacterium acnes HL002PA3]
 gi|315088783|gb|EFT60759.1| comEA protein [Propionibacterium acnes HL072PA1]
 gi|315096128|gb|EFT68104.1| comEA protein [Propionibacterium acnes HL038PA1]
 gi|327326047|gb|EGE67837.1| ComE operon protein 1 [Propionibacterium acnes HL096PA2]
 gi|327332081|gb|EGE73818.1| ComE operon protein 1 [Propionibacterium acnes HL096PA3]
 gi|327443286|gb|EGE89940.1| comEA protein [Propionibacterium acnes HL013PA2]
 gi|327446070|gb|EGE92724.1| comEA protein [Propionibacterium acnes HL043PA2]
 gi|327447948|gb|EGE94602.1| comEA protein [Propionibacterium acnes HL043PA1]
 gi|328753612|gb|EGF67228.1| comEA protein [Propionibacterium acnes HL020PA1]
 gi|328760452|gb|EGF74020.1| ComE operon protein 1 [Propionibacterium acnes HL099PA1]
 gi|332675293|gb|AEE72109.1| late competence protein ComEA [Propionibacterium acnes 266]
          Length = 283

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 14/59 (23%)

Query: 554 YSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            S  + I+G+GP+    ++        F        +S + L  I GI  K   KI  H
Sbjct: 230 QSEFETIDGVGPVMAGKIMAWRQEHGQF--------ASVDQLREISGIGAKTFEKIKPH 280


>gi|153953522|ref|YP_001394287.1| DNA-binding competence protein [Clostridium kluyveri DSM 555]
 gi|219854144|ref|YP_002471266.1| hypothetical protein CKR_0801 [Clostridium kluyveri NBRC 12016]
 gi|146346403|gb|EDK32939.1| Predicted DNA-binding competence protein [Clostridium kluyveri DSM
           555]
 gi|219567868|dbj|BAH05852.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 200

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  I GIG +  + ++        F ++        E L +++ I  K   KI +
Sbjct: 144 ATKEELKTIPGIGDVTAQKIMDYREQNGGFSSI--------EDLKNVDRIGDKTLEKIKD 195


>gi|145349446|ref|XP_001419144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|317374919|sp|A4S1G4|FEN1_OSTLU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|144579375|gb|ABO97437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 389

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRSSPETL 589
           D I GIGP     L++  G+++ I     E +
Sbjct: 237 DTIRGIGPKTALKLIKEHGSIEKI----LEEI 264


>gi|119586187|gb|EAW65783.1| Fanconi anemia, complementation group M, isoform CRA_c [Homo sapiens]
          Length = 1979

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 559  EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             I  I  +    +   F +VK ++ SS + ++    ++ + A +IY + H
Sbjct: 1909 SIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIH 1958


>gi|83589434|ref|YP_429443.1| competence protein ComEA helix-hairpin-helix region [Moorella
           thermoacetica ATCC 39073]
 gi|83572348|gb|ABC18900.1| Competence protein ComEA helix-hairpin-helix region [Moorella
           thermoacetica ATCC 39073]
          Length = 224

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 14/49 (28%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK 598
            LD + GIGP   + +L        F T+        E L ++ GI  K
Sbjct: 172 ELDSLPGIGPTLAQRILDYRTQKGPFRTI--------EDLQNVSGIGAK 212


>gi|10047267|dbj|BAB13422.1| KIAA1596 protein [Homo sapiens]
          Length = 1151

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 559  EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             I  I  +    +   F +VK ++ SS + ++    ++ + A +IY + H
Sbjct: 1081 SIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIH 1130


>gi|170761011|ref|YP_001788290.1| putative comE operon protein 1 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408000|gb|ACA56411.1| putative comE operon protein 1 [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 202

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  I GIG +  + +L      GT K       E L +I  I  K   KI  
Sbjct: 146 ASKEELKSIPGIGDVTAQKILDYREKQGTFKN-----FEDLKAIGRIGDKTIEKIKE 197



 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 583 RSSPETLASIEGISKKIACKIYNH 606
            +S E L SI GI    A KI ++
Sbjct: 145 SASKEELKSIPGIGDVTAQKILDY 168


>gi|311746334|ref|ZP_07720119.1| excinuclease ABC subunit C [Algoriphagus sp. PR1]
 gi|311746335|ref|ZP_07720120.1| excinuclease ABC subunit C [Algoriphagus sp. PR1]
 gi|126576570|gb|EAZ80848.1| excinuclease ABC subunit C [Algoriphagus sp. PR1]
 gi|126576571|gb|EAZ80849.1| excinuclease ABC subunit C [Algoriphagus sp. PR1]
          Length = 79

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 12 VY-QMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEAL 70
          VY    D  G+  YVG+  +L+ R+  +        R       I++       +  EA+
Sbjct: 5  VYILFSDKLGKY-YVGQTKDLKSRLSRHNQGRERFTRTGCPWKLIHS---IYCSSRSEAM 60

Query: 71 LLEANMIKRL 80
          +LE   IK L
Sbjct: 61 ILEKK-IKNL 69


>gi|78067948|ref|YP_370717.1| SMF protein [Burkholderia sp. 383]
 gi|77968693|gb|ABB10073.1| DNA protecting protein DprA [Burkholderia sp. 383]
          Length = 448

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            G+ P   + LL +FG+   + R+  + +A++ G     A  +
Sbjct: 36  PGLTPAVLQALLDAFGSPDALLRAPDQAIAAVTG--PAAAQAV 76


>gi|317495143|ref|ZP_07953513.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424]
 gi|316914565|gb|EFV36041.1| Holliday junction DNA helicase RuvA [Gemella moribillum M424]
          Length = 192

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           + +K  +  L ++ G+GP     +L    +   +  I +     L    GI KK A +I
Sbjct: 63  KEQKKVFLLLLKVKGVGPKSALAILAGATSEEIISAIEKQDVNYLTKFPGIGKKSAQQI 121


>gi|238751590|ref|ZP_04613080.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380]
 gi|238710152|gb|EEQ02380.1| Holliday junction DNA helicase RuvA [Yersinia rohdei ATCC 43380]
          Length = 204

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A +
Sbjct: 66  KQERALFRELIKVNGVGPKLALAILSGMSAQQF--VAAVEREDITTLIKLPGVGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|229553335|ref|ZP_04442060.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1]
 gi|229313309|gb|EEN79282.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1]
          Length = 180

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 20/35 (57%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYM 39
           ++P+  GVY + +    + YVG++ ++  R+  + 
Sbjct: 87  KLPDGEGVYVIHNTTRDLYYVGQSIHVINRLSQHF 121


>gi|221199269|ref|ZP_03572313.1| DNA repair protein RadC [Burkholderia multivorans CGD2M]
 gi|221205829|ref|ZP_03578844.1| DNA repair protein RadC [Burkholderia multivorans CGD2]
 gi|221174667|gb|EEE07099.1| DNA repair protein RadC [Burkholderia multivorans CGD2]
 gi|221180554|gb|EEE12957.1| DNA repair protein RadC [Burkholderia multivorans CGD2M]
          Length = 214

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           R LL  FG+++ +  ++P    +  GI    A
Sbjct: 38  RALLVRFGSLRGLLDATPADFGACPGIGPARA 69


>gi|221211489|ref|ZP_03584468.1| DNA repair protein RadC [Burkholderia multivorans CGD1]
 gi|221168850|gb|EEE01318.1| DNA repair protein RadC [Burkholderia multivorans CGD1]
          Length = 256

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           R LL  FG+++ +  ++P    +  GI    A
Sbjct: 80  RALLVRFGSLRGLLDATPADFGACPGIGPARA 111


>gi|254466524|ref|ZP_05079935.1| DNA repair protein RadC [Rhodobacterales bacterium Y4I]
 gi|206687432|gb|EDZ47914.1| DNA repair protein RadC [Rhodobacterales bacterium Y4I]
          Length = 254

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           R LL++FG    +  +SPE LAS++GI   +
Sbjct: 78  RQLLETFGDFNRVVTASPERLASVKGIGDAV 108


>gi|188996508|ref|YP_001930759.1| DNA protecting protein DprA [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931575|gb|ACD66205.1| DNA protecting protein DprA [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 356

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 553 AYSPLDE--INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
             S L+   I GIG +  + L+  F T + I  +    L       + IA  I N
Sbjct: 4   ILSSLEISFIKGIGNITFKNLILKFKTSENILNTDFNQLKE--NFGENIANLIVN 56


>gi|154684606|ref|YP_001419767.1| DNA integrity scanning protein DisA [Bacillus amyloliquefaciens
           FZB42]
 gi|154350457|gb|ABS72536.1| YacK [Bacillus amyloliquefaciens FZB42]
          Length = 360

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           FG +  I+ ++ E L  +EGI +  A KI     +
Sbjct: 315 FGFLPSITEATVEELDDVEGIGEVRAKKIKKGLKR 349


>gi|187928475|ref|YP_001898962.1| replication initiation factor [Ralstonia pickettii 12J]
 gi|187725365|gb|ACD26530.1| replication initiation factor [Ralstonia pickettii 12J]
          Length = 365

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 586 PETLASIEGISKKIAC-KIYNHFHKNTSHTPT 616
            + LA +EG+  ++A   ++   H   S TPT
Sbjct: 321 VDELA-VEGVPSRLAKFALHEFLHPKASETPT 351


>gi|161523974|ref|YP_001578986.1| DNA repair protein RadC [Burkholderia multivorans ATCC 17616]
 gi|189351265|ref|YP_001946893.1| DNA repair protein RadC [Burkholderia multivorans ATCC 17616]
 gi|160341403|gb|ABX14489.1| DNA repair protein RadC [Burkholderia multivorans ATCC 17616]
 gi|189335287|dbj|BAG44357.1| DNA repair protein [Burkholderia multivorans ATCC 17616]
          Length = 256

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           R LL  FG+++ +  ++P    +  GI    A
Sbjct: 80  RALLVRFGSLRGLLDATPADFGACPGIGPARA 111


>gi|257075819|ref|ZP_05570180.1| PHP domain protein [Ferroplasma acidarmanus fer1]
          Length = 572

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 557 LDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYN 605
           L  I G+GP +  LL +  G   +  + +++ E  +A I G  KK    I  
Sbjct: 96  LFRIEGLGPKKAILLYKKLGIKNLNDLKKAAEEHKIADIPGFGKKSEELILK 147


>gi|295425148|ref|ZP_06817853.1| late competence protein required for DNA binding and uptake
           [Lactobacillus amylolyticus DSM 11664]
 gi|295065207|gb|EFG56110.1| late competence protein required for DNA binding and uptake
           [Lactobacillus amylolyticus DSM 11664]
          Length = 229

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++NGIG  R   ++      G  K I     E L  + GI +K    + +  
Sbjct: 179 LQKLNGIGEKRAEQIIAYREQNGDFKKI-----EDLMQVSGIGEKTFAALKDQL 227


>gi|294139913|ref|YP_003555891.1| exodeoxyribonuclease IX [Shewanella violacea DSS12]
 gi|293326382|dbj|BAJ01113.1| exodeoxyribonuclease IX [Shewanella violacea DSS12]
          Length = 252

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + GIGP     LL+ F ++  I   S +       +  K A K+
Sbjct: 182 GVPGIGPKSAVELLKIFRSLANIYS-SIDE------VGAKQAKKL 219


>gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
 gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
          Length = 912

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IG  +   +   + +++ I   + + L +I+GI   +   + N
Sbjct: 190 DGIPGVTKIGEKKALAIFSQYDSLEKIYD-NIDNLKNIDGIGPSLIKNLIN 239


>gi|257882881|ref|ZP_05662534.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
 gi|257818539|gb|EEV45867.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
          Length = 674

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG ++ +S+S  E++ +++ I   IA  +  +F    
Sbjct: 511 GIRHVGAKAAKILAEHFGDLETLSKSDYESIIALDTIGDIIADSVVTYFSNEE 563


>gi|258542142|ref|YP_003187575.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-01]
 gi|256633220|dbj|BAH99195.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-01]
 gi|256636279|dbj|BAI02248.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-03]
 gi|256639332|dbj|BAI05294.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-07]
 gi|256642388|dbj|BAI08343.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-22]
 gi|256645443|dbj|BAI11391.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-26]
 gi|256648496|dbj|BAI14437.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-32]
 gi|256651549|dbj|BAI17483.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654540|dbj|BAI20467.1| DNA repair protein RadC [Acetobacter pasteurianus IFO 3283-12]
          Length = 274

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 16/74 (21%)

Query: 543 TTHRKR-RKKAAYS---------PLDEINGIGPLRK------RLLLQSFGTVKMISRSSP 586
           T HRKR R++              L+ +  +G  RK      + L+  FG++  +  +  
Sbjct: 44  TGHRKRMRQRVLAQGAASLADYELLEMLLYVGIPRKDTKPLAKNLINVFGSLPAVLEAGE 103

Query: 587 ETLASIEGISKKIA 600
           E L  I G+++  A
Sbjct: 104 ENLRQISGVTRASA 117


>gi|256545365|ref|ZP_05472728.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit-helicase
           superfamily I member [Anaerococcus vaginalis ATCC 51170]
 gi|256398926|gb|EEU12540.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit-helicase
           superfamily I member [Anaerococcus vaginalis ATCC 51170]
          Length = 717

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 550 KKAAYSPLD--EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYN 605
           KKA  S L    I  IG     L+ + F   ++ ++   + E L SI+GI KK   KI  
Sbjct: 75  KKAIISYLSSGNIESIGKKTAELIYEKFKDDSIDVVFNET-EKLLSIQGIGKKKLEKIKE 133


>gi|153956079|ref|YP_001396844.1| LigA1 [Clostridium kluyveri DSM 555]
 gi|219856414|ref|YP_002473536.1| hypothetical protein CKR_3071 [Clostridium kluyveri NBRC 12016]
 gi|190359246|sp|A5N2X7|DNLJ_CLOK5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|254781297|sp|B9DWM9|DNLJ_CLOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146348937|gb|EDK35473.1| LigA1 [Clostridium kluyveri DSM 555]
 gi|219570138|dbj|BAH08122.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 663

 Score = 38.2 bits (87), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L  +F ++  ++ ++ E L  +E         I   F+ N 
Sbjct: 511 GIRNVGKQSAKILAGNFKSMDELAGAAYEQLIELEDFGPTTVPDILEFFNSNA 563


>gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816]
          Length = 694

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F GTV+ +     E ++      KK+  K+  
Sbjct: 10  GIPGVGEKTALKLLHEFGGTVESVLE-HAEEIS-----GKKLKEKVLE 51


>gi|254496522|ref|ZP_05109393.1| holliday junction DNA helicase [Legionella drancourtii LLAP12]
 gi|254354261|gb|EET12925.1| holliday junction DNA helicase [Legionella drancourtii LLAP12]
          Length = 199

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L       F  ++ I +     L  + GI KK A +
Sbjct: 67  KQERALFRALIKVNGVGPKMAIAILSSITPNEF--IQCIKQEKAAFLTKLPGIGKKTAER 124

Query: 603 I 603
           +
Sbjct: 125 L 125


>gi|171855257|sp|A3QIP9|Y3481_SHELP RecName: Full=UPF0758 protein Shew_3481
          Length = 225

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 572 LQSFGTVKMISRSSPETLASIEGISK 597
           L  FG ++ +  +S   L  I+GI  
Sbjct: 51  LTHFGGLRALFSASLSELCDIQGIGP 76


>gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
 gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
          Length = 866

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + G+G      L++ +G+V+ +       L +I+ IS KK+   +  +
Sbjct: 191 GVPGVGEKTAFKLIKEYGSVEAV-------LENIDNISGKKLKENLTEY 232


>gi|157738477|ref|YP_001491161.1| competence protein ComEA [Arcobacter butzleri RM4018]
 gi|315635337|ref|ZP_07890605.1| competence protein ComEA [Arcobacter butzleri JV22]
 gi|157700331|gb|ABV68491.1| HHH domain protein, putative competence protein ComEA [Arcobacter
           butzleri RM4018]
 gi|315480371|gb|EFU71036.1| competence protein ComEA [Arcobacter butzleri JV22]
          Length = 123

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           FG +  +  +S E L SI+GI +K A +I  +
Sbjct: 16  FGAI-NLQTASKEELMSIKGIGEKKAEQIMEY 46


>gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101]
 gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101]
          Length = 866

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + G+G      L++ +G+V+ +       L +I+ IS KK+   +  +
Sbjct: 191 GVPGVGEKTAFKLIKEYGSVEAV-------LENIDNISGKKLKENLTEY 232


>gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262]
 gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262]
          Length = 875

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 559 EINGIGPLRKRLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      LL  F GTV+ +     E ++      KK+  K+  
Sbjct: 191 GIPGVGEKTALKLLHEFGGTVESVLE-HAEEIS-----GKKLKEKVLE 232


>gi|127514409|ref|YP_001095606.1| DNA repair protein RadC [Shewanella loihica PV-4]
 gi|126639704|gb|ABO25347.1| DNA repair protein RadC [Shewanella loihica PV-4]
          Length = 233

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 572 LQSFGTVKMISRSSPETLASIEGISK 597
           L  FG ++ +  +S   L  I+GI  
Sbjct: 59  LTHFGGLRALFSASLSELCDIQGIGP 84


>gi|315636050|ref|ZP_07891309.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315479706|gb|EFU70380.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 288

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 18  IAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMIS 53
              +V+Y+G + NL+KR+K+Y     HT+ I + I 
Sbjct: 204 AENKVIYIGSSNNLKKRLKTYTSKTAHTNDIKNFIK 239


>gi|307130888|ref|YP_003882904.1| component of RuvABC resolvasome, regulatory subunit [Dickeya
           dadantii 3937]
 gi|306528417|gb|ADM98347.1| component of RuvABC resolvasome, regulatory subunit [Dickeya
           dadantii 3937]
          Length = 205

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            +++++ +  L ++NG+GP     +L     Q F  V  + R     L  + G+ KK A 
Sbjct: 65  NKQERSLFRELIKVNGVGPKLALAILSGMSAQQF--VSAVERQEINALVKLPGVGKKTAE 122

Query: 602 KI 603
           ++
Sbjct: 123 RL 124


>gi|271500732|ref|YP_003333757.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586]
 gi|270344287|gb|ACZ77052.1| Holliday junction DNA helicase RuvA [Dickeya dadantii Ech586]
          Length = 205

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            +++++ +  L ++NG+GP     +L     Q F  V  + R     L  + G+ KK A 
Sbjct: 65  NKQERSLFRELIKVNGVGPKLALAILSGMSAQQF--VSAVERQEINALVKLPGVGKKTAE 122

Query: 602 KI 603
           ++
Sbjct: 123 RL 124


>gi|289581729|ref|YP_003480195.1| DNA mismatch repair protein MutS [Natrialba magadii ATCC 43099]
 gi|289531282|gb|ADD05633.1| DNA mismatch repair protein MutS domain protein [Natrialba magadii
           ATCC 43099]
          Length = 739

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVK----MISRSSPETLASIEGISKKIACKI 603
           L+ I G+G    R L      +      +      T+AS  GI++  A +I
Sbjct: 25  LESIPGVGEKTARAL----SDLDDPERALRAGDVATIASAPGITQGRAARI 71


>gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
 gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
          Length = 866

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + G+G      L++ +G+V+ +       L +I+ IS KK+   +  +
Sbjct: 191 GVPGVGEKTAFKLIKEYGSVEAV-------LENIDNISGKKLKENLTEY 232


>gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
 gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
          Length = 866

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + G+G      L++ +G+V+ +       L +I+ IS KK+   +  +
Sbjct: 191 GVPGVGEKTAFKLIKEYGSVEAV-------LENIDNISGKKLKENLTEY 232


>gi|219849593|ref|YP_002464026.1| helicase, RecD/TraA family [Chloroflexus aggregans DSM 9485]
 gi|219543852|gb|ACL25590.1| helicase, RecD/TraA family [Chloroflexus aggregans DSM 9485]
          Length = 724

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           ++   S L  I G+GP   + + ++FG  T+ ++ R  PE L+ + G+ +K A  I   +
Sbjct: 82  RRYLGSGL--IKGVGPAMAKRITETFGKYTLDVLDR-EPERLSEVPGLGRKKAALIAAAW 138

Query: 608 HKNT 611
            +  
Sbjct: 139 REQQ 142


>gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
 gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
          Length = 866

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + G+G      L++ +G+V+ +       L +I+ IS KK+   +  +
Sbjct: 191 GVPGVGEKTAFKLIKEYGSVEAV-------LENIDNISGKKLKENLTEY 232


>gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13]
 gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13]
          Length = 866

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + G+G      L++ +G+V+ +       L +I+ IS KK+   +  +
Sbjct: 191 GVPGVGEKTAFKLIKEYGSVEAV-------LENIDNISGKKLKENLTEY 232


>gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
 gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
          Length = 879

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG+++ I  
Sbjct: 196 DNIPGVTKIGEKTGLKLLHEFGSLEGIYE 224


>gi|322831681|ref|YP_004211708.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
 gi|321166882|gb|ADW72581.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
          Length = 352

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 29/80 (36%)

Query: 556 PLDEINGIGPLRKR-------------------LLLQSFGTVKMI----------SRSSP 586
           PL +I G+G +  +                    LL+ FG    +             SP
Sbjct: 177 PLSKIPGVGKVTAQRLQEQGLITCGDVQRYDLAKLLKRFGKFGRVLWERCQGIDEREISP 236

Query: 587 ETLASIEGISKKIACKIYNH 606
           E L    G+ + +A  I++ 
Sbjct: 237 ERLRKSVGVERTLAEDIHSW 256


>gi|296393859|ref|YP_003658743.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM
           44985]
 gi|296181006|gb|ADG97912.1| Holliday junction DNA helicase RuvA [Segniliparus rotundus DSM
           44985]
          Length = 199

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 11/76 (14%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTV-------KMISRSSPETLASIEGISKKIA 600
           R  +  +  L  ++G+GP     +L    +V       + I       L  + G+ K++A
Sbjct: 65  RETRDLFDVLRTVSGVGPKLAMAVL----SVLEPVALRRAIGEGDLGALTKVPGVGKRVA 120

Query: 601 CKIYNHFHKNTSHTPT 616
            ++     +     P+
Sbjct: 121 ERLALELKEKIGGPPS 136


>gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 856

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            I GIG  R   L+Q +G+++ +       L       +KIA  + +
Sbjct: 192 GIPGIGSKRASALIQQYGSLENLYE-HINEL------PQKIASSLKD 231


>gi|261207462|ref|ZP_05922148.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
 gi|289565873|ref|ZP_06446314.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
 gi|294618097|ref|ZP_06697694.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
 gi|260078353|gb|EEW66058.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
 gi|289162333|gb|EFD10192.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
 gi|291595669|gb|EFF26965.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
          Length = 679

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG ++ +S+S  E++ +++ I   IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLETLSKSDYESIIALDTIGDIIADSVVTYFSNEE 568


>gi|237796430|ref|YP_002863982.1| putative comE operon protein 1 [Clostridium botulinum Ba4 str. 657]
 gi|229261260|gb|ACQ52293.1| putative comE operon protein 1 [Clostridium botulinum Ba4 str. 657]
          Length = 202

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  I GIG +  + +L      GT K       E L +I  I  K   KI  
Sbjct: 146 ASKEELKSIPGIGDVTAQKILDYREKQGTFKN-----FEDLKAIGRIGDKTIEKIKE 197



 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 583 RSSPETLASIEGISKKIACKIYNH 606
            +S E L SI GI    A KI ++
Sbjct: 145 SASKEELKSIPGIGDVTAQKILDY 168


>gi|226950402|ref|YP_002805493.1| putative comE operon protein 1 [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844593|gb|ACO87259.1| putative comE operon protein 1 [Clostridium botulinum A2 str.
           Kyoto]
 gi|322807301|emb|CBZ04875.1| late competence protein ComEA, DNA receptor [Clostridium botulinum
           H04402 065]
          Length = 202

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  I GIG +  + +L      GT K       E L +I  I  K   KI  
Sbjct: 146 ASKEELKSIPGIGDVTAQKILDYREKQGTFKN-----FEDLKAIGRIGDKTIEKIKE 197



 Score = 37.0 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 583 RSSPETLASIEGISKKIACKIYNH 606
            +S E L SI GI    A KI ++
Sbjct: 145 SASKEELKSIPGIGDVTAQKILDY 168


>gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
 gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
          Length = 866

 Score = 38.2 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + G+G      L++ +G+V+ +       L +I+ IS KK+   +  +
Sbjct: 191 GVPGVGEKTAFKLIKEYGSVEAV-------LENIDNISGKKLKENLTEY 232


>gi|332297848|ref|YP_004439770.1| DNA ligase [Treponema brennaborense DSM 12168]
 gi|332180951|gb|AEE16639.1| DNA ligase [Treponema brennaborense DSM 12168]
          Length = 646

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 559 EINGIGPLRKRLLLQ-S--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +I GIG      L+       T++ +  ++   +A + G     A  +     +N + 
Sbjct: 494 DIEGIGETLVEKLVASHPDMDTLEKLLGAAEAEIALVNGFGDITAQALVQGLAENAAE 551


>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
 gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
          Length = 830

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           D I G   IG      L++ +G+++ +     + L  ++     +  KI +H
Sbjct: 188 DNIPGVKGIGEKTAAKLIREWGSLENL----LKHLEQVK--PASVREKILSH 233


>gi|311110548|ref|ZP_07711945.1| competence protein CelA [Lactobacillus gasseri MV-22]
 gi|311065702|gb|EFQ46042.1| competence protein CelA [Lactobacillus gasseri MV-22]
          Length = 230

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++NG+G  +   ++      G  K I     E L  + GI +K   K+ +  
Sbjct: 180 LQKLNGVGQKKAEQIIAYRDQNGGFKQI-----EDLTKVTGIGEKTFEKLKDQL 228


>gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.]
          Length = 912

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            + GIGP     L+++FG++K +   + +++  
Sbjct: 210 GVPGIGPKTALDLIKTFGSMKNLYD-NIDSITK 241


>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
          Length = 830

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           D I G   IG      L++ +G+++ +     + L  ++     +  KI +H
Sbjct: 188 DNIPGVKGIGEKTAAKLIREWGSLENL----LKHLEQVK--PASVREKILSH 233


>gi|116251828|ref|YP_767666.1| DNA repair protein RadC [Rhizobium leguminosarum bv. viciae 3841]
 gi|226736628|sp|Q1MHK3|Y2068_RHIL3 RecName: Full=UPF0758 protein RL2068
 gi|115256476|emb|CAK07560.1| putative DNA repair protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 275

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 18/32 (56%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + L++ FG++  +  +    L  ++G+ + +A
Sbjct: 99  KALIERFGSLAGVFGAPQALLMEVKGVGEAVA 130


>gi|47777360|gb|AAT37994.1| unknown protein [Oryza sativa Japonica Group]
          Length = 292

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            L  I GI       L Q+ G+++ I+++S + +     +S   A  I   F 
Sbjct: 229 VLTSIPGIDNHDANALAQAIGSIEAIAKASKKFILENTDLSTDKAETIVRFFR 281


>gi|11345434|gb|AAG34706.1|AF319938_1 competence factor ComEA [Thermus thermophilus HB27]
          Length = 298

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 583 RSSPETLASIEGISKKIACKIYN 605
            +S E L ++ GI   +A +I  
Sbjct: 246 EASLEELMALPGIGPVLARRIVE 268


>gi|46199904|ref|YP_005571.1| competence protein/comEA-related protein [Thermus thermophilus
           HB27]
 gi|55981936|ref|YP_145233.1| competence protein ComEA-like protein [Thermus thermophilus HB8]
 gi|46197531|gb|AAS81944.1| competence protein/comEA-related protein [Thermus thermophilus
           HB27]
 gi|55773349|dbj|BAD71790.1| competence protein ComEA-related protein [Thermus thermophilus HB8]
          Length = 75

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 583 RSSPETLASIEGISKKIACKIYN 605
            +S E L ++ GI   +A +I  
Sbjct: 23  EASLEELMALPGIGPVLARRIVE 45


>gi|330963250|gb|EGH63510.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 787

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|330879795|gb|EGH13944.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 281

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 177 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 225


>gi|330879146|gb|EGH13295.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 787

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|289649545|ref|ZP_06480888.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 787

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|289626390|ref|ZP_06459344.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330866315|gb|EGH01024.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 787

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|237799321|ref|ZP_04587782.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022177|gb|EGI02234.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 703

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I  +G    ++L +S  ++  + ++ PE L  +  +  ++A +I++ F
Sbjct: 535 GIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFF 583


>gi|257053513|ref|YP_003131346.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
 gi|256692276|gb|ACV12613.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
          Length = 580

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYN 605
            L  + G+GP     L ++ G  T+  +  ++    + ++ G   K    I +
Sbjct: 94  ALTSVEGVGPKTVGTLYEALGIQTLDDLEAAAEAGEIQNVSGFGAKTEQNILD 146


>gi|254166887|ref|ZP_04873741.1| Anticodon-binding domain family [Aciduliprofundum boonei T469]
 gi|289596522|ref|YP_003483218.1| Protein of unknown function DUF835 [Aciduliprofundum boonei T469]
 gi|197624497|gb|EDY37058.1| Anticodon-binding domain family [Aciduliprofundum boonei T469]
 gi|289534309|gb|ADD08656.1| Protein of unknown function DUF835 [Aciduliprofundum boonei T469]
          Length = 1007

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 559 EINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I GI   R  LL +  +G++  +  + PE +A   G+  K+  ++ ++ 
Sbjct: 768 SIPGIDDYRAELLFKMGYGSIYELMEAEPEQIAEATGMPLKLVNELIDYL 817


>gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
 gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
          Length = 866

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + G+G      L++ +G+V+ +       L +I+ IS KK+   +  +
Sbjct: 191 GVPGVGEKTAFKLIKEYGSVEAV-------LENIDNISGKKLKENLTEY 232


>gi|168179468|ref|ZP_02614132.1| putative comE operon protein 1 [Clostridium botulinum NCTC 2916]
 gi|168181663|ref|ZP_02616327.1| putative comE operon protein 1 [Clostridium botulinum Bf]
 gi|182669790|gb|EDT81766.1| putative comE operon protein 1 [Clostridium botulinum NCTC 2916]
 gi|182675190|gb|EDT87151.1| putative comE operon protein 1 [Clostridium botulinum Bf]
          Length = 202

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  I GIG +  + +L      GT K       E L +I  I  K   KI  
Sbjct: 146 ASKEELKSIPGIGDVTAQKILDYREKQGTFKN-----FEDLKAIGRIGDKTIEKIKE 197



 Score = 37.0 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 583 RSSPETLASIEGISKKIACKIYNH 606
            +S E L SI GI    A KI ++
Sbjct: 145 SASKEELKSIPGIGDVTAQKILDY 168


>gi|293569137|ref|ZP_06680444.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
 gi|291588184|gb|EFF20025.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
          Length = 679

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG ++ +S+S  E++ +++ I   IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLETLSKSDYESIIALDTIGDIIADSVVTYFSNEE 568


>gi|257878462|ref|ZP_05658115.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
 gi|257889341|ref|ZP_05668994.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
 gi|257894353|ref|ZP_05674006.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
 gi|258616016|ref|ZP_05713786.1| DNA ligase, NAD-dependent [Enterococcus faecium DO]
 gi|257812690|gb|EEV41448.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
 gi|257825701|gb|EEV52327.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
 gi|257830732|gb|EEV57339.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
          Length = 678

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG ++ +S+S  E++ +++ I   IA  +  +F    
Sbjct: 515 GIRHVGAKAAKILAEHFGDLETLSKSDYESIIALDTIGDIIADSVVTYFSNEE 567


>gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1]
 gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1]
          Length = 912

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IG  +   +   + +++ I   + + L +I+GI   +   + N
Sbjct: 190 DGIPGVTKIGEKKALAIFSQYDSLEKIYD-NIDNLKNIDGIGPSLIKNLIN 239


>gi|254383856|ref|ZP_04999203.1| DNA ligase [Streptomyces sp. Mg1]
 gi|194342748|gb|EDX23714.1| DNA ligase [Streptomyces sp. Mg1]
          Length = 696

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           G G    R + + F T++ I R+    +  +EGI  + A  I  
Sbjct: 535 GTGRSMSRRIARHFVTMEAIRRADAAEMQDVEGIGPEKAPVIVE 578


>gi|182623977|ref|ZP_02951765.1| putative comE operon protein 1 [Clostridium perfringens D str.
           JGS1721]
 gi|177910870|gb|EDT73224.1| putative comE operon protein 1 [Clostridium perfringens D str.
           JGS1721]
          Length = 256

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  +NGIG  + + ++      G  K     S + + ++ GI +K   KI +
Sbjct: 200 ASKETLMTLNGIGESKAQAIIDYRDEIGGFK-----SVDDITNVSGIGEKTLEKIKD 251


>gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
 gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
          Length = 866

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + G+G      L++ +G+V+ +       L +I+ IS KK+   +  +
Sbjct: 191 GVPGVGEKTAFKLIKEYGSVEAV-------LENIDNISGKKLKENLTEY 232


>gi|86610182|ref|YP_478944.1| phospholipase D/competence protein ComEA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558724|gb|ABD03681.1| phospholipase D/competence protein ComEA helix-hairpin-helix domain
           protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 591

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L+++ GIGP   + ++++  F ++        E L  + GI      ++ +
Sbjct: 540 ATAAELEQLPGIGPALAQRIIEARPFSSL--------EDLQRVNGIGPARIEQLRD 587


>gi|114330310|ref|YP_746532.1| Holliday junction DNA helicase RuvA [Nitrosomonas eutropha C91]
 gi|122314644|sp|Q0AJA4|RUVA_NITEC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|114307324|gb|ABI58567.1| Holliday junction DNA helicase subunit RuvA [Nitrosomonas eutropha
           C91]
          Length = 194

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPET----LASIEGISKKIACKIYN 605
           +A +  L +I+GIG      +L   G +V  + ++        L  I GI KK A ++  
Sbjct: 69  RALFRQLTKISGIGARTGLAILS--GLSVTDLHQAVVSQDSIRLTKIPGIGKKTAERLLL 126

Query: 606 HFH 608
              
Sbjct: 127 ELR 129


>gi|69246831|ref|ZP_00604140.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
 gi|260560049|ref|ZP_05832227.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
 gi|293559999|ref|ZP_06676507.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
 gi|294621040|ref|ZP_06700232.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
 gi|314937827|ref|ZP_07845144.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
 gi|314941627|ref|ZP_07848507.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
 gi|314948874|ref|ZP_07852243.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
 gi|314951008|ref|ZP_07854075.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
 gi|314993009|ref|ZP_07858405.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
 gi|314996456|ref|ZP_07861499.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
 gi|68195064|gb|EAN09526.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
 gi|260073884|gb|EEW62208.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
 gi|291599354|gb|EFF30379.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
 gi|291606087|gb|EFF35513.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
 gi|313589438|gb|EFR68283.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
 gi|313592532|gb|EFR71377.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
 gi|313596863|gb|EFR75708.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
 gi|313599518|gb|EFR78361.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
 gi|313642858|gb|EFS07438.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
 gi|313644664|gb|EFS09244.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
          Length = 679

 Score = 38.2 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG ++ +S+S  E++ +++ I   IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLETLSKSDYESIIALDTIGDIIADSVVTYFSNEE 568


>gi|226359985|ref|YP_002777763.1| 5'-3' exonuclease [Rhodococcus opacus B4]
 gi|226238470|dbj|BAH48818.1| putative 5'-3' exonuclease [Rhodococcus opacus B4]
          Length = 321

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 6/31 (19%), Positives = 15/31 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           L  + GIG      L+  +G++  +  ++ +
Sbjct: 209 LPGVKGIGEKTASSLIMQYGSLAALRAAAVD 239


>gi|111017852|ref|YP_700824.1| DNA polymerase I [Rhodococcus jostii RHA1]
 gi|110817382|gb|ABG92666.1| probable DNA polymerase I [Rhodococcus jostii RHA1]
          Length = 318

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 6/31 (19%), Positives = 15/31 (48%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE 587
           L  + GIG      L+  +G++  +  ++ +
Sbjct: 206 LPGVKGIGEKTASSLIMQYGSLAALRAAAVD 236


>gi|38640859|ref|NP_943634.1| putative endonuclease [Candida parapsilosis]
 gi|38564092|emb|CAE54597.1| putative endonuclease [Candida parapsilosis]
 gi|183229565|gb|ACC60279.1| hypothetical protein [Candida parapsilosis]
          Length = 373

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 19/99 (19%)

Query: 5   QMPECPGVYQMLDIAGRVLYVGKA--YNLQKRIKSYMHSNNHTHRITHMISQINN----- 57
           ++    G+Y +++   R  Y+G A   NL +R  +++ +NN+  + + ++ +  N     
Sbjct: 83  ELKSKSGIYIIINKISRNYYIGSAQTNNLYRRFHNHLLTNNN--KGSKIVQRAVNKDGLN 140

Query: 58  ------IRF---TVT-CTEVEALLLEANMIKRLKPRFNI 86
                 I +    VT   + E L LE + I  L P +NI
Sbjct: 141 NFVFAIIEYYPFIVTNDNKQELLALETSYIGLLLPIYNI 179


>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 923

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKIYNHFHKNTS 612
            + G+G    + LL   G +  +   + + +A + G   SK +A K+ +  +K  +
Sbjct: 192 GVPGVGEKTAKALLTGIGGLDALYD-NLDDIAPL-GFRGSKTMAKKLLD--NKEAA 243


>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 933

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI--YNHFHKNTSH 613
            + G+G    + LLQ  G++K I       L  +  +S + A  +      +K+ + 
Sbjct: 192 GVPGVGEKTAQALLQGIGSLKQIYS----DLDKVATLSFRGAKTMGAKLELNKDQAD 244


>gi|325111069|ref|YP_004272137.1| PHP domain protein [Planctomyces brasiliensis DSM 5305]
 gi|324971337|gb|ADY62115.1| PHP domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 584

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 560 INGIGPLRKRLLL--QSFGTVKMISRSSPE-TLASIEGISKKIACKIYNHF-HKNTSHT 614
           I G+GP +  +L       ++  +  ++    +A  +G  KK    I     H   S +
Sbjct: 98  IPGLGPKKVAILFYELHLKSLDELKHAAENGVIAQKKGFGKKTEQLILEGLEHLEQSGS 156


>gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 888

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 7/51 (13%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  I G+G       +  FG+   +     E +  ++G   K    + +H 
Sbjct: 187 LPGIPGVGEKTAAKWINQFGSFAEL----VERVEEVKG---KAGQNLRDHL 230


>gi|257465859|ref|ZP_05630170.1| DNA repair protein radC [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917016|ref|ZP_07913256.1| DNA repair protein radC [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690891|gb|EFS27726.1| DNA repair protein radC [Fusobacterium gonidiaformans ATCC 25563]
          Length = 227

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL  FGT+  + ++  E L SI+GI +     I  HF
Sbjct: 49  KELLHRFGTLSAVCKAKTEELQSIKGIKENT--SILLHF 85


>gi|228471297|ref|ZP_04056103.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3]
 gi|228306939|gb|EEK16037.1| holliday junction DNA helicase RuvA [Porphyromonas uenonis 60-3]
          Length = 202

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET------LASIEGISKKIACKIYN 605
           A ++ L  ++G+GP   R++L    ++  +  +          L  ++GI  K A +I  
Sbjct: 73  ALFAKLITVSGVGPATARVILS---SLAPLELAEVIESGDDKRLKMVKGIGLKTAQRIIV 129

Query: 606 HFHKNTSHTPT 616
                   T T
Sbjct: 130 DLKGKLPETLT 140


>gi|48477813|ref|YP_023519.1| DNA repair and recombination protein RadA [Picrophilus torridus DSM
           9790]
 gi|73913727|sp|Q6L126|RADA_PICTO RecName: Full=DNA repair and recombination protein radA
 gi|48430461|gb|AAT43326.1| DNA repair and recombination protein radA [Picrophilus torridus DSM
           9790]
          Length = 323

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +++ G+G      L +S +  +  I+ +SP+ LA I GI++  A KI N   K
Sbjct: 14  EDLPGVGDATAEKLRESGYDDIMTIAVASPKDLAEISGIAEGAAIKIINAARK 66


>gi|327310021|ref|YP_004336918.1| ATP-dependent, DNA binding helicase [Thermoproteus uzoniensis
           768-20]
 gi|326946500|gb|AEA11606.1| ATP-dependent, DNA binding helicase [Thermoproteus uzoniensis
           768-20]
          Length = 716

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 562 GIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           G+G +R R L Q+ + T+  ++R+ P  +A + G  +++A  +  
Sbjct: 656 GVGRVRARTLYQAGYRTLADVARAKPADIARLPGFGERLAASVVE 700


>gi|290968852|ref|ZP_06560389.1| comEA protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781148|gb|EFD93739.1| comEA protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 178

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I+ +S E LA++ GI    A KI  + +++  
Sbjct: 119 NINEASAEKLATLPGIGMATAKKIVKYRNQHGP 151


>gi|256845195|ref|ZP_05550653.1| DNA repair protein radC [Fusobacterium sp. 3_1_36A2]
 gi|294785500|ref|ZP_06750788.1| DNA repair protein RadC [Fusobacterium sp. 3_1_27]
 gi|256718754|gb|EEU32309.1| DNA repair protein radC [Fusobacterium sp. 3_1_36A2]
 gi|294487214|gb|EFG34576.1| DNA repair protein RadC [Fusobacterium sp. 3_1_27]
          Length = 232

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598
           + LL  F ++  I ++  + L++I+G+ K 
Sbjct: 49  KELLNKFKSLDNIFKADFDKLSAIDGLGKN 78


>gi|168212843|ref|ZP_02638468.1| putative comE operon protein 1 [Clostridium perfringens CPE str.
           F4969]
 gi|170715529|gb|EDT27711.1| putative comE operon protein 1 [Clostridium perfringens CPE str.
           F4969]
          Length = 254

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  +NGIG  + + ++      G  K     S + + ++ GI +K   KI +
Sbjct: 198 ASKETLMTLNGIGESKAQAIIDYRDEIGGFK-----SVDDITNVSGIGEKTLEKIKD 249


>gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
 gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
          Length = 875

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            + GIG      L++ + +++++     E + +I+G  KK+   ++ +
Sbjct: 193 GVPGIGEKTAFKLIKEYKSIEIV----LENIENIKG--KKLKENLHEY 234


>gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
 gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
          Length = 898

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 14/56 (25%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           D I G   IG      +L  FG+V+           +++ IS K+  KI N    N
Sbjct: 197 DNIPGVSGIGEKTAAKILNEFGSVEN----------ALKNIS-KLPEKIRNAIENN 241


>gi|152976757|ref|YP_001376274.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025509|gb|ABS23279.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cytotoxicus NVH 391-98]
          Length = 200

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L+ I GIGP +   +++     G  + I     E L  I+GI +K   K+ +
Sbjct: 144 ASKEQLENITGIGPRKAEAIIKYREEHGAFQKI-----EDLLEIDGIGEKSLEKMKD 195


>gi|325967813|ref|YP_004244005.1| ERCC4 domain protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707016|gb|ADY00503.1| ERCC4 domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 260

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 557 LDEINGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKI 599
           L  + GIGP R   LL++FGT +  ++     T   ++ I++ I
Sbjct: 158 LSSLPGIGPKRAEALLRAFGTPLDALNNLGQWT-RKVDNINENI 200


>gi|317402956|gb|EFV83496.1| DNA repair protein radC [Achromobacter xylosoxidans C54]
          Length = 225

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            LL  F  ++ +  ++PE L ++ G+    A
Sbjct: 50  QLLDRFHGLRGLLGATPEELQALPGLGTAKA 80


>gi|311277441|ref|YP_003939672.1| DNA repair protein RadC [Enterobacter cloacae SCF1]
 gi|308746636|gb|ADO46388.1| DNA repair protein RadC [Enterobacter cloacae SCF1]
          Length = 221

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGIS-------KKIACKIYNHF 607
           LL  FG++  +  +  + L  +EGI        K IA      F
Sbjct: 47  LLHRFGSLYSLLSAPEKELMRVEGIGIAKYAQLKGIAELARRFF 90


>gi|303245835|ref|ZP_07332117.1| DNA repair protein RadC [Desulfovibrio fructosovorans JJ]
 gi|302492618|gb|EFL52486.1| DNA repair protein RadC [Desulfovibrio fructosovorans JJ]
          Length = 228

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 544 THRKRRKKAAYS---------PLDEINGIGPLRK------RLLLQSFGTVKMISRSSPET 588
            HR+R K    S          L+ + G   +R+      + LL  FG+++    +  E 
Sbjct: 12  GHRRRLKDRLMSDPRALADYEVLELVLGYVNVRRDNKPLAKELLSRFGSLRGTLLARMEE 71

Query: 589 LASIEGISK 597
           L  + G   
Sbjct: 72  LRDVPGFGP 80


>gi|261378519|ref|ZP_05983092.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685]
 gi|269145069|gb|EEZ71487.1| holliday junction DNA helicase RuvA [Neisseria cinerea ATCC 14685]
          Length = 194

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQRL--RDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      +    +L  R++AH    FA    RK      +  L +++GIG      +L
Sbjct: 36  YNLPPLGETVQVFTQLVVREDAHLLFGFATAEERK-----TFRQLIKVSGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +  T   ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-TADELAQAVAEEDVKRLSSAPGIGKKTAER 123


>gi|325661913|ref|ZP_08150533.1| hypothetical protein HMPREF0490_01271 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471765|gb|EGC74983.1| hypothetical protein HMPREF0490_01271 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 205

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIG  +   +L    +       S E +  IEGI   +  KI  
Sbjct: 150 ATKEELMTLPGIGEAKADSILTYRESAGGFQ--SIEQIKEIEGIKDGVFEKIKE 201


>gi|297526610|ref|YP_003668634.1| DEAD/DEAH box helicase domain protein [Staphylothermus hellenicus
           DSM 12710]
 gi|297255526|gb|ADI31735.1| DEAD/DEAH box helicase domain protein [Staphylothermus hellenicus
           DSM 12710]
          Length = 722

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L E+ GIG +R R L+++   ++K +  + P  + S+ G   ++   +Y    +
Sbjct: 665 ELVELQGIGRVRARTLIKNGIKSLKDLVNTPPSKIESLPGFGPRLVRSLYEQLRE 719


>gi|218888170|ref|YP_002437491.1| DNA repair protein RadC [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218759124|gb|ACL10023.1| DNA repair protein RadC [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 225

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           + LL  FG+++ +  + P  L  ++G    +
Sbjct: 49  KELLSRFGSLRGVLDARPSELMGVKGFGPAM 79


>gi|157736879|ref|YP_001489562.1| hypothetical protein Abu_0628 [Arcobacter butzleri RM4018]
 gi|157698733|gb|ABV66893.1| hypothetical protein Abu_0628 [Arcobacter butzleri RM4018]
          Length = 365

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 18  IAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMIS 53
              +V+Y+G + NL+KR+K+Y     HT+ I + I 
Sbjct: 281 AENKVIYIGSSNNLKKRLKTYTSKTAHTNDIKNFIK 316


>gi|126661491|ref|ZP_01732543.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126617218|gb|EAZ88035.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 259

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
           D I G   IG      LL  +G+++ I       + +I+G ++K
Sbjct: 206 DNIPGVRGIGEKTAVKLLSEYGSLEEIYN----NIENIKGANQK 245


>gi|85859377|ref|YP_461579.1| ComEA family DNA-binding protein [Syntrophus aciditrophicus SB]
 gi|85722468|gb|ABC77411.1| DNA-binding protein, ComEA family [Syntrophus aciditrophicus SB]
          Length = 204

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 6/35 (17%)

Query: 581 ISRSSPETLASIEGISKKIACKIYNH------FHK 609
           ++ +S   L  + GI +K A KI         FHK
Sbjct: 143 VNSASMAELELVPGIGEKTAQKIIEARNQKGKFHK 177


>gi|88860459|ref|ZP_01135097.1| hypothetical protein PTD2_15582 [Pseudoalteromonas tunicata D2]
 gi|88817657|gb|EAR27474.1| hypothetical protein PTD2_15582 [Pseudoalteromonas tunicata D2]
          Length = 101

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 557 LDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKI 603
           L  + G+G  +   ++     FG       +S   L +++GI  K+  K+
Sbjct: 51  LQSLPGLGKTKAAAIIAYREQFGEF-----ASLADLKNVKGIGDKVIAKL 95


>gi|67473395|ref|XP_652464.1| DNA excision repair protein [Entamoeba histolytica HM-1:IMSS]
 gi|56469331|gb|EAL47090.1| DNA excision repair protein, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 238

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
              + L  I GI       LL  F T+K +     + L   + I  K    I+  FH
Sbjct: 152 QIINALSMIKGINSQNAYDLLMKFNTLKRLGVVDKDELKKSKNIGPKKVESIWRVFH 208


>gi|34762350|ref|ZP_00143353.1| DNA repair protein radC [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27888004|gb|EAA25068.1| DNA repair protein radC [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 232

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598
           + LL  F ++  I ++  + L++I+G+ K 
Sbjct: 49  KELLNKFKSLDNIFKADFDKLSAIDGLGKN 78


>gi|325968380|ref|YP_004244572.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
           768-28]
 gi|323707583|gb|ADY01070.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
           768-28]
          Length = 358

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 558 DEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
           +EI G+G +  + L ++ + T + ++ +S + LA I G S+  A +I     K    TP
Sbjct: 53  EEIEGVGRVTAQKLREAGYNTARDVAFASVKELADILG-SEDRAKQIIAAAQKLIGLTP 110


>gi|302871177|ref|YP_003839813.1| DNA repair protein RadC [Caldicellulosiruptor obsidiansis OB47]
 gi|302574036|gb|ADL41827.1| DNA repair protein RadC [Caldicellulosiruptor obsidiansis OB47]
          Length = 230

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            L+ +FG++  +  + P+ L  + G+ +  A  I
Sbjct: 50  RLISTFGSISNVFEAHPKDLQKVNGVGENSAILI 83


>gi|257452349|ref|ZP_05617648.1| DNA repair protein radC [Fusobacterium sp. 3_1_5R]
 gi|317058892|ref|ZP_07923377.1| DNA repair protein radC [Fusobacterium sp. 3_1_5R]
 gi|313684568|gb|EFS21403.1| DNA repair protein radC [Fusobacterium sp. 3_1_5R]
          Length = 227

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + LL  FGT+  + ++  E L SI+GI +     I  HF
Sbjct: 49  KELLHRFGTLSAVCKAKTEELQSIKGIKENT--SILLHF 85


>gi|251789856|ref|YP_003004577.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591]
 gi|247538477|gb|ACT07098.1| Holliday junction DNA helicase RuvA [Dickeya zeae Ech1591]
          Length = 205

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A 
Sbjct: 65  NKQERALFRELIKVNGVGPKLALAILSGMSAQQF--VSAVERQEINTLVKLPGVGKKTAE 122

Query: 602 KI 603
           ++
Sbjct: 123 RL 124


>gi|116629810|ref|YP_814982.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           gasseri ATCC 33323]
 gi|116095392|gb|ABJ60544.1| DNA uptake protein related DNA-binding protein [Lactobacillus
           gasseri ATCC 33323]
          Length = 246

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L ++NG+G  +   ++      G  K I     E L  + GI +K   K+ +  
Sbjct: 196 LQKLNGVGQKKAEQIIAYRDQNGGFKQI-----EDLTKVTGIGEKTFEKLKDQL 244


>gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
          Length = 944

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IGP     LL  +G+++ I  
Sbjct: 214 DNIPGAKGIGPKTAISLLDQYGSLQNIYN 242


>gi|303247976|ref|ZP_07334243.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302490700|gb|EFL50603.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 1070

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 14/59 (23%)

Query: 556 PLDEING----IGPLRKRL------LLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           PLDE+ G    +GP   +       +L  FG+ + ++  +  E +  +   S  +A  +
Sbjct: 337 PLDELAGEVMGVGPKTAKAHGLVARMLARFGSELTVLREAPAEEIGRV---STALAEAV 392


>gi|223986042|ref|ZP_03636071.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM
           12042]
 gi|223961992|gb|EEF66475.1| hypothetical protein HOLDEFILI_03377 [Holdemania filiformis DSM
           12042]
          Length = 193

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 509 KFFVKKGEALVLNMRDPILYFIQRLR-DEAHRFAITTHRKRRKKAAYSPLDEINGIGPLR 567
           K F  + EA+ LN    +  + Q +R DE   F++       ++  +  L  + G+GP  
Sbjct: 27  KVFFSRPEAVRLNQEVRVFTY-QHVREDE---FSLFGFLSMEEQDLFVKLISVKGLGPKT 82

Query: 568 KRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACKI 603
              +L +  T +     I +     L  + GI  K A +I
Sbjct: 83  AMNMLAA-ATYQQMVQMIEQGDVAALKKMPGIGAKTASQI 121


>gi|218264168|ref|ZP_03478052.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222214|gb|EEC94864.1| hypothetical protein PRABACTJOHN_03742 [Parabacteroides johnsonii
           DSM 18315]
          Length = 197

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 557 LDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKIY 604
           L  + G+GP   R++L S  +    V+ I+     +L +++GI  K A +I 
Sbjct: 74  LTTVPGVGPNTARMILSSL-SPSELVRAIADKDENSLVAVKGIGTKTAQRIL 124


>gi|329765338|ref|ZP_08256918.1| Hypothetical protein Nlim_0681 [Candidatus Nitrosoarchaeum limnia
          SFB1]
 gi|329138244|gb|EGG42500.1| Hypothetical protein Nlim_0681 [Candidatus Nitrosoarchaeum limnia
          SFB1]
          Length = 97

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 14/78 (17%)

Query: 5  QMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTC 64
          ++P+  GVY M   + ++L++G A N++        ++         IS+   +R+  T 
Sbjct: 21 KIPQSAGVYMMH-ASMKILFIGGAENIK--------TSIQDKEEEQCISKATRVRYMQTS 71

Query: 65 T-EVEALLLEANMIKRLK 81
          + E  A     ++IK  +
Sbjct: 72 SYEKVA----EDLIKDYQ 85


>gi|296269792|ref|YP_003652424.1| 5'-3' exonuclease [Thermobispora bispora DSM 43833]
 gi|296092579|gb|ADG88531.1| 5'-3' exonuclease [Thermobispora bispora DSM 43833]
          Length = 314

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588
           L  + GIG      L+ +FGT+  +  +  + 
Sbjct: 208 LPGVPGIGERTAAALISTFGTLSALRAA-LDE 238


>gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium]
          Length = 803

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISR 583
           D I GI   G      L+  FG++  I +
Sbjct: 204 DNIPGIVGIGEKTATDLITQFGSIDDIYK 232


>gi|168333618|ref|ZP_02691878.1| helicase, RecD/TraA family protein [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 740

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +K   S L  I+G+G    + ++  FG  T ++I +  P  L  I GISK+ A  I   +
Sbjct: 79  RKILSSGL--ISGVGEKLAKKIVDKFGEKTFEIIDQ-EPSKLTQIPGISKEKAYSISEQY 135

Query: 608 HKN 610
              
Sbjct: 136 KSE 138


>gi|56475876|ref|YP_157465.1| DNA repair protein RadC [Aromatoleum aromaticum EbN1]
 gi|81677578|sp|Q5P7Z7|Y442_AZOSE RecName: Full=UPF0758 protein AZOSEA04420
 gi|56311919|emb|CAI06564.1| DNA repair protein, radC [Aromatoleum aromaticum EbN1]
          Length = 225

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           R LLQ FG++  +  +S    ++I G+   +A   Y    
Sbjct: 48  RDLLQQFGSLTRLCAASAAEFSAIPGMG--LAK--YAQLQ 83


>gi|317124911|ref|YP_004099023.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Intrasporangium calvum DSM 43043]
 gi|315588999|gb|ADU48296.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Intrasporangium calvum DSM 43043]
          Length = 319

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 6/28 (21%), Positives = 15/28 (53%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS 584
           L  + GIG      L+ ++G+++ +  +
Sbjct: 214 LPGVAGIGEKTAAKLITTYGSLEALRAA 241


>gi|331085779|ref|ZP_08334862.1| hypothetical protein HMPREF0987_01165 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406702|gb|EGG86207.1| hypothetical protein HMPREF0987_01165 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 226

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIG  +   +L    +       S E +  IEGI   +  KI  
Sbjct: 171 ATKEELMTLPGIGEAKADSILTYRESAGGFQ--SIEQIKEIEGIKDGVFEKIKE 222


>gi|205374418|ref|ZP_03227215.1| hypothetical protein Bcoam_15021 [Bacillus coahuilensis m4-4]
          Length = 311

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRSSPET-LASIEGISKKIACKIYNHF 607
           PL ++ G+G  +   L +  G  +++ + ++  E  + ++ G  KK   KI    
Sbjct: 3   PLLQLQGLGGKKIAKLYKELGIKSMEELKKACEEEKVQALAGFGKKTEEKILAAI 57


>gi|167630651|ref|YP_001681150.1| competence protein [Heliobacterium modesticaldum Ice1]
 gi|167593391|gb|ABZ85139.1| competence protein [Heliobacterium modesticaldum Ice1]
          Length = 222

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 12/48 (25%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSS-----PETLASIEGISKK 598
            LD + G+GP   + ++Q          +       E L ++ GI  K
Sbjct: 170 ELDRLPGVGPSTAQKIIQY-------RETKGPFQCIEDLQNVPGIGPK 210


>gi|307105919|gb|EFN54166.1| hypothetical protein CHLNCDRAFT_58250 [Chlorella variabilis]
          Length = 1182

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 17/57 (29%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPET----------LASIEGISKKIACKIYNH 606
           I G+GP+  + L+  +G       +  E           L   +GI    A KI   
Sbjct: 282 IPGVGPVTAQRLVDKWG-------ADIEAKLNSRSAARYLEQCDGIGAGKAEKIKQA 331


>gi|301066374|ref|YP_003788397.1| DNA uptake protein-like DNA-binding protein [Lactobacillus casei
           str. Zhang]
 gi|300438781|gb|ADK18547.1| DNA uptake protein related DNA-binding protein [Lactobacillus casei
           str. Zhang]
          Length = 227

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           S L  I+GIGP +   ++    +           L  + GI  K 
Sbjct: 173 SQLQTISGIGPKKAADIISYRDSHGGFK--DVAELKEVHGIGDKT 215


>gi|239631592|ref|ZP_04674623.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526057|gb|EEQ65058.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 220

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           S L  I+GIGP +   ++    +           L  + GI  K 
Sbjct: 166 SQLQTISGIGPKKAADIISYRDSHGGFK--DVAELKEVHGIGDKT 208


>gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
 gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
          Length = 912

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IG  +   +   + +++ I   + + L +I+GI   +   + N
Sbjct: 190 DGIPGVTKIGEKKALAIFSQYDSLEKIYD-NIDNLKNIDGIGPSLIKNLVN 239


>gi|227535191|ref|ZP_03965240.1| competence protein EA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187236|gb|EEI67303.1| competence protein EA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 227

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           S L  I+GIGP +   ++    +           L  + GI  K 
Sbjct: 173 SQLQTISGIGPKKAADIISYRDSHGGFK--DVAELKEVHGIGDKT 215


>gi|242278123|ref|YP_002990252.1| DNA repair protein RadC [Desulfovibrio salexigens DSM 2638]
 gi|242121017|gb|ACS78713.1| DNA repair protein RadC [Desulfovibrio salexigens DSM 2638]
          Length = 225

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 15/71 (21%)

Query: 544 THRKRRK----KAAYS-----PLDEING-IGPLR-----KRLLLQSFGTVKMISRSSPET 588
            HR+R K    K + S      L+ + G + P R      + LL  FG +  + R+  E 
Sbjct: 9   GHRQRLKEKLGKDSTSLADYEILELLLGQVLPRRDTKPLAKELLAEFGGLSGVFRAPEEQ 68

Query: 589 LASIEGISKKI 599
           L   +GI   +
Sbjct: 69  LKKFKGIGPGV 79


>gi|191638323|ref|YP_001987489.1| ComE operon protein 1 [Lactobacillus casei BL23]
 gi|190712625|emb|CAQ66631.1| ComE operon protein 1 [Lactobacillus casei BL23]
 gi|327382349|gb|AEA53825.1| hypothetical protein LC2W_1492 [Lactobacillus casei LC2W]
 gi|327385550|gb|AEA57024.1| hypothetical protein LCBD_1527 [Lactobacillus casei BD-II]
          Length = 226

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           S L  I+GIGP +   ++    +           L  + GI  K 
Sbjct: 172 SQLQTISGIGPKKAADIISYRDSHGGFK--DVAELKEVHGIGDKT 214


>gi|116494812|ref|YP_806546.1| DNA uptake protein related DNA-binding protein [Lactobacillus casei
           ATCC 334]
 gi|116104962|gb|ABJ70104.1| DNA uptake protein related DNA-binding protein [Lactobacillus casei
           ATCC 334]
          Length = 223

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           S L  I+GIGP +   ++    +           L  + GI  K 
Sbjct: 169 SQLQTISGIGPKKAADIISYRDSHGGFK--DVAELKEVHGIGDKT 211


>gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440]
 gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440]
          Length = 899

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS--KKIACKIYNH 606
           L  + G+GP      + ++G V+ +  +  + +    G S  +++A  I NH
Sbjct: 195 LPGVPGVGPKTAAKWITAYGGVEGV-VARADEIKGKAGASLRERLADVIRNH 245


>gi|91789933|ref|YP_550885.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666]
 gi|123164397|sp|Q124Q5|RUVA_POLSJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|91699158|gb|ABE45987.1| Holliday junction DNA helicase RuvA [Polaromonas sp. JS666]
          Length = 190

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +AA+  L +I+G+GP     +L   G +V+ ++++ + +    +  + GI KK A +
Sbjct: 69  RAAFRQLIKISGVGPRTALSVLS--GMSVEELAQAVTHQEAGRIIKVPGIGKKTAER 123


>gi|288870097|ref|ZP_06409626.1| helicase, RecD/TraA family [Clostridium hathewayi DSM 13479]
 gi|288868451|gb|EFD00750.1| helicase, RecD/TraA family [Clostridium hathewayi DSM 13479]
          Length = 764

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
             S L  I GIGP     ++  FG +V  I    PE L  + GI++     I   + +N
Sbjct: 104 LSSGL--IKGIGPKLAADIVARFGVSVIDILEKQPERLLEVRGITENKLEDIKTSYAEN 160


>gi|284929444|ref|YP_003421966.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A]
 gi|284809888|gb|ADB95585.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A]
          Length = 682

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 30/49 (61%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I+ +G     LL ++F +V+ + ++  +TL +I+GI K++A  I + F
Sbjct: 517 GIHHVGYTTAILLTENFSSVQQLLQAPYDTLVTIKGIGKEVAYSIRSWF 565


>gi|238750790|ref|ZP_04612288.1| DNA ligase B [Yersinia rohdei ATCC 43380]
 gi|238710934|gb|EEQ03154.1| DNA ligase B [Yersinia rohdei ATCC 43380]
          Length = 563

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 585 SPETLASIEGISKKIACKIYNHFHK 609
           + E +A++ GI +  A KIY  F  
Sbjct: 461 TAEQIATVPGIGRVRAEKIYQQFQN 485


>gi|308234389|ref|ZP_07665126.1| Holliday junction DNA helicase subunit RuvA [Atopobium vaginae DSM
           15829]
 gi|328944205|ref|ZP_08241669.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium
           vaginae DSM 15829]
 gi|327491124|gb|EGF22899.1| crossover junction ATP-dependent DNA helicase RuvA [Atopobium
           vaginae DSM 15829]
          Length = 214

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACK 602
            R+++ A+  L +I+G+GP     +L ++ ++  ++  +       +A + G+ KK A +
Sbjct: 66  SRQERNAFDRLIDISGVGPKLALAVLSTY-SLSDLATIALSEDVTRMAQVPGVGKKKAQR 124

Query: 603 IY 604
           + 
Sbjct: 125 LL 126


>gi|42544169|ref|NP_973730.1| DNA excision repair protein ERCC-1 isoform 1 [Homo sapiens]
 gi|31127248|gb|AAH52813.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 1 (includes overlapping antisense
           sequence) [Homo sapiens]
          Length = 323

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISK 597
           + LL +FG+++ +  +S E LA   G+  
Sbjct: 251 QTLLTTFGSLEQLIAASREDLALCPGLGP 279


>gi|33152771|ref|NP_874124.1| Holliday junction DNA helicase motor protein [Haemophilus ducreyi
           35000HP]
 gi|38372436|sp|Q7VKV4|RUVA_HAEDU RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|33148995|gb|AAP96513.1| Holliday junction DNA helicase RuvA [Haemophilus ducreyi 35000HP]
          Length = 201

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET- 588
           +R++AH    FA     +++ +  +  L + NG+GP     +L +  +V   + +     
Sbjct: 53  VREDAHLLFGFA-----QKQDRTLFRELIKTNGVGPKLALAILSAM-SVVQFANAVENEE 106

Query: 589 ---LASIEGISKKIACKIYNHFH 608
              L  I G+ +K A ++     
Sbjct: 107 LVKLTKIPGVGRKTAERLLVELK 129


>gi|17227871|ref|NP_484419.1| Holliday junction DNA helicase RuvA [Nostoc sp. PCC 7120]
 gi|20455248|sp|Q8YZT2|RUVA_ANASP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|17129720|dbj|BAB72333.1| holliday junction DNA helicase [Nostoc sp. PCC 7120]
          Length = 213

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKI 603
           L  ++G+G      LL +      V+ I  ++ + L    G+ KKIA ++
Sbjct: 80  LLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPGVGKKIAERV 129


>gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 906

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 7/51 (13%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L  I G+G       +  FG+   +     E +  ++G   K    +  H 
Sbjct: 206 LPGIPGVGEKTAAKWINQFGSFAEL----VERVEEVKG---KAGQNLREHL 249


>gi|330806281|ref|XP_003291100.1| hypothetical protein DICPUDRAFT_20909 [Dictyostelium purpureum]
 gi|325078735|gb|EGC32370.1| hypothetical protein DICPUDRAFT_20909 [Dictyostelium purpureum]
          Length = 210

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L  I  +       L+ +F  +K +   S ETL    G     A   YN  H+
Sbjct: 152 VLTSIKSVNKTDANTLINNFKNMKAVFTCSKETLLKCPGFGPVKAQNFYNTIHQ 205


>gi|325267489|ref|ZP_08134142.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
 gi|324981014|gb|EGC16673.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
          Length = 804

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I  +G    + L  +FG +  + R+    LA +  I   +A  I ++F +
Sbjct: 566 GIRHVGESTAKQLAAAFGNLDTVRRAPEPILACLPDIGSIVAHAIAHYFKQ 616


>gi|292670920|ref|ZP_06604346.1| crossover junction endoribonuclease subunit A [Selenomonas noxia
           ATCC 43541]
 gi|292647541|gb|EFF65513.1| crossover junction endoribonuclease subunit A [Selenomonas noxia
           ATCC 43541]
          Length = 200

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 557 LDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           L  I+GIGP   + +L       F   ++I +   + +  + GI KK A +I
Sbjct: 74  LIGISGIGPKVAQGILSAITANEF--YRLIHQKDVKAITKLPGIGKKTAERI 123


>gi|222100114|ref|YP_002534682.1| DNA repair protein radC like protein [Thermotoga neapolitana DSM
           4359]
 gi|221572504|gb|ACM23316.1| DNA repair protein radC like protein [Thermotoga neapolitana DSM
           4359]
          Length = 209

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 569 RLLLQSF-GTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           + L + F  ++  +  +S E +A+IEG+    A  +    
Sbjct: 33  KELFRRFDNSLVKLMNASVEEIAAIEGVGIVKAVTLKAAL 72


>gi|163785136|ref|ZP_02179835.1| DNA repair protein RadC [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879597|gb|EDP73402.1| DNA repair protein RadC [Hydrogenivirga sp. 128-5-R1-1]
          Length = 212

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 18/73 (24%)

Query: 549 RKKAAY--------SPLDEINGIGPLRK--------RLLLQSFGTVKMISRSSPETLASI 592
           R+KA          S L  I  +G   K         L+++ FG +  +     E L  I
Sbjct: 22  REKALKYGIQSLSESELLAIA-LGSGTKGMNVIGLSDLIMKKFG-IDNLKNVKLEDLTKI 79

Query: 593 EGISKKIACKIYN 605
           +GI K  A +I  
Sbjct: 80  KGIGKTKALQILA 92


>gi|150015019|ref|YP_001307273.1| DNA integrity scanning protein DisA [Clostridium beijerinckii NCIMB
           8052]
 gi|189083125|sp|A6LPN7|DISA_CLOB8 RecName: Full=DNA integrity scanning protein disA
 gi|149901484|gb|ABR32317.1| protein of unknown function DUF147 [Clostridium beijerinckii NCIMB
           8052]
          Length = 354

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            L++ F  +  I  +    L ++EGI +  A  I +   +
Sbjct: 304 NLIKEFEELSNIIDADINDLDNVEGIGEARATAIKDGLKR 343


>gi|114567115|ref|YP_754269.1| competence protein ComEA helix-hairpin-helix region [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338050|gb|ABI68898.1| competence protein ComEA helix-hairpin-helix region [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 207

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 551 KAAYSPL-DEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           KA  S L D +NGIGP   + ++    +     +   E + ++ GI +K    I +H 
Sbjct: 149 KAPASELADRLNGIGPALSQRIVDYRESNGAFQK--IEDIKNVSGIGEKKFEAIKDHI 204


>gi|323705039|ref|ZP_08116615.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535465|gb|EGB25240.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 570

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 559 EINGIGPLRKRLLLQSF--GTVKMISRSSPE-TLASIEGISKKIACKIYN 605
           +I G+GP + + L       TV  +  +  E  L  + G  +K   KI  
Sbjct: 97  KIPGLGPKKIKTLYDKLDIKTVGELEYACIENRLVELPGFGEKTQKKILE 146


>gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
 gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
          Length = 829

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            + GIG      LL+ F  ++ I  
Sbjct: 191 GVPGIGEKTALKLLREFKNLEGIYE 215


>gi|291279404|ref|YP_003496239.1| DNA polymerase family X [Deferribacter desulfuricans SSM1]
 gi|290754106|dbj|BAI80483.1| DNA polymerase, family X [Deferribacter desulfuricans SSM1]
          Length = 568

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 557 LDEINGIGPLRKRLLLQ-----SFGTVKMISRSSPE---TLASIEGISKKIACKIYNHFH 608
           L++I G+G    + +++     S  +++ +   +P+    +  I G+  K A +++   +
Sbjct: 54  LEKIKGVGKAIAKKIIEIVNTGSLDSLEKLKEETPKILIEMTKIPGLGPKKAYRLHRELN 113

Query: 609 KNT 611
            N+
Sbjct: 114 INS 116


>gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
 gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
          Length = 912

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IG  +   +   + +++ I   + + L +I+GI   +   + N
Sbjct: 190 DGIPGVTKIGEKKALAIFSQYDSLEKIYD-NIDNLKNIDGIGPSLIKNLVN 239


>gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
 gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
          Length = 970

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 8/51 (15%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA----SIEGISKKIAC 601
           D I G   IG      LL  +GT++ +   + E +           KK A 
Sbjct: 206 DNIPGVRGIGEKTAVKLLSEYGTLEAVYN-NIEEIKGANQKKLKEGKKEAE 255


>gi|169346781|ref|ZP_02865732.1| putative comE operon protein 1 [Clostridium perfringens C str.
           JGS1495]
 gi|169297063|gb|EDS79185.1| putative comE operon protein 1 [Clostridium perfringens C str.
           JGS1495]
          Length = 254

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  +NGIG  + + ++      G  K     S + + ++ GI +K   KI +
Sbjct: 198 ASKETLMTLNGIGESKAQAIIDYRDEIGGFK-----SVDDITNVSGIGEKTLEKIKD 249


>gi|332229234|ref|XP_003263796.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Nomascus
            leucogenys]
          Length = 2024

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 559  EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             I  +  +    +   F +VK ++ SS + ++    ++ + A +IY + H
Sbjct: 1954 SIPNVSYITALNMCHQFSSVKRMANSSLQEISMYAQVTHEKAEEIYRYIH 2003


>gi|332229232|ref|XP_003263795.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Nomascus
            leucogenys]
          Length = 2050

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 559  EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
             I  +  +    +   F +VK ++ SS + ++    ++ + A +IY + H
Sbjct: 1980 SIPNVSYITALNMCHQFSSVKRMANSSLQEISMYAQVTHEKAEEIYRYIH 2029


>gi|300813353|ref|ZP_07093704.1| helicase, RecD/TraA family [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512496|gb|EFK39645.1| helicase, RecD/TraA family [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 727

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I  +G    R +++ FG  T++ I   +P+ L SIEGI +K   KIY    KN
Sbjct: 88  IPFVGEKVARKIVEEFGENTLE-ILEKNPQRLLSIEGIGRKKYKKIYEALEKN 139


>gi|229493526|ref|ZP_04387311.1| 5-3 exonuclease [Rhodococcus erythropolis SK121]
 gi|229319487|gb|EEN85323.1| 5-3 exonuclease [Rhodococcus erythropolis SK121]
          Length = 321

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE---TLASIEGISKKI 599
           L  I G+G      L+  +G++  +  ++ +    +A   GI  K+
Sbjct: 206 LPGIKGVGEKTASTLMLRYGSLAGLRAAAADPESDMAK--GIRAKL 249


>gi|226306651|ref|YP_002766611.1| 5'-3' exonuclease [Rhodococcus erythropolis PR4]
 gi|226185768|dbj|BAH33872.1| probable 5'-3' exonuclease [Rhodococcus erythropolis PR4]
          Length = 321

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPE---TLASIEGISKKI 599
           L  I G+G      L+  +G++  +  ++ +    +A   GI  K+
Sbjct: 206 LPGIKGVGEKTASTLMLRYGSLAGLRAAAADPESDMAK--GIRAKL 249


>gi|153939089|ref|YP_001392254.1| putative comE operon protein 1 [Clostridium botulinum F str.
           Langeland]
 gi|152934985|gb|ABS40483.1| putative comE operon protein 1 [Clostridium botulinum F str.
           Langeland]
 gi|295320250|gb|ADG00628.1| putative comE operon protein 1 [Clostridium botulinum F str.
           230613]
          Length = 202

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  I GIG +  + +L      GT K       E L +I  I  K   KI  
Sbjct: 146 ASKEELKSIPGIGDVTAQKILDYREKQGTFKN-----FEDLKAIGRIGDKTIEKIKE 197



 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 583 RSSPETLASIEGISKKIACKIYNH 606
            +S E L SI GI    A KI ++
Sbjct: 145 SASKEELKSIPGIGDVTAQKILDY 168


>gi|145592541|ref|YP_001154543.1| flap endonuclease-1 [Pyrobaculum arsenaticum DSM 13514]
 gi|166973704|sp|A4WNC4|FEN_PYRAR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|145284309|gb|ABP51891.1| flap endonuclease 1 [Pyrobaculum arsenaticum DSM 13514]
          Length = 346

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMI 581
           D + GIGP R   L+  FG+++ +
Sbjct: 243 DGVPGIGPQRALKLIWEFGSLEKL 266


>gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3]
 gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3]
          Length = 878

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG++  I  
Sbjct: 195 DNIPGVTKIGEKTGLKLLTEFGSLDGIYE 223


>gi|327394173|dbj|BAK11595.1| Holliday junction DNA helicase RuvA [Pantoea ananatis AJ13355]
          Length = 175

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++A +  L ++NG+GP     +L     Q F  V  + +     L  + G+ KK A 
Sbjct: 36  SKQERALFRELIKVNGVGPKLALAILSGMSAQQF--VTAVEKEEIAALVKLPGVGKKTAE 93

Query: 602 KI 603
           ++
Sbjct: 94  RL 95


>gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14]
          Length = 878

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG++  I  
Sbjct: 195 DNIPGVTKIGEKTGLKLLTEFGSLDGIYE 223


>gi|301155728|emb|CBW15196.1| component of RuvABC resolvasome, regulatory subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 203

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 533 LRDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSS 585
           +R++AH    FA     ++  +  +  L + NG+GP     +L +  +V      I R  
Sbjct: 53  VREDAHLLFGFA-----QKTDRTLFRELIKTNGVGPKLALAILSAM-SVDQFAYAIEREE 106

Query: 586 PETLASIEGISKKIACKIYNHFH 608
              L  I G+ KK A ++     
Sbjct: 107 LSKLVKIPGVGKKTAERLLVELK 129


>gi|291617754|ref|YP_003520496.1| RuvA [Pantoea ananatis LMG 20103]
 gi|291152784|gb|ADD77368.1| RuvA [Pantoea ananatis LMG 20103]
          Length = 204

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++A +  L ++NG+GP     +L     Q F  V  + +     L  + G+ KK A 
Sbjct: 65  SKQERALFRELIKVNGVGPKLALAILSGMSAQQF--VTAVEKEEIAALVKLPGVGKKTAE 122

Query: 602 KI 603
           ++
Sbjct: 123 RL 124


>gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
 gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
          Length = 911

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 7/61 (11%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D I G+   G      LLQ  G V  I  +    L  +  +S + A  +     K+    
Sbjct: 185 DNIPGVAGVGEKTALALLQGIGGVDAIYGA----LDQVADLSVRGAKTLAAKLEKHRDEA 240

Query: 615 P 615
            
Sbjct: 241 E 241


>gi|148377432|ref|YP_001256308.1| DNA polymerase I [Mycoplasma agalactiae PG2]
 gi|148291478|emb|CAL58863.1| DNA polymerase I: 5' 3' exonuclease domain [Mycoplasma agalactiae
           PG2]
          Length = 305

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            L  + GIGP +   LL  FGT++ I     E +  I G +K+
Sbjct: 200 KLKGVAGIGPKKAISLLNEFGTLEAIY----ENINKITGKTKE 238


>gi|148380929|ref|YP_001255470.1| putative comE operon protein 1 [Clostridium botulinum A str. ATCC
           3502]
 gi|153930808|ref|YP_001385298.1| putative comE operon protein 1 [Clostridium botulinum A str. ATCC
           19397]
 gi|153934900|ref|YP_001388706.1| putative comE operon protein 1 [Clostridium botulinum A str. Hall]
 gi|170754697|ref|YP_001782611.1| putative comE operon protein 1 [Clostridium botulinum B1 str. Okra]
 gi|148290413|emb|CAL84540.1| putative competence protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152926852|gb|ABS32352.1| putative comE operon protein 1 [Clostridium botulinum A str. ATCC
           19397]
 gi|152930814|gb|ABS36313.1| putative comE operon protein 1 [Clostridium botulinum A str. Hall]
 gi|169119909|gb|ACA43745.1| putative comE operon protein 1 [Clostridium botulinum B1 str. Okra]
          Length = 202

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  I GIG +  + +L      GT K       E L +I  I  K   KI  
Sbjct: 146 ASKEELKSIPGIGDVTAQKILDYREKQGTFKN-----FEDLKAIGRIGDKTIEKIKE 197



 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 583 RSSPETLASIEGISKKIACKIYNH 606
            +S E L SI GI    A KI ++
Sbjct: 145 SASKEELKSIPGIGDVTAQKILDY 168


>gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68]
 gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591]
          Length = 878

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG++  I  
Sbjct: 195 DNIPGVTKIGEKTGLKLLTEFGSLDGIYE 223


>gi|326799497|ref|YP_004317316.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium
           sp. 21]
 gi|326550261|gb|ADZ78646.1| Holliday junction ATP-dependent DNA helicase ruvA [Sphingobacterium
           sp. 21]
          Length = 194

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVK--MISRS----SPETLASIEGISKKIACKIY 604
           +  ++ L  ++GIG    R++L    ++    I  +      + +  I+GI  K A +I 
Sbjct: 68  RRLFNHLLSVSGIGASTGRMILS---SITPTEIQTAIVQGDVKQIQRIKGIGPKSAQRII 124

Query: 605 ----NHFHKNTSHT 614
               +   K  + T
Sbjct: 125 LELQDKLKKEGADT 138


>gi|255067904|ref|ZP_05319759.1| DNA topoisomerase [Neisseria sicca ATCC 29256]
 gi|255047786|gb|EET43250.1| DNA topoisomerase [Neisseria sicca ATCC 29256]
          Length = 44

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 14/47 (29%)

Query: 558 DEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK 598
           + + GIGP + + ++        F +V        E L +++GI + 
Sbjct: 2   EALPGIGPAKAKAIVDYRQQHGAFKSV--------EELKNVKGIGEA 40


>gi|227509436|ref|ZP_03939485.1| competence protein ComEA [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227191148|gb|EEI71215.1| competence protein ComEA [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 247

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 12/53 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKI 599
           A  S L E+NGIG  +   ++          ++     S E L  + G   K 
Sbjct: 192 ADKSKLQELNGIGDKKADQIIAY-------RQAHGQFKSIEELKDVPGFGDKT 237


>gi|227524103|ref|ZP_03954152.1| competence protein ComEA [Lactobacillus hilgardii ATCC 8290]
 gi|227088734|gb|EEI24046.1| competence protein ComEA [Lactobacillus hilgardii ATCC 8290]
          Length = 247

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 12/53 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKI 599
           A  S L E+NGIG  +   ++          ++     S E L  + G   K 
Sbjct: 192 ADKSKLQELNGIGDKKADQIIAY-------RQAHGQFKSIEELKDVPGFGDKT 237


>gi|227512167|ref|ZP_03942216.1| competence protein ComEA [Lactobacillus buchneri ATCC 11577]
 gi|227084561|gb|EEI19873.1| competence protein ComEA [Lactobacillus buchneri ATCC 11577]
          Length = 247

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 12/53 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKI 599
           A  S L E+NGIG  +   ++          ++     S E L  + G   K 
Sbjct: 192 ADKSKLQELNGIGDKKADQIIAY-------RQAHGQFKSIEELKDVPGFGDKT 237


>gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33]
 gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33]
 gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84]
 gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407]
 gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 05ZYH33]
 gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 98HAH33]
 gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84]
 gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407]
 gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1]
          Length = 878

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      LL  FG++  I  
Sbjct: 195 DNIPGVTKIGEKTGLKLLTEFGSLDGIYE 223


>gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824]
 gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824]
 gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018]
          Length = 871

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + GIGP     L+Q +G+V+ +     + + +I+G       KI  + 
Sbjct: 191 GVPGIGPKTAFKLIQEYGSVENV----LDNIQNIKG------KKIKENL 229


>gi|302499611|ref|XP_003011801.1| hypothetical protein ARB_02030 [Arthroderma benhamiae CBS 112371]
 gi|291175354|gb|EFE31161.1| hypothetical protein ARB_02030 [Arthroderma benhamiae CBS 112371]
          Length = 883

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 13/77 (16%)

Query: 545 HRKRRKKAAYSPL--DEI---NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           HR       +S L  D I    G+ P     L+     +  ++    E L     + K+ 
Sbjct: 811 HR------VFSLLPQDMIRAVPGVEPKVLERLILETKNIHEVANMEIEQLE--PLVGKEA 862

Query: 600 ACKIYNHFHKNTSHTPT 616
           A KIY  F ++   + T
Sbjct: 863 ARKIYKFFTRSVFDSET 879


>gi|120602036|ref|YP_966436.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris DP4]
 gi|166230546|sp|A1VC43|RUVA_DESVV RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|120562265|gb|ABM28009.1| Holliday junction DNA helicase subunit RuvA [Desulfovibrio vulgaris
           DP4]
          Length = 202

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKIYNH 606
           +  +  L  I+ +G      +L  F     + R   E     L  + GI KK A  I+  
Sbjct: 70  RQTFIVLTSISKVGAKTGLAILSQFR-PDDLRRLVVEDDVLALTRVSGIGKKTAQHIFLE 128

Query: 607 FH 608
             
Sbjct: 129 LK 130


>gi|110803602|ref|YP_699396.1| comE operon protein 1 [Clostridium perfringens SM101]
 gi|110684103|gb|ABG87473.1| putative comE operon protein 1 [Clostridium perfringens SM101]
          Length = 254

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  +NGIG  + + ++      G  K     S + + ++ GI +K   KI +
Sbjct: 198 ASKETLMTLNGIGESKAQAIIDYRDEIGGFK-----SVDDITNVSGIGEKTLEKIKD 249


>gi|46580661|ref|YP_011469.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81566321|sp|Q729U3|RUVA_DESVH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|46450080|gb|AAS96729.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234390|gb|ADP87244.1| Holliday junction DNA helicase RuvA [Desulfovibrio vulgaris RCH1]
          Length = 202

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKIYNH 606
           +  +  L  I+ +G      +L  F     + R   E     L  + GI KK A  I+  
Sbjct: 70  RQTFIVLTSISKVGAKTGLAILSQFR-PDDLRRLVVEDDVLALTRVSGIGKKTAQHIFLE 128

Query: 607 FH 608
             
Sbjct: 129 LK 130


>gi|149366014|ref|ZP_01888049.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|153949523|ref|YP_001401004.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           31758]
 gi|161484795|ref|NP_669562.2| Holliday junction DNA helicase RuvA [Yersinia pestis KIM 10]
 gi|161511391|ref|NP_993241.2| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|161760577|ref|YP_070557.2| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           32953]
 gi|162420589|ref|YP_001606843.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola]
 gi|165928362|ref|ZP_02224194.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938889|ref|ZP_02227443.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009183|ref|ZP_02230081.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210491|ref|ZP_02236526.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401440|ref|ZP_02306937.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420007|ref|ZP_02311760.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424505|ref|ZP_02316258.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470862|ref|ZP_02335566.1| Holliday junction DNA helicase motor protein [Yersinia pestis FV-1]
 gi|170024378|ref|YP_001720883.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           YPIII]
 gi|186895407|ref|YP_001872519.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           PB1/+]
 gi|218929164|ref|YP_002347039.1| Holliday junction DNA helicase RuvA [Yersinia pestis CO92]
 gi|229894771|ref|ZP_04509951.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Pestoides A]
 gi|229897474|ref|ZP_04512630.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229898120|ref|ZP_04513269.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901979|ref|ZP_04517100.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Nepal516]
 gi|270490837|ref|ZP_06207911.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27]
 gi|294503877|ref|YP_003567939.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           Z176003]
 gi|20455249|sp|Q8ZEU6|RUVA_YERPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|90146256|sp|Q66AU0|RUVA_YERPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|167012664|sp|A7FIC6|RUVA_YERP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560143|sp|B2K323|RUVA_YERPB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560144|sp|A9QYX3|RUVA_YERPG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560145|sp|B1JLL1|RUVA_YERPY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115347775|emb|CAL20692.1| Holliday junction DNA helicase [Yersinia pestis CO92]
 gi|149292427|gb|EDM42501.1| Holliday junction DNA helicase [Yersinia pestis CA88-4125]
 gi|152961018|gb|ABS48479.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis IP
           31758]
 gi|162353404|gb|ABX87352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Angola]
 gi|165913252|gb|EDR31875.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919645|gb|EDR36978.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991738|gb|EDR44039.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207671|gb|EDR52151.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961702|gb|EDR57723.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049136|gb|EDR60544.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167056387|gb|EDR66156.1| Holliday junction DNA helicase RuvA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750912|gb|ACA68430.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           YPIII]
 gi|186698433|gb|ACC89062.1| Holliday junction DNA helicase RuvA [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680875|gb|EEO76970.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Nepal516]
 gi|229688836|gb|EEO80903.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229693811|gb|EEO83860.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229702244|gb|EEO90263.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis Pestoides A]
 gi|262362004|gb|ACY58725.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           D106004]
 gi|262365859|gb|ACY62416.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           D182038]
 gi|270339341|gb|EFA50118.1| Holliday junction DNA helicase RuvA [Yersinia pestis KIM D27]
 gi|294354336|gb|ADE64677.1| Holliday junction DNA helicase motor protein [Yersinia pestis
           Z176003]
 gi|320015265|gb|ADV98836.1| component of RuvABC resolvasome, regulatory subunit [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 204

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A 
Sbjct: 65  NKQERALFRELIKVNGVGPKLALAILSGMSAQQF--VGAVEREDITTLVKLPGVGKKTAE 122

Query: 602 KI 603
           ++
Sbjct: 123 RL 124


>gi|108807436|ref|YP_651352.1| Holliday junction DNA helicase RuvA [Yersinia pestis Antiqua]
 gi|108811697|ref|YP_647464.1| Holliday junction DNA helicase RuvA [Yersinia pestis Nepal516]
 gi|145598360|ref|YP_001162436.1| Holliday junction DNA helicase RuvA [Yersinia pestis Pestoides F]
 gi|21959100|gb|AAM85813.1|AE013828_4 Holliday junction helicase subunit B [Yersinia pestis KIM 10]
 gi|45436564|gb|AAS62118.1| Holliday junction helicase subunit B [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51589648|emb|CAH21278.1| Holliday junction DNA helicase [Yersinia pseudotuberculosis IP
           32953]
 gi|108775345|gb|ABG17864.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Nepal516]
 gi|108779349|gb|ABG13407.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Antiqua]
 gi|145210056|gb|ABP39463.1| Holliday junction DNA helicase subunit RuvA [Yersinia pestis
           Pestoides F]
          Length = 226

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++A +  L ++NG+GP     +L     Q F  V  + R    TL  + G+ KK A 
Sbjct: 87  NKQERALFRELIKVNGVGPKLALAILSGMSAQQF--VGAVEREDITTLVKLPGVGKKTAE 144

Query: 602 KI 603
           ++
Sbjct: 145 RL 146


>gi|325989642|ref|YP_004249341.1| 5'-3' exonuclease [Mycoplasma suis KI3806]
 gi|323574727|emb|CBZ40383.1| 5\'-3\' exonuclease [Mycoplasma suis]
          Length = 278

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            I  IGP     L+Q F T + I  SS E +       +K+   I  
Sbjct: 198 GIPKIGPKTATKLIQQFKT-ENIFLSSLEEIQE-----EKLRQSILE 238


>gi|311029281|ref|ZP_07707371.1| NAD-dependent DNA ligase LigA [Bacillus sp. m3-13]
          Length = 668

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + L Q F  +  ++R + E L +I  I  K+A  I  +F
Sbjct: 515 VGAKAAKTLAQEFDHMDQLARLTKEELTAIHEIGDKMADSIVTYF 559


>gi|227548751|ref|ZP_03978800.1| possible competence protein EA [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079163|gb|EEI17126.1| possible competence protein EA [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 214

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 14/56 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
            L  + G+G      ++        F        +S E L  ++GI       + +
Sbjct: 163 ELTTLPGVGDATAAAIIAHREANGPF--------ASVEQLMDVKGIGPAKFEALKD 210


>gi|20807407|ref|NP_622578.1| DNA uptake protein and related DNA-binding proteins
           [Thermoanaerobacter tengcongensis MB4]
 gi|20515928|gb|AAM24182.1| DNA uptake protein and related DNA-binding proteins
           [Thermoanaerobacter tengcongensis MB4]
          Length = 196

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSF----GTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIGP+    +++ F    G  K I     E + ++  I  K+  +I +
Sbjct: 140 ATKEELQTLPGIGPVTAERIIE-FRETKGPFKKI-----EDIMNVPRIGPKMFEQIKD 191


>gi|50287003|ref|XP_445931.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525237|emb|CAG58850.1| unnamed protein product [Candida glabrata]
          Length = 887

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 556 PLDEINGIGPLRKRLLLQSFG----TVKMIS-RSSPETLASIEGISKKIACKIYNHFHKN 610
            L ++ G+G      LL +F      +  +  R+S E L +  G+  K+  KIY      
Sbjct: 460 KLKDLPGVGHSIVTKLLTAFKCKDMNLAELKQRASLEFLKNCVGV--KLGTKIYLALQGQ 517

Query: 611 TSHTPT 616
                T
Sbjct: 518 DDEEST 523


>gi|26553869|ref|NP_757803.1| excinuclease [Mycoplasma penetrans HF-2]
 gi|26453876|dbj|BAC44207.1| predicted excinuclease [Mycoplasma penetrans HF-2]
          Length = 113

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 26/85 (30%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRI-KSYMHSNNHTHRITHMISQI-------------- 55
          GVY + +    + YVG++ N+ KRI + + ++N+        +  I              
Sbjct: 26 GVYIIWNKTKNLYYVGQSKNVNKRIFRDHFNNND--------VKNIIFAKDWWNGDDFYY 77

Query: 56 NNIRFTVTCTEVEALLLEANMIKRL 80
            I    T  E+++  LE  +I++ 
Sbjct: 78 KTIEC-ETKDELDS--LEKELIEKY 99


>gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
 gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
          Length = 875

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI-SKKIACKIYNH 606
            + GIG      L++ + +++ +       L +IE I  KK+   ++ +
Sbjct: 193 GVPGIGEKTAFKLIKEYKSIETV-------LENIENIRGKKLKENLHEY 234


>gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1]
          Length = 968

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
            + GIGP     LL  FGT+ ++ +   E +  ++
Sbjct: 198 GVPGIGPKIAAQLLNQFGTLDLLLQ-HAEEIKQVK 231


>gi|261329278|emb|CBH12259.1| DNA repair protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 266

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           FG+V  +  ++ E L  + G ++K A +++   +
Sbjct: 178 FGSVAGLLTATAEQLTELPGFAQKKAGRLHAVLN 211


>gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
 gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
          Length = 963

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I G+G    + L+Q + T++ +       +     I  K+  KI  +F K
Sbjct: 198 GIPGVGEKTAQKLIQEYDTIENL-------ITHAGEIKGKLGEKIRENFDK 241


>gi|72391070|ref|XP_845829.1| DNA repair protein [Trypanosoma brucei TREU927]
 gi|62176456|gb|AAX70564.1| DNA repair protein, putative [Trypanosoma brucei]
 gi|70802365|gb|AAZ12270.1| DNA repair protein, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 266

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 575 FGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           FG+V  +  ++ E L  + G ++K A +++   +
Sbjct: 178 FGSVAGLLTATAEQLTELPGFAQKKAGRLHAVLN 211


>gi|302871618|ref|YP_003840254.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
 gi|302574477|gb|ADL42268.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
          Length = 673

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    + L +   ++  +   + E L S+    +K+A  +   F +  +
Sbjct: 510 GIRHIGQKAAKTLAEHISSIDDLFTITEEQLLSLPDFGEKMAKSVVTFFKQEQT 563


>gi|284007614|emb|CBA73228.1| Holliday junction ATP-dependent DNA helicase [Arsenophonus
           nasoniae]
          Length = 204

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQ-----SFGTVKMISRSSPETLASIEGISKKIACK 602
           ++++A +  L ++NG+GP     +L       F  V  I + +  +L  + G+ KK A +
Sbjct: 66  KQERALFRELIKVNGVGPKLALAILSGMSAYQF--VSAIEQEAIASLVKLPGVGKKTAER 123

Query: 603 I 603
           +
Sbjct: 124 L 124


>gi|126174865|ref|YP_001051014.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
 gi|166216240|sp|A3D5Y2|DNLJ_SHEB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|125998070|gb|ABN62145.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
          Length = 648

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
             LLQ + +++ +  ++ E +A + G ++  A  I    
Sbjct: 505 EKLLQHY-SLRELFEATVEDIAELNGFARVSAEAIVKGL 542


>gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 911

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 11/55 (20%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISR-SSPETLASIEG-ISKKIACKIYNHF 607
           D I G+   GP      L+ +G+++ +   +S      I+G I +K+A  + +H 
Sbjct: 188 DNIPGVEGCGPKTAVKWLEKYGSLQGVMDHAS-----EIKGKIGEKLAAAL-DHL 236


>gi|221127731|ref|XP_002167092.1| PREDICTED: similar to Cdc4, partial [Hydra magnipapillata]
          Length = 432

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 15/70 (21%)

Query: 546 RKRRKK-------AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGI 595
           R +  K            L+ + GIG  +   ++       + +     S   L S+EGI
Sbjct: 92  RSKMNKPMIDINSMTIQELESLPGIGKAKASAIINHREVLSSYQ-----SLSDLISVEGI 146

Query: 596 SKKIACKIYN 605
           +K +  KI  
Sbjct: 147 TKTLISKIQE 156


>gi|149275978|ref|ZP_01882123.1| DNA ligase [Pedobacter sp. BAL39]
 gi|149233406|gb|EDM38780.1| DNA ligase [Pedobacter sp. BAL39]
          Length = 671

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           +G    R L  +   +  ++ +S ETL +I+ I ++IA  I  +F K
Sbjct: 520 VGETVARKLAVATKNIDTLATASLETLTAIDEIGQRIAESIIEYFAK 566


>gi|51245783|ref|YP_065667.1| DNA transport competence protein [Desulfotalea psychrophila LSv54]
 gi|50876820|emb|CAG36660.1| similar to DNA transport competence protein (ComEA) [Desulfotalea
           psychrophila LSv54]
          Length = 149

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           A    L  I GIGP   + +++       +   SPE+L  + GI    A KI  + 
Sbjct: 91  ATTELLQTIPGIGPALGQRIVEE-RGRNGVYD-SPESLRRVSGIGASRAQKIGRYL 144


>gi|93005514|ref|YP_579951.1| Holliday junction DNA helicase RuvA [Psychrobacter cryohalolentis
           K5]
 gi|123386742|sp|Q1QCY6|RUVA_PSYCK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|92393192|gb|ABE74467.1| Holliday junction DNA helicase subunit RuvA [Psychrobacter
           cryohalolentis K5]
          Length = 207

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMIS----RSSPETLASIEGISKKIACKI 603
           R+++  +  L +ING+G      +L +  +   +     + S + L  I GI KK A ++
Sbjct: 66  RKERDVFRQLIKINGVGAKMALAMLSAM-SAAELKMHVEQDSEDALTRIPGIGKKTAQRL 124

Query: 604 Y 604
            
Sbjct: 125 L 125


>gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 911

 Score = 37.8 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IG  +   +   + +++ I   + + L SI+GI   +   + N
Sbjct: 190 DGIPGVTKIGEKKALSIFSQYDSLEKIYE-NIDNLKSIDGIGPSLIKNLIN 239


>gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 911

 Score = 37.8 bits (86), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IG  +   +   + +++ I   + + L SI+GI   +   + N
Sbjct: 190 DGIPGVTKIGEKKALSIFSQYDSLEKIYE-NIDNLKSIDGIGPSLIKNLIN 239


>gi|332968271|gb|EGK07345.1| crossover junction ATP-dependent DNA helicase RuvA [Kingella kingae
           ATCC 23330]
          Length = 188

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACK 602
           +  +  L +++GIG      +L +  T    + I+    + L+S  GI KK A +
Sbjct: 62  RTTFRQLIKVSGIGAKTALGILSAMTTDELAQAIANEDVKRLSSAPGIGKKTAER 116


>gi|319441119|ref|ZP_07990275.1| NAD-dependent DNA ligase LigA [Corynebacterium variabile DSM 44702]
          Length = 702

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHF 607
           ++  I ++S E +A I+G+   IA  + + F
Sbjct: 560 SIPAIDKASVEEMAEIDGVGGIIAQSVKDWF 590


>gi|257887196|ref|ZP_05666849.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
 gi|257823250|gb|EEV50182.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
          Length = 678

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG ++ +SRS  E++ +++ I   IA  +  +F    
Sbjct: 515 GIRHVGAKAAKILAEHFGDLETLSRSDYESIIALDTIGDIIADSVVTYFSNEE 567


>gi|304316214|ref|YP_003851359.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302777716|gb|ADL68275.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 572

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 559 EINGIGPLRKRLLLQSF--GTVKMISRSSPE-TLASIEGISKKIACKIYN 605
           +I G+GP + + L       TV  +  +  E  L  + G  +K   KI  
Sbjct: 97  KIPGLGPKKIKTLYDKLDIKTVGELEYACIENRLVELPGFGEKTQKKILE 146


>gi|284032305|ref|YP_003382236.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836]
 gi|283811598|gb|ADB33437.1| Holliday junction DNA helicase RuvA [Kribbella flavida DSM 17836]
          Length = 199

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKIYNH 606
           K+ +  L   +G+GP   +  L    +   + ++        L  + GI KK A ++   
Sbjct: 68  KSLFELLLTASGVGPKLAQAALAVL-SPDQLRQAVASEDLAMLVKVPGIGKKGAQRVVLE 126

Query: 607 FHKNTSHTPT 616
             K+    P+
Sbjct: 127 L-KDKIGAPS 135


>gi|220931538|ref|YP_002508446.1| glycogen/starch synthase, ADP-glucose type [Halothermothrix orenii
           H 168]
 gi|219992848|gb|ACL69451.1| glycogen/starch synthase, ADP-glucose type [Halothermothrix orenii
           H 168]
          Length = 587

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 14/61 (22%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           KAA S L +++GIGP   + +++       F T+K         +  ++GISK     I 
Sbjct: 531 KAAASQLQKLDGIGPAFAKRIVEYRQKQGRFKTIK--------DITKVKGISKSKYNNIK 582

Query: 605 N 605
           +
Sbjct: 583 D 583


>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
 gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
          Length = 881

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS-KKIACKIYNH 606
            + GIG      L++ +G+++ +       L ++E IS KK+   +  +
Sbjct: 193 GVPGIGTKTAFKLIKEYGSIENV-------LENVENISGKKMKQNLIEY 234


>gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 934

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 192 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 236


>gi|300811974|ref|ZP_07092431.1| putative Ribonuclease J 2 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497035|gb|EFK32100.1| putative Ribonuclease J 2 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 624

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 15  MLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHR----ITHMISQINN 57
             +  GR++  GKA NL  R++   ++   T R        +++I +
Sbjct: 224 FRNAKGRIIVAGKASNL-NRVQQVFNAAAATSRRVLLTGRDVAKIVH 269


>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
 gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
          Length = 934

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 192 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 236


>gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
 gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
          Length = 890

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 148 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 192


>gi|257895732|ref|ZP_05675385.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
 gi|257832297|gb|EEV58718.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
          Length = 678

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG ++ +SRS  E++ +++ I   IA  +  +F    
Sbjct: 515 GIRHVGAKAAKILAEHFGDLETLSRSDYESIIALDTIGDIIADSVVTYFSNEE 567


>gi|257884412|ref|ZP_05664065.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
 gi|257898303|ref|ZP_05677956.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
 gi|257820250|gb|EEV47398.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
 gi|257836215|gb|EEV61289.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
          Length = 678

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG ++ +SRS  E++ +++ I   IA  +  +F    
Sbjct: 515 GIRHVGAKAAKILAEHFGDLETLSRSDYESIIALDTIGDIIADSVVTYFSNEE 567


>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
 gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
          Length = 934

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 192 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 236


>gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21]
 gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21]
          Length = 906

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 164 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 208


>gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236]
 gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236]
          Length = 906

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 164 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 208


>gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
 gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
          Length = 906

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 164 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 208


>gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
 gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
          Length = 906

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 164 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 208


>gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)]
 gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)]
          Length = 906

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 164 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 208


>gi|227551668|ref|ZP_03981717.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
 gi|293377659|ref|ZP_06623848.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
 gi|227179231|gb|EEI60203.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
 gi|292643659|gb|EFF61780.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
          Length = 679

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG ++ +SRS  E++ +++ I   IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLETLSRSDYESIIALDTIGDIIADSVVTYFSNEE 568


>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
 gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
          Length = 934

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 192 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 236


>gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
 gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
          Length = 851

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 109 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 153


>gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2]
 gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2]
          Length = 886

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 144 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 188


>gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 481

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 192 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 236


>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
 gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
          Length = 930

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 188 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 232


>gi|91202611|emb|CAJ72250.1| predicted orf [Candidatus Kuenenia stuttgartiensis]
          Length = 128

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 12 VYQMLDIAGRVLYVGKAYNLQKRI 35
          +Y M +    VLY G   NL++R+
Sbjct: 55 IYIMTNKNNTVLYTGVTNNLKRRV 78


>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
 gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
          Length = 934

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 192 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 236


>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
 gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
 gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
          Length = 934

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGI--SKKIACKI 603
            + G+G      LLQ  G ++ +  ++ + +A++ G   SK +A K+
Sbjct: 192 GVPGVGEKTATALLQGIGGLEALY-ANLDKIAAL-GFRGSKTMAQKL 236


>gi|118581082|ref|YP_902332.1| Holliday junction DNA helicase RuvA [Pelobacter propionicus DSM
           2379]
 gi|166230581|sp|A1ASF4|RUVA_PELPD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|118503792|gb|ABL00275.1| Holliday junction DNA helicase subunit RuvA [Pelobacter propionicus
           DSM 2379]
          Length = 198

 Score = 37.8 bits (86), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 15/68 (22%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET---------LASIEGISKKIAC 601
           K+ +  L  ++G+GP   R +L        I  +             L+++ GI KK A 
Sbjct: 68  KSFFQLLLSVSGVGPRLARDILS------NIQPAQLAQALGQGDIRMLSAVPGIGKKTAE 121

Query: 602 KIYNHFHK 609
           ++     +
Sbjct: 122 RLVLELKE 129


>gi|325973199|ref|YP_004250263.1| 5'-3' exonuclease, DNA polymerase I like protein [Mycoplasma suis
           str. Illinois]
 gi|323651801|gb|ADX97883.1| 5'-3' exonuclease, DNA polymerase I like protein [Mycoplasma suis
           str. Illinois]
          Length = 259

 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            I  IGP     L+Q F T + I  SS E +       +K+   I  
Sbjct: 179 GIPKIGPKTATKLIQQFKT-ENIFLSSLEEIQE-----EKLRQSILE 219


>gi|308187172|ref|YP_003931303.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans
           C9-1]
 gi|308057682|gb|ADO09854.1| Holliday junction ATP-dependent DNA helicase ruvA [Pantoea vagans
           C9-1]
          Length = 167

 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++A +  L ++NG+GP     +L     Q F  V  + +    +L  + G+ KK A 
Sbjct: 28  SKQERALFRELIKVNGVGPKLALAILSGMSAQQF--VTAVEKEEIASLVKLPGVGKKTAE 85

Query: 602 KI 603
           ++
Sbjct: 86  RL 87


>gi|304396235|ref|ZP_07378117.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB]
 gi|304356604|gb|EFM20969.1| Holliday junction DNA helicase RuvA [Pantoea sp. aB]
          Length = 204

 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIAC 601
            ++++A +  L ++NG+GP     +L     Q F  V  + +    +L  + G+ KK A 
Sbjct: 65  SKQERALFRELIKVNGVGPKLALAILSGMSAQQF--VTAVEKEEIASLVKLPGVGKKTAE 122

Query: 602 KI 603
           ++
Sbjct: 123 RL 124


>gi|293571852|ref|ZP_06682868.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
 gi|291608106|gb|EFF37412.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
          Length = 679

 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG ++ +SRS  E++ +++ I   IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLETLSRSDYESIIALDTIGDIIADSVVTYFSNEE 568


>gi|255526659|ref|ZP_05393564.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|296187164|ref|ZP_06855561.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|255509639|gb|EET85974.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
 gi|296048199|gb|EFG87636.1| Holliday junction DNA helicase RuvA [Clostridium carboxidivorans
           P7]
          Length = 197

 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPET--LASIEGISKKIACKI 603
           + ++ L  ING+G      LL    +V  +  +  S +   +    GI KK++ +I
Sbjct: 70  SMFNLLLSINGVGAKAALSLLS-ISSVNNLKYAILSGDEKLITRAPGIGKKMSQRI 124


>gi|293557127|ref|ZP_06675681.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
 gi|294614139|ref|ZP_06694060.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
 gi|291592989|gb|EFF24577.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
 gi|291600696|gb|EFF30994.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
          Length = 679

 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            I  +G    ++L + FG ++ +SRS  E++ +++ I   IA  +  +F    
Sbjct: 516 GIRHVGAKAAKILAEHFGDLETLSRSDYESIIALDTIGDIIADSVVTYFSNEE 568


>gi|302874283|ref|YP_003842916.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium cellulovorans 743B]
 gi|307689454|ref|ZP_07631900.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium cellulovorans 743B]
 gi|302577140|gb|ADL51152.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium cellulovorans 743B]
          Length = 249

 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  + GIG      +++       F T+        E L ++ GI +K   KI +
Sbjct: 193 ATKEQLMSLKGIGETYSEKIIEYREKNGPFKTI--------EELKNVSGIGEKTFEKIKD 244


>gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 891

 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISR 583
           D I G+   GP     LL+ FG++  I  
Sbjct: 185 DNIPGLTGFGPKTAADLLEKFGSLDYILE 213


>gi|193659550|ref|XP_001944971.1| PREDICTED: flap endonuclease 1 [Acyrthosiphon pisum]
          Length = 380

 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMI 581
            I G+GP R   L++ + +++ I
Sbjct: 237 SIKGVGPKRAIELMRQYKSLENI 259


>gi|152980408|ref|YP_001351831.1| DNA processing protein [Janthinobacterium sp. Marseille]
 gi|151280485|gb|ABR88895.1| DNA processing protein [Janthinobacterium sp. Marseille]
          Length = 371

 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
            L+   G+G    R LL +FG  + I  SS   L  +  ++  IA  +   
Sbjct: 12  RLERAPGVGAGMARKLLTAFGPPQNIFSSSLSDLQQV--VAPPIARALLAA 60


>gi|90192351|gb|ABD91838.1| rad51 [Physarum polycephalum]
          Length = 198

 Score = 37.8 bits (86), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 562 GIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           GI     + L++S F TV+ ++ ++ ++L++++GIS+  A K+  
Sbjct: 24  GISAADIKKLMESGFHTVESVAYATKKSLSAVKGISEAKADKLVE 68


>gi|312877316|ref|ZP_07737282.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795879|gb|EFR12242.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
          Length = 673

 Score = 37.8 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    + L +   ++  +   + + L S+    +K+A  +   F +  +
Sbjct: 510 GIRHIGQKAAKTLAEHISSIDDLFTITEDQLLSLPDFGEKMAKSVVTFFRQEQT 563


>gi|307637571|gb|ADN80021.1| Holliday junction DNA helicase [Helicobacter pylori 908]
 gi|325996162|gb|ADZ51567.1| Holliday junction DNA helicase [Helicobacter pylori 2018]
 gi|325997758|gb|ADZ49966.1| Holliday junction DNA helicase [Helicobacter pylori 2017]
          Length = 183

 Score = 37.8 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSF--GTVKMISRSSPE--TLASIEGISKKIACKI 603
           K  +  L +ING+G      +L SF     + I  ++ E   L  + GI KK+A KI
Sbjct: 68  KILFERLLKINGVGGRIALTILSSFSPNEFENII-ATKEVKRLQQVPGIGKKLADKI 123


>gi|110799278|ref|YP_696798.1| putative comE operon protein 1 [Clostridium perfringens ATCC 13124]
 gi|168208822|ref|ZP_02634447.1| putative comE operon protein 1 [Clostridium perfringens B str. ATCC
           3626]
 gi|110673925|gb|ABG82912.1| putative comE operon protein 1 [Clostridium perfringens ATCC 13124]
 gi|170713054|gb|EDT25236.1| putative comE operon protein 1 [Clostridium perfringens B str. ATCC
           3626]
          Length = 254

 Score = 37.8 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L  +NGIG  + + ++      G  K     S + + ++ GI +K   KI +
Sbjct: 198 ASKETLMTLNGIGESKAQAIIDYRDEIGGFK-----SVDDITNVSGIGEKTLEKIKD 249


>gi|332519518|ref|ZP_08395985.1| SMF family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045366|gb|EGI81559.1| SMF family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 367

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 23/60 (38%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHTP 615
            L  +  IG    + L+   G+ + + +   + L  I+GI       ++ + H   +   
Sbjct: 11  ALQNVPKIGDTIAKKLIAHCGSPEAVLKEKKQNLLKIDGIGHVTIKDLFANNHLEAAEAE 70


>gi|312793814|ref|YP_004026737.1| DNA ligase, nad-dependent [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180954|gb|ADQ41124.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 673

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  IG    + L +   ++  +   + + L S+    +K+A  +   F +  +
Sbjct: 510 GIRHIGQKAAKTLAEHISSIDDLFTITEDQLLSLPDFGEKMAKSVVTFFRQEQT 563


>gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102]
 gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102]
          Length = 876

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 9/51 (17%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G+   G      LL  F TV+ I     + ++      KK+  K+ N
Sbjct: 188 DNIPGVAGVGEKTAIKLLNQFDTVEGIYE-HLDEIS-----GKKLKEKLQN 232


>gi|225164626|ref|ZP_03726870.1| Holliday junction resolvasome DNA-binding subunit-like protein
           [Opitutaceae bacterium TAV2]
 gi|224800771|gb|EEG19123.1| Holliday junction resolvasome DNA-binding subunit-like protein
           [Opitutaceae bacterium TAV2]
          Length = 219

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 558 DEINGIGPLRKRLLLQSFGTV----KMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           ++++G+GP     ++    ++      I      +L+   GI KK A ++          
Sbjct: 77  EQVSGVGPKLALTIMSRM-SLPVLEGAIRAGDISSLSKCPGIGKKTAERLVVELRAKVGA 135

Query: 614 TP 615
           +P
Sbjct: 136 SP 137


>gi|194017065|ref|ZP_03055677.1| DNA polymerase beta [Bacillus pumilus ATCC 7061]
 gi|194010933|gb|EDW20503.1| DNA polymerase beta [Bacillus pumilus ATCC 7061]
          Length = 570

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRS-SPETLASIEGISKKIACKIYNHFHKNTS 612
           PL ++ G+G  +   L Q  G    + +  +   E + ++ G  KK   KI     +   
Sbjct: 89  PLLKLPGLGGKKIAKLYQELGVHDAQSLKEACEAEKVQALAGFGKKTEEKILAAL-EEAG 147

Query: 613 HTP 615
             P
Sbjct: 148 KQP 150


>gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda]
 gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMI 581
            I GIGP     LL+ F ++  I
Sbjct: 192 GIPGIGPKTAIKLLEQFDSLNNI 214


>gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
 gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
          Length = 945

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMI 581
           D I G   +G    +LL+  FG+V+ +
Sbjct: 196 DNIPGLPGVGEKTAKLLIGEFGSVENL 222


>gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
 gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
          Length = 910

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMI 581
            I GIGP     LL+ F ++  I
Sbjct: 213 GIPGIGPKTAIKLLEQFDSLNNI 235


>gi|163119529|ref|YP_079667.2| hypothetical protein BL02914 [Bacillus licheniformis ATCC 14580]
 gi|145903036|gb|AAU24029.2| conserved protein YqxK [Bacillus licheniformis ATCC 14580]
          Length = 344

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 9/55 (16%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL  I GIGP   + L ++FGT    +  +     +       I  + A  +   
Sbjct: 275 PLQLIPGIGPKTIQKLKEAFGTEMNILHRVKEGDLKE-----TIRPQTAELVIKA 324


>gi|20806994|ref|NP_622165.1| exonuclease V subunit alpha [Thermoanaerobacter tengcongensis MB4]
 gi|20515477|gb|AAM23769.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase
           superfamily I member [Thermoanaerobacter tengcongensis
           MB4]
          Length = 765

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 33/94 (35%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--T----------VKMISRSSPETLASIE----- 593
           +   S L  I GIGP+  R +++ FG  +          ++ I   S E +  I      
Sbjct: 111 RFLASGL--IPGIGPVTARKIVERFGLDSLHVIETEPHRLREIKGLSDEKIKRISEAYEM 168

Query: 594 --------------GISKKIACKIYNHFHKNTSH 613
                         GIS  +A KIY  +  N   
Sbjct: 169 QKGIKEVMVFLHQFGISSHMAIKIYKEYGNNAIE 202


>gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909]
          Length = 876

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 13/60 (21%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D I G+   G      LL  F +V+ +     E +  +       A K+      +    
Sbjct: 188 DNIPGVAGVGEKTAIKLLNQFESVEGVY----EHIEEV------TAKKLKEKLINSKDDA 237


>gi|254524363|ref|ZP_05136418.1| exodeoxyribonuclease IX [Stenotrophomonas sp. SKA14]
 gi|219721954|gb|EED40479.1| exodeoxyribonuclease IX [Stenotrophomonas sp. SKA14]
          Length = 311

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 7/39 (17%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           D I G+   G     +LL  FG++  +     E L  + 
Sbjct: 190 DNIPGVSGVGSKSAAVLLAHFGSMDALY----ERLDEVP 224


>gi|89891625|ref|ZP_01203129.1| DNA ligase [Flavobacteria bacterium BBFL7]
 gi|89516172|gb|EAS18835.1| DNA  ligase [Flavobacteria bacterium BBFL7]
          Length = 684

 Score = 37.8 bits (86), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/70 (11%), Positives = 18/70 (25%), Gaps = 21/70 (30%)

Query: 563 IGPLRKRLLLQSFGTVKMISR-------------SSP--------ETLASIEGISKKIAC 601
           +G    + L + +  V  +               +          E L ++  I + IA 
Sbjct: 515 VGETVAKKLAKHYKNVDALLNMPAEPDKSSIDLFADVSSAADKKMEELTAVPEIGESIAQ 574

Query: 602 KIYNHFHKNT 611
            +        
Sbjct: 575 SLVEFIQNED 584


>gi|325474100|gb|EGC77288.1| hypothetical protein HMPREF9353_01638 [Treponema denticola F0402]
          Length = 207

 Score = 37.8 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++  +   + E LA+I+ + K  A K+Y   H
Sbjct: 6   SITDLYTLTVEELAAIDRMGKLSAEKVYKALH 37


>gi|304310173|ref|YP_003809771.1| DNA repair protein [gamma proteobacterium HdN1]
 gi|301795906|emb|CBL44107.1| DNA repair protein [gamma proteobacterium HdN1]
          Length = 224

 Score = 37.8 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598
           R +L+ FG ++ +  +S E    I+GI   
Sbjct: 48  REVLRHFGGLRPMLDASAEEFTDIKGIGAA 77


>gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score = 37.8 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPE 587
           D I G   +G    + L+  +G+++ +   S E
Sbjct: 189 DNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAE 221


>gi|269123545|ref|YP_003306122.1| hypothetical protein Smon_0775 [Streptobacillus moniliformis DSM
           12112]
 gi|268314871|gb|ACZ01245.1| protein of unknown function DUF147 [Streptobacillus moniliformis
           DSM 12112]
          Length = 349

 Score = 37.8 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 18/41 (43%)

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
                 L++ F ++  +  +  + + SI+G+ K    ++  
Sbjct: 300 KKDVENLVEHFKSLSNLLNADYDEICSIKGMGKFKTERVLR 340


>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 936

 Score = 37.8 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETL 589
           D I GI   G    + L+Q FGT++ +  ++ + L
Sbjct: 195 DNIPGIPSIGIKTAQKLIQQFGTLENLL-ANADQL 228


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score = 37.8 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPE 587
           D I G   +G    + L+  +G+++ +   S E
Sbjct: 189 DNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAE 221


>gi|225077350|ref|ZP_03720549.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens
           NRL30031/H210]
 gi|224951342|gb|EEG32551.1| hypothetical protein NEIFLAOT_02410 [Neisseria flavescens
           NRL30031/H210]
          Length = 194

 Score = 37.8 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 15/94 (15%)

Query: 518 LVLNMRDPILYFIQRL--RDEAHR---FAITTHRKRRKKAAYSPLDEINGIGPLRKRLLL 572
             L      ++   +L  R++AH    FA        ++A +  L +++GIG      +L
Sbjct: 36  YNLPPIGETVHLYTQLVVREDAHLLFGFA-----SAEERATFRQLVKVSGIGAKTALGIL 90

Query: 573 QSFGTVKMISRSSPET----LASIEGISKKIACK 602
            +      ++++  E     L+S  GI KK A +
Sbjct: 91  SAM-NADELAQAIAEEDVKRLSSAPGIGKKTAER 123


>gi|160871606|ref|ZP_02061738.1| holliday junction DNA helicase RuvA [Rickettsiella grylli]
 gi|159120405|gb|EDP45743.1| holliday junction DNA helicase RuvA [Rickettsiella grylli]
          Length = 199

 Score = 37.8 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKI-- 603
           +  ++ L +++G+GP     +L       F  V  + + +  +L ++ GI KK A ++  
Sbjct: 70  RFLFTQLLKVSGVGPKVALGILSKIEVTEF--VSCVEQQNVNSLQAVPGIGKKTAERLII 127

Query: 604 --YNHFHKNTSHTP 615
              +     + + P
Sbjct: 128 EMRDRLRNLSHNQP 141


>gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 866

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + GIGP   + LL   G+++ +     E LA I G  KK+   +
Sbjct: 192 GVPGIGPKTAKKLLIDCGSLEGVY----ERLAEISG--KKLKENL 230


>gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 867

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + GIGP   + LL   G+++ +     E LA I G  KK+   +
Sbjct: 193 GVPGIGPKTAKKLLIDCGSLEGVY----ERLAEISG--KKLKENL 231


>gi|253681607|ref|ZP_04862404.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str.
           1873]
 gi|253561319|gb|EES90771.1| holliday junction DNA helicase RuvA [Clostridium botulinum D str.
           1873]
          Length = 197

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           +A ++ L  ING+G      LL     V  + +S        L    GI KKIA +I
Sbjct: 69  RAMFNLLLTINGVGSKAALSLLS-ISNVSNLKKSILSEDYKMLTKAPGIGKKIAQRI 124


>gi|313473093|ref|ZP_07813577.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153]
 gi|313448796|gb|EEQ67671.2| holliday junction DNA helicase RuvA [Lactobacillus jensenii 1153]
          Length = 195

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     ++ +  +    K I       L    G+ KK A +I
Sbjct: 66  KQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKTASQI 121


>gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12]
          Length = 894

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IGP +   +L+ +G ++ I   + + L+ + G+ K +   +  
Sbjct: 183 DCIPGVRKIGPKKAVPMLEKYGNLEGIYE-NIDKLSELPGVGKTLIQIMKE 232


>gi|256852230|ref|ZP_05557616.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           27-2-CHN]
 gi|260661738|ref|ZP_05862649.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           115-3-CHN]
 gi|282932642|ref|ZP_06338056.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|297205604|ref|ZP_06923000.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           jensenii JV-V16]
 gi|256615276|gb|EEU20467.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           27-2-CHN]
 gi|260547485|gb|EEX23464.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           115-3-CHN]
 gi|281303216|gb|EFA95404.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|297150182|gb|EFH30479.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           jensenii JV-V16]
          Length = 193

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     ++ +  +    K I       L    G+ KK A +I
Sbjct: 66  KQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKTASQI 121


>gi|238855608|ref|ZP_04645909.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3]
 gi|260665332|ref|ZP_05866180.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933018|ref|ZP_06338412.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
 gi|238831752|gb|EEQ24088.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 269-3]
 gi|260560836|gb|EEX26812.1| Holliday junction DNA helicase RuvA [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302872|gb|EFA95080.1| holliday junction DNA helicase RuvA [Lactobacillus jensenii 208-1]
          Length = 193

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     ++ +  +    K I       L    G+ KK A +I
Sbjct: 66  KQLFLKLLSVSGIGPKSAMAIMAAESSDSLAKAIENGEVNYLTKFPGVGKKTASQI 121


>gi|254478840|ref|ZP_05092205.1| helicase, RecD/TraA family [Carboxydibrachium pacificum DSM 12653]
 gi|214035202|gb|EEB75911.1| helicase, RecD/TraA family [Carboxydibrachium pacificum DSM 12653]
          Length = 735

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 33/94 (35%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--T----------VKMISRSSPETLASIE----- 593
           +   S L  I GIGP+  R +++ FG  +          ++ I   S E +  I      
Sbjct: 81  RFLASGL--IPGIGPVTARKIVERFGLDSLHVIETEPHRLREIKGLSDEKIKRISEAYEM 138

Query: 594 --------------GISKKIACKIYNHFHKNTSH 613
                         GIS  +A KIY  +  N   
Sbjct: 139 QKGIKEVMVFLHQFGISSHMAIKIYKEYGNNAIE 172


>gi|195953813|ref|YP_002122103.1| PHP domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195933425|gb|ACG58125.1| PHP domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 576

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 8/57 (14%)

Query: 556 PLDEI---NGIGPLRKRLLLQSFG--TVKMISRSSPET--LASIEGISKKIACKIYN 605
            L +I    GIGP   + L   FG    + + ++  +   + +I+G   K    I  
Sbjct: 93  ELLDIMDAPGIGPKTLKTLYDVFGIKNKEELLKA-LDDPRIKTIKGFGPKKIENIKR 148


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPE 587
           D I G   +G    + L+  +G+++ +   S E
Sbjct: 189 DNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAE 221


>gi|294626166|ref|ZP_06704772.1| excinuclease subunit [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294667551|ref|ZP_06732766.1| excinuclease subunit [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292599518|gb|EFF43649.1| excinuclease subunit [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292602671|gb|EFF46107.1| excinuclease subunit [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 185

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 81  KPRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGS---YFGPFASVDAVEKTINS 137
           +P +N  LR       I +       A+     +          +G ++S  A ++ +  
Sbjct: 2   RPLYNQKLRRVPRQFSIRLYCG----AVSIVHSAERDPAVTPWLYGLYSSPRAAKEALRR 57

Query: 138 LQRTFFLRSCADSVFR-HRTRPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLS 192
           L     L      + R    RPC    +KRC+G C G  S   +   +  A + L 
Sbjct: 58  LADRDRLCYGLLGLERATDGRPCFRAMLKRCAGACHGAESLGDHETRLRAALQHLE 113


>gi|326445394|ref|ZP_08220128.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 687

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           G G    R + + FG +  I ++    L  +EGI  + A  I  
Sbjct: 526 GTGRSMSRRIARHFGDMGSIRQADAAALRDVEGIGPEKAPVIVE 569


>gi|225021705|ref|ZP_03710897.1| hypothetical protein CORMATOL_01733 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945696|gb|EEG26905.1| hypothetical protein CORMATOL_01733 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 259

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 12/57 (21%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKI 603
           A    L  + G+G    + ++           +     S + L  ++GI       I
Sbjct: 204 ATAQELTTLTGVGEKTAQAIIAY-------RDAHGGFTSIDELQQVKGIGPAKFATI 253


>gi|254389746|ref|ZP_05004971.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
 gi|197703458|gb|EDY49270.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 719

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           G G    R + + FG +  I ++    L  +EGI  + A  I  
Sbjct: 558 GTGRSMSRRIARHFGDMGSIRQADAAALRDVEGIGPEKAPVIVE 601


>gi|152982284|ref|YP_001354354.1| hypothetical protein mma_2664 [Janthinobacterium sp. Marseille]
 gi|151282361|gb|ABR90771.1| Hypothetical protein mma_2664 [Janthinobacterium sp. Marseille]
          Length = 113

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 9/57 (15%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLAS-IEGISKKIACKI 603
           KA  + LD I G+GP   + +L   +  G  K       + L   ++G+ +K + K+
Sbjct: 27  KADQAALDGIKGVGPAMSKAILDERKKGGNFK-----DWDDLQKRVKGVGEKNSEKL 78


>gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797]
 gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797]
          Length = 900

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 9/52 (17%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           D I G+   GP + + L++ FGT++ +  ++ +     +G   K+   +   
Sbjct: 184 DNIPGVPLVGPKKAQTLIEQFGTLEGVL-ANAD---KAKG--PKLQQNLKEF 229


>gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1]
 gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1]
          Length = 941

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            I GIG      LL+ +G+V+ + + + + L 
Sbjct: 199 GIPGIGQKTAVKLLKQYGSVEELIK-NTDDLK 229


>gi|15615594|ref|NP_243898.1| DNA repair protein RadC [Bacillus halodurans C-125]
 gi|13431811|sp|Q9K8H4|Y3032_BACHD RecName: Full=UPF0758 protein BH3032
 gi|10175654|dbj|BAB06751.1| DNA repair protein [Bacillus halodurans C-125]
          Length = 232

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIA 600
           L  F  ++++  ++ E L SI GI +  A
Sbjct: 56  LCHFDGLRLLREATVEELTSIHGIGEAKA 84


>gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740]
 gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes]
          Length = 898

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASI 592
            + G+G    + L++SFG+++ I     E L  +
Sbjct: 187 GVKGVGAKSAQKLIESFGSLEGIY----ERLEEV 216


>gi|308271402|emb|CBX28010.1| DNA ligase [uncultured Desulfobacterium sp.]
          Length = 674

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I  +G     +L   +   +    ++ + L +I+G+   +A  I +   +  +
Sbjct: 523 GIRHVGEHIAEILASKYEKYEKFCSATYDDLKNIKGVGPIVAQSIIDFLGREDN 576


>gi|238926785|ref|ZP_04658545.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531]
 gi|238885317|gb|EEQ48955.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531]
          Length = 677

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 571 LLQSFGTVKMISRS---SPETLASIEGISKKIACKIYNHF 607
           L+Q F ++  +  +   SPE + ++  + +  A K+   F
Sbjct: 529 LMQEFSSIDALQEAARESPERILAVPDMGEITAQKLTEFF 568


>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
 gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
          Length = 948

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 13/61 (21%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKM-------ISRSSPETLA--SIEGI-SKKIACKIY 604
           D I G   +G    +  L+ +G+++        +  +  + +     +GI SKK+A  + 
Sbjct: 192 DNIPGLPGVGEKTAKKFLKEYGSIENLLANTHQLKGAIKDKIEANKEKGILSKKLATILL 251

Query: 605 N 605
           +
Sbjct: 252 D 252


>gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
 gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
          Length = 876

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 13/60 (21%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D I G+   G      LL  F +V+ +     E +  +       A K+      +    
Sbjct: 188 DNIPGVAGVGEKTAIKLLNQFESVEGVY----EHIEEV------TAKKLKEKLINSKDDA 237


>gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
 gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
          Length = 869

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           D I G+   GP +   LLQ + +V+ I     E L  + G + K+
Sbjct: 185 DNIPGVSGCGPKKAAALLQKYHSVEGI----LEHLDELTGSTHKM 225


>gi|313619294|gb|EFR91032.1| DNA Polymerase X family [Listeria innocua FSL S4-378]
          Length = 193

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKM---ISRSSPETLASIEGISKKIACKIYNHFHK 609
           PL ++ G+G  +   L    G +     +  +    + +++G  KK A K+     +
Sbjct: 91  PLLDVPGLGGKKLSRLYHELGVIDKDTLLKEARNGHIEALKGFGKKSAEKMAEAVRE 147


>gi|290960416|ref|YP_003491598.1| membrane-bound DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260649942|emb|CBG73058.1| putative membrane-located DNA-binding protein [Streptomyces scabiei
           87.22]
          Length = 284

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKK 598
           A    LD + G+GP+  + ++      G  +     S + L  + GI ++
Sbjct: 229 ATADQLDTLPGVGPVLAQHIIDHRTRHGGFR-----SVDELREVNGIGER 273


>gi|229182219|ref|ZP_04309501.1| hypothetical protein bcere0005_55330 [Bacillus cereus 172560W]
 gi|228601234|gb|EEK58773.1| hypothetical protein bcere0005_55330 [Bacillus cereus 172560W]
          Length = 158

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 11  GVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNH 44
           GVY + + +  + YVG+   +  R+ ++     +
Sbjct: 72  GVYILHNKSKDLYYVGQGKQVLNRVNNHFTGKGN 105


>gi|308162866|gb|EFO65235.1| DNA helicase [Giardia lamblia P15]
          Length = 898

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 12/72 (16%)

Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI---- 599
           R RR      S L  I G+G  R R L  + + +   I  +  + L              
Sbjct: 822 RLRRITLDDLSDLLAIPGVGEKRARALRDAGYRSAWDIIEAGLDRLKQTVDFGPATEAAC 881

Query: 600 ------ACKIYN 605
                 A K+++
Sbjct: 882 VVIYRGAEKLWD 893


>gi|307294409|ref|ZP_07574253.1| DNA repair protein RadC [Sphingobium chlorophenolicum L-1]
 gi|306880560|gb|EFN11777.1| DNA repair protein RadC [Sphingobium chlorophenolicum L-1]
          Length = 245

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK--IACKIYNH-----FHKNTSHTP 615
           + LL+ F  +  +  +  + +A + G+      A KI             +  P
Sbjct: 69  KALLREFDGIGGLMAADWQAIARVPGMGDTSIAAIKIVQATMLRTLRNEVAEKP 122


>gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
 gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
          Length = 876

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 13/60 (21%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D I G+   G      LL  F +V+ +     E +  +       A K+      + +  
Sbjct: 188 DNIPGVAGVGEKTAIKLLNQFESVEGVY----EHIEEV------TAKKLKEKLINSKADA 237


>gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 928

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG +  + L+  FG+++ + +
Sbjct: 188 DNIPGCPGIGEITAKKLIARFGSIENLLK 216


>gi|157693277|ref|YP_001487739.1| hypothetical protein BPUM_2517 [Bacillus pumilus SAFR-032]
 gi|157682035|gb|ABV63179.1| DNA polymerase beta [Bacillus pumilus SAFR-032]
          Length = 570

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 556 PLDEINGIGPLRKRLLLQSFG--TVKMISRS-SPETLASIEGISKKIACKIYNHFHKNTS 612
           PL ++ G+G  +   L Q  G    + +  +   E + ++ G  KK   KI     +   
Sbjct: 89  PLLKLPGLGGKKIAKLYQELGVHDAQSLKEACEAEKVQALAGFGKKTEEKILAAL-EEAG 147

Query: 613 HTP 615
             P
Sbjct: 148 KQP 150


>gi|153955759|ref|YP_001396524.1| Holliday junction DNA helicase RuvA [Clostridium kluyveri DSM 555]
 gi|219856126|ref|YP_002473248.1| hypothetical protein CKR_2783 [Clostridium kluyveri NBRC 12016]
 gi|146348617|gb|EDK35153.1| RuvA [Clostridium kluyveri DSM 555]
 gi|219569850|dbj|BAH07834.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 196

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS--SPET--LASIEGISKKIACKI 603
             ++ L  INGIG      LL    +V  +  +  S +   L    G+ KK A +I
Sbjct: 70  NMFNLLLTINGIGAKAALSLLS-ISSVNNLKYAIISGDEKNLIRAPGVGKKTAQRI 124


>gi|75909032|ref|YP_323328.1| Holliday junction DNA helicase RuvA [Anabaena variabilis ATCC
           29413]
 gi|123758778|sp|Q3M9A3|RUVA_ANAVT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|75702757|gb|ABA22433.1| Holliday junction DNA helicase subunit RuvA [Anabaena variabilis
           ATCC 29413]
          Length = 213

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKI 603
           L  ++G+G      LL +      V+ I  ++ + L    G+ KKIA +I
Sbjct: 80  LLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPGVGKKIADRI 129


>gi|159113600|ref|XP_001707026.1| DNA helicase [Giardia lamblia ATCC 50803]
 gi|157435128|gb|EDO79352.1| DNA helicase [Giardia lamblia ATCC 50803]
          Length = 899

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 12/72 (16%)

Query: 546 RKRRKK-AAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKI---- 599
           R RR      S L  I G+G  R R L  + + +   I  +  + L              
Sbjct: 823 RLRRITLDDLSDLLAIPGVGEKRARALRDAGYRSAWDIIEAGLDRLKQTVDFGPATEAAC 882

Query: 600 ------ACKIYN 605
                 A K+++
Sbjct: 883 VVIYRGAEKLWD 894


>gi|313682066|ref|YP_004059804.1| holliday junction DNA helicase subunit ruva [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154926|gb|ADR33604.1| Holliday junction DNA helicase subunit RuvA [Sulfuricurvum kujiense
           DSM 16994]
          Length = 187

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKM----ISRSSPETLASIEGISKKIACK 602
           ++ +K  +  + +INGIGP     +  +F T +     IS      L  + GI  K A +
Sbjct: 63  QKSEKILFEGMLKINGIGPKAALAICSTF-TPEQFAGIISSKDINALKKVPGIGPKSAGR 121

Query: 603 I 603
           I
Sbjct: 122 I 122


>gi|307272661|ref|ZP_07553909.1| DNA repair protein RadC [Enterococcus faecalis TX0855]
 gi|306510656|gb|EFM79678.1| DNA repair protein RadC [Enterococcus faecalis TX0855]
          Length = 240

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 19/37 (51%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           LL+ F  +  + +++   L +++GI +  A ++    
Sbjct: 63  LLKQFKQLSYLQQATLNELMAVKGIGQVKAIELRAAI 99


>gi|294012255|ref|YP_003545715.1| DNA repair protein RadC [Sphingobium japonicum UT26S]
 gi|292675585|dbj|BAI97103.1| DNA repair protein RadC [Sphingobium japonicum UT26S]
          Length = 231

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK--IACKIYNH-----FHKNTSHTP 615
           + LL+ F  +  +  +  + +A + G+      A KI             +  P
Sbjct: 55  KALLREFDGIGGLMAADWQAIARVPGMGDTSIAAIKIVQATMLRMLRNEVAEKP 108


>gi|220916123|ref|YP_002491427.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|254766937|sp|B8JF04|RUVA_ANAD2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|219953977|gb|ACL64361.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 197

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 9/60 (15%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKM--ISRS----SPETLASIEGISKKIACKIYNHFHK 609
            L ++ G+GP   + +L     ++   ++++        L  ++GI KK A ++     +
Sbjct: 74  ALIDVKGVGPRAAQNILS---GIEARELAQAVAQGDVARLTKVQGIGKKTAERLVLELKE 130


>gi|197121426|ref|YP_002133377.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K]
 gi|229470528|sp|B4UFY0|RUVA_ANASK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|196171275|gb|ACG72248.1| Holliday junction DNA helicase RuvA [Anaeromyxobacter sp. K]
          Length = 197

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 9/60 (15%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKM--ISRS----SPETLASIEGISKKIACKIYNHFHK 609
            L ++ G+GP   + +L     ++   ++++        L  ++GI KK A ++     +
Sbjct: 74  ALIDVKGVGPRAAQNILS---GIEARELAQAVAQGDVARLTKVQGIGKKTAERLVLELKE 130


>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
 gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
          Length = 933

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            I G+G      LL+ + T++ I       L + + IS K+  K+
Sbjct: 196 GIPGVGEKTAVKLLEQYDTLEGI-------LENADKISGKLGEKV 233


>gi|196004300|ref|XP_002112017.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
 gi|317376198|sp|B3RVF0|FEN1_TRIAD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|190585916|gb|EDV25984.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
          Length = 377

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMI 581
           D I G+GP R   L++ + +++ I
Sbjct: 236 DSIKGVGPKRAVGLIEKYKSIEDI 259


>gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 931

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +GP   + LL+ +GT++ +  
Sbjct: 189 DNIPGCPGVGPKTAQKLLEEYGTIENLLE 217


>gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028]
          Length = 876

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 13/60 (21%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D I G+   G      LL  F +V+ +     E +  +       A K+      +    
Sbjct: 188 DNIPGVAGVGEKTAIKLLNQFESVEGVY----EHIEEV------TAKKLKEKLINSKDDA 237


>gi|308187959|ref|YP_003932090.1| 5'-3' exonuclease [Pantoea vagans C9-1]
 gi|308058469|gb|ADO10641.1| 5'-3' exonuclease [Pantoea vagans C9-1]
          Length = 251

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE 593
           S +  I GIGP   + LL  F T++ I +     L  + 
Sbjct: 177 SKIPGITGIGPKSAKQLLAEFHTLEGIYQ----QLDQVP 211


>gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045]
          Length = 876

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 13/60 (21%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D I G+   G      LL  F +V+ +     E +  +       A K+      +    
Sbjct: 188 DNIPGVAGVGEKTAIKLLNQFESVEGVY----EHIEEV------TAKKLKEKLINSKDDA 237


>gi|256962798|ref|ZP_05566969.1| DNA repair protein RadC [Enterococcus faecalis HIP11704]
 gi|256953294|gb|EEU69926.1| DNA repair protein RadC [Enterococcus faecalis HIP11704]
          Length = 196

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 19/37 (51%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           LL+ F  +  + +++   L +++GI +  A ++    
Sbjct: 68  LLKQFKQLSYLQQATLNELMAVKGIGQVKAIELRAAI 104


>gi|309775362|ref|ZP_07670367.1| DNA-binding protein, ComEA family [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916879|gb|EFP62614.1| DNA-binding protein, ComEA family [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 154

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 33/116 (28%)

Query: 496 SIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKAAYS 555
            + KG   SA  +   +     LV+  ++      QR+                  +A S
Sbjct: 62  GLKKGADDSALNKTQDLPDHSVLVIGKKEEK----QRI---------------SINSATS 102

Query: 556 P-LDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYN 605
             L  + GIGP   + +++      F T+        E +  ++GI +K+  KI  
Sbjct: 103 EQLQTLPGIGPSMAQRIIEYRKQQSFHTL--------EDIMKVKGIKEKLFAKIRE 150


>gi|228475171|ref|ZP_04059897.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119]
 gi|314936245|ref|ZP_07843592.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270782|gb|EEK12184.1| holliday junction DNA helicase RuvA [Staphylococcus hominis SK119]
 gi|313654864|gb|EFS18609.1| holliday junction DNA helicase RuvA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 201

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
           K  +  L ++ GIGP     +L +  T   + R+        L    GI KK A +I
Sbjct: 69  KEMFLSLIKVTGIGPKSALAILAT-STPNEVKRAIENENDTYLTKFPGIGKKTARQI 124


>gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144]
          Length = 876

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 13/60 (21%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D I G+   G      LL  F +V+ +     E +  +       A K+      +    
Sbjct: 188 DNIPGVAGVGEKTAIKLLNQFESVEGVY----EHIEEV------TAKKLKEKLINSKDDA 237


>gi|329937546|ref|ZP_08287104.1| DNA ligase [Streptomyces griseoaurantiacus M045]
 gi|329303422|gb|EGG47309.1| DNA ligase [Streptomyces griseoaurantiacus M045]
          Length = 697

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            I G G    R + + F T+  I  +  E +  +EGI  + A  I     +
Sbjct: 515 GIRGTGRSMSRRIARHFATMDHIRAADAEAMRRVEGIGTEKAPSIVAELAE 565


>gi|282889767|ref|ZP_06298306.1| hypothetical protein pah_c004o139 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500341|gb|EFB42621.1| hypothetical protein pah_c004o139 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 424

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 556 PLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           PL  I G+  L    L+   + T + I  ++PE LA++ GIS ++A KI     K
Sbjct: 367 PLKNIEGVNTLIFEHLIAEGYSTPRAILTAAPEKLATVPGISIELADKILEQIRK 421


>gi|317153157|ref|YP_004121205.1| helicase, RecD/TraA family [Desulfovibrio aespoeensis Aspo-2]
 gi|316943408|gb|ADU62459.1| helicase, RecD/TraA family [Desulfovibrio aespoeensis Aspo-2]
          Length = 736

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 559 EINGIGPLRKRLLLQSFG-TVKMISRSSPETLASIEGISKKIACKIYN 605
            I G+G      L+++FG  V  +    PE L SI+GISK     I +
Sbjct: 94  SIKGVGEKTATRLVEAFGVAVLDLLDDDPEQLLSIKGISKNKLTDIID 141


>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 867

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMI 581
           D I G   IG      L++ FG+++ +
Sbjct: 187 DNIPGVPNIGEKTAIKLIKEFGSIENV 213


>gi|219669644|ref|YP_002460079.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense
           DCB-2]
 gi|219539904|gb|ACL21643.1| Holliday junction DNA helicase RuvA [Desulfitobacterium hafniense
           DCB-2]
          Length = 198

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 559 EINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            ++GIGP     +L + G   T   I+  +   L  + GI KK A ++     +
Sbjct: 73  SVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKTAQRLILELKE 126


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
          Length = 971

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPE 587
           D I G   +G    + L+  +G+++ +   S E
Sbjct: 189 DNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAE 221


>gi|254468402|ref|ZP_05081808.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13]
 gi|207087212|gb|EDZ64495.1| Holliday junction DNA helicase RuvA [beta proteobacterium KB13]
          Length = 189

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPET-----LASIEGISKKIACKIY 604
           K+++  L +INGIG      +L   G ++   S +  E      L  I GI +K A ++ 
Sbjct: 69  KSSFKSLIKINGIGAKVALSILS--GVSMDQFSNA-IEQQDVSLLVKIPGIGRKTAERLI 125

Query: 605 NHFHKNTS 612
                   
Sbjct: 126 VELKDKQD 133


>gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
 gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
          Length = 903

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 13/60 (21%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D I G+   G      LL  F +V+ +     E +  +       A K+      +    
Sbjct: 215 DNIPGVAGVGEKTAIKLLNQFESVEGVY----EHIEEV------TAKKLKEKLINSKDDA 264


>gi|89895213|ref|YP_518700.1| hypothetical protein DSY2467 [Desulfitobacterium hafniense Y51]
 gi|122997255|sp|Q24UN6|RUVA_DESHY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|89334661|dbj|BAE84256.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 201

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 559 EINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
            ++GIGP     +L + G   T   I+  +   L  + GI KK A ++     +
Sbjct: 76  SVSGIGPKAALSILSTLGIGQTESAIASENITLLTKVPGIGKKTAQRLILELKE 129


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPE 587
           D I G   +G    + L+  +G+++ +   S E
Sbjct: 189 DNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAE 221


>gi|251793443|ref|YP_003008172.1| hypothetical protein NT05HA_1759 [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534839|gb|ACS98085.1| hypothetical protein NT05HA_1759 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 207

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           L  ++GIG ++ + +++       I     E L+++ G+      KI  H
Sbjct: 156 LQSLSGIGEVKAKAIIEYREKNGKIKN--LEELSNVPGVGDSTLEKIKPH 203


>gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPE 587
           D I G   +G    + L+  +G+++ +   S E
Sbjct: 189 DNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAE 221


>gi|228967555|ref|ZP_04128581.1| DNA repair protein radC [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792134|gb|EEM39710.1| DNA repair protein radC [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 132

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI GI    A ++   F
Sbjct: 50  KILHQFDGLRMLKDATLEELISIHGIGISKASQLMAAF 87


>gi|206890013|ref|YP_002248228.1| DNA repair protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741951|gb|ACI21008.1| DNA repair protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 224

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           LLQ+F  ++ +  +S   L S +G+      +I   F
Sbjct: 51  LLQNFRGLRGLEEASISELKSFKGLGIAKIAQIKASF 87


>gi|146329194|ref|YP_001209306.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A]
 gi|166215582|sp|A5EVZ5|DNLJ_DICNV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|146232664|gb|ABQ13642.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A]
          Length = 678

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTS 612
            I G+G +  + L   FG +     +    L  IEGI   +A  I + F    +
Sbjct: 520 GIRGVGSVNAQALAAHFGDLAAFMAADRAALQEIEGIGDVVAADIEHFFADEDN 573


>gi|114565926|ref|YP_753080.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318951|sp|Q0AZZ5|DNLJ_SYNWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|114336861|gb|ABI67709.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 661

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 550 KKAA-YSPLD---EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            K+   S L     I  IG    ++L +    +    +   E L SI  I  K+A  + N
Sbjct: 495 SKSRPLSRLLTALGIRHIGARSAKILSRHIHDIDDFYKLGVENLTSIPEIGPKMAESMVN 554

Query: 606 HFHK 609
            F +
Sbjct: 555 FFAE 558


>gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|332287087|ref|YP_004421988.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1]
 gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC]
          Length = 869

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKI 599
           D I G+   GP +   LLQ + +V+ I     E L  + G + K+
Sbjct: 185 DNIPGVSGCGPKKATALLQKYHSVEGI----LEHLDELTGSTHKM 225


>gi|315282006|ref|ZP_07870513.1| bifunctional DNA polymerase/histidinol phosphatase [Listeria
           marthii FSL S4-120]
 gi|313614351|gb|EFR87988.1| bifunctional DNA polymerase/histidinol phosphatase [Listeria
           marthii FSL S4-120]
          Length = 570

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKM---ISRSSPETLASIEGISKKIACKIYNHFHK 609
           PL ++ G+G  +   L    G V     +  +    + +++G  KK A K+     +
Sbjct: 91  PLLDVPGLGGKKLSRLYHELGVVDKETLLKEAENGHIEALKGFGKKSAEKMAEAVRE 147


>gi|269303191|gb|ACZ33291.1| transcription termination factor NusA [Chlamydophila pneumoniae
           LPCoLN]
          Length = 434

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           E+ GI  L  + L +   + T++ +  +S   LAS+ GIS ++A KI  
Sbjct: 369 EMEGISKLVIQNL-EHAGYDTIRRVLLASANDLASVPGISLELAYKILE 416


>gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11]
          Length = 912

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           D I G   IG  +   +   + +++ I   + + L +I+GI   +   + N
Sbjct: 190 DGIPGVTKIGEKKALAIFSQYDSLEKIYD-NIDNLKNIDGIGPSLIKILIN 239


>gi|239817626|ref|YP_002946536.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110]
 gi|259495659|sp|C5CM11|RUVA_VARPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|239804203|gb|ACS21270.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus S110]
          Length = 190

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPETL---ASIEGISKKIACK 602
           +AA+  L +I+G+GP     LL   G +V  +S++ + + L     I GI KK A +
Sbjct: 69  RAAFRQLIKISGVGPRTALGLLS--GMSVGELSQAITTQELGRLVKIPGIGKKTAER 123


>gi|307151063|ref|YP_003886447.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 7822]
 gi|306981291|gb|ADN13172.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 7822]
          Length = 538

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 580 MISRSSPETLASIEGISKKIACKIYN 605
            ++ +S E L ++ GI   +A KI  
Sbjct: 480 NLNTASLEELETLPGIGTSLAKKILK 505


>gi|313624053|gb|EFR94137.1| DNA polymerase IV fused to PHP phosphatase [Listeria innocua FSL
           J1-023]
          Length = 570

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKM---ISRSSPETLASIEGISKKIACKIYNHFHK 609
           PL ++ G+G  +   L    G V     +  +    + +++G  KK A K+     +
Sbjct: 91  PLLDVPGLGGKKLSRLYHELGVVDKDTLLKEAENGHIEALKGFGKKSAEKMAEAVRE 147


>gi|282881936|ref|ZP_06290581.1| helicase, RecD/TraA family [Peptoniphilus lacrimalis 315-B]
 gi|281298211|gb|EFA90662.1| helicase, RecD/TraA family [Peptoniphilus lacrimalis 315-B]
          Length = 727

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I  +G    R +++ FG  T++ I   +P+ L SIEGI +K   KIY    KN
Sbjct: 88  IPFVGEKVARKIVEEFGENTLE-ILEKNPQRLLSIEGIGRKKYKKIYEALGKN 139


>gi|289192763|ref|YP_003458704.1| DNA repair and recombination protein RadA [Methanocaldococcus sp.
           FS406-22]
 gi|288939213|gb|ADC69968.1| DNA repair and recombination protein RadA [Methanocaldococcus sp.
           FS406-22]
          Length = 324

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGIS 596
           L ++ G+GP     L ++ +     I+ +S   L  I+GIS
Sbjct: 8   LTQLPGVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGIS 48


>gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319]
 gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319]
          Length = 920

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 18/54 (33%)

Query: 561 NGIGPLRKRLLLQSFGTVKMIS--------------RSSPETLASIEGISKKIA 600
            G+G      L+  FG++  +                ++ E +     ISK +A
Sbjct: 194 PGVGEKTAAKLISQFGSIDNMLAHTDEIKGKLREKVEAAVEDIK----ISKFLA 243


>gi|238764312|ref|ZP_04625263.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
 gi|238697463|gb|EEP90229.1| DNA ligase B [Yersinia kristensenii ATCC 33638]
          Length = 318

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 585 SPETLASIEGISKKIACKIYNHFH 608
           S E +A++ GI +  A KIY  F 
Sbjct: 216 SIEQIAAVPGIGQVRAEKIYLQFQ 239


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPE 587
           D I G   +G    + L+  +G+++ +   S E
Sbjct: 189 DNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAE 221


>gi|227499749|ref|ZP_03929849.1| possible exodeoxyribonuclease V alpha subunit [Anaerococcus
           tetradius ATCC 35098]
 gi|227218135|gb|EEI83401.1| possible exodeoxyribonuclease V alpha subunit [Anaerococcus
           tetradius ATCC 35098]
          Length = 719

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIY 604
            + GIG      + ++FG  ++ ++ + + + L  +EGI KK    I 
Sbjct: 86  NLKGIGKKTAEAIYEAFGKDSIDLVYQ-NTDRLLEVEGIGKKKLEDIK 132


>gi|254172393|ref|ZP_04879068.1| glycoside hydrolase, family 57 [Thermococcus sp. AM4]
 gi|214033322|gb|EEB74149.1| glycoside hydrolase, family 57 [Thermococcus sp. AM4]
          Length = 696

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKK 598
           K+     L ++ GIGP     L ++   T   + R+  E LA    IS K
Sbjct: 638 KRPRLKRLIDVKGIGPKTLARLNRAGIKTPDDLLRADLEELAKKSRISIK 687


>gi|85373454|ref|YP_457516.1| hypothetical protein ELI_03135 [Erythrobacter litoralis HTCC2594]
 gi|84786537|gb|ABC62719.1| hypothetical protein ELI_03135 [Erythrobacter litoralis HTCC2594]
          Length = 94

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 12 VYQMLDIAGRVLYVGKAYNLQKRIKSY 38
          VY M +    VLYVG   ++  R+  +
Sbjct: 5  VYIMTNKRDGVLYVGVTADIAARVTQH 31


>gi|323450559|gb|EGB06440.1| hypothetical protein AURANDRAFT_29330 [Aureococcus anophagefferens]
          Length = 245

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 574 SFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
            F T + + R+  E L    G+  K   ++Y+ FH
Sbjct: 162 RFATFRDLLRAPVEELRDAPGLGDKKVARLYDAFH 196


>gi|320528322|ref|ZP_08029484.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204]
 gi|320131236|gb|EFW23804.1| Holliday junction DNA helicase RuvA [Solobacterium moorei F0204]
          Length = 198

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TV-KMISRSSPETLASIEGISKKIACKIYNHF 607
           KA +  L  + G+GP     +L   G  ++   I       L  + GI  K A +I    
Sbjct: 69  KALFLKLISVKGLGPKTAMGMLSKCGYQSIVSAIESGDVTLLKKMPGIGAKSASQIVLDL 128

Query: 608 HKNTSHTPT 616
                  PT
Sbjct: 129 KGKLVSVPT 137


>gi|303241148|ref|ZP_07327656.1| DNA repair protein RadC [Acetivibrio cellulolyticus CD2]
 gi|302591275|gb|EFL61015.1| DNA repair protein RadC [Acetivibrio cellulolyticus CD2]
          Length = 226

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 33/100 (33%)

Query: 544 THRKRRK-KAAYSPLDE--------------INGIGPLRKR------LLLQSFGTVKMIS 582
            HRKR K +     LD               I      RK        LL  +G++  + 
Sbjct: 4   GHRKRLKMRFLKDGLDSFEPHQVLELLLFYSIP-----RKDTNELAHELLSKYGSLSGVF 58

Query: 583 RSSPETLASIEGISKKIA-------CKIYNHFHKNTSHTP 615
            + P+ L+ I G+ +  A            +F+      P
Sbjct: 59  EADPKDLSQISGVGESTAFLLSLIPQLSRRYFNDKWGEKP 98


>gi|299143559|ref|ZP_07036639.1| helicase, RecD/TraA family [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518044|gb|EFI41783.1| helicase, RecD/TraA family [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 728

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKIYNHFHKN 610
           I  IG    + ++  F T    I     E L  ++GI  +   KI +   +N
Sbjct: 88  IPFIGEKTAKNIVDKFKTETLKILEEDTERLLEVDGIGPRKLDKIKSALLEN 139


>gi|229823990|ref|ZP_04450059.1| hypothetical protein GCWU000282_01294 [Catonella morbi ATCC 51271]
 gi|229786344|gb|EEP22458.1| hypothetical protein GCWU000282_01294 [Catonella morbi ATCC 51271]
          Length = 231

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIA 600
            +L  F  +  +  +S +   +I+GI    A
Sbjct: 54  AVLTHFRDLSELKSASLDQFEAIKGIGPVKA 84


>gi|169350138|ref|ZP_02867076.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552]
 gi|169292921|gb|EDS75054.1| hypothetical protein CLOSPI_00880 [Clostridium spiroforme DSM 1552]
          Length = 186

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNH 606
           K  +  L  + GIG      +L + G ++ I  +        L  I GI  K A +I   
Sbjct: 66  KEMFLKLILVKGIGCKTAIGILAT-GDLERIISAIETNDVNYLKKIPGIGPKAAKQIILD 124

Query: 607 FHKNTSHTP 615
                +  P
Sbjct: 125 LQGKFNDVP 133


>gi|15618236|ref|NP_224521.1| transcription elongation factor NusA [Chlamydophila pneumoniae
           CWL029]
 gi|15835851|ref|NP_300375.1| transcription elongation factor NusA [Chlamydophila pneumoniae
           J138]
 gi|16752722|ref|NP_444989.1| transcription elongation factor NusA [Chlamydophila pneumoniae
           AR39]
 gi|33241661|ref|NP_876602.1| transcription elongation factor NusA [Chlamydophila pneumoniae
           TW-183]
 gi|4376593|gb|AAD18465.1| N Utilization Protein A [Chlamydophila pneumoniae CWL029]
 gi|7189363|gb|AAF38280.1| N utilization substance protein A [Chlamydophila pneumoniae AR39]
 gi|8978690|dbj|BAA98526.1| N utilization protein A [Chlamydophila pneumoniae J138]
 gi|33236170|gb|AAP98259.1| transcription termination-antitermination factor [Chlamydophila
           pneumoniae TW-183]
          Length = 434

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           E+ GI  L  + L +   + T++ +  +S   LAS+ GIS ++A KI  
Sbjct: 369 EMEGISKLVIQNL-EHAGYDTIRRVLLASANDLASVPGISLELAYKILE 416


>gi|116754195|ref|YP_843313.1| DNA repair and recombination protein RadA [Methanosaeta thermophila
           PT]
 gi|116665646|gb|ABK14673.1| DNA repair and recombination protein RadA [Methanosaeta thermophila
           PT]
          Length = 322

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISK 597
           L+++ G+GP     L ++ F T++ ++ +SP  L +   + +
Sbjct: 4   LEDLPGVGPATAEKLREAGFTTIEAVAVASPGELVAAAEVGE 45


>gi|237741852|ref|ZP_04572333.1| DNA repair protein radC [Fusobacterium sp. 4_1_13]
 gi|229429500|gb|EEO39712.1| DNA repair protein radC [Fusobacterium sp. 4_1_13]
          Length = 232

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598
           + LL  F ++  I ++  + L +I+G+ K 
Sbjct: 49  KKLLNKFKSLDNIFKADFDKLFAIDGLGKN 78


>gi|167648016|ref|YP_001685679.1| excinuclease ABC subunit C [Caulobacter sp. K31]
 gi|167350446|gb|ABZ73181.1| Excinuclease ABC C subunit domain protein [Caulobacter sp. K31]
          Length = 130

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 12 VYQMLDIAGRVLYVGKAYNLQKRIKSY----MHSNNHTHRITHMISQINNIRFTVTCTEV 67
          VY M D    VLY G   +LQ R   +           H    ++       +  T  ++
Sbjct: 8  VYIMSDSRRGVLYAGVTSDLQTRAHQHRNGEFGGFTREHGCKSLV-------WFETHDDI 60

Query: 68 EALLLEANMIKRLK 81
          EA +    +IKR +
Sbjct: 61 EAAIRREKLIKRWR 74


>gi|296273177|ref|YP_003655808.1| RimK domain-containing protein ATP-grasp [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097351|gb|ADG93301.1| RimK domain protein ATP-grasp [Arcobacter nitrofigilis DSM 7299]
          Length = 499

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 14/49 (28%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKK 598
            L +I GIGP   + +L        F ++          L  +EGI K 
Sbjct: 446 VLKKIKGIGPKLAKNILDYRKKMTTFKSIN--------ELKELEGIGKN 486


>gi|305681206|ref|ZP_07404013.1| comEA protein [Corynebacterium matruchotii ATCC 14266]
 gi|305659411|gb|EFM48911.1| comEA protein [Corynebacterium matruchotii ATCC 14266]
          Length = 244

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 12/53 (22%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKIACKI 603
            L  + G+G    + ++           +     S + L  ++GI       I
Sbjct: 193 ELTTLTGVGEKTAQAIIAY-------RDAHGGFTSIDELQQVKGIGPAKFATI 238


>gi|160901964|ref|YP_001567545.1| phosphotransferase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160359608|gb|ABX31222.1| PHP domain protein [Petrotoga mobilis SJ95]
          Length = 570

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 559 EINGIGPLRKRLLLQSF--GTVKMISRSSPE-TLASIEGISKKIACKIYN 605
           +I G+GP + + L       TV  +  +  E  L  + G  +K   KI  
Sbjct: 95  KIPGLGPKKIKTLYDKLDIKTVGELEYACLENRLVELPGFGEKTQKKILE 144


>gi|52786250|ref|YP_092079.1| YqxK [Bacillus licheniformis ATCC 14580]
 gi|319645166|ref|ZP_07999399.1| YqxK protein [Bacillus sp. BT1B_CT2]
 gi|52348752|gb|AAU41386.1| YqxK [Bacillus licheniformis ATCC 14580]
 gi|317392975|gb|EFV73769.1| YqxK protein [Bacillus sp. BT1B_CT2]
          Length = 387

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 9/55 (16%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT----VKMISRSSPETLASIEGISKKIACKIYNH 606
           PL  I GIGP   + L ++FGT    +  +     +       I  + A  +   
Sbjct: 318 PLQLIPGIGPKTIQKLKEAFGTEMNILHRVKEGDLKE-----TIRPQTAELVIKA 367


>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
 gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
          Length = 952

 Score = 37.4 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + L+  FG+++ +  +  + L 
Sbjct: 192 DNIPGCPGVGEKTAQKLVAEFGSIENLL-AHTDQLK 226


>gi|319408552|emb|CBI82205.1| DNA repair protein RadC [Bartonella schoenbuchensis R1]
          Length = 264

 Score = 37.4 bits (85), Expect = 6.4,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + L++ FG++  +  +    L  + G     A
Sbjct: 88  KNLIERFGSLTDVLNADINLLQEVPGCGPATA 119


>gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
 gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
          Length = 949

 Score = 37.4 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLVSEFGSIENLLE 220


>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
          Length = 942

 Score = 37.4 bits (85), Expect = 6.5,   Method: Composition-based stats.
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            I G+G      L++ FG+++ +  
Sbjct: 200 GIPGVGEKTAIQLIKDFGSIENLLE 224


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
          Length = 880

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            + GIG      LL+ F ++  I  
Sbjct: 199 GVPGIGEKTAIKLLKQFDSIDEILN 223


>gi|300863596|ref|ZP_07108540.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Oscillatoria sp. PCC 6506]
 gi|300338395|emb|CBN53682.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Oscillatoria sp. PCC 6506]
          Length = 498

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 13/52 (25%)

Query: 556 PLDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACK 602
            L+ + G+GP   + ++ +     F ++        E L  + G+ KK+  +
Sbjct: 448 ELETLPGVGPKLAQKIIAARKQQPFSSL--------EDLDRVPGVGKKMLER 491


>gi|299769122|ref|YP_003731148.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1]
 gi|298699210|gb|ADI89775.1| Holliday junction DNA helicase RuvA [Acinetobacter sp. DR1]
          Length = 199

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSSPETLASIEGISKKIACKI--- 603
           K  +  L ++NG+GP     +L +  +V+     I      TL  + G+ KK A ++   
Sbjct: 68  KIIFRTLLKVNGVGPKMALGILSTL-SVELLVHTIEHDDINTLIKVPGVGKKTAERLMIE 126

Query: 604 ----YNHFHKNTSHTPT 616
               +    + TS T T
Sbjct: 127 LRDRFKTLAQGTSSTTT 143


>gi|307726755|ref|YP_003909968.1| PHP domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307587280|gb|ADN60677.1| PHP domain protein [Burkholderia sp. CCGE1003]
          Length = 580

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 547 KRRKK--AAYSPLDEINGIGPLRKRLL-----LQSFGTVKMISRSSPETLASIEGISKKI 599
           + RK   AA + L +I G+GP R R L     +Q+   +     +    +  + G  +K 
Sbjct: 84  RLRKTLPAAITELLQIPGLGPKRVRALHEALDIQTLEDLD--RAARQGRIRLLPGFGEKT 141

Query: 600 ACKIYN 605
             +I  
Sbjct: 142 EQRIIE 147


>gi|262278158|ref|ZP_06055943.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258509|gb|EEY77242.1| Holliday junction helicase subunit A [Acinetobacter calcoaceticus
           RUH2202]
          Length = 199

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVK----MISRSSPETLASIEGISKKIACKI--- 603
           K  +  L ++NG+GP     +L +  +V+     I      TL  + G+ KK A ++   
Sbjct: 68  KIIFRTLLKVNGVGPKMALGILSTL-SVELLVHTIEHDDINTLIKVPGVGKKTAERLMIE 126

Query: 604 ----YNHFHKNTSHTPT 616
               +    + TS T T
Sbjct: 127 LRDRFKTLAQGTSSTTT 143


>gi|225848762|ref|YP_002728926.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644290|gb|ACN99340.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 582

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 8/60 (13%)

Query: 556 PLDEINGIGPLRKRLLLQSFGT-----VKMISRS---SPETLASIEGISKKIACKIYNHF 607
            L EI GIG   +  +++   T      + + +        L  + G   K   +IY   
Sbjct: 54  KLSEIRGIGTHTQEKIIEYIKTGKIQKYEELKKLVPPDFLELMDVPGFGPKTLKRIYQEL 113


>gi|225550545|ref|ZP_03771494.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225379699|gb|EEH02061.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 673

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   + L + F T+  +  ++   L +++   +K A  + N F+ +
Sbjct: 515 GIRHVGPNLAKKLAKQFKTMTTLMHANFGELTNVDACGEKAALSLINWFNDD 566


>gi|56964044|ref|YP_175775.1| Smf family DNA processing protein [Bacillus clausii KSM-K16]
 gi|56910287|dbj|BAD64814.1| Smf family DNA processing protein [Bacillus clausii KSM-K16]
          Length = 303

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSH 613
           +++    +SP  +A+  GI++K A   + H HK T  
Sbjct: 33  SLQAPYHASPLEIAAKLGINEKSATAFWRHLHKTTPE 69


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLVAQFGSIENLLE 220


>gi|291165660|gb|EFE27709.1| helicase, RecD/TraA family [Filifactor alocis ATCC 35896]
          Length = 754

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIE--GISKKIACKIYNHFHKNTSH 613
            L EI GIG  + + +++S+   + +  +    +      G++  +A KIY ++ +    
Sbjct: 123 KLLEIEGIGKKKCQKIIESYKDKRDLKVA----ILHFSGYGLTPAMAMKIYRYYGEKAKE 178


>gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2]
 gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2]
 gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2]
          Length = 949

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLVSEFGSIENLLE 220


>gi|185178794|ref|ZP_02554752.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188024241|ref|ZP_02569990.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188518556|ref|ZP_03004016.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|209554205|ref|YP_002284543.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225551582|ref|ZP_03772528.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|254781448|sp|B5ZAV3|DNLJ_UREU1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|184209414|gb|EDU06457.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188018900|gb|EDU56940.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188997873|gb|EDU66970.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|209541706|gb|ACI59935.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225379397|gb|EEH01762.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
          Length = 673

 Score = 37.4 bits (85), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
            I  +GP   + L + F T+  +  ++   L +++   +K A  + N F+ +
Sbjct: 515 GIRHVGPNLAKKLAKQFKTMTTLMHANFGELTNVDACGEKAALSLINWFNDD 566


>gi|332981757|ref|YP_004463198.1| DNA polymerase I [Mahella australiensis 50-1 BON]
 gi|332699435|gb|AEE96376.1| DNA polymerase I [Mahella australiensis 50-1 BON]
          Length = 850

 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            + GIG      L++ FG+++ +  
Sbjct: 192 GVPGIGEKTALRLIKQFGSLESVLE 216


>gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
 gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
          Length = 876

 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            I GIG      LL+ +GTV+ +  ++ + L 
Sbjct: 197 GIPGIGEKTALKLLEEYGTVENVI-ANEDKLK 227


>gi|311895992|dbj|BAJ28400.1| putative DNA-binding protein [Kitasatospora setae KM-6054]
          Length = 381

 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 12/48 (25%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKK 598
            LD + G+GP   + +LQ          +     S + L  + GI  +
Sbjct: 330 QLDSLPGVGPALAQRILQY-------RLAHGPFQSLDQLRHVPGIGPR 370


>gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
 gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
          Length = 882

 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 7/40 (17%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK 598
            + GIG      L++ +G+++ +       L  ++ I++K
Sbjct: 194 GVPGIGEKTAIKLIKEYGSIENL-------LDQVDQITQK 226


>gi|229062026|ref|ZP_04199351.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus AH603]
 gi|228717178|gb|EEL68853.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus AH603]
          Length = 199

 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L++I GIG  +   +L+     G  + I     E L  I+GI  K   KI +
Sbjct: 143 ASKEQLEKITGIGSRKAESILKYREEHGPFQKI-----EDLLEIDGIGAKSLEKIKD 194


>gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1]
 gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1]
          Length = 895

 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L  + G+G      LL+ F T++ I         +I+ IS K+  K+ N
Sbjct: 195 LKGVEGVGEKTAIKLLKEFQTIEGIYE-------NIDSISGKLQEKLIN 236


>gi|262037552|ref|ZP_06011011.1| DNA integrity scanning protein DisA [Leptotrichia goodfellowii
           F0264]
 gi|261748482|gb|EEY35862.1| DNA integrity scanning protein DisA [Leptotrichia goodfellowii
           F0264]
          Length = 356

 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 565 PLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
                +L+  F  ++ I  ++ E +  I+GISK  A  I    
Sbjct: 302 KKDIEMLVSEFKEIQSILIATVEEMTQIKGISKLKAEHINKAL 344


>gi|253681145|ref|ZP_04861948.1| helicase, RecD/TraA family [Clostridium botulinum D str. 1873]
 gi|253562994|gb|EES92440.1| helicase, RecD/TraA family [Clostridium botulinum D str. 1873]
          Length = 739

 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I+GIGP+  + +++ F   T++ I  ++ + L  I+GI  K    I
Sbjct: 88  ISGIGPVTAKKIVEYFKEETLE-ILDNNIDRLKEIDGIGSKKVDTI 132


>gi|18310930|ref|NP_562864.1| Holliday junction DNA helicase motor protein [Clostridium
           perfringens str. 13]
 gi|168208649|ref|ZP_02634274.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214131|ref|ZP_02639756.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE
           str. F4969]
 gi|168215574|ref|ZP_02641199.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC
           8239]
 gi|169343575|ref|ZP_02864574.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str.
           JGS1495]
 gi|20455244|sp|Q8XJ13|RUVA_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|18145612|dbj|BAB81654.1| holliday junction DNA helicase [Clostridium perfringens str. 13]
 gi|169298135|gb|EDS80225.1| holliday junction DNA helicase RuvA [Clostridium perfringens C str.
           JGS1495]
 gi|170713198|gb|EDT25380.1| holliday junction DNA helicase RuvA [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714360|gb|EDT26542.1| holliday junction DNA helicase RuvA [Clostridium perfringens CPE
           str. F4969]
 gi|182381996|gb|EDT79475.1| holliday junction DNA helicase RuvA [Clostridium perfringens NCTC
           8239]
          Length = 201

 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI----YNHFH 608
           L  ING+G      LL    TV  +  +      + +    GI KK A +I     +   
Sbjct: 75  LLSINGVGAKAALSLLS-ISTVNNLKYAIMMGDEKHITRAPGIGKKTAQRIILELKDKLK 133

Query: 609 KNT 611
            + 
Sbjct: 134 PDE 136


>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
 gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
          Length = 945

 Score = 37.4 bits (85), Expect = 6.7,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    +  L  FG+++ +  ++ + L 
Sbjct: 192 DNIPGLPGVGEKTAKKFLAQFGSMEGLL-ANTDQLK 226


>gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM
           22836]
          Length = 933

 Score = 37.4 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +GP   + LL+ +GT++ +  
Sbjct: 189 DNIPGCPGVGPKTAQKLLEEYGTIENLLE 217


>gi|257066251|ref|YP_003152507.1| helicase, RecD/TraA family [Anaerococcus prevotii DSM 20548]
 gi|256798131|gb|ACV28786.1| helicase, RecD/TraA family [Anaerococcus prevotii DSM 20548]
          Length = 719

 Score = 37.4 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKIY 604
            + GIG    R +   FG  +V ++    P+ L  ++GI KK    I 
Sbjct: 86  NLKGIGKKTARAIFDVFGKDSVDIVYN-DPDKLLRVDGIGKKKLEDIK 132


>gi|223886358|gb|ACN22637.1| hypothetical protein [uncultured bacterium]
          Length = 121

 Score = 37.4 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 19/91 (20%)

Query: 11  GVYQMLDIAGRVLYVGKAYNL-----QKRIKSYMHSN---NHTHRITHMISQINNIRFTV 62
           G+Y+ + +   V+Y+GKA  L     +KR++ Y  S+    +      M S  +N+   +
Sbjct: 28  GIYRAI-LNDEVVYIGKATELENGGFRKRLRDYTRSSTSARNYPAGELMHSNRDNLHIEI 86

Query: 63  TCTE--------VEALLLEANMIKRLKPRFN 85
              E        +E+  LE  +I+ +KP +N
Sbjct: 87  VLFERTLESIPKIES--LETQLIREMKPTWN 115


>gi|77409645|ref|ZP_00786317.1| competence protein CelA [Streptococcus agalactiae COH1]
 gi|77171745|gb|EAO74942.1| competence protein CelA [Streptococcus agalactiae COH1]
          Length = 206

 Score = 37.4 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 6/38 (15%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMIS 582
           KA  S L  I+G+G  R + +L        F T+  + 
Sbjct: 160 KADLSSLQTISGVGAKRAQDILDYRDSQGGFKTIDDLK 197


>gi|75759952|ref|ZP_00740021.1| DNA repair protein radC [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74492549|gb|EAO55696.1| DNA repair protein radC [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 205

 Score = 37.4 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI GI    A ++   F
Sbjct: 50  KILHQFDGLRMLKDATLEELISIHGIGISKASQLMAAF 87


>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
 gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
          Length = 928

 Score = 37.4 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMI 581
           D I G   +G    + LL+ FG+++ +
Sbjct: 193 DNIPGCPGVGIKTAQKLLKEFGSIENL 219


>gi|323142220|ref|ZP_08077054.1| helicase, RecD/TraA family [Phascolarctobacterium sp. YIT 12067]
 gi|322413283|gb|EFY04168.1| helicase, RecD/TraA family [Phascolarctobacterium sp. YIT 12067]
          Length = 721

 Score = 37.4 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFGTVK-MISRSSPETLASIEGISKKIACKI 603
           + G+GP+    ++++FGT    I  S PE LA + GIS K A  I
Sbjct: 89  VKGVGPVTAARIVEAFGTDTLEILGSYPERLAQVRGISAKKAAAI 133


>gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 886

 Score = 37.4 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLAS 591
           D   G   IG      L++ FG+V+ I   + + L  
Sbjct: 192 DNYPGVTKIGEKTAIKLVKQFGSVEGIYE-NIDELKK 227


>gi|15606735|ref|NP_214115.1| DNA polymerase I [Aquifex aeolicus VF5]
 gi|17366200|sp|O67550|EX53_AQUAE RecName: Full=5'-3' exonuclease
 gi|2983968|gb|AAC07515.1| DNA polymerase I 3'-5' exo domain [Aquifex aeolicus VF5]
          Length = 289

 Score = 37.4 bits (85), Expect = 6.8,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            I G+GP     +L+ +G+V+ I +
Sbjct: 187 GIEGVGPKTAINILKKYGSVENILK 211


>gi|288555342|ref|YP_003427277.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4]
 gi|288546502|gb|ADC50385.1| Holliday junction DNA helicase RuvA [Bacillus pseudofirmus OF4]
          Length = 205

 Score = 37.4 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 547 KRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACK 602
            + ++A +  L  ++GIGP     +L S G  + + R+  E     L    G+ KK A +
Sbjct: 64  SKSERALFEKLLNVSGIGPKGALAILAS-GQPEHVVRAIEEEDEAFLVKFPGVGKKTARQ 122

Query: 603 I 603
           I
Sbjct: 123 I 123


>gi|170111659|ref|XP_001887033.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|317374862|sp|B0DSN9|FEN11_LACBS RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
           Full=Flap structure-specific endonuclease 1-A
 gi|164638076|gb|EDR02356.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 394

 Score = 37.4 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMI 581
           L+ I G+GP     L++ +G +K +
Sbjct: 236 LEPIKGVGPKSALKLIREYGGLKGV 260


>gi|152990842|ref|YP_001356564.1| Holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2]
 gi|166230575|sp|A6Q3Z8|RUVA_NITSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|151422703|dbj|BAF70207.1| holliday junction DNA helicase RuvA [Nitratiruptor sp. SB155-2]
          Length = 184

 Score = 37.4 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGT---VKMISRSSPETLASIEGISKKIACKIY 604
           K  +  L ++NG+GP     +  +F     V+++ + +   L  + GI  K A +I 
Sbjct: 67  KKMFDRLIKLNGVGPKVAIAICSTFKPQEFVQIVQQKNVAMLKKVPGIGPKSAQRIL 123


>gi|222055319|ref|YP_002537681.1| hypothetical protein Geob_2226 [Geobacter sp. FRC-32]
 gi|221564608|gb|ACM20580.1| hypothetical protein Geob_2226 [Geobacter sp. FRC-32]
          Length = 206

 Score = 37.4 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 4  EQMPECPGVYQMLDIAGRVLYVGKAYNL----QKRIK 36
          + +P   G+Y +    G++ YVGKA N+    + R+K
Sbjct: 59 DGLPTDAGIYFIY-SHGKLWYVGKAENINARFKNRLK 94


>gi|315282388|ref|ZP_07870810.1| ComE operon protein 1 [Listeria marthii FSL S4-120]
 gi|313613970|gb|EFR87692.1| ComE operon protein 1 [Listeria marthii FSL S4-120]
          Length = 200

 Score = 37.4 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 14/62 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L ++ GIG  +   +++       F T+          L ++ GI +K   K+  
Sbjct: 144 ATKVDLQQVPGIGDSKATAIIEYREKEGLFQTIG--------DLKNVSGIGEKTVEKLKE 195

Query: 606 HF 607
             
Sbjct: 196 FL 197


>gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 884

 Score = 37.4 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            I G+G      LL  +G+V+ +     + L 
Sbjct: 191 GIPGVGEKTALKLLHEYGSVESVLE-HADELK 221


>gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
 gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
          Length = 949

 Score = 37.4 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   +G    + L+  FG+++ +  
Sbjct: 192 DNIPGCPGVGEKTAQKLVSEFGSIENLLE 220


>gi|91793909|ref|YP_563560.1| exonuclease IX [Shewanella denitrificans OS217]
 gi|123356631|sp|Q12L39|XNI_SHEDO RecName: Full=Protein Xni
 gi|91715911|gb|ABE55837.1| 5'-3' exonuclease [Shewanella denitrificans OS217]
          Length = 252

 Score = 37.4 bits (85), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            I GIGP     LL  F T+  I         S++ +  K A K+
Sbjct: 182 GIAGIGPKSAADLLNKFRTLANIYN-------SLDNLGAKQAQKL 219


>gi|289549356|ref|YP_003474344.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182973|gb|ADC90217.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 574

 Score = 37.4 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 8/56 (14%)

Query: 560 INGIGPLRKRLLLQSFGT-----VKMISRSSPETLAS---IEGISKKIACKIYNHF 607
           I GIGP     +L+   T      + +    PE L     + GI  K     Y+  
Sbjct: 57  IPGIGPSSVEKILEYLRTGKISKYEELKEKVPEDLLELLDVPGIGPKTLKLAYDKL 112


>gi|68171315|ref|ZP_00544714.1| DNA repair protein RadC [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658430|ref|YP_507183.1| DNA repair protein RadC [Ehrlichia chaffeensis str. Arkansas]
 gi|67999266|gb|EAM85917.1| DNA repair protein RadC [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599887|gb|ABD45356.1| DNA repair protein RadC [Ehrlichia chaffeensis str. Arkansas]
          Length = 230

 Score = 37.4 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIACKIY 604
           + L++ FGT   +  +    L  I GI +     I+
Sbjct: 54  KKLIEHFGTFAKVFFADYSQLKQISGIGEVAISAIF 89


>gi|182624414|ref|ZP_02952198.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str.
           JGS1721]
 gi|177910417|gb|EDT72794.1| holliday junction DNA helicase RuvA [Clostridium perfringens D str.
           JGS1721]
          Length = 201

 Score = 37.4 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI----YNHFH 608
           L  ING+G      LL    TV  +  +      + +    GI KK A +I     +   
Sbjct: 75  LLSINGVGAKAALSLLS-ISTVNNLKYAIMMGDEKHITRAPGIGKKTAQRIILELKDKLK 133

Query: 609 KNT 611
            + 
Sbjct: 134 PDE 136


>gi|229135153|ref|ZP_04263953.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus BDRD-ST196]
 gi|228648281|gb|EEL04316.1| Competence protein ComEA helix-hairpin-helix repeat protein
           [Bacillus cereus BDRD-ST196]
          Length = 199

 Score = 37.4 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS---FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A+   L++I GIG  +   +L+     G  + I     E L  I+GI  K   KI +
Sbjct: 143 ASKEQLEKITGIGSRKAESILKYREEHGPFQKI-----EDLLEIDGIGAKSLEKIKD 194


>gi|193213888|ref|YP_001995087.1| helix-hairpin-helix motif [Chloroherpeton thalassium ATCC 35110]
 gi|193087365|gb|ACF12640.1| helix-hairpin-helix motif [Chloroherpeton thalassium ATCC 35110]
          Length = 166

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 539 RFA--ITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           RFA  +  +     +A    L ++ GIGP+    L++ F   K     +   L  ++GI 
Sbjct: 99  RFAGKLNYN-----EATEEELIDVPGIGPVMAERLVR-FRAYKGGRVETLNALLEVKGIG 152

Query: 597 KKIACKIYNHFH 608
           +K   ++ N+  
Sbjct: 153 QKKLGQLKNYLK 164


>gi|167624496|ref|YP_001674790.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
 gi|190359286|sp|B0TKB2|DNLJ_SHEHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|167354518|gb|ABZ77131.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
          Length = 667

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 18/45 (40%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G      L   F T+  +  ++ ET   ++ +   +A  + +  
Sbjct: 519 VGEATAANLAAYFKTLDALKAANEETFIKVDDVGTIVAAHLAHFL 563


>gi|110800505|ref|YP_696628.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC
           13124]
 gi|123148615|sp|Q0TP12|RUVA_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110675152|gb|ABG84139.1| Holliday junction DNA helicase RuvA [Clostridium perfringens ATCC
           13124]
          Length = 201

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI----YNHFH 608
           L  ING+G      LL    TV  +  +      + +    GI KK A +I     +   
Sbjct: 75  LLSINGVGAKAALSLLS-ISTVNNLKYAIMMGDEKHITRAPGIGKKTAQRIILELKDKLK 133

Query: 609 KNT 611
            + 
Sbjct: 134 PDE 136


>gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 908

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            I G+G      LL  +G+V+ +     + L 
Sbjct: 215 GIPGVGEKTALKLLHEYGSVESVLE-HADELK 245


>gi|75911053|ref|YP_325349.1| phospholipase D/transphosphatidylase [Anabaena variabilis ATCC
           29413]
 gi|75704778|gb|ABA24454.1| Phospholipase D/Transphosphatidylase [Anabaena variabilis ATCC
           29413]
          Length = 528

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 13/52 (25%)

Query: 556 PLDEINGIGPLRKRLLL-----QSFGTVKMISRSSPETLASIEGISKKIACK 602
            L+ + G+G    + ++     + F         S + L  + GIS K+   
Sbjct: 478 ELETLPGVGKKLAQKIITARQQRKF--------VSSQDLDKVPGISPKMIEN 521


>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 875

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL+ F TV+ + + S + ++      KK+  K+
Sbjct: 192 GVPGVGEKTALKLLKEFETVENVLK-SIDQVS-----GKKLKEKL 230


>gi|54023349|ref|YP_117591.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54014857|dbj|BAD56227.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 532

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKK-IAC 601
           A  + LD + G+GP+  R +L  + T      +  + LA ++GI    +A 
Sbjct: 477 ATEAQLDALPGVGPVTARAILA-WRTANGRFTA-VDQLAEVDGIGPARLAR 525


>gi|15894524|ref|NP_347873.1| DNA repair protein RadC [Clostridium acetobutylicum ATCC 824]
 gi|25009038|sp|Q97JN2|Y1241_CLOAB RecName: Full=UPF0758 protein CA_C1241
 gi|15024167|gb|AAK79213.1|AE007637_3 RadC protein ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325508656|gb|ADZ20292.1| DNA repair protein RadC [Clostridium acetobutylicum EA 2018]
          Length = 229

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN 605
            +L+  G +  +   S E L  ++GI    A +I  
Sbjct: 54  RILKESGGLNGVLNLSFEELKKVKGIGNAKAVQILA 89


>gi|317502789|ref|ZP_07960895.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315666100|gb|EFV05661.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 161

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 18  IAGRVLYVGKAYNLQKRIKSYMH 40
               ++Y+GK  +L+ R+ SY+ 
Sbjct: 78  SNEAIVYIGKGKSLKTRLSSYLR 100


>gi|223365736|pdb|2W9M|A Chain A, Structure Of Family X Dna Polymerase From Deinococcus
           Radiodurans
 gi|223365737|pdb|2W9M|B Chain B, Structure Of Family X Dna Polymerase From Deinococcus
           Radiodurans
          Length = 578

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 560 INGIGPLRKRLL-LQSFGTVKMISRSSPE-TLASIEGISKKIACKIYN 605
           + G+GP + R L L    +++ +  ++    LA ++G   K A  I  
Sbjct: 102 VRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILE 149


>gi|209549111|ref|YP_002281028.1| DNA repair protein RadC [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226736629|sp|B5ZMI0|Y1511_RHILW RecName: Full=UPF0758 protein Rleg2_1511
 gi|209534867|gb|ACI54802.1| DNA repair protein RadC [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 275

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 18/32 (56%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKKIA 600
           + L++ FG++  +  +    L  ++G+ + +A
Sbjct: 99  KALIERFGSLAGVFGAPAALLTEVKGVGEAVA 130


>gi|166157038|emb|CAO79495.1| putative 5'-3' exonuclease [uncultured candidate division WWE3
           bacterium EJ0ADIGA11YD11]
          Length = 306

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           D I G+   G +    LLQ +G+++ I R + E +       + +  K+   +
Sbjct: 186 DNIPGVFGVGEVTATKLLQKYGSLEEIYR-NIEKIE-----PESLKKKLLESY 232


>gi|15805494|ref|NP_294190.1| hypothetical protein DR_0467 [Deinococcus radiodurans R1]
 gi|6458154|gb|AAF10047.1|AE001906_3 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 572

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 560 INGIGPLRKRLL-LQSFGTVKMISRSSPE-TLASIEGISKKIACKIYN 605
           + G+GP + R L L    +++ +  ++    LA ++G   K A  I  
Sbjct: 102 VRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILE 149


>gi|99080834|ref|YP_612988.1| helix-hairpin-helix DNA-binding, class 1 [Ruegeria sp. TM1040]
 gi|99037114|gb|ABF63726.1| hypothetical protein TM1040_0993 [Ruegeria sp. TM1040]
          Length = 219

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 555 SPLDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           +P+  + G+GP   + L      +V+ ++  S   L ++  +    A ++   
Sbjct: 2   TPILRLPGVGPALAKALQDHGIRSVEDVAARSEAELTAVPRLGVARAQRLKAA 54


>gi|239827789|ref|YP_002950413.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. WCH70]
 gi|239808082|gb|ACS25147.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. WCH70]
          Length = 204

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 14/58 (24%)

Query: 556 PLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + ++ GIGP +   ++        F       ++  E L ++ GI +K   KI  H 
Sbjct: 152 EILQLPGIGPTKAAAIIAYREEHGPF------QKA--EDLLNVTGIGEKTLEKIKEHI 201


>gi|1053138|gb|AAA80685.1| excision exonuclease ABC subunit C [Synechocystis sp. PCC 6803]
          Length = 53

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 374 ALPHIPKRIEIYDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQD 426
            L  +PKRIE YD SHI G + V   VV  +    +  YR + +    +K   
Sbjct: 1   NLETLPKRIEGYDISHIQGSNRVASQVVFIDKVPAQQYYRHYKIKNPSIKVGH 53


>gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551]
 gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551]
          Length = 875

 Score = 37.4 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            + G+G      LL+ F TV+ + + S + ++      KK+  K+
Sbjct: 192 GVPGVGEKTALKLLKEFETVENVLK-SIDQVS-----GKKLKEKL 230


>gi|291548500|emb|CBL21608.1| helicase, putative, RecD/TraA family [Ruminococcus sp. SR1/5]
          Length = 757

 Score = 37.4 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 560 INGIGPLRKRLLLQSFGT-VKMISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ FG     I    PE LA I+GIS+K A +I
Sbjct: 91  IKGIGAALAARIVRRFGDDTMRIVEEEPERLAEIKGISEKKAMEI 135


>gi|322420882|ref|YP_004200105.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18]
 gi|320127269|gb|ADW14829.1| Holliday junction DNA helicase RuvA [Geobacter sp. M18]
          Length = 199

 Score = 37.4 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 541 AIT--THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGT-----VKMISRSSPETLASIE 593
           AI     R +++K  +  L  ++G+GP     +L +  +      + +       L++I 
Sbjct: 57  AINLYGFRTQQEKELFQLLIGVSGVGPKLANSILSN--SEPAELAESLVSGDLARLSAIP 114

Query: 594 GISKKIACKIYNHFHK 609
           GI KK A ++     +
Sbjct: 115 GIGKKTAERLVLELKE 130


>gi|304438871|ref|ZP_07398794.1| RecD/TraA family helicase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372537|gb|EFM26120.1| RecD/TraA family helicase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 734

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISK 597
           I  IG    + +   FG  T K I   +PE L  +EGI  
Sbjct: 88  IPYIGEKTAKSIYDKFGMETFK-ILEETPERLKEVEGIGP 126


>gi|299144371|ref|ZP_07037451.1| competence protein [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518856|gb|EFI42595.1| competence protein [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 196

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 13/54 (24%)

Query: 557 LDEINGIGPLRKRLLLQS-----FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L  + G+G    + ++       F  +        E + S+ G  +K    I  
Sbjct: 146 LTSLPGVGEKTAKKIIDYRTKNQFKNI--------EDIKSVSGFGEKKFNAIKE 191


>gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 838

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISR 583
           D I G   IG      L++ +G+++ I +
Sbjct: 184 DNIPGVKGIGEKTAANLIKRYGSIENILK 212


>gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
 gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
          Length = 873

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG-----------ISKKIACKIYN 605
            I G+G      LL+ + T++ ++    + L    G           +SKKIA  I +
Sbjct: 197 GIPGVGEKTALKLLKQYHTIENLND-HLDELKGKMGEKIRDNIDQGLLSKKIATIIKD 253


>gi|166215834|sp|Q18E49|DNLJ_HALWD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
          Length = 736

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 554 YSPLDEINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            S LD I+G+G  R   L++S   G +  +   S   L+ ++G     A  +      + 
Sbjct: 504 RSALD-IDGLGEQRVEQLVESGVIGELADLYTLSVADLSKLDGWGTTSAENLIQAI--SE 560

Query: 612 SHTPT 616
           + TP+
Sbjct: 561 TQTPS 565


>gi|110669547|ref|YP_659358.1| NAD-dependent DNA ligase LigA [Haloquadratum walsbyi DSM 16790]
 gi|109627294|emb|CAJ53784.1| DNA ligase (NAD) [Haloquadratum walsbyi DSM 16790]
          Length = 770

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 554 YSPLDEINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
            S LD I+G+G  R   L++S   G +  +   S   L+ ++G     A  +      + 
Sbjct: 538 RSALD-IDGLGEQRVEQLVESGVIGELADLYTLSVADLSKLDGWGTTSAENLIQAI--SE 594

Query: 612 SHTPT 616
           + TP+
Sbjct: 595 TQTPS 599


>gi|329959979|ref|ZP_08298475.1| DNA ligase [Bacteroides fluxus YIT 12057]
 gi|328533113|gb|EGF59882.1| DNA ligase [Bacteroides fluxus YIT 12057]
          Length = 665

 Score = 37.4 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           +G    + + +SF  ++ +  +  E L +I+ I +KIA  I  +F
Sbjct: 515 VGETVAKKIAKSFTDIEELINTDLENLKNIDEIGEKIAQSIITYF 559


>gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
 gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
          Length = 920

 Score = 37.4 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            G+G      L+  FG++  + R + + + 
Sbjct: 194 PGVGEKTAAKLINQFGSIDNLLRHT-DEIK 222


>gi|110801789|ref|YP_699225.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101]
 gi|122956588|sp|Q0SRN2|RUVA_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|110682290|gb|ABG85660.1| Holliday junction DNA helicase RuvA [Clostridium perfringens SM101]
          Length = 201

 Score = 37.4 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI----YNHFH 608
           L  ING+G      LL    TV  +  +      + +    GI KK A +I     +   
Sbjct: 75  LLSINGVGAKAALSLLS-ISTVNNLKYAIMMGDEKHITRAPGIGKKTAQRIILELKDKLK 133

Query: 609 KNT 611
            + 
Sbjct: 134 PDE 136


>gi|86141090|ref|ZP_01059649.1| Smf protein DNA processing chain A [Leeuwenhoekiella blandensis
           MED217]
 gi|85833032|gb|EAQ51481.1| Smf protein DNA processing chain A [Leeuwenhoekiella blandensis
           MED217]
          Length = 366

 Score = 37.4 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610
           L  I  +G    + L+  F + + +     E+L  ++GI      K+   F K 
Sbjct: 12  LQRIPKLGDTSIKRLIARFESAQNLLSQKMESLLKLDGIGT---LKLKEFFEKE 62


>gi|225352127|ref|ZP_03743150.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157374|gb|EEG70713.1| hypothetical protein BIFPSEUDO_03742 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 205

 Score = 37.4 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 541 AIT--THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTV--KMISRS----SPETLASI 592
           AIT         K  +  L +++GIGP     LL    T+  + ++++        LA  
Sbjct: 56  AITLYGFSSLASKRMFLQLQKVSGIGPKVALSLLS---TLPPERLAKAVADGDATALAKA 112

Query: 593 EGISKKIACKIYNHFHKNTS 612
            G+ KK A KI      +  
Sbjct: 113 PGLGKKGAQKIILELKGSID 132


>gi|58578620|ref|YP_203310.1| orf376 [Rhizopus oryzae]
 gi|57339007|gb|AAW49477.1| orf376 [Rhizopus oryzae]
          Length = 376

 Score = 37.4 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 14/98 (14%)

Query: 1   MSSEQMPECPGVYQML-DIAGRVLYVGKAYNLQKRIK-----SYMHSNNHTHRITHMISQ 54
           + S+Q+    G+Y       G  +YVG A +L+ R       SY+ +  H   I  M   
Sbjct: 154 IISKQLNNRSGIYCWYCKPTGN-MYVGSAVDLKARTSDYYQFSYIKNRKHLPIIRAMQK- 211

Query: 55  INNIR----FTVTCTEVEALLL-EANMIKRLKPRFNIL 87
              +       +     ++L+  E   I  + P +NIL
Sbjct: 212 -YGMDQFCLIILEFNNKQSLIRSEQYWIDFITPSYNIL 248


>gi|328776660|ref|XP_623717.3| PREDICTED: DNA excision repair protein ERCC-1 [Apis mellifera]
          Length = 255

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL +FGT+  + ++   TLA   GI  + A +I+   H+
Sbjct: 207 LLSTFGTLSELIKTQSNTLALCPGIGLQKAERIHKTLHE 245


>gi|325295513|ref|YP_004282027.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065961|gb|ADY73968.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 188

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKMISR----SSPETLASIEGISKKIACKI 603
            L +I  +G      ++  F ++  +         +TL+++ G+ KK++ ++
Sbjct: 74  ELLKIPKVGSKVAMSVISHF-SLDELRNIVSTKDVKTLSTVPGLGKKLSERV 124


>gi|300853933|ref|YP_003778917.1| putative DNA-binding competence protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434048|gb|ADK13815.1| predicted DNA-binding competence protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 205

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 14/61 (22%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIY 604
           KA+   L  I+G+G +  + ++        F ++        E L  +  I  K   KI 
Sbjct: 148 KASKEELKTISGVGDVTAQKIIDYREKNGNFSSI--------EDLKKVGRIGDKTIEKIK 199

Query: 605 N 605
           +
Sbjct: 200 D 200


>gi|298252531|ref|ZP_06976325.1| DNA uptake protein [Gardnerella vaginalis 5-1]
 gi|297532895|gb|EFH71779.1| DNA uptake protein [Gardnerella vaginalis 5-1]
          Length = 273

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 18/65 (27%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQ------SFGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L+ + GIGP     ++        F ++        E L  I+GI  K      N
Sbjct: 217 ATLDQLETLKGIGPKTAARIIAQRKRVGYFRSL--------EDLMQIKGIGSKT----LN 264

Query: 606 HFHKN 610
            F  N
Sbjct: 265 KFRGN 269


>gi|323341472|ref|ZP_08081713.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           ruminis ATCC 25644]
 gi|323091083|gb|EFZ33714.1| crossover junction ATP-dependent DNA helicase RuvA [Lactobacillus
           ruminis ATCC 25644]
          Length = 203

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 551 KAAYSPLDEINGIGPLRKRLLL---QSFGTVKMISRSSPETLASIEGISKKIACKI 603
           K  +  L  ++GIGP     +L      G V  ++      L    GI KK A +I
Sbjct: 68  KQLFLKLISVSGIGPKSALAILANEDHNGFVSAVNNDDDAYLTKFPGIGKKTAKQI 123


>gi|42527046|ref|NP_972144.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405]
 gi|81412203|sp|Q73MH0|DNLJ_TREDE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|41817470|gb|AAS12055.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405]
          Length = 645

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 577 TVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           ++  +   + E LA+I+ + K  A K+Y   H
Sbjct: 444 SITDLYTLTVEELAAIDRMGKLSAEKVYKALH 475


>gi|6685961|sp|Q9ZNJ6|RUVA_CLOHI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|3892649|dbj|BAA34545.1| ruvA [Clostridium histolyticum]
          Length = 197

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 553 AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI 603
            ++ L  +NGIG      LL     V+ + R+        L    GI KK A +I
Sbjct: 71  LFNKLLTVNGIGAKASLSLLS-ITNVENLKRAIVLEDEKLLIKAPGIGKKTAQRI 124


>gi|315282469|ref|ZP_07870876.1| putative DNA repair protein [Listeria marthii FSL S4-120]
 gi|313613887|gb|EFR87624.1| putative DNA repair protein [Listeria marthii FSL S4-120]
          Length = 224

 Score = 37.4 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            ++  F  V  +  +S E    + GI    A KI
Sbjct: 49  RIIMKFKNVAEMQYASIEEFQLVNGIGIAKASKI 82


>gi|83954051|ref|ZP_00962771.1| DNA topoisomerase IV subunit B [Sulfitobacter sp. NAS-14.1]
 gi|83841088|gb|EAP80258.1| DNA topoisomerase IV subunit B [Sulfitobacter sp. NAS-14.1]
          Length = 157

 Score = 37.4 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 9   CPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHT-----HRITHMISQINNIRFTVT 63
             G+Y +   AG  +YVG+  NLQ R+++++  ++++      R      +I    ++  
Sbjct: 39  KSGIYILY-EAGEPVYVGRTRNLQGRLRAHVTRSHNSASFALKRTRAKHGEIAKATYSSR 97

Query: 64  CTEVE----A-----LLLEANMIKR 79
            +  E    A      + E  +IK+
Sbjct: 98  NSRQEIVNHAVYGKTFISEIALIKK 122


>gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
 gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
          Length = 920

 Score = 37.4 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 5/30 (16%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            G+G      L+  FG++  + + + + + 
Sbjct: 194 PGVGEKTAAKLINQFGSIDNLLQHT-DEIK 222


>gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7]
 gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7]
          Length = 870

 Score = 37.4 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEG-----------ISKKIACKIYN 605
            I G+G      LL+ + TV+ +S    + L    G           +SK+IA  I +
Sbjct: 194 GIPGVGEKTALKLLKEYHTVENLSE-HLDDLKGKMGEKIRDNIDQGLLSKRIATIIKD 250


>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 963

 Score = 37.4 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 8/52 (15%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS----KKIACKIYNH 606
            + GIG    + LLQ  G +  +     + L  I  +S    + +A K+  H
Sbjct: 223 GVPGIGEKTAQALLQGMGGLDKL----FDHLDKIADLSFRGARTLAEKLIKH 270


>gi|157364052|ref|YP_001470819.1| excinuclease ABC subunit C [Thermotoga lettingae TMO]
 gi|157314656|gb|ABV33755.1| Excinuclease ABC C subunit domain protein [Thermotoga lettingae
          TMO]
          Length = 104

 Score = 37.4 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 2  SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN 42
            + +P+  GVY++ D    ++Y+G    L++R+  +    
Sbjct: 20 KIKDVPDVFGVYELADENREIVYIGHGK-LKERLSEHFRKK 59


>gi|194336045|ref|YP_002017839.1| DNA repair protein RadC [Pelodictyon phaeoclathratiforme BU-1]
 gi|229470323|sp|B4SF75|Y935_PELPB RecName: Full=UPF0758 protein Ppha_0935
 gi|194308522|gb|ACF43222.1| DNA repair protein RadC [Pelodictyon phaeoclathratiforme BU-1]
          Length = 222

 Score = 37.4 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           L+  + +++ ++  + E L  ++GI    A +I   F
Sbjct: 50  LIARY-SLEKLANITLEELKKVKGIGDAKAMQIVAIF 85


>gi|269115188|ref|YP_003302951.1| DNA polymerase I [Mycoplasma hominis]
 gi|268322813|emb|CAX37548.1| DNA polymerase I [Mycoplasma hominis ATCC 23114]
          Length = 297

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 562 GIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNH 606
           GIGP   + LL  + T++ I         +IE I   IA K+  +
Sbjct: 199 GIGPKSAKTLLDDYKTIENIYN-------NIEKIKPSIAKKLIEY 236


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + L+  FG+++ +  +  + L 
Sbjct: 192 DNIPGCPGVGEKTAQKLVAEFGSIENLL-AHTDQLK 226


>gi|254303275|ref|ZP_04970633.1| DNA repair protein RadC [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323467|gb|EDK88717.1| DNA repair protein RadC [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 232

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 18/30 (60%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598
           + LL  F ++  + ++  + L++I+G+ K 
Sbjct: 49  KELLNKFKSLDNVFKADFDKLSAIDGLGKN 78


>gi|157962483|ref|YP_001502517.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Shewanella pealeana ATCC 700345]
 gi|157847483|gb|ABV87982.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Shewanella pealeana ATCC 700345]
          Length = 105

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 12/53 (22%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-----SPETLASIEGISKKI 599
           A  + L  +NGIG  +   +++         ++     S E L +++GI +K+
Sbjct: 50  ATAAELSSLNGIGEAKATAIVEY-------RKAHGNFSSVEELTNVKGIGEKL 95


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMISRSSPETLA 590
           D I G   +G    + L+  FG+++ +  +  + L 
Sbjct: 192 DNIPGCPGVGEKTAQKLVAEFGSIENLL-AHTDQLK 226


>gi|218233414|ref|YP_002369261.1| DNA repair protein RadC [Bacillus cereus B4264]
 gi|228923207|ref|ZP_04086497.1| DNA repair protein radC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228960730|ref|ZP_04122369.1| DNA repair protein radC [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229111925|ref|ZP_04241469.1| DNA repair protein radC [Bacillus cereus Rock1-15]
 gi|229147024|ref|ZP_04275384.1| DNA repair protein radC [Bacillus cereus BDRD-ST24]
 gi|229152656|ref|ZP_04280844.1| DNA repair protein radC [Bacillus cereus m1550]
 gi|296504945|ref|YP_003666645.1| DNA repair protein radC [Bacillus thuringiensis BMB171]
 gi|226736617|sp|B7HE86|Y4572_BACC4 RecName: Full=UPF0758 protein BCB4264_A4572
 gi|218161371|gb|ACK61363.1| DNA repair protein RadC [Bacillus cereus B4264]
 gi|228630802|gb|EEK87443.1| DNA repair protein radC [Bacillus cereus m1550]
 gi|228636412|gb|EEK92882.1| DNA repair protein radC [Bacillus cereus BDRD-ST24]
 gi|228671489|gb|EEL26789.1| DNA repair protein radC [Bacillus cereus Rock1-15]
 gi|228798946|gb|EEM45921.1| DNA repair protein radC [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228836413|gb|EEM81764.1| DNA repair protein radC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296325997|gb|ADH08925.1| DNA repair protein radC [Bacillus thuringiensis BMB171]
          Length = 225

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI GI    A ++   F
Sbjct: 50  KILHQFDGLRMLKDATLEELISIHGIGISKASQLMAAF 87


>gi|163782603|ref|ZP_02177600.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882176|gb|EDP75683.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 581

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 548 RRKKAAYSPLD--EINGIGPLRKRLLLQSFG--T----VKMISRSSPETLASIEGISKKI 599
            RK+     L+  ++ GIGP   ++  +  G  +    ++ +   S   LA + G   K 
Sbjct: 84  LRKRVPEDLLELMDVPGIGPKTLKVAYEKLGVRSKEDFIRALKDGS---LAKLPGFGPKK 140

Query: 600 ACKIYN 605
             KI  
Sbjct: 141 VEKILK 146


>gi|16800263|ref|NP_470531.1| hypothetical protein lin1194 [Listeria innocua Clip11262]
 gi|16413653|emb|CAC96425.1| lin1194 [Listeria innocua Clip11262]
          Length = 570

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 556 PLDEINGIGPLRKRLLLQSFGTVKM---ISRSSPETLASIEGISKKIACKIYNHFHK 609
           PL ++ G+G  +   L    G V     +  +    + +++G  KK A K+     +
Sbjct: 91  PLLDVPGLGGKKLSRLYHELGVVDKDTLLKEARNGHIEALKGFGKKSAEKMAEAVRE 147


>gi|299142796|ref|ZP_07035924.1| conserved hypothetical protein [Prevotella oris C735]
 gi|298575664|gb|EFI47542.1| conserved hypothetical protein [Prevotella oris C735]
          Length = 161

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 18  IAGRVLYVGKAYNLQKRIKSYMH 40
               ++Y+GK  +L+ R+ SY+ 
Sbjct: 78  SNEAIVYIGKGKSLKTRLSSYLR 100


>gi|218899622|ref|YP_002448033.1| DNA repair protein RadC [Bacillus cereus G9842]
 gi|228902983|ref|ZP_04067123.1| DNA repair protein radC [Bacillus thuringiensis IBL 4222]
 gi|228910289|ref|ZP_04074106.1| DNA repair protein radC [Bacillus thuringiensis IBL 200]
 gi|226736616|sp|B7IIW5|Y662_BACC2 RecName: Full=UPF0758 protein BCG9842_B0662
 gi|218542904|gb|ACK95298.1| DNA repair protein RadC [Bacillus cereus G9842]
 gi|228849349|gb|EEM94186.1| DNA repair protein radC [Bacillus thuringiensis IBL 200]
 gi|228856659|gb|EEN01179.1| DNA repair protein radC [Bacillus thuringiensis IBL 4222]
          Length = 225

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI GI    A ++   F
Sbjct: 50  KILHQFDGLRMLKDATLEELISIHGIGISKASQLMAAF 87


>gi|66391518|ref|YP_239043.1| DenA endonuclease II [Enterobacteria phage RB43]
 gi|62288606|gb|AAX78589.1| DenA endonuclease II [Enterobacteria phage RB43]
          Length = 135

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 11/83 (13%)

Query: 19  AGRVLYVGKAYNLQKRI-----KSYMHSNNHTH--RITHM---ISQINNIRFTVTCTEVE 68
            G ++YVGKA ++ KR+       Y    N ++  +   +   I +   +   VT  + E
Sbjct: 36  DGVIVYVGKAKDMWKRLDTYRNSKYWREANPSNILKTARLEMAIKKRKRVNLIVTTHDEE 95

Query: 69  ALL-LEANMIKRLKPRFNILLRD 90
                E NMI+++ P +N    D
Sbjct: 96  TYHDYEINMIRKINPEWNKQHYD 118


>gi|78221965|ref|YP_383712.1| Holliday junction DNA helicase RuvA [Geobacter metallireducens
           GS-15]
 gi|123729330|sp|Q39XN7|RUVA_GEOMG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|78193220|gb|ABB30987.1| Holliday junction DNA helicase subunit RuvA [Geobacter
           metallireducens GS-15]
          Length = 199

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 541 AIT--THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVK------MISRSSPETLASI 592
           AI+    R   +K  +  L  ++GIGP   R +L     ++       I + +   L+SI
Sbjct: 57  AISLFGFRTVAEKEFFQVLISVSGIGPKMARDILS---NIQPDELAGAILQGNLVRLSSI 113

Query: 593 EGISKKIACKIYNHFHK 609
            GI KK A ++     +
Sbjct: 114 PGIGKKTAERLVLELKE 130


>gi|330466911|ref|YP_004404654.1| Holliday junction DNA helicase RuvA [Verrucosispora maris
           AB-18-032]
 gi|328809882|gb|AEB44054.1| Holliday junction DNA helicase RuvA [Verrucosispora maris
           AB-18-032]
          Length = 200

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 550 KKAAYSPLDEINGIGPLRKRLLLQ-SFGTV--KMISRSSPETLASIEGISKKIACKIYNH 606
            KA +  L   +G+GP   + +L         K I+ +    L  + GI KK A ++   
Sbjct: 67  AKALFELLQTASGVGPRLAQAVLAVHTPDAVRKAIANADTAALTRVPGIGKKGAERLVLE 126

Query: 607 FHKNTSHTP 615
                   P
Sbjct: 127 LRDRIGPVP 135


>gi|296273212|ref|YP_003655843.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097386|gb|ADG93336.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Arcobacter nitrofigilis DSM 7299]
          Length = 81

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 581 ISRSSPETLASIEGISKKIACKIYNH 606
           I+++S E L ++ GI  K A  I  +
Sbjct: 19  INKASVEELKTLNGIGAKKAESIVQY 44


>gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119]
          Length = 878

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 9/49 (18%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I G+   G      LL  F +V+ +     E +  + G  KK+  K+
Sbjct: 188 DNIPGVAGVGEKTAIKLLNQFDSVEGVY----ENIDKVSG--KKLKEKL 230


>gi|331090559|ref|ZP_08339411.1| RecD/TraA family helicase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403123|gb|EGG82685.1| RecD/TraA family helicase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 737

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I G+G      +++ F   T+++I    PE LA ++GIS+K A +I
Sbjct: 88  IKGLGSALAGRIVRRFKEDTIRIIEE-EPERLAEVKGISEKKAQEI 132


>gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
 gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
          Length = 878

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 9/49 (18%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
           D I G+   G      LL  F +V+ +     E +  + G  KK+  K+
Sbjct: 188 DNIPGVAGVGEKTAIKLLNQFDSVEGVY----ENIDKVSG--KKLKEKL 230


>gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
 gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
          Length = 900

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            + G+G      L++ FGT++ I  
Sbjct: 196 GVKGVGAKTAEALIKEFGTLENIYE 220


>gi|229062148|ref|ZP_04199472.1| DNA repair protein radC [Bacillus cereus AH603]
 gi|228717131|gb|EEL68807.1| DNA repair protein radC [Bacillus cereus AH603]
          Length = 240

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E + SI G+    A ++   F
Sbjct: 65  NILHHFDGLRMLKDATLEEMMSIHGVGIAKASQLMAAF 102


>gi|229135299|ref|ZP_04264094.1| DNA repair protein radC [Bacillus cereus BDRD-ST196]
 gi|228648168|gb|EEL04208.1| DNA repair protein radC [Bacillus cereus BDRD-ST196]
          Length = 148

 Score = 37.0 bits (84), Expect = 8.4,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E + SI G+    A ++   F
Sbjct: 66  NILHHFDGLRMLKDATLEEMMSIHGVGIAKASQLMAAF 103


>gi|114567158|ref|YP_754312.1| DNA repair protein RadC [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122317861|sp|Q0AWG3|Y1642_SYNWW RecName: Full=UPF0758 protein Swol_1642
 gi|114338093|gb|ABI68941.1| DNA repair protein RadC [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 235

 Score = 37.0 bits (84), Expect = 8.4,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 568 KRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
           ++LL +  G+++ +  ++ E L + +GI    A  I    
Sbjct: 55  RQLLARHGGSLRFLMSATLEELTAEKGIGMAKAVSIKAAI 94


>gi|297526096|ref|YP_003668120.1| flap structure-specific endonuclease [Staphylothermus hellenicus
           DSM 12710]
 gi|297255012|gb|ADI31221.1| flap structure-specific endonuclease [Staphylothermus hellenicus
           DSM 12710]
          Length = 350

 Score = 37.0 bits (84), Expect = 8.5,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 558 DEINGIGPLRKRLLLQSFGTVKMISRS 584
           D + GIGP +   L++++ T+  I ++
Sbjct: 244 DGVKGIGPKKALQLVKAYKTLDKILKA 270


>gi|206561676|ref|YP_002232441.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           J2315]
 gi|229560010|sp|B4EES6|RUVA_BURCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|198037718|emb|CAR53661.1| holliday junction DNA helicase [Burkholderia cenocepacia J2315]
          Length = 193

 Score = 37.0 bits (84), Expect = 8.5,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 518 LVLNMRDPILYFIQR--LRDEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSF 575
             L      +  + +  +R++AH   +     ++++  +  L +I GIG      +L   
Sbjct: 36  YNLPQTGERVVLLTQQIVREDAH--LLYGFLTQQERTTFRELLKITGIGARMALAVLS-- 91

Query: 576 G-TVKMISRS-SPET---LASIEGISKKIACK 602
           G +V+ ++++ + +    L  + GI KK A +
Sbjct: 92  GMSVQELAQAVTMQDAARLTRLPGIGKKTAER 123


>gi|319956399|ref|YP_004167662.1| DNA ligase, nad-dependent [Nitratifractor salsuginis DSM 16511]
 gi|319418803|gb|ADV45913.1| DNA ligase, NAD-dependent [Nitratifractor salsuginis DSM 16511]
          Length = 657

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 559 EINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I+G+G    + L  +     V+ +     E L  +EG  +K A K+    
Sbjct: 439 NIDGLGEKIVQQLYDAGLVKDVEDLYHLKKEDLLKLEGFGEKKAEKLLEAI 489


>gi|317471924|ref|ZP_07931258.1| 5'-3' exonuclease [Anaerostipes sp. 3_2_56FAA]
 gi|316900590|gb|EFV22570.1| 5'-3' exonuclease [Anaerostipes sp. 3_2_56FAA]
          Length = 479

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            I GIG      +++ F +++     + E +  +  + K+   K+   +
Sbjct: 194 GIPGIGEKTASKIIKEFKSIEN----AYEHIEEV--MPKRAKNKLEEFY 236


>gi|257096605|sp|A9R666|LIGB_YERPG RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
          Length = 567

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +PE +ASI GI    A KIY  F +     
Sbjct: 465 TPEQIASIPGIGNARAEKIYQQFQRAKQQP 494


>gi|290893950|ref|ZP_06556926.1| DNA repair protein RadC [Listeria monocytogenes FSL J2-071]
 gi|290556488|gb|EFD90026.1| DNA repair protein RadC [Listeria monocytogenes FSL J2-071]
 gi|313608630|gb|EFR84484.1| putative DNA repair protein [Listeria monocytogenes FSL F2-208]
          Length = 224

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKI 603
            ++  F  V  +  +S E    + GI    A KI
Sbjct: 49  RIIMKFKNVAEMQYASIEEFQLVNGIGIAKASKI 82


>gi|167586148|ref|ZP_02378536.1| Holliday junction DNA helicase motor protein [Burkholderia
           ubonensis Bu]
          Length = 193

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I GIG      +L   G +V+ ++++ + +    L  + GI KK A +
Sbjct: 69  RTTFRELLKITGIGARMALAVLS--GMSVQELAQAVTMQDAARLTRLPGIGKKTAER 123


>gi|165926076|ref|ZP_02221908.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936320|ref|ZP_02224889.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011507|ref|ZP_02232405.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|165915934|gb|EDR34542.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921936|gb|EDR39113.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989653|gb|EDR41954.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|262360227|gb|ACY56948.1| DNA ligase, NAD-dependent [Yersinia pestis D106004]
 gi|262364173|gb|ACY60730.1| DNA ligase, NAD-dependent [Yersinia pestis D182038]
          Length = 558

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +PE +ASI GI    A KIY  F +     
Sbjct: 456 TPEQIASIPGIGNARAEKIYQQFQRAKQQP 485


>gi|162420613|ref|YP_001604687.1| NAD-dependent DNA ligase LigB [Yersinia pestis Angola]
 gi|162353428|gb|ABX87376.1| DNA ligase, NAD-dependent [Yersinia pestis Angola]
          Length = 558

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +PE +ASI GI    A KIY  F +     
Sbjct: 456 TPEQIASIPGIGNARAEKIYQQFQRAKQQP 485


>gi|153948758|ref|YP_001399043.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP
           31758]
 gi|166990677|sp|A7FCR5|LIGB_YERP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|152960253|gb|ABS47714.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758]
          Length = 567

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +PE +ASI GI    A KIY  F +     
Sbjct: 465 TPEQIASIPGIGNARAEKIYQQFQRAKQQP 494


>gi|134294766|ref|YP_001118501.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4]
 gi|166230530|sp|A4JBL3|RUVA_BURVG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|134137923|gb|ABO53666.1| Holliday junction DNA helicase RuvA [Burkholderia vietnamiensis G4]
          Length = 193

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I GIG      +L   G +V+ ++++ + +    L  + GI KK A +
Sbjct: 69  RTTFRELLKITGIGARMALAVLS--GMSVQELAQAVTMQDAARLTRLPGIGKKTAER 123


>gi|254253224|ref|ZP_04946542.1| DNA recombination protein [Burkholderia dolosa AUO158]
 gi|124895833|gb|EAY69713.1| DNA recombination protein [Burkholderia dolosa AUO158]
          Length = 164

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I GIG      +L   G +V+ ++++ + +    L  + GI KK A +
Sbjct: 40  RTTFRELLKITGIGARMALAVLS--GMSVQELAQAVTMQDAARLTRLPGIGKKTAER 94


>gi|254246308|ref|ZP_04939629.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184]
 gi|124871084|gb|EAY62800.1| DNA recombination protein, RuvA [Burkholderia cenocepacia PC184]
          Length = 164

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I GIG      +L   G +V+ ++++ + +    L  + GI KK A +
Sbjct: 40  RTTFRELLKITGIGARMALAVLS--GMSVQELAQAVTMQDAARLTRLPGIGKKTAER 94


>gi|170699606|ref|ZP_02890645.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria
           IOP40-10]
 gi|171319639|ref|ZP_02908733.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5]
 gi|172059669|ref|YP_001807321.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6]
 gi|229560008|sp|B1YTE0|RUVA_BURA4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|170135488|gb|EDT03777.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria
           IOP40-10]
 gi|171095130|gb|EDT40136.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MEX-5]
 gi|171992186|gb|ACB63105.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria MC40-6]
          Length = 193

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I GIG      +L   G +V+ ++++ + +    L  + GI KK A +
Sbjct: 69  RTTFRELLKITGIGARMALAVLS--GMSVQELAQAVTMQDAARLTRLPGIGKKTAER 123


>gi|108809492|ref|YP_653408.1| NAD-dependent DNA ligase LigB [Yersinia pestis Antiqua]
 gi|167402095|ref|ZP_02307572.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|123072562|sp|Q1C259|LIGB_YERPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|108781405|gb|ABG15463.1| putative DNA ligase [Yersinia pestis Antiqua]
 gi|167048470|gb|EDR59878.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 567

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +PE +ASI GI    A KIY  F +     
Sbjct: 465 TPEQIASIPGIGNARAEKIYQQFQRAKQQP 494


>gi|51594396|ref|YP_068587.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis IP
           32953]
 gi|186893383|ref|YP_001870495.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis PB1/+]
 gi|81640832|sp|Q66GE4|LIGB_YERPS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737628|sp|B2JYM4|LIGB_YERPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|51587678|emb|CAH19278.1| putative DNA ligase [Yersinia pseudotuberculosis IP 32953]
 gi|186696409|gb|ACC87038.1| NAD-dependent DNA ligase adenylation [Yersinia pseudotuberculosis
           PB1/+]
          Length = 567

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +PE +ASI GI    A KIY  F +     
Sbjct: 465 TPEQIASIPGIGNARAEKIYQQFQRAKQQP 494


>gi|78065251|ref|YP_368020.1| Holliday junction DNA helicase motor protein [Burkholderia sp. 383]
 gi|90134649|sp|Q39JJ0|RUVA_BURS3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|77965996|gb|ABB07376.1| DNA recombination protein, RuvA [Burkholderia sp. 383]
          Length = 193

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I GIG      +L   G +V+ ++++ + +    L  + GI KK A +
Sbjct: 69  RTTFRELLKITGIGARMALAVLS--GMSVQELAQAVTMQDAARLTRLPGIGKKTAER 123


>gi|22124020|ref|NP_667443.1| NAD-dependent DNA ligase LigB [Yersinia pestis KIM 10]
 gi|45439907|ref|NP_991446.1| NAD-dependent DNA ligase LigB [Yersinia pestis biovar Microtus str.
           91001]
 gi|108813969|ref|YP_649736.1| NAD-dependent DNA ligase LigB [Yersinia pestis Nepal516]
 gi|145601104|ref|YP_001165180.1| NAD-dependent DNA ligase LigB [Yersinia pestis Pestoides F]
 gi|150260895|ref|ZP_01917623.1| putative DNA ligase [Yersinia pestis CA88-4125]
 gi|166213764|ref|ZP_02239799.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167419052|ref|ZP_02310805.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426671|ref|ZP_02318424.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468217|ref|ZP_02332921.1| NAD-dependent DNA ligase LigB [Yersinia pestis FV-1]
 gi|170026382|ref|YP_001722887.1| NAD-dependent DNA ligase LigB [Yersinia pseudotuberculosis YPIII]
 gi|218927262|ref|YP_002345137.1| NAD-dependent DNA ligase LigB [Yersinia pestis CO92]
 gi|229836152|ref|ZP_04456320.1| putative DNA ligase [Yersinia pestis Pestoides A]
 gi|229839890|ref|ZP_04460049.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841972|ref|ZP_04462127.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904499|ref|ZP_04519610.1| putative DNA ligase [Yersinia pestis Nepal516]
 gi|270488499|ref|ZP_06205573.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis
           KIM D27]
 gi|294502148|ref|YP_003566210.1| DNA ligase [Yersinia pestis Z176003]
 gi|123073072|sp|Q1CCZ4|LIGB_YERPN RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|123777855|sp|Q7CLB2|LIGB_YERPE RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|166226366|sp|A4TSE5|LIGB_YERPP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|226737629|sp|B1JQZ3|LIGB_YERPY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+] B
 gi|21956763|gb|AAM83694.1|AE013610_6 putative enzyme [Yersinia pestis KIM 10]
 gi|45434762|gb|AAS60323.1| putative DNA ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108777617|gb|ABG20136.1| DNA ligase [Yersinia pestis Nepal516]
 gi|115345873|emb|CAL18731.1| putative DNA ligase [Yersinia pestis CO92]
 gi|145212800|gb|ABP42207.1| DNA ligase [Yersinia pestis Pestoides F]
 gi|149290303|gb|EDM40380.1| putative DNA ligase [Yersinia pestis CA88-4125]
 gi|166205166|gb|EDR49646.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963046|gb|EDR59067.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167054360|gb|EDR64177.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752916|gb|ACA70434.1| DNA ligase (NAD(+)) [Yersinia pseudotuberculosis YPIII]
 gi|229678617|gb|EEO74722.1| putative DNA ligase [Yersinia pestis Nepal516]
 gi|229690282|gb|EEO82336.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696256|gb|EEO86303.1| putative DNA ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706600|gb|EEO92606.1| putative DNA ligase [Yersinia pestis Pestoides A]
 gi|270337003|gb|EFA47780.1| NAD-dependent DNA ligase OB-fold domain protein [Yersinia pestis
           KIM D27]
 gi|294352607|gb|ADE62948.1| DNA ligase [Yersinia pestis Z176003]
 gi|320013395|gb|ADV96966.1| putative DNA ligase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 567

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 585 SPETLASIEGISKKIACKIYNHFHKNTSHT 614
           +PE +ASI GI    A KIY  F +     
Sbjct: 465 TPEQIASIPGIGNARAEKIYQQFQRAKQQP 494


>gi|115350636|ref|YP_772475.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD]
 gi|122324004|sp|Q0BI82|RUVA_BURCM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|115280624|gb|ABI86141.1| Holliday junction DNA helicase RuvA [Burkholderia ambifaria AMMD]
          Length = 193

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I GIG      +L   G +V+ ++++ + +    L  + GI KK A +
Sbjct: 69  RTTFRELLKITGIGARMALAVLS--GMSVQELAQAVTMQDAARLTRLPGIGKKTAER 123


>gi|107021766|ref|YP_620093.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU
           1054]
 gi|116688712|ref|YP_834335.1| Holliday junction DNA helicase motor protein [Burkholderia
           cenocepacia HI2424]
 gi|161525864|ref|YP_001580876.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|170732009|ref|YP_001763956.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           MC0-3]
 gi|189349415|ref|YP_001945043.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|221202296|ref|ZP_03575330.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans
           CGD2M]
 gi|221209110|ref|ZP_03582104.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2]
 gi|221214501|ref|ZP_03587472.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1]
 gi|123371880|sp|Q1BZ35|RUVA_BURCA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|166230524|sp|A0K4L5|RUVA_BURCH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560009|sp|B1JVV4|RUVA_BURCC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|229560011|sp|A9AH72|RUVA_BURM1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gi|105891955|gb|ABF75120.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia AU
           1054]
 gi|116646801|gb|ABK07442.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           HI2424]
 gi|160343293|gb|ABX16379.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans ATCC
           17616]
 gi|169815251|gb|ACA89834.1| Holliday junction DNA helicase RuvA [Burkholderia cenocepacia
           MC0-3]
 gi|189333437|dbj|BAG42507.1| holliday junction DNA helicase [Burkholderia multivorans ATCC
           17616]
 gi|221165758|gb|EED98233.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD1]
 gi|221171014|gb|EEE03467.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans CGD2]
 gi|221177870|gb|EEE10283.1| Holliday junction DNA helicase RuvA [Burkholderia multivorans
           CGD2M]
          Length = 193

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPET---LASIEGISKKIACK 602
           +  +  L +I GIG      +L   G +V+ ++++ + +    L  + GI KK A +
Sbjct: 69  RTTFRELLKITGIGARMALAVLS--GMSVQELAQAVTMQDAARLTRLPGIGKKTAER 123


>gi|309807617|ref|ZP_07701563.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|308169138|gb|EFO71210.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           01V1-a]
          Length = 341

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 558 DEINGI---GPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNTSHT 614
           D   G+   G      L+  +G+V+ +     E +A ++      A KI  +  ++ ++ 
Sbjct: 101 DNYPGVEKVGAKTASKLINQYGSVENLY----EKIAQVK------ASKIKEYLIRDKNNA 150


>gi|206969519|ref|ZP_03230473.1| DNA repair protein RadC [Bacillus cereus AH1134]
 gi|228941621|ref|ZP_04104168.1| DNA repair protein radC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228954737|ref|ZP_04116759.1| DNA repair protein radC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228974550|ref|ZP_04135116.1| DNA repair protein radC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981145|ref|ZP_04141445.1| DNA repair protein radC [Bacillus thuringiensis Bt407]
 gi|229071963|ref|ZP_04205173.1| DNA repair protein radC [Bacillus cereus F65185]
 gi|229081719|ref|ZP_04214212.1| DNA repair protein radC [Bacillus cereus Rock4-2]
 gi|229180730|ref|ZP_04308068.1| DNA repair protein radC [Bacillus cereus 172560W]
 gi|229192665|ref|ZP_04319624.1| DNA repair protein radC [Bacillus cereus ATCC 10876]
 gi|206735207|gb|EDZ52375.1| DNA repair protein RadC [Bacillus cereus AH1134]
 gi|228590755|gb|EEK48615.1| DNA repair protein radC [Bacillus cereus ATCC 10876]
 gi|228602708|gb|EEK60191.1| DNA repair protein radC [Bacillus cereus 172560W]
 gi|228701564|gb|EEL54057.1| DNA repair protein radC [Bacillus cereus Rock4-2]
 gi|228711122|gb|EEL63087.1| DNA repair protein radC [Bacillus cereus F65185]
 gi|228778345|gb|EEM26612.1| DNA repair protein radC [Bacillus thuringiensis Bt407]
 gi|228784953|gb|EEM32966.1| DNA repair protein radC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228804935|gb|EEM51532.1| DNA repair protein radC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228817833|gb|EEM63911.1| DNA repair protein radC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942233|gb|AEA18129.1| DNA repair protein radC [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 225

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI GI    A ++   F
Sbjct: 50  KILHQFDGLRMLKDATLEELISIHGIGISKASQLMAAF 87


>gi|156551812|ref|XP_001603974.1| PREDICTED: similar to excision repair cross-complementing 1 ercc1
           [Nasonia vitripennis]
          Length = 261

 Score = 37.0 bits (84), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 571 LLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           LL +FGT K I  +   +LA   G   + A ++    H+
Sbjct: 213 LLSTFGTFKDIIEAPSASLALCPGFGPQKAQRLNKTLHE 251


>gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
 gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
          Length = 920

 Score = 37.0 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 5/30 (16%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            G+G      L+  FG++  + + + + + 
Sbjct: 194 PGVGEKTAAKLINQFGSIDNMLQHT-DEIK 222


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
          Length = 936

 Score = 37.0 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISR 583
            I G+GP     LL+ + ++  I  
Sbjct: 193 GIKGVGPKTAVKLLEEYKSLDGIYA 217


>gi|163942202|ref|YP_001647086.1| DNA repair protein RadC [Bacillus weihenstephanensis KBAB4]
 gi|229169196|ref|ZP_04296910.1| DNA repair protein radC [Bacillus cereus AH621]
 gi|229485544|sp|A9VIS8|Y4299_BACWK RecName: Full=UPF0758 protein BcerKBAB4_4299
 gi|163864399|gb|ABY45458.1| DNA repair protein RadC [Bacillus weihenstephanensis KBAB4]
 gi|228614262|gb|EEK71373.1| DNA repair protein radC [Bacillus cereus AH621]
          Length = 225

 Score = 37.0 bits (84), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E + SI G+    A ++   F
Sbjct: 50  NILHHFDGLRMLKDATLEEMMSIHGVGIAKASQLMAAF 87


>gi|182419813|ref|ZP_02951053.1| ComE operon protein [Clostridium butyricum 5521]
 gi|237666596|ref|ZP_04526581.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376361|gb|EDT73943.1| ComE operon protein [Clostridium butyricum 5521]
 gi|237657795|gb|EEP55350.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 224

 Score = 37.0 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 14/60 (23%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A    L  +NGIG  + + +++       F ++        E + ++ GI  K+  KI  
Sbjct: 169 ATTDKLKTLNGIGDSKAKSIIEYREQNGGFKSI--------EEIKNVTGIGDKMFEKIKE 220


>gi|170119612|ref|XP_001890929.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|317374866|sp|B0E412|FEN12_LACBS RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
           Full=Flap structure-specific endonuclease 1-B
 gi|164633979|gb|EDQ98419.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 469

 Score = 37.0 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMI 581
           L+ I G+GP     L++ +G +K +
Sbjct: 239 LEPIKGVGPKSALKLIREYGGLKGV 263


>gi|91214514|ref|ZP_01251487.1| GIY-YIG catalytic domain containing protein; possible intron
          encoded endonuclease [Psychroflexus torquis ATCC
          700755]
 gi|91186941|gb|EAS73311.1| GIY-YIG catalytic domain containing protein; possible intron
          encoded endonuclease [Psychroflexus torquis ATCC
          700755]
          Length = 234

 Score = 37.0 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 11 GVYQMLDIAGRVLYVGKAYNLQKRIKSYM-------HSNNHTHRI----THMISQINNIR 59
          G+YQ+L+I     Y+G A NLQKR   ++         + H  R          +IN + 
Sbjct: 3  GIYQILNIENGDCYIGSAVNLQKRTNQHLSMLRRYISKHIHLQRTWNKYGEENFEINILE 62

Query: 60 FTVTCTEVEALLLEANMIKRLKPRFNIL 87
                ++     E   I + KP +N+ 
Sbjct: 63 KVADRNDLI--QREQFFIDKFKPAYNVR 88


>gi|323489982|ref|ZP_08095203.1| DNA repair protein radC-like protein [Planococcus donghaensis
           MPA1U2]
 gi|323396278|gb|EGA89103.1| DNA repair protein radC-like protein [Planococcus donghaensis
           MPA1U2]
          Length = 224

 Score = 37.0 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 572 LQSFGTVKMISRSSPETLASIEGISKKIA 600
           L  F  ++ +  ++ E + +I GI +  A
Sbjct: 51  LTHFEHIQELKNATIEEMVAINGIGQAKA 79


>gi|190571750|ref|YP_001976108.1| N utilization substance protein A [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019234|ref|ZP_03335041.1| N utilization substance protein A [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190358022|emb|CAQ55491.1| N utilization substance protein A [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995343|gb|EEB55984.1| N utilization substance protein A [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 517

 Score = 37.0 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 7/50 (14%)

Query: 557 LDEINGIGPLRKRLLLQS-FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           L+EI G      +LL+   F +V+ IS +S + LASIEG ++ IA +++N
Sbjct: 384 LEEIMG------QLLVTEGFSSVEDISNTSIKELASIEGFNEDIANELHN 427


>gi|30022542|ref|NP_834173.1| DNA repair protein radC [Bacillus cereus ATCC 14579]
 gi|229129746|ref|ZP_04258713.1| DNA repair protein radC [Bacillus cereus BDRD-Cer4]
 gi|29898100|gb|AAP11374.1| DNA repair protein radC [Bacillus cereus ATCC 14579]
 gi|228653662|gb|EEL09533.1| DNA repair protein radC [Bacillus cereus BDRD-Cer4]
          Length = 183

 Score = 37.0 bits (84), Expect = 8.8,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI GI    A ++   F
Sbjct: 50  KILHQFDGLRMLKDATLEELISIHGIGISKASQLMAAF 87


>gi|319778457|ref|YP_004129370.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9]
 gi|317108481|gb|ADU91227.1| Holliday junction DNA helicase RuvA [Taylorella equigenitalis MCE9]
          Length = 191

 Score = 37.0 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRSSPET-----LASIEGISKKIACKIY 604
           +A +  L ++NGIG      +L   G +   +  +  E      L  + GI KK A +I 
Sbjct: 69  RATFRTLIKVNGIGFKSALGILS--GMSPDALYNA-IEEQDSSQLERVPGIGKKTAARII 125

Query: 605 NHFHKNTSHTPT 616
                      T
Sbjct: 126 LELKGKLPEIST 137


>gi|257459354|ref|ZP_05624466.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Campylobacter gracilis RM3268]
 gi|257443247|gb|EEV18378.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Campylobacter gracilis RM3268]
          Length = 155

 Score = 37.0 bits (84), Expect = 8.9,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 580 MISRSSPETLASIEGISKKIACKIYNH 606
            ++ +S E L ++ GI +  A  I ++
Sbjct: 22  NLNTASKEELMALPGIGEAKAQAIIDY 48


>gi|163783946|ref|ZP_02178915.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880781|gb|EDP74316.1| Holliday junction resolvasome DNA-binding subunit [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 180

 Score = 37.0 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 535 DEAHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFG----TVKMISRSSPETLA 590
           DE+  F +   + R+ +  +  L  INGIG      +L++F     T+  +  +  + L+
Sbjct: 49  DES--FRLFGFKDRQTRELFIKLTSINGIGVKHAFSILKNFNYEDFTL-AVENNRIDLLS 105

Query: 591 SIEGISKKIACKI 603
           S+ GI KK A +I
Sbjct: 106 SVPGIGKKTASRI 118


>gi|4235380|gb|AAD13193.1| NAD-dependent DNA ligase [Thermus sp. Vil3]
          Length = 505

 Score = 37.0 bits (84), Expect = 9.0,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 539 RF-AITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGI 595
           RF AI  H   RK        +I G+G      LL+      V  + R   E L  +E +
Sbjct: 380 RFEAI-RHYASRKAM------DIGGLGEKLIEKLLEKGLVKDVADLYRLKEEDLVGLERM 432

Query: 596 SKKIACKIYNHFHKNTS 612
            KK A  +     K+ +
Sbjct: 433 GKKSAQNLLRQIEKSKA 449


>gi|332663957|ref|YP_004446745.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332771|gb|AEE49872.1| Holliday junction ATP-dependent DNA helicase ruvA
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 196

 Score = 37.0 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET----LASIEGISKKIACKI--- 603
           ++ +  L  ++G+GP   +++L S  +   +  +          +++GI  K+A +I   
Sbjct: 68  RSLFRHLISVSGVGPTTAQIMLSSL-SPDELRAAIIGEQEQVFRAVKGIGPKMAKRIILD 126

Query: 604 -YNHFHKNTSHTP 615
             +   K++   P
Sbjct: 127 LKDKLIKDSGDLP 139


>gi|308270279|emb|CBX26891.1| hypothetical protein N47_A09200 [uncultured Desulfobacterium sp.]
          Length = 835

 Score = 37.0 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGI 595
           K   S L  I GIGP     +++ FG  T++ I  +  + L  I GI
Sbjct: 103 KYLGSGL--IKGIGPKTAHKIVKHFGNETLE-IFENDIKRLTEIRGI 146


>gi|256819155|ref|YP_003140434.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM
           7271]
 gi|256580738|gb|ACU91873.1| Holliday junction DNA helicase RuvA [Capnocytophaga ochracea DSM
           7271]
          Length = 194

 Score = 37.0 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKI 603
           L  ++G+G    R +L +  T   +  +       T+ +++GI  K A ++
Sbjct: 74  LLSVSGVGASTARTMLSAL-TAAQVRNAIINGDVATIQAVKGIGAKTAQRV 123


>gi|182413420|ref|YP_001818486.1| excinuclease ABC subunit C [Opitutus terrae PB90-1]
 gi|177840634|gb|ACB74886.1| Excinuclease ABC C subunit domain protein [Opitutus terrae
          PB90-1]
          Length = 84

 Score = 37.0 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 12 VYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALL 71
          VY + D AGR  Y+G+  +L KR+  +      T     M  ++  I         EA +
Sbjct: 4  VYMLQDEAGRC-YIGETADLAKRLAQHRCGGTQT--TRRMKGELRLIATRTLADAHEARV 60

Query: 72 LEANMIKRLK 81
          LE  + K  K
Sbjct: 61 LERTL-KSWK 69


>gi|329765203|ref|ZP_08256783.1| hypothetical protein Nlim_0546 [Candidatus Nitrosoarchaeum limnia
          SFB1]
 gi|329138109|gb|EGG42365.1| hypothetical protein Nlim_0546 [Candidatus Nitrosoarchaeum limnia
          SFB1]
          Length = 105

 Score = 37.0 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 17/59 (28%)

Query: 10 PGVYQMLDIAGRVLYVGKAYNL-----------------QKRIKSYMHSNNHTHRITHM 51
          PGVY + +    V+Y+G++ NL                 +++  SY        +   M
Sbjct: 22 PGVYVLYNRNKDVIYIGESDNLEKTFTKYVDTGFEGNECKQKTSSYQREFTDKPKERQM 80


>gi|270159863|ref|ZP_06188519.1| competence protein ComEA helix-hairpin-helix repeat family protein
           [Legionella longbeachae D-4968]
 gi|289165382|ref|YP_003455520.1| hypothetical protein LLO_2049 [Legionella longbeachae NSW150]
 gi|269988202|gb|EEZ94457.1| competence protein ComEA helix-hairpin-helix repeat family protein
           [Legionella longbeachae D-4968]
 gi|288858555|emb|CBJ12436.1| hypothetical protein LLO_2049 [Legionella longbeachae NSW150]
          Length = 109

 Score = 37.0 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 14/45 (31%)

Query: 559 EINGIGPLRKRLLLQS------FGTVKMISRSSPETLASIEGISK 597
            I GIG  R   ++        F ++        E L+ ++GI +
Sbjct: 53  SIKGIGTKRAEAIIAYRQTHHGFKSL--------EELSEVKGIGQ 89


>gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
 gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
          Length = 886

 Score = 37.0 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLAS 591
            + GIGP     L+Q +G+V+ +     + L  
Sbjct: 197 GVEGIGPKTASNLIQKYGSVENLYD-HIDDLKK 228


>gi|319795920|ref|YP_004157560.1| holliday junction DNA helicase ruva [Variovorax paradoxus EPS]
 gi|315598383|gb|ADU39449.1| Holliday junction DNA helicase RuvA [Variovorax paradoxus EPS]
          Length = 190

 Score = 37.0 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFG-TVKMISRS-SPETL---ASIEGISKKIACK 602
           +AA+  L +I G+GP     LL   G +V  +S++ + + L     I GI KK A +
Sbjct: 69  RAAFRQLIKITGVGPRTALGLLS--GMSVGELSQAITTQELGRLVKIPGIGKKTAER 123


>gi|301060602|ref|ZP_07201437.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300445305|gb|EFK09235.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 55

 Score = 37.0 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 557 LDEINGIGPLRKRLLLQSF---GTVKMISRSSPETLASIEGISKKIACKIYN 605
           L  + GIGP     +++      + K I     E +  I+GI +K   KI +
Sbjct: 4   LSSLPGIGPAIAERIIEYREKNKSFKKI-----EDIMDIKGIGEKTFQKIKD 50


>gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18]
 gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18]
          Length = 920

 Score = 37.0 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 5/30 (16%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            G+G      L+  FG++  + + + + + 
Sbjct: 194 PGVGEKTAAKLINQFGSIDNMLQHT-DEIK 222


>gi|241116678|ref|XP_002401556.1| DNA repair endonuclease xp-f / mei-9 / rad1, putative [Ixodes
           scapularis]
 gi|215493146|gb|EEC02787.1| DNA repair endonuclease xp-f / mei-9 / rad1, putative [Ixodes
           scapularis]
          Length = 775

 Score = 37.0 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 557 LDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHK 609
           L  + G+    + LL + F  +  +  +S E LAS  G +   A  ++   H+
Sbjct: 707 LLHLPGVNLKNQALLTRKFTNLVEMFAASEEELASAMG-NAAQAKLLWESIHR 758


>gi|83643895|ref|YP_432330.1| DNA repair protein [Hahella chejuensis KCTC 2396]
 gi|123534642|sp|Q2SN69|Y1020_HAHCH RecName: Full=UPF0758 protein HCH_01020
 gi|83631938|gb|ABC27905.1| DNA repair protein [Hahella chejuensis KCTC 2396]
          Length = 224

 Score = 37.0 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 572 LQSFGTVKMISRSSPETLASIEGISKK 598
           +  FG ++ +  +S E    I G+ + 
Sbjct: 51  INHFGGLRPLLDASFEEFRQIPGLGEA 77


>gi|315660157|ref|ZP_07913014.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590]
 gi|315494838|gb|EFU83176.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590]
          Length = 667

 Score = 37.0 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 16/112 (14%)

Query: 504 SAGMEKFFVKKGEALVLNM--RDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPL--DE 559
               + F++ + + L L    +  +   +Q         AI    K +  +    L    
Sbjct: 461 KDVADIFYLTEEDLLPLERMGKKKVENLLQ---------AID---KAKSNSLEHLLFGLG 508

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           I  +G     +L + + T++ +   + + L SI  I  K+A  +  +     
Sbjct: 509 IRHLGAKASYVLAEKYETIERLLTVTEDELISIHDIGDKLAQSVVTYLENED 560


>gi|261749358|ref|YP_003257043.1| Holliday junction DNA helicase motor protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497450|gb|ACX83900.1| Holliday junction DNA helicase motor protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 202

 Score = 37.0 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS-SPETLA---SIEGISKKIACKIYNH 606
           +  +S L  +NGIGP     +L S  T   I  S S E +     ++GI KK A +I   
Sbjct: 70  RKIFSHLISVNGIGPSSAITILSSL-TPHEIKESISREDIEVFNQVKGIGKKTAQRIIIE 128

Query: 607 FHKNTSHTPT 616
                S +P+
Sbjct: 129 LKDKISISPS 138


>gi|326390020|ref|ZP_08211582.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993885|gb|EGD52315.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 570

 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYN 605
           +I G+GP + + L +  G  T+  +  +  E  L  + G  +K   KI+ 
Sbjct: 95  KIPGLGPKKIKTLHEKLGITTIGELEYACVENRLVDLPGFGEKTQKKIFE 144


>gi|228904832|ref|ZP_04068886.1| hypothetical protein bthur0014_59560 [Bacillus thuringiensis IBL
          4222]
 gi|228854846|gb|EEM99450.1| hypothetical protein bthur0014_59560 [Bacillus thuringiensis IBL
          4222]
          Length = 266

 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 35 IKSYMHSNNHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLKPRFNILLRDDKSF 94
          ++ +   N H         Q++ +      +E +  +LE   I + KP +N      K +
Sbjct: 1  MRQHFGKNGHLP--EECYEQVSLVECIELDSESDMSVLELYFINKWKPVYNS----SKKY 54

Query: 95 PYI 97
            I
Sbjct: 55 SSI 57


>gi|254168868|ref|ZP_04875708.1| conserved domain protein, putative [Aciduliprofundum boonei T469]
 gi|197622132|gb|EDY34707.1| conserved domain protein, putative [Aciduliprofundum boonei T469]
          Length = 134

 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 21/77 (27%)

Query: 4  EQMPECPGVYQ---MLDIAGRV---------------LYVGKA-YNLQKRIKSYMHSNNH 44
          E++P+  GVY      D    +               +YVG A  NL+KR++ +      
Sbjct: 2  EKLPDR-GVYLLLIFKDNEEEIRVGALGRIKFDMGYYVYVGSAQRNLRKRLERHFRKEKK 60

Query: 45 -THRITHMISQINNIRF 60
              I +++S+   + F
Sbjct: 61 VRWHIDYLLSRARILDF 77


>gi|153854475|ref|ZP_01995753.1| hypothetical protein DORLON_01748 [Dorea longicatena DSM 13814]
 gi|149753001|gb|EDM62932.1| hypothetical protein DORLON_01748 [Dorea longicatena DSM 13814]
          Length = 738

 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 560 INGIGPLRKRLLLQSFG--TVKMISRSSPETLASIEGISKKIACKI 603
           I GIG      +++ F   T ++I    PE LA I+GIS++ A +I
Sbjct: 88  IKGIGAALAGKIVKKFKENTFRIIEE-EPERLAEIKGISERKAREI 132


>gi|86606791|ref|YP_475554.1| phospholipase D/competence protein ComEA [Synechococcus sp.
           JA-3-3Ab]
 gi|86555333|gb|ABD00291.1| phospholipase D/competence protein ComEA helix-hairpin-helix domain
           protein [Synechococcus sp. JA-3-3Ab]
          Length = 587

 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 552 AAYSPLDEINGIGPLRKRLLLQS--FGTVKMISRSSPETLASIEGISKKIACKIYN 605
           A  + L ++ GIGP   + ++++  F ++        E L  ++GI      ++ +
Sbjct: 536 ATAAELQQLPGIGPALAQRIIEARPFSSL--------EDLQRVKGIGPARIEQLRD 583


>gi|307266741|ref|ZP_07548267.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918232|gb|EFN48480.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 570

 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 559 EINGIGPLRKRLLLQSFG--TVKMISRSSPE-TLASIEGISKKIACKIYN 605
           +I G+GP + + L +  G  T+  +  +  E  L  + G  +K   KI+ 
Sbjct: 95  KIPGLGPKKIKTLHEKLGITTIGELEYACVENRLVDLPGFGEKTQKKIFE 144


>gi|289550377|ref|YP_003471281.1| DNA ligase [Staphylococcus lugdunensis HKU09-01]
 gi|289179909|gb|ADC87154.1| DNA ligase [Staphylococcus lugdunensis HKU09-01]
          Length = 667

 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 16/112 (14%)

Query: 504 SAGMEKFFVKKGEALVLNM--RDPILYFIQRLRDEAHRFAITTHRKRRKKAAYSPL--DE 559
               + F++ + + L L    +  +   +Q         AI    K +  +    L    
Sbjct: 461 KDVADIFYLTEEDLLPLERMGKKKVENLLQ---------AID---KAKSNSLEHLLFGLG 508

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKNT 611
           I  +G     +L + + T++ +   + + L SI  I  K+A  +  +     
Sbjct: 509 IRHLGAKASYVLAEKYETIERLLTVTEDELISIHDIGDKLAQSVVTYLENED 560


>gi|229048171|ref|ZP_04193740.1| DNA repair protein radC [Bacillus cereus AH676]
 gi|228723158|gb|EEL74534.1| DNA repair protein radC [Bacillus cereus AH676]
          Length = 184

 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 570 LLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            +L  F  ++M+  ++ E L SI GI    A ++   F
Sbjct: 50  KILHQFDGLRMLKDATLEELISIHGIGISKASQLMAAF 87


>gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
 gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
          Length = 920

 Score = 37.0 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 5/30 (16%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLA 590
            G+G      L+  FG++  + + + + + 
Sbjct: 194 PGVGEKTAAKLINQFGSIDNMLQHT-DEIK 222


>gi|148284033|ref|YP_001248123.1| transposase and inactivated derivative [Orientia tsutsugamushi str.
           Boryong]
 gi|146739472|emb|CAM79148.1| transposase and inactivated derivative [Orientia tsutsugamushi str.
           Boryong]
          Length = 320

 Score = 37.0 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 537 AHRFAITTHRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGIS 596
           AH   I  ++    KA    L+ I GIG   + ++L  F  ++  S +  + + +  G++
Sbjct: 178 AH---IKNNKDFHDKAML--LESIPGIGAKTQAIVLAFFADIEKFSSA--KQVVAFVGLN 230

Query: 597 KK 598
            K
Sbjct: 231 PK 232


>gi|91202606|emb|CAJ72245.1| conserved hypothetical protein [Candidatus Kuenenia
          stuttgartiensis]
          Length = 95

 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 12 VYQMLDIAGRVLYVGKAYNLQKRI 35
          VY M +    VLY G   NL++R+
Sbjct: 7  VYIMTNKNNTVLYTGVTNNLKRRV 30


>gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7]
 gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7]
          Length = 880

 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 559 EINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHF 607
            + G+G      L++ +G+++ +       L +I+ IS K   KI  + 
Sbjct: 193 GVPGVGEKTAFKLIKEYGSIENV-------LNNIDNISGK---KIKENL 231


>gi|212715818|ref|ZP_03323946.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661185|gb|EEB21760.1| hypothetical protein BIFCAT_00719 [Bifidobacterium catenulatum DSM
           16992]
          Length = 210

 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 541 AIT--THRKRRKKAAYSPLDEINGIGPLRKRLLLQSFGTV--KMISRS----SPETLASI 592
           AIT         K  +  L +++GIGP     LL    T+  + ++R+        LA  
Sbjct: 61  AITLYGFSSLASKRMFLQLQKVSGIGPKVALSLLS---TLPPERLARAVADGDATALAKA 117

Query: 593 EGISKKIACKIYNHFHKNTS 612
            G+ KK A KI      +  
Sbjct: 118 PGLGKKGAQKIILELKGSID 137


>gi|297616928|ref|YP_003702087.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144765|gb|ADI01522.1| Holliday junction DNA helicase RuvA [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 201

 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 551 KAAYSPLDEINGIGPLRKRLLLQSFGTVKMISRS----SPETLASIEGISKKIACKIYNH 606
           +  +  L  I G+G      ++ S  T + + R+      ++L S+ GI +K A ++   
Sbjct: 69  RQLFRTLLSIPGLGAKTCLGIVSSM-TTEELYRAVLAQDEKSLTSVPGIGRKTAQRLIFE 127

Query: 607 FHKNTSHT 614
                  T
Sbjct: 128 LQNKWPKT 135


>gi|291543066|emb|CBL16176.1| helicase, putative, RecD/TraA family [Ruminococcus bromii L2-63]
          Length = 737

 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 560 INGIGPLRKRLLLQSFGTVKMISRSSPETLAS-------IEGISKKIACKIYNHFHKNTS 612
           I GIG    + L++ FG       ++ + L +       ++GIS + A        +NT 
Sbjct: 93  IKGIGTQTAQRLVKEFG------EATLDVLENQPERVAMLKGISSQKAEDFSKQLKQNTG 146


>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
 gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
          Length = 952

 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 558 DEING---IGPLRKRLLLQSFGTVKMI 581
           D I G   +G    + L+  FG+++ +
Sbjct: 192 DNIPGCPGVGEKTAQKLVTEFGSIENL 218


>gi|158929981|gb|ABW82962.1| DNA repair protein [uncultured bacterium pEAF66]
          Length = 224

 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 6/30 (20%), Positives = 17/30 (56%)

Query: 569 RLLLQSFGTVKMISRSSPETLASIEGISKK 598
           R L++ FG+++ +  +S    +++ G+   
Sbjct: 48  RDLIEQFGSIQGLFAASLAQFSAVRGMGPA 77


>gi|15606063|ref|NP_213440.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
 gi|7673992|sp|O66880|DNLJ_AQUAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|2983242|gb|AAC06838.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
          Length = 720

 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 563 IGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFH 608
           +G    + + +   +V  +     E L  +EGI  K+A  I   F+
Sbjct: 549 VGQTTAKKIAEIINSVWDLKDIPLEKLMRLEGIGYKVARSIKEFFN 594


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.130    0.414 

Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,462,079,435
Number of Sequences: 14124377
Number of extensions: 407834042
Number of successful extensions: 777801
Number of sequences better than 10.0: 9211
Number of HSP's better than 10.0 without gapping: 6580
Number of HSP's successfully gapped in prelim test: 2631
Number of HSP's that attempted gapping in prelim test: 745744
Number of HSP's gapped (non-prelim): 14916
length of query: 616
length of database: 4,842,793,630
effective HSP length: 145
effective length of query: 471
effective length of database: 2,794,758,965
effective search space: 1316331472515
effective search space used: 1316331472515
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 84 (37.0 bits)